BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023316
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
Length = 198
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 134/193 (69%), Gaps = 1/193 (0%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 151
D + V++K+ ++GD IGKTS +V YV G+ E S Q G+N + KT+ ++ I FS
Sbjct: 3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62
Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 211
IWD+GG + +P+ C DAVAILFMFDL+ + TLNSI WY +AR +N+TA+PILIGT
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 271
K+D F+ P + Q I QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L T+
Sbjct: 123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182
Query: 272 KRNLTIGEPIIDF 284
+G+PI+++
Sbjct: 183 PEIKNVGDPILEY 195
>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TEM1 PE=1 SV=1
Length = 245
Score = 152 bits (383), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 115/187 (61%), Gaps = 1/187 (0%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 157
V +++ L+GD Q+GKTS +VKYV N ++ Q G+N + + + ++ I FSI D+GG
Sbjct: 19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78
Query: 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217
+ +PIA + I+F+FDLT TL+SI WY +A N +AIPIL+GTK+D +
Sbjct: 79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 277
L P+ Q I+ + YA+ M A L F S +IN+ KIFK +AK+FNL T+ I
Sbjct: 139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198
Query: 278 GEPIIDF 284
G+P++ +
Sbjct: 199 GDPLLIY 205
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 67/123 (54%), Gaps = 7/123 (5%)
Query: 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 152
D V+ K LLGD +GKTSF+VKY N E L G+ L NK ++V G R+ I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGT 211
WD G R +DA A+L ++D+T++ T ++I W E R++ Q + I LIG
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGN 304
Query: 212 KFD 214
K D
Sbjct: 305 KAD 307
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 19 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 79 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 135
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 136 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 173
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 16 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 76 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVD--- 132
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 133 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 170
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 100 SLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158
S K+ LLG+ +GKTS V++Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 217
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 20/206 (9%)
Query: 85 SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ 144
S + SGYD +S KI L+GD +GK+S +V ++ + E G++ K L V
Sbjct: 3 SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57
Query: 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--N 201
G R+ +IWD G R + A I+ ++D+T R T ++V W E + N
Sbjct: 58 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTN 117
Query: 202 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261
Q + +L+G K D + I A AK + SA NV + F+ +
Sbjct: 118 QECVRMLVGNKVDRESERGVSREEGI-----ALAKELNCMFLECSARTRQNVEQCFEELA 172
Query: 262 AKLFNLP-------WTVKRNLTIGEP 280
K+ +P VKRN+ +P
Sbjct: 173 LKIMEVPSLLEEGSSAVKRNILKQKP 198
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G R P+ + + A + ++D+T T +++ W E R+ I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
+ D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 5/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G R P+ + + A + ++D+T T +++ W E R+ +I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 15/165 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
V K+ LLG+ +GKTS V++Y N+ E++LQ + + K L + G RI +IWD
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQAS---FVEKRLNIGGKRIQLAIWD 71
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 213
G R PI +D+ + ++D+T + + W E ++ + + ++G K
Sbjct: 72 TAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKI 131
Query: 214 DDFVRLPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIF 257
D D Q T++ + A YA+++ A +++SA + V ++F
Sbjct: 132 D------LDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELF 170
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + TL V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTLAVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK-WNQTAIPILIGTKF 213
G R P+ + A A + ++D+TS + W E +K N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKA 125
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
D D + A +AR YA+ + LFF +SA +NVN IF I +L
Sbjct: 126 D-----LEDRRKVTAEEARLYAE--ENGLFFMETSAKTAVNVNAIFYEIAKRL 171
>sp|P07560|SEC4_YEAST Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC4 PE=1 SV=1
Length = 215
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLI 137
+GL +S + +G DS +KI L+GD +GK+ +V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 138 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 197
KT+ + G ++ +WD G R + A+ I+ ++D+T T +I W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 198 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256
+ N A +L+G K D R+ A Q A AK + SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 257 FKFIMAKL 264
F F +AKL
Sbjct: 173 F-FTLAKL 179
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 7/172 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
SD KI L+GD +GKTS ++++ N QE S+ M ++ NK +++ G IWD
Sbjct: 2 SDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWD 61
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKF 213
G R + A +L +D+T + T N++ W E +++ + +L+G K
Sbjct: 62 TAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKC 121
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
D D + + AR YA ++ +SA +NV + F + +++
Sbjct: 122 D-----LEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIY 168
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSI 152
DSD+ KI L+GD +GKTS ++++ N QE S+ M ++ NK + + G I
Sbjct: 3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60
Query: 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGT 211
WD G R + A +L +D+T + T N++ W E +++ + +L+G
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGN 120
Query: 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
K D D + A+ A+ YA + +SAT +NV + F + +++
Sbjct: 121 KCD-----LEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIY 169
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 8/198 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Query: 265 -FNLPWTVKRNLTIGEPI 281
N P N T G +
Sbjct: 182 PKNEPQNPGANSTRGRGV 199
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 8/198 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Query: 265 -FNLPWTVKRNLTIGEPI 281
N P N T G +
Sbjct: 182 PKNEPQNPGINCTRGRGV 199
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 17/173 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V + QE ++ G + T+ V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTVSVNNATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 213
G R P+ + A A + ++D+TS +L W E +K N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKA 125
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
D D + A +AR YA+ + LFF +SA NVN IF I +L
Sbjct: 126 D-----LEDKRKVTAEEARLYAE--ENGLFFMETSAKTATNVNDIFYEIAKRL 171
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 84/180 (46%), Gaps = 7/180 (3%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQG 145
T +G +T + + K+ LLG+ +GK+S V+++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 205
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 206 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 5/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 156
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216
G P+ + + A + ++D+T T +++ W E R+ I + I D
Sbjct: 63 GQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257
+ D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 8/135 (5%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKT 140
E S FS YD ++ K+ LLGD +GKT F++++ + G++ NK
Sbjct: 17 ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71
Query: 141 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 200
+ V GAR+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEY 131
Query: 201 NQTAIPI-LIGTKFD 214
Q + I L+G K D
Sbjct: 132 AQRDVVIMLLGNKAD 146
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 125
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
D D + A A+ YA+ + LFF +SA NV +IF I +L
Sbjct: 126 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 171
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 154
++ K+ LLGD GK+S V+++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 264
D D + A +A YA+ + +LFF +SA NV IF I +L
Sbjct: 126 DLL-----DARKVSAEEAEIYAQ--ENSLFFMETSAKTATNVKDIFYEIAKRL 171
>sp|Q550H6|RB11C_DICDI Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C
PE=1 SV=1
Length = 224
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 9/170 (5%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI ++GD +GK++ + ++ NE E++ G++ K++ + I WD G
Sbjct: 11 FKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQE 70
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFD-DFV 217
R + AV + ++D+TS+ + ++ W +E R+ + I I+ +G K D +
Sbjct: 71 RFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMS 130
Query: 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
R P +A+A+A++ K + +SA ++ NVN+ F+ ++ +++L
Sbjct: 131 REVP------TKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHL 174
>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2
SV=1
Length = 217
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
KI L+GD +GKT+ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFDDFVR 218
R + AV L ++D+T R T ++++ W E R + I I++ G K D
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKAD---- 128
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
L+ + A+ + +SA NV K F+ ++A+++++
Sbjct: 129 -LNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHI 176
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 7/185 (3%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 205
I +WD G R +P +D+ A + ++D+T+ + W + R + I
Sbjct: 61 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 266 NLPWT 270
+ T
Sbjct: 176 GMEST 180
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 7/169 (4%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQE 72
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 218
R + A+ L ++D+T T ++ W E R + I I LIG K D
Sbjct: 73 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTD---- 128
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
L+ A++YA+ + +SA +NV K F+ I+++++ +
Sbjct: 129 -LKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRI 176
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 7/171 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 154
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 213
G R +P +D+ + ++D+ SR + + W E R + I +L+G K
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKT 124
Query: 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
D L Q +I +A A A+ + +SA N+ +F+ I A L
Sbjct: 125 D----LVDKRQVSIE-EAEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 7/177 (3%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARI 148
+G + + K+ LLG+ +GK+S V+++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 207
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
L G K D + + Q +A+AYA+ +SA +NVN+IF I KL
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G R
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220
+ AV L ++D+T R T +++ W E R + I I++ D L
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLR 133
Query: 221 PDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL 267
++ A A K L F +SA +N+ K F+ I+ +++++
Sbjct: 134 A------VSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHI 176
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 11/193 (5%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARI 148
+G + + K+ LLG+ +GK+S V+++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 207
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
L G K D + + Q +A+AYA +SA +NVN+IF I K L
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---L 182
Query: 268 PWTVKRNLTIGEP 280
P +N T G P
Sbjct: 183 PKNEPQNAT-GAP 194
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 11/193 (5%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARI 148
+G + + K+ LLG+ +GK+S V+++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 207
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
L G K D + + Q +A+AYA +SA +NVN+IF I K L
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---L 182
Query: 268 PWTVKRNLTIGEP 280
P +N T G P
Sbjct: 183 PKNEPQNAT-GAP 194
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 205
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 266 NLPWTVKRN 274
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 205
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 266 NLPWTVKRN 274
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 205
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 266 NLPWTVKRN 274
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA-GLNLINKTLMVQGA 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 205
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 206 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 266 NLPWTVKRN 274
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|P51156|RAB26_RAT Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2
Length = 257
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 13/198 (6%)
Query: 72 PAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSL 129
P P+ G + R S G D V+ K+ L+GD +GKT +V++ +
Sbjct: 37 PGPEAPPNGPPQSGRP-SLGGTGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI 95
Query: 130 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS 189
G++ NK L V G ++ IWD G R +DA A+L ++D+T++ + ++
Sbjct: 96 STVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDN 155
Query: 190 IVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF--SS 246
I W +E +++ Q + +L+G K D Q + + A + L F +S
Sbjct: 156 IQAWLTEIQEYAQQDVVLMLLGNKVD-------STQERVVKREDGEKLAKEYGLPFMETS 208
Query: 247 ATHNINVNKIFKFIMAKL 264
A +NV+ F I +L
Sbjct: 209 AKSGLNVDLAFTAIAKEL 226
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
Length = 218
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q39572|YPTC6_CHLRE Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6
PE=3 SV=1
Length = 216
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 85/177 (48%), Gaps = 8/177 (4%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFS 151
D D D + K+ L+GD +GK++ + ++ NE S G+ +++ V G I
Sbjct: 6 DDDYDYL-FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQ 64
Query: 152 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIG 210
IWD G R + AV L ++D+T T ++ W E R + I I L+G
Sbjct: 65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVG 124
Query: 211 TKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
K D ++ D+Q + A+A+ + + +SA + NV K F+ I+ +++++
Sbjct: 125 NKSD--LKHLRDVQTEV---AQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHI 176
>sp|O42819|SEC4_CANGA Ras-related protein SEC4 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC4 PE=3
SV=1
Length = 215
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 10/178 (5%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGAR 147
SSG D + +KI L+GD +GK+ +V++V ++ S + G++ KT+ + G +
Sbjct: 10 SSGNGKSYDSI-MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK 68
Query: 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP 206
+ +WD G R + A+ I+ ++D+T T +I W+ + N A
Sbjct: 69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQL 128
Query: 207 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
+L+G K D D + Q A AK + SSA ++ NVN+IF F +A+L
Sbjct: 129 LLVGNKSD------MDTRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIF-FTLARL 179
>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2
SV=2
Length = 214
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G R
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFD-DFVR 218
+ AV L ++D+T R T +++ W E R + I I++ G K D + +R
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 133
Query: 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
D R+ A+ + +SA N+ K F+ I+++++++
Sbjct: 134 SVAD------EDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHI 176
>sp|P41925|RYL2_YARLI Ras-like GTP-binding protein RYL2 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RYL2 PE=3 SV=2
Length = 209
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 79/170 (46%), Gaps = 6/170 (3%)
Query: 102 KISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160
KI LLG +GKT FV +YV N+ Q G + K ++V + IWD G R
Sbjct: 7 KIVLLGAQGVGKTCFVTRYVNNKFQAGQASTIGASFSRKRVVVNDTTVRLQIWDTAGQER 66
Query: 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRL 219
PI + A + +D+TSR + +++ W E ++ + I I ++GTK D V+
Sbjct: 67 FRSMAPIYYRSASCGILCYDVTSRASFDAMHLWLLELKQNLSSDIIIHIVGTKV-DLVKD 125
Query: 220 PPDLQWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFN 266
P L+ Q YA + SA + V ++F+ I+ KL +
Sbjct: 126 EPSLREVPFEQCVEYASEWLQDDSCCHEISAKDDEGVEEVFEVIITKLLD 175
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2
SV=4
Length = 218
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4
Length = 218
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q3MHP2|RB11B_BOVIN Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
Length = 218
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFVVKYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 216
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARI 148
+G + + K+ LLG+ +GK+S V+++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 207
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 208 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264
L G K D + + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,675,877
Number of Sequences: 539616
Number of extensions: 3531465
Number of successful extensions: 12278
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 553
Number of HSP's that attempted gapping in prelim test: 11620
Number of HSP's gapped (non-prelim): 752
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)