Query 023316
Match_columns 284
No_of_seqs 230 out of 2012
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023316.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023316hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.3E-42 2.9E-47 279.8 18.3 167 97-268 6-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 4.2E-41 9.1E-46 270.1 18.4 167 99-270 4-172 (200)
3 KOG0078 GTP-binding protein SE 100.0 2.4E-40 5.2E-45 270.4 18.2 170 96-270 8-179 (207)
4 KOG1673 Ras GTPases [General f 100.0 3.4E-40 7.3E-45 255.3 15.2 192 93-284 13-205 (205)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 2E-39 4.2E-44 260.6 18.2 166 98-268 20-188 (221)
6 KOG0080 GTPase Rab18, small G 100.0 1.8E-39 4E-44 252.6 16.5 176 98-278 9-188 (209)
7 KOG0098 GTPase Rab2, small G p 100.0 8.4E-40 1.8E-44 260.7 14.5 166 98-268 4-171 (216)
8 KOG0394 Ras-related GTPase [Ge 100.0 5.5E-39 1.2E-43 255.5 16.3 168 99-270 8-183 (210)
9 KOG0079 GTP-binding protein H- 100.0 5.8E-40 1.3E-44 252.0 9.8 164 100-268 8-172 (198)
10 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.2E-37 2.6E-42 258.6 21.0 181 101-281 1-182 (182)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 7.5E-38 1.6E-42 254.7 16.3 169 97-270 11-181 (222)
12 KOG0093 GTPase Rab3, small G p 100.0 3.5E-37 7.5E-42 236.5 14.6 164 99-268 20-186 (193)
13 cd04121 Rab40 Rab40 subfamily. 100.0 5.1E-36 1.1E-40 250.0 20.5 165 99-268 5-170 (189)
14 KOG0091 GTPase Rab39, small G 100.0 2.9E-37 6.2E-42 241.0 12.0 168 98-270 6-178 (213)
15 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-35 2.3E-40 250.4 20.0 169 101-274 1-173 (202)
16 KOG0086 GTPase Rab4, small G p 100.0 1.1E-36 2.4E-41 235.3 12.7 171 98-273 7-179 (214)
17 KOG0095 GTPase Rab30, small G 100.0 1.2E-36 2.5E-41 234.3 12.4 165 99-268 6-172 (213)
18 cd04133 Rop_like Rop subfamily 100.0 3.2E-35 6.8E-40 242.6 20.9 166 101-267 2-175 (176)
19 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 2.8E-35 6.1E-40 244.2 20.1 168 98-266 3-181 (182)
20 KOG0088 GTPase Rab21, small G 100.0 4.6E-36 1E-40 233.0 12.4 171 97-272 10-182 (218)
21 cd04131 Rnd Rnd subfamily. Th 100.0 1.4E-34 3E-39 239.3 20.1 165 100-265 1-176 (178)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 5.3E-34 1.2E-38 244.3 20.6 169 98-267 11-190 (232)
23 cd01875 RhoG RhoG subfamily. 100.0 7.4E-34 1.6E-38 237.6 20.4 167 100-267 3-179 (191)
24 cd04122 Rab14 Rab14 subfamily. 100.0 1.5E-33 3.3E-38 230.0 19.7 162 100-266 2-165 (166)
25 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.6E-36 1.9E-40 225.5 4.8 163 104-271 1-166 (192)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 2.6E-33 5.6E-38 238.8 19.7 168 100-268 1-179 (222)
27 cd04117 Rab15 Rab15 subfamily. 100.0 3.4E-33 7.5E-38 227.1 19.3 158 101-263 1-160 (161)
28 KOG0097 GTPase Rab14, small G 100.0 4.5E-34 9.7E-39 218.3 12.9 175 99-278 10-186 (215)
29 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 5.1E-33 1.1E-37 234.2 20.2 169 101-274 1-177 (201)
30 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.9E-33 1.3E-37 229.0 20.1 163 101-264 2-174 (175)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.9E-33 8.5E-38 229.4 18.9 163 100-268 2-167 (172)
32 PLN03071 GTP-binding nuclear p 100.0 8E-33 1.7E-37 236.1 21.5 163 98-267 11-174 (219)
33 cd01865 Rab3 Rab3 subfamily. 100.0 1.6E-32 3.5E-37 223.8 19.7 161 101-266 2-164 (165)
34 cd01867 Rab8_Rab10_Rab13_like 100.0 1.6E-32 3.4E-37 224.3 19.5 163 99-266 2-166 (167)
35 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.5E-32 3.3E-37 225.4 19.4 163 102-268 2-168 (170)
36 PF00071 Ras: Ras family; Int 100.0 1.6E-32 3.5E-37 222.6 18.0 159 102-265 1-161 (162)
37 cd04127 Rab27A Rab27a subfamil 100.0 1.9E-32 4.2E-37 226.2 18.7 163 99-266 3-178 (180)
38 KOG0081 GTPase Rab27, small G 100.0 2.1E-34 4.4E-39 224.0 6.0 165 99-268 8-184 (219)
39 cd00877 Ran Ran (Ras-related n 100.0 4.5E-32 9.8E-37 221.7 20.1 161 101-268 1-162 (166)
40 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.9E-32 8.4E-37 221.5 19.6 162 100-266 2-165 (166)
41 cd01871 Rac1_like Rac1-like su 100.0 4.1E-32 8.9E-37 223.7 19.8 162 101-263 2-173 (174)
42 cd04134 Rho3 Rho3 subfamily. 100.0 4.4E-32 9.5E-37 226.4 19.9 167 101-268 1-177 (189)
43 cd04109 Rab28 Rab28 subfamily. 100.0 3.2E-32 7E-37 231.8 19.4 163 101-268 1-169 (215)
44 cd04124 RabL2 RabL2 subfamily. 100.0 7.1E-32 1.5E-36 219.3 20.2 159 101-267 1-160 (161)
45 cd04136 Rap_like Rap-like subf 100.0 5.6E-32 1.2E-36 219.4 19.5 159 100-264 1-162 (163)
46 cd04119 RJL RJL (RabJ-Like) su 100.0 5.2E-32 1.1E-36 220.1 19.0 160 101-265 1-167 (168)
47 cd04110 Rab35 Rab35 subfamily. 100.0 7.2E-32 1.6E-36 226.9 20.5 163 100-267 6-169 (199)
48 smart00176 RAN Ran (Ras-relate 100.0 5.5E-32 1.2E-36 227.5 19.4 155 106-267 1-156 (200)
49 cd01873 RhoBTB RhoBTB subfamil 100.0 6.7E-32 1.5E-36 226.3 19.7 162 100-263 2-194 (195)
50 cd04126 Rab20 Rab20 subfamily. 100.0 5.1E-32 1.1E-36 230.6 19.2 165 101-269 1-194 (220)
51 cd04103 Centaurin_gamma Centau 100.0 8E-32 1.7E-36 218.6 18.6 154 101-263 1-157 (158)
52 cd04111 Rab39 Rab39 subfamily. 100.0 8.7E-32 1.9E-36 228.5 19.0 164 100-268 2-169 (211)
53 cd04125 RabA_like RabA-like su 100.0 1.2E-31 2.7E-36 223.3 19.5 163 101-268 1-165 (188)
54 cd04112 Rab26 Rab26 subfamily. 100.0 1.2E-31 2.5E-36 224.2 19.2 165 101-270 1-168 (191)
55 cd04175 Rap1 Rap1 subgroup. T 100.0 1.5E-31 3.1E-36 217.7 19.3 159 100-264 1-162 (164)
56 cd04144 Ras2 Ras2 subfamily. 100.0 1.1E-31 2.4E-36 224.2 18.6 163 102-270 1-168 (190)
57 cd01868 Rab11_like Rab11-like. 100.0 1.7E-31 3.6E-36 217.4 19.3 160 100-264 3-164 (165)
58 cd04176 Rap2 Rap2 subgroup. T 100.0 1.9E-31 4.2E-36 216.6 19.3 160 100-264 1-162 (163)
59 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.1E-31 6.8E-36 214.2 19.6 158 100-264 1-161 (162)
60 cd04106 Rab23_lke Rab23-like s 100.0 1.7E-31 3.7E-36 216.4 18.1 158 101-263 1-161 (162)
61 PLN03110 Rab GTPase; Provision 100.0 2.8E-31 6.1E-36 226.2 19.9 164 99-267 11-176 (216)
62 cd04132 Rho4_like Rho4-like su 100.0 2.6E-31 5.7E-36 220.9 19.2 169 101-271 1-173 (187)
63 cd04130 Wrch_1 Wrch-1 subfamil 100.0 4.3E-31 9.4E-36 217.1 20.0 162 101-262 1-171 (173)
64 cd01866 Rab2 Rab2 subfamily. 100.0 4.2E-31 9E-36 216.2 19.8 162 100-266 4-167 (168)
65 cd04118 Rab24 Rab24 subfamily. 100.0 5E-31 1.1E-35 220.4 20.6 167 101-268 1-169 (193)
66 smart00174 RHO Rho (Ras homolo 100.0 4.6E-31 1E-35 216.6 19.7 163 103-266 1-173 (174)
67 PTZ00369 Ras-like protein; Pro 100.0 4.9E-31 1.1E-35 220.0 20.0 163 99-267 4-169 (189)
68 cd01864 Rab19 Rab19 subfamily. 100.0 5.1E-31 1.1E-35 214.7 18.7 160 99-263 2-164 (165)
69 cd04116 Rab9 Rab9 subfamily. 100.0 7E-31 1.5E-35 214.9 19.5 159 99-263 4-169 (170)
70 cd04113 Rab4 Rab4 subfamily. 100.0 6.6E-31 1.4E-35 213.0 18.5 159 101-264 1-161 (161)
71 cd04140 ARHI_like ARHI subfami 100.0 1.2E-30 2.5E-35 212.9 19.5 157 101-263 2-163 (165)
72 PLN03108 Rab family protein; P 100.0 1.2E-30 2.7E-35 221.3 20.0 164 99-267 5-170 (210)
73 KOG0393 Ras-related small GTPa 100.0 1.1E-31 2.5E-36 220.2 12.4 171 99-269 3-183 (198)
74 smart00173 RAS Ras subfamily o 100.0 2E-30 4.2E-35 210.8 19.4 160 101-265 1-162 (164)
75 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.3E-30 2.9E-35 211.7 18.4 159 101-264 1-163 (164)
76 cd04142 RRP22 RRP22 subfamily. 100.0 2.2E-30 4.7E-35 217.8 20.3 165 101-270 1-179 (198)
77 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.8E-30 3.8E-35 212.9 19.1 160 100-264 2-168 (170)
78 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.4E-30 7.3E-35 209.1 19.8 159 100-264 2-163 (164)
79 cd04135 Tc10 TC10 subfamily. 100.0 7.2E-30 1.6E-34 209.5 20.4 165 101-265 1-174 (174)
80 cd01861 Rab6 Rab6 subfamily. 100.0 6E-30 1.3E-34 207.2 18.6 158 101-263 1-160 (161)
81 PLN03118 Rab family protein; P 100.0 9.9E-30 2.2E-34 215.8 20.8 168 99-271 13-183 (211)
82 smart00175 RAB Rab subfamily o 100.0 7.7E-30 1.7E-34 206.8 19.0 161 101-266 1-163 (164)
83 cd01860 Rab5_related Rab5-rela 100.0 1.5E-29 3.2E-34 205.3 19.3 160 100-264 1-162 (163)
84 cd01892 Miro2 Miro2 subfamily. 100.0 1E-29 2.3E-34 208.4 18.5 162 99-266 3-167 (169)
85 cd04146 RERG_RasL11_like RERG/ 100.0 1.3E-29 2.8E-34 206.5 17.9 158 102-265 1-164 (165)
86 cd04143 Rhes_like Rhes_like su 100.0 1.6E-29 3.5E-34 219.1 18.9 158 101-264 1-170 (247)
87 cd04148 RGK RGK subfamily. Th 100.0 2.7E-29 5.9E-34 214.6 19.7 162 101-269 1-167 (221)
88 KOG0395 Ras-related GTPase [Ge 100.0 1.1E-29 2.3E-34 212.3 16.7 163 99-266 2-166 (196)
89 cd04177 RSR1 RSR1 subgroup. R 100.0 4.9E-29 1.1E-33 203.8 19.7 160 100-265 1-164 (168)
90 cd01870 RhoA_like RhoA-like su 100.0 5.8E-29 1.3E-33 204.3 20.3 163 101-264 2-174 (175)
91 cd01862 Rab7 Rab7 subfamily. 100.0 4.5E-29 9.7E-34 204.0 19.4 162 101-267 1-169 (172)
92 cd01863 Rab18 Rab18 subfamily. 100.0 7E-29 1.5E-33 201.0 19.6 157 101-263 1-160 (161)
93 cd04123 Rab21 Rab21 subfamily. 100.0 6.5E-29 1.4E-33 200.7 19.3 159 101-264 1-161 (162)
94 cd04129 Rho2 Rho2 subfamily. 100.0 1.1E-28 2.4E-33 205.5 20.7 168 101-269 2-177 (187)
95 cd04114 Rab30 Rab30 subfamily. 100.0 2E-28 4.3E-33 199.9 19.8 161 99-264 6-168 (169)
96 cd01893 Miro1 Miro1 subfamily. 100.0 4.1E-28 8.8E-33 198.1 18.7 161 101-266 1-165 (166)
97 cd04139 RalA_RalB RalA/RalB su 100.0 5.6E-28 1.2E-32 195.7 19.4 159 101-265 1-162 (164)
98 cd04149 Arf6 Arf6 subfamily. 100.0 1.2E-28 2.6E-33 201.9 14.4 152 100-262 9-167 (168)
99 PTZ00132 GTP-binding nuclear p 100.0 9.7E-28 2.1E-32 204.1 20.4 166 97-269 6-172 (215)
100 smart00177 ARF ARF-like small 100.0 1.1E-28 2.4E-33 203.4 14.1 155 100-265 13-174 (175)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.8E-28 3.8E-33 199.0 15.1 152 101-262 1-158 (159)
102 cd00157 Rho Rho (Ras homology) 100.0 1.7E-27 3.6E-32 194.5 19.5 162 101-262 1-170 (171)
103 cd04158 ARD1 ARD1 subfamily. 100.0 3.8E-28 8.1E-33 199.0 15.5 157 102-269 1-165 (169)
104 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.1E-27 2.4E-32 201.5 18.4 150 101-251 1-176 (202)
105 cd00154 Rab Rab family. Rab G 100.0 1.1E-27 2.5E-32 191.9 17.6 156 101-261 1-158 (159)
106 cd04147 Ras_dva Ras-dva subfam 100.0 1.9E-27 4.1E-32 199.8 19.3 164 102-269 1-167 (198)
107 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 3.9E-28 8.5E-33 201.5 14.9 167 100-273 3-178 (183)
108 PLN00223 ADP-ribosylation fact 100.0 5.6E-28 1.2E-32 200.3 15.1 154 100-267 17-180 (181)
109 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.2E-28 4.9E-33 199.5 12.5 152 103-262 2-163 (164)
110 cd00876 Ras Ras family. The R 100.0 3.7E-27 8.1E-32 190.0 17.5 157 102-264 1-160 (160)
111 PTZ00133 ADP-ribosylation fact 100.0 8.8E-28 1.9E-32 199.3 13.6 158 100-267 17-180 (182)
112 cd04137 RheB Rheb (Ras Homolog 100.0 7.3E-27 1.6E-31 192.9 18.6 167 101-273 2-171 (180)
113 cd04154 Arl2 Arl2 subfamily. 99.9 5.9E-27 1.3E-31 192.5 15.4 153 99-262 13-172 (173)
114 KOG4252 GTP-binding protein [S 99.9 7E-29 1.5E-33 196.8 2.2 168 98-270 18-186 (246)
115 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.2E-27 1.3E-31 189.3 12.9 155 102-262 1-159 (160)
116 PLN00023 GTP-binding protein; 99.9 2.4E-26 5.3E-31 202.9 17.2 141 97-240 18-189 (334)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.2E-26 7E-31 188.4 14.6 153 100-262 15-173 (174)
118 cd04157 Arl6 Arl6 subfamily. 99.9 2.2E-26 4.7E-31 186.3 12.4 153 102-262 1-161 (162)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1.9E-26 4.2E-31 186.5 11.7 151 102-262 1-157 (158)
120 PTZ00099 rab6; Provisional 99.9 2.1E-25 4.5E-30 184.0 17.7 143 123-270 3-147 (176)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-25 4.8E-30 180.0 14.1 150 102-262 1-157 (158)
122 cd00879 Sar1 Sar1 subfamily. 99.9 4.9E-25 1.1E-29 183.6 15.2 154 99-263 18-189 (190)
123 cd04161 Arl2l1_Arl13_like Arl2 99.9 2.7E-25 5.8E-30 181.8 12.7 152 102-262 1-166 (167)
124 PRK12299 obgE GTPase CgtA; Rev 99.9 9.8E-25 2.1E-29 196.5 17.5 205 43-267 111-330 (335)
125 cd04160 Arfrp1 Arfrp1 subfamil 99.9 3.2E-25 7E-30 180.5 11.3 150 102-262 1-166 (167)
126 TIGR02729 Obg_CgtA Obg family 99.9 5E-24 1.1E-28 191.7 17.8 201 43-264 110-328 (329)
127 COG1100 GTPase SAR1 and relate 99.9 9.4E-24 2E-28 179.6 16.7 170 100-269 5-189 (219)
128 smart00178 SAR Sar1p-like memb 99.9 3.2E-24 6.9E-29 178.2 13.2 153 100-263 17-183 (184)
129 cd01897 NOG NOG1 is a nucleola 99.9 1.8E-23 4E-28 170.3 17.1 155 102-265 2-168 (168)
130 cd04159 Arl10_like Arl10-like 99.9 6.4E-24 1.4E-28 170.2 13.5 151 102-262 1-158 (159)
131 cd01898 Obg Obg subfamily. Th 99.9 1.7E-23 3.6E-28 170.8 16.2 155 102-263 2-169 (170)
132 cd01890 LepA LepA subfamily. 99.9 1.7E-23 3.7E-28 172.4 16.2 153 102-264 2-176 (179)
133 TIGR02528 EutP ethanolamine ut 99.9 3.7E-24 8E-29 170.0 10.1 134 102-261 2-141 (142)
134 PF00025 Arf: ADP-ribosylation 99.9 3.8E-23 8.2E-28 170.5 15.7 156 98-264 12-175 (175)
135 KOG0073 GTP-binding ADP-ribosy 99.9 4.7E-23 1E-27 161.6 15.1 163 99-266 15-179 (185)
136 TIGR00231 small_GTP small GTP- 99.9 1.3E-22 2.9E-27 161.7 17.1 155 100-260 1-159 (161)
137 cd04171 SelB SelB subfamily. 99.9 6.7E-23 1.5E-27 165.8 14.4 152 102-262 2-163 (164)
138 cd04155 Arl3 Arl3 subfamily. 99.9 5.9E-23 1.3E-27 168.2 14.2 149 100-262 14-172 (173)
139 PRK12297 obgE GTPase CgtA; Rev 99.9 1E-22 2.2E-27 187.9 17.4 203 43-269 111-331 (424)
140 PRK03003 GTP-binding protein D 99.9 1.3E-22 2.8E-27 191.5 15.9 254 4-270 107-387 (472)
141 KOG0070 GTP-binding ADP-ribosy 99.9 7.4E-23 1.6E-27 164.4 12.1 163 97-267 14-180 (181)
142 PRK15494 era GTPase Era; Provi 99.9 1.5E-21 3.3E-26 176.7 20.0 169 98-280 50-231 (339)
143 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 8.7E-23 1.9E-27 163.7 10.0 165 98-269 8-173 (216)
144 PRK12296 obgE GTPase CgtA; Rev 99.9 7.5E-22 1.6E-26 184.5 17.7 208 43-268 112-343 (500)
145 PRK12298 obgE GTPase CgtA; Rev 99.9 7.2E-22 1.6E-26 181.2 17.3 217 42-279 111-347 (390)
146 cd01878 HflX HflX subfamily. 99.9 3.1E-22 6.7E-27 168.8 13.7 154 100-264 41-204 (204)
147 COG1160 Predicted GTPases [Gen 99.9 4.4E-22 9.6E-27 180.4 14.9 261 2-268 71-354 (444)
148 cd01879 FeoB Ferrous iron tran 99.9 1.1E-21 2.5E-26 157.8 15.5 147 105-264 1-156 (158)
149 TIGR03594 GTPase_EngA ribosome 99.9 1.5E-21 3.3E-26 182.5 17.3 257 4-267 68-346 (429)
150 TIGR00436 era GTP-binding prot 99.9 4.2E-21 9.1E-26 168.9 17.8 167 102-280 2-179 (270)
151 PF08477 Miro: Miro-like prote 99.9 1.3E-21 2.7E-26 150.7 12.2 113 102-214 1-119 (119)
152 cd01891 TypA_BipA TypA (tyrosi 99.9 1.9E-21 4.2E-26 162.7 13.5 148 101-255 3-172 (194)
153 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 7.1E-21 1.5E-25 154.8 14.9 157 102-265 2-166 (168)
154 KOG4423 GTP-binding protein-li 99.9 3.4E-23 7.4E-28 165.5 1.0 168 97-268 22-197 (229)
155 cd00882 Ras_like_GTPase Ras-li 99.9 1.3E-20 2.8E-25 148.6 15.7 153 105-261 1-156 (157)
156 PRK04213 GTP-binding protein; 99.9 9.4E-22 2E-26 165.3 9.4 149 100-267 9-194 (201)
157 TIGR03156 GTP_HflX GTP-binding 99.9 5.3E-21 1.1E-25 173.6 14.7 151 100-263 189-350 (351)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.3E-20 2.8E-25 175.7 17.1 150 100-267 203-362 (442)
159 cd01881 Obg_like The Obg-like 99.8 2E-20 4.4E-25 153.1 13.8 152 105-263 1-175 (176)
160 PRK03003 GTP-binding protein D 99.8 1.7E-20 3.6E-25 177.2 15.0 153 100-266 38-200 (472)
161 KOG0075 GTP-binding ADP-ribosy 99.8 1.6E-21 3.6E-26 150.2 6.6 160 99-264 19-181 (186)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.8 6.4E-20 1.4E-24 147.0 15.8 145 101-264 2-156 (157)
163 KOG3883 Ras family small GTPas 99.8 1.2E-19 2.6E-24 140.8 15.6 164 100-268 9-178 (198)
164 KOG0071 GTP-binding ADP-ribosy 99.8 4.3E-20 9.3E-25 141.3 12.5 158 100-265 17-178 (180)
165 PRK15467 ethanolamine utilizat 99.8 2.8E-20 6E-25 150.9 11.3 140 102-266 3-148 (158)
166 PRK05291 trmE tRNA modificatio 99.8 6.5E-20 1.4E-24 171.8 15.4 147 100-266 215-371 (449)
167 cd01889 SelB_euk SelB subfamil 99.8 5.9E-20 1.3E-24 153.5 13.1 160 101-266 1-187 (192)
168 cd00881 GTP_translation_factor 99.8 1.1E-19 2.3E-24 150.4 14.2 155 102-264 1-186 (189)
169 cd01894 EngA1 EngA1 subfamily. 99.8 1.5E-19 3.2E-24 145.0 13.9 145 104-263 1-156 (157)
170 PRK11058 GTPase HflX; Provisio 99.8 1.7E-19 3.7E-24 167.4 16.3 156 101-267 198-364 (426)
171 PRK09518 bifunctional cytidyla 99.8 9E-20 1.9E-24 179.9 15.2 257 4-268 344-624 (712)
172 PF02421 FeoB_N: Ferrous iron 99.8 7.3E-20 1.6E-24 146.7 11.8 147 101-260 1-156 (156)
173 PRK00093 GTP-binding protein D 99.8 2.5E-19 5.5E-24 167.9 16.9 250 4-266 70-345 (435)
174 TIGR01393 lepA GTP-binding pro 99.8 3.2E-19 6.9E-24 171.9 17.0 157 101-267 4-182 (595)
175 cd01895 EngA2 EngA2 subfamily. 99.8 1.2E-18 2.5E-23 141.7 17.8 155 100-263 2-173 (174)
176 cd04105 SR_beta Signal recogni 99.8 1.8E-19 3.8E-24 152.0 13.2 119 102-220 2-126 (203)
177 PRK00454 engB GTP-binding prot 99.8 4.1E-19 9E-24 148.4 14.3 156 99-265 23-194 (196)
178 TIGR00437 feoB ferrous iron tr 99.8 6.8E-19 1.5E-23 169.7 14.8 145 107-264 1-154 (591)
179 PRK00089 era GTPase Era; Revie 99.8 3.5E-18 7.7E-23 152.0 18.3 172 99-280 4-186 (292)
180 PRK00093 GTP-binding protein D 99.8 1.2E-18 2.7E-23 163.2 15.3 147 101-264 2-161 (435)
181 TIGR00487 IF-2 translation ini 99.8 3E-18 6.6E-23 164.5 17.5 157 98-262 85-247 (587)
182 TIGR03598 GTPase_YsxC ribosome 99.8 1E-18 2.2E-23 144.4 12.0 148 98-254 16-179 (179)
183 TIGR00475 selB selenocysteine- 99.8 2.5E-18 5.5E-23 165.6 15.3 156 101-267 1-168 (581)
184 cd04163 Era Era subfamily. Er 99.8 7.2E-18 1.6E-22 135.9 15.4 154 100-263 3-167 (168)
185 cd01888 eIF2_gamma eIF2-gamma 99.8 3E-18 6.5E-23 144.5 12.8 159 101-267 1-201 (203)
186 cd01896 DRG The developmentall 99.8 1.7E-17 3.6E-22 142.8 16.5 149 102-264 2-225 (233)
187 CHL00189 infB translation init 99.8 6.7E-18 1.5E-22 164.6 15.0 159 99-264 243-409 (742)
188 TIGR03594 GTPase_EngA ribosome 99.8 6.7E-18 1.5E-22 157.9 14.5 148 102-266 1-161 (429)
189 PRK05306 infB translation init 99.8 1.7E-17 3.6E-22 163.1 17.3 158 97-263 287-450 (787)
190 COG0536 Obg Predicted GTPase [ 99.8 2E-17 4.4E-22 144.8 14.9 207 42-268 111-336 (369)
191 PRK09518 bifunctional cytidyla 99.8 2.5E-17 5.5E-22 162.6 16.7 153 100-266 275-437 (712)
192 cd00880 Era_like Era (E. coli 99.7 2.9E-17 6.4E-22 130.8 13.9 152 105-263 1-162 (163)
193 COG1159 Era GTPase [General fu 99.7 4.8E-17 1.1E-21 140.5 15.9 173 99-281 5-188 (298)
194 cd01876 YihA_EngB The YihA (En 99.7 2.5E-17 5.4E-22 133.1 13.1 151 102-263 1-169 (170)
195 KOG0072 GTP-binding ADP-ribosy 99.7 2.9E-18 6.2E-23 131.9 6.9 160 99-266 17-180 (182)
196 PRK05433 GTP-binding protein L 99.7 3.8E-17 8.2E-22 157.7 16.3 158 100-267 7-186 (600)
197 PRK09554 feoB ferrous iron tra 99.7 7.1E-17 1.5E-21 159.3 17.7 152 100-264 3-167 (772)
198 COG1160 Predicted GTPases [Gen 99.7 8.6E-17 1.9E-21 146.2 15.3 148 101-265 4-165 (444)
199 KOG1707 Predicted Ras related/ 99.7 1.2E-17 2.5E-22 154.5 9.2 165 97-266 6-176 (625)
200 PRK12317 elongation factor 1-a 99.7 5.4E-17 1.2E-21 151.6 13.2 156 98-257 4-197 (425)
201 TIGR00483 EF-1_alpha translati 99.7 4.9E-17 1.1E-21 151.9 11.9 157 98-257 5-199 (426)
202 KOG0076 GTP-binding ADP-ribosy 99.7 1.5E-17 3.3E-22 131.9 6.9 161 99-267 16-189 (197)
203 TIGR00491 aIF-2 translation in 99.7 1.1E-16 2.4E-21 153.6 14.1 157 101-263 5-214 (590)
204 COG0486 ThdF Predicted GTPase 99.7 1.6E-16 3.4E-21 144.8 14.2 152 100-267 217-378 (454)
205 KOG0074 GTP-binding ADP-ribosy 99.7 1E-16 2.2E-21 123.0 9.5 157 98-263 15-177 (185)
206 KOG1489 Predicted GTP-binding 99.7 4.5E-16 9.8E-21 134.8 14.7 199 41-262 147-364 (366)
207 PRK10218 GTP-binding protein; 99.7 5.6E-16 1.2E-20 149.2 16.5 161 100-267 5-197 (607)
208 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 4.2E-16 9.2E-21 133.0 13.7 172 102-277 1-188 (232)
209 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.3E-16 2.8E-21 135.1 10.0 149 102-256 1-185 (208)
210 COG2229 Predicted GTPase [Gene 99.7 2.1E-15 4.5E-20 121.3 15.0 155 97-263 7-176 (187)
211 TIGR03680 eif2g_arch translati 99.7 4.5E-16 9.8E-21 144.4 12.2 163 99-265 3-196 (406)
212 PF00009 GTP_EFTU: Elongation 99.7 4.8E-16 1E-20 129.5 11.2 158 100-264 3-186 (188)
213 TIGR01394 TypA_BipA GTP-bindin 99.7 8E-16 1.7E-20 148.2 13.9 159 102-267 3-193 (594)
214 cd04167 Snu114p Snu114p subfam 99.7 4.9E-16 1.1E-20 132.0 10.9 150 102-254 2-192 (213)
215 PRK10512 selenocysteinyl-tRNA- 99.7 1.3E-15 2.8E-20 147.4 15.1 154 102-266 2-167 (614)
216 PRK04004 translation initiatio 99.7 1.4E-15 2.9E-20 146.5 14.8 158 99-262 5-215 (586)
217 KOG1423 Ras-like GTPase ERA [C 99.7 1.8E-15 4E-20 130.5 13.0 180 93-280 65-286 (379)
218 PRK04000 translation initiatio 99.6 1.7E-15 3.6E-20 140.7 13.1 160 98-265 7-201 (411)
219 cd04168 TetM_like Tet(M)-like 99.6 8.1E-15 1.8E-19 126.4 13.0 112 102-216 1-129 (237)
220 cd01899 Ygr210 Ygr210 subfamil 99.6 1.9E-14 4.1E-19 128.8 15.4 80 103-182 1-110 (318)
221 cd04104 p47_IIGP_like p47 (47- 99.6 1.7E-14 3.6E-19 121.2 13.4 163 100-268 1-187 (197)
222 cd01850 CDC_Septin CDC/Septin. 99.6 1.4E-14 3E-19 127.6 13.1 142 100-248 4-185 (276)
223 cd01883 EF1_alpha Eukaryotic e 99.6 1.1E-14 2.4E-19 124.2 10.5 149 102-254 1-194 (219)
224 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.1E-14 6.7E-19 121.8 12.6 153 102-262 1-220 (224)
225 COG0370 FeoB Fe2+ transport sy 99.6 5.1E-14 1.1E-18 133.6 15.1 156 100-268 3-167 (653)
226 cd01884 EF_Tu EF-Tu subfamily. 99.6 7.1E-14 1.5E-18 117.1 14.0 149 100-254 2-172 (195)
227 KOG0077 Vesicle coat complex C 99.6 6.8E-15 1.5E-19 116.1 7.2 160 100-264 20-192 (193)
228 PF10662 PduV-EutP: Ethanolami 99.6 3.7E-14 7.9E-19 111.5 10.9 133 102-260 3-141 (143)
229 PRK12735 elongation factor Tu; 99.5 1.1E-13 2.4E-18 128.1 14.7 162 98-264 10-202 (396)
230 TIGR00485 EF-Tu translation el 99.5 1.3E-13 2.8E-18 127.7 14.3 148 98-251 10-179 (394)
231 cd01885 EF2 EF2 (for archaea a 99.5 1.3E-13 2.9E-18 117.5 12.3 111 102-215 2-137 (222)
232 PRK12736 elongation factor Tu; 99.5 2.2E-13 4.8E-18 126.0 14.5 162 98-265 10-201 (394)
233 smart00010 small_GTPase Small 99.5 1.6E-14 3.5E-19 111.3 5.2 112 101-254 1-115 (124)
234 COG0218 Predicted GTPase [Gene 99.5 3.7E-13 8.1E-18 110.6 12.9 152 100-265 24-197 (200)
235 cd04169 RF3 RF3 subfamily. Pe 99.5 4.5E-13 9.7E-18 117.5 13.9 112 101-215 3-135 (267)
236 COG1163 DRG Predicted GTPase [ 99.5 1.5E-12 3.2E-17 113.6 16.2 150 101-264 64-288 (365)
237 PRK09602 translation-associate 99.5 8.7E-13 1.9E-17 121.5 15.7 82 101-182 2-113 (396)
238 COG2262 HflX GTPases [General 99.5 9.3E-13 2E-17 118.4 15.2 160 100-271 192-362 (411)
239 KOG1191 Mitochondrial GTPase [ 99.5 3E-13 6.5E-18 123.5 10.8 159 100-265 268-450 (531)
240 PRK13351 elongation factor G; 99.5 3.6E-13 7.9E-18 132.9 12.3 112 100-216 8-138 (687)
241 COG1084 Predicted GTPase [Gene 99.5 1.7E-12 3.7E-17 113.6 14.6 158 100-267 168-338 (346)
242 TIGR02034 CysN sulfate adenyly 99.4 5.3E-13 1.2E-17 123.9 10.9 150 101-255 1-187 (406)
243 PRK05124 cysN sulfate adenylyl 99.4 5.9E-13 1.3E-17 125.7 11.3 156 98-256 25-216 (474)
244 KOG0462 Elongation factor-type 99.4 3.5E-12 7.6E-17 117.8 15.7 163 100-269 60-239 (650)
245 PRK00741 prfC peptide chain re 99.4 2E-12 4.4E-17 123.2 14.4 115 99-216 9-144 (526)
246 PF01926 MMR_HSR1: 50S ribosom 99.4 2.6E-12 5.6E-17 98.4 12.4 105 102-212 1-116 (116)
247 CHL00071 tufA elongation facto 99.4 3.7E-12 8E-17 118.5 14.5 150 98-253 10-181 (409)
248 PF05783 DLIC: Dynein light in 99.4 3.4E-12 7.4E-17 119.3 14.2 180 100-281 25-280 (472)
249 KOG3905 Dynein light intermedi 99.4 4E-12 8.7E-17 110.7 13.1 175 100-276 52-301 (473)
250 cd04170 EF-G_bact Elongation f 99.4 2.7E-12 5.9E-17 112.8 12.2 146 102-259 1-167 (268)
251 TIGR00503 prfC peptide chain r 99.4 4E-12 8.8E-17 121.2 13.9 115 99-216 10-145 (527)
252 PLN03126 Elongation factor Tu; 99.4 2.2E-12 4.7E-17 121.5 11.9 150 97-252 78-249 (478)
253 PLN00043 elongation factor 1-a 99.4 2.3E-12 5E-17 120.7 11.9 155 98-255 5-203 (447)
254 PRK05506 bifunctional sulfate 99.4 2.5E-12 5.3E-17 125.9 12.1 152 99-255 23-211 (632)
255 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 1.9E-11 4.2E-16 102.4 15.5 159 101-266 1-185 (196)
256 PRK00049 elongation factor Tu; 99.4 9.8E-12 2.1E-16 115.1 15.0 161 98-264 10-202 (396)
257 PF09439 SRPRB: Signal recogni 99.4 6.3E-13 1.4E-17 109.0 5.2 116 102-220 5-129 (181)
258 TIGR00157 ribosome small subun 99.4 6E-12 1.3E-16 109.1 11.3 96 159-262 24-120 (245)
259 COG0532 InfB Translation initi 99.3 2.5E-11 5.4E-16 112.5 14.4 154 101-264 6-169 (509)
260 cd01886 EF-G Elongation factor 99.3 1.2E-11 2.7E-16 108.6 11.8 109 102-215 1-128 (270)
261 KOG3886 GTP-binding protein [S 99.3 2.9E-12 6.4E-17 106.7 6.9 170 100-274 4-187 (295)
262 PLN03127 Elongation factor Tu; 99.3 5.8E-11 1.3E-15 111.3 15.6 161 97-265 58-252 (447)
263 PTZ00141 elongation factor 1- 99.3 2.9E-11 6.2E-16 113.4 13.1 155 98-255 5-203 (446)
264 COG0481 LepA Membrane GTPase L 99.3 4.7E-11 1E-15 108.8 13.5 159 101-269 10-190 (603)
265 PTZ00327 eukaryotic translatio 99.3 3.4E-11 7.4E-16 112.8 12.3 163 98-265 32-233 (460)
266 TIGR00484 EF-G translation elo 99.3 5.2E-11 1.1E-15 117.6 12.5 111 100-215 10-139 (689)
267 PRK13768 GTPase; Provisional 99.2 6.1E-11 1.3E-15 103.3 10.6 114 149-265 98-247 (253)
268 PRK14845 translation initiatio 99.2 1.3E-10 2.8E-15 117.5 14.1 146 111-263 472-671 (1049)
269 KOG0090 Signal recognition par 99.2 5.5E-11 1.2E-15 98.0 9.2 157 102-263 40-237 (238)
270 COG3596 Predicted GTPase [Gene 99.2 9.6E-11 2.1E-15 100.5 10.4 168 97-267 36-224 (296)
271 TIGR00490 aEF-2 translation el 99.2 6.8E-11 1.5E-15 117.2 10.9 113 100-215 19-150 (720)
272 KOG1707 Predicted Ras related/ 99.2 4.5E-10 9.8E-15 104.7 15.4 163 97-268 422-586 (625)
273 PRK12740 elongation factor G; 99.2 8.6E-11 1.9E-15 115.9 10.9 106 106-216 1-125 (668)
274 PRK12739 elongation factor G; 99.2 2.3E-10 4.9E-15 113.1 13.5 112 100-216 8-138 (691)
275 PRK09866 hypothetical protein; 99.2 9.9E-10 2.1E-14 104.6 16.1 108 149-262 231-350 (741)
276 TIGR00101 ureG urease accessor 99.2 5.7E-10 1.2E-14 93.7 12.7 104 149-265 93-196 (199)
277 PTZ00258 GTP-binding protein; 99.2 7.6E-10 1.7E-14 101.3 14.3 84 99-182 20-126 (390)
278 COG5256 TEF1 Translation elong 99.2 2.6E-10 5.6E-15 102.8 10.8 158 98-256 5-202 (428)
279 PRK09601 GTP-binding protein Y 99.1 1E-09 2.2E-14 99.4 14.5 82 101-182 3-107 (364)
280 KOG0705 GTPase-activating prot 99.1 1.2E-10 2.6E-15 107.6 8.4 166 93-268 23-192 (749)
281 cd00066 G-alpha G protein alph 99.1 1.2E-09 2.6E-14 98.3 14.4 121 147-267 160-313 (317)
282 TIGR00991 3a0901s02IAP34 GTP-b 99.1 6.4E-10 1.4E-14 98.4 12.2 116 97-215 35-165 (313)
283 COG4917 EutP Ethanolamine util 99.1 1.9E-10 4.2E-15 87.0 7.4 137 102-263 3-144 (148)
284 KOG1145 Mitochondrial translat 99.1 7.9E-10 1.7E-14 102.4 13.0 154 100-264 153-315 (683)
285 KOG1490 GTP-binding protein CR 99.1 4.2E-10 9.1E-15 103.2 10.5 163 100-267 168-343 (620)
286 PRK00007 elongation factor G; 99.1 6.1E-10 1.3E-14 110.0 12.4 112 100-216 10-140 (693)
287 cd01853 Toc34_like Toc34-like 99.1 3.1E-09 6.8E-14 92.2 14.9 115 98-215 29-161 (249)
288 smart00275 G_alpha G protein a 99.0 5.1E-09 1.1E-13 95.1 14.6 121 148-268 184-337 (342)
289 PF04548 AIG1: AIG1 family; I 99.0 7.7E-09 1.7E-13 87.8 13.9 160 101-267 1-188 (212)
290 COG1217 TypA Predicted membran 99.0 8.3E-09 1.8E-13 94.2 13.6 161 101-268 6-198 (603)
291 PRK09435 membrane ATPase/prote 99.0 5.4E-09 1.2E-13 94.0 11.4 105 148-265 149-260 (332)
292 TIGR00073 hypB hydrogenase acc 98.9 2.8E-08 6.1E-13 84.0 14.0 148 100-263 22-205 (207)
293 KOG1486 GTP-binding protein DR 98.9 3.2E-08 6.8E-13 83.9 13.8 152 100-265 62-288 (364)
294 COG2895 CysN GTPases - Sulfate 98.9 1.3E-08 2.7E-13 90.2 11.1 151 99-254 5-192 (431)
295 cd01882 BMS1 Bms1. Bms1 is an 98.9 2.2E-08 4.7E-13 85.8 12.1 140 100-252 39-183 (225)
296 PRK07560 elongation factor EF- 98.9 2.1E-08 4.5E-13 99.9 13.1 113 100-215 20-151 (731)
297 TIGR02836 spore_IV_A stage IV 98.9 9.7E-08 2.1E-12 87.0 15.9 154 100-262 17-234 (492)
298 KOG1144 Translation initiation 98.9 1.4E-08 3.1E-13 96.9 10.4 158 97-264 472-686 (1064)
299 COG0012 Predicted GTPase, prob 98.8 1.3E-07 2.9E-12 84.8 15.2 83 100-182 2-108 (372)
300 cd01855 YqeH YqeH. YqeH is an 98.8 1.7E-08 3.6E-13 84.1 8.0 94 161-265 24-125 (190)
301 TIGR00993 3a0901s04IAP86 chlor 98.8 1.7E-07 3.7E-12 89.9 15.2 182 7-215 48-248 (763)
302 TIGR03597 GTPase_YqeH ribosome 98.8 2.2E-08 4.7E-13 91.7 8.2 98 158-263 50-151 (360)
303 cd01900 YchF YchF subfamily. 98.8 3.9E-08 8.4E-13 86.3 9.4 79 103-181 1-102 (274)
304 PTZ00416 elongation factor 2; 98.8 2.6E-08 5.6E-13 100.3 9.2 113 100-215 19-156 (836)
305 PLN00116 translation elongatio 98.8 2.5E-08 5.5E-13 100.5 9.1 113 100-215 19-162 (843)
306 KOG0461 Selenocysteine-specifi 98.8 1.5E-07 3.4E-12 83.1 12.5 163 99-271 6-199 (522)
307 PF00350 Dynamin_N: Dynamin fa 98.7 3.1E-08 6.7E-13 80.5 7.8 62 150-213 103-168 (168)
308 PF00735 Septin: Septin; Inte 98.7 1.4E-07 2.9E-12 83.4 12.2 140 100-246 4-182 (281)
309 KOG3887 Predicted small GTPase 98.7 4.6E-08 1E-12 82.4 8.1 169 101-275 28-212 (347)
310 TIGR00750 lao LAO/AO transport 98.7 2.4E-07 5.2E-12 82.8 13.2 105 147-264 126-237 (300)
311 PF03029 ATP_bind_1: Conserved 98.7 8.4E-09 1.8E-13 89.0 3.6 112 149-263 92-235 (238)
312 PRK00098 GTPase RsgA; Reviewed 98.7 1E-07 2.2E-12 85.0 9.7 86 168-261 77-163 (298)
313 PRK12289 GTPase RsgA; Reviewed 98.7 1.4E-07 2.9E-12 85.9 10.5 94 160-262 78-172 (352)
314 COG5257 GCD11 Translation init 98.7 7.2E-08 1.6E-12 84.4 7.8 168 99-270 9-207 (415)
315 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2.3E-07 5E-12 82.4 10.4 88 166-262 73-161 (287)
316 KOG1532 GTPase XAB1, interacts 98.6 3.6E-07 7.7E-12 78.6 10.6 117 147-266 115-265 (366)
317 PRK12288 GTPase RsgA; Reviewed 98.6 3E-07 6.5E-12 83.6 10.7 88 169-262 118-205 (347)
318 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 9.6E-08 2.1E-12 75.7 6.3 134 5-159 2-139 (141)
319 KOG0082 G-protein alpha subuni 98.6 2E-07 4.3E-12 83.8 8.1 122 148-269 195-348 (354)
320 cd01859 MJ1464 MJ1464. This f 98.6 2E-07 4.3E-12 75.0 7.2 94 162-265 3-96 (156)
321 COG3276 SelB Selenocysteine-sp 98.5 5.2E-07 1.1E-11 82.3 10.1 159 102-265 2-162 (447)
322 KOG0410 Predicted GTP binding 98.5 1.6E-07 3.4E-12 82.5 5.4 148 101-267 179-343 (410)
323 KOG0458 Elongation factor 1 al 98.5 2.6E-06 5.5E-11 80.1 13.5 157 98-256 175-373 (603)
324 PRK10463 hydrogenase nickel in 98.5 7.5E-07 1.6E-11 78.4 9.1 54 205-263 232-287 (290)
325 PF05049 IIGP: Interferon-indu 98.4 3.1E-07 6.6E-12 83.5 6.1 163 99-268 34-221 (376)
326 COG0378 HypB Ni2+-binding GTPa 98.4 1.7E-06 3.7E-11 71.1 9.7 78 173-264 119-200 (202)
327 KOG0468 U5 snRNP-specific prot 98.4 1.8E-06 3.9E-11 82.1 10.1 115 98-215 126-261 (971)
328 COG0480 FusA Translation elong 98.4 3E-06 6.5E-11 83.1 11.8 112 100-215 10-140 (697)
329 smart00053 DYNc Dynamin, GTPas 98.4 3E-06 6.4E-11 73.1 10.4 25 100-124 26-50 (240)
330 cd01859 MJ1464 MJ1464. This f 98.4 9.3E-07 2E-11 71.1 6.7 56 100-158 101-156 (156)
331 cd01856 YlqF YlqF. Proteins o 98.3 1.1E-06 2.4E-11 71.9 6.5 55 99-158 114-170 (171)
332 cd04178 Nucleostemin_like Nucl 98.3 1.4E-06 2.9E-11 71.5 6.5 54 100-158 117-172 (172)
333 cd01858 NGP_1 NGP-1. Autoanti 98.3 1.9E-06 4.1E-11 69.5 6.8 54 100-158 102-157 (157)
334 KOG4273 Uncharacterized conser 98.3 9.6E-06 2.1E-10 69.0 11.1 161 102-265 6-222 (418)
335 TIGR00092 GTP-binding protein 98.3 6.2E-06 1.3E-10 75.0 10.5 82 101-182 3-108 (368)
336 PRK13796 GTPase YqeH; Provisio 98.3 6.9E-06 1.5E-10 75.4 10.3 87 170-264 67-158 (365)
337 cd01858 NGP_1 NGP-1. Autoanti 98.2 5.7E-06 1.2E-10 66.6 8.2 88 168-264 5-94 (157)
338 PRK09563 rbgA GTPase YlqF; Rev 98.2 4.2E-06 9.1E-11 74.3 7.5 152 1-160 11-178 (287)
339 TIGR03596 GTPase_YlqF ribosome 98.2 3.6E-06 7.7E-11 74.4 7.0 151 1-159 8-174 (276)
340 COG5019 CDC3 Septin family pro 98.2 2.9E-05 6.4E-10 69.6 12.4 139 99-244 22-200 (373)
341 cd01849 YlqF_related_GTPase Yl 98.2 1.4E-05 3E-10 64.3 8.9 84 173-264 1-84 (155)
342 KOG2655 Septin family protein 98.1 7.3E-05 1.6E-09 67.5 13.8 142 100-248 21-200 (366)
343 KOG2486 Predicted GTPase [Gene 98.1 3.3E-06 7.2E-11 72.8 4.9 156 98-262 134-313 (320)
344 COG5258 GTPBP1 GTPase [General 98.1 3.4E-05 7.3E-10 69.5 10.9 157 97-259 114-333 (527)
345 PF03308 ArgK: ArgK protein; 98.1 7.3E-06 1.6E-10 70.5 6.5 149 100-264 29-229 (266)
346 KOG1491 Predicted GTP-binding 98.1 1E-05 2.2E-10 71.7 6.9 83 99-181 19-124 (391)
347 KOG1954 Endocytosis/signaling 98.0 3.2E-05 6.9E-10 69.3 9.6 110 102-215 60-223 (532)
348 COG0050 TufB GTPases - transla 98.0 2.4E-05 5.2E-10 68.1 8.5 164 98-267 10-203 (394)
349 COG1161 Predicted GTPases [Gen 98.0 1.1E-05 2.4E-10 72.8 6.4 57 99-160 131-189 (322)
350 KOG1487 GTP-binding protein DR 98.0 2.7E-05 5.8E-10 66.7 8.1 85 101-187 60-152 (358)
351 KOG1547 Septin CDC10 and relat 98.0 4.7E-05 1E-09 64.5 9.0 156 100-262 46-240 (336)
352 cd01855 YqeH YqeH. YqeH is an 98.0 1.2E-05 2.6E-10 66.8 5.6 53 101-158 128-190 (190)
353 cd01857 HSR1_MMR1 HSR1/MMR1. 98.0 2.6E-05 5.7E-10 61.6 7.2 76 167-252 7-84 (141)
354 COG1703 ArgK Putative periplas 98.0 0.00014 3.1E-09 63.7 12.0 103 148-264 144-253 (323)
355 TIGR03348 VI_IcmF type VI secr 98.0 2.7E-05 5.9E-10 81.5 9.0 108 103-215 114-255 (1169)
356 COG4108 PrfC Peptide chain rel 97.9 0.00014 2.9E-09 66.7 11.6 112 100-215 12-145 (528)
357 cd01851 GBP Guanylate-binding 97.9 4.2E-05 9E-10 65.5 7.8 83 100-183 7-103 (224)
358 cd01849 YlqF_related_GTPase Yl 97.9 3.3E-05 7.1E-10 62.1 6.7 54 100-158 100-155 (155)
359 KOG1143 Predicted translation 97.8 0.0002 4.3E-09 64.4 10.5 157 97-256 164-379 (591)
360 cd01856 YlqF YlqF. Proteins o 97.8 4.9E-05 1.1E-09 62.1 5.6 89 165-265 13-101 (171)
361 KOG0448 Mitofusin 1 GTPase, in 97.7 0.00036 7.9E-09 67.1 11.8 113 98-215 107-273 (749)
362 TIGR00064 ftsY signal recognit 97.7 9.5E-05 2.1E-09 65.1 7.4 94 148-257 155-260 (272)
363 PRK12288 GTPase RsgA; Reviewed 97.7 4.7E-05 1E-09 69.3 5.3 57 103-162 208-271 (347)
364 PRK12289 GTPase RsgA; Reviewed 97.7 6.8E-05 1.5E-09 68.3 6.0 56 103-161 175-237 (352)
365 PF03193 DUF258: Protein of un 97.7 4.1E-05 8.8E-10 61.8 3.8 58 102-162 37-101 (161)
366 TIGR03596 GTPase_YlqF ribosome 97.7 0.0002 4.2E-09 63.3 8.5 90 165-266 15-104 (276)
367 KOG0467 Translation elongation 97.7 0.00016 3.5E-09 70.1 8.2 108 100-214 9-135 (887)
368 PRK01889 GTPase RsgA; Reviewed 97.6 0.00033 7.2E-09 64.1 9.6 84 169-261 110-193 (356)
369 TIGR00157 ribosome small subun 97.6 0.0001 2.2E-09 64.0 5.9 57 102-162 122-185 (245)
370 cd03110 Fer4_NifH_child This p 97.6 0.0017 3.7E-08 53.2 12.2 86 146-244 91-176 (179)
371 PRK10416 signal recognition pa 97.6 0.00082 1.8E-08 60.5 10.9 93 147-256 196-301 (318)
372 COG5192 BMS1 GTP-binding prote 97.6 0.00057 1.2E-08 64.5 10.0 139 98-250 67-211 (1077)
373 TIGR01425 SRP54_euk signal rec 97.6 0.00066 1.4E-08 63.2 10.4 141 100-256 100-281 (429)
374 KOG0466 Translation initiation 97.5 6.4E-05 1.4E-09 65.8 3.1 168 98-269 36-245 (466)
375 PRK09563 rbgA GTPase YlqF; Rev 97.5 0.00045 9.7E-09 61.4 8.5 89 165-265 18-106 (287)
376 PRK13796 GTPase YqeH; Provisio 97.5 0.00019 4.1E-09 65.9 5.8 55 101-160 161-222 (365)
377 COG1618 Predicted nucleotide k 97.5 0.0038 8.3E-08 50.1 12.3 55 100-156 5-59 (179)
378 TIGR03597 GTPase_YqeH ribosome 97.5 0.00016 3.5E-09 66.2 5.2 56 101-161 155-217 (360)
379 KOG3929 Uncharacterized conser 97.5 4.4E-05 9.5E-10 65.3 1.3 183 98-282 43-269 (363)
380 PRK14722 flhF flagellar biosyn 97.5 0.00072 1.6E-08 62.0 9.3 144 101-255 138-322 (374)
381 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00017 3.8E-09 64.0 4.8 59 101-162 162-227 (287)
382 KOG0460 Mitochondrial translat 97.4 0.001 2.3E-08 59.2 9.3 149 97-250 51-223 (449)
383 COG1162 Predicted GTPases [Gen 97.4 0.0016 3.5E-08 57.5 10.3 94 162-262 70-164 (301)
384 PRK12727 flagellar biosynthesi 97.4 0.0017 3.8E-08 61.8 11.0 135 101-253 351-523 (559)
385 PRK14974 cell division protein 97.4 0.0011 2.3E-08 60.1 9.2 93 148-257 223-322 (336)
386 COG1126 GlnQ ABC-type polar am 97.4 0.00019 4E-09 60.2 3.8 39 229-267 146-186 (240)
387 cd03112 CobW_like The function 97.4 0.0012 2.5E-08 53.4 8.3 21 103-123 3-23 (158)
388 PRK14721 flhF flagellar biosyn 97.3 0.0014 3.1E-08 61.0 9.3 150 101-266 192-383 (420)
389 PF09547 Spore_IV_A: Stage IV 97.3 0.017 3.6E-07 53.4 15.7 159 100-268 17-237 (492)
390 COG1419 FlhF Flagellar GTP-bin 97.3 0.0018 3.9E-08 59.4 9.5 150 100-267 203-396 (407)
391 KOG1424 Predicted GTP-binding 97.3 0.00034 7.4E-09 65.3 4.8 57 100-159 314-370 (562)
392 PRK00098 GTPase RsgA; Reviewed 97.3 0.00038 8.3E-09 62.1 5.0 57 102-161 166-229 (298)
393 COG1162 Predicted GTPases [Gen 97.2 0.00047 1E-08 60.9 5.2 58 102-162 166-230 (301)
394 cd02038 FleN-like FleN is a me 97.2 0.0016 3.4E-08 51.3 7.5 104 105-214 5-108 (139)
395 PRK13695 putative NTPase; Prov 97.2 0.0085 1.8E-07 48.9 12.1 22 101-122 1-22 (174)
396 KOG0099 G protein subunit Galp 97.2 0.0058 1.2E-07 52.7 10.7 37 147-183 201-237 (379)
397 PRK00771 signal recognition pa 97.2 0.00066 1.4E-08 63.6 5.5 91 149-256 177-274 (437)
398 PF00503 G-alpha: G-protein al 97.1 0.0031 6.8E-08 58.4 9.9 117 148-264 236-389 (389)
399 cd03115 SRP The signal recogni 97.1 0.0013 2.7E-08 53.7 6.5 83 148-244 83-171 (173)
400 PRK11889 flhF flagellar biosyn 97.1 0.0019 4.1E-08 59.5 8.0 139 101-255 242-418 (436)
401 PRK12726 flagellar biosynthesi 97.1 0.0016 3.5E-08 59.6 7.1 92 148-255 286-383 (407)
402 cd02042 ParA ParA and ParB of 97.0 0.0023 5E-08 47.4 6.5 82 103-195 2-84 (104)
403 PRK05703 flhF flagellar biosyn 97.0 0.0085 1.8E-07 56.2 11.6 103 148-266 300-414 (424)
404 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0033 7.2E-08 41.3 6.0 44 171-214 13-58 (58)
405 PRK14723 flhF flagellar biosyn 97.0 0.0037 8.1E-08 62.1 8.8 151 102-266 187-380 (767)
406 PF00448 SRP54: SRP54-type pro 96.9 0.0031 6.6E-08 52.8 6.8 92 148-256 84-182 (196)
407 PRK06995 flhF flagellar biosyn 96.9 0.0037 8.1E-08 59.2 8.0 103 149-267 336-449 (484)
408 cd03111 CpaE_like This protein 96.9 0.0035 7.6E-08 47.0 6.4 101 103-212 2-106 (106)
409 KOG0469 Elongation factor 2 [T 96.9 0.0027 5.9E-08 59.3 6.7 111 101-214 20-161 (842)
410 COG3640 CooC CO dehydrogenase 96.8 0.0093 2E-07 50.8 8.9 60 150-214 136-196 (255)
411 KOG0463 GTP-binding protein GP 96.8 0.0072 1.6E-07 54.7 8.5 31 93-123 126-156 (641)
412 PF03266 NTPase_1: NTPase; In 96.8 0.0019 4.1E-08 52.7 4.4 52 102-155 1-52 (168)
413 cd03114 ArgK-like The function 96.7 0.0051 1.1E-07 49.1 6.7 58 147-214 91-148 (148)
414 KOG3859 Septins (P-loop GTPase 96.7 0.003 6.4E-08 54.9 5.4 60 99-158 41-105 (406)
415 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0067 1.4E-07 49.9 7.3 87 102-198 27-118 (177)
416 TIGR00959 ffh signal recogniti 96.7 0.012 2.5E-07 55.2 9.6 93 148-256 183-281 (428)
417 KOG0447 Dynamin-like GTP bindi 96.7 0.013 2.7E-07 55.6 9.5 64 150-216 414-492 (980)
418 KOG0085 G protein subunit Galp 96.7 0.0019 4.1E-08 54.7 3.8 66 203-268 266-352 (359)
419 KOG0464 Elongation factor G [T 96.6 0.0033 7.1E-08 57.5 5.2 111 101-215 38-166 (753)
420 PRK12724 flagellar biosynthesi 96.6 0.011 2.3E-07 55.1 8.4 137 101-253 224-398 (432)
421 cd02036 MinD Bacterial cell di 96.6 0.018 3.8E-07 46.8 9.0 84 149-243 64-147 (179)
422 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.014 3.1E-07 41.8 7.6 68 103-183 2-70 (99)
423 PRK12723 flagellar biosynthesi 96.5 0.027 5.8E-07 52.1 10.6 94 147-256 254-355 (388)
424 KOG0057 Mitochondrial Fe/S clu 96.5 0.0041 8.9E-08 58.8 5.2 54 161-216 495-549 (591)
425 PRK06731 flhF flagellar biosyn 96.5 0.017 3.7E-07 50.8 8.6 138 101-255 76-252 (270)
426 PF13207 AAA_17: AAA domain; P 96.4 0.0028 6.2E-08 48.2 3.0 22 102-123 1-22 (121)
427 PRK08118 topology modulation p 96.4 0.0029 6.3E-08 51.5 3.1 22 102-123 3-24 (167)
428 PRK10867 signal recognition pa 96.4 0.036 7.8E-07 52.0 10.7 92 148-256 184-282 (433)
429 PRK08099 bifunctional DNA-bind 96.4 0.0075 1.6E-07 56.1 6.1 24 100-123 219-242 (399)
430 KOG2485 Conserved ATP/GTP bind 96.3 0.0074 1.6E-07 53.3 5.4 60 98-159 141-207 (335)
431 PRK11537 putative GTP-binding 96.3 0.061 1.3E-06 48.5 11.5 21 103-123 7-27 (318)
432 cd02117 NifH_like This family 96.3 0.091 2E-06 44.3 12.0 88 147-244 116-207 (212)
433 COG3523 IcmF Type VI protein s 96.3 0.011 2.5E-07 61.2 7.4 109 103-215 128-268 (1188)
434 COG0563 Adk Adenylate kinase a 96.3 0.0033 7.1E-08 51.8 3.0 23 101-123 1-23 (178)
435 PF11111 CENP-M: Centromere pr 96.2 0.14 3.1E-06 41.6 12.1 141 97-264 12-152 (176)
436 PRK07261 topology modulation p 96.2 0.004 8.6E-08 50.9 3.1 22 101-122 1-22 (171)
437 PF13521 AAA_28: AAA domain; P 96.1 0.0031 6.7E-08 50.9 2.1 22 102-123 1-22 (163)
438 COG4598 HisP ABC-type histidin 96.1 0.031 6.7E-07 45.9 7.7 39 229-267 162-202 (256)
439 KOG2484 GTPase [General functi 96.1 0.005 1.1E-07 56.0 3.4 57 98-159 250-308 (435)
440 PF13671 AAA_33: AAA domain; P 96.1 0.0044 9.6E-08 48.5 2.8 20 103-122 2-21 (143)
441 cd00009 AAA The AAA+ (ATPases 96.1 0.022 4.8E-07 43.8 6.7 23 102-124 21-43 (151)
442 COG1116 TauB ABC-type nitrate/ 96.0 0.005 1.1E-07 52.8 2.9 22 103-124 32-53 (248)
443 COG0523 Putative GTPases (G3E 95.9 0.16 3.5E-06 45.8 12.2 75 171-257 116-193 (323)
444 KOG0066 eIF2-interacting prote 95.9 0.072 1.6E-06 49.5 9.8 102 100-202 613-752 (807)
445 PF00005 ABC_tran: ABC transpo 95.9 0.007 1.5E-07 47.0 3.0 23 102-124 13-35 (137)
446 COG3839 MalK ABC-type sugar tr 95.8 0.011 2.4E-07 53.4 4.3 36 103-148 32-67 (338)
447 PF13555 AAA_29: P-loop contai 95.8 0.01 2.2E-07 39.9 3.0 19 103-121 26-44 (62)
448 cd02019 NK Nucleoside/nucleoti 95.8 0.0095 2.1E-07 40.9 2.9 21 103-123 2-22 (69)
449 COG4615 PvdE ABC-type sideroph 95.8 0.019 4E-07 52.7 5.4 129 103-248 352-508 (546)
450 smart00382 AAA ATPases associa 95.7 0.0098 2.1E-07 45.3 3.2 26 101-126 3-28 (148)
451 PF00004 AAA: ATPase family as 95.7 0.0095 2E-07 45.6 2.9 21 103-123 1-21 (132)
452 PRK06217 hypothetical protein; 95.6 0.011 2.4E-07 48.7 3.2 23 101-123 2-24 (183)
453 PF07728 AAA_5: AAA domain (dy 95.5 0.01 2.2E-07 46.4 2.7 20 103-122 2-21 (139)
454 COG1136 SalX ABC-type antimicr 95.5 0.011 2.5E-07 50.3 3.0 22 102-123 33-54 (226)
455 COG0552 FtsY Signal recognitio 95.5 0.059 1.3E-06 48.3 7.5 140 100-256 139-326 (340)
456 PRK14738 gmk guanylate kinase; 95.5 0.023 4.9E-07 47.9 4.7 25 100-124 13-37 (206)
457 cd02037 MRP-like MRP (Multiple 95.4 0.074 1.6E-06 43.1 7.6 91 147-243 67-162 (169)
458 PRK14737 gmk guanylate kinase; 95.4 0.016 3.6E-07 48.0 3.6 23 102-124 6-28 (186)
459 cd00071 GMPK Guanosine monopho 95.4 0.014 2.9E-07 45.9 3.0 21 103-123 2-22 (137)
460 COG1120 FepC ABC-type cobalami 95.4 0.013 2.8E-07 51.0 2.9 20 103-122 31-50 (258)
461 PF13238 AAA_18: AAA domain; P 95.4 0.013 2.8E-07 44.6 2.7 21 103-123 1-21 (129)
462 PRK10078 ribose 1,5-bisphospho 95.4 0.014 3E-07 48.3 3.0 22 102-123 4-25 (186)
463 PRK03839 putative kinase; Prov 95.3 0.014 3.1E-07 47.8 3.0 22 102-123 2-23 (180)
464 TIGR02322 phosphon_PhnN phosph 95.3 0.015 3.2E-07 47.6 2.9 22 102-123 3-24 (179)
465 PRK01889 GTPase RsgA; Reviewed 95.3 0.018 4E-07 52.7 3.8 24 101-124 196-219 (356)
466 TIGR03263 guanyl_kin guanylate 95.3 0.015 3.3E-07 47.5 3.0 23 102-124 3-25 (180)
467 PF03205 MobB: Molybdopterin g 95.2 0.016 3.4E-07 45.8 2.8 22 102-123 2-23 (140)
468 PRK14530 adenylate kinase; Pro 95.2 0.017 3.7E-07 48.9 3.1 22 101-122 4-25 (215)
469 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.15 3.2E-06 40.3 8.3 23 102-124 28-50 (144)
470 cd00820 PEPCK_HprK Phosphoenol 95.1 0.018 3.9E-07 43.2 2.8 20 102-121 17-36 (107)
471 COG4525 TauB ABC-type taurine 95.1 0.017 3.7E-07 48.0 2.8 21 102-122 33-53 (259)
472 PRK13949 shikimate kinase; Pro 95.1 0.019 4.2E-07 46.8 3.1 21 102-122 3-23 (169)
473 PF13191 AAA_16: AAA ATPase do 95.1 0.016 3.5E-07 47.2 2.6 22 101-122 25-46 (185)
474 PF13401 AAA_22: AAA domain; P 95.1 0.018 3.8E-07 44.3 2.7 22 103-124 7-28 (131)
475 PRK14532 adenylate kinase; Pro 95.1 0.019 4.2E-07 47.3 3.0 22 101-122 1-22 (188)
476 PF07015 VirC1: VirC1 protein; 95.0 0.18 4E-06 43.0 8.9 101 148-258 84-187 (231)
477 cd03238 ABC_UvrA The excision 95.0 0.021 4.5E-07 47.0 3.1 20 102-121 23-42 (176)
478 KOG2423 Nucleolar GTPase [Gene 95.0 0.011 2.3E-07 54.0 1.5 59 96-157 303-361 (572)
479 PF02263 GBP: Guanylate-bindin 95.0 0.028 6.1E-07 49.2 4.1 59 101-160 22-86 (260)
480 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.0 0.021 4.5E-07 48.3 3.2 23 102-124 32-54 (218)
481 cd04178 Nucleostemin_like Nucl 95.0 0.08 1.7E-06 43.3 6.4 42 173-215 1-42 (172)
482 TIGR00960 3a0501s02 Type II (G 95.0 0.022 4.8E-07 48.1 3.2 23 102-124 31-53 (216)
483 TIGR01360 aden_kin_iso1 adenyl 94.9 0.021 4.6E-07 46.8 2.9 21 102-122 5-25 (188)
484 KOG0459 Polypeptide release fa 94.9 0.12 2.6E-06 47.5 7.8 161 98-258 77-279 (501)
485 PF05729 NACHT: NACHT domain 94.9 0.021 4.6E-07 45.4 2.9 21 103-123 3-23 (166)
486 cd02023 UMPK Uridine monophosp 94.9 0.022 4.8E-07 47.4 2.9 21 103-123 2-22 (198)
487 PRK02496 adk adenylate kinase; 94.9 0.026 5.6E-07 46.4 3.3 22 101-122 2-23 (184)
488 COG1117 PstB ABC-type phosphat 94.9 0.02 4.3E-07 48.3 2.5 19 103-121 36-54 (253)
489 cd03225 ABC_cobalt_CbiO_domain 94.9 0.025 5.4E-07 47.6 3.2 23 102-124 29-51 (211)
490 TIGR00235 udk uridine kinase. 94.9 0.022 4.8E-07 47.9 2.9 24 100-123 6-29 (207)
491 COG3638 ABC-type phosphate/pho 94.8 0.023 4.9E-07 48.5 2.9 20 103-122 33-52 (258)
492 TIGR01166 cbiO cobalt transpor 94.8 0.023 5E-07 47.0 2.9 23 102-124 20-42 (190)
493 cd03226 ABC_cobalt_CbiO_domain 94.8 0.025 5.4E-07 47.4 3.2 23 102-124 28-50 (205)
494 COG1161 Predicted GTPases [Gen 94.8 0.038 8.2E-07 49.9 4.5 92 156-258 18-110 (322)
495 PF13173 AAA_14: AAA domain 94.8 0.022 4.8E-07 44.0 2.6 24 102-125 4-27 (128)
496 PRK08233 hypothetical protein; 94.8 0.024 5.2E-07 46.2 2.9 23 101-123 4-26 (182)
497 cd03261 ABC_Org_Solvent_Resist 94.8 0.025 5.4E-07 48.5 3.2 23 102-124 28-50 (235)
498 cd03264 ABC_drug_resistance_li 94.8 0.023 5E-07 47.8 2.9 23 102-124 27-49 (211)
499 PRK13541 cytochrome c biogenes 94.8 0.026 5.7E-07 46.9 3.2 23 102-124 28-50 (195)
500 cd03269 ABC_putative_ATPase Th 94.8 0.026 5.7E-07 47.4 3.2 23 102-124 28-50 (210)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-42 Score=279.79 Aligned_cols=167 Identities=23% Similarity=0.436 Sum_probs=153.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
-.+.+||+|+|+.|||||||+.||.++.|. .+..|+|+|+..+++.++|+.+.++||||+|||+|+++..+||++|+++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 356899999999999999999999999999 5666999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v 253 (284)
|+|||+|+.+||+++..|+++++++....++ +|||||+|| . +...+..++++.|+..++++ |+||||+++.||
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl----~-~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL----T-EKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc----H-hheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 9999999999999999999999999887755 899999996 2 22344588999999999999 999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023316 254 NKIFKFIMAKLFNLP 268 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~ 268 (284)
+++|..++..+....
T Consensus 161 e~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-41 Score=270.14 Aligned_cols=167 Identities=29% Similarity=0.455 Sum_probs=153.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+|+|+.+||||||+.||+.++|.. ..+|+|..|..+++.+++..++|+||||+|||+|+++.++||++|+++|+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv 83 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV 83 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence 47999999999999999999999999995 57799999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||+++.+||..++.|+++|++..+....| |||||+||. +.+.+..+++..+|++.|+.|+|+||+++.||+++
T Consensus 84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~-----~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLL-----ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhh-----hcccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 999999999999999999999988765665 999999972 23445589999999999999999999999999999
Q ss_pred HHHHHHHHhCCccc
Q 023316 257 FKFIMAKLFNLPWT 270 (284)
Q Consensus 257 f~~l~~~i~~~~~~ 270 (284)
|..|.+.+.....+
T Consensus 159 f~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 159 FQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHhccCcccc
Confidence 99999999877544
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-40 Score=270.41 Aligned_cols=170 Identities=22% Similarity=0.393 Sum_probs=155.9
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (284)
Q Consensus 96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ 174 (284)
.....+||+++|+++||||+|+.+|..+.|. ....|+|+||..+++.++|..+.+++|||+|||+|+.+...||+.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 3456899999999999999999999999999 556699999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
+++|||+++..||+++..|+..+.++.+..++ +|||||+|+. +.+.+..+.++++|.++|++|+|+||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~-----~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLE-----EKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccc-----ccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 99999999999999999999999999887777 7999999962 23445589999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccc
Q 023316 254 NKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~~~ 270 (284)
+++|..+++.+.++...
T Consensus 163 ~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 163 EEAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHHhhcch
Confidence 99999999999865433
No 4
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=100.00 E-value=3.4e-40 Score=255.30 Aligned_cols=192 Identities=61% Similarity=1.020 Sum_probs=184.8
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC
Q 023316 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 171 (284)
Q Consensus 93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ 171 (284)
.+.++...+||.++||+.+|||||+-+|+++++. ....+.|+++..+++.+.|..+.+.+||.+|++++..+.+..+++
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 3446788999999999999999999999999997 555699999999999999999999999999999999999999999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 251 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~ 251 (284)
+.+++++||.+.+++++++..||.+.+..+..++||+||+|.|++-++|.+.|+.+..+++.+|+.++++.+++|+..+.
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCccccccccCCCCCCCCC
Q 023316 252 NVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 284 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~ 284 (284)
||.++|+.+...+++.+|+++++++.|+||+||
T Consensus 173 Nv~KIFK~vlAklFnL~~ti~~~~~iGdPildy 205 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLPWTIPEILTIGDPILDY 205 (205)
T ss_pred cHHHHHHHHHHHHhCCceecccccccCcccccC
Confidence 999999999999999999999999999999997
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-39 Score=260.55 Aligned_cols=166 Identities=23% Similarity=0.457 Sum_probs=150.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|+.+||||||++||+.+.|...| +|+|+||..+++.+.|..+.|++|||+|||+|+.+.+.|++++.++|
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 44599999999999999999999999999554 59999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCC-ce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++|..||++..+|++.++..+... +. +|||||.|| .++ +.+..++++..|+++++.|+++||+.|.||+
T Consensus 100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL----~dk-rqvs~eEg~~kAkel~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL----SDK-RQVSIEEGERKAKELNAEFIETSAKAGENVK 174 (221)
T ss_pred EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc----cch-hhhhHHHHHHHHHHhCcEEEEecccCCCCHH
Confidence 9999999999999999999999887653 55 599999996 333 3345788889999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|..|...+....
T Consensus 175 ~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 175 QLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHhccCcc
Confidence 99999888887664
No 6
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=252.57 Aligned_cols=176 Identities=25% Similarity=0.436 Sum_probs=156.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||++||+.|||||||+.+|+.+.|....+ |+|+||..+.+.++|.++++.||||+|||+|+.+.+.||++|.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 457999999999999999999999999996666 7999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCC--ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTA--IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~--~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++.+++|..+..|++++..|+.+. +.++||||+|. +..+.+..+++..||+++++.|+|+||++.+||.
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-----es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-----ESERVVDREEGLKFARKHRCLFIECSAKTRENVQ 163 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-----hhcccccHHHHHHHHHhhCcEEEEcchhhhccHH
Confidence 9999999999999999999999996543 33699999993 2234455899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcccccc-ccCCC
Q 023316 255 KIFKFIMAKLFNLPWTVKR-NLTIG 278 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~~~~-~~~~~ 278 (284)
..|+.++..|++.|.--+. |...+
T Consensus 164 ~~FeelveKIi~tp~l~~~~n~~~~ 188 (209)
T KOG0080|consen 164 CCFEELVEKIIETPSLWEEGNSSAG 188 (209)
T ss_pred HHHHHHHHHHhcCcchhhccCCccc
Confidence 9999999999998855443 44333
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.4e-40 Score=260.66 Aligned_cols=166 Identities=20% Similarity=0.373 Sum_probs=152.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+|++++|+.|||||+|+.+|+.+.|...+ .|+|+++..+.+.++++.+++++|||+|||.|+++.+.||+++.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35799999999999999999999999999444 59999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||+++++||..+..|+..++++. ++..++|+|||+|| +.++.+..+++++||+++|..|+|+||++++||+|
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL-----~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL-----EARREVSKEEGEAFAREHGLIFMETSAKTAENVEE 158 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh-----hccccccHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence 9999999999999999999999996 44455799999997 33445569999999999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|......|+.+.
T Consensus 159 aF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 159 AFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998664
No 8
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=5.5e-39 Score=255.52 Aligned_cols=168 Identities=21% Similarity=0.364 Sum_probs=151.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|++++|. .+..|+|.+|..+.+.+++..+.++||||+|||+|.++.-.||+++|++++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 4699999999999999999999999999 555699999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK-ATLFFSSATHN 250 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~-~~~~~~Sa~~~ 250 (284)
|||++++.||+++..|.+++..+.. ..-| ||+|||+|+ +... +.+..+.++.||+..| ++|||+|||..
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~----~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV----DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC----CCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 9999999999999999999987743 4455 899999994 4433 4455899999999885 79999999999
Q ss_pred cCHHHHHHHHHHHHhCCccc
Q 023316 251 INVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~~~ 270 (284)
.||.++|..+++.++..+..
T Consensus 164 ~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ccHHHHHHHHHHHHHhccch
Confidence 99999999999999887753
No 9
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.8e-40 Score=252.03 Aligned_cols=164 Identities=25% Similarity=0.485 Sum_probs=152.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+|.+++|++|||||||+.+|..+.|. ++..|+|.|+..+++.++|..+.++||||+|+|+|+.+...||+..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 578899999999999999999999999 5555999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
||+++.+||.++.+|+++++.+++.-+-||||||.|+ ++++.+..++++.||..+|+.+||+||+.++|++.+|.
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~-----~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ 162 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD-----PERRVVDTEDARAFALQMGIELFETSAKENENVEAMFH 162 (198)
T ss_pred EECcchhhhHhHHHHHHHHHhcCccccceecccCCCC-----ccceeeehHHHHHHHHhcCchheehhhhhcccchHHHH
Confidence 9999999999999999999999886666999999995 34455569999999999999999999999999999999
Q ss_pred HHHHHHhCCc
Q 023316 259 FIMAKLFNLP 268 (284)
Q Consensus 259 ~l~~~i~~~~ 268 (284)
.|.+..++..
T Consensus 163 cit~qvl~~k 172 (198)
T KOG0079|consen 163 CITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHH
Confidence 9999887665
No 10
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.2e-37 Score=258.60 Aligned_cols=181 Identities=58% Similarity=0.967 Sum_probs=162.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|+.|||||||+++|++++|. .+.+|+|.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999998 56679999998889999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~ 259 (284)
|+++++||+++..|++.+.+.....+||+||||+||....+...++...++++.+++.++++++++||++|.||+++|++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988766667789999999854333333334467788899999999999999999999999999
Q ss_pred HHHHHhCCccccccccCCCCCC
Q 023316 260 IMAKLFNLPWTVKRNLTIGEPI 281 (284)
Q Consensus 260 l~~~i~~~~~~~~~~~~~~~~~ 281 (284)
+++.+++.+-....-...||||
T Consensus 161 l~~~l~~~~~~~~~~~~~~~~~ 182 (182)
T cd04128 161 VLAKAFDLPLTIPEILTVGEPI 182 (182)
T ss_pred HHHHHHhcCCChhhhcCCCCCC
Confidence 9999999998888889999986
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-38 Score=254.69 Aligned_cols=169 Identities=25% Similarity=0.433 Sum_probs=156.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
-...+||+++|+++||||-|+.||..++|. +..+|+|+++..+++.++++.+..+||||+|||+|+.+...||++|.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 356899999999999999999999999999 8888999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
++|||++.+.||+++..|+.+|+.+....++ +|||||+||. ..+.+..++++.+|+..+..|+|+||.++.||+
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~-----~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLN-----HLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhh-----hccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 9999999999999999999999999876666 6999999972 234455899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccc
Q 023316 255 KIFKFIMAKLFNLPWT 270 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~ 270 (284)
++|..++..|++...+
T Consensus 166 ~aF~~~l~~I~~~vs~ 181 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVSK 181 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999876543
No 12
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-37 Score=236.50 Aligned_cols=164 Identities=25% Similarity=0.478 Sum_probs=150.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
.-.|+.++|+..||||||+.++.++.|. ..+.|.|++|..+++.-..+++.+++|||+|||+|+.+...||++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 3569999999999999999999999999 777899999999999888899999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccc-hHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWT-IATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||++|.+||..++.|.-.|+.++-...+ |+||||||+ +.+++ ..+.++.+++++|..|||+||+.|.||++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm------d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM------DSERVISHERGRQLADQLGFEFFETSAKENINVKQ 173 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC------ccceeeeHHHHHHHHHHhChHHhhhcccccccHHH
Confidence 99999999999999999999998765555 799999996 33444 48999999999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|+.++..|.++.
T Consensus 174 ~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 174 VFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 13
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.1e-36 Score=249.99 Aligned_cols=165 Identities=23% Similarity=0.385 Sum_probs=147.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|+.|||||||+.+|..+.+... .++.+.++..+.+.+++..+.+++|||+|+++|..+++.|++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 469999999999999999999999988844 4588899988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|||+++++||+++..|++++.++.+..|+||||||+||. .. ..+..++++.+++.++++|+||||++|.||+++|
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~----~~-~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA----FK-RQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch----hc-cCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999998887766668999999962 22 2344778999999999999999999999999999
Q ss_pred HHHHHHHhCCc
Q 023316 258 KFIMAKLFNLP 268 (284)
Q Consensus 258 ~~l~~~i~~~~ 268 (284)
+++++.+....
T Consensus 160 ~~l~~~i~~~~ 170 (189)
T cd04121 160 TELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHhc
Confidence 99999887543
No 14
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.9e-37 Score=240.95 Aligned_cols=168 Identities=21% Similarity=0.393 Sum_probs=151.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+++++|||.-||||||+..|..++|. -..||.|+||..+.+.+ +|..+++++|||+|||+|+++.+.||+++.++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35789999999999999999999999998 56789999999998877 68999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC--CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 252 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~ 252 (284)
++|||++|++||+.+..|+.+...+. +..++ .|||+|+|| . ..+.+..++++.+|+.+|+.|+||||++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL----~-SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL----Q-SQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch----h-hhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 99999999999999999999987774 45555 599999997 2 2234459999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccc
Q 023316 253 VNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 253 v~~lf~~l~~~i~~~~~~ 270 (284)
|++.|..+++.+++...+
T Consensus 161 VeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999877554
No 15
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-35 Score=250.42 Aligned_cols=169 Identities=23% Similarity=0.427 Sum_probs=145.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+.|+++|+.|||||||+++|..+.|.. ..+|+|.++..+.+.+++..+.+++|||+|+++|..++..||+++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 469999999999999999999999984 4568899999899999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~~lf 257 (284)
|+++++||+++..|++.+.+.....+| ||||||+||. . ...+..+++.++++++ ++.|++|||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~----~-~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE----T-DREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999877654455 7999999962 2 2334467788899885 7899999999999999999
Q ss_pred HHHHHHHhCC-ccccccc
Q 023316 258 KFIMAKLFNL-PWTVKRN 274 (284)
Q Consensus 258 ~~l~~~i~~~-~~~~~~~ 274 (284)
++++..+.+. +..+..|
T Consensus 156 ~~l~~~~~~~~~~~~~~~ 173 (202)
T cd04120 156 LKLVDDILKKMPLDILRN 173 (202)
T ss_pred HHHHHHHHHhCccccccc
Confidence 9999988654 3344333
No 16
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-36 Score=235.27 Aligned_cols=171 Identities=22% Similarity=0.329 Sum_probs=154.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+|++++|+.|.|||+|+++|+.++|.+ ...|+|++|.++.+.+.++.++++||||+|||+|++..+.||++|.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 346899999999999999999999999994 4459999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||+++++||+++..|+..++...+..+. |++|||.|| . ..+.+...++..||+++.+.+.|+||++|+||+|
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL----~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL----D-PEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc----C-hhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 999999999999999999999998877766 699999996 2 2244558899999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccccc
Q 023316 256 IFKFIMAKLFNLPWTVKR 273 (284)
Q Consensus 256 lf~~l~~~i~~~~~~~~~ 273 (284)
.|...++.|+++...-|.
T Consensus 162 aFl~c~~tIl~kIE~GEl 179 (214)
T KOG0086|consen 162 AFLKCARTILNKIESGEL 179 (214)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 999999999877554443
No 17
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-36 Score=234.29 Aligned_cols=165 Identities=23% Similarity=0.413 Sum_probs=150.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|..|||||+|+++|..+-|. ..-.|+|++|+.+++.++|.++++++|||+|||+|+++...||+.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 4689999999999999999999999998 666799999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++...||+-+.+|+.+|.++..+.+. |+||||+|+ .+++.+..+.+++|++....-|.|+||+.-+||+.+
T Consensus 86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-----~drrevp~qigeefs~~qdmyfletsakea~nve~l 160 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-----ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKL 160 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-----hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHH
Confidence 99999999999999999999999887777 999999996 233444578889999987778889999999999999
Q ss_pred HHHHHHHHhCCc
Q 023316 257 FKFIMAKLFNLP 268 (284)
Q Consensus 257 f~~l~~~i~~~~ 268 (284)
|..++..+....
T Consensus 161 f~~~a~rli~~a 172 (213)
T KOG0095|consen 161 FLDLACRLISEA 172 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999998776544
No 18
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.2e-35 Score=242.56 Aligned_cols=166 Identities=22% Similarity=0.366 Sum_probs=143.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|+++||||||+.+|+.++|. ...+|++.++ .+.+.+++..+.+++|||+|+++|..++..++++++++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 69999999999999999999999998 5556777665 456778999999999999999999999999999999999999
Q ss_pred eCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC-----CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316 180 DLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP-----PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN 252 (284)
Q Consensus 180 d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~ 252 (284)
|+++++||+++ ..|+.++.+..++.|.||||||+||.++.. ...+.+..+++..+++.+++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 689999988776655589999999732210 01123458889999999998 599999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023316 253 VNKIFKFIMAKLFNL 267 (284)
Q Consensus 253 v~~lf~~l~~~i~~~ 267 (284)
|+++|+.+++.+.+.
T Consensus 161 V~~~F~~~~~~~~~~ 175 (176)
T cd04133 161 VKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987654
No 19
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=2.8e-35 Score=244.20 Aligned_cols=168 Identities=27% Similarity=0.341 Sum_probs=144.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+.+.|.. ..||++.++ .+.+.+++..+.+++|||+|+++|..+++.+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 347899999999999999999999999984 456777665 467888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CCcc-cchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PDLQ-WTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~~~-~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||+++++||+++ ..|++++++..+..|.||||||+||.++.. ..++ .+..++++++|+++++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999997 799999998877666689999999743211 0122 3458899999999996 8999999
Q ss_pred CCCcC-HHHHHHHHHHHHhC
Q 023316 248 THNIN-VNKIFKFIMAKLFN 266 (284)
Q Consensus 248 ~~~~~-v~~lf~~l~~~i~~ 266 (284)
++|.| |+++|..+++.+++
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999997654
No 20
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.6e-36 Score=233.05 Aligned_cols=171 Identities=27% Similarity=0.467 Sum_probs=154.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|..-||||||+.+|+.++|. ...+|+...|..+.+.+.+....+.||||+|||+|..+.+.||++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 345799999999999999999999999999 6667888899999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|+|||++|++||+.++.|..++++...+.+- ++||||+|| ++.+.+..++++.+|+..|+.|+++||+.|.||.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-----EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-----EEERQVTRQEAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-----HHhhhhhHHHHHHHHHhhchhheecccccccCHH
Confidence 9999999999999999999999998776666 699999997 3334455899999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccccc
Q 023316 255 KIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~~~ 272 (284)
|+|..+....++.-.+.+
T Consensus 165 elFe~Lt~~MiE~~s~~q 182 (218)
T KOG0088|consen 165 ELFESLTAKMIEHSSQRQ 182 (218)
T ss_pred HHHHHHHHHHHHHhhhcc
Confidence 999999988776554433
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.4e-34 Score=239.30 Aligned_cols=165 Identities=25% Similarity=0.335 Sum_probs=142.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|+++.|. ...+|++.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 379999999999999999999999998 4456777665 46788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CCcc-cchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316 179 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PDLQ-WTIATQARAYAKAMKA-TLFFSSATH 249 (284)
Q Consensus 179 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~~~-~~~~~~~~~~a~~~~~-~~~~~Sa~~ 249 (284)
||+++++||+++ ..|++.++++.+..|.||||||+||.++.. ..++ .+..+++.++|+++++ +|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 799999998887766689999999743211 0112 2447899999999997 799999999
Q ss_pred CcC-HHHHHHHHHHHHh
Q 023316 250 NIN-VNKIFKFIMAKLF 265 (284)
Q Consensus 250 ~~~-v~~lf~~l~~~i~ 265 (284)
|+| |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.3e-34 Score=244.30 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=145.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.|. .+.+|++.++. ..+.+++..+.++||||+|+++|..+.+.||+++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999999999998 55568887764 56788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||+++++||+++ ..|++++.+..+..|+||||||+||..+.. .. ...+..++++++|+++++ .|+||||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999985 799999998876666689999999743211 11 123447899999999999 6999999
Q ss_pred CCCc-CHHHHHHHHHHHHhCC
Q 023316 248 THNI-NVNKIFKFIMAKLFNL 267 (284)
Q Consensus 248 ~~~~-~v~~lf~~l~~~i~~~ 267 (284)
++|. ||+++|..++..+++.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988754
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7.4e-34 Score=237.58 Aligned_cols=167 Identities=20% Similarity=0.280 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|+.|||||||+++|+.+.|. ...+|++.++ .+.+.+++..+.+++|||+|+++|+.+++.|++++|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 589999999999999999999999997 5556777655 45567899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCCC
Q 023316 179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSATH 249 (284)
Q Consensus 179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~ 249 (284)
||+++++||+++. .|+..+.+..++.|.||||||.||.+.... ....+..++++.+++.++ ++|+|+||++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~ 161 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN 161 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 9999999999997 699988877666555899999997432110 001234678999999998 5999999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
|.||+++|+++++.+...
T Consensus 162 g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 162 QDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCHHHHHHHHHHHHhcc
Confidence 999999999999988765
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=1.5e-33 Score=230.02 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=142.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|.++++...+ +|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999999988444 4889998888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||+++++||+.+..|++.+....... |.++||||+|+. .. .....+++.++++..+++++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE----AQ-RDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999987765444 447999999962 22 2234678889999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
.+++..+++
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999988864
No 25
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=8.6e-36 Score=225.46 Aligned_cols=163 Identities=23% Similarity=0.414 Sum_probs=147.4
Q ss_pred EEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 104 ~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
+++|++++|||+|+-+|..+-|- .-++|.|+||..+.+..++.++++++|||+|||+|++....||+++|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37999999999999999998888 4456999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023316 182 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 260 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l 260 (284)
+++-||++++.|+.+|.++....+. .++|||+|+ . ..+.+..++++.+++.+++||+|+||++|-||+-.|..+
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~----a-~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL----A-HERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc----c-hhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 9999999999999999999887777 599999996 1 113344788999999999999999999999999999999
Q ss_pred HHHHhCCcccc
Q 023316 261 MAKLFNLPWTV 271 (284)
Q Consensus 261 ~~~i~~~~~~~ 271 (284)
+..+.+.....
T Consensus 156 a~~l~k~~~~~ 166 (192)
T KOG0083|consen 156 AEELKKLKMGA 166 (192)
T ss_pred HHHHHHhccCC
Confidence 99987765443
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=2.6e-33 Score=238.81 Aligned_cols=168 Identities=23% Similarity=0.342 Sum_probs=143.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+|+|++|||||||+++|..+.|. .+.||++.++. ..+.+++..+.+.+|||+|++.|..+++.+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999999999998 55567776664 6778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC------Ccc-cchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316 179 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP------DLQ-WTIATQARAYAKAMKA-TLFFSSATH 249 (284)
Q Consensus 179 ~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~------~~~-~~~~~~~~~~a~~~~~-~~~~~Sa~~ 249 (284)
||+++++||+++ ..|..++....+..|.||||||+||..+... ... .+..+++..+++++|+ +|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999999 5788888777777777899999998543211 111 2347889999999996 899999999
Q ss_pred CcC-HHHHHHHHHHHHhCCc
Q 023316 250 NIN-VNKIFKFIMAKLFNLP 268 (284)
Q Consensus 250 ~~~-v~~lf~~l~~~i~~~~ 268 (284)
+.| |+++|..++...++..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999999887643
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=3.4e-33 Score=227.11 Aligned_cols=158 Identities=25% Similarity=0.459 Sum_probs=141.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|+++++. ...+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999998 45678899988888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|+++++||+++..|++++........| ++||||.||. + .+.+..+++..+++.++++|+++||++|.||+++|.
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE----Q-KRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654455 7999999962 2 233346789999999999999999999999999999
Q ss_pred HHHHH
Q 023316 259 FIMAK 263 (284)
Q Consensus 259 ~l~~~ 263 (284)
+|++.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99864
No 28
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-34 Score=218.28 Aligned_cols=175 Identities=22% Similarity=0.355 Sum_probs=156.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+|-+++|+-|||||+|+.+|...+|..+ ..|+|++|..+.+.+.|+++++++|||+|||+|+...+.||+++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 468999999999999999999999999944 4499999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++.+.+++.+..|+...+... ++..++++|||.|| +..+.+..+++++|++++|..|.|+||++|+||++.
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-----e~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-----ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-----hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 999999999999999999887763 45555799999997 233445599999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccccccCCC
Q 023316 257 FKFIMAKLFNLPWTVKRNLTIG 278 (284)
Q Consensus 257 f~~l~~~i~~~~~~~~~~~~~~ 278 (284)
|...++.|+++.+.-...++..
T Consensus 165 fle~akkiyqniqdgsldlnaa 186 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGSLDLNAA 186 (215)
T ss_pred HHHHHHHHHHhhhcCcccccch
Confidence 9999999998876665555443
No 29
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.1e-33 Score=234.21 Aligned_cols=169 Identities=20% Similarity=0.346 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|++|||||||+++|+++.+. ...+|++.++..+.+.++ +..+.+++|||+|+++|..+++.++++++++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 59999999999999999999999988 556688999988888888 8899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcC
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNIN 252 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~ 252 (284)
||+++++||+++..|+..+.... ...|.||||||+||. + ......+++.++++..+ .+++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK----K-RLAKDGEQMDQFCKENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc----c-ccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence 99999999999999999887642 233448999999962 1 12334678899999998 6899999999999
Q ss_pred HHHHHHHHHHHHhCCccccccc
Q 023316 253 VNKIFKFIMAKLFNLPWTVKRN 274 (284)
Q Consensus 253 v~~lf~~l~~~i~~~~~~~~~~ 274 (284)
|+++|+++++.+.+.......+
T Consensus 156 v~e~f~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 156 IEEAMRFLVKNILANDKNLQQA 177 (201)
T ss_pred HHHHHHHHHHHHHHhchhhHhh
Confidence 9999999999988765444333
No 30
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.9e-33 Score=228.96 Aligned_cols=163 Identities=18% Similarity=0.272 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|+.+.|. ...||++.++. ..+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999999999997 55567776664 55678899999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCC------CCC-cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316 180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL------PPD-LQWTIATQARAYAKAMK-ATLFFSSATHN 250 (284)
Q Consensus 180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~------~~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~ 250 (284)
|+++++||+++. .|+.++....++.|.||||||+|+..+- ... .+.+..+++++++++.+ +.|+++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999997 6999998876665668999999973220 001 12344778899999887 68999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++|+.++...
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998864
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.9e-33 Score=229.36 Aligned_cols=163 Identities=13% Similarity=0.200 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|.+++|. ...+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999999999998 4455777554 45678899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||+++++||+.+..|+..+.+.. ...|.|+||||+|+. .. +.+..+++..+++.++++|++|||++|.||+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE----SQ-RQVTTEEGRNLAREFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh----hc-CccCHHHHHHHHHHhCCEEEEEecCCCCCHHHH
Confidence 99999999999999988887653 234447999999962 22 234467888999999999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 023316 257 FKFIMAKLFNLP 268 (284)
Q Consensus 257 f~~l~~~i~~~~ 268 (284)
|+++++.+.+..
T Consensus 156 f~~l~~~~~~~~ 167 (172)
T cd04141 156 FHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999999887643
No 32
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=8e-33 Score=236.10 Aligned_cols=163 Identities=23% Similarity=0.317 Sum_probs=143.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+.+++. ...+|+|.++....+..++..+.+.+|||+|+++|..++..|+++++++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55799999999999999999999999998 55668999998888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+|||+++++||+++..|+..+.+.....|++|||||+||.+ ..+..+++ .+++..+++|++|||++|.||+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~------~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN------RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh------ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence 99999999999999999999988776666689999999621 11223344 677888999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|++++..+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999998755
No 33
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.6e-32 Score=223.81 Aligned_cols=161 Identities=24% Similarity=0.490 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|.++++. ...+|+|.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999998 55668888888788888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++|+++..|++.+.+.....+| ++||||+||. +. +....+++.++++.++++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME----DE-RVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999887654444 7999999962 21 22235677888888999999999999999999999
Q ss_pred HHHHHHhC
Q 023316 259 FIMAKLFN 266 (284)
Q Consensus 259 ~l~~~i~~ 266 (284)
+++..+.+
T Consensus 157 ~l~~~~~~ 164 (165)
T cd01865 157 RLVDIICD 164 (165)
T ss_pred HHHHHHHh
Confidence 99987654
No 34
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.6e-32 Score=224.30 Aligned_cols=163 Identities=21% Similarity=0.415 Sum_probs=143.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.+++|. ...+|++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3689999999999999999999999988 556688988888888889988999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++++|+++..|+..+.+.....+| ++||||+|+. +. .....+++..+++..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME----EK-RVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999887654445 8999999963 22 223356788889999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
|+++++.+.+
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 35
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.5e-32 Score=225.43 Aligned_cols=163 Identities=25% Similarity=0.375 Sum_probs=142.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
||+++|++|||||||+++|+++.|. .+.+|++.++..+.+.++|..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999999999998 555788999988888899999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcc-cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
++++++|+.+..|++.+.+. .+..+| |+||||+||. +... ....+++..+++.++++++++||++|.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS----SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC----ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999998665 344455 7999999962 2222 223667788888899999999999999999999
Q ss_pred HHHHHHHhCCc
Q 023316 258 KFIMAKLFNLP 268 (284)
Q Consensus 258 ~~l~~~i~~~~ 268 (284)
+.+++.+.+.+
T Consensus 158 ~~l~~~~~~~~ 168 (170)
T cd04108 158 FRVAALTFELG 168 (170)
T ss_pred HHHHHHHHHcc
Confidence 99999987654
No 36
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1.6e-32 Score=222.63 Aligned_cols=159 Identities=27% Similarity=0.489 Sum_probs=144.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
||+++|+++||||||+++|.++.+. ...+|.|.+...+.+.+++..+.+++||++|+++|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999988 555688899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~ 259 (284)
+++++||+++..|++.+....+..+| +|||||.|+. + .+.+..+++++++++++++|+++||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS----D-EREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG----G-GSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeecccccc----c-cccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999885445 7999999962 2 2334478899999999999999999999999999999
Q ss_pred HHHHHh
Q 023316 260 IMAKLF 265 (284)
Q Consensus 260 l~~~i~ 265 (284)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 37
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.9e-32 Score=226.18 Aligned_cols=163 Identities=26% Similarity=0.434 Sum_probs=140.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC----------CeEEEEEEEeCCCCcCCcccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~l~l~Dt~G~e~~~~~~~~ 167 (284)
..+||+++|++|||||||+++|.++.+. ...+|++.++....+.+. +..+.+++|||+|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999999998 556688988887777664 45789999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 245 (284)
+++++|++|+|||+++++||.++..|+..+.... ...|.++||||+|+. +. .....+++.++++..+++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE----DQ-RQVSEEQAKALADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch----hc-CccCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999998764 233447999999962 21 2233677899999999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhC
Q 023316 246 SATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
||++|.|++++|+++++.+++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 38
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-34 Score=224.02 Aligned_cols=165 Identities=27% Similarity=0.427 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC---------CeEEEEEEEeCCCCcCCccccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPIA 168 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~---------~~~~~l~l~Dt~G~e~~~~~~~~~ 168 (284)
..+|.+.+|++||||||++.+|..++|. .-+.|+|+||..+.+.++ +..+.+++|||+|||+|+++...|
T Consensus 8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF 87 (219)
T KOG0081|consen 8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF 87 (219)
T ss_pred HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence 4679999999999999999999999999 666799999999988773 467999999999999999999999
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
+++|-+++++||+++..||-+++.|+.+++.+. ++.-+|++|||+|| ++.+.+.++++.++|.++|+||||+|
T Consensus 88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL-----~~~R~Vs~~qa~~La~kyglPYfETS 162 (219)
T KOG0081|consen 88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL-----EDQRVVSEDQAAALADKYGLPYFETS 162 (219)
T ss_pred HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch-----hhhhhhhHHHHHHHHHHhCCCeeeec
Confidence 999999999999999999999999999998763 33333799999997 23234448899999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCc
Q 023316 247 ATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~~ 268 (284)
|-+|.||++..+.+...+++..
T Consensus 163 A~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999888888877653
No 39
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.5e-32 Score=221.71 Aligned_cols=161 Identities=24% Similarity=0.373 Sum_probs=140.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++++.+.+. ...+|.+.++....+..++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999998887 55668888888888888888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~ 259 (284)
|+++++||+++..|+..+.....+.|.|+||||+|+. . + .+..+...+++..+++++++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~----~--~-~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK----D--R-KVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc----c--c-cCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999998887666668999999962 1 1 1223345677778899999999999999999999
Q ss_pred HHHHHhCCc
Q 023316 260 IMAKLFNLP 268 (284)
Q Consensus 260 l~~~i~~~~ 268 (284)
+++.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999987643
No 40
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.9e-32 Score=221.48 Aligned_cols=162 Identities=20% Similarity=0.420 Sum_probs=143.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||++++.++.+. ...+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999999999988 5556889899888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||+++++||+++..|+..+.+.... .|.|+|+||+|+. .. .....+++..+++.++++++++||++|+|++++|
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----DK-RVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 9999999999999999999887643 4448999999962 22 2233677888999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
..+++.+.+
T Consensus 157 ~~i~~~~~~ 165 (166)
T cd01869 157 MTMAREIKK 165 (166)
T ss_pred HHHHHHHHh
Confidence 999988753
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.1e-32 Score=223.74 Aligned_cols=162 Identities=23% Similarity=0.357 Sum_probs=136.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+.+|+.+.|.. ..+|++ +.+...+.+++..+.+++|||+|+++|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 799999999999999999999999984 445654 555567778999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316 180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSATHN 250 (284)
Q Consensus 180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~-~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~ 250 (284)
|+++++||+++. .|+..+....++.|.||||||+||.+... . ..+.+..+++.++++.++. +|+|+||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999996 69998887766656689999999732110 0 0122447889999999985 9999999999
Q ss_pred cCHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAK 263 (284)
Q Consensus 251 ~~v~~lf~~l~~~ 263 (284)
+|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 42
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.4e-32 Score=226.41 Aligned_cols=167 Identities=22% Similarity=0.258 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.||+++|++|||||||+++|.++.|.. ..+|.+.++. ..+.+++..+.+++|||+|++.|..+++.+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 389999999999999999999999984 4456666654 56677888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-------cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023316 180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMK-ATLFFSSATHN 250 (284)
Q Consensus 180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~ 250 (284)
|+++++||+++. .|++.+.......|.||||||+||....... .+.+..+++..+++..+ ++|+++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999986 6999998876666668999999974321110 00123567788888877 68999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023316 251 INVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~ 268 (284)
.||+++|.++++.+.+..
T Consensus 160 ~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 160 RGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999887543
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=3.2e-32 Score=231.78 Aligned_cols=163 Identities=26% Similarity=0.402 Sum_probs=142.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|++|||||||+++|.++.|. .+.+|++.+++.+.+.+++ ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 59999999999999999999999998 5566999999888888865 578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC---CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ---TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~---~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
||+++++||+++..|++.+.+... ..+| |+||||+||. + .+.+..+++..+++.++++++++||++|+||+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~----~-~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE----H-NRTVKDDKHARFAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999999988743 3345 6999999962 2 12334677889999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|++++..+....
T Consensus 156 ~lf~~l~~~l~~~~ 169 (215)
T cd04109 156 LLFQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999988653
No 44
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=7.1e-32 Score=219.31 Aligned_cols=159 Identities=26% Similarity=0.452 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|+++++. ...++.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999988 44457787888778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~ 259 (284)
|++++.+|+++..|+..+.+..++.|.|+|+||+|+. . ...++...+++..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~----~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLD----P----SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc----h----hHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999998876666668999999961 1 1234456677788899999999999999999999
Q ss_pred HHHHHhCC
Q 023316 260 IMAKLFNL 267 (284)
Q Consensus 260 l~~~i~~~ 267 (284)
+++.+...
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99888654
No 45
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=5.6e-32 Score=219.37 Aligned_cols=159 Identities=18% Similarity=0.321 Sum_probs=135.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++++.+.+...+. |++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 3799999999999999999999999885444 555 56667788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++++|+++..|++.+.+... +.|.|+|+||+|+. +. +....+++..+++.++++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----DE-RVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999999987632 34447999999962 22 223356677888888899999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|+++++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998765
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=5.2e-32 Score=220.13 Aligned_cols=160 Identities=19% Similarity=0.363 Sum_probs=141.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|+++++. ...+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999999999988 55668899998888999999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQ-----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~-----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
|++++++|+.+..|+.++.++.. ..+| ++|+||+|+. + ......++...+++..+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT----K-HRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999988753 2344 7999999962 1 1223367777888889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 023316 254 NKIFKFIMAKLF 265 (284)
Q Consensus 254 ~~lf~~l~~~i~ 265 (284)
+++|+++++.++
T Consensus 156 ~~l~~~l~~~l~ 167 (168)
T cd04119 156 NEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 47
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.2e-32 Score=226.94 Aligned_cols=163 Identities=23% Similarity=0.448 Sum_probs=145.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|.+.++. ...+|++.++..+.+.+++..+.+.+|||+|++.+..++..++++++++|+|
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 689999999999999999999999988 5567889999888888899889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
||+++++||+++..|++.+.......|.+|||||+|+. +. .....+++..+++.++++++++||++|.||+++|+
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~ 160 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP----ER-KVVETEDAYKFAGQMGISLFETSAKENINVEEMFN 160 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHH
Confidence 99999999999999999998877666668999999962 21 22336778888888999999999999999999999
Q ss_pred HHHHHHhCC
Q 023316 259 FIMAKLFNL 267 (284)
Q Consensus 259 ~l~~~i~~~ 267 (284)
+++..++..
T Consensus 161 ~l~~~~~~~ 169 (199)
T cd04110 161 CITELVLRA 169 (199)
T ss_pred HHHHHHHHh
Confidence 999988754
No 48
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=5.5e-32 Score=227.47 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=136.8
Q ss_pred EcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh
Q 023316 106 LGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (284)
Q Consensus 106 lG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~ 184 (284)
+|++|||||||+++|+.+.+. ...+|+|.++..+.+.+++..+.+.+|||+|+++|..++..||++++++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999999999888 4556889999989899999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 185 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 185 ~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+||+.+..|++++.+.....|.||||||+||.. +.+..+ ...+++..++.|++|||++|.||+++|++++..+
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~------~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD------RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECccccc------ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999998776656689999999731 112233 3467888899999999999999999999999988
Q ss_pred hCC
Q 023316 265 FNL 267 (284)
Q Consensus 265 ~~~ 267 (284)
...
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 765
No 49
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=6.7e-32 Score=226.29 Aligned_cols=162 Identities=20% Similarity=0.331 Sum_probs=129.3
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhcCCC-----C-Ccccccce-eeeeEE--------EEECCeEEEEEEEeCCCCcCCcc
Q 023316 100 SLKISLLGDCQIGKTSFVV-KYVGNEQ-----E-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~-~l~~~~~-----~-~~~~t~~~-~~~~~~--------~~~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
.+||+++|++|||||||+. ++.++.+ . ...||++. +.+... +.++|..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 6665543 3 33457752 333222 25789999999999999986 3
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC--------------CcccchH
Q 023316 164 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP--------------DLQWTIA 228 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~--------------~~~~~~~ 228 (284)
+...+|+++|++|+|||++++.||+++. .|++.+.+..+..|.||||||+||...... ..+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5677899999999999999999999997 699999887765566899999997431100 1234458
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 229 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 229 ~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++++++|++++++|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 89999999999999999999999999999999864
No 50
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=5.1e-32 Score=230.64 Aligned_cols=165 Identities=23% Similarity=0.403 Sum_probs=137.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+++|+.++|....+|++.++....+ ..+.+.+|||+|++.|..++..|++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999999999998667788887765443 45779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC-------------C-CcccchHHHHHHHHHHcC------
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP-------------P-DLQWTIATQARAYAKAMK------ 239 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~-------------~-~~~~~~~~~~~~~a~~~~------ 239 (284)
+++++||+++..|+..+.+.....+| ||||||+||.++.. . ..+.+..+++..+|++++
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 99999999999888888765444444 79999999853110 0 123345889999999876
Q ss_pred --------CcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 240 --------ATLFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 240 --------~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++|+||||++|.||+++|..+++.++....
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998875543
No 51
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=8e-32 Score=218.62 Aligned_cols=154 Identities=22% Similarity=0.357 Sum_probs=128.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+.+|+.+.|...+++++.++ .+.+.++|..+.+++|||+|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 589999999999999999999998886556655555 47788999999999999999985 347789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF 257 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~~lf 257 (284)
+++++||+++..|++++..+.. ..|.++||||+||. ....+.+..+++++++++. ++.|+||||++|.||+++|
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS---ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh---hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 9999999999999999988753 33447999999962 1112334477888999886 5899999999999999999
Q ss_pred HHHHHH
Q 023316 258 KFIMAK 263 (284)
Q Consensus 258 ~~l~~~ 263 (284)
+.+++.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 999865
No 52
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.7e-32 Score=228.47 Aligned_cols=164 Identities=23% Similarity=0.434 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
.+||+++|++|||||||+++|+++.+. ...+|++.++..+.+.+ ++..+.+++|||+|++++..++..+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999988 45578899998888887 5778899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||+++++||+++..|++++.+... ..+| ||||||+|+. + ...+..+++..+++.++++++++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE----S-QRQVTREEAEKLAKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc----c-ccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999987643 4455 7999999963 2 123346778889999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|+++++.+.+..
T Consensus 157 ~f~~l~~~~~~~~ 169 (211)
T cd04111 157 AFELLTQEIYERI 169 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887663
No 53
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-31 Score=223.32 Aligned_cols=163 Identities=20% Similarity=0.415 Sum_probs=143.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|.++.+. .+.+|.+.++..+.+.+++..+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999998 46678898888888889998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|+++++||+++..|+.++.......+| |+||||+|+. +. .....+++..+++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV----NN-KVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc----cc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654455 7999999962 11 22336677888888899999999999999999999
Q ss_pred HHHHHHhCCc
Q 023316 259 FIMAKLFNLP 268 (284)
Q Consensus 259 ~l~~~i~~~~ 268 (284)
++++.+....
T Consensus 156 ~l~~~~~~~~ 165 (188)
T cd04125 156 LLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.2e-31 Score=224.17 Aligned_cols=165 Identities=25% Similarity=0.475 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|++|||||||+++|.++++. ...+|++.++..+.+.+++..+.++||||+|++++..++..+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999999986 3456888888888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||++++++|+++..|+..+.+.....+| ++|+||+|+. .+ +....+++..+++.++++|+++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~~-~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS----GE-RVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch----hc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988765555 6999999962 11 2233567888899999999999999999999999
Q ss_pred HHHHHHHhCCccc
Q 023316 258 KFIMAKLFNLPWT 270 (284)
Q Consensus 258 ~~l~~~i~~~~~~ 270 (284)
.++++.+.+..+.
T Consensus 156 ~~l~~~~~~~~~~ 168 (191)
T cd04112 156 TAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHhccc
Confidence 9999999877544
No 55
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.5e-31 Score=217.66 Aligned_cols=159 Identities=20% Similarity=0.299 Sum_probs=135.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
++||+++|++|||||||+++++.+.+...+ +|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999999998887444 4666544 46778889899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++++|+++..|+..+.... .+.|.++|+||+||. .. .....+++..+++.++++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----DE-RVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----hc-cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 99999999999999999987653 334457999999962 21 222355677888889999999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99998765
No 56
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.1e-31 Score=224.17 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=136.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
||+++|++|||||||+++|+.+.|...+ +|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999999999988444 4666444 4566788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+++++||+++..|++.+.... ...|+|+||||+|+. .. .....+++.++++.++++++++||++|.|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----YE-REVSTEEGAALARRLGCEFIEASAKTNVNVERA 154 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----cc-CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 999999999999999987653 234447999999962 21 223356678888889999999999999999999
Q ss_pred HHHHHHHHhCCccc
Q 023316 257 FKFIMAKLFNLPWT 270 (284)
Q Consensus 257 f~~l~~~i~~~~~~ 270 (284)
|+++++.+.+....
T Consensus 155 ~~~l~~~l~~~~~~ 168 (190)
T cd04144 155 FYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999988655433
No 57
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=1.7e-31 Score=217.39 Aligned_cols=160 Identities=26% Similarity=0.458 Sum_probs=142.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||++++.++++. ...++.+.++..+.+.+++..+.+++||++|++++..++..++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999999999988 6667999999888999999889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||++++++|+++..|+..+.+.....+| ++|+||+|+. .. +....++...+++..+++++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999888765555 6999999962 22 2233667788888889999999999999999999
Q ss_pred HHHHHHH
Q 023316 258 KFIMAKL 264 (284)
Q Consensus 258 ~~l~~~i 264 (284)
++++..+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9999876
No 58
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=1.9e-31 Score=216.61 Aligned_cols=160 Identities=19% Similarity=0.277 Sum_probs=135.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||+++++.+++...+.++..++....+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999855544434666778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|+++++||+++..|+..+.+.. .+.|.++|+||+|+. .. ......++..+++.++++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE----SE-REVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----hc-CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999988763 234447999999962 11 1222456788888888999999999999999999
Q ss_pred HHHHHHH
Q 023316 258 KFIMAKL 264 (284)
Q Consensus 258 ~~l~~~i 264 (284)
.++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998754
No 59
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.1e-31 Score=214.24 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=134.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|+++++...+ +|++.. ..+.+.+++..+.+++|||+|++++..++..|+++++++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 379999999999999999999999987444 455544 456778888888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++.+|+++..|+..+.+... ..|+++|+||+|+. . .....+++..+++..+++++++||++|.|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA----A--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence 999999999999999999887642 34557999999962 1 223366778888888999999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|+++++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 60
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=1.7e-31 Score=216.42 Aligned_cols=158 Identities=21% Similarity=0.406 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
+||+++|++|+|||||+++|+++.+. ...+|++.++..+.+.++ +..+.+++|||+|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999999888 455688989887788777 788999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|||++++++|+.+..|++.+.+...+.|+|+|+||+|+. .+ .....+++..+++.++++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL----DQ-AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999998777666668999999962 11 1223577888999999999999999999999999
Q ss_pred HHHHHH
Q 023316 258 KFIMAK 263 (284)
Q Consensus 258 ~~l~~~ 263 (284)
+++...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 61
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=2.8e-31 Score=226.16 Aligned_cols=164 Identities=26% Similarity=0.442 Sum_probs=146.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+. ...+|+|.++..+.+.+++..+.+++|||+|+++|..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999999987 566799999999999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++++|+++..|+..+.+.....+| |+||||+||. .. .....+++..++..++++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~----~~-~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN----HL-RSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999887654555 7999999962 21 223367788899999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|++++..+.+.
T Consensus 166 f~~l~~~i~~~ 176 (216)
T PLN03110 166 FQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 62
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=2.6e-31 Score=220.89 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=141.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|++|||||||+++|.++.+. ...+|++.++.. .+... +..+.+++|||+|+++|..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 59999999999999999999999988 445577766643 45554 7889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~l 256 (284)
||+++++||+++. .|+..+....++.|+|+||||+||....+.. ..+..+++.++++.+++ +++++||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLD-RKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcccc-CCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999996 6999888776666668999999974322111 22346788899999998 9999999999999999
Q ss_pred HHHHHHHHhCCcccc
Q 023316 257 FKFIMAKLFNLPWTV 271 (284)
Q Consensus 257 f~~l~~~i~~~~~~~ 271 (284)
|..+++.+.......
T Consensus 159 f~~l~~~~~~~~~~~ 173 (187)
T cd04132 159 FDTAIEEALKKEGKA 173 (187)
T ss_pred HHHHHHHHHhhhhhh
Confidence 999999998765443
No 63
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=4.3e-31 Score=217.09 Aligned_cols=162 Identities=25% Similarity=0.360 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||++++.++.|...+.+++.+.....+.+++..+.+++|||+|+++|..+++.+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999988666666677777788889989999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316 181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNI 251 (284)
Q Consensus 181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~ 251 (284)
+++++||+++. .|+..+.+...+.|.++||||+||..... ...+.+..+++..+++..+. +|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999985 79998887655555589999999732110 01223347788999999998 89999999999
Q ss_pred CHHHHHHHHHH
Q 023316 252 NVNKIFKFIMA 262 (284)
Q Consensus 252 ~v~~lf~~l~~ 262 (284)
||+++|+.++.
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998875
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=4.2e-31 Score=216.18 Aligned_cols=162 Identities=22% Similarity=0.384 Sum_probs=142.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||++++.+.++. ...++.|.++..+.+.+++..+.+.+|||+|++++..+...+++.+|++|+|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999888 4456888998888888999899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||+++++||+++..|+.+++++.. ..|.|+|+||.|+.+ . .....++++.+++..+++++++||++++|++++|
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES----R-REVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc----c-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999999988754 444589999999631 1 2233667888888899999999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
.++++.+++
T Consensus 159 ~~~~~~~~~ 167 (168)
T cd01866 159 INTAKEIYE 167 (168)
T ss_pred HHHHHHHHh
Confidence 999988764
No 65
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=5e-31 Score=220.40 Aligned_cols=167 Identities=24% Similarity=0.355 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC--cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|++|||||||+++|+++++.. ..+|++.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 599999999999999999999999873 455888888888899999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
||++++++|+++..|++.+.....+.|.++|+||+|+..... ....+..+++..++..++++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988765556689999999732211 1122235667888888899999999999999999999
Q ss_pred HHHHHHhCCc
Q 023316 259 FIMAKLFNLP 268 (284)
Q Consensus 259 ~l~~~i~~~~ 268 (284)
++++.+.+.+
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 66
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=4.6e-31 Score=216.62 Aligned_cols=163 Identities=22% Similarity=0.354 Sum_probs=137.0
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
|+++|++|||||||+++|.++.+...+ ++.+. .+...+.+++..+.+++|||+|+++|..+++.+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 689999999999999999999988444 45544 4456677889999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316 182 TSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMKA-TLFFSSATHNIN 252 (284)
Q Consensus 182 ~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~ 252 (284)
++++||+++. .|+..+.++.+..|.||||||+|+..+.. .. ...+..+++.++++..++ +++++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999996 69999988777767789999999742111 00 112346778899999996 999999999999
Q ss_pred HHHHHHHHHHHHhC
Q 023316 253 VNKIFKFIMAKLFN 266 (284)
Q Consensus 253 v~~lf~~l~~~i~~ 266 (284)
|+++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988754
No 67
>PTZ00369 Ras-like protein; Provisional
Probab=99.98 E-value=4.9e-31 Score=220.03 Aligned_cols=163 Identities=16% Similarity=0.261 Sum_probs=139.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+... .+|++.++ .+.+.+++..+.+++|||+|+++|..++..|++++|++|+
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 368999999999999999999999998844 45666655 5677889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||++++++|+++..|+..+.+... ..|.|+|+||+|+. +. ..+..+++..+++.++++++++||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~~-~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD----SE-RQVSTGEGQELAKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 9999999999999999999877643 33447999999962 22 22235667788888899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|.++++.+.+.
T Consensus 158 ~~~~l~~~l~~~ 169 (189)
T PTZ00369 158 AFYELVREIRKY 169 (189)
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=5.1e-31 Score=214.74 Aligned_cols=160 Identities=26% Similarity=0.436 Sum_probs=138.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|+|||||++++.++.+. ...++.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999888 444588888888888899988999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~ 255 (284)
|||++++++|+++..|+..+.......+ +|+|+||+|+. .. .....+++..+++..+. .++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE----EQ-REVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 9999999999999999999987654444 47999999963 11 22346678888888886 689999999999999
Q ss_pred HHHHHHHH
Q 023316 256 IFKFIMAK 263 (284)
Q Consensus 256 lf~~l~~~ 263 (284)
+|+++++.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.98 E-value=7e-31 Score=214.86 Aligned_cols=159 Identities=25% Similarity=0.418 Sum_probs=139.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|+++.+. ...++.|.++..+.+.+++..+.+++|||+|++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4699999999999999999999999988 556788988888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNI 251 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~ 251 (284)
|||+++++||+.+..|+.++..... ...| ++||||+|+. ......+++.+++++++. +++++||++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP------ERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc------ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 9999999999999999998876542 2345 7999999962 222346778889988884 89999999999
Q ss_pred CHHHHHHHHHHH
Q 023316 252 NVNKIFKFIMAK 263 (284)
Q Consensus 252 ~v~~lf~~l~~~ 263 (284)
|+.++|+++++.
T Consensus 158 ~v~~~~~~~~~~ 169 (170)
T cd04116 158 NVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 70
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=6.6e-31 Score=213.02 Aligned_cols=159 Identities=25% Similarity=0.395 Sum_probs=139.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|.++++. ...++.+.++....+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999999999987 55668888888888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++|+++..|+..+........| ++|+||+|+. + ......+++..+++..+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA----D-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----h-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999998776544444 7999999962 2 122346778889999999999999999999999999
Q ss_pred HHHHHH
Q 023316 259 FIMAKL 264 (284)
Q Consensus 259 ~l~~~i 264 (284)
++++.+
T Consensus 156 ~~~~~~ 161 (161)
T cd04113 156 KCARSI 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.2e-30 Score=212.86 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|+++.+.. ..+|.+.. +...+..++..+.+++|||+|+++|..++..+++.++++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-YRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 799999999999999999999999874 44555544 3455667778899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|+++++||+++..|++.+.+.. .+.|.++||||+|+. .. .....+++..++..++++++++||++|.|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES----HK-REVSSNEGAACATEWNCAFMETSAKTNHNVQE 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc----cc-CeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence 9999999999999988887653 234557999999962 11 22335677888888899999999999999999
Q ss_pred HHHHHHHH
Q 023316 256 IFKFIMAK 263 (284)
Q Consensus 256 lf~~l~~~ 263 (284)
+|++|+..
T Consensus 156 ~f~~l~~~ 163 (165)
T cd04140 156 LFQELLNL 163 (165)
T ss_pred HHHHHHhc
Confidence 99998753
No 72
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=221.29 Aligned_cols=164 Identities=21% Similarity=0.375 Sum_probs=144.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+|+|++|||||||+++|++.++. ...+|++.++..+.+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999888 556688999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++++|+.+..|+..+.......+| ++|+||+||. . ......+++.++++.++++++++||+++.||+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA----H-RRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999988776554455 7999999962 2 1223467888999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|+++++.+++.
T Consensus 160 f~~l~~~~~~~ 170 (210)
T PLN03108 160 FIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 73
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=1.1e-31 Score=220.25 Aligned_cols=171 Identities=20% Similarity=0.299 Sum_probs=150.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+|++|||++++|||+|+..|..+.|...|.++-.|-+...+.++ |+.+.+.+|||+|||+|..+++..|+++|+||+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4789999999999999999999999999666555557777888995 999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023316 178 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSAT 248 (284)
Q Consensus 178 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~-~~~~~~Sa~ 248 (284)
||++.+++||+++. +|+.+++++++..|.||||+|.||+++... ....+..+++.++|++.| +.|+|+||+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~ 162 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL 162 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence 99999999999986 899999999999888999999998743211 112344889999999999 589999999
Q ss_pred CCcCHHHHHHHHHHHHhCCcc
Q 023316 249 HNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++.|++++|+..+..++..+.
T Consensus 163 tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 163 TQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhCCcHHHHHHHHHHHhcccc
Confidence 999999999999999988765
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=2e-30 Score=210.75 Aligned_cols=160 Identities=16% Similarity=0.261 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+++|++..+...+.++..+...+.+.+++..+.+++|||+|++++..++..+++++|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 59999999999999999999999888444433335556777888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
++++++|+++..|+..+.+... +.|.|+||||+|+. +. .....+++..+++..+++++++||++|.|++++|+
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 155 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----SE-RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFY 155 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHH
Confidence 9999999999999988876532 34447999999962 21 22335677888888899999999999999999999
Q ss_pred HHHHHHh
Q 023316 259 FIMAKLF 265 (284)
Q Consensus 259 ~l~~~i~ 265 (284)
+++..+.
T Consensus 156 ~l~~~~~ 162 (164)
T smart00173 156 DLVREIR 162 (164)
T ss_pred HHHHHHh
Confidence 9998764
No 75
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.3e-30 Score=211.75 Aligned_cols=159 Identities=21% Similarity=0.371 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
+||+++|++|||||||++++..+ .+. ...+|+|.++..+.+.++ +..+.+.+|||+|++.+..++..+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999999865 566 455688999888877775 67799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+|||++++++|+++..|++.+.+.....|.|+|+||+|+. +. ......++..++...+++++++||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA----DK-AEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence 9999999999999999999998876555668999999962 11 222345566778888899999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|+.+++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99999875
No 76
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=2.2e-30 Score=217.75 Aligned_cols=165 Identities=15% Similarity=0.204 Sum_probs=135.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccccC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD 171 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~~~ 171 (284)
+||+|+|++|||||||+++|++++|. ...+|++.+++...+.++|..+.+++|||+|.+.+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999999988 55668888887777888999999999999998765322 2345789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEc
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSS 246 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~S 246 (284)
+|++|+|||+++++||+.+..|++.+.+.. ...|.|+||||+|+. .. +.+..+++..++. ..+++|++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ----RH-RFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc----cc-ccccHHHHHHHHHHhcCCcEEEec
Confidence 999999999999999999999999987763 334447999999962 22 2233555666654 5689999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCccc
Q 023316 247 ATHNINVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~~~~ 270 (284)
|++|.||+++|+.++..++.....
T Consensus 156 ak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 156 AKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhccCCC
Confidence 999999999999999998866543
No 77
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.8e-30 Score=212.88 Aligned_cols=160 Identities=27% Similarity=0.465 Sum_probs=139.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-ccccccccCCcEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF 177 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~iil 177 (284)
.+||+++|++|||||||+++++...+. ...++.+.++..+.+.+++..+.+++|||+|++++. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 489999999999999999999999988 556688889988889999999999999999999987 578889999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN 252 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~---~~~ 252 (284)
|||++++++|+.+..|++.+..+. .+.|.|+|+||+|+. .. ..+..+++..+++..+++|+++||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR----EQ-IQVPTDLAQRFADAHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch----hh-cCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence 999999999999999999998764 234458999999962 21 22336778888999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 023316 253 VNKIFKFIMAKL 264 (284)
Q Consensus 253 v~~lf~~l~~~i 264 (284)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 78
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=3.4e-30 Score=209.10 Aligned_cols=159 Identities=16% Similarity=0.258 Sum_probs=134.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++++++.+...+ ++++ +.......+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 479999999999999999999998887444 4555 44456677889889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++++|+++..|+..+.+.. .+.|.|+|+||+|+. .. .....+++..+++..+++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----HQ-RKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----cc-ceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence 99999999999999999987753 234557999999962 21 222355678888888999999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|+++++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 79
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.2e-30 Score=209.53 Aligned_cols=165 Identities=17% Similarity=0.272 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|+|||||+++|.++++...+.++..+.....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 59999999999999999999999988544444445555677888989999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-------cccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023316 181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMKA-TLFFSSATHNI 251 (284)
Q Consensus 181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-------~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~ 251 (284)
++++++|+++. .|++.+.+..+..|.++||||+||.++-... ...+..+++..+++.+++ +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999996 7999888775566668999999973221100 112336778899999986 79999999999
Q ss_pred CHHHHHHHHHHHHh
Q 023316 252 NVNKIFKFIMAKLF 265 (284)
Q Consensus 252 ~v~~lf~~l~~~i~ 265 (284)
|++++|+.++..++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=6e-30 Score=207.15 Aligned_cols=158 Identities=23% Similarity=0.437 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||++++++.++. ...++++.++..+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988 56678899999999999998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++|+.+..|+..+...... .|.++++||+|+. . ......++...+++..+++++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS----D-KRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc----c-cCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999998776553 4557999999962 1 122346677888888899999999999999999999
Q ss_pred HHHHH
Q 023316 259 FIMAK 263 (284)
Q Consensus 259 ~l~~~ 263 (284)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=9.9e-30 Score=215.81 Aligned_cols=168 Identities=26% Similarity=0.458 Sum_probs=143.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.+..+....++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999988876667888888888888888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHH-HHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 179 FDLTSRCTLNSIVG-WYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~~s~~~~~~-~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
||++++++|+++.. |...+..+.. ..+.|+|+||+|+. .. .....++...+++..++.|+++||+++.|+++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----~~-~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----SE-RDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-CccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999975 7777765532 33558999999963 22 12235677788888999999999999999999
Q ss_pred HHHHHHHHHhCCcccc
Q 023316 256 IFKFIMAKLFNLPWTV 271 (284)
Q Consensus 256 lf~~l~~~i~~~~~~~ 271 (284)
+|+++...+...+...
T Consensus 168 l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 168 CFEELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999998776443
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=7.7e-30 Score=206.82 Aligned_cols=161 Identities=26% Similarity=0.489 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||++++.+..+. ...++.+.++....+.+++..+.+++||++|++++..+...+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999999999887 55568888888888889998899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++++.+..|++.+..+....+| ++|+||+|+. .. .....+.++++++.++++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE----DQ-RQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----cc-cCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887644455 7999999962 11 12235667788888999999999999999999999
Q ss_pred HHHHHHhC
Q 023316 259 FIMAKLFN 266 (284)
Q Consensus 259 ~l~~~i~~ 266 (284)
++...+.+
T Consensus 156 ~i~~~~~~ 163 (164)
T smart00175 156 ELAREILK 163 (164)
T ss_pred HHHHHHhh
Confidence 99988754
No 83
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.5e-29 Score=205.25 Aligned_cols=160 Identities=29% Similarity=0.478 Sum_probs=140.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
++||+++|++|||||||++++.++++.. ..++.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999999884 667889888888999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||++++++|+.+..|+..+........| ++++||+|+. .. .....++...+++.++++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----SK-RQVSTEEAQEYADENGLLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999887644444 7999999962 11 2233566778888889999999999999999999
Q ss_pred HHHHHHH
Q 023316 258 KFIMAKL 264 (284)
Q Consensus 258 ~~l~~~i 264 (284)
++++..+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9999875
No 84
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1e-29 Score=208.37 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=136.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
..+||+++|++|||||||+++|++++|. .. .+|++.++..+.+.++|..+.+.+||++|++.+..++..+++++|++|
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999999999987 44 458888888788888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++|+.+..|++.+... .+.|.++|+||+|+. +. ......+..++++.+++ .++++||++|.|+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLD----EQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEccccc----cc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHH
Confidence 999999999999999999876432 234558999999962 21 11123445677888887 479999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+.+++.+.+
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 85
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.3e-29 Score=206.50 Aligned_cols=158 Identities=18% Similarity=0.308 Sum_probs=130.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcEEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~iilv~ 179 (284)
||+++|++|||||||+++++.+.+...++ +++.. ..+.+.+++..+.+++|||+|++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 69999999999999999999988875444 54433 356677889999999999999996 3456778899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC-cCHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN-INVNK 255 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~-~~v~~ 255 (284)
|+++++||+.+..|+..+..... +.|.|+||||+|+. .. ..+..+++..+++..+++|+++||++| .||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL----HY-RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH----Hh-CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence 99999999999999998887642 45558999999962 11 223367788889999999999999999 59999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 86
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=1.6e-29 Score=219.10 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=132.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|++++|...+ +|++ ++..+.+.+++..+.++||||+|++.|..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999998554 4554 777788899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH---------C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023316 180 DLTSRCTLNSIVGWYSEARKW---------N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT 248 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~---------~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~ 248 (284)
|+++++||+++..|++++... . .+.|.|+|+||+|+. .. ..+..+++.+++.. .++.++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~----~~-~~v~~~ei~~~~~~~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD----FP-REVQRDEVEQLVGGDENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch----hc-cccCHHHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999999998754 1 234448999999962 11 22335666666553 46889999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMAKL 264 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i 264 (284)
+|.|++++|++++..+
T Consensus 155 tg~gI~elf~~L~~~~ 170 (247)
T cd04143 155 KNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 87
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=2.7e-29 Score=214.61 Aligned_cols=162 Identities=17% Similarity=0.206 Sum_probs=134.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc-CCcEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF 177 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~-~ad~iil 177 (284)
+||+++|++|||||||+++|+++++. ..+. +.+.++..+++.+++..+.+.+|||+|++. .+...+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999988886 5555 444588888899999999999999999982 34455667 9999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||+++++||+.+..|++.+.+.. ...|.|+|+||+|+. .. ..+..+++..++..++++++++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA----RS-REVSVQEGRACAVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc----cc-ceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999998764 344558999999962 22 22335667888888999999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023316 256 IFKFIMAKLFNLPW 269 (284)
Q Consensus 256 lf~~l~~~i~~~~~ 269 (284)
+|+++++.+.....
T Consensus 154 l~~~l~~~~~~~~~ 167 (221)
T cd04148 154 LLEGIVRQIRLRRD 167 (221)
T ss_pred HHHHHHHHHHhhhc
Confidence 99999998864443
No 88
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=1.1e-29 Score=212.34 Aligned_cols=163 Identities=18% Similarity=0.295 Sum_probs=145.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|.+|||||+|+.+|..+.|...|.++..+.+.+.+.+++..+.+.|+||+|+++|..+...++++++++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 36899999999999999999999999996666555588999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|+++++.||+.+..+++.|.+. .....| |+||||+|| ... +.+..++++.+++.++++|+|+||+.+.||+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl----~~~-R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDL----ERE-RQVSEEEGKALARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccc----hhc-cccCHHHHHHHHHhcCCcEEEeeccCCcCHHHH
Confidence 9999999999999999999443 334445 799999997 221 444588899999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
|..+++.+-.
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 89
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=4.9e-29 Score=203.83 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=134.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
++||+++|++|||||||+++|.++.+...+ +|++. ...+.+.+++..+.+++|||+|+++|..+++.+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIED-SYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh-eEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 379999999999999999999999987444 45554 4467778889889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC-C-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN-Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~-~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v~~ 255 (284)
||++++++|+.+..|.+.+.+.. . +.|.|+++||.|+. +. +....+++..+++.++ ++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE----DD-RQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----cc-CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 99999999999999999887642 2 34447999999962 22 2223556777888887 8999999999999999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
+|++++..++
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998664
No 90
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=5.8e-29 Score=204.33 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=134.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.||+++|++|||||||+++|.++.+.. ..+|.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 599999999999999999999999884 4456665543 56778888999999999999999999989999999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316 180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHN 250 (284)
Q Consensus 180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~ 250 (284)
|++++++|+++. .|+..+.+...+.|+++|+||+|+...... ....+...+++++++..+. +++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999999985 699988877666666899999997322100 0111235678888888875 8999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++|+++++.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=4.5e-29 Score=204.02 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=139.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||++++.+..+. ...++.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999887 44568888888888889999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~-----~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v 253 (284)
|++++++|+++..|.+.+..... +.|+++|+||+|+.. + .....++...+++..+ ++++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE----K-RQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc----c-cccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 99999999999999988766543 345579999999621 1 2223566777888887 79999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023316 254 NKIFKFIMAKLFNL 267 (284)
Q Consensus 254 ~~lf~~l~~~i~~~ 267 (284)
+++|+++.+.+++.
T Consensus 156 ~~l~~~i~~~~~~~ 169 (172)
T cd01862 156 EQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988765
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=7e-29 Score=201.00 Aligned_cols=157 Identities=24% Similarity=0.455 Sum_probs=137.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++|.+..+. ...++.+.++....+.+++..+.+.+|||+|++.+..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999999999887 46668888888778888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|++++++|+.+..|++.+.++.. ..|.++|+||+|+. ......++...+++..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence 99999999999999999988743 33447999999962 12223567788888899999999999999999999
Q ss_pred HHHHHH
Q 023316 258 KFIMAK 263 (284)
Q Consensus 258 ~~l~~~ 263 (284)
+.+...
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 998865
No 93
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=6.5e-29 Score=200.68 Aligned_cols=159 Identities=27% Similarity=0.510 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|.+|||||||+++++++.+. ...++++.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 59999999999999999999999887 44457777777778888888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++++.+..|++++.+......| ++|+||+|+. .. .....++..++++..+++++++||++|+|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~----~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE----RQ-RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654444 7999999962 22 22235667778888899999999999999999999
Q ss_pred HHHHHH
Q 023316 259 FIMAKL 264 (284)
Q Consensus 259 ~l~~~i 264 (284)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998865
No 94
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.1e-28 Score=205.53 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=138.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.||+++|++|+|||||++++..+.+.. ..+|.+.++. ..+.+++..+.+.+|||+|++.+....+.++++++++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 699999999999999999999888774 3345554443 46677888899999999999999888888899999999999
Q ss_pred eCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-----cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316 180 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAKAMKA-TLFFSSATHNIN 252 (284)
Q Consensus 180 d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~ 252 (284)
|+++.++|+++. .|++.+.++.++.|+|+||||+|+..+.... .+.+..+++..+++.+++ +|++|||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999997 6999998877776668999999974321111 122335678889999985 899999999999
Q ss_pred HHHHHHHHHHHHhCCcc
Q 023316 253 VNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 253 v~~lf~~l~~~i~~~~~ 269 (284)
|+++|+++++.+.....
T Consensus 161 v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 161 VDDVFEAATRAALLVRK 177 (187)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 99999999988765543
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2e-28 Score=199.90 Aligned_cols=161 Identities=24% Similarity=0.415 Sum_probs=139.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||++++.+..+. ...++++.++..+.+.+++..+.+.+||++|++.|...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999988877 556688888888888999999999999999999999998999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++++|+.+..|+.++.......+| ++|+||+|+. .. .....+..+.+.+.....++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~----~~-~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA----ER-REVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999887655555 8999999962 22 222245567777777889999999999999999
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
|+++++.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99999765
No 96
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=4.1e-28 Score=198.07 Aligned_cols=161 Identities=20% Similarity=0.281 Sum_probs=127.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+++|.++++...++++..++ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999999875566544433 3445567788999999999999988888888999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHcC--CcEEEEcCCCCcCHHHH
Q 023316 181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAMK--ATLFFSSATHNINVNKI 256 (284)
Q Consensus 181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~l 256 (284)
++++++|+++. .|++.++......|+++|+||+|+.+ .... ..+++...+++.++ .+++++||++|.|++++
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 155 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRD----GSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEV 155 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc----ccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHH
Confidence 99999999985 79888887766556689999999732 1111 11333444444443 37999999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
|+.+...+..
T Consensus 156 f~~~~~~~~~ 165 (166)
T cd01893 156 FYYAQKAVLH 165 (166)
T ss_pred HHHHHHHhcC
Confidence 9999988764
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=5.6e-28 Score=195.71 Aligned_cols=159 Identities=16% Similarity=0.243 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|++|||||||+++++..++...+. +++ +...+...+++..+.+++|||+|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999999885444 554 444566778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|++++.+|+++..|+..+.... .+.|+++|+||+|+.. . ......+...+++.++++++++||++|.|++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~----~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED----K-RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc----c-cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 9999999999999998888763 3455589999999631 1 1123556677888888999999999999999999
Q ss_pred HHHHHHHh
Q 023316 258 KFIMAKLF 265 (284)
Q Consensus 258 ~~l~~~i~ 265 (284)
++++..+.
T Consensus 155 ~~l~~~~~ 162 (164)
T cd04139 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHH
Confidence 99998775
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=1.2e-28 Score=201.90 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=121.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||+++|..+.+....+|+|.++. .+.. ..+.+++|||+|++++..+++.+++++|++|+||
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~ 84 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 84 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 68999999999999999999998888766678887764 3333 4578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCcC
Q 023316 180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNIN 252 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa~~~~~ 252 (284)
|++++.+|+++..|+.++... ..+.|.+||+||+|+. .. ...++++.+++ ...+.++++||++|.|
T Consensus 85 D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~g 157 (168)
T cd04149 85 DSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP----DA---MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDG 157 (168)
T ss_pred eCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc----cC---CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCC
Confidence 999999999998887776543 2344558999999962 11 22344444432 1235789999999999
Q ss_pred HHHHHHHHHH
Q 023316 253 VNKIFKFIMA 262 (284)
Q Consensus 253 v~~lf~~l~~ 262 (284)
|+++|++|.+
T Consensus 158 v~~~~~~l~~ 167 (168)
T cd04149 158 LYEGLTWLSS 167 (168)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 99
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.7e-28 Score=204.12 Aligned_cols=166 Identities=23% Similarity=0.361 Sum_probs=141.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++++.+.+. ...+|.+.++....+..++..+.+++|||+|+++|..++..++++++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 445699999999999999999999988887 5567899999888888888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
++|||+++++||.++..|+..+.......|.+++|||+|+. + ... ..+...+++..++.++++||++|.|+++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~----~--~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 158 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK----D--RQV-KARQITFHRKKNLQYYDISAKSNYNFEK 158 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc----c--ccC-CHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999998776555557899999962 1 111 1223457778889999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023316 256 IFKFIMAKLFNLPW 269 (284)
Q Consensus 256 lf~~l~~~i~~~~~ 269 (284)
+|.++++.+...+.
T Consensus 159 ~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 159 PFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHhhccc
Confidence 99999999876543
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.1e-28 Score=203.45 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=121.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||++++..+++....+|+|.++.. +.. ..+.+++|||+|++++..++..|++++|++|+||
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~ 88 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVV 88 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 589999999999999999999888877666788877653 333 3478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCcC
Q 023316 180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNIN 252 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~~ 252 (284)
|+++++++++...|+..+... ....|.+||+||+||.+..+ .++.... ++...+.++++||++|.|
T Consensus 89 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (175)
T smart00177 89 DSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMK-------AAEITEKLGLHSIRDRNWYIQPTCATSGDG 161 (175)
T ss_pred ECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCC-------HHHHHHHhCccccCCCcEEEEEeeCCCCCC
Confidence 999999999999888877543 23344579999999632211 1111111 122234577899999999
Q ss_pred HHHHHHHHHHHHh
Q 023316 253 VNKIFKFIMAKLF 265 (284)
Q Consensus 253 v~~lf~~l~~~i~ 265 (284)
|+++|++|...+.
T Consensus 162 v~e~~~~l~~~~~ 174 (175)
T smart00177 162 LYEGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987753
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=1.8e-28 Score=199.05 Aligned_cols=152 Identities=17% Similarity=0.225 Sum_probs=118.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||++++..+++....||+|.++. .+.. ..+.+++|||+|++++..++..+|+++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 5899999999999999999988888766778887753 3333 35778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHH
Q 023316 181 LTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVN 254 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~Sa~~~~~v~ 254 (284)
++++.+|+++..|+..+... . ...|.+|++||+||. .. ....+....++ ...++.++++||++|+||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~ 150 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLP----NA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCC----CC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence 99999999999888777543 2 234557999999962 11 11122222222 1234467789999999999
Q ss_pred HHHHHHHH
Q 023316 255 KIFKFIMA 262 (284)
Q Consensus 255 ~lf~~l~~ 262 (284)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99999864
No 102
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.7e-27 Score=194.53 Aligned_cols=162 Identities=21% Similarity=0.339 Sum_probs=132.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+++|++.++...+.++..+.....+..++..+.+++|||+|++++......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 59999999999999999999999986333333334455666778889999999999999998888899999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC------cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316 181 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAYAKAMKA-TLFFSSATHNIN 252 (284)
Q Consensus 181 ~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~ 252 (284)
++++.+|.... .|+..+..+....|.++|+||+|+....+.. ......+++..++..+++ +++++||++|+|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEG 160 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCC
Confidence 99999998875 6998888877666668999999973221110 011236677888888887 999999999999
Q ss_pred HHHHHHHHHH
Q 023316 253 VNKIFKFIMA 262 (284)
Q Consensus 253 v~~lf~~l~~ 262 (284)
++++|.++++
T Consensus 161 i~~l~~~i~~ 170 (171)
T cd00157 161 VKEVFEEAIR 170 (171)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 103
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=3.8e-28 Score=198.99 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=126.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
||+++|+++||||||+++|.+..+....+|+|.++. .+.. ..+.+++|||+|++++..++..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 689999999999999999999987776678887764 3333 357789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCH
Q 023316 182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINV 253 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v 253 (284)
+++++|+++..|+..+.+.. .+.|.+||+||+||. . ....++++++++..+ +.++++||++|.||
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA----G---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc----c---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 99999999999998886542 234557999999962 1 123455555554322 36788999999999
Q ss_pred HHHHHHHHHHHhCCcc
Q 023316 254 NKIFKFIMAKLFNLPW 269 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~~ 269 (284)
+++|+++++.+...++
T Consensus 150 ~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 150 YEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999988876543
No 104
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.1e-27 Score=201.47 Aligned_cols=150 Identities=23% Similarity=0.305 Sum_probs=121.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-----CeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ 174 (284)
+||+++|+++||||||+++|+++.|. ...+|+|.++..+.+.++ +..+.+++|||+|+++|..++..||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999998 555688988887877774 578999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHC-------------------CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWN-------------------QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY 234 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~-------------------~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 234 (284)
+|+|||+++++||+++..|++++.... ...+| ||||||+||.+... ............+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~-~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE-SSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcc-cchHHHhhHhhhH
Confidence 999999999999999999999997642 22345 79999999732100 0011113345577
Q ss_pred HHHcCCcEEEEcCCCCc
Q 023316 235 AKAMKATLFFSSATHNI 251 (284)
Q Consensus 235 a~~~~~~~~~~Sa~~~~ 251 (284)
|++.+++.++.++.+..
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 89999999998887544
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.1e-27 Score=191.86 Aligned_cols=156 Identities=26% Similarity=0.479 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+||+++|.++||||||++++.+.++. ...+|.+.++....+.+++..+.+.+||++|++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988 44678899999899999888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|++++++++.+..|+..+..... ..|.++++||+|+. . ......++.+.++...+++++++||+++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE----D-QRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc----c-cccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 99999999999999999988874 44447999999962 1 122336778888888899999999999999999999
Q ss_pred HHH
Q 023316 259 FIM 261 (284)
Q Consensus 259 ~l~ 261 (284)
++.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 986
No 106
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1.9e-27 Score=199.83 Aligned_cols=164 Identities=15% Similarity=0.211 Sum_probs=132.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
||+++|++|||||||+++|+++++...+.++..++..+.+.+++..+.+++||++|++.|..++..+++++|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 79999999999999999999999885554333356667788888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCCcCHHHHHH
Q 023316 182 TSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
+++++|+.+..|+..+..... ..|.|+|+||+|+... . .....++..+.+. ..+++++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---~-~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE---E-RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc---c-ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence 999999999999998887643 3455899999996321 1 1222333333333 4568899999999999999999
Q ss_pred HHHHHHhCCcc
Q 023316 259 FIMAKLFNLPW 269 (284)
Q Consensus 259 ~l~~~i~~~~~ 269 (284)
++++.+.-.++
T Consensus 157 ~l~~~~~~~~~ 167 (198)
T cd04147 157 ELLRQANLPYN 167 (198)
T ss_pred HHHHHhhcccc
Confidence 99998765544
No 107
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=3.9e-28 Score=201.55 Aligned_cols=167 Identities=16% Similarity=0.170 Sum_probs=133.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||++++..+++....+|.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999988866788888877666655 44678899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCC
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHN 250 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~~ 250 (284)
||+++.++++.+..|+.++.+.. ...|.++|+||+|+.+ . ...++...+.. ..+++++++||++|
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN----A---LSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc----c---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 99999999999999998887653 2345589999999621 1 11223333332 12356889999999
Q ss_pred cCHHHHHHHHHHHHhCCcccccc
Q 023316 251 INVNKIFKFIMAKLFNLPWTVKR 273 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~~~~~~ 273 (284)
+|++++|+++++.+.+.....+.
T Consensus 156 ~gi~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 156 EGLQEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999998766554443
No 108
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=5.6e-28 Score=200.34 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=121.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|+++||||||++++..+++....||+|.++. .+.. ..+.+++||++|+++++.++..||+++|++|+||
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998888766678887754 3433 3577999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCCC
Q 023316 180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSATH 249 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~Sa~~ 249 (284)
|++++++++++..|+..+... ..+.|.+||+||+|+... . ..+ ++.+..++ .++++||++
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~----~---~~~---~~~~~l~l~~~~~~~~~~~~~Sa~~ 162 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA----M---NAA---EITDKLGLHSLRQRHWYIQSTCATS 162 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC----C---CHH---HHHHHhCccccCCCceEEEeccCCC
Confidence 999999999988887776432 234455799999996321 1 122 22333332 355799999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
|+||.++|++|+..+.++
T Consensus 163 g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 163 GEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCHHHHHHHHHHHHhhc
Confidence 999999999999887654
No 109
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.2e-28 Score=199.49 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=123.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
|+++|++|||||||+++|+++.+. ...+|+|.+. ..+++..+.+++|||+|+++|..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999999998877 5556778653 23455668899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch---HHHHHHHHHHcCCcEEEEcCCC------CcC
Q 023316 182 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI---ATQARAYAKAMKATLFFSSATH------NIN 252 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~Sa~~------~~~ 252 (284)
+++.+|.+++.|+.++.....+.|.++|+||+|+. ....... ..++..++++.++.++++||++ ++|
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLP----AARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCc----CCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 99999999999999887655555558999999963 2211110 1235667777889999988888 999
Q ss_pred HHHHHHHHHH
Q 023316 253 VNKIFKFIMA 262 (284)
Q Consensus 253 v~~lf~~l~~ 262 (284)
|+++|+.++.
T Consensus 154 v~~~~~~~~~ 163 (164)
T cd04162 154 VKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHhc
Confidence 9999998864
No 110
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=3.7e-27 Score=189.97 Aligned_cols=157 Identities=20% Similarity=0.354 Sum_probs=134.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
||+++|++|||||||++++++..+...+ ++++ +...+.+.+++..+.+++||++|++.+..++..+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7999999999999999999998877444 4555 6667777888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
++++++++++..|+..+..... ..|.++|+||+|+. . ......+++..+++..+++++++||+++.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE----N-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc----c-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence 9999999999999998887755 44447999999962 2 123346778888888889999999999999999999
Q ss_pred HHHHHH
Q 023316 259 FIMAKL 264 (284)
Q Consensus 259 ~l~~~i 264 (284)
++++.+
T Consensus 155 ~l~~~i 160 (160)
T cd00876 155 LLVREI 160 (160)
T ss_pred HHHhhC
Confidence 998753
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=8.8e-28 Score=199.33 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=121.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||++++..+++....+|++.++. .+.. ..+.+++|||+|+++++.++..|++++|++|+||
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988888766678887654 3333 4578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v 253 (284)
|++++++|+++..|+..+... ..+.|.+||+||.|+. +... ..+....+ ++...+.++++||++|.|+
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~----~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP----NAMS--TTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC----CCCC--HHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 999999999998877776432 2234457999999962 2111 11111111 1222345678999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023316 254 NKIFKFIMAKLFNL 267 (284)
Q Consensus 254 ~~lf~~l~~~i~~~ 267 (284)
+++|+++.+.+..+
T Consensus 167 ~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 167 YEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
No 112
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=7.3e-27 Score=192.87 Aligned_cols=167 Identities=19% Similarity=0.253 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.||+++|++|||||||++++.+..+.. ..++++..+ ...+.+++..+.+++|||+|+++|..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999998874 455665444 466777888889999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|+++.++|+.+..|+..+.+.. .+.|.|+|+||+|+. .. .....++...+++.++++++++||+++.|+.++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----TQ-RQVSTEEGKELAESWGAAFLESSARENENVEEAF 155 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh----hc-CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988887653 234558999999962 21 1122455677888888999999999999999999
Q ss_pred HHHHHHHhCCcccccc
Q 023316 258 KFIMAKLFNLPWTVKR 273 (284)
Q Consensus 258 ~~l~~~i~~~~~~~~~ 273 (284)
.++.+.+...+.....
T Consensus 156 ~~l~~~~~~~~~~~~~ 171 (180)
T cd04137 156 ELLIEEIEKVENPLDP 171 (180)
T ss_pred HHHHHHHHHhcCCCCC
Confidence 9999988766544433
No 113
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=5.9e-27 Score=192.49 Aligned_cols=153 Identities=20% Similarity=0.223 Sum_probs=121.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||++++.+..+....+|.|... ..+.++ .+.+++|||+|++.++.++..+++++|++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999999886655566777544 345555 36789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa~~~~ 251 (284)
||++++.+|+++..|+..+... ..+.|.++|+||+|+.+ .. ..++...+.+ ..+++++++||++|.
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG----AL---SEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc----CC---CHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 9999999999998888887543 23445589999999632 11 2333444432 346789999999999
Q ss_pred CHHHHHHHHHH
Q 023316 252 NVNKIFKFIMA 262 (284)
Q Consensus 252 ~v~~lf~~l~~ 262 (284)
|++++|++++.
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 114
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.95 E-value=7e-29 Score=196.83 Aligned_cols=168 Identities=18% Similarity=0.328 Sum_probs=151.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+|++++|..+|||||++++|+.+-|. ++..|+|.++....+.+++..+.+.+|||+||++|..+...||++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 34699999999999999999999999999 44559999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+||+.+|+.||+.+..|++++.......|-++|-||+||. + ...+...+.+.+++..+..++.+|++...||..+
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlv----e-ds~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLV----E-DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhh----H-hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 9999999999999999999999888777779999999973 1 1334478889999999999999999999999999
Q ss_pred HHHHHHHHhCCccc
Q 023316 257 FKFIMAKLFNLPWT 270 (284)
Q Consensus 257 f~~l~~~i~~~~~~ 270 (284)
|..++..+.++..+
T Consensus 173 F~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 173 FAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988766543
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=6.2e-27 Score=189.35 Aligned_cols=155 Identities=17% Similarity=0.244 Sum_probs=119.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
||+++|++|||||||+++|.+.++....+|.+.++. .+..+ ..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999988766677776543 33333 457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHH--HHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
+++.++..+..|+.++.+.. .+.|.++|+||+|+....+ ....... ...++...+++++++||++|+|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT---AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC---HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999999998888876532 3445589999999631111 1111111 122333345679999999999999999
Q ss_pred HHHHH
Q 023316 258 KFIMA 262 (284)
Q Consensus 258 ~~l~~ 262 (284)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=202.93 Aligned_cols=141 Identities=23% Similarity=0.311 Sum_probs=118.2
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-------------eEEEEEEEeCCCCcCCc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-------------~~~~l~l~Dt~G~e~~~ 162 (284)
....+||+|+|+.|||||||+++|+++.|. ...+|+|.++..+.+.+++ ..+.++||||+|+++|.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 445799999999999999999999999998 5556999998888777753 56889999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-------------CCceEEEEeCCCCCCCCCCCc-cc---
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-------------TAIPILIGTKFDDFVRLPPDL-QW--- 225 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-------------~~~~Ilv~nK~Dl~~~~~~~~-~~--- 225 (284)
.++..||++++++|+|||+++++||+++..|++++..... ..++||||||+||.. ... +.
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~---~~~~r~~s~ 174 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP---KEGTRGSSG 174 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc---ccccccccc
Confidence 9999999999999999999999999999999999987631 234479999999732 111 11
Q ss_pred chHHHHHHHHHHcCC
Q 023316 226 TIATQARAYAKAMKA 240 (284)
Q Consensus 226 ~~~~~~~~~a~~~~~ 240 (284)
+..+++++||++.|+
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 247899999999884
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=3.2e-26 Score=188.42 Aligned_cols=153 Identities=17% Similarity=0.214 Sum_probs=120.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|+|||||++++..+++....+|.+.++. .+.++ .+.+.+|||+|++.+...+..+++++|++|+||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 57999999999999999999999888776778887654 34444 477899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a----~~~~~~~~~~Sa~~~~~v 253 (284)
|+++++++.....|+..+.+.. .+.|.++++||+|+.+.. ...+....+. +..+++++++||++|.|+
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TPAEISESLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence 9999999998888777775442 234558999999963211 1111122222 334567999999999999
Q ss_pred HHHHHHHHH
Q 023316 254 NKIFKFIMA 262 (284)
Q Consensus 254 ~~lf~~l~~ 262 (284)
+++|++|.+
T Consensus 165 ~e~~~~l~~ 173 (174)
T cd04153 165 PEGLDWIAS 173 (174)
T ss_pred HHHHHHHhc
Confidence 999999864
No 118
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=2.2e-26 Score=186.29 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=114.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+|+++|++|||||||+++|.+..+ . ...+|+|.... .+. ...+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999999864 3 44567775543 233 33577899999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH--HcCCcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~Sa~~~~~v 253 (284)
|++++.++.....|+..+.+.. ...|.++|+||+|+.. ........+...+.. ...++++++||++|.|+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~----~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD----ALTAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC----CCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 9999999999888988876531 2344479999999632 111111111111111 12346899999999999
Q ss_pred HHHHHHHHH
Q 023316 254 NKIFKFIMA 262 (284)
Q Consensus 254 ~~lf~~l~~ 262 (284)
+++|++|.+
T Consensus 153 ~~~~~~l~~ 161 (162)
T cd04157 153 DEGVQWLQA 161 (162)
T ss_pred HHHHHHHhc
Confidence 999999864
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=1.9e-26 Score=186.50 Aligned_cols=151 Identities=20% Similarity=0.262 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
||+++|+++||||||++++..+.+....+|++.++. .+.. ..+.+++|||+|++.+..++..+++.+|++|+|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 799999999999999999988887766677777654 3333 457789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHh-HC-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHHH
Q 023316 182 TSRCTLNSIVGWYSEARK-WN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~-~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+++.++.....|+..+.+ .. .+.|.++|+||+|+.+. . ...+....+ ....+.+++++||++|.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~----~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA----L--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC----C--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence 999988877766655433 22 34455899999996311 1 111111112 112245799999999999999
Q ss_pred HHHHHHH
Q 023316 256 IFKFIMA 262 (284)
Q Consensus 256 lf~~l~~ 262 (284)
+|+++++
T Consensus 151 l~~~l~~ 157 (158)
T cd04151 151 GMDWLVN 157 (158)
T ss_pred HHHHHhc
Confidence 9999875
No 120
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=2.1e-25 Score=183.99 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=122.7
Q ss_pred CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 023316 123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (284)
Q Consensus 123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~ 201 (284)
+.|. .+.+|+|.++..+.+.+++..+.+.||||+|++++..++..|++++|++|+|||+++++||+++..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 4566 456799999999999999999999999999999999999999999999999999999999999999999997765
Q ss_pred CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316 202 QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 202 ~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~ 270 (284)
....| ||||||+||. .. ..+..+++..+++.+++.|+++||++|.||+++|++++..+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~----~~-~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG----DL-RKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 43344 7999999973 11 22346678888999999999999999999999999999999776544
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=2.2e-25 Score=179.96 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=118.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
||+++|.+|||||||++++++.++....+|.+.+.. .+.++ .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 799999999999999999999986666667776654 34444 46788999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCcCHH
Q 023316 182 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~~v~ 254 (284)
++++++.....|+..+.... ...|.++++||+|+. ... ..++.... +....++++++||++|.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP----GAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc----ccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence 99999999998888776642 244557999999962 111 11122222 12245689999999999999
Q ss_pred HHHHHHHH
Q 023316 255 KIFKFIMA 262 (284)
Q Consensus 255 ~lf~~l~~ 262 (284)
++|++|..
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99999874
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=4.9e-25 Score=183.58 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=121.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
...||+++|++|||||||++++.++++....+|.+... ..+.+++ +.+.+||++|++.+..++..++++++++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 36899999999999999999999988765556666543 3555665 5688999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----------------cCC
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----------------MKA 240 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----------------~~~ 240 (284)
+|+++.++|+....|+..+.+.. .+.|.++++||+|+.. ....++.+.+... ..+
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCHHHHHHHhCcccccccccccccccCceeE
Confidence 99999999998888888876542 2345589999999621 1123444444432 235
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHH
Q 023316 241 TLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 241 ~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++++|||++|+|++++|+++++.
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhh
Confidence 68999999999999999999875
No 123
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.93 E-value=2.7e-25 Score=181.78 Aligned_cols=152 Identities=15% Similarity=0.164 Sum_probs=117.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+|+++|++|||||||++++.+. +. ...+|.|.+. ..+.++ .+.+++||++|+++++.++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999999977 54 5566878653 345554 4678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch---HHHHHHHHHHcC--CcEEEEcCCCC---
Q 023316 181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI---ATQARAYAKAMK--ATLFFSSATHN--- 250 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~---~~~~~~~a~~~~--~~~~~~Sa~~~--- 250 (284)
++++.+|+++..|+..+.+.. ...|.++|+||+|+. ....... ...+..++++.+ +.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~----~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK----NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc----CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 999999999999999987653 234557999999963 2221111 111233443333 46777999998
Q ss_pred ---cCHHHHHHHHHH
Q 023316 251 ---INVNKIFKFIMA 262 (284)
Q Consensus 251 ---~~v~~lf~~l~~ 262 (284)
.|+.+.|+||..
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 899999999964
No 124
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=9.8e-25 Score=196.48 Aligned_cols=205 Identities=16% Similarity=0.142 Sum_probs=143.2
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHHH
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFVV 118 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl~ 118 (284)
.+++++|.+|.+|.++.+..++.... |.....|... +...-..++ .|.|||.||||||||++
T Consensus 111 ~~~~~~a~gg~gg~gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~lelk~~adVglVG~PNaGKSTLln 176 (335)
T PRK12299 111 GQRFLVAKGGKGGLGNAHFKSSTNRA-----PRYATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLIS 176 (335)
T ss_pred CcEEEEecCCCCcCCchhhccccCCC-----CccccCCCCC---------cEEEEEEEEcccCCEEEEcCCCCCHHHHHH
Confidence 57889999999999886655444332 2222222222 111111233 47799999999999999
Q ss_pred HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Cccccccc---ccCCcEEEEEEeCCChhhHHHH
Q 023316 119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDAVAILFMFDLTSRCTLNSI 190 (284)
Q Consensus 119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~---~~~ad~iilv~d~~~~~s~~~~ 190 (284)
++.+.+.. ..++.++.+.....+.+.+ ...+.+||++|..+ ...+...| +..++++|+|+|+++.++++++
T Consensus 177 ~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~ 255 (335)
T PRK12299 177 AVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDY 255 (335)
T ss_pred HHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHH
Confidence 99987766 6666444444445555532 23477999999753 22344444 4579999999999998899999
Q ss_pred HHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 191 VGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 191 ~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
..|.+++..+.+ ..|.|+|+||+|+. +. .....+....+++..+.+++++||++++|++++|+++...+...
T Consensus 256 ~~~~~EL~~~~~~L~~kp~IIV~NKiDL~----~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 256 KTIRNELEKYSPELADKPRILVLNKIDLL----DE-EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred HHHHHHHHHhhhhcccCCeEEEEECcccC----Cc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHhh
Confidence 999999988754 34558999999962 21 11123345555666778999999999999999999999887543
No 125
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=3.2e-25 Score=180.55 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=114.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ 174 (284)
+|+++|++|||||||++++.+... . ...+|.+.++. .+.+++ ..+.+|||+|++.+..++..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVGN--ARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEECC--EEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 589999999999999999976432 1 23446666654 445554 678899999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------cCCcEEEE
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MKATLFFS 245 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~ 245 (284)
+++|+|+++++++.....|+..+.+.. ...|.++++||+|+.. . ...++...+.+. .+++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD----A---LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc----C---CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999999999988888876542 2345589999999621 1 112233333222 34689999
Q ss_pred cCCCCcCHHHHHHHHHH
Q 023316 246 SATHNINVNKIFKFIMA 262 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~ 262 (284)
||++|.|++++|++|+.
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999864
No 126
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.92 E-value=5e-24 Score=191.66 Aligned_cols=201 Identities=15% Similarity=0.124 Sum_probs=141.5
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCChHHHHH
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFVV 118 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~KI~llG~~~vGKSsLl~ 118 (284)
.+++++|.+|.+|.++.+..++.... |.....|.... ...-..+ ..|+|+|.+|||||||++
T Consensus 110 ~~~~~~a~gg~gg~gn~~f~~~~~~~-----p~~~~~g~~g~---------~~~~~lelk~~adV~lvG~pnaGKSTLl~ 175 (329)
T TIGR02729 110 GQRFVVAKGGRGGLGNAHFKSSTNRA-----PRFATPGEPGE---------ERWLRLELKLLADVGLVGLPNAGKSTLIS 175 (329)
T ss_pred CcEEEecCCCCCCCCcccccCccCCC-----CcccCCCCCCc---------EEEEEEEeeccccEEEEcCCCCCHHHHHH
Confidence 56889999999999886655544432 22222222221 1111122 358899999999999999
Q ss_pred HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----ccccccccc---CCcEEEEEEeCCCh---hhH
Q 023316 119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIACK---DAVAILFMFDLTSR---CTL 187 (284)
Q Consensus 119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~~---~ad~iilv~d~~~~---~s~ 187 (284)
++.+.+.. ..++.++.......+.+++ ...+.+|||+|..+. ..+...|++ .++++|+|+|+++. +++
T Consensus 176 ~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~ 254 (329)
T TIGR02729 176 AVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI 254 (329)
T ss_pred HHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH
Confidence 99988765 5666333444444555554 355789999998642 245555544 69999999999987 788
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+++..|.+++..+.. ..|.|||+||+|+. +. ....+..+.+++.++.+++++||++++|++++|+++...+
T Consensus 255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~----~~--~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDLL----DE--EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHHhhhhhccCCEEEEEeCccCC----Ch--HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 999999999887753 45558999999962 21 2234555667777788999999999999999999998764
No 127
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.92 E-value=9.4e-24 Score=179.63 Aligned_cols=170 Identities=25% Similarity=0.310 Sum_probs=132.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|.++.+.. ..+|++..+........+..+.+.+|||+|+++|+.++..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999999995 445778788777777776689999999999999999999999999999999
Q ss_pred EeCCC-hhhHHHHHHHHHHHHhHCCC-CceEEEEeCCCCCCCCCCCc-------ccchHHHHHHHHHH---cCCcEEEEc
Q 023316 179 FDLTS-RCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKA---MKATLFFSS 246 (284)
Q Consensus 179 ~d~~~-~~s~~~~~~~~~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~a~~---~~~~~~~~S 246 (284)
||.++ ..+++....|.+++...... .++++|+||+||........ ...........+.. ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 45566667999999888754 55589999999743321110 01111111222221 233489999
Q ss_pred CC--CCcCHHHHHHHHHHHHhCCcc
Q 023316 247 AT--HNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 247 a~--~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++ ++.+|+++|..++..+.+...
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhh
Confidence 99 999999999999999875543
No 128
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=3.2e-24 Score=178.24 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=117.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|.+|||||||++++.++.+....+|.+.+. ..+.+++ +.+.+||++|++.++.++..+++++|++|+|+
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999987765455666543 3344444 66889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEEE
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFFS 245 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~~ 245 (284)
|+++++++.....|+.++.+.. ...|.++|+||+|+.... ..++..+.... ....++++
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~-------~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~ 165 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA-------SEDELRYALGLTNTTGSKGKVGVRPLEVFMC 165 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC-------CHHHHHHHcCCCcccccccccCCceeEEEEe
Confidence 9999999999988888775432 344558999999963211 12222222110 13458899
Q ss_pred cCCCCcCHHHHHHHHHHH
Q 023316 246 SATHNINVNKIFKFIMAK 263 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~ 263 (284)
||++|+|++++++||...
T Consensus 166 Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 166 SVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ecccCCChHHHHHHHHhh
Confidence 999999999999999765
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=1.8e-23 Score=170.32 Aligned_cols=155 Identities=15% Similarity=0.163 Sum_probs=108.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc---------ccccC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP---------IACKD 171 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~---------~~~~~ 171 (284)
+|+++|++|||||||+++|.+..+. ..++.+..+.....+.. ..+.+.+|||+|+........ .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999999998875 33332222222223322 346788999999853211000 01123
Q ss_pred CcEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 172 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 172 ad~iilv~d~~~~~s~--~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+|++|+|+|+++..++ +....|++.+.+...+.|.|+|+||+|+. .. .... +..++++..+.+++++||++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~----~~--~~~~-~~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL----TF--EDLS-EIEEEEELEGEEVLKISTLT 152 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC----ch--hhHH-HHHHhhhhccCceEEEEecc
Confidence 6899999999987654 66678888887655455668999999962 11 1111 24556666678999999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 023316 250 NINVNKIFKFIMAKLF 265 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~ 265 (284)
|.|++++|+++.+.++
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 153 EEGVDEVKNKACELLL 168 (168)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999998763
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=6.4e-24 Score=170.19 Aligned_cols=151 Identities=18% Similarity=0.327 Sum_probs=116.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
.|+++|++|||||||++++.+.++. ...+|++.++.. +..++ +.+.+||++|++.+..++..+++.+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3799999999999999999999988 666788877653 33443 779999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~----a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+++.+++.....|+..+.... ...|.++|+||+|+. .... ..+....+ ....+++++++||++|.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP----GALS--VDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc----CCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 999999988888877765432 234557999999962 1111 11111111 12234678999999999999
Q ss_pred HHHHHHHH
Q 023316 255 KIFKFIMA 262 (284)
Q Consensus 255 ~lf~~l~~ 262 (284)
++|+++++
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99999875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=1.7e-23 Score=170.77 Aligned_cols=155 Identities=14% Similarity=0.127 Sum_probs=112.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAV 173 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad 173 (284)
.|+++|.+|||||||++++.+.+.. ...+.++.+.....+.+++. ..+.+|||+|+.. +..+...++ ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999986654 33332223322233444443 4688999999743 233444444 4599
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023316 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT 248 (284)
Q Consensus 174 ~iilv~d~~~~-~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~ 248 (284)
++++|+|++++ ++++++..|++.+..... ..|.++|+||+|+. + .....+....+... .+.+++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL----D--EEELFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC----C--chhhHHHHHHHHhhCCCCCEEEEecC
Confidence 99999999999 899999999999987643 34558999999962 1 11223444455555 37889999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMAK 263 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~ 263 (284)
++.|++++|+++.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999865
No 132
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=1.7e-23 Score=172.36 Aligned_cols=153 Identities=13% Similarity=0.202 Sum_probs=114.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC-------CCCcc-c------ccceeeeeEEEEE-----CCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE-------QERSL-Q------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~-------~~~~~-~------t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~~~ 162 (284)
+|+++|+++||||||+++|++.. +...+ + +.|.++....+.+ ++..+.+.+|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 21111 1 2244555444333 6678889999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-- 240 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-- 240 (284)
.++..+++++|++|+|||+++..+++....|..... ...+.|+|+||+|+. ... ..+...++++.+++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~----~~~---~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLP----SAD---PERVKQQIEDVLGLDP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCC----cCC---HHHHHHHHHHHhCCCc
Confidence 999999999999999999999888777776754332 234558999999962 111 12334556666666
Q ss_pred -cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 241 -TLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 241 -~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
.++++||++|.|++++|+++...+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 489999999999999999998765
No 133
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=3.7e-24 Score=169.97 Aligned_cols=134 Identities=17% Similarity=0.137 Sum_probs=100.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc-----CCcccccccccCCcEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAIL 176 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e-----~~~~~~~~~~~~ad~ii 176 (284)
||+++|++|||||||+++|.+..+. ..+|.+.++. + .+|||+|+. .+..+.. .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999988763 2334444332 1 489999983 2444433 478999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.++.. ..|.+.+ ..|.|+|+||+||. + .....+++.++++..+. +++++||++|.|+++
T Consensus 68 lv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLA----E--ADVDIERAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred EEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccC----C--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 9999999998865 3555432 23558999999972 1 11234567777887776 799999999999999
Q ss_pred HHHHHH
Q 023316 256 IFKFIM 261 (284)
Q Consensus 256 lf~~l~ 261 (284)
+|+++.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 999874
No 134
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=3.8e-23 Score=170.46 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=123.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+||+++|..|+|||||++++..++.....||.|.+.. .+.+++ +.+.+||.+|++.++.+|+.|++++|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 4589999999999999999999998776677788887754 555565 557899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC-CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATH 249 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~ 249 (284)
|+|.++.+.+.+....+..+.... ....| ++++||.|+. +... .++...... ...+.++.|||.+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~----~~~~---~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP----DAMS---EEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST----TSST---HHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEecccccc----Ccch---hhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 999999999999888777776542 23345 6899999953 2211 222222211 2345688899999
Q ss_pred CcCHHHHHHHHHHHH
Q 023316 250 NINVNKIFKFIMAKL 264 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i 264 (284)
|+|+.+.|+||.+.|
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999875
No 135
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=4.7e-23 Score=161.57 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=132.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+++|.++|..|+||||++++|.+.......||.|.++ +++.+++ +++++||.+||...+..|+.||..+|++|+|
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~I--ktl~~~~--~~L~iwDvGGq~~lr~~W~nYfestdglIwv 90 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQI--KTLEYKG--YTLNIWDVGGQKTLRSYWKNYFESTDGLIWV 90 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceee--EEEEecc--eEEEEEEcCCcchhHHHHHHhhhccCeEEEE
Confidence 48999999999999999999999988666777888665 4666665 6688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+|.+|+..+++...-++.+..- -...+++|++||.|+...+..+. ....-+..+++++..++++.|||.+|+++.+-
T Consensus 91 vDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~-i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g 169 (185)
T KOG0073|consen 91 VDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE-ISKALDLEELAKSHHWRLVKCSAVTGEDLLEG 169 (185)
T ss_pred EECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH-HHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence 9999999998887766666442 22457789999999643332211 01134466777888999999999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
++|+...+..
T Consensus 170 idWL~~~l~~ 179 (185)
T KOG0073|consen 170 IDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHH
Confidence 9999998876
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.90 E-value=1.3e-22 Score=161.74 Aligned_cols=155 Identities=20% Similarity=0.250 Sum_probs=125.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|.+|+|||||++++.+..+. ...++++.++....+..++..+.+.+||++|++.+..++..+++.+++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999999999966 5566888888877788888778899999999999999999999999999999
Q ss_pred EeCCCh-hhHHHHH-HHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 179 FDLTSR-CTLNSIV-GWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~-~s~~~~~-~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|.... .++.... .|...+..... ..|.++++||+|+. .. .........+......+++++||++|.|+.+
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR---DA---KLKTHVAFLFAKLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC---cc---hhhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence 999888 7777765 78777776655 44558999999962 11 1223333344444466899999999999999
Q ss_pred HHHHH
Q 023316 256 IFKFI 260 (284)
Q Consensus 256 lf~~l 260 (284)
+|+++
T Consensus 155 ~~~~l 159 (161)
T TIGR00231 155 AFKIV 159 (161)
T ss_pred HHHHh
Confidence 99986
No 137
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=6.7e-23 Score=165.85 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=103.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC---CCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE---QER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~---~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
-|+++|++|||||||+++|++.. +.. ..++++.+.....+.+.+ ...+.+|||+|+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 58999999999999999999643 332 223444444444555542 3468899999999987766778899999999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH---cCCcEEEEcCCCCc
Q 023316 178 MFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---MKATLFFSSATHNI 251 (284)
Q Consensus 178 v~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~---~~~~~~~~Sa~~~~ 251 (284)
|+|+++ .++++.+. .+... ...|+|+++||+|+. .........++..++.+. .+.+++++||+++.
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV---DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc---CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 34433322 22222 223558999999962 111111223344444444 46799999999999
Q ss_pred CHHHHHHHHHH
Q 023316 252 NVNKIFKFIMA 262 (284)
Q Consensus 252 ~v~~lf~~l~~ 262 (284)
|++++|+.+..
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998754
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=5.9e-23 Score=168.22 Aligned_cols=149 Identities=16% Similarity=0.226 Sum_probs=114.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||++++.+..+....+|.|.++. .+..++ ..+.+||++|+..+...+..+++.+|++++|+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 89 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYVI 89 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999999999877655567775543 444555 56789999999998888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCCC
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSATH 249 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--------~~~~~Sa~~ 249 (284)
|+++..++.....|+..+.+.. ...|.++++||+|+. ... . ..++.+..++ +++++||++
T Consensus 90 D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~~~--~----~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 90 DSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA----TAA--P----AEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred eCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc----cCC--C----HHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 9999999988887777665432 234447999999962 111 1 1222233332 467899999
Q ss_pred CcCHHHHHHHHHH
Q 023316 250 NINVNKIFKFIMA 262 (284)
Q Consensus 250 ~~~v~~lf~~l~~ 262 (284)
|+|++++|+|+++
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999875
No 139
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1e-22 Score=187.86 Aligned_cols=203 Identities=13% Similarity=0.150 Sum_probs=142.2
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCChHHHHH
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFVV 118 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~KI~llG~~~vGKSsLl~ 118 (284)
.+++++|.+|.+|.++.+..++.... |..+..|.... ...-..+ ..|+|+|.+|||||||++
T Consensus 111 ~~~~~va~GG~gG~gn~~F~~s~~~~-----p~~~~~G~~ge---------~~~~~lelk~~adVglVG~pNaGKSTLLn 176 (424)
T PRK12297 111 GQEVVVAKGGRGGRGNAHFATSTNQA-----PRIAENGEPGE---------ERELRLELKLLADVGLVGFPNVGKSTLLS 176 (424)
T ss_pred CcEEEEECCCCCCcCchhhcCCCCCC-----CCcCCCCCCCe---------EeEEEEeecccCcEEEEcCCCCCHHHHHH
Confidence 67889999999999886655444332 23333332221 1111112 358899999999999999
Q ss_pred HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCcEEEEEEeCCCh---hhH
Q 023316 119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CTL 187 (284)
Q Consensus 119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad~iilv~d~~~~---~s~ 187 (284)
++++.+.. ..++.++.+.....+.+++ ...+.+||++|... ...+...|+ ..++++|+|+|+++. +++
T Consensus 177 ~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~ 255 (424)
T PRK12297 177 VVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPI 255 (424)
T ss_pred HHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChH
Confidence 99998766 5666333333333444441 24578999999753 234555554 459999999999864 788
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+++..|.+++..+.+ ..|.|||+||+|| +.. .+....+++.++.+++++||++++|++++++++...+
T Consensus 256 e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL----~~~-----~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 256 EDYEKINKELKLYNPRLLERPQIVVANKMDL----PEA-----EENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred HHHHHHHHHHhhhchhccCCcEEEEEeCCCC----cCC-----HHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888999999988754 3455899999996 211 2345666777778899999999999999999999888
Q ss_pred hCCcc
Q 023316 265 FNLPW 269 (284)
Q Consensus 265 ~~~~~ 269 (284)
.+.+.
T Consensus 327 ~~~~~ 331 (424)
T PRK12297 327 EETPE 331 (424)
T ss_pred HhCcc
Confidence 76554
No 140
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.3e-22 Score=191.53 Aligned_cols=254 Identities=15% Similarity=0.113 Sum_probs=159.7
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++.+++..++.+|.+.+......-+.+.++...-.++++-++...... +..+... .+-+...
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~-----~~~~iSA 181 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLG-----EPHPVSA 181 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCC-----CeEEEEc
Confidence 4455666778888899999999887666666666776655566666664432111 1111110 0001111
Q ss_pred ccc--cccc----ccccCC-CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEE
Q 023316 78 EAG--LVEL----SRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARI 148 (284)
Q Consensus 78 ~~~--~~~~----~~~~~~-~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~ 148 (284)
..| .... ...... ..........+||+++|.+|||||||+++|++.++. ...++++.+.....+.+++..+
T Consensus 182 ~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~ 261 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTW 261 (472)
T ss_pred CCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEE
Confidence 111 0000 000000 001111123589999999999999999999998764 6667777888778888888664
Q ss_pred EEEEEeCCCCcCC----------cccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC
Q 023316 149 AFSIWDVGGDSRS----------FDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217 (284)
Q Consensus 149 ~l~l~Dt~G~e~~----------~~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~ 217 (284)
.+|||+|..+. ..+. ..+++++|++|+|||+++..+++++. |+..+.. ...+.|+|+||+||.
T Consensus 262 --~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~- 335 (472)
T PRK03003 262 --RFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV- 335 (472)
T ss_pred --EEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC-
Confidence 69999997432 2221 23578999999999999999888764 4454443 244558999999972
Q ss_pred CCCCCcccchHHHHH-HHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316 218 RLPPDLQWTIATQAR-AYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 218 ~~~~~~~~~~~~~~~-~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~ 270 (284)
.........++.. .++....++++++||++|.||+++|+.+.+.+.+....
T Consensus 336 --~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~~ 387 (472)
T PRK03003 336 --DEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWDTR 387 (472)
T ss_pred --ChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccc
Confidence 2121112222222 23333457899999999999999999999877544433
No 141
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.4e-23 Score=164.36 Aligned_cols=163 Identities=17% Similarity=0.203 Sum_probs=129.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+.+|+++|-.++||||+++++..+++....||+|.+.. ++.+. ++.|.+||.+||++++.+|++||++.+++|
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE--~v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVE--TVEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCCCcccccee--EEEEc--ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 34589999999999999999999999999877999998765 44444 578999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHH--HHHcCCcEEEEcCCCCcC
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY--AKAMKATLFFSSATHNIN 252 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~Sa~~~~~ 252 (284)
+|.|.+|++-+.+.++-+..+..... ...| ++.+||.|+.+.++.. ...+...+ .+.....+..|+|.+|+|
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~----ei~~~L~l~~l~~~~w~iq~~~a~~G~G 165 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAA----EITNKLGLHSLRSRNWHIQSTCAISGEG 165 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHH----HHHhHhhhhccCCCCcEEeecccccccc
Confidence 99999999999998877777666543 3444 6899999965444421 11111111 222345677799999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023316 253 VNKIFKFIMAKLFNL 267 (284)
Q Consensus 253 v~~lf~~l~~~i~~~ 267 (284)
+.|.++|+...+...
T Consensus 166 L~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 166 LYEGLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 142
>PRK15494 era GTPase Era; Provisional
Probab=99.89 E-value=1.5e-21 Score=176.67 Aligned_cols=169 Identities=16% Similarity=0.271 Sum_probs=124.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-Cccccc-------c
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I 167 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~-------~ 167 (284)
...+||+++|++|||||||+|+|++.++. ...+.++.+.....+..++. .+.+|||+|+.. +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45689999999999999999999998875 23333334555556666665 468999999954 333322 2
Q ss_pred cccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF 244 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~ 244 (284)
++.++|++|+|+|..+ +|.+.. .|++.+... ..++|+|+||+|+. .. ...++.+++...+ ..+++
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~----~~----~~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIE----SK----YLNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCc----cc----cHHHHHHHHHhcCCCcEEEE
Confidence 4679999999999654 455554 466666543 35678999999962 11 1334555555443 57999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316 245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 280 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 280 (284)
+||++|.|++++|+++...+...+|.......++.|
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~ 231 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLP 231 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999998888777665
No 143
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.7e-23 Score=163.72 Aligned_cols=165 Identities=22% Similarity=0.337 Sum_probs=142.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+|++++|+.|.|||+++++....+|+ ...+|+|++...-...-+...+.|..|||+|+|.+..+..-||-.+.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 34799999999999999999999999999 55569999988766655555799999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
++||++.+-++.++..|...+.+.+.+.|++++|||.|. . .+.+....-.+-+..++.|+++||+++.|.+.-
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi----~---~r~~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI----K---ARKVKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec----c---ccccccccceeeecccceeEEeecccccccccc
Confidence 999999999999999999999998888777899999993 2 112234445566677899999999999999999
Q ss_pred HHHHHHHHhCCcc
Q 023316 257 FKFIMAKLFNLPW 269 (284)
Q Consensus 257 f~~l~~~i~~~~~ 269 (284)
|.|+++.+...+.
T Consensus 161 Fl~LarKl~G~p~ 173 (216)
T KOG0096|consen 161 FLWLARKLTGDPS 173 (216)
T ss_pred hHHHhhhhcCCCC
Confidence 9999999987663
No 144
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=7.5e-22 Score=184.45 Aligned_cols=208 Identities=14% Similarity=0.084 Sum_probs=140.7
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhc
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+++++|.+|.+|.++.+..++... +|.....|........... =....+|+|||.||||||||++++.+
T Consensus 112 g~~~~~a~GG~GG~Gn~~f~~~~~~-----~p~~~~~G~~Ge~~~~~le-----Lk~~adV~LVG~PNAGKSTLln~Ls~ 181 (500)
T PRK12296 112 GTRFVAAAGGRGGLGNAALASKARK-----APGFALLGEPGEERDLVLE-----LKSVADVGLVGFPSAGKSSLISALSA 181 (500)
T ss_pred CCEEEEEccCCCcCCCcccCCccCC-----CCccccCCCCCceEEEEEE-----ecccceEEEEEcCCCCHHHHHHHHhc
Confidence 6788999999999998665554443 2333333332211110000 00124688999999999999999998
Q ss_pred CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccc---cccCCcEEEEEEeCCC----hhhHHHH
Q 023316 123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI---ACKDAVAILFMFDLTS----RCTLNSI 190 (284)
Q Consensus 123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~---~~~~ad~iilv~d~~~----~~s~~~~ 190 (284)
.+.. ..++.++.+.....+.+.+ ..|.+|||+|.... ..+... ++..++++|+|+|+++ ++.++++
T Consensus 182 akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~ 259 (500)
T PRK12296 182 AKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDI 259 (500)
T ss_pred CCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhH
Confidence 8766 6677444555555666665 46889999997432 222222 3568999999999985 4567777
Q ss_pred HHHHHHHHhHCC------------CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 191 VGWYSEARKWNQ------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 191 ~~~~~~l~~~~~------------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
..|..+|..+.. ..|.|||+||+|+ ++. ....+.........+++++++||++++|+++++.
T Consensus 260 ~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL----~da--~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~ 333 (500)
T PRK12296 260 DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV----PDA--RELAEFVRPELEARGWPVFEVSAASREGLRELSF 333 (500)
T ss_pred HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc----hhh--HHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 778777776642 3455899999996 222 1122233333445688999999999999999999
Q ss_pred HHHHHHhCCc
Q 023316 259 FIMAKLFNLP 268 (284)
Q Consensus 259 ~l~~~i~~~~ 268 (284)
++...+...+
T Consensus 334 ~L~ell~~~r 343 (500)
T PRK12296 334 ALAELVEEAR 343 (500)
T ss_pred HHHHHHHhhh
Confidence 9998886544
No 145
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=7.2e-22 Score=181.24 Aligned_cols=217 Identities=16% Similarity=0.142 Sum_probs=147.0
Q ss_pred HHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHH
Q 023316 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV 117 (284)
Q Consensus 42 ~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl 117 (284)
-.+++++|.+|.+|.++.+..++... .|..+..|.... ...-..++ .|+|+|.||||||||+
T Consensus 111 ~~~~~~~a~GG~gG~gn~~f~~~~~~-----~p~~~~~g~~g~---------~~~~~lelk~iadValVG~PNaGKSTLl 176 (390)
T PRK12298 111 HGQRLLVAKGGWHGLGNTRFKSSVNR-----APRQKTPGTPGE---------ERELKLELKLLADVGLLGLPNAGKSTFI 176 (390)
T ss_pred CCcEEEEecCCCCccchhhhccCccC-----CCcccCCCCCCc---------eEEEEEeeeccccEEEEcCCCCCHHHHH
Confidence 36788999999999988665444332 223333332221 11111122 4889999999999999
Q ss_pred HHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc----cccc---cccCCcEEEEEEeCC---Chhh
Q 023316 118 VKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----HVPI---ACKDAVAILFMFDLT---SRCT 186 (284)
Q Consensus 118 ~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~----~~~~---~~~~ad~iilv~d~~---~~~s 186 (284)
|++++.+.. ..++.++.......+.+++ ...+.++||+|..+-.. +... ++..++++++|+|++ +.++
T Consensus 177 n~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~ 255 (390)
T PRK12298 177 RAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP 255 (390)
T ss_pred HHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh
Confidence 999988765 6666444444444555543 23477999999864221 2222 467899999999998 5677
Q ss_pred HHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023316 187 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 187 ~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
++++..|++++..+.. ..|.|+|+||+|+. . .....+...++.+..+ .+++.+||+++.|++++++.+.
T Consensus 256 ~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~----~--~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~ 329 (390)
T PRK12298 256 VENARIIINELEKYSPKLAEKPRWLVFNKIDLL----D--EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM 329 (390)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC----C--hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 8888899999887753 45668999999962 1 1122344555655544 4789999999999999999999
Q ss_pred HHHhCCccccccccCCCC
Q 023316 262 AKLFNLPWTVKRNLTIGE 279 (284)
Q Consensus 262 ~~i~~~~~~~~~~~~~~~ 279 (284)
..+...++..+....++.
T Consensus 330 ~~L~~~~~~~~~~~~td~ 347 (390)
T PRK12298 330 TFIEENPREEAEEAEAPE 347 (390)
T ss_pred HHhhhCcccCCcccccCc
Confidence 999877776555444443
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=3.1e-22 Score=168.76 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=110.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--ccc------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--~~~------~~~~ 170 (284)
.++|+|+|++|||||||++++++.++. ...+..+.+.....+.+++. ..+.+|||+|...... +.. ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999999998754 33332333333444555443 2578999999843211 111 1357
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
.+|++++|+|++++.++.....|.+.+....... |+++|+||+|+. +.. . ...++...+.+++++||++
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~---~~~---~----~~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL---DDE---E----LEERLEAGRPDAVFISAKT 189 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC---ChH---H----HHHHhhcCCCceEEEEcCC
Confidence 8999999999999999988888888777655433 558999999962 111 1 1134455677899999999
Q ss_pred CcCHHHHHHHHHHHH
Q 023316 250 NINVNKIFKFIMAKL 264 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i 264 (284)
+.|++++|+++...+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999988653
No 147
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=4.4e-22 Score=180.44 Aligned_cols=261 Identities=14% Similarity=0.110 Sum_probs=177.2
Q ss_pred hhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc--c----ccccccCCCCCCCCCcc
Q 023316 2 AKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV--R----YQKLTRRSSSESSPAPD 75 (284)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~--~----~~~~~~~~~~~~~~~~~ 75 (284)
+.|..|+..||.+++..+|.||.|.++..-+.-+.+.+|+.+.+++++-++..+.. . |..++...+-.-|+.+.
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhc
Confidence 35889999999999999999999999999999999999988889988888665431 1 44455444432233333
Q ss_pred ccccccccc-cccc-CCCCCCC-CCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEE
Q 023316 76 TMEAGLVEL-SRTF-SSGYDTD-SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAF 150 (284)
Q Consensus 76 ~~~~~~~~~-~~~~-~~~~~~~-~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l 150 (284)
......-.. .... ....... .....+||+++|.||||||||+|++++.+.. +..+.++.|.....+.++++.+
T Consensus 151 ~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~-- 228 (444)
T COG1160 151 RGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKY-- 228 (444)
T ss_pred cCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEE--
Confidence 322221111 0111 1110111 1124799999999999999999999999877 7788888888888888899875
Q ss_pred EEEeCCCCcCCccccc-----------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316 151 SIWDVGGDSRSFDHVP-----------IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219 (284)
Q Consensus 151 ~l~Dt~G~e~~~~~~~-----------~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~ 219 (284)
.+.||+|..+-..+.. ..+..+|.+++|.|.+.+-+-++.+ ....+.+ .....|+|.||||+.+.
T Consensus 229 ~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~- 304 (444)
T COG1160 229 VLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEE- 304 (444)
T ss_pred EEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCc-
Confidence 4899999877443332 2456899999999999877655533 2222222 24455899999997321
Q ss_pred CCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 220 PPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
+........++.+..... ..++.+.+||+++.+++++|+.+........
T Consensus 305 ~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~ 354 (444)
T COG1160 305 DEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT 354 (444)
T ss_pred hhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc
Confidence 001111112333332222 2468999999999999999999887665443
No 148
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=1.1e-21 Score=157.76 Aligned_cols=147 Identities=13% Similarity=0.073 Sum_probs=111.7
Q ss_pred EEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------cccccc--CCcEE
Q 023316 105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI 175 (284)
Q Consensus 105 llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~~--~ad~i 175 (284)
|+|.+|||||||++++.+..+. ..+++++.+.....+.+++. .+.+|||+|++.+... ...++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK--EIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe--EEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999998755 66677777777777777764 5789999999887653 555664 99999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|+|+|.++.+.. ..|...+.+. ..|.|+|+||+|+. ... ........+++.++++++++||.++.|+++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~----~~~--~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEA----EKR--GIKIDLDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhc----ccc--cchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence 999999876543 2444444432 34558999999962 111 122334567777889999999999999999
Q ss_pred HHHHHHHHH
Q 023316 256 IFKFIMAKL 264 (284)
Q Consensus 256 lf~~l~~~i 264 (284)
+|+++...+
T Consensus 148 l~~~l~~~~ 156 (158)
T cd01879 148 LKDAIAELA 156 (158)
T ss_pred HHHHHHHHh
Confidence 999998764
No 149
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=1.5e-21 Score=182.52 Aligned_cols=257 Identities=15% Similarity=0.128 Sum_probs=157.3
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++.++...++.+|.+.++.....-+.+.+|.....++++-++...... +.++.....-.-|+.....
T Consensus 68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCC
Confidence 4456667778888889999999988887777778888776667776664332111 1111111000001111110
Q ss_pred ccccc-ccccccCC-CCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEE
Q 023316 78 EAGLV-ELSRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIW 153 (284)
Q Consensus 78 ~~~~~-~~~~~~~~-~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~ 153 (284)
....- ........ ..........+||+++|.+|+|||||++++++.+.. ...++++.+.....+..++. .+.+|
T Consensus 148 v~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~li 225 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLI 225 (429)
T ss_pred hHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEE
Confidence 00000 00000000 001111234589999999999999999999988744 55566666666566666665 46799
Q ss_pred eCCCCcCCcccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 154 DVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 154 Dt~G~e~~~~~~-----------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
||+|..++.... ..+++.+|++|+|+|++++.+.++.. ++..+.+. ..+.|+|+||+||.. +..
T Consensus 226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~~--~~~iiiv~NK~Dl~~--~~~ 300 (429)
T TIGR03594 226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILEA--GKALVIVVNKWDLVK--DEK 300 (429)
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHHc--CCcEEEEEECcccCC--CHH
Confidence 999987765432 23678999999999999988877654 33444332 345589999999720 111
Q ss_pred cccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 223 LQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 223 ~~~~~~~~~~~-~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
......++... +....+++++++||++|.|++++|+++.......
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 301 TREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred HHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 11111122221 1112257999999999999999999998876543
No 150
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=4.2e-21 Score=168.91 Aligned_cols=167 Identities=16% Similarity=0.116 Sum_probs=118.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-cc-------ccccccC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACKD 171 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~-------~~~~~~~ 171 (284)
+|+++|.+|||||||+|+|++.++. +..+.++.+........++ ..+.+|||+|..... .+ ...++.+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998865 4444333333222222233 457899999986532 11 2346789
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN 250 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~ 250 (284)
+|++++|+|+++..+.+ ..+++.+... ..|.++|+||+|+. . .....+....++...+. +++++||++|
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~~--~~p~ilV~NK~Dl~----~--~~~~~~~~~~~~~~~~~~~v~~iSA~~g 149 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQNL--KRPVVLTRNKLDNK----F--KDKLLPLIDKYAILEDFKDIVPISALTG 149 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHhc--CCCEEEEEECeeCC----C--HHHHHHHHHHHHhhcCCCceEEEecCCC
Confidence 99999999999877764 4455555432 34558999999962 1 12223445555555554 7899999999
Q ss_pred cCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316 251 INVNKIFKFIMAKLFNLPWTVKRNLTIGEP 280 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 280 (284)
.|++++++++...+...+|.......++.|
T Consensus 150 ~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 150 DNTSFLAAFIEVHLPEGPFRYPEDYVTDQP 179 (270)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence 999999999999999999887777655544
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.3e-21 Score=150.68 Aligned_cols=113 Identities=28% Similarity=0.530 Sum_probs=91.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC---CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
||+|+|++|||||||+++|++.++. ...++.+.++......+.+....+++||++|++.+...+..++..+|++|+|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999999876 2223445555555667777777799999999999888888889999999999
Q ss_pred EeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEeCCC
Q 023316 179 FDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 179 ~d~~~~~s~~~~~---~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
||+++++||+.+. .|+..+..+..+.|.||||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999974 56777777666655589999998
No 152
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=1.9e-21 Score=162.75 Aligned_cols=148 Identities=14% Similarity=0.129 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc--CCCCCcc-------------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 165 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~ 165 (284)
-+|+++|+++||||||+++|+. +.+...+ .+.|.++..+...++...+.+.+|||+|+++|...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999997 4454221 235566665655666667889999999999999999
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------Hc
Q 023316 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AM 238 (284)
Q Consensus 166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~ 238 (284)
..+++.+|++++|||+++.. +.....|+..+.. ...|+++|+||+|+. ........++..++.. ..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRP----DARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCC----CCCHHHHHHHHHHHHHHhCCccccC
Confidence 99999999999999998742 3333445554433 244568999999962 2222223445555542 23
Q ss_pred CCcEEEEcCCCCcCHHH
Q 023316 239 KATLFFSSATHNINVNK 255 (284)
Q Consensus 239 ~~~~~~~Sa~~~~~v~~ 255 (284)
+++++++||++|.|+.+
T Consensus 156 ~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 156 DFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCEEEeehhccccccc
Confidence 67899999999988643
No 153
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=7.1e-21 Score=154.78 Aligned_cols=157 Identities=10% Similarity=0.019 Sum_probs=106.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.|+++|++|+|||||+++|.+.++.. ..+++..++....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999988773 23333433333334333 23567889999999999888888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCCcCH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHNINV 253 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~------~~~~~~~~~Sa~~~~~v 253 (284)
|+++....+... .+..+.. ...|+++|+||+|+. .............+.. ...++++++||++|+|+
T Consensus 82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKP----NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecc----cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 998854322222 1222322 244668999999962 1111111122222211 12368999999999999
Q ss_pred HHHHHHHHHHHh
Q 023316 254 NKIFKFIMAKLF 265 (284)
Q Consensus 254 ~~lf~~l~~~i~ 265 (284)
+++|+++.....
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
No 154
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.86 E-value=3.4e-23 Score=165.50 Aligned_cols=168 Identities=21% Similarity=0.322 Sum_probs=139.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe-EEEEEEEeCCCCcCCcccccccccCCcE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ 174 (284)
....+|+.|+|+-|+||||++.+|+...|. .+..|+|.++..+.+..++. .+.+++||++||++|..+...||+.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 345789999999999999999999999998 55669999998888877654 4678999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCC----CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQ----TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT 248 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~~----~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~ 248 (284)
..+|||+++.-+|+.+..|.+++..... ...| |+.+||||. ..............+++++|+ ..+++|++
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~----e~~a~~~~~~~~d~f~kengf~gwtets~K 177 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ----EKSAKNEATRQFDNFKKENGFEGWTETSAK 177 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc----ChHhhhhhHHHHHHHHhccCccceeeeccc
Confidence 9999999999999999999999876532 2233 689999995 111111113556677888886 68999999
Q ss_pred CCcCHHHHHHHHHHHHhCCc
Q 023316 249 HNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~~ 268 (284)
.+.|++|+-..++..++-+.
T Consensus 178 enkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 178 ENKNIPEAQRELVEKILVND 197 (229)
T ss_pred cccChhHHHHHHHHHHHhhc
Confidence 99999999999999887554
No 155
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.86 E-value=1.3e-20 Score=148.56 Aligned_cols=153 Identities=25% Similarity=0.407 Sum_probs=118.3
Q ss_pred EEcCCCCChHHHHHHHhcCCC-CCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC
Q 023316 105 LLGDCQIGKTSFVVKYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (284)
Q Consensus 105 llG~~~vGKSsLl~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~ 183 (284)
++|.+|+|||||++++.+... .....++..++........+....+.+||++|+..+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999887 4444444478887777777778899999999999988888888999999999999999
Q ss_pred hhhHHHHHHHHH--HHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316 184 RCTLNSIVGWYS--EARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 184 ~~s~~~~~~~~~--~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
..+++....|.. .........+.++++||+|+. ... ...............+++++++|+.++.|++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLP---EER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc---ccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 999999888732 222233444558999999962 111 11111114455566678999999999999999999975
No 156
>PRK04213 GTP-binding protein; Provisional
Probab=99.86 E-value=9.4e-22 Score=165.35 Aligned_cols=149 Identities=17% Similarity=0.213 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC-----------CcCCcccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPI 167 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G-----------~e~~~~~~~~ 167 (284)
.+||+++|.+|||||||++++.+..+. ...++++ +....+.+. .+.+|||+| +++++.++..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 579999999999999999999998876 4444443 333344333 478999999 4566666666
Q ss_pred ccc----CCcEEEEEEeCCChhhHHHHHHH------------HHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHH
Q 023316 168 ACK----DAVAILFMFDLTSRCTLNSIVGW------------YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA 231 (284)
Q Consensus 168 ~~~----~ad~iilv~d~~~~~s~~~~~~~------------~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~ 231 (284)
|+. .++++++|+|.++...+ ...| +..+.. ...|+++|+||+|+. ... .+..
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~----~~~----~~~~ 150 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEI--IERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI----KNR----DEVL 150 (201)
T ss_pred HHHhhhhhheEEEEEEeCcccccc--ccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc----CcH----HHHH
Confidence 664 34677777776543211 0122 222222 245668999999962 111 2345
Q ss_pred HHHHHHcCC---------cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 232 RAYAKAMKA---------TLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 232 ~~~a~~~~~---------~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.++++.+++ +++++||++| |++++|++|...+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 556666654 4799999999 9999999999886443
No 157
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=5.3e-21 Score=173.58 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC---------Ccccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~---------~~~~~~~~~ 169 (284)
.++|+++|.+|||||||+|+|++.++. .+.+.++.+...+.+.+++. ..+.+|||+|..+ |.... ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999999998754 45554456666777777432 3578999999832 22211 247
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
.++|++|+|+|++++.+++.+..|.+.+..... +.|.|+|+||+|+. + . . +...+. ....+++++||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~---~-~--~----~v~~~~-~~~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL---D-E--P----RIERLE-EGYPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC---C-h--H----hHHHHH-hCCCCEEEEEcc
Confidence 899999999999999988888777776666543 34558999999962 1 1 1 111111 123468999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMAK 263 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~ 263 (284)
+|.|++++++++...
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.3e-20 Score=175.73 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=119.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~ 169 (284)
.+||+++|++|||||||+|+|++.... ..+++++.++....+.++|.. +.+|||+|+..+... ...++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 589999999999999999999987643 677877888888888888755 579999999775543 23578
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+++|++++|||++++.++++. |+..+.. ...|.|+|+||+|+. .. +...+++..+.+++++||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~----~~-------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK----IN-------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC----Cc-------chhhhhhhcCCceEEEEEec
Confidence 999999999999999888775 7776643 234558999999962 11 12345667788999999997
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
.||+++|+.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999887653
No 159
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=2e-20 Score=153.12 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=106.7
Q ss_pred EEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcC----Cccccc---ccccCCcEE
Q 023316 105 LLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSR----SFDHVP---IACKDAVAI 175 (284)
Q Consensus 105 llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~----~~~~~~---~~~~~ad~i 175 (284)
++|++|||||||++++.+.++. ..++.+..+.....+.++ + ..+.+|||+|... ...+.. .+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999998753 444433333333445555 4 4478999999743 223332 346789999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHhHCC--------CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316 176 LFMFDLTSR------CTLNSIVGWYSEARKWNQ--------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 241 (284)
Q Consensus 176 ilv~d~~~~------~s~~~~~~~~~~l~~~~~--------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 241 (284)
++|+|+++. .+++++..|...+..... ..|.++|+||+|+. .... .............+.+
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~----~~~~-~~~~~~~~~~~~~~~~ 153 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD----DAEE-LEEELVRELALEEGAE 153 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC----chhH-HHHHHHHHHhcCCCCC
Confidence 999999988 578888888888876532 34558999999962 1111 1111123444455678
Q ss_pred EEEEcCCCCcCHHHHHHHHHHH
Q 023316 242 LFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 242 ~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++++||+++.|++++++++...
T Consensus 154 ~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 154 VVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEEehhhhcCHHHHHHHHHhh
Confidence 9999999999999999998764
No 160
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.7e-20 Score=177.22 Aligned_cols=153 Identities=22% Similarity=0.272 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--------Ccccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--------~~~~~~~~~ 169 (284)
..+|+|+|.+|||||||+|+|++.... ...++++.+.....+.+++.. +.+|||+|++. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999999998754 455566666666666677654 67999999874 223345678
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+.+|++|+|||+++..++.. ..|.+.++. ...|.|+|+||+|+. .. ..+....+...++ ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~----~~----~~~~~~~~~~g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDE----RG----EADAAALWSLGLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCC----cc----chhhHHHHhcCCC-CeEEEEcCC
Confidence 99999999999999877643 344444443 245668999999962 11 1112222322233 357899999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.|++++|++++..+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999998855
No 161
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=1.6e-21 Score=150.18 Aligned_cols=160 Identities=19% Similarity=0.290 Sum_probs=122.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
.++.+.++|..++|||||+|....+.+. .-.||.|.+.. .+....+++.+||.+||.+|+++|..|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3688999999999999999999988888 56778897754 344566889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|.|..+++.++..+.-+..+... .-.++| +++|||.|+..++... ..+++.+..-.....+-.|.+|+++..|++-
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 99999999887776555555443 335666 6899999964444431 1111111222222345678899999999999
Q ss_pred HHHHHHHHH
Q 023316 256 IFKFIMAKL 264 (284)
Q Consensus 256 lf~~l~~~i 264 (284)
+.+|+++..
T Consensus 173 ~~~Wli~hs 181 (186)
T KOG0075|consen 173 TLDWLIEHS 181 (186)
T ss_pred HHHHHHHHh
Confidence 999998765
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=6.4e-20 Score=147.01 Aligned_cols=145 Identities=16% Similarity=0.235 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------cccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK 170 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~~ 170 (284)
+||+++|++|+|||||++++.+.... ...+++..++....+..++ ..+.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999988754 4455666666655666655 45789999998775432 224677
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 250 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~ 250 (284)
.+|++++|+|++++.+..+...|.. ....++++|+||+|+. +.. .. .....+.+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~---~~~-~~--------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLL---PDS-EL--------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcC---Ccc-cc--------ccccCCCceEEEECCCC
Confidence 9999999999999888877655433 3345668999999962 111 11 33445678999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++++++...+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988754
No 163
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-19 Score=140.80 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=132.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCC-cccccccccCCcEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVAI 175 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~-~~~~~~~~~~ad~i 175 (284)
..||+++|..+||||+++.+++..+.. ..+.++-.|++...+.- +|..-.+.++||+|...+ ..+-++|+.-+|++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 579999999999999999999766644 33445555666666654 466667899999999888 67888999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
++|||..|++||+.+..+..+|.+... ..+| +++|||+|+. +...+..+.+..||+.-.+..++++|.+...+
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-----~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-----EPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-----cchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 999999999999998866666666543 3344 6899999962 22344578899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023316 254 NKIFKFIMAKLFNLP 268 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~ 268 (284)
-|-|..+...+.+..
T Consensus 164 ~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQ 178 (198)
T ss_pred hhHHHHHHHhccCCc
Confidence 999999999887654
No 164
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=4.3e-20 Score=141.30 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=122.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
+++|+++|-.++||||++.+++.+......||+|.++. ++.+ +++.|.+||.+|+++.+.+|++||....++|||.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 79999999999999999999999988888899998765 4444 4577999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHH--HHHcCCcEEEEcCCCCcCHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAY--AKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|..+++..++.+.-+..+... .-...+ ++.+||.|+. .........+..++ ++...+-...+||.+|+++.|
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp----~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~e 168 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLP----DAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKE 168 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccc----cccCHHHHHHHhccccccCCccEeeccccccchhHHH
Confidence 999998888887555555433 223344 6889999963 33322222222222 233345566799999999999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
-|.|+++.+.
T Consensus 169 glswlsnn~~ 178 (180)
T KOG0071|consen 169 GLSWLSNNLK 178 (180)
T ss_pred HHHHHHhhcc
Confidence 9999987653
No 165
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=2.8e-20 Score=150.85 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=98.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc----cccccCCcEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF 177 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~----~~~~~~ad~iil 177 (284)
||+++|.+|+|||||++++.+.. .....+.+.+ +.+. .+|||+|+......+ ...++.+|++|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-TLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-ccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987653 2112232322 2222 269999984322111 123689999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC--cEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--TLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~Sa~~~~~v~~ 255 (284)
|+|+++.+++ +..|+..+ ....|.++++||+|+ +.. ..+...+++++.++ +++++||++|+|+++
T Consensus 71 v~d~~~~~s~--~~~~~~~~---~~~~~ii~v~nK~Dl----~~~----~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 71 VHGANDPESR--LPAGLLDI---GVSKRQIAVISKTDM----PDA----DVAATRKLLLETGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred EEeCCCcccc--cCHHHHhc---cCCCCeEEEEEcccc----Ccc----cHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence 9999988876 33565543 223455899999996 221 23456677777775 899999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+.+.+.+.+
T Consensus 138 l~~~l~~~~~~ 148 (158)
T PRK15467 138 LVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHhchh
Confidence 99999877643
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=6.5e-20 Score=171.76 Aligned_cols=147 Identities=17% Similarity=0.212 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc--------ccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~--------~~~~~ 169 (284)
.+||+++|.+|+|||||+|+|++.+.. ...+.++.++....+.++|.. +.+|||+|.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999999998753 666777778877888887754 679999999875542 22368
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+++|++++|||++++.++++...|.. ....|.++|+||+|+. +... .. ...+.+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~----~~~~--~~-------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT----GEID--LE-------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc----ccch--hh-------hccCCceEEEEeeC
Confidence 89999999999999988887655543 3345568999999962 1111 01 33467899999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.|++++++++...+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 167
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=5.9e-20 Score=153.50 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC----CCC----Cccc--ccceeeeeEEEE----------ECCeEEEEEEEeCCCCcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN----EQE----RSLQ--MAGLNLINKTLM----------VQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~----~~~----~~~~--t~~~~~~~~~~~----------~~~~~~~l~l~Dt~G~e~ 160 (284)
++|+++|++++|||||+++|++. .+. +..+ |.+..+....+. ..+....+.+|||+|+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999872 121 1112 334343333332 123467789999999976
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH-HHH---
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-YAK--- 236 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~a~--- 236 (284)
+..........+|++++|+|+++..+......|.. . ... ..++++++||+|+. .........++..+ +.+
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~~-~~~~iiv~NK~Dl~---~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EIL-CKKLIVVLNKIDLI---PEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HHc-CCCEEEEEECcccC---CHHHHHHHHHHHHHHHHHHHH
Confidence 43333233567899999999988655444333321 1 112 34558999999962 11111111222222 111
Q ss_pred ---HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 237 ---AMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 237 ---~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
..+++++++||++|.|++++++++..+|..
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 236789999999999999999999988753
No 168
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.83 E-value=1.1e-19 Score=150.40 Aligned_cols=155 Identities=13% Similarity=0.084 Sum_probs=109.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccc-----------------ccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ-----------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
+|+++|.+|+|||||++.+++........ ++..+.....+... ...+.+|||+|+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 48999999999999999999887663221 11222222223333 456889999999998888
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------- 237 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~------- 237 (284)
+..+++.+|++++|+|+++..+... ..++..+.. ...++++|+||+|+. .++......+..++..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRV---GEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCc---chhcHHHHHHHHHHHHccccccchh
Confidence 8889999999999999988765443 344444443 345668999999973 222212223334444333
Q ss_pred -------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 238 -------MKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 238 -------~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
...+++++||++|.|++++|.++.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 357889999999999999999999886
No 169
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.83 E-value=1.5e-19 Score=145.05 Aligned_cols=145 Identities=19% Similarity=0.203 Sum_probs=101.6
Q ss_pred EEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------cccccccCCc
Q 023316 104 SLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV 173 (284)
Q Consensus 104 ~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~~~~ad 173 (284)
+++|.+|+|||||++++.+.... ...+.++.+........++ ..+.+|||+|...+.. ....+++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999999987633 4445555555555555555 4578999999988654 2345678999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023316 174 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNIN 252 (284)
Q Consensus 174 ~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~ 252 (284)
++++|+|..+..+.... .+.+.+.+. ..|.++|+||+|+. +.. .. .......+. +++++||++|.|
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~----~~~-----~~-~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNI----KEE-----DE-AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccC----ChH-----HH-HHHHHhcCCCCeEEEecccCCC
Confidence 99999999876554432 222223222 34558999999962 111 11 222334565 789999999999
Q ss_pred HHHHHHHHHHH
Q 023316 253 VNKIFKFIMAK 263 (284)
Q Consensus 253 v~~lf~~l~~~ 263 (284)
++++|+++++.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 170
>PRK11058 GTPase HflX; Provisional
Probab=99.83 E-value=1.7e-19 Score=167.39 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--cccccc------cccC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPI------ACKD 171 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--~~~~~~------~~~~ 171 (284)
.+|+++|.+|||||||+|+|++.++. .+.+.++.+.....+.+.+.. .+.+|||+|..+. ..++.. .++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999998765 455555566666666665531 4669999998542 222332 3689
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCC
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATH 249 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~ 249 (284)
+|++|+|+|++++.+++.+..|.+.+..... ..|+|+|+||+|+. +.. . .. .. ....+.+ ++++||++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---~~~-~--~~--~~--~~~~~~~~~v~ISAkt 346 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---DDF-E--PR--ID--RDEENKPIRVWLSAQT 346 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC---Cch-h--HH--HH--HHhcCCCceEEEeCCC
Confidence 9999999999999888887655554544433 34558999999962 111 0 00 11 1123555 48899999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
|.|++++++++...+...
T Consensus 347 G~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 347 GAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999988543
No 171
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=9e-20 Score=179.90 Aligned_cols=257 Identities=15% Similarity=0.105 Sum_probs=154.4
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc------ccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++..+...++.+|.+.++.....-+.+.++.....++++-++...... +..+.....-..|+-....
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~G 423 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRG 423 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCC
Confidence 4556666677777888999999888777766677777766666666554432111 1111111000001111100
Q ss_pred cccccc-cccccCCCCCCC---CCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEE
Q 023316 78 EAGLVE-LSRTFSSGYDTD---SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFS 151 (284)
Q Consensus 78 ~~~~~~-~~~~~~~~~~~~---~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~ 151 (284)
....-. ............ .....+||+++|.+|||||||+|++++.+.. ..+++++.+.....+.+++.. +.
T Consensus 424 I~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~ 501 (712)
T PRK09518 424 VGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WL 501 (712)
T ss_pred chHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EE
Confidence 000000 000000000000 0123489999999999999999999998853 667777777777777788876 45
Q ss_pred EEeCCCCcCCc----------ccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 152 IWDVGGDSRSF----------DHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 152 l~Dt~G~e~~~----------~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+|||+|..+.. .+. ..+++.+|++++|+|+++..++++... +..+.. ...|.|+|+||+||. +
T Consensus 502 liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~---~ 575 (712)
T PRK09518 502 FIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLM---D 575 (712)
T ss_pred EEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcC---C
Confidence 99999975321 111 234689999999999999988887653 344433 234668999999973 2
Q ss_pred CCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 221 PDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
.........+....... ..++.+++||++|.|++++|+.+.+...+..
T Consensus 576 ~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~ 624 (712)
T PRK09518 576 EFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESWD 624 (712)
T ss_pred hhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 11111111111111111 1357789999999999999999998876543
No 172
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=7.3e-20 Score=146.72 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--cC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD 171 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~~ 171 (284)
++|+++|.||||||||+|++++.+.. .++|.++.+.....+.+.+.. +.+.|++|.-.... +...++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999999999977 888988888888888888854 67999999755432 223343 68
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 251 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~ 251 (284)
.|++|+|.|.++.+.-. ....++.+. ..|.|++.||+|+ ..+.-...+...+++..|++++.+||++++
T Consensus 79 ~D~ii~VvDa~~l~r~l---~l~~ql~e~--g~P~vvvlN~~D~------a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 79 PDLIIVVVDATNLERNL---YLTLQLLEL--GIPVVVVLNKMDE------AERKGIEIDAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEEEGGGHHHHH---HHHHHHHHT--TSSEEEEEETHHH------HHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred CCEEEEECCCCCHHHHH---HHHHHHHHc--CCCEEEEEeCHHH------HHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence 99999999998754322 233333332 3556899999995 222222334678888899999999999999
Q ss_pred CHHHHHHHH
Q 023316 252 NVNKIFKFI 260 (284)
Q Consensus 252 ~v~~lf~~l 260 (284)
|++++++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999998865
No 173
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=2.5e-19 Score=167.85 Aligned_cols=250 Identities=18% Similarity=0.184 Sum_probs=151.4
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++.+++..++.+|.+.++......+.+.++....+++++-++..... .+..+.... +-+...
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~~-----~~~iSa 144 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLGE-----PYPISA 144 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCCC-----CEEEEe
Confidence 445566677888888999999988777666677777776556666655443211 111111110 000111
Q ss_pred ccc--cccc----ccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEE
Q 023316 78 EAG--LVEL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIA 149 (284)
Q Consensus 78 ~~~--~~~~----~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~ 149 (284)
..+ .... ................+||+++|.+|+|||||++++++.... ...+++..+.....+..++..
T Consensus 145 ~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~-- 222 (435)
T PRK00093 145 EHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK-- 222 (435)
T ss_pred eCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--
Confidence 111 0000 000000001111234699999999999999999999987643 555666666555556666655
Q ss_pred EEEEeCCCCcCCcccc-----------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 150 FSIWDVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~-----------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
+.+|||+|..+...+. ..+++.+|++|+|+|++++.+.++.. ++..+.+. ..+.|+|+||+|+.
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~~--~~~~ivv~NK~Dl~-- 297 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALEA--GRALVIVVNKWDLV-- 297 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHHc--CCcEEEEEECccCC--
Confidence 5699999976543221 13678999999999999988776654 33333332 34568999999972
Q ss_pred CCCCcccchHHHHH-HHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 219 LPPDLQWTIATQAR-AYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 219 ~~~~~~~~~~~~~~-~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
++.......++.. .+.....++++++||++|.|++++|+.+.....+
T Consensus 298 -~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 298 -DEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred -CHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2111111122222 2222235799999999999999999998876543
No 174
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.82 E-value=3.2e-19 Score=171.93 Aligned_cols=157 Identities=12% Similarity=0.169 Sum_probs=118.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC-------CCCcc-------cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE-------QERSL-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~-------~~~~~-------~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~~ 161 (284)
-+|+++|+.++|||||+++|+... +...+ ...|.++....+.+ ++..+.+.+|||+|+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998652 22111 12366666554433 567789999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA- 240 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~- 240 (284)
...+..+++.+|++|+|+|+++..+.+....|...+. ...+.|+|+||+|+. ... ..+...++++.+++
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~----~~~---~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLP----SAD---PERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCC----ccC---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999888877777765443 234558999999962 211 12233455555665
Q ss_pred --cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 241 --TLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 241 --~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.++++||++|.|++++|+++...+...
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 479999999999999999999887543
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=1.2e-18 Score=141.75 Aligned_cols=155 Identities=20% Similarity=0.278 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc-----------cc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-----------VP 166 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~-----------~~ 166 (284)
.++|+++|++|+|||||++++++.... ...+++..+.....+..++.. +.+|||+|....... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999988744 444545445544556666655 669999998654211 11
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL 242 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~ 242 (284)
.++..+|++++|+|++++.+..... ++..+.. ...++++++||+|+. ... ..........+.+.. +.++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLV---EKD-SKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccC---Ccc-HHHHHHHHHHHHhhcccccCCce
Confidence 2467999999999999988765543 3333332 234558999999962 111 011111122233333 3689
Q ss_pred EEEcCCCCcCHHHHHHHHHHH
Q 023316 243 FFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
+++||+++.|++++++++.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 999999999999999998763
No 176
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.82 E-value=1.8e-19 Score=152.05 Aligned_cols=119 Identities=20% Similarity=0.259 Sum_probs=91.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCC-cEEEEEEe
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD 180 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a-d~iilv~d 180 (284)
+|+++|+++||||||+++|...++...++++..+.........+....+.+||++|+++++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998876666555444332222224456789999999999998888899999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhH----CCCCceEEEEeCCCCCCCCC
Q 023316 181 LTSR-CTLNSIVGWYSEARKW----NQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 181 ~~~~-~s~~~~~~~~~~l~~~----~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
.++. .++.++..|+..+... ....|+++++||+|+....+
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 9997 6788877766555332 23445579999999865444
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.81 E-value=4.1e-19 Score=148.36 Aligned_cols=156 Identities=13% Similarity=0.157 Sum_probs=102.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc----------CCcccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e----------~~~~~~~~ 167 (284)
..+||+++|.+|+|||||++++++.++. ...++.|.+.......+ ...+.+|||+|.. .+..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4789999999999999999999998754 33334443322222222 2568899999953 23344445
Q ss_pred cccCC---cEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316 168 ACKDA---VAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 168 ~~~~a---d~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 242 (284)
+++.+ +++++++|.+++.+..+ +..|+. . ...+.++++||+|+ ++........+++..+......++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~---~--~~~~~iiv~nK~Dl---~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLK---E--YGIPVLIVLTKADK---LKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHHH---H--cCCcEEEEEECccc---CCHHHHHHHHHHHHHHHHhcCCce
Confidence 56544 67888899887655433 223332 1 13345899999996 332222222334445555446889
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHh
Q 023316 243 FFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+++||+++.|++++|+.+...+.
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999987764
No 178
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.80 E-value=6.8e-19 Score=169.66 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=110.7
Q ss_pred cCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------ccccc--cCCcEEEE
Q 023316 107 GDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF 177 (284)
Q Consensus 107 G~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~--~~ad~iil 177 (284)
|++|||||||+|++++..+. .++++++.+.....+.+++.. +++|||+|++++... .+.|+ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999999998876 777888888877777777754 679999999987654 34444 37899999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|+|.++.+. ...+..++.+ .+.|.++|+||+|+. .+.....+.+.+++..|++++++||++|+|++++|
T Consensus 79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~------~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEA------EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHH------HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence 999987432 2233333333 234558999999962 12222345678888899999999999999999999
Q ss_pred HHHHHHH
Q 023316 258 KFIMAKL 264 (284)
Q Consensus 258 ~~l~~~i 264 (284)
+++.+..
T Consensus 148 ~~i~~~~ 154 (591)
T TIGR00437 148 DAIRKAI 154 (591)
T ss_pred HHHHHHh
Confidence 9998764
No 179
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=3.5e-18 Score=151.96 Aligned_cols=172 Identities=17% Similarity=0.134 Sum_probs=115.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA 168 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~ 168 (284)
..-.|+++|.+|||||||+|++++.+.. ...+.+..+........+ ...+.+|||+|...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 3567999999999999999999998865 333322222222222222 36688999999865432 22335
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA 247 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa 247 (284)
+.++|++++|+|+++..+- ....+++.+.. ...|.++|+||+|+ ... ..........+.+..+ .+++.+||
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl---~~~--~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDL---VKD--KEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcC---CCC--HHHHHHHHHHHHhhCCCCeEEEecC
Confidence 7899999999999883321 11233333332 23456899999996 211 1122445555655554 57899999
Q ss_pred CCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316 248 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 280 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 280 (284)
+++.|++++++++...+...+|....+..++.+
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~ 186 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGPPYYPEDQITDRP 186 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 999999999999999998888877766555443
No 180
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=1.2e-18 Score=163.19 Aligned_cols=147 Identities=19% Similarity=0.259 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------ccccccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK 170 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~~~ 170 (284)
.||+++|.+|||||||+++|.+.+.. ...+.++.+.....+.+++ ..+.+|||+|++.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999988753 5566666677667777777 56889999999872 223445788
Q ss_pred CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 171 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
.+|++|+|+|+++..+.. .+..|+... ..|.|+|+||+|+. . . .....++ ...++ .++++||
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~----~--~---~~~~~~~-~~lg~~~~~~iSa 144 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP----D--E---EADAYEF-YSLGLGEPYPISA 144 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc----c--c---hhhHHHH-HhcCCCCCEEEEe
Confidence 999999999998865443 334555432 44568999999952 1 1 1222222 34566 4899999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 023316 248 THNINVNKIFKFIMAKL 264 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i 264 (284)
++|.|++++|+.+....
T Consensus 145 ~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 145 EHGRGIGDLLDAILEEL 161 (435)
T ss_pred eCCCCHHHHHHHHHhhC
Confidence 99999999999998843
No 181
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.79 E-value=3e-18 Score=164.50 Aligned_cols=157 Identities=11% Similarity=0.072 Sum_probs=108.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
....+|+++|+.++|||||+++|.+.++. ...++++.++....+.+++.. .+.+|||+|++.|..++..++..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34578999999999999999999998877 444455555555556564431 5789999999999999998999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCCc
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHNI 251 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~~ 251 (284)
+|+|+++...-+....| ..+.. ...|.|+++||+|+. ........+.+.. ....++ .+++++||++|+
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~----~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKP----EANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccc----cCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999874332222222 22221 234558999999962 2111111122111 122232 478999999999
Q ss_pred CHHHHHHHHHH
Q 023316 252 NVNKIFKFIMA 262 (284)
Q Consensus 252 ~v~~lf~~l~~ 262 (284)
|++++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1e-18 Score=144.37 Aligned_cols=148 Identities=13% Similarity=0.128 Sum_probs=96.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----------Cccccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVP 166 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----------~~~~~~ 166 (284)
....+|+++|++|+|||||++++++..+. ...++.+.+.....+..++ .+.+|||+|... +..+..
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 44689999999999999999999998644 2223333333222333333 478999999532 333344
Q ss_pred ccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023316 167 IACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT 241 (284)
Q Consensus 167 ~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~ 241 (284)
.|++. ++++++|+|.+++-+..+.. ++..+... ..|.++++||+|+ .++.......++++...+..+ ++
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~~--~~pviiv~nK~D~---~~~~~~~~~~~~i~~~l~~~~~~~~ 166 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRER--GIPVLIVLTKADK---LKKSELNKQLKKIKKALKKDADDPS 166 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHHc--CCCEEEEEECccc---CCHHHHHHHHHHHHHHHhhccCCCc
Confidence 55553 57999999998866655542 23333322 3455799999996 222222223455566666554 58
Q ss_pred EEEEcCCCCcCHH
Q 023316 242 LFFSSATHNINVN 254 (284)
Q Consensus 242 ~~~~Sa~~~~~v~ 254 (284)
++++||++|+|++
T Consensus 167 v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 167 VQLFSSLKKTGID 179 (179)
T ss_pred eEEEECCCCCCCC
Confidence 9999999999973
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=2.5e-18 Score=165.56 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=114.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC---CCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~---~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
+.|+++|+.++|||||+++|++. .+. ....+++.++....+..++ ..+.+||++|+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 36899999999999999999973 333 2334566666666666666 66889999999999887778889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEEEcCC
Q 023316 177 FMFDLTS---RCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFFSSAT 248 (284)
Q Consensus 177 lv~d~~~---~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~~~~Sa~ 248 (284)
+|+|+++ +.+++.+. + +.. . ..+ +|+|+||+|+. +.+......+++..+.+.. +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl~-i---l~~-l-gi~~iIVVlNK~Dlv---~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-V---LDL-L-GIPHTIVVITKADRV---NEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHHH-H---HHH-c-CCCeEEEEEECCCCC---CHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999987 44544432 2 222 1 345 58999999962 2221112345666666654 5789999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023316 249 HNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~ 267 (284)
+|+|+++++..+...+...
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999988766544
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=7.2e-18 Score=135.85 Aligned_cols=154 Identities=18% Similarity=0.116 Sum_probs=101.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------cccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~~ 169 (284)
..+|+++|.+|+|||||++++.+.+.. ...+.+........ .......+.+|||+|...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGI--YTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEE--EEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 578999999999999999999988754 22222221111111 223346688999999865432 223457
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSAT 248 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~ 248 (284)
..+|++++|+|++++.+. ....+.+.+... ..|.++|+||+|+. .. .....+....+.... ..+++++|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~---~~--~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLV---KD--KEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhcc---cc--HHHHHHHHHHHHhccCCCceEEEEec
Confidence 899999999999987321 122333444332 34668999999962 11 112233344444444 3689999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMAK 263 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~ 263 (284)
++.|++++|+++.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999998764
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.78 E-value=3e-18 Score=144.55 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=101.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC---CCccc---ccceeeeeEEEE-----------------------EC--C----
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ---ERSLQ---MAGLNLINKTLM-----------------------VQ--G---- 145 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~---~~~~~---t~~~~~~~~~~~-----------------------~~--~---- 145 (284)
++|+++|..++|||||+..+.+-.. ..... +....+....+. .. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4789999999999999999965421 11111 111111110000 00 1
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
....+.+|||+|++.|.......+..+|++++|+|++++ .+++.+..| ... ...++|+|+||+|+. ..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~-~~~~iiivvNK~Dl~---~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM-GLKHIIIVQNKIDLV---KE 152 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc-CCCcEEEEEEchhcc---CH
Confidence 115688999999998877777777899999999999873 333333222 221 122447899999962 21
Q ss_pred CcccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 222 DLQWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.......++.+++.+.+ +++++++||++|+|++++|+++...+...
T Consensus 153 ~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~ 201 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTP 201 (203)
T ss_pred HHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCC
Confidence 11111134445555443 67899999999999999999998877553
No 186
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=1.7e-17 Score=142.84 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=102.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----cc---ccccccCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DH---VPIACKDAV 173 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~---~~~~~~~ad 173 (284)
+|+++|.+|+|||||++++.+.... ..++.++.+.....+.+++. .+++|||+|+.+.. .. ...+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~--~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA--KIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe--EEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999999998754 55564445555666667664 57899999986543 11 224689999
Q ss_pred EEEEEEeCCChh-hHHHHHHHHHHH-----------------------------------------HhH---C-------
Q 023316 174 AILFMFDLTSRC-TLNSIVGWYSEA-----------------------------------------RKW---N------- 201 (284)
Q Consensus 174 ~iilv~d~~~~~-s~~~~~~~~~~l-----------------------------------------~~~---~------- 201 (284)
++++|+|+++++ ..+.+.+.++.. +++ +
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 333332222110 011 0
Q ss_pred ---------------CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 202 ---------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 202 ---------------~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
...|.++|+||+|+. + .+++..+++. ..++++||+++.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~---~-------~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI---S-------IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC---C-------HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 012337999999961 1 2334455543 4689999999999999999998765
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.76 E-value=6.7e-18 Score=164.60 Aligned_cols=159 Identities=12% Similarity=0.084 Sum_probs=109.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc--eeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG--LNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+|+++|+.++|||||+++|.+..+. ....+++ ...+...+..++....+.+|||+|++.|..++..++..+|++
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4578999999999999999999988776 3333332 223333444445567889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN 250 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~ 250 (284)
|+|+|+++....+....|. .+.. ...|.|+++||+|+. ........++... +...++ ++++++||++|
T Consensus 323 ILVVDA~dGv~~QT~E~I~-~~k~--~~iPiIVViNKiDl~----~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG 395 (742)
T CHL00189 323 ILIIAADDGVKPQTIEAIN-YIQA--ANVPIIVAINKIDKA----NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQG 395 (742)
T ss_pred EEEEECcCCCChhhHHHHH-HHHh--cCceEEEEEECCCcc----ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCC
Confidence 9999998753333222221 2221 234558999999962 2111111222221 133344 68999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++|+++....
T Consensus 396 ~GIdeLle~I~~l~ 409 (742)
T CHL00189 396 TNIDKLLETILLLA 409 (742)
T ss_pred CCHHHHHHhhhhhh
Confidence 99999999988754
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=6.7e-18 Score=157.92 Aligned_cols=148 Identities=20% Similarity=0.239 Sum_probs=108.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--------CcccccccccC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD 171 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--------~~~~~~~~~~~ 171 (284)
||+++|.+|||||||+|+|++.+.. ...++++.+.....+.+++.. +.+|||+|... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999998754 556666666666666777754 78999999743 33445567899
Q ss_pred CcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023316 172 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT 248 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~ 248 (284)
+|++++|+|..+..+..+ +..|+.+ . ..|.|+|+||+|+. .... ...+ ...+++ +++++||+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~---~--~~piilVvNK~D~~----~~~~-----~~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK---S--GKPVILVANKIDGK----KEDA-----VAAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH---h--CCCEEEEEECccCC----cccc-----cHHH-HHhcCCCCeEEEeCC
Confidence 999999999987655433 3344432 2 45668999999962 1111 1122 234566 79999999
Q ss_pred CCcCHHHHHHHHHHHHhC
Q 023316 249 HNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~ 266 (284)
+|.|++++++++...+..
T Consensus 144 ~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPE 161 (429)
T ss_pred cCCChHHHHHHHHHhcCc
Confidence 999999999999988754
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.7e-17 Score=163.14 Aligned_cols=158 Identities=10% Similarity=0.047 Sum_probs=109.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
..+...|+++|+.++|||||+++|.+..+. ....+++.+.....+.+++ ..+.||||+|++.|..++..+++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 345678999999999999999999987776 3333444444444555665 4577999999999999999899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH---HHHHHcC--CcEEEEcCCCC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR---AYAKAMK--ATLFFSSATHN 250 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~---~~a~~~~--~~~~~~Sa~~~ 250 (284)
|+|||+++...-+....|. .+. ....|+|+++||+|+. ......+..+.. .++..++ ++++++||++|
T Consensus 365 ILVVdAddGv~~qT~e~i~-~a~--~~~vPiIVviNKiDl~----~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG 437 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAIN-HAK--AAGVPIIVAINKIDKP----GANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG 437 (787)
T ss_pred EEEEECCCCCCHhHHHHHH-HHH--hcCCcEEEEEECcccc----ccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence 9999998743222222221 121 1234558999999962 211111122221 2234444 78999999999
Q ss_pred cCHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAK 263 (284)
Q Consensus 251 ~~v~~lf~~l~~~ 263 (284)
.|++++|+++...
T Consensus 438 ~GI~eLle~I~~~ 450 (787)
T PRK05306 438 EGIDELLEAILLQ 450 (787)
T ss_pred CCchHHHHhhhhh
Confidence 9999999998753
No 190
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2e-17 Score=144.76 Aligned_cols=207 Identities=17% Similarity=0.162 Sum_probs=142.3
Q ss_pred HHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCChHHHH
Q 023316 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV 117 (284)
Q Consensus 42 ~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~----llG~~~vGKSsLl 117 (284)
-.+++++|.+|.+|.++.+..++... +|.....|... +...-..++|++ +||.||+|||||+
T Consensus 111 ~gq~~~~akGG~GG~GN~~Fks~~nr-----AP~~a~~G~~G---------e~r~v~LELKllADVGLVG~PNaGKSTll 176 (369)
T COG0536 111 HGQRFLVAKGGRGGLGNAHFKSSVNR-----APRFATPGEPG---------EERDLRLELKLLADVGLVGLPNAGKSTLL 176 (369)
T ss_pred CCcEEEEEcCCCCCccchhhcCcccC-----CcccCCCCCCC---------ceEEEEEEEeeecccccccCCCCcHHHHH
Confidence 35678999999999999777666554 34444444333 222223456655 9999999999999
Q ss_pred HHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccccc---cCCcEEEEEEeCCChh---h
Q 023316 118 VKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIAC---KDAVAILFMFDLTSRC---T 186 (284)
Q Consensus 118 ~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~---~~ad~iilv~d~~~~~---s 186 (284)
+.+...+.. ..|+-|+..-.-..+.+ ...-.|.+-|.+|.-+- ..+-..|+ ..+.++++|.|++..+ .
T Consensus 177 s~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp 255 (369)
T COG0536 177 SAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDP 255 (369)
T ss_pred HHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCH
Confidence 999999988 88883333322334444 23334779999997552 34555565 4789999999998654 5
Q ss_pred HHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE-EcCCCCcCHHHHHHHHHH
Q 023316 187 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMA 262 (284)
Q Consensus 187 ~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~Sa~~~~~v~~lf~~l~~ 262 (284)
.+++.....+|.+|.+ +.|.+||+||+|+ +.. ....+.....+.+..+...+. +||.+++|++++...+.+
T Consensus 256 ~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~----~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~ 330 (369)
T COG0536 256 IEDYQTIRNELEKYSPKLAEKPRIVVLNKIDL----PLD-EEELEELKKALAEALGWEVFYLISALTREGLDELLRALAE 330 (369)
T ss_pred HHHHHHHHHHHHHhhHHhccCceEEEEeccCC----CcC-HHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHH
Confidence 7888888888888854 5566999999994 221 111133344445555544332 999999999999999988
Q ss_pred HHhCCc
Q 023316 263 KLFNLP 268 (284)
Q Consensus 263 ~i~~~~ 268 (284)
.+.+.+
T Consensus 331 ~l~~~~ 336 (369)
T COG0536 331 LLEETK 336 (369)
T ss_pred HHHHhh
Confidence 887665
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.75 E-value=2.5e-17 Score=162.57 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------cccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~~ 169 (284)
..+|+++|.+|||||||+|+|++.+.. ...++++.+........++. .+.+|||+|.+.. ......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT--DFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE--EEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 478999999999999999999988754 55565555555555555554 4779999998742 22334568
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+.+|++|+|+|+++.-+..+ ..|.+.++. ...|.|+|+||+|+. .. . ......+....+ ..+++||++
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~----~~--~--~~~~~~~~lg~~-~~~~iSA~~ 420 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQ----AS--E--YDAAEFWKLGLG-EPYPISAMH 420 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccc----cc--h--hhHHHHHHcCCC-CeEEEECCC
Confidence 89999999999986433221 245555543 245668999999962 11 1 111222222222 457899999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.||+++|++++..+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999998855
No 192
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.75 E-value=2.9e-17 Score=130.78 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=102.6
Q ss_pred EEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------ccccCCcEE
Q 023316 105 LLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IACKDAVAI 175 (284)
Q Consensus 105 llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~~~~~ad~i 175 (284)
++|.+|+|||||++++.+.... ....+...+.........+ ...+.+|||+|...+..... .+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 2333333333333333331 45688999999987654433 477899999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHH-HHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
++|+|..+..+..... |...... ...|.++|+||+|+. .+.......+ .........+++++++||+++.|++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLL---PEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccC---ChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 9999999988766654 3333322 244558999999962 2211111000 1223334446899999999999999
Q ss_pred HHHHHHHHH
Q 023316 255 KIFKFIMAK 263 (284)
Q Consensus 255 ~lf~~l~~~ 263 (284)
++++++.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999998865
No 193
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=4.8e-17 Score=140.53 Aligned_cols=173 Identities=19% Similarity=0.206 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA 168 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~~~ 168 (284)
..--|+++|.||||||||+|+++|.+.. +..+.++.+.....++.+ ..++.+.||+|..+-.. .....
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence 4567999999999999999999999977 555644444444444444 45677999999876322 23345
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA 247 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa 247 (284)
+.++|++++|.|++....-.+ ...++.++. ...|+|++.||+|. ..++. . .......+..... ...+.+||
T Consensus 83 l~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~---~~~~~-~-l~~~~~~~~~~~~f~~ivpiSA 154 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDK---VKPKT-V-LLKLIAFLKKLLPFKEIVPISA 154 (298)
T ss_pred hccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEcccc---CCcHH-H-HHHHHHHHHhhCCcceEEEeec
Confidence 789999999999987544221 233445544 34567899999995 22211 0 1222222333333 36888999
Q ss_pred CCCcCHHHHHHHHHHHHhCCccccccccCCCCCC
Q 023316 248 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPI 281 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~ 281 (284)
++|.|++.+.+.+...+.+.+|.......++.|.
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~ 188 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPE 188 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCChhhccCChH
Confidence 9999999999999999999999998888777663
No 194
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.75 E-value=2.5e-17 Score=133.08 Aligned_cols=151 Identities=15% Similarity=0.190 Sum_probs=99.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----------Cccccccccc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK 170 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----------~~~~~~~~~~ 170 (284)
+|+++|++|+|||||++.++++.+. ...++.+.+.....+..++ .+.+|||+|... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999999976655 3334545444444444443 688999999543 2333444544
Q ss_pred ---CCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH--HcCCcEE
Q 023316 171 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLF 243 (284)
Q Consensus 171 ---~ad~iilv~d~~~~~s--~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~--~~~~~~~ 243 (284)
..+++++++|.++..+ ...+..|+... ..|.++|+||+|+ ..+..............+ ....+++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK---LKKSELAKALKEIKKELKLFEIDPPII 149 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc---CChHHHHHHHHHHHHHHHhccCCCceE
Confidence 4578899999876633 23344565442 2455799999996 222222222333333333 3456889
Q ss_pred EEcCCCCcCHHHHHHHHHHH
Q 023316 244 FSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 244 ~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++||+++.|+.++++++.+.
T Consensus 150 ~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999998765
No 195
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=2.9e-18 Score=131.89 Aligned_cols=160 Identities=19% Similarity=0.220 Sum_probs=121.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+.+|.++|-.|+|||+++.++.-.+.....||+|.+.. ++.+ +++.+++||.+|+-..+..|+.||.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v~y--KNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TVPY--KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cccc--ccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 578999999999999999999988888788899997754 3333 668899999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHC-CCCceEEEEeCCCCCCCCCCCcccch--HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 179 FDLTSRCTLNSIV-GWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTI--ATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 179 ~d~~~~~s~~~~~-~~~~~l~~~~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~--~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|.+|++...... .++..+.+.. ..+..+|++||.|. +....+.. ..-...-.+..-+.++++||.+|+|++
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~----~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY----SGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc----hhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999998766554 3444444332 34555799999993 33221111 111111122334789999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++++|+.+.+..
T Consensus 169 ~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 169 PAMDWLQRPLKS 180 (182)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=3.8e-17 Score=157.74 Aligned_cols=158 Identities=13% Similarity=0.187 Sum_probs=114.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|+.++|||||+.+|+... +. +.. .+.|.++....+.+ ++..+.+.+|||+|+++
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 3489999999999999999997631 11 111 13355554443332 56678999999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 240 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (284)
|...+..+++.+|++|+|+|+++....+....|..... .+.+.|+|+||+|+ +.... .....++.+.+++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl----~~a~~---~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDL----PAADP---ERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCC----CcccH---HHHHHHHHHHhCC
Confidence 99889999999999999999998777666666654432 23455899999996 22111 2223344444555
Q ss_pred c---EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 241 T---LFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 241 ~---~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
. ++++||++|.|++++|+++...+...
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 4 89999999999999999999887543
No 197
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.74 E-value=7.1e-17 Score=159.32 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=111.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~----------~~~~ 168 (284)
.++|+++|.+|||||||+|++++.+.. .+.+.++.+.....+.. ....+.+|||+|...+... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~--~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST--TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc--CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 578999999999999999999988765 55565555544444443 4456789999999887542 2224
Q ss_pred c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 169 C--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 169 ~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
+ ..+|++++|+|.++.+.- ..|..++.+. ..|.|++.||+|+. + ++....+.+++.+.+|++++++|
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~--giPvIvVlNK~Dl~----~--~~~i~id~~~L~~~LG~pVvpiS 149 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL--GIPCIVALNMLDIA----E--KQNIRIDIDALSARLGCPVIPLV 149 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc--CCCEEEEEEchhhh----h--ccCcHHHHHHHHHHhCCCEEEEE
Confidence 3 489999999999886542 2344455443 34558999999952 1 22234566788889999999999
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 023316 247 ATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i 264 (284)
|++|+|++++.+.+....
T Consensus 150 A~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 150 STRGRGIEALKLAIDRHQ 167 (772)
T ss_pred eecCCCHHHHHHHHHHhh
Confidence 999999999999887654
No 198
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=8.6e-17 Score=146.20 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=111.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc---------ccccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC 169 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~---------~~~~~~~ 169 (284)
..|+++|.||||||||.|||++.+.. +++|.++.|-......+.+.. |.+.||+|.+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 46999999999999999999999977 888988888777778888866 7799999988533 1233467
Q ss_pred cCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 170 KDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
..||++|||+|....-+-+ .+.+|+. ....|.|||+||+|- . ..++...+|. ++|. +.+.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~----~-----~~e~~~~efy-slG~g~~~~IS 146 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDN----L-----KAEELAYEFY-SLGFGEPVPIS 146 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccC----c-----hhhhhHHHHH-hcCCCCceEee
Confidence 8999999999997644432 2334433 224566899999992 1 1123333333 3454 788899
Q ss_pred CCCCcCHHHHHHHHHHHHh
Q 023316 247 ATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~ 265 (284)
|.+|.|+.++++.++..+.
T Consensus 147 A~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhhccCHHHHHHHHHhhcC
Confidence 9999999999999999883
No 199
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=1.2e-17 Score=154.53 Aligned_cols=165 Identities=21% Similarity=0.236 Sum_probs=122.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
....++|+|+|+.|||||||+..++.++|....|..-..+..- ..+....+...+.||+..+.-+.....-++.||++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP-advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP-ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC-CccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 4457999999999999999999999999986665443222111 223344455779999877666555567789999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-C-cEEEEcCCCC
Q 023316 177 FMFDLTSRCTLNSIV-GWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-A-TLFFSSATHN 250 (284)
Q Consensus 177 lv~d~~~~~s~~~~~-~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~-~~~~~Sa~~~ 250 (284)
++|++++++|++.+. .|+..+++.. .+.|+||||||+|+...-.. ..+....-+..++. + ..++|||++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----SDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 999999999999997 8999999987 56677999999997422221 11222333333332 3 5788999999
Q ss_pred cCHHHHHHHHHHHHhC
Q 023316 251 INVNKIFKFIMAKLFN 266 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~ 266 (284)
.|+.|+|....+.++.
T Consensus 161 ~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhHhhhhhhhheeec
Confidence 9999999998877654
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.72 E-value=5.4e-17 Score=151.60 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=99.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--C------------------------------cccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--R------------------------------SLQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~------------------------------~~~t~~~~~~~~~~~~~~ 145 (284)
...++|+++|.+++|||||+++|+...-. . ..+.++.+..... +..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~--~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKK--FET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEE--Eec
Confidence 34799999999999999999999843211 0 0122333333333 333
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
..+.+.+|||+|+++|.......++.+|++|+|+|++++.++.... .++..+.. ....+.|+++||+|+... +++..
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~~~-~~~~~ 159 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAVNY-DEKRY 159 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccccc-cHHHH
Confidence 4567889999999988765555678999999999998732222211 22222222 222234789999996210 00111
Q ss_pred cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316 225 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 257 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf 257 (284)
....++...+++..+ ++++++||++|+|+++.+
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 123456666666665 468999999999998754
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.71 E-value=4.9e-17 Score=151.93 Aligned_cols=157 Identities=12% Similarity=0.038 Sum_probs=103.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC------------------------------cccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER------------------------------SLQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~~ 145 (284)
...++|+++|..++|||||+.+|+.. .... ...+++.+.....+ ..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~--~~ 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKF--ET 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEE--cc
Confidence 34789999999999999999999752 1110 01133444443343 33
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
..+.+.+|||+|+++|.......++.+|++|+|+|+++.+++..... +...+.+.....+.|+++||+|+.+. .++..
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~-~~~~~ 161 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNY-DEEEF 161 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCc-cHHHH
Confidence 44678999999999987666667889999999999998864322111 11112222222334789999997311 11111
Q ss_pred cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316 225 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 257 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf 257 (284)
....++++.+++..+ ++++++||++|.|+.+.+
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 223566777787765 579999999999998744
No 202
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.5e-17 Score=131.93 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=118.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCC---C-----CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ---E-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK 170 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~---~-----~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~ 170 (284)
..+-|+++|..++|||||+.+...... . .-.+|.|.+.. ++.+++ ..+.+||.+||+..+++|..||.
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~~--~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVCN--APLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeecc--ceeEEEEcCChHHHHHHHHHHHH
Confidence 367899999999999999998754321 1 23346676655 455554 44779999999999999999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc---CCcEEEE
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATLFFS 245 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~---~~~~~~~ 245 (284)
.++++|+++|.++++-|+....-++.+..+ .....| ++.+||.|+. ........+.....++.. ..++..+
T Consensus 92 ~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q----~~~~~~El~~~~~~~e~~~~rd~~~~pv 167 (197)
T KOG0076|consen 92 LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQ----NAMEAAELDGVFGLAELIPRRDNPFQPV 167 (197)
T ss_pred HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhh----hhhhHHHHHHHhhhhhhcCCccCccccc
Confidence 999999999999999999887666666554 234455 6899999962 211111122222223433 3578889
Q ss_pred cCCCCcCHHHHHHHHHHHHhCC
Q 023316 246 SATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
||.+|+||++...|++..+..+
T Consensus 168 Sal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 168 SALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999988655
No 203
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.71 E-value=1.1e-16 Score=153.64 Aligned_cols=157 Identities=14% Similarity=0.116 Sum_probs=101.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcc-----cccceeeeeEEEE------------ECCeEEEEEEEeCCCCcCCcc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~-----~t~~~~~~~~~~~------------~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
.-|+++|++++|||||+++|.+..+.... +++|..+...... ++.....+.+|||+|++.|..
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 46999999999999999999988776222 2334433322110 001112378999999999999
Q ss_pred cccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----------cc-chHH
Q 023316 164 HVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QW-TIAT 229 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----------~~-~~~~ 229 (284)
++..+++.+|++++|||+++ +.+++.+..+ +. ...|.|+++||+|+........ +. .+..
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~ 158 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQ 158 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHH
Confidence 99999999999999999987 4555544322 21 2345589999999742211000 00 0000
Q ss_pred --------HHHHHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 230 --------QARAYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 230 --------~~~~~a~------------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
...++++ .+ .++++.+||++|+|+++++.++...
T Consensus 159 ~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 159 NLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0111111 11 3688999999999999999988643
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.6e-16 Score=144.84 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc--------ccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP--------IAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~--------~~~ 169 (284)
-+|++++|.||||||||+|.|.+.+.. .+.+.++.|+....+.++|.. +.+.||+|..+-..... ..+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 589999999999999999999998866 888999999999999999965 66999999987554332 357
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
..||.+++|+|.+.+.+-.+.. .+. ....+.+.++|.||.||..... .....-..+.+++.+||++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~-~~~---~~~~~~~~i~v~NK~DL~~~~~----------~~~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLA-LIE---LLPKKKPIIVVLNKADLVSKIE----------LESEKLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHH-HHH---hcccCCCEEEEEechhcccccc----------cchhhccCCCceEEEEecC
Confidence 8999999999999863322221 111 1233455589999999731111 1111112245789999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
|+|++++.+.+.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999988877655
No 205
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.70 E-value=1e-16 Score=123.05 Aligned_cols=157 Identities=16% Similarity=0.200 Sum_probs=119.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..++||.++|-.++|||||+..+.+.....-.+|.|++.. .+.++| .+.+.+||.+||...+..|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k--~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTK--KVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceE--EEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 4589999999999999999999998887777788897654 555554 4788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhH-CCCCce-EEEEeCCCCCCCCCCCcccchHHHHHH----HHHHcCCcEEEEcCCCCc
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARA----YAKAMKATLFFSSATHNI 251 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~----~a~~~~~~~~~~Sa~~~~ 251 (284)
|.|.+|+.-|+++..-+-++.+. .....| .+-+||.||.-+.+ .++.+.. ..+..-+.+.++||.+++
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCcccccc
Confidence 99999999999887666665443 234455 47799999621111 1122211 112223567789999999
Q ss_pred CHHHHHHHHHHH
Q 023316 252 NVNKIFKFIMAK 263 (284)
Q Consensus 252 ~v~~lf~~l~~~ 263 (284)
++.+-.+|+...
T Consensus 166 g~~dg~~wv~sn 177 (185)
T KOG0074|consen 166 GSTDGSDWVQSN 177 (185)
T ss_pred CccCcchhhhcC
Confidence 999888887643
No 206
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=4.5e-16 Score=134.82 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=134.7
Q ss_pred HHHHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeE----EEEEcCCCCChHHH
Q 023316 41 FIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLK----ISLLGDCQIGKTSF 116 (284)
Q Consensus 41 ~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K----I~llG~~~vGKSsL 116 (284)
...+++++|.+|-+|.++...++-...+ |.....|... +...-..++| |-+||.||+|||||
T Consensus 147 ~~~~~~i~arGG~GG~gn~~fls~~~r~-----p~~~~~G~~G---------~e~~~~lELKsiadvGLVG~PNAGKSTL 212 (366)
T KOG1489|consen 147 KEGDRVIAARGGEGGKGNKFFLSNENRS-----PKFSKPGLNG---------EERVIELELKSIADVGLVGFPNAGKSTL 212 (366)
T ss_pred cCCcEEEEeecCCCCccceeeccccccC-----cccccCCCCC---------ceEEEEEEeeeecccceecCCCCcHHHH
Confidence 3466789999998876554433311111 1111111111 1111123455 44999999999999
Q ss_pred HHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----cccccccc---cCCcEEEEEEeCCCh---h
Q 023316 117 VVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPIAC---KDAVAILFMFDLTSR---C 185 (284)
Q Consensus 117 l~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~~~~~~~~---~~ad~iilv~d~~~~---~ 185 (284)
++++...+.. ..|+-|++.-...++.+++-. .+.+-|.+|.-+- +.+-..|+ ..|+..++|.|++.. .
T Consensus 213 L~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~ 291 (366)
T KOG1489|consen 213 LNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRN 291 (366)
T ss_pred HHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCC
Confidence 9999999888 778844444444455555433 3789999997653 34555565 478999999999988 8
Q ss_pred hHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHHHHHHHHH
Q 023316 186 TLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 186 s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v~~lf~~l~ 261 (284)
.++.++.+..++..+.. +.|.++|+||+|+ ++. ..+.+.++++...-+ ++.+||++++|+.++.+.|-
T Consensus 292 p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~----~ea----e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr 363 (366)
T KOG1489|consen 292 PWQQLQLLIEELELYEKGLADRPALIVANKIDL----PEA----EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLR 363 (366)
T ss_pred HHHHHHHHHHHHHHHhhhhccCceEEEEeccCc----hhH----HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHh
Confidence 89999988888877753 4566899999994 221 123357777777544 89999999999999988765
Q ss_pred H
Q 023316 262 A 262 (284)
Q Consensus 262 ~ 262 (284)
.
T Consensus 364 ~ 364 (366)
T KOG1489|consen 364 E 364 (366)
T ss_pred h
Confidence 4
No 207
>PRK10218 GTP-binding protein; Provisional
Probab=99.69 E-value=5.6e-16 Score=149.20 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc--CCCCCc-------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~--~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
..+|+++|+.++|||||+.+|+. +.+... ..+.|.++..+...+....+.+.+|||+|+.+|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 46899999999999999999986 333211 124567777776666666788999999999999999
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------H
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------A 237 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~ 237 (284)
+..+++.+|++|+|+|+++....+. ..++..+.. ...|+|++.||+|+. ......+.++...+.. .
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~----~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRP----GARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCC----CCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999987543333 333333333 244568999999953 2222223344444432 2
Q ss_pred cCCcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023316 238 MKATLFFSSATHNI----------NVNKIFKFIMAKLFNL 267 (284)
Q Consensus 238 ~~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~ 267 (284)
..++++.+||.+|. ++..+|+.++..+...
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 34779999999998 5889999888877544
No 208
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.69 E-value=4.2e-16 Score=133.02 Aligned_cols=172 Identities=19% Similarity=0.197 Sum_probs=116.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcc-----cccccccCCcEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFD-----HVPIACKDAVAI 175 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~-----~~~~~~~~ad~i 175 (284)
||+++|..++||||+.+.+.++-...+....|.+.....-.+ ....+.+++||++||..+-. .....++++.++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 899999999999999888877654433332232222222222 23346789999999987643 356678999999
Q ss_pred EEEEeCCChhh---HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch----HHHHHHHHHHcC---CcEEEE
Q 023316 176 LFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMK---ATLFFS 245 (284)
Q Consensus 176 ilv~d~~~~~s---~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~a~~~~---~~~~~~ 245 (284)
|+|+|+.+.+- +..+...++.+.+++++...-+..+|+|+ ++++.+... .+...+.+...+ +.++.|
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~---l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL---LSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC---S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 99999985543 34445677778888888777799999997 554443332 344455555666 788999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCccccccccCC
Q 023316 246 SATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 277 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~ 277 (284)
|..+ +.+-++|..+++.+.......|+.++.
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~ 188 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPNLSTLENLLNN 188 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTTHCCCCCCCCH
T ss_pred cCcC-cHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9986 689999999999999888888877653
No 209
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.69 E-value=1.3e-16 Score=135.08 Aligned_cols=149 Identities=13% Similarity=0.063 Sum_probs=93.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------------------------ccccceeeeeEEEEECCeEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQGARIA 149 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~~~~~~ 149 (284)
+|+++|.+|+|||||+++|+...-. .. ...+..+.....+..++ ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK--RK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC--ce
Confidence 5899999999999999999753211 10 01222333333333344 45
Q ss_pred EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchH
Q 023316 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIA 228 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~ 228 (284)
+.+|||+|+++|.......++.+|++|+|+|+++...-+.. .+...+.. . ..++ |+|.||+|+... ..+......
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~~~~~-~-~~~~iIvviNK~D~~~~-~~~~~~~i~ 154 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSYILSL-L-GIRHVVVAVNKMDLVDY-SEEVFEEIV 154 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHHHHHH-c-CCCcEEEEEEchhcccC-CHHHHHHHH
Confidence 77999999998866556678999999999999875432221 11122222 2 2244 678999996211 001011224
Q ss_pred HHHHHHHHHcCC---cEEEEcCCCCcCHHHH
Q 023316 229 TQARAYAKAMKA---TLFFSSATHNINVNKI 256 (284)
Q Consensus 229 ~~~~~~a~~~~~---~~~~~Sa~~~~~v~~l 256 (284)
.+.+++++.++. +++.+||++|.|+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 556666777764 5899999999999754
No 210
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=2.1e-15 Score=121.34 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=114.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC---------C-cc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE---------R-SL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~---------~-~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
.....||+|.|..++||||++.++...... . .. .|+..|+.. +.+++ ...+++++|+||++|+-
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~~~-~~~v~LfgtPGq~RF~f 83 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IELDE-DTGVHLFGTPGQERFKF 83 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEEcC-cceEEEecCCCcHHHHH
Confidence 456789999999999999999999876631 0 11 244455543 33333 23477999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-HH-cCCc
Q 023316 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-KA-MKAT 241 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-~~-~~~~ 241 (284)
+|..+++++.+.|++.|.+.+..+ .....++-+...++ .|.++.+||.||++..++ ++.+++. .. ...+
T Consensus 84 m~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~pp-------e~i~e~l~~~~~~~~ 154 (187)
T COG2229 84 MWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALPP-------EKIREALKLELLSVP 154 (187)
T ss_pred HHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCCH-------HHHHHHHHhccCCCc
Confidence 999999999999999999999998 44455555544333 333688999998655443 2233333 33 4789
Q ss_pred EEEEcCCCCcCHHHHHHHHHHH
Q 023316 242 LFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 242 ~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
.++++|.+++++.+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999999888766
No 211
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=4.5e-16 Score=144.42 Aligned_cols=163 Identities=14% Similarity=0.157 Sum_probs=102.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC---Ccc-c--ccceeeee----------------EEEEECC------eEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RSL-Q--MAGLNLIN----------------KTLMVQG------ARIAF 150 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~~-~--t~~~~~~~----------------~~~~~~~------~~~~l 150 (284)
..++|+++|..++|||||+.++.+.... ... . |+...+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4689999999999999999999754221 111 0 11111110 0000011 13568
Q ss_pred EEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 230 (284)
Q Consensus 151 ~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~ 230 (284)
.+|||+|+++|...+......+|++|+|+|+++..........+..+.. ....+.|+++||+|+. +.+......++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~---~~~~~~~~~~~ 158 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLV---SKEKALENYEE 158 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccC---CHHHHHHHHHH
Confidence 8999999999987777777889999999999864311111222222222 2223447899999962 22111112344
Q ss_pred HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 231 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 231 ~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
...+.+.. +++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 45555443 678999999999999999999988664
No 212
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.67 E-value=4.8e-16 Score=129.45 Aligned_cols=158 Identities=13% Similarity=0.128 Sum_probs=105.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
.++|+++|..++|||||+.+|+...-. .. ......+.....+..+.....+.++||+|+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 578999999999999999999754321 10 01112222233333113446688999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH-HHHHHcC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR-AYAKAMK 239 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~a~~~~ 239 (284)
|.......++.+|++|+|+|+.+.-..... ..+..+... +.|.|++.||+|+. ........++.. .+.+..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~~--~~p~ivvlNK~D~~----~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILREL--GIPIIVVLNKMDLI----EKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHHT--T-SEEEEEETCTSS----HHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccceecccccceeeeecccccccccc-ccccccccc--ccceEEeeeeccch----hhhHHHHHHHHHHHhccccc
Confidence 887777788999999999999876543332 223333332 33468999999962 211112223333 4544442
Q ss_pred ------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 240 ------ATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 240 ------~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
++++.+||.+|.|++++++.+.+.+
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 4699999999999999999998765
No 213
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.67 E-value=8e-16 Score=148.20 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=113.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC--CCCCc-------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN--EQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~--~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~ 166 (284)
+|+++|+.++|||||+.+|+.. .+... ....|.++..+...+......+.+|||+|+++|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999999862 22211 11235555555444444457788999999999998888
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------HcC
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK 239 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~~ 239 (284)
.+++.+|++|+|+|+++.. ......|+..+... ..|+|+++||+|+ +......+.++...+.. +..
T Consensus 83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~----~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDR----PSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCC----CCcCHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999998643 34445666666553 3456899999995 22222223344444432 235
Q ss_pred CcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023316 240 ATLFFSSATHNI----------NVNKIFKFIMAKLFNL 267 (284)
Q Consensus 240 ~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~ 267 (284)
++++.+||++|. |+..+|+.++..+...
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 789999999995 7999999999887544
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.66 E-value=4.9e-16 Score=131.98 Aligned_cols=150 Identities=19% Similarity=0.298 Sum_probs=97.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCc-----------c-------cccceeeeeEEEEE-----CCeEEEEEEEeCCCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERS-----------L-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGD 158 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~-----------~-------~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~ 158 (284)
+|+++|+.++|||||+.+|+....... + ...|..+....+.+ ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999987543311 0 11233332222222 356788999999999
Q ss_pred cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC---CCCCCc--c--cchHHHH
Q 023316 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV---RLPPDL--Q--WTIATQA 231 (284)
Q Consensus 159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~---~~~~~~--~--~~~~~~~ 231 (284)
++|......++..+|++|+|+|+++..++.. ..|+..+... ..|.++|+||+|+.. .++... . ....++.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~~--~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAILE--GLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9998888889999999999999988776643 3455544332 345589999999620 011111 0 0113344
Q ss_pred HHHHHHcCC-------c----EEEEcCCCCcCHH
Q 023316 232 RAYAKAMKA-------T----LFFSSATHNINVN 254 (284)
Q Consensus 232 ~~~a~~~~~-------~----~~~~Sa~~~~~v~ 254 (284)
..+++.++. | +++.|++.+-++.
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 455555433 2 6778998776543
No 215
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=1.3e-15 Score=147.41 Aligned_cols=154 Identities=15% Similarity=0.127 Sum_probs=103.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC---CCCCc-ccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN---EQERS-LQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~---~~~~~-~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
-|.++|+.++|||||+++|.+. .+... ...++.+.....+.. ++. .+.+|||+|+++|.......+.++|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~--~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR--VLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc--EEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 4789999999999999999863 33322 223333333223323 333 3789999999998766666788999999
Q ss_pred EEEeCCCh---hhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC---CcEEEEcCCC
Q 023316 177 FMFDLTSR---CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK---ATLFFSSATH 249 (284)
Q Consensus 177 lv~d~~~~---~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~Sa~~ 249 (284)
+|+|+++. .+.+.+ ..+.. . ..+. |+|+||+|+. +++......++..++....+ ++++++||++
T Consensus 80 LVVda~eg~~~qT~ehl----~il~~-l-gi~~iIVVlNKiDlv---~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~t 150 (614)
T PRK10512 80 LVVACDDGVMAQTREHL----AILQL-T-GNPMLTVALTKADRV---DEARIAEVRRQVKAVLREYGFAEAKLFVTAATE 150 (614)
T ss_pred EEEECCCCCcHHHHHHH----HHHHH-c-CCCeEEEEEECCccC---CHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 99999873 333332 22222 1 2343 6999999962 22211222455666665554 6899999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.|++++++.+......
T Consensus 151 G~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 151 GRGIDALREHLLQLPER 167 (614)
T ss_pred CCCCHHHHHHHHHhhcc
Confidence 99999999999875543
No 216
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.66 E-value=1.4e-15 Score=146.52 Aligned_cols=158 Identities=12% Similarity=0.122 Sum_probs=101.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-----ccceeeeeEEEEE--CCeEE----------EEEEEeCCCCcCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-----MAGLNLINKTLMV--QGARI----------AFSIWDVGGDSRS 161 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-----t~~~~~~~~~~~~--~~~~~----------~l~l~Dt~G~e~~ 161 (284)
+...|+++|++++|||||++++.+.......+ ++|.++....... .+..+ .+.+|||+|++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 45679999999999999999998765442222 4454433222110 11111 1679999999999
Q ss_pred cccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-----------cch
Q 023316 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-----------WTI 227 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-----------~~~ 227 (284)
..++...++.+|++++|+|+++ +.+++.+..+ .. ...|.|+++||+|+......... ..+
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 9988888999999999999987 5666554422 22 23455899999996311110000 000
Q ss_pred HH-------HHHHHHHHc---------------CCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 228 AT-------QARAYAKAM---------------KATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 228 ~~-------~~~~~a~~~---------------~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
.+ +...+.... .++++.+||.+|+|+++++..+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 011111111 257899999999999999988764
No 217
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-15 Score=130.45 Aligned_cols=180 Identities=14% Similarity=0.216 Sum_probs=116.9
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------
Q 023316 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------ 163 (284)
Q Consensus 93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------ 163 (284)
+...+...+.|+|||.||||||||.|.+++.+.. +... |+.-.. .-.+.....++.++||+|.-.-..
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhhHHH
Confidence 3455667899999999999999999999999877 2222 443222 112233345678999999654211
Q ss_pred ------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC----------CCCCcccch
Q 023316 164 ------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR----------LPPDLQWTI 227 (284)
Q Consensus 164 ------~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~----------~~~~~~~~~ 227 (284)
-.+..+..||.+++|+|+++....-. ...+..++.+. ..|-|+|.||+|...+ +.+.. .
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~---l 216 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGE---L 216 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccc---c
Confidence 12235678999999999986332211 24455565553 2334999999994211 00000 0
Q ss_pred HHHHHHHHHHc-------------CC----cEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023316 228 ATQARAYAKAM-------------KA----TLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 280 (284)
Q Consensus 228 ~~~~~~~a~~~-------------~~----~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 280 (284)
.....++.++. |+ .+|.+||++|+||+++-++++..+...+|+......++++
T Consensus 217 ~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 217 AKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred chhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence 01011222211 23 2677999999999999999999999999999887776654
No 218
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.64 E-value=1.7e-15 Score=140.67 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=100.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc-c--cccceeeeeEEE----------------EEC--C----eEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---RS-L--QMAGLNLINKTL----------------MVQ--G----ARIA 149 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~-~--~t~~~~~~~~~~----------------~~~--~----~~~~ 149 (284)
...++|+++|+.++|||||+.+|.+.... .+ . .|+...+....+ .++ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 44699999999999999999999653111 11 1 122221111010 011 1 1257
Q ss_pred EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh----hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 225 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~----s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~ 225 (284)
+.+|||+|+++|..........+|++++|+|+++.. +.+.+. .+.. ....++|+|+||+|+. +++...
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-~~i~~iiVVlNK~Dl~---~~~~~~ 158 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-IGIKNIVIVQNKIDLV---SKERAL 158 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-cCCCcEEEEEEeeccc---cchhHH
Confidence 889999999987654444456779999999998643 333322 2222 1222457999999972 222111
Q ss_pred chHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 226 TIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 226 ~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
...++...+++.. +++++++||++|.|++++|+.|...+.
T Consensus 159 ~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 159 ENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 1234455555432 578999999999999999999988764
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.61 E-value=8.1e-15 Score=126.42 Aligned_cols=112 Identities=13% Similarity=0.156 Sum_probs=78.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--------------Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
+|+++|..|+|||||+++++...-. +.. ...|..+......+......+.+|||+|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999999753110 000 11223333333333334467889999999999888
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+..+++.+|++++|+|+++.... ....|+..+.+. ..|.++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence 88899999999999999887553 334555555443 34558999999964
No 220
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.61 E-value=1.9e-14 Score=128.77 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=58.3
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGGD- 158 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~l~Dt~G~- 158 (284)
|.++|.+|||||||++++++.... ..+|.++.+....... +++ ..+.+++|||+|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999998866 5555322221111111 233 3477999999998
Q ss_pred ---cCCccccccc---ccCCcEEEEEEeCC
Q 023316 159 ---SRSFDHVPIA---CKDAVAILFMFDLT 182 (284)
Q Consensus 159 ---e~~~~~~~~~---~~~ad~iilv~d~~ 182 (284)
+++..+...| +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5566676665 89999999999997
No 221
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.60 E-value=1.7e-14 Score=121.16 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccce-eeeeEEEEEC-CeEEEEEEEeCCCCcCCccccccc-----ccC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGL-NLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIA-----CKD 171 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~-~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~-----~~~ 171 (284)
++||+++|++|+|||||+|.+.+.... ....+++. +.......+. +....+.+|||+|..........| +.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 479999999999999999999987654 22233331 1110101111 112357899999986543322233 678
Q ss_pred CcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCC------cccchHHHHHHH----HHHcC-
Q 023316 172 AVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAY----AKAMK- 239 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~------~~~~~~~~~~~~----a~~~~- 239 (284)
+|+++++.| .+|.+.. .|++.+.+. ..+.++|+||+|+...-... .+....++.++. ....+
T Consensus 81 ~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~ 154 (197)
T cd04104 81 YDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGV 154 (197)
T ss_pred cCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCC
Confidence 899888843 2233333 566666664 34558999999972110000 011112222222 22222
Q ss_pred --CcEEEEcCC--CCcCHHHHHHHHHHHHhCCc
Q 023316 240 --ATLFFSSAT--HNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 240 --~~~~~~Sa~--~~~~v~~lf~~l~~~i~~~~ 268 (284)
-++|.+|+. .+.++..+.+.+...+.+..
T Consensus 155 ~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 155 SEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 367889998 56899999999988876543
No 222
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.59 E-value=1.4e-14 Score=127.65 Aligned_cols=142 Identities=12% Similarity=0.186 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-C----------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------ 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~----------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------ 162 (284)
.++|+|+|.+|+|||||+|++++..+. . ..+|++.+.....+..+|..+.+.+|||+|...+.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 689999999999999999999998865 2 12355666666677778888999999999954321
Q ss_pred --------------------cccccccc--CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316 163 --------------------DHVPIACK--DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL 219 (284)
Q Consensus 163 --------------------~~~~~~~~--~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~ 219 (284)
..+...+. .+|+++++.+.+... +... ...++.+. ...+.|+|+||+|+ +
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~~v~vi~VinK~D~---l 156 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---KRVNIIPVIAKADT---L 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---ccCCEEEEEECCCc---C
Confidence 11213444 356666666655421 2111 23334343 23455899999996 3
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 220 PPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
.........+...+.++.+++++|.....
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 33222334667788888899999876653
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=1.1e-14 Score=124.20 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=90.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC---------------------------CCC-----cccccceeeeeEEEEECCeEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE---------------------------QER-----SLQMAGLNLINKTLMVQGARIA 149 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~---------------------------~~~-----~~~t~~~~~~~~~~~~~~~~~~ 149 (284)
+|+++|..++|||||+.+|+... +.. ....+..+.....+..++ ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~--~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK--YR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC--eE
Confidence 48999999999999999995321 000 011223333334444444 56
Q ss_pred EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC-CCC
Q 023316 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR-LPP 221 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-------s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~-~~~ 221 (284)
+.+|||+|+..|.......++.+|++|+|+|+++.. ..+....| ..+. .....+.|+++||+|+... .++
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccH
Confidence 789999999887665556678899999999998842 11222222 2222 2222344689999996211 001
Q ss_pred CcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHH
Q 023316 222 DLQWTIATQARAYAKAMK-----ATLFFSSATHNINVN 254 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~ 254 (284)
.......+++..+.+..+ ++++.+||++|.|++
T Consensus 157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 111122344444455543 569999999999987
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=3.1e-14 Score=121.75 Aligned_cols=153 Identities=11% Similarity=0.133 Sum_probs=94.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCccc------------------------ccceeeee---------------EEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQ------------------------MAGLNLIN---------------KTLM 142 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~------------------------t~~~~~~~---------------~~~~ 142 (284)
||+++|+.++|||||+.+|..+.+..... ..|.+... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999766541100 01111110 1111
Q ss_pred ECCeEEEEEEEeCCCCcCCcccccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 143 VQGARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 143 ~~~~~~~l~l~Dt~G~e~~~~~~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
.. ...+.+.||+|+++|.......+ ..+|++++|.|+....+-.+ ..++..+... ..|+|+|.||+|+ .+
T Consensus 81 ~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~~--~ip~ivvvNK~D~---~~ 152 (224)
T cd04165 81 KS--SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALAL--NIPVFVVVTKIDL---AP 152 (224)
T ss_pred eC--CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEECccc---cC
Confidence 12 24577999999998865443334 36899999999876543222 2333433332 3456899999996 22
Q ss_pred CCcccchHHHHHHHHHH--------------------------cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 221 PDLQWTIATQARAYAKA--------------------------MKATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~--------------------------~~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
........++...+.+. ..+++|.+||.+|+|++++...|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 22111223333333221 1248899999999999999887643
No 225
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=5.1e-14 Score=133.60 Aligned_cols=156 Identities=15% Similarity=0.106 Sum_probs=121.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--c
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--K 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~ 170 (284)
..+|+++|.||||||||.|++++.... .++|.++++-....+...+.. +++.|.+|.-.... ..+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 457999999999999999999999888 999999988888888888876 66999999765432 344454 3
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 250 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~ 250 (284)
+.|++|-|.|.+|.+- ++.-.++-+ .-..|.|++.|++|. ..++-+.-+.+++.+..|+|.+++||++|
T Consensus 81 ~~D~ivnVvDAtnLeR--nLyltlQLl---E~g~p~ilaLNm~D~------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLER--NLYLTLQLL---ELGIPMILALNMIDE------AKKRGIRIDIEKLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHH--HHHHHHHHH---HcCCCeEEEeccHhh------HHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence 6799999999998763 333223222 224556899999994 33444566778889999999999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023316 251 INVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~ 268 (284)
.|++++.+.+......+.
T Consensus 150 ~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 150 EGLEELKRAIIELAESKT 167 (653)
T ss_pred CCHHHHHHHHHHhccccc
Confidence 999999999887655443
No 226
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.56 E-value=7.1e-14 Score=117.05 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=95.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC-------C-----Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-------E-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~-------~-----~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
.++|+++|..++|||||+++|+.... . ... ..-|.........+......+.+.||+|...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975410 0 000 01233333333334334456779999999988776
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK--- 239 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~--- 239 (284)
....+..+|++++|+|++..-.-+. ...+..+... ..+ .|++.||+|+. .++. .....++.+.+.+..+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~---~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMV---DDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCC---CcHHHHHHHHHHHHHHHHHhcccc
Confidence 6777889999999999976433222 2233333332 234 36889999972 2221 1123455666666554
Q ss_pred --CcEEEEcCCCCcCHH
Q 023316 240 --ATLFFSSATHNINVN 254 (284)
Q Consensus 240 --~~~~~~Sa~~~~~v~ 254 (284)
++++.+||.+|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 689999999999853
No 227
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=6.8e-15 Score=116.05 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=117.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.-|++++|-.|+|||||++.+.+++.....||..+.. ..+.+.| +++..+|.+|+..-+..|..|+..+|++++.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTS--E~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lv 95 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYLV 95 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCCCcCCCh--HHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEeee
Confidence 3589999999999999999999998877777776553 3455555 66889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--------C---CcEEEEc
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--------K---ATLFFSS 246 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--------~---~~~~~~S 246 (284)
|+.|.+-|.+.+.-++.+.... ...|+++.+||+|......++.-+. ...+..+.-.. + +..+.||
T Consensus 96 da~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~-~l~l~~~t~~~~~v~~~~~~~rp~evfmcs 174 (193)
T KOG0077|consen 96 DAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRF-HLGLSNFTTGKGKVNLTDSNVRPLEVFMCS 174 (193)
T ss_pred ehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHH-HHHHHHHhcccccccccCCCCCeEEEEEEE
Confidence 9999999999887777765543 3456689999999533322211100 01111111111 1 2456799
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 023316 247 ATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i 264 (284)
...+.+..+.|.|+.+.+
T Consensus 175 i~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 175 IVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEccCccceeeeehhhhc
Confidence 999999999999887654
No 228
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.56 E-value=3.7e-14 Score=111.52 Aligned_cols=133 Identities=21% Similarity=0.273 Sum_probs=90.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-----CcccccccccCCcEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-----SFDHVPIACKDAVAIL 176 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-----~~~~~~~~~~~ad~ii 176 (284)
||+++|..|+|||||+++|.+.+. .+..|..+.+... +.||+|.-- |+.+. ....+||.++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~~~------------~IDTPGEyiE~~~~y~aLi-~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYYDN------------TIDTPGEYIENPRFYHALI-VTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEeccc------------EEECChhheeCHHHHHHHH-HHHhhCCEEE
Confidence 799999999999999999988665 2223444433322 458887422 11222 2235999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~ 255 (284)
++.|.+++.+.-. ..+... -..|+|-|.||+|+ +. .....+.++++.+..|+ ..|++|+.+|+|+++
T Consensus 69 ll~dat~~~~~~p-P~fa~~-----f~~pvIGVITK~Dl----~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASM-----FNKPVIGVITKIDL----PS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEE 136 (143)
T ss_pred EEecCCCCCccCC-chhhcc-----cCCCEEEEEECccC----cc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence 9999998754211 011111 24566899999996 21 12235678888888888 578899999999999
Q ss_pred HHHHH
Q 023316 256 IFKFI 260 (284)
Q Consensus 256 lf~~l 260 (284)
+.++|
T Consensus 137 L~~~L 141 (143)
T PF10662_consen 137 LKDYL 141 (143)
T ss_pred HHHHH
Confidence 99876
No 229
>PRK12735 elongation factor Tu; Reviewed
Probab=99.54 E-value=1.1e-13 Score=128.09 Aligned_cols=162 Identities=11% Similarity=0.121 Sum_probs=102.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC-------CCC-----Cc---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN-------EQE-----RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~-------~~~-----~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
...++|+++|..++|||||+++|++. .+. .. ....|.........+......+.++||+|+++|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 34789999999999999999999862 110 00 0022333333333343344567899999998876
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-- 239 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-- 239 (284)
......+..+|++++|+|+.+...-+. ...+..+... ..+.| ++.||+|+.+ .++......++++.+.+.++
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~~--gi~~iivvvNK~Dl~~--~~~~~~~~~~ei~~~l~~~~~~ 164 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFLNKCDMVD--DEELLELVEMEVRELLSKYDFP 164 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEecCCcc--hHHHHHHHHHHHHHHHHHcCCC
Confidence 655566789999999999987433222 2333333321 33445 6799999731 11111222456677776654
Q ss_pred ---CcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023316 240 ---ATLFFSSATHNI----------NVNKIFKFIMAKL 264 (284)
Q Consensus 240 ---~~~~~~Sa~~~~----------~v~~lf~~l~~~i 264 (284)
++++++||.+|. ++.++++.+...+
T Consensus 165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 678999999984 5677777776654
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.53 E-value=1.3e-13 Score=127.65 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=94.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC-------C-----CCcc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------Q-----ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-------~-----~~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
...++|+++|..++|||||+++|++.. + .... ...|.......+.++.....+.+|||+|+++|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 347899999999999999999997420 0 0000 012333333344454455667899999999986
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK- 239 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~- 239 (284)
.........+|++++|+|++.....+.. +.+..+... ..+++ ++.||+|+. +.+. .....++.+.+++.++
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~~--gi~~iIvvvNK~Dl~---~~~~~~~~~~~~i~~~l~~~~~ 163 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCEEEEEEEecccC---CHHHHHHHHHHHHHHHHHhcCC
Confidence 5555556788999999999874322222 222233322 34444 689999972 2211 1122456777777765
Q ss_pred ----CcEEEEcCCCCc
Q 023316 240 ----ATLFFSSATHNI 251 (284)
Q Consensus 240 ----~~~~~~Sa~~~~ 251 (284)
++++.+||.+|.
T Consensus 164 ~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 164 PGDDTPIIRGSALKAL 179 (394)
T ss_pred CccCccEEECcccccc
Confidence 789999999875
No 231
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.52 E-value=1.3e-13 Score=117.52 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=77.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--Ccc-------------cccceeee--eEEEEEC--------CeEEEEEEEeCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSL-------------QMAGLNLI--NKTLMVQ--------GARIAFSIWDVG 156 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~-------------~t~~~~~~--~~~~~~~--------~~~~~l~l~Dt~ 156 (284)
+|+++|..++|||||+.+|+...-. ... ..-|.... ...+.+. +..+.+.+|||+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999754211 000 01122211 1122232 447889999999
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|+++|......+++.+|++|+|+|+++..+.+....|.. +.. ...|+|+++||+|+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~ 137 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDR 137 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCc
Confidence 999999999999999999999999998776655333332 222 23456899999996
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=2.2e-13 Score=126.01 Aligned_cols=162 Identities=10% Similarity=0.088 Sum_probs=102.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC------------Cc---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE------------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~------------~~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
...++|+++|..++|||||+.+|++.... .. ....|.........+......+.++||+|+++|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 34789999999999999999999863110 00 0022333333334444344567799999999886
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK- 239 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~- 239 (284)
.........+|++++|+|++....-+. ...+..+... ..+. |++.||+|+. +.+. .....++...+.+..+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~~---~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDLV---DDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCCc---chHHHHHHHHHHHHHHHHHhCC
Confidence 555555678999999999986432222 2222333322 3443 6889999962 1111 1112446666666655
Q ss_pred ----CcEEEEcCCCCc--------CHHHHHHHHHHHHh
Q 023316 240 ----ATLFFSSATHNI--------NVNKIFKFIMAKLF 265 (284)
Q Consensus 240 ----~~~~~~Sa~~~~--------~v~~lf~~l~~~i~ 265 (284)
++++.+||++|. ++.++++.+...+.
T Consensus 164 ~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 164 PGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 579999999983 57788877776654
No 233
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.51 E-value=1.6e-14 Score=111.29 Aligned_cols=112 Identities=15% Similarity=0.092 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCC-cc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQER-SL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
+||+++|+.|+|||+|+.++....+.. .. +|.+ +......+++.++++++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 589999999999999999998777752 22 3333 333345577899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|+.+++++++.+ |...+...+...++ ++++||.|+. ++. .+++..+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~----~~~---------~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE----EER---------QVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH----hhC---------cCCHHHHHHHHHHhCCCcchhh
Confidence 999999999876 88877665544455 6899999951 111 1222223356678899999884
No 234
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=3.7e-13 Score=110.63 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCC----------cCCccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHVPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------e~~~~~~~~~ 168 (284)
...|+++|.+|||||||+|.+++.+-- ....|.|.+.....+.+++. +.+.|.+|- +.+..+...|
T Consensus 24 ~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y 100 (200)
T COG0218 24 LPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEEY 100 (200)
T ss_pred CcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence 567999999999999999999997633 33334555444445556554 568899993 3455566667
Q ss_pred cc---CCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----cC
Q 023316 169 CK---DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK 239 (284)
Q Consensus 169 ~~---~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----~~ 239 (284)
+. +-.+++++.|+...-.-. ++.+|+.+. ..++++|+||+|. ++.... .......++. ..
T Consensus 101 L~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DK---i~~~~~---~k~l~~v~~~l~~~~~ 169 (200)
T COG0218 101 LEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADK---LKKSER---NKQLNKVAEELKKPPP 169 (200)
T ss_pred HhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEcccc---CChhHH---HHHHHHHHHHhcCCCC
Confidence 64 356888888987654432 334565543 4455899999995 332111 2222333332 23
Q ss_pred Cc--EEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 240 AT--LFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 240 ~~--~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
.. ++..|+.++.|++++...|...+.
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhh
Confidence 33 677899999999999998887664
No 235
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.50 E-value=4.5e-13 Score=117.55 Aligned_cols=112 Identities=12% Similarity=0.114 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-C----------------ccc----ccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-R----------------SLQ----MAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~----------------~~~----t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
-+|+++|.+|+|||||+++++...-. . ++. ..+..+......+......+.+|||+|++
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 46999999999999999999742110 0 000 11333334444444555778899999999
Q ss_pred CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
+|......+++.+|++|+|+|.++..... ...|+..+... +.|.++++||+|+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~~--~~P~iivvNK~D~ 135 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRLR--GIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHhc--CCCEEEEEECCcc
Confidence 98877777889999999999998764322 23444443332 3455899999995
No 236
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.49 E-value=1.5e-12 Score=113.62 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-------cccccccCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HVPIACKDA 172 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-------~~~~~~~~a 172 (284)
..++++|.|+||||||++++++.+.. ..|+-++.+.....+.++|.. +|+.|++|.-.-.+ ..-...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 57999999999999999999999888 889977777778888888855 77999998654222 222356899
Q ss_pred cEEEEEEeCCChhh-HHHHHHHHHH--------------------------------------------HHhHCC-----
Q 023316 173 VAILFMFDLTSRCT-LNSIVGWYSE--------------------------------------------ARKWNQ----- 202 (284)
Q Consensus 173 d~iilv~d~~~~~s-~~~~~~~~~~--------------------------------------------l~~~~~----- 202 (284)
|++++|.|+....+ .+-+.+.++. ..-++.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986554 3222222211 100000
Q ss_pred ----------------CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 203 ----------------TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 203 ----------------~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
.-.| +.|.||+|+ .. .++...+.+.. .++.+||+.+.|++++.+.|.+.+
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~----~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDL----PG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccc----cC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhh
Confidence 0134 899999996 11 23444444443 789999999999999999999877
No 237
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.49 E-value=8.7e-13 Score=121.54 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=59.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEE---------------------ECC-eEEEEEEEeCCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGG 157 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~l~Dt~G 157 (284)
+||.++|.||||||||+|++++..+. ..++.++.+....... .++ ..+.+++|||+|
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999998876 5665332222222211 112 236789999999
Q ss_pred C----cCCccccccc---ccCCcEEEEEEeCC
Q 023316 158 D----SRSFDHVPIA---CKDAVAILFMFDLT 182 (284)
Q Consensus 158 ~----e~~~~~~~~~---~~~ad~iilv~d~~ 182 (284)
. ++...+...| ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5 3455666677 78999999999996
No 238
>COG2262 HflX GTPases [General function prediction only]
Probab=99.49 E-value=9.3e-13 Score=118.44 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=111.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCc--cccccc------c
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSF--DHVPIA------C 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~--~~~~~~------~ 169 (284)
-..|.++|-.|+|||||+|++++.... .+.-..+.+...+.+.+.+ .. +.+-||.|.-+-- .+...| .
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHHHHHh
Confidence 467999999999999999999987655 4444445556667777764 44 5588999976521 222322 3
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
..+|.+++|.|++++.-.+.+..-.+-+.+..-..+| |+|.||+|+ +++.. .........+ ..+.+||+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~---~~~~~------~~~~~~~~~~-~~v~iSA~ 339 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL---LEDEE------ILAELERGSP-NPVFISAK 339 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc---cCchh------hhhhhhhcCC-CeEEEEec
Confidence 6899999999999997766666555555555444455 899999996 32221 1112222222 58899999
Q ss_pred CCcCHHHHHHHHHHHHhCCcccc
Q 023316 249 HNINVNKIFKFIMAKLFNLPWTV 271 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~~~~~ 271 (284)
+|.|++.+++.|...+.......
T Consensus 340 ~~~gl~~L~~~i~~~l~~~~~~~ 362 (411)
T COG2262 340 TGEGLDLLRERIIELLSGLRTEV 362 (411)
T ss_pred cCcCHHHHHHHHHHHhhhcccce
Confidence 99999999999998887554333
No 239
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=3e-13 Score=123.51 Aligned_cols=159 Identities=17% Similarity=0.165 Sum_probs=108.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-Cccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDH--------VPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~--------~~~~ 168 (284)
.++|+++|.||||||||+|.|.+.+.. .+.+.++.|.....++++|.+ +.+.||||..+ ..+. ....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHHH
Confidence 589999999999999999999999877 778888888888888889966 45899999876 2221 1235
Q ss_pred ccCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhHC-------CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC
Q 023316 169 CKDAVAILFMFDLT--SRCTLNSIVGWYSEARKWN-------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 239 (284)
Q Consensus 169 ~~~ad~iilv~d~~--~~~s~~~~~~~~~~l~~~~-------~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~ 239 (284)
+..+|++++|+|+. +-++-..+...++....-. ...+.|++.||+|+...+++- ... ...+....+
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~-~~~----~~~~~~~~~ 420 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEM-TKI----PVVYPSAEG 420 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccc-cCC----ceecccccc
Confidence 67999999999993 3333333334444443211 234568999999974333221 111 111111111
Q ss_pred ---C-cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 240 ---A-TLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 240 ---~-~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
. ...++|+++++|++++...+...+.
T Consensus 421 ~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 421 RSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred CcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 2 3445999999999999888877654
No 240
>PRK13351 elongation factor G; Reviewed
Probab=99.47 E-value=3.6e-13 Score=132.94 Aligned_cols=112 Identities=13% Similarity=0.165 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC-------------C-Cccc---ccceeee--eEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-------------E-RSLQ---MAGLNLI--NKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~-------------~-~~~~---t~~~~~~--~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|..++|||||+++|+...- . +..+ ..+..+. ...+..+ ...+.+|||+|+.+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~d 85 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD--NHRINLIDTPGHID 85 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC--CEEEEEEECCCcHH
Confidence 57999999999999999999975310 0 0000 1111221 2233333 46788999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
|...+..+++.+|++|+|+|.++..+.+....|. .+... ..|.++++||+|+.
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~~--~~p~iiviNK~D~~ 138 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADRY--GIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHhc--CCCEEEEEECCCCC
Confidence 9988899999999999999999887776655553 33332 34558999999964
No 241
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=113.57 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----cccccc---ccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPI---ACK 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~---~~~ 170 (284)
..-|+|.|.||||||||++++.+.+.. .+||-|+-.++...+..++ ..+|+.||+|.-+. +.+-.+ .++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 456999999999999999999999998 8999554445555555554 45789999996431 222221 122
Q ss_pred -CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEc
Q 023316 171 -DAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSS 246 (284)
Q Consensus 171 -~ad~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~S 246 (284)
-.+++|+++|.+.. .+.+....++++++..-. .|.++|.||+|+ ... ...+++......-+ .....++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~----~~~---e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI----ADE---EKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc----cch---hHHHHHHHHHHhhcccccccee
Confidence 35788999998754 467777788999988765 566899999995 211 11233333333334 3467788
Q ss_pred CCCCcCHHHHHHHHHHHHhCC
Q 023316 247 ATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~ 267 (284)
+..+.+++.+-..+.......
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred eeehhhHHHHHHHHHHHhhch
Confidence 888888887776666654433
No 242
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.44 E-value=5.3e-13 Score=123.89 Aligned_cols=150 Identities=15% Similarity=0.135 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------c---------------------cccceeeeeEEEEECCe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS------------L---------------------QMAGLNLINKTLMVQGA 146 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------~---------------------~t~~~~~~~~~~~~~~~ 146 (284)
++|+++|..++|||||+.+|+...-. .. . ..+..+.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 58999999999999999999643211 00 0 011123322233333
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 226 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~ 226 (284)
...+.++||+|+++|.......+..+|++|+|+|+.....-+....|. .+... ...+.|++.||+|+.+. +++....
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~-~~~~iivviNK~D~~~~-~~~~~~~ 155 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL-GIRHVVLAVNKMDLVDY-DEEVFEN 155 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc-CCCcEEEEEEecccccc-hHHHHHH
Confidence 346789999999998655556788999999999987653322222221 12221 22234789999996311 0110111
Q ss_pred hHHHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023316 227 IATQARAYAKAMK---ATLFFSSATHNINVNK 255 (284)
Q Consensus 227 ~~~~~~~~a~~~~---~~~~~~Sa~~~~~v~~ 255 (284)
..++...+.+..+ ++++.+||.+|+|+++
T Consensus 156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 2344444555554 4699999999999875
No 243
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.44 E-value=5.9e-13 Score=125.66 Aligned_cols=156 Identities=12% Similarity=0.083 Sum_probs=92.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------------ccc-------------------cceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS------------LQM-------------------AGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------------~~t-------------------~~~~~~~~~~~~~~ 145 (284)
...++|+++|..++|||||+.+++...-. .. .-+ -|.........+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44699999999999999999999754311 00 000 01112222222233
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 225 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~ 225 (284)
....+.+|||+|+++|.......+..+|++|+|+|++....-.....|. .+.... ..+.|++.||+|+... +++...
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~lg-~~~iIvvvNKiD~~~~-~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATLLG-IKHLVVAVNKMDLVDY-SEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHHhC-CCceEEEEEeeccccc-hhHHHH
Confidence 3456789999999988654444578999999999997643211111111 111111 2244789999996211 111011
Q ss_pred chHHHHHHHHHHcC----CcEEEEcCCCCcCHHHH
Q 023316 226 TIATQARAYAKAMK----ATLFFSSATHNINVNKI 256 (284)
Q Consensus 226 ~~~~~~~~~a~~~~----~~~~~~Sa~~~~~v~~l 256 (284)
...++...+.+..+ ++++.+||++|.|+.++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12334444444443 67999999999999764
No 244
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.5e-12 Score=117.76 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=122.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC-----------CCcc---cccceeeeeEEE--EE-CCeEEEEEEEeCCCCcCCc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-----------ERSL---QMAGLNLINKTL--MV-QGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~-----------~~~~---~t~~~~~~~~~~--~~-~~~~~~l~l~Dt~G~e~~~ 162 (284)
.-++.+|-.---|||||..+++.-.= .+.. .--|+++...+. .+ +|+.+.+.+.||+|+.+|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 45789999999999999999964211 0111 112444444332 22 5788999999999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 242 (284)
......+.-|+++|+|+|.+..-.-+.+..++..+.. +-.+|.|.||+| +|..+...+..+..++....+.+.
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKID----lp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKID----LPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccC----CCCCCHHHHHHHHHHHhcCCccce
Confidence 9999999999999999999877665666666555533 445689999999 455555555677777766667789
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 243 FFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
+.+||++|.|+.++|+.+++.+...+-
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 999999999999999999999866543
No 245
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.43 E-value=2e-12 Score=123.21 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=78.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc--CCCC--Cc--------------c---cccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG 157 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 157 (284)
...+|+++|..++|||||+++|+. +... .. . ...|..+......+....+.+.+|||+|
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 356899999999999999999963 1100 00 0 0113333333333333446788999999
Q ss_pred CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+++|......+++.+|++|+|+|+++...- ....++...... +.|.|+++||+|+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~~--~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRLR--DTPIFTFINKLDRD 144 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHhc--CCCEEEEEECCccc
Confidence 999988778889999999999999875432 233444444332 34558999999964
No 246
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.43 E-value=2.6e-12 Score=98.40 Aligned_cols=105 Identities=12% Similarity=0.199 Sum_probs=70.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc---------cccccc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---------VPIACK 170 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~---------~~~~~~ 170 (284)
||+|+|.+|+|||||+|.+++.... ...+..+.......+.+++..+ .++||+|...-... ....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6999999999999999999986543 4444333333335556677664 59999997653111 122347
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK 212 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK 212 (284)
.+|++++|+|..++.. +....+++.++ ...+.++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999999877422 23334445552 34455899998
No 247
>CHL00071 tufA elongation factor Tu
Probab=99.42 E-value=3.7e-12 Score=118.46 Aligned_cols=150 Identities=9% Similarity=0.071 Sum_probs=93.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC---------------CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
...++|+++|..++|||||+++|++..-. .....-|.........+......+.+.||+|+.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 44699999999999999999999864110 000012222222223333334456799999998876
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC-
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK- 239 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~- 239 (284)
......+..+|++++|+|+.....-+. ...+..+... ..| .|++.||+|+. +.+. .....+++..+.+..+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~~--g~~~iIvvvNK~D~~---~~~~~~~~~~~~l~~~l~~~~~ 163 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQV--GVPNIVVFLNKEDQV---DDEELLELVELEVRELLSKYDF 163 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEccCCC---CHHHHHHHHHHHHHHHHHHhCC
Confidence 666666789999999999976433222 2233333322 234 35889999962 2111 1122456666666654
Q ss_pred ----CcEEEEcCCCCcCH
Q 023316 240 ----ATLFFSSATHNINV 253 (284)
Q Consensus 240 ----~~~~~~Sa~~~~~v 253 (284)
++++.+||.+|.|+
T Consensus 164 ~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 164 PGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCcceEEEcchhhcccc
Confidence 67899999998753
No 248
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.41 E-value=3.4e-12 Score=119.33 Aligned_cols=180 Identities=21% Similarity=0.396 Sum_probs=128.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCC----c
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V 173 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~a----d 173 (284)
.-.|+|+|+.++|||||+.+|.+.+ ...++.|.+|....+.-+ +....+.+|-..|...+..+.+..+... -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 3579999999999999999997654 334466776654443222 2335689999998777777776655432 4
Q ss_pred EEEEEEeCCChhhH-HHHHHHHHHHHhHC------------------------------C-----------------C--
Q 023316 174 AILFMFDLTSRCTL-NSIVGWYSEARKWN------------------------------Q-----------------T-- 203 (284)
Q Consensus 174 ~iilv~d~~~~~s~-~~~~~~~~~l~~~~------------------------------~-----------------~-- 203 (284)
.+|+|.|.+.+..+ +++..|+..++++- . .
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 78899999999764 56677766543210 0 0
Q ss_pred -------------Cce-EEEEeCCCCCCCCCCCcc------cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 204 -------------AIP-ILIGTKFDDFVRLPPDLQ------WTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 204 -------------~~~-Ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++| +||++|+|.+..+..+.. ..+.+-++.+|-.+|+.++.||++...|++-++..|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 245 699999996544433221 123566788999999999999999999999999999999
Q ss_pred HhCCccccccccCCCCCC
Q 023316 264 LFNLPWTVKRNLTIGEPI 281 (284)
Q Consensus 264 i~~~~~~~~~~~~~~~~~ 281 (284)
++..+.+...+....+.+
T Consensus 263 l~~~~f~~~~~vv~~d~i 280 (472)
T PF05783_consen 263 LYGFPFKTPAQVVERDAI 280 (472)
T ss_pred hccCCCCCCceeeccccc
Confidence 999998866666555444
No 249
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.41 E-value=4e-12 Score=110.71 Aligned_cols=175 Identities=22% Similarity=0.367 Sum_probs=124.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEE--EECCeEEEEEEEeCCCCcCCcccccccccCC----c
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDHVPIACKDA----V 173 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a----d 173 (284)
.-.|+|+|+.++|||||+.++.+.+-. .+..|..|..-.+ ...+....+.+|-..|.--...+....+... -
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~--KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETV--KKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccccc--CCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 347999999999999999999887632 2344554433222 1233446678898888876666666555432 3
Q ss_pred EEEEEEeCCChhh-HHHHHHHHHHHHhHCC--------------------------------------------------
Q 023316 174 AILFMFDLTSRCT-LNSIVGWYSEARKWNQ-------------------------------------------------- 202 (284)
Q Consensus 174 ~iilv~d~~~~~s-~~~~~~~~~~l~~~~~-------------------------------------------------- 202 (284)
.+|++.|++++.+ ++.+++|..-++++..
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 6788999999966 5778888876654210
Q ss_pred -----------CCce-EEEEeCCCCCCCCCCCcc------cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 203 -----------TAIP-ILIGTKFDDFVRLPPDLQ------WTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 203 -----------~~~~-Ilv~nK~Dl~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
-+++ +||.+|||.+..+..+.. .-+...++.||-.+|+..+.+|++...|++-+++.|++.+
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHh
Confidence 0245 699999996433222211 1235667899999999999999999999999999999999
Q ss_pred hCCccccccccC
Q 023316 265 FNLPWTVKRNLT 276 (284)
Q Consensus 265 ~~~~~~~~~~~~ 276 (284)
+..+.+......
T Consensus 290 yG~~fttpAlVV 301 (473)
T KOG3905|consen 290 YGFPFTTPALVV 301 (473)
T ss_pred cCcccCCcceEe
Confidence 998877655443
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=2.7e-12 Score=112.82 Aligned_cols=146 Identities=16% Similarity=0.134 Sum_probs=90.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC-C---cc-c--------------ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE-R---SL-Q--------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~-~---~~-~--------------t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
+|+++|.+|+|||||+++++...-. . .. . ..........+..++ ..+.+|||+|...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG--HKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC--EEEEEEECcCHHHHH
Confidence 4899999999999999999753211 0 00 0 111112222333444 567899999999887
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 242 (284)
.....+++.+|++++|+|.++.........|. .+... ..|.++++||+|+. .. ...+...++...++.+.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~~--~~p~iivvNK~D~~----~~---~~~~~~~~l~~~~~~~~ 148 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADEA--GIPRIIFINKMDRE----RA---DFDKTLAALQEAFGRPV 148 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEECCccC----CC---CHHHHHHHHHHHhCCCe
Confidence 77888899999999999999876655444443 33322 34558999999952 21 11233344444556554
Q ss_pred EE--EcCCCCcCHHHHHHH
Q 023316 243 FF--SSATHNINVNKIFKF 259 (284)
Q Consensus 243 ~~--~Sa~~~~~v~~lf~~ 259 (284)
+. +...++.++..+.+.
T Consensus 149 ~~~~ip~~~~~~~~~~vd~ 167 (268)
T cd04170 149 VPLQLPIGEGDDFKGVVDL 167 (268)
T ss_pred EEEEecccCCCceeEEEEc
Confidence 43 445666555444333
No 251
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.40 E-value=4e-12 Score=121.18 Aligned_cols=115 Identities=10% Similarity=0.096 Sum_probs=79.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc--CCCC--Cc--------------c---cccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG 157 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 157 (284)
...+|+++|.+++|||||+++++. +... .. . ...|..+......++...+.+.+|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 357999999999999999999853 1110 00 0 0224444444444554557788999999
Q ss_pred CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+..|......+++.+|++|+|+|.++... .....+++.++. ...|.|+++||+|+.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 99988877778999999999999987422 223345544433 234558999999963
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=2.2e-12 Score=121.53 Aligned_cols=150 Identities=10% Similarity=0.087 Sum_probs=95.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCC------CCC---------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE------QER---------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~------~~~---------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
....++|+++|..++|||||+++|++.. ... .....|.........+......+.++||+|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 3457899999999999999999998521 100 0112233322222223223346779999999998
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM- 238 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~- 238 (284)
.......+..+|++++|+|+++...-+. .+++..+... ..+ .|++.||+|+. +.+. .....++...+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl~---~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQV---DDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEeccccc---CHHHHHHHHHHHHHHHHHhcC
Confidence 7666666789999999999886543332 3333334332 334 36899999973 2111 122344666666664
Q ss_pred ----CCcEEEEcCCCCcC
Q 023316 239 ----KATLFFSSATHNIN 252 (284)
Q Consensus 239 ----~~~~~~~Sa~~~~~ 252 (284)
.++++.+||.++.|
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 46789999998854
No 253
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=2.3e-12 Score=120.74 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=99.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC---------------------------CCccc---ccceeeeeEEEEECCeE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ---------------------------ERSLQ---MAGLNLINKTLMVQGAR 147 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~---------------------------~~~~~---t~~~~~~~~~~~~~~~~ 147 (284)
...++|+++|..++|||||+-+|+...- .+..+ ..|..+......+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 3468999999999999999998863210 00000 11222222233334445
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhHCCCCce-EEEEeCCCCCC-C
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN-------SIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R 218 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~-------~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~-~ 218 (284)
..+.+.||+|+++|.......+..+|++|+|+|+++ ..|+ ...+.+..+. ....++ |++.||+|+.. .
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~--~~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF--TLGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHH--HcCCCcEEEEEEcccCCchh
Confidence 678899999999998888888999999999999986 2232 2222222221 123344 67899999620 0
Q ss_pred CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 255 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~ 255 (284)
...++-..+.++++.++++.| ++|+++||.+|+|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 001112223667788888776 6799999999999854
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.39 E-value=2.5e-12 Score=125.85 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=91.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-C-c----------cc----------------------ccceeeeeEEEEEC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R-S----------LQ----------------------MAGLNLINKTLMVQ 144 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-~----------~~----------------------t~~~~~~~~~~~~~ 144 (284)
..++|+++|.+++|||||+++++...-. . . .. .++.+.....+..+
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3589999999999999999999864321 1 0 00 11122222222333
Q ss_pred CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
+ ..+.++||+|+++|.......+..+|++|+|+|++....-+.... +..+... ...+.||+.||+|+.+. +++..
T Consensus 103 ~--~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~-~~~~iivvvNK~D~~~~-~~~~~ 177 (632)
T PRK05506 103 K--RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIASLL-GIRHVVLAVNKMDLVDY-DQEVF 177 (632)
T ss_pred C--ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHHHHh-CCCeEEEEEEecccccc-hhHHH
Confidence 3 456799999999876544456789999999999976532221111 1122222 12334789999996210 01111
Q ss_pred cchHHHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023316 225 WTIATQARAYAKAMK---ATLFFSSATHNINVNK 255 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~---~~~~~~Sa~~~~~v~~ 255 (284)
....++...+.+.++ ++++.+||++|.|+.+
T Consensus 178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 112344555555655 4589999999999874
No 255
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.38 E-value=1.9e-11 Score=102.39 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Ccc--cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------c---cc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------H---VP 166 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~---~~ 166 (284)
++|+++|.+|+|||||+|.+++.+.. ... +..+.+.......+++. .+.++||+|...... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999998754 221 22333333334445665 467999999765421 1 11
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccc----hHHHHHHHHHHcC
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWT----IATQARAYAKAMK 239 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~----~~~~~~~~a~~~~ 239 (284)
....+.|++|+|.|+.+ .+-++ ...++.+.+... -.+.|+|.|++|. +.+..... .....+.+.+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~---l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD---LEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc---cCCCcHHHHHHhccHHHHHHHHHhC
Confidence 23468899999999876 33222 233444443322 2355799999995 22221110 1244566666666
Q ss_pred CcEEEEc-----CCCCcCHHHHHHHHHHHHhC
Q 023316 240 ATLFFSS-----ATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 240 ~~~~~~S-----a~~~~~v~~lf~~l~~~i~~ 266 (284)
-.++..+ +..+.++.++++.+-..+..
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 6665544 45678899999999888865
No 256
>PRK00049 elongation factor Tu; Reviewed
Probab=99.38 E-value=9.8e-12 Score=115.10 Aligned_cols=161 Identities=9% Similarity=0.101 Sum_probs=99.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC------------Ccc---cccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~------------~~~---~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
...++|+++|..++|||||+++|++.... ... ..-|.........+......+.+.||+|+++|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 44789999999999999999999863110 000 012333333333343334557799999998876
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE-EEEeCCCCCCCCCCCc-ccchHHHHHHHHHHc--
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAM-- 238 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~-- 238 (284)
......+..+|++++|+|+.....-+. ..++..+... ..|.+ ++.||+|+. +.+. .....++...+....
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~~--g~p~iiVvvNK~D~~---~~~~~~~~~~~~i~~~l~~~~~ 163 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV--GVPYIVVFLNKCDMV---DDEELLELVEMEVRELLSKYDF 163 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHHc--CCCEEEEEEeecCCc---chHHHHHHHHHHHHHHHHhcCC
Confidence 655666789999999999976533222 2333333332 23444 689999962 2111 111234555555554
Q ss_pred ---CCcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023316 239 ---KATLFFSSATHNI----------NVNKIFKFIMAKL 264 (284)
Q Consensus 239 ---~~~~~~~Sa~~~~----------~v~~lf~~l~~~i 264 (284)
+++++.+||.++. ++.++++.|...+
T Consensus 164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 3688999999875 3556666665543
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.36 E-value=6.3e-13 Score=109.00 Aligned_cols=116 Identities=18% Similarity=0.263 Sum_probs=69.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccc---cccCCcEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAILF 177 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~---~~~~ad~iil 177 (284)
-|+++|++|+|||+|..+|..+...........+. .+.+ +.....+.+.|++|+++.+..... +...+.++|+
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 58999999999999999999986654444332221 1112 223335779999999998763333 4789999999
Q ss_pred EEeCCC-hhhHHHHHHHHHHHHhH---CCCCce-EEEEeCCCCCCCCC
Q 023316 178 MFDLTS-RCTLNSIVGWYSEARKW---NQTAIP-ILIGTKFDDFVRLP 220 (284)
Q Consensus 178 v~d~~~-~~s~~~~~~~~~~l~~~---~~~~~~-Ilv~nK~Dl~~~~~ 220 (284)
|.|.+. ...+.++.+.+-.+... ....+| +|++||.|++...+
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 999874 44455555444444322 235666 48999999865444
No 258
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.36 E-value=6e-12 Score=109.10 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=76.6
Q ss_pred cCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH
Q 023316 159 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA 237 (284)
Q Consensus 159 e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~ 237 (284)
++|..+.+.+++++|++++|||++++. +|+.+.+|+..+.. ...++++|+||+||. ++ .....+.+..+. .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~----~~-~~~~~~~~~~~~-~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLL----DD-EDMEKEQLDIYR-N 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccC----CC-HHHHHHHHHHHH-H
Confidence 778899999999999999999999887 89999999987754 355668999999972 11 112234444444 5
Q ss_pred cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 238 MKATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 238 ~~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
.+.+++++||++|.|++++|+.+..
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 7899999999999999999988753
No 259
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.5e-11 Score=112.54 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.=|+++|.--.|||||+-.+-+.......+ .++-.+....+.++ +....+.+.||+|++.|..|+..-..-+|.++||
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILV 85 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILV 85 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEE
Confidence 458899999999999999997776652222 33333334444443 1223466999999999999999989999999999
Q ss_pred EeCCCh---hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316 179 FDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN 250 (284)
Q Consensus 179 ~d~~~~---~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~ 250 (284)
.|+++. ++.+++. .++ ....|.|++.||+|.. +.....+..+..+ .++.++ ..++.+||++|
T Consensus 86 Va~dDGv~pQTiEAI~----hak--~a~vP~iVAiNKiDk~----~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg 155 (509)
T COG0532 86 VAADDGVMPQTIEAIN----HAK--AAGVPIVVAINKIDKP----EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTG 155 (509)
T ss_pred EEccCCcchhHHHHHH----HHH--HCCCCEEEEEecccCC----CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCC
Confidence 999874 4444322 121 2244558999999964 2222112222222 133333 56889999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
+|+++++..+.-..
T Consensus 156 ~Gi~eLL~~ill~a 169 (509)
T COG0532 156 EGIDELLELILLLA 169 (509)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999887544
No 260
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.33 E-value=1.2e-11 Score=108.56 Aligned_cols=109 Identities=14% Similarity=0.116 Sum_probs=73.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC--C--C---------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ--E--R---------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~--~--~---------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
+|+++|.+++|||||+++++...- . . ....+..+.....+..++ ..+.+|||+|..+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD--HRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC--EEEEEEECCCcHHHH
Confidence 489999999999999999964210 0 0 001222222223344444 567799999999988
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
..+..+++.+|++|+|.|..+...-.. ..++..+.+. ..|.|++.||+|+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~ 128 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDR 128 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCC
Confidence 888889999999999999987543222 2333334332 3455899999996
No 261
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.32 E-value=2.9e-12 Score=106.67 Aligned_cols=170 Identities=17% Similarity=0.224 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCc--ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----cccccccccCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA 172 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~~~~~a 172 (284)
.-||+++|..|+||||+-..+..+....+ .++-++|+....+.+-| ++.+.+||++||+.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 35899999999999999777665543321 22333444444444433 356889999999963 33556678999
Q ss_pred cEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch----HHHHHHHHHHcCCcEEEE
Q 023316 173 VAILFMFDLTSRCTLNSI---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMKATLFFS 245 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~a~~~~~~~~~~ 245 (284)
+++++|||+...+-..++ ++-++.+.++.+.+.+....+|.|| ++.+.+..+ .+..+.+.+..++.++.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL---v~~d~r~~if~~r~~~l~~~s~~~~~~~f~T 159 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL---VQEDARELIFQRRKEDLRRLSRPLECKCFPT 159 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh---cccchHHHHHHHHHHHHHHhccccccccccc
Confidence 999999999887654444 4566777788888887889999998 444433333 334455555667788888
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCccccccc
Q 023316 246 SATHNINVNKIFKFIMAKLFNLPWTVKRN 274 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~ 274 (284)
|.. .+++-+++..+...+...+...+.+
T Consensus 160 siw-Detl~KAWS~iv~~lipn~~~~e~~ 187 (295)
T KOG3886|consen 160 SIW-DETLYKAWSSIVYNLIPNVSALESK 187 (295)
T ss_pred chh-hHHHHHHHHHHHHhhCCChHHHHHH
Confidence 875 5566677777777777666554443
No 262
>PLN03127 Elongation factor Tu; Provisional
Probab=99.31 E-value=5.8e-11 Score=111.29 Aligned_cols=161 Identities=10% Similarity=0.074 Sum_probs=96.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcC------CCC-----------CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGN------EQE-----------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~------~~~-----------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
....++|+++|..++|||||+++|.+. ... +....++.+. ....+......+.+.||+|++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence 345789999999999999999999632 110 0112233333 333344444567799999999
Q ss_pred CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCc-ccchHHHHHHHHHH
Q 023316 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKA 237 (284)
Q Consensus 160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~ 237 (284)
+|..........+|++++|.|.++...-+. .+.+..+... ..+. |++.||+|+. +.+. .....++..++...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDlv---~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDVV---DDEELLELVEMELRELLSF 209 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeeccC---CHHHHHHHHHHHHHHHHHH
Confidence 876544445668999999999876533222 2222223222 3343 5789999972 2111 11123344454443
Q ss_pred c-----CCcEEEEcCC---CCcC-------HHHHHHHHHHHHh
Q 023316 238 M-----KATLFFSSAT---HNIN-------VNKIFKFIMAKLF 265 (284)
Q Consensus 238 ~-----~~~~~~~Sa~---~~~~-------v~~lf~~l~~~i~ 265 (284)
. .++++.+||. ++.| +.++++.+...+.
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 3 3578888775 4555 6777777766543
No 263
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.30 E-value=2.9e-11 Score=113.42 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=95.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC--CC-------------------------Ccc---cccceeeeeEEEEECCeE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE-------------------------RSL---QMAGLNLINKTLMVQGAR 147 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--~~-------------------------~~~---~t~~~~~~~~~~~~~~~~ 147 (284)
...++|+++|..++|||||+.+++..- .. +.. ...|.........+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 346899999999999999999997521 00 000 011222222222333344
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh---H----HHHHHHHHHHHhHCCCCce-EEEEeCCCCCC-C
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---L----NSIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R 218 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s---~----~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~-~ 218 (284)
..+.|.||+|+++|.......+..+|++|+|+|.+...- | +..+.|. .+.. ...+. |++.||+|+.. .
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~-~~~~--~gi~~iiv~vNKmD~~~~~ 161 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL-LAFT--LGVKQMIVCINKMDDKTVN 161 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH-HHHH--cCCCeEEEEEEccccccch
Confidence 567899999999987766667889999999999986420 1 1112222 2222 13343 68999999411 0
Q ss_pred CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 255 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~ 255 (284)
.+++.-..+.++...+....+ ++++.+||.+|+|+.+
T Consensus 162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 111222233555666555544 5789999999999864
No 264
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=4.7e-11 Score=108.80 Aligned_cols=159 Identities=14% Similarity=0.171 Sum_probs=112.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-----------Ccc---cccceeeeeE--EEEE---CCeEEEEEEEeCCCCcCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-----------RSL---QMAGLNLINK--TLMV---QGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-----------~~~---~t~~~~~~~~--~~~~---~~~~~~l~l~Dt~G~e~~ 161 (284)
-+..++-.-.-|||||..|++...-. +.. .--|+++... .+.+ +|..+.+++.||+|+.+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 45778888899999999999643211 000 0113333322 3333 568899999999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA- 240 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~- 240 (284)
.-.....+..|.+.|+|+|.+..-.-+.+...|..+.. +--+|-|.||+|| |......+.+ +.-.-.|+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDL----P~Adpervk~---eIe~~iGid 159 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDL----PAADPERVKQ---EIEDIIGID 159 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccC----CCCCHHHHHH---HHHHHhCCC
Confidence 88888889999999999999987666666666666643 3344789999996 4333222233 33344565
Q ss_pred --cEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 241 --TLFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 241 --~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
..+.+|||+|.||+++++.++..+....-
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 46789999999999999999999866553
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.28 E-value=3.4e-11 Score=112.81 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=101.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC---CCccc---c--cceeeeeE--------EE---EEC-C-----------e
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ---ERSLQ---M--AGLNLINK--------TL---MVQ-G-----------A 146 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~---~~~~~---t--~~~~~~~~--------~~---~~~-~-----------~ 146 (284)
...+.|.++|.-..|||||+..|.+-.. ..+.. | .|...... .. ..+ + .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 4478999999999999999999986432 21111 2 12221100 00 000 0 0
Q ss_pred ----EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 147 ----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 147 ----~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
...+.+.|++|+++|..........+|++++|.|++... .-+.. +.+..+.. ..-.+.|+|.||+|+. +.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl~i~~~-lgi~~iIVvlNKiDlv---~~ 186 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHLAAVEI-MKLKHIIILQNKIDLV---KE 186 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHHHHHHH-cCCCcEEEEEeccccc---CH
Confidence 135789999999988666556678999999999998642 22221 22222221 1222347899999962 22
Q ss_pred CcccchHHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 222 DLQWTIATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+......++.+++.+. .+++++.+||++|+|++++++.|...+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 2111223444444433 3578999999999999999999887554
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.25 E-value=5.2e-11 Score=117.63 Aligned_cols=111 Identities=15% Similarity=0.126 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC----C-c--------------ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE----R-S--------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~----~-~--------------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
-.+|+++|..++|||||+++|+...-. . . ...++.+.....+..++ ..+.+|||+|+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG--HRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC--eEEEEEECCCCcc
Confidence 458999999999999999999642110 0 0 11223333444455554 5678999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|......+++.+|++|+|+|+++....+...-| ..+.+. ..|.|+++||+|+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~~--~~p~ivviNK~D~ 139 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANRY--EVPRIAFVNKMDK 139 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHHc--CCCEEEEEECCCC
Confidence 888888899999999999999886655544333 333332 3455899999996
No 267
>PRK13768 GTPase; Provisional
Probab=99.23 E-value=6.1e-11 Score=103.32 Aligned_cols=114 Identities=11% Similarity=0.043 Sum_probs=71.2
Q ss_pred EEEEEeCCCCcCC---cccccccccC-----CcEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 149 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 149 ~l~l~Dt~G~e~~---~~~~~~~~~~-----ad~iilv~d~~~~~s~~~~~--~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
.+.+||++|+.+. +..++.+++. ++++++++|.....+..+.. .|+........+.++|+|.||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~-- 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL-- 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc--
Confidence 5789999998773 3444333332 89999999997654433332 3444333223456778999999962
Q ss_pred CCCCcccchHHHHH------------------------HHHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 219 LPPDLQWTIATQAR------------------------AYAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 219 ~~~~~~~~~~~~~~------------------------~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+............ +..+..+ .+++++||+++.|++++++++...+.
T Consensus 176 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 -SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred -CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 2211111111111 1122334 57899999999999999999987763
No 268
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.23 E-value=1.3e-10 Score=117.45 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=89.8
Q ss_pred CChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECC-e----------E-----EEEEEEeCCCCcCCcccccccccCCc
Q 023316 111 IGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQG-A----------R-----IAFSIWDVGGDSRSFDHVPIACKDAV 173 (284)
Q Consensus 111 vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~-~----------~-----~~l~l~Dt~G~e~~~~~~~~~~~~ad 173 (284)
++||||+.++.+........ .++-.+....+.++. . . -.+.+|||+|++.|..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 34999999998876652222 222222222222221 0 0 12789999999999888888889999
Q ss_pred EEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-C-----------cccchHHHH----H--
Q 023316 174 AILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP-D-----------LQWTIATQA----R-- 232 (284)
Q Consensus 174 ~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-~-----------~~~~~~~~~----~-- 232 (284)
++++|+|+++ +.+++.+. .+... ..|.|+|+||+|+...... . .++. .++. .
T Consensus 552 ivlLVVDa~~Gi~~qT~e~I~----~lk~~--~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~-~~el~~~l~~v 624 (1049)
T PRK14845 552 LAVLVVDINEGFKPQTIEAIN----ILRQY--KTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHA-LTELEIKLYEL 624 (1049)
T ss_pred EEEEEEECcccCCHhHHHHHH----HHHHc--CCCEEEEEECCCCccccccccchhhhhhhhhhHHHH-HHHHHHHHHHH
Confidence 9999999987 45555443 22222 3455899999997422110 0 0110 1111 0
Q ss_pred --HHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 233 --AYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 233 --~~a~------------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++++ .+ .++++.+||++|+|+++++.++...
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 1111 11 3578999999999999999877643
No 269
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=5.5e-11 Score=98.04 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=100.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc---CCcEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM 178 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~---~ad~iilv 178 (284)
.|+++|..++|||+|..++..+.+...+.++..+- .++.++... +.+.|.+|+++.+.-...+++ .+-+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~--a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNE--ATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeeccce--eeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 48999999999999999999886655444444432 233444444 669999999997765555665 78999999
Q ss_pred EeCCC-hhhHHHHHHH-HHHHHhH--CCCCceE-EEEeCCCCCCCCCCCcccch-HHHHHHHH-----------------
Q 023316 179 FDLTS-RCTLNSIVGW-YSEARKW--NQTAIPI-LIGTKFDDFVRLPPDLQWTI-ATQARAYA----------------- 235 (284)
Q Consensus 179 ~d~~~-~~s~~~~~~~-~~~l~~~--~~~~~~I-lv~nK~Dl~~~~~~~~~~~~-~~~~~~~a----------------- 235 (284)
.|..- ..-..++.++ |+-+... ..+.||| +++||.|+.-..+.+.-+.. +.|+..+-
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99743 2334444444 4434333 2466665 88999998655443321111 22211110
Q ss_pred ---------------HHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 236 ---------------KAMKATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 236 ---------------~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
+...+.|.++|++++ +++++-+|+...
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 012356788999988 899998888654
No 270
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.21 E-value=9.6e-11 Score=100.47 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=106.2
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeE-EEEECCeEEEEEEEeCCCCcC-------Ccccccc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVPI 167 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~~~l~l~Dt~G~e~-------~~~~~~~ 167 (284)
....++|+++|..|+|||||+|++...+.. -..-..+.+.... ...+++.. +.+||++|-++ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHH
Confidence 334789999999999999999999965544 1111222222222 12345544 66999999876 5566677
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC---------CCCCcccc-hHHHHHHHHHH
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------LPPDLQWT-IATQARAYAKA 237 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~---------~~~~~~~~-~~~~~~~~a~~ 237 (284)
++...|.++++.+..|+.---+. +++..+....-+.+.|++.|.+|...- .+...+++ +.+++....+.
T Consensus 114 ~l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 114 YLPKLDLVLWLIKADDRALGTDE-DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred HhhhccEEEEeccCCCccccCCH-HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999887532222 334444444445666899999995211 11111111 12223332222
Q ss_pred cC--CcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 238 MK--ATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 238 ~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.. .|++..|...+-|++++...++..+-..
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 21 3777888899999999999999887643
No 271
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.21 E-value=6.8e-11 Score=117.19 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=80.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC---------------CCCC-c---ccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN---------------EQER-S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~---------------~~~~-~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|+.++|||||+.+|+.. .+.. + ..|+........+..++..+.+.+|||+|+.+
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 579999999999999999999742 1111 0 11333333333444567778899999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|......+++.+|++|+|+|+.+....+...-|.. +.+ ...|+|+++||+|.
T Consensus 99 f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~ 150 (720)
T TIGR00490 99 FGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDR 150 (720)
T ss_pred cHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhc
Confidence 98888889999999999999987543333333322 221 23456899999996
No 272
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.21 E-value=4.5e-10 Score=104.72 Aligned_cols=163 Identities=11% Similarity=0.115 Sum_probs=121.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
+...+++.++|..++|||.|++.|++..+. ++..++...+....+.+.|+...+.+-|.+-. ...-+...- ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 344688999999999999999999999888 44457777777777777788888888887755 333232222 789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v~ 254 (284)
.++||.+++.+|+-+...++..... ...|.++|++|+|| ++..|+...+. .+++++++++ .+.+|.++... .
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dl----De~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~ 572 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADL----DEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-N 572 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeecccc----chhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-c
Confidence 9999999999999888766654443 34444799999995 55444443344 8899999984 44567664333 8
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|..|+.++....
T Consensus 573 ~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 573 ELFIKLATMAQYPH 586 (625)
T ss_pred hHHHHHHHhhhCCC
Confidence 99999998876554
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.20 E-value=8.6e-11 Score=115.91 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=73.0
Q ss_pred EcCCCCChHHHHHHHhcCCCC----C----------c-----ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc
Q 023316 106 LGDCQIGKTSFVVKYVGNEQE----R----------S-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 166 (284)
Q Consensus 106 lG~~~vGKSsLl~~l~~~~~~----~----------~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~ 166 (284)
+|..++|||||+++|+...-. . . ...+..+.....+..++ +.+.+|||+|+..|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~--~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG--HKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC--EEEEEEECCCcHHHHHHHH
Confidence 699999999999999543210 0 0 01222223333444444 6688999999998877788
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
.+++.+|++|+|+|.+...+......|. .+.. ...|.|+|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCC
Confidence 8899999999999999877766554443 3332 234558999999964
No 274
>PRK12739 elongation factor G; Reviewed
Probab=99.19 E-value=2.3e-10 Score=113.11 Aligned_cols=112 Identities=17% Similarity=0.142 Sum_probs=78.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC-----CC--C------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE-----QE--R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~-----~~--~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|..++|||||+++|+... .. . ....+..+.....+..++ ..+.++||+|+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence 5789999999999999999997421 00 0 112334444444555555 4577999999998
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
|...+...++.+|++|+|+|.++...-++..- +..+... ..|.|++.||+|+.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i-~~~~~~~--~~p~iv~iNK~D~~ 138 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETV-WRQADKY--GVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHH-HHHHHHc--CCCEEEEEECCCCC
Confidence 87778888999999999999987654443332 3333332 34558999999974
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.17 E-value=9.9e-10 Score=104.63 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=69.7
Q ss_pred EEEEEeCCCCcCC-cc----cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 149 AFSIWDVGGDSRS-FD----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 149 ~l~l~Dt~G~e~~-~~----~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
.+.+.||+|...- .. .....+.++|++++|.|.+..-+..+ ....+.+.+.....|.|+|.||+|+. ...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~---dre- 305 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQ---DRN- 305 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCC---Ccc-
Confidence 4678899998752 12 23346899999999999987544433 23444454433224668999999962 111
Q ss_pred ccchHHHHHHHHH----HcC---CcEEEEcCCCCcCHHHHHHHHHH
Q 023316 224 QWTIATQARAYAK----AMK---ATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 224 ~~~~~~~~~~~a~----~~~---~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
. ...+....+.+ ..+ ..+|.+||+.|.|++++++.+..
T Consensus 306 e-ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 S-DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred c-chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 1 11233333322 112 36889999999999999998876
No 276
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.16 E-value=5.7e-10 Score=93.73 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=61.8
Q ss_pred EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 228 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~ 228 (284)
...+.++.|..-.....+ .-++.+|.|+|+++.++... .+...+ ..--++++||+|+....+ .......
T Consensus 93 D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~-~~~~~~~ 161 (199)
T TIGR00101 93 EMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVG-ADLGVME 161 (199)
T ss_pred CEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhcccccc-ccHHHHH
Confidence 445667777422222211 12688999999987665321 111222 111289999999732111 1111113
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 229 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 229 ~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+.++.+ ..+++++++||++|+|++++|+++.+...
T Consensus 162 ~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 333333 34689999999999999999999987653
No 277
>PTZ00258 GTP-binding protein; Provisional
Probab=99.16 E-value=7.6e-10 Score=101.30 Aligned_cols=84 Identities=13% Similarity=0.161 Sum_probs=61.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF 162 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~ 162 (284)
..+||.++|.||||||||+|++.+.... .++|.++.+.....+.+.+.. .++++.||+|...-.
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3579999999999999999999888766 677755555555555554332 348899999976422
Q ss_pred ----cccccc---ccCCcEEEEEEeCC
Q 023316 163 ----DHVPIA---CKDAVAILFMFDLT 182 (284)
Q Consensus 163 ----~~~~~~---~~~ad~iilv~d~~ 182 (284)
.+...| ++.+|++++|.|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 233333 57899999999973
No 278
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2.6e-10 Score=102.82 Aligned_cols=158 Identities=13% Similarity=0.092 Sum_probs=98.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-C--------------------------ccc---ccceeeeeEEEEECCeE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGAR 147 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~--------------------------~~~---t~~~~~~~~~~~~~~~~ 147 (284)
...++++++|+..+|||||+-+|+.+-=. + ... --|.++......+....
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 45799999999999999999998532100 0 000 01333333333444455
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHH--H---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS--I---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~--~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
+.+.|.|++|+..|-.-.-.-...||+.|||.|+.+.+--.. . .+-.--|.....-.-.|++.||.|+.. -+++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde~ 163 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDEE 163 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCHH
Confidence 678999999988876555556689999999999987641111 0 111111222222233479999999743 2222
Q ss_pred cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316 223 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI 256 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l 256 (284)
+-..+..+...+.+..| ++|+.+||..|+|+.+.
T Consensus 164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 22233455555666665 56999999999998653
No 279
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.15 E-value=1e-09 Score=99.45 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc--
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF-- 162 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~-- 162 (284)
++|.++|.||||||||+|++++.+.. ..+|.++.+.....+.+.+.. ..+++.|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999998855 677755555555555554432 258899999976421
Q ss_pred --cccccc---ccCCcEEEEEEeCC
Q 023316 163 --DHVPIA---CKDAVAILFMFDLT 182 (284)
Q Consensus 163 --~~~~~~---~~~ad~iilv~d~~ 182 (284)
.+...| ++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 233333 57899999999983
No 280
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.15 E-value=1.2e-10 Score=107.57 Aligned_cols=166 Identities=22% Similarity=0.403 Sum_probs=128.0
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCC
Q 023316 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 172 (284)
Q Consensus 93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~a 172 (284)
.-.....++|+-++|..++|||+|+.+|+...|.....+.|..|. +.+.+++....+-+.|.+|.. -.+|....
T Consensus 23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~k-kE~vv~gqs~lLlirdeg~~~-----~aQft~wv 96 (749)
T KOG0705|consen 23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFK-KEVVVDGQSHLLLIRDEGGHP-----DAQFCQWV 96 (749)
T ss_pred eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccce-eeEEeeccceEeeeecccCCc-----hhhhhhhc
Confidence 334455689999999999999999999999999866667776665 556677777778888988732 34577899
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC-CCce-EEEEeCCCCCCCCCCCcccch-HHHHHHHHHH-cCCcEEEEcCC
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKA-MKATLFFSSAT 248 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~-Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~-~~~~~~~~Sa~ 248 (284)
|++|+||.+-+..+|+.++.....+..+.. ..++ ++++++.- .+....+++ ..++++++.. ..+.||+++|.
T Consensus 97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~----iS~~~~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH----ISAKRPRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch----hhcccccccchHHHHHHHHhcCccceeecchh
Confidence 999999999999999999887777765532 3444 68888754 444444544 5555555544 46899999999
Q ss_pred CCcCHHHHHHHHHHHHhCCc
Q 023316 249 HNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~~ 268 (284)
+|.|+...|+.+...+..+.
T Consensus 173 yGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998887653
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.14 E-value=1.2e-09 Score=98.29 Aligned_cols=121 Identities=18% Similarity=0.236 Sum_probs=79.7
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEEeCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFD 214 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~D 214 (284)
.+.+.+||++||...+..|.+++.+++++|+|+|+++- ..+.+....++.+... -.+.|.+|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46688999999999999999999999999999999873 2233333333333322 12455589999999
Q ss_pred CCCC----------CCCCcc-cchHHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 215 DFVR----------LPPDLQ-WTIATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 215 l~~~----------~~~~~~-~~~~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+... .|+... ....+.+..|... ..+-.+.++|.+..++..+|+.+...|+..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 5422 111111 1123333333222 123345699999999999999998888654
No 282
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.13 E-value=6.4e-10 Score=98.37 Aligned_cols=116 Identities=18% Similarity=0.145 Sum_probs=71.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc-------cc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI 167 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~-------~~ 167 (284)
+...++|+++|.+||||||++|++++.+.. +..++.+..........+| ..+.++||+|......+. ..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 345789999999999999999999988743 3333333322222333455 457899999987643221 11
Q ss_pred cc--cCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCC---CCceEEEEeCCCC
Q 023316 168 AC--KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQ---TAIPILIGTKFDD 215 (284)
Q Consensus 168 ~~--~~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~---~~~~Ilv~nK~Dl 215 (284)
|+ ...|++|+|..++... +.+. ...++.+..... -...||+.|+.|.
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 22 2689999996654321 2111 234444444322 2345899999996
No 283
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.13 E-value=1.9e-10 Score=86.96 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=92.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccc----cccCCcEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI----ACKDAVAILF 177 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~----~~~~ad~iil 177 (284)
||+++|..|+|||||.+.+.|+... +..|..+++. +.. ..||+|.--.+..+.+ ...++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-ykKTQAve~~-------d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-YKKTQAVEFN-------DKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhh-hcccceeecc-------Ccc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7999999999999999999887542 2223333332 221 4588885432232322 2468999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~~l 256 (284)
|-.+++++|.-. ..+..- ...+.|-|.+|.|| ++. ...+..++|..+.|+ ++|++|+.++.||+++
T Consensus 71 v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DL----aed---~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 71 VHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADL----AED---ADISLVKRWLREAGAEPIFETSAVDNQGVEEL 137 (148)
T ss_pred eecccCccccCC-----cccccc-cccceEEEEecccc----cch---HhHHHHHHHHHHcCCcceEEEeccCcccHHHH
Confidence 999999876211 111111 12346889999996 321 124567788888887 6888999999999999
Q ss_pred HHHHHHH
Q 023316 257 FKFIMAK 263 (284)
Q Consensus 257 f~~l~~~ 263 (284)
++.+...
T Consensus 138 ~~~L~~~ 144 (148)
T COG4917 138 VDYLASL 144 (148)
T ss_pred HHHHHhh
Confidence 9988653
No 284
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=7.9e-10 Score=102.43 Aligned_cols=154 Identities=10% Similarity=0.098 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
..=|.++|.-.-|||||+..|-+.... ...- |..+--+..++. +|+. +.|.||+|+..|..|+..-..-+|.++
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~--iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKS--ITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCE--EEEecCCcHHHHHHHHhccCccccEEE
Confidence 345889999999999999999877665 2222 222222223333 5655 558999999999999998889999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCC
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHN 250 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~a~~~~--~~~~~~Sa~~~ 250 (284)
+|....|.-.-+. ++.|..... +.|+|+..||+|. |+....-+..++.. ..+.+| +..+.+||++|
T Consensus 230 LVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDk----p~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g 301 (683)
T KOG1145|consen 230 LVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDK----PGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTG 301 (683)
T ss_pred EEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCC----CCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccC
Confidence 9998877432222 223333233 3444789999994 43322222222221 123444 56789999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++.+-+.++-.+
T Consensus 302 ~nl~~L~eaill~A 315 (683)
T KOG1145|consen 302 ENLDLLEEAILLLA 315 (683)
T ss_pred CChHHHHHHHHHHH
Confidence 99999988877544
No 285
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.12 E-value=4.2e-10 Score=103.23 Aligned_cols=163 Identities=17% Similarity=0.202 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----ccccc----cc-
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVPI----AC- 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~~~~----~~- 169 (284)
.-.++|+|.||||||||++........ .+|+.++-.++...+. -....+++.||+|.-+.. ....+ .+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~d--ykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLD--YKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhh--hheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 346899999999999999999988877 7788554444434332 234568899999965421 11111 11
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH-HHHHHHHHHcCCcEEEEc
Q 023316 170 KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA-TQARAYAKAMKATLFFSS 246 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~S 246 (284)
.--.+++++.|++..+ |.++..++++.|+..-.+.|.|+|.||+|+ +..+.-.... +....+...-+++++++|
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~---m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA---MRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc---cCccccCHHHHHHHHHHHhccCceEEEec
Confidence 1124678888887654 566666888888877777788999999997 3333222222 333444445568999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCC
Q 023316 247 ATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~ 267 (284)
+.+.+||-++-...+..++..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccchhceeeHHHHHHHHHHHH
Confidence 999999988877777666543
No 286
>PRK00007 elongation factor G; Reviewed
Probab=99.11 E-value=6.1e-10 Score=110.05 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc--CCCC-----C------------cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG--NEQE-----R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~--~~~~-----~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
-.+|+++|.+++|||||+++|+. +... . ....+..+.....+..++ ..+.+.||+|+.+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence 56999999999999999999973 1100 0 112334444444555555 4577999999988
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
|.......++.+|++|+|+|......-++..-|. .+.+. ..|.|++.||+|+.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~ 140 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence 7666666788999999999987765544434333 23322 34558999999974
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.10 E-value=3.1e-09 Score=92.19 Aligned_cols=115 Identities=19% Similarity=0.165 Sum_probs=71.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c-------c
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H-------V 165 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~-------~ 165 (284)
...++|+|+|.+|||||||+|.+.+.... ....+.+..........++ ..+.+|||+|...... . .
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 34789999999999999999999998754 3333333333323334455 4577999999876521 1 1
Q ss_pred ccccc--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316 166 PIACK--DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQT---AIPILIGTKFDD 215 (284)
Q Consensus 166 ~~~~~--~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~---~~~Ilv~nK~Dl 215 (284)
..|+. ..+++++|..++.. .++.+ ...++.+.+.... ...|+|.||+|.
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 22332 57888888766543 22332 2344444443221 245899999996
No 288
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.05 E-value=5.1e-09 Score=95.06 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=79.4
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl 215 (284)
+.+.+||++|+...+..|.+++.+++++|+|.|+++- ..+.+....++.+... -.+.|.+|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4578999999999999999999999999999999863 2333333444444332 234555899999996
Q ss_pred CCC----------CCCCcccchHHHHHHHHHH-----c------CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 216 FVR----------LPPDLQWTIATQARAYAKA-----M------KATLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 216 ~~~----------~~~~~~~~~~~~~~~~a~~-----~------~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
... .|+..-....+.+..|... . .+-.+.|+|.+-.++..+|+.+...|++..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 422 1111111123333333221 1 123456999999999999999888876543
No 289
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.02 E-value=7.7e-09 Score=87.77 Aligned_cols=160 Identities=17% Similarity=0.119 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Cc--ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc--------ccc---
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP--- 166 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~--------~~~--- 166 (284)
++|+|+|..|+||||++|.+++.... .. ..+...........++|.. +.++||+|.-.... +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 68999999999999999999998754 22 1222333444445778866 56999999643221 111
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCC---CceEEEEeCCCCCCCCCCCc-ccch----HHHHHHHHHHc
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT---AIPILIGTKFDDFVRLPPDL-QWTI----ATQARAYAKAM 238 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~---~~~Ilv~nK~Dl~~~~~~~~-~~~~----~~~~~~~a~~~ 238 (284)
....+.+++|+|+..+ +-+-++.. .++.+.+.-+. .-.|||.|..|. +.+.. .... ....+++.+..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~-~l~~l~~~FG~~~~k~~ivvfT~~d~---~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDRE-VLELLQEIFGEEIWKHTIVVFTHADE---LEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHH-HHHHHHHHHCGGGGGGEEEEEEEGGG---GTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEEEecC-cchHHHHH-HHHHHHHHccHHHHhHhhHHhhhccc---cccccHHHHHhccCchhHhHHhhhc
Confidence 1245789999999988 44433322 22333332221 234788888884 22221 1111 13356777788
Q ss_pred CCcEEEEcCC------CCcCHHHHHHHHHHHHhCC
Q 023316 239 KATLFFSSAT------HNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 239 ~~~~~~~Sa~------~~~~v~~lf~~l~~~i~~~ 267 (284)
+-.|+..+.+ ....+.++|+.+-..+..+
T Consensus 154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 8888887666 2345788888877766544
No 290
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.00 E-value=8.3e-09 Score=94.17 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=111.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC--CCC------------ccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE--QER------------SLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 165 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~--~~~------------~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~ 165 (284)
-+|+++-.---|||||+..++... |.. +.. --|+++..+...++-..+.+.+.||+|+-+|....
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 479999999999999999997643 221 001 22555655544443334668899999999999999
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-------c
Q 023316 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------M 238 (284)
Q Consensus 166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-------~ 238 (284)
...++-.|++++++|+....--+ .+..++... ...-+||+|.||+| .|..+...+.++...+.-. +
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl--~~gL~PIVVvNKiD----rp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKAL--ALGLKPIVVINKID----RPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCCc-hhhhHHHHH--HcCCCcEEEEeCCC----CCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 99999999999999997643211 122233222 23557899999999 4555444445555554433 4
Q ss_pred CCcEEEEcCCCCc----------CHHHHHHHHHHHHhCCc
Q 023316 239 KATLFFSSATHNI----------NVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 239 ~~~~~~~Sa~~~~----------~v~~lf~~l~~~i~~~~ 268 (284)
.++++..|+.+|. ++..+|+.|+..+....
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 5788888988653 58889999998886554
No 291
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.97 E-value=5.4e-09 Score=94.00 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 227 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~ 227 (284)
+.+.|.||+|....... ....+|.++++.+....+....+. ..+.+.. -|+|.||+|+. +.......
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~a----DIiVVNKaDl~---~~~~a~~~ 215 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMELA----DLIVINKADGD---NKTAARRA 215 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhhh----heEEeehhccc---chhHHHHH
Confidence 56789999998743322 466899999997644444443322 2122211 28999999962 21111111
Q ss_pred HHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 228 ATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 228 ~~~~~~~a~~-------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
..+.+..... +..+++.+||+++.|++++++.+.+.+-
T Consensus 216 ~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 216 AAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 2233332222 2257999999999999999999988653
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.94 E-value=2.8e-08 Score=84.00 Aligned_cols=148 Identities=12% Similarity=0.143 Sum_probs=79.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC-CC--C-----Cccccccee------eeeEEEEE-CC-------------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN-EQ--E-----RSLQMAGLN------LINKTLMV-QG------------------- 145 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~-~~--~-----~~~~t~~~~------~~~~~~~~-~~------------------- 145 (284)
...|.++|..|+|||||+++++.. .. . ... ..+.| .....+.+ +|
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~-~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDV-ITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCC-CCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 467889999999999999999754 11 0 000 00000 00011111 11
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 225 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~ 225 (284)
....+.+.+|.|.-... ..+....+..+.|+|+++.+.... . ...+ ...+.++++||+|+. +.. .
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~-~~~~----~~~a~iiv~NK~Dl~---~~~-~- 165 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--K-YPGM----FKEADLIVINKADLA---EAV-G- 165 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--h-hHhH----HhhCCEEEEEHHHcc---ccc-h-
Confidence 12345677777721100 111123455567788775543111 0 0111 123448999999972 111 1
Q ss_pred chHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 226 TIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 226 ~~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
....+..+..++. .++++++||+++.|++++|+++.+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 166 FDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 1122233333333 3889999999999999999999874
No 293
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.93 E-value=3.2e-08 Score=83.91 Aligned_cols=152 Identities=18% Similarity=0.262 Sum_probs=106.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-------cccccccC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-------HVPIACKD 171 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-------~~~~~~~~ 171 (284)
..+|+++|.|+||||||+..+..-... ..|.-+..+.....+.++|.. +++.|.+|.-.-.+ ..-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 368999999999999999999887776 777777777778888999977 56999999654221 22234578
Q ss_pred CcEEEEEEeCCChhhHHH-HHHHHHHHH----hHCCC-------------------------------------------
Q 023316 172 AVAILFMFDLTSRCTLNS-IVGWYSEAR----KWNQT------------------------------------------- 203 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~-~~~~~~~l~----~~~~~------------------------------------------- 203 (284)
||.+++|.|.+..+.-.+ +.+-++..- +..++
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 999999999987654322 222222210 00000
Q ss_pred ----------------C--ce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 204 ----------------A--IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 204 ----------------~--~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
. .+ +-|.||+|. +..++...+|++-+ -+.+|+.-+-|++.+++.+...+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce----------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence 0 12 457888882 23566777777655 45678899999999999999876
Q ss_pred h
Q 023316 265 F 265 (284)
Q Consensus 265 ~ 265 (284)
-
T Consensus 288 ~ 288 (364)
T KOG1486|consen 288 N 288 (364)
T ss_pred c
Confidence 3
No 294
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.91 E-value=1.3e-08 Score=90.16 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=96.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc----------cccc---------------------ceeeeeEEEEEC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE---RS----------LQMA---------------------GLNLINKTLMVQ 144 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~----------~~t~---------------------~~~~~~~~~~~~ 144 (284)
..++.+-+|.---|||||+-||+.+.-. .. ..+. ++|.-.+. +.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRy--Fs 82 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRY--FS 82 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeee--cc
Confidence 3689999999999999999999755311 00 0111 12222121 12
Q ss_pred CeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316 145 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
-.+-+|.+-||+|+++|..-.-.-...||+.|++.|.-. ...+..+-...|...-.-...||..||+||.+ .+++.-
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~--Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvd-y~e~~F 159 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARK--GVLEQTRRHSFIASLLGIRHVVVAVNKMDLVD-YSEEVF 159 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecch--hhHHHhHHHHHHHHHhCCcEEEEEEeeecccc-cCHHHH
Confidence 334568899999999997665556678999999999843 22222111222222223334479999999721 122222
Q ss_pred cchHHHHHHHHHHcCC---cEEEEcCCCCcCHH
Q 023316 225 WTIATQARAYAKAMKA---TLFFSSATHNINVN 254 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~~---~~~~~Sa~~~~~v~ 254 (284)
..+..+-..|+.++++ .++.+||..|+||-
T Consensus 160 ~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3346677888999885 58889999999974
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.90 E-value=2.2e-08 Score=85.82 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=81.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
...|+++|.+|+|||||++.+.+..-.... ...|. + ++ .......+.++||+|.- ..+. ...+.+|+++++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEE
Confidence 567999999999999999999865221111 11121 1 11 11233456799999864 2222 235789999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHH-HHHH--cCCcEEEEcCCCCcC
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARA-YAKA--MKATLFFSSATHNIN 252 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~a~~--~~~~~~~~Sa~~~~~ 252 (284)
+|.+....... ..++..+... ..|. |+|.||+|+.+ +.+......+++++ +..+ .+.+++.+||+++..
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~--~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFK--KNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCC--cHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 99976544322 2333434332 2343 46999999631 11111122333333 3322 246899999998744
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.88 E-value=2.1e-08 Score=99.86 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=76.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--C----------ccc-----ccceeee--eEEEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--R----------SLQ-----MAGLNLI--NKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~----------~~~-----t~~~~~~--~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|..++|||||+.+++...-. . ..+ .+..+.. ...+..++....+.+.||+|+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999999753211 0 000 1111111 11222355567888999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|.......++.+|++|+|+|.......+...-|.... +. ..++|++.||+|+
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~-~~--~~~~iv~iNK~D~ 151 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQAL-RE--RVKPVLFINKVDR 151 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHH-Hc--CCCeEEEEECchh
Confidence 9888888899999999999987764444333444322 22 3456899999995
No 297
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.88 E-value=9.7e-08 Score=87.01 Aligned_cols=154 Identities=10% Similarity=0.106 Sum_probs=94.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC----CCC-------------Ccc-----cccceee---eeEEEEE-CCeEEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN----EQE-------------RSL-----QMAGLNL---INKTLMV-QGARIAFSIW 153 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~----~~~-------------~~~-----~t~~~~~---~~~~~~~-~~~~~~l~l~ 153 (284)
.+-|.|+|+.++|||||+++|.+. ... ++. .|+.+-| ....+.. ++....+.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 678999999999999999999877 222 111 1233333 2233322 4566778899
Q ss_pred eCCCCcCCccc-----------------------------cccccc-CCcEEEEEE-eCC----ChhhHHHH-HHHHHHH
Q 023316 154 DVGGDSRSFDH-----------------------------VPIACK-DAVAILFMF-DLT----SRCTLNSI-VGWYSEA 197 (284)
Q Consensus 154 Dt~G~e~~~~~-----------------------------~~~~~~-~ad~iilv~-d~~----~~~s~~~~-~~~~~~l 197 (284)
||+|-..-..+ ++..+. .++..|+|. |.+ .++.+.+. ..|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99996542111 122344 888888888 663 23344443 3788888
Q ss_pred HhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC--CcCHHHHHHHHHH
Q 023316 198 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH--NINVNKIFKFIMA 262 (284)
Q Consensus 198 ~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~--~~~v~~lf~~l~~ 262 (284)
++. +.|.|+|.||.|- . .....+...++.+.++++++.+|+.. .+.+..+|+.+..
T Consensus 177 k~~--~kPfiivlN~~dp------~-~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHP------Y-HPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred Hhc--CCCEEEEEECcCC------C-CchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 664 4466899999992 1 11123344566777899988888763 2344555544443
No 298
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=1.4e-08 Score=96.94 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=102.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc----ccceeeeeEE----------------EEECCeEEEEEEEeC
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ----MAGLNLINKT----------------LMVQGARIAFSIWDV 155 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~----t~~~~~~~~~----------------~~~~~~~~~l~l~Dt 155 (284)
+.+..-|+++|.-.+|||-|+..+-+.... .... .+|.+|.... +.+.| +.++||
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg----~lvIdt 547 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG----LLVIDT 547 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe----eEEecC
Confidence 455567999999999999999999775544 2222 3344443221 22222 568899
Q ss_pred CCCcCCcccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC-C--CCCCC-------
Q 023316 156 GGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF-V--RLPPD------- 222 (284)
Q Consensus 156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~-~--~~~~~------- 222 (284)
+|++.|..++......||.+|+|.|+.. +.+.+++ +.|+. ...|.||..||+|.- . ..+..
T Consensus 548 pghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred CCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 9999999999999999999999999975 3444443 22332 245669999999941 0 01110
Q ss_pred --cccch-------HHHHHHHHHH-cC-------------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 223 --LQWTI-------ATQARAYAKA-MK-------------ATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 223 --~~~~~-------~~~~~~~a~~-~~-------------~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
...+. .....+|+++ ++ +.++.|||.+|+||.+++.+|+...
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 00000 1112333332 11 3456699999999999999988754
No 299
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.3e-07 Score=84.80 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC----------------eEEEEEEEeCCCCcC--
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG----------------ARIAFSIWDVGGDSR-- 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~----------------~~~~l~l~Dt~G~e~-- 160 (284)
.+++-++|.||||||||.|.++..... .+||-.+++-....+.+.. ....+++.|+||...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999999866 7888333332222322211 135689999998765
Q ss_pred --Ccccccccc---cCCcEEEEEEeCC
Q 023316 161 --SFDHVPIAC---KDAVAILFMFDLT 182 (284)
Q Consensus 161 --~~~~~~~~~---~~ad~iilv~d~~ 182 (284)
-..+...|+ +.+|+++.|+|+.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 456777774 7899999999875
No 300
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.80 E-value=1.7e-08 Score=84.08 Aligned_cols=94 Identities=14% Similarity=0.185 Sum_probs=63.8
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----- 235 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a----- 235 (284)
+..+...+++++|++++|+|+++... .|...+.......++|+|+||+|+. +.+. ..+....+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl~---~~~~---~~~~~~~~~~~~~~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDLL---PKDK---NLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhcC---CCCC---CHHHHHHHHHHHHH
Confidence 46777889999999999999987642 2333332223345668999999972 2211 122233332
Q ss_pred HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 236 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 236 ~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+..+. +++.+||+++.|++++++.+...+.
T Consensus 93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 93 AGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 23333 6899999999999999999988763
No 301
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.79 E-value=1.7e-07 Score=89.89 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=101.3
Q ss_pred HHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcccccccccCCCCCCCCCccccccccccccc
Q 023316 7 EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSR 86 (284)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (284)
+..+++-.+=.|..+.=-|-+..++-.+..|.+-++. | +.++..+ ..+- .. .+..... .
T Consensus 48 ~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~---l-~~~~~~~-~~~s---~d--------~a~~~a~--~--- 106 (763)
T TIGR00993 48 EKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLG---L-LAGRQGG-GAFS---LD--------AAKAMAE--Q--- 106 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHH---H-hhccCcc-cccc---ch--------hhHHHHh--h---
Confidence 4445555566666666677777777778877776643 2 2222221 0000 00 0000000 0
Q ss_pred ccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCC-C-Ccc-c-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 87 ~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~-~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
........-...++|+|+|.+||||||++|.+++.+. . ... + |+. .......++|. .+.++||+|.....
T Consensus 107 --~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr--~~ei~~~idG~--~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 107 --LEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS--VQEIEGLVQGV--KIRVIDTPGLKSSA 180 (763)
T ss_pred --hhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE--EEEEEEEECCc--eEEEEECCCCCccc
Confidence 0000111112368999999999999999999999863 3 322 2 332 22222344554 47799999987642
Q ss_pred c-------c---cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC---ceEEEEeCCCC
Q 023316 163 D-------H---VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA---IPILIGTKFDD 215 (284)
Q Consensus 163 ~-------~---~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~---~~Ilv~nK~Dl 215 (284)
. + ...++. .+|++|+|..++......+-..+++.|.+..... -.|||.|+.|.
T Consensus 181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 1 1 111333 5899999998764433222235666666554433 33899999996
No 302
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=2.2e-08 Score=91.69 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=71.6
Q ss_pred CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHHHH
Q 023316 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAK 236 (284)
Q Consensus 158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~ 236 (284)
+++|..+...+++.++++++|+|+.+.. ..|.+++.+.....++++|+||+|| ++.... ....+..+++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DL---l~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDL---LPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhh---CCCCCCHHHHHHHHHHHHH
Confidence 4567888888999999999999997654 2466666666555566899999997 332211 111233345567
Q ss_pred HcCC---cEEEEcCCCCcCHHHHHHHHHHH
Q 023316 237 AMKA---TLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 237 ~~~~---~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
..++ .++++||++|.|++++|+.+...
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 7776 48899999999999999998764
No 303
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.77 E-value=3.9e-08 Score=86.31 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=58.6
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCC----c
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS----F 162 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~----~ 162 (284)
|.++|.||||||||+|++++.+.. ..++.++.+.....+.+.+.. ..+++.|++|..+- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999998876 677755555555556665532 25889999997642 2
Q ss_pred cccccc---ccCCcEEEEEEeC
Q 023316 163 DHVPIA---CKDAVAILFMFDL 181 (284)
Q Consensus 163 ~~~~~~---~~~ad~iilv~d~ 181 (284)
.+...| ++.+|++++|+|+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeC
Confidence 233344 4689999999986
No 304
>PTZ00416 elongation factor 2; Provisional
Probab=98.76 E-value=2.6e-08 Score=100.31 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=75.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc---------------ccceeeeeEEEEEC--------CeEEEEEEEe
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---------------MAGLNLINKTLMVQ--------GARIAFSIWD 154 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~---------------t~~~~~~~~~~~~~--------~~~~~l~l~D 154 (284)
..+|+++|..++|||||+.+|+...-. .... .+..+.....+.++ +....+.+.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 348999999999999999999863211 0000 11111111222232 2256788999
Q ss_pred CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|+|+.+|.......++.+|++|+|+|....-..+...-| ..+... ..|.|++.||+|+
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~ 156 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDR 156 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhh
Confidence 999999887778888999999999999876544433333 333322 3455899999996
No 305
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.76 E-value=2.5e-08 Score=100.52 Aligned_cols=113 Identities=15% Similarity=0.186 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--Ccc----------c---ccceeee--eEEEEE--------------CCeEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSL----------Q---MAGLNLI--NKTLMV--------------QGARI 148 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~----------~---t~~~~~~--~~~~~~--------------~~~~~ 148 (284)
-.+|+++|..++|||||+.+++...-. ... + ..|..+. ...+.+ .+...
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 468999999999999999999754311 000 0 0011111 112222 12356
Q ss_pred EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
.+.+.||+|+.+|.......++.+|++|+|+|+...-......-|..... ...|.|++.||+|+
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~~~p~i~~iNK~D~ 162 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDR 162 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---CCCCEEEEEECCcc
Confidence 78899999999998888888899999999999987755444444443322 23455899999996
No 306
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.5e-07 Score=83.07 Aligned_cols=163 Identities=17% Similarity=0.216 Sum_probs=101.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC----CC-Ccc---cccceeeeeEEEEE-------CCeEEEEEEEeCCCCcCCcc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE----QE-RSL---QMAGLNLINKTLMV-------QGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~----~~-~~~---~t~~~~~~~~~~~~-------~~~~~~l~l~Dt~G~e~~~~ 163 (284)
..+++-++|.-.+|||+|..++..-. |. ... ..+..|..-..+.+ .++.+++.+.|++|+...
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL-- 83 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL-- 83 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH--
Confidence 35899999999999999999995422 22 111 12233332223332 356788999999998653
Q ss_pred ccccccc---CCcEEEEEEeCCChhhHHHHHH-HHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHc
Q 023316 164 HVPIACK---DAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAM 238 (284)
Q Consensus 164 ~~~~~~~---~ad~iilv~d~~~~~s~~~~~~-~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~ 238 (284)
.+..+. -.|..++|.|+.....-+..+- .+-++. ....|+|.||+|+ +++..+. .+++..+.+.+.+
T Consensus 84 -IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~---lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 84 -IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDV---LPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred -HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEecccc---ccchhhhhHHHHHHHHHHHHH
Confidence 333333 4577799999976543333221 222221 2234788999996 5553322 2244444444432
Q ss_pred -------CCcEEEEcCCCC----cCHHHHHHHHHHHHhCCcccc
Q 023316 239 -------KATLFFSSATHN----INVNKIFKFIMAKLFNLPWTV 271 (284)
Q Consensus 239 -------~~~~~~~Sa~~~----~~v~~lf~~l~~~i~~~~~~~ 271 (284)
+.|++++||..| +++.++-+.+-..+++.....
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 278999999999 888888888888887665443
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.75 E-value=3.1e-08 Score=80.47 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=44.7
Q ss_pred EEEEeCCCCcC----CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316 150 FSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 213 (284)
Q Consensus 150 l~l~Dt~G~e~----~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~ 213 (284)
+.|+||+|... ...++..|+..+|++|+|.+.+...+-.+...|.+...... ...|+|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcCC
Confidence 78999999754 23567778899999999999998766566666665554332 2357888984
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.74 E-value=1.4e-07 Score=83.41 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--c--------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS--L--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---- 164 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~---- 164 (284)
.++|+|+|..|+|||||+|.|++.... .. . .+..+......+.-++..+.+.++||+|.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987654 21 1 12223333334445788899999999995431110
Q ss_pred ---------------------cc--ccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 165 ---------------------VP--IACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 165 ---------------------~~--~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
.+ ..=...|++|++.+.+... +-.++ ..+++| .....+|-|..|.|. +.
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~L---s~~vNvIPvIaKaD~---lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRL---SKRVNVIPVIAKADT---LT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHH---TTTSEEEEEESTGGG---S-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHh---cccccEEeEEecccc---cC
Confidence 00 0013568999999876532 21222 233444 444455789999996 44
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
.+......+....-.+.+++.+|...
T Consensus 157 ~~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 157 PEELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHHcCceeeccc
Confidence 33222335555666677788776533
No 309
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=4.6e-08 Score=82.44 Aligned_cols=169 Identities=21% Similarity=0.247 Sum_probs=99.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEE--EECCeEEEEEEEeCCCCcCCcccc---cccccCCcEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTL--MVQGARIAFSIWDVGGDSRSFDHV---PIACKDAVAI 175 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~l~l~Dt~G~e~~~~~~---~~~~~~ad~i 175 (284)
.+|+++|...+||||+-.-...+- +...|.-.+...+.. .+.+.-+.|++||.+||-.+..-. ...++++-+.
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkM--sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKM--SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred ceEEEEeecccCcchhhheeeecc--CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 359999999999999944433222 111233322222211 122345779999999998865432 3457899999
Q ss_pred EEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----ccchHHHHHH-HHH----HcCCcEEE
Q 023316 176 LFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----QWTIATQARA-YAK----AMKATLFF 244 (284)
Q Consensus 176 ilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----~~~~~~~~~~-~a~----~~~~~~~~ 244 (284)
|+|.|..+.. .+..+........+-+++.-.=+...|.|- ++++. ++.+.+...+ ++. ...+.|+-
T Consensus 106 ifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG---Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 106 IFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG---LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred EEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC---CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 9999986542 222222222222222333332388899993 44332 2323222222 222 23356777
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCcccccccc
Q 023316 245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNL 275 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~ 275 (284)
||.. .+.+-|+|..+++.+...-.+.|+-+
T Consensus 183 TSIy-DHSIfEAFSkvVQkLipqLptLEnlL 212 (347)
T KOG3887|consen 183 TSIY-DHSIFEAFSKVVQKLIPQLPTLENLL 212 (347)
T ss_pred eeec-chHHHHHHHHHHHHHhhhchhHHHHH
Confidence 8876 67899999999999887776666543
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=2.4e-07 Score=82.79 Aligned_cols=105 Identities=11% Similarity=0.002 Sum_probs=61.0
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 226 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~ 226 (284)
.+.+.|.||+|.-... ......+|.++++-+. .+-+++....+.+. ..+.++|.||+|+. +......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~----~~~~ivv~NK~Dl~---~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM----EIADIYVVNKADGE---GATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh----hhccEEEEEccccc---chhHHHH
Confidence 3567899999854211 1245677888887443 33344443333332 23448999999962 1111111
Q ss_pred hHHH----HHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 227 IATQ----ARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 227 ~~~~----~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
.... ...+.+. +..+++.+||+++.|++++++++....
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 0111 1111111 224689999999999999999998864
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.72 E-value=8.4e-09 Score=88.95 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=54.1
Q ss_pred EEEEEeCCCCcCCcccccccc--------cCCcEEEEEEeCCChhhHH-HHHHHHHHHHhH-CCCCceEEEEeCCCCCCC
Q 023316 149 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLN-SIVGWYSEARKW-NQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~--------~~ad~iilv~d~~~~~s~~-~~~~~~~~l~~~-~~~~~~Ilv~nK~Dl~~~ 218 (284)
.+.++||+||.++...+.... ...-+++++.|.....+-. -+..++-.+... ..+-|.|.|.||+||.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~-- 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLL-- 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS--
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcc--
Confidence 577999999998654444322 3455788888875433211 122333332211 2245669999999973
Q ss_pred CCCCcccc-----------------hHHHHHHHHHH---cC-C-cEEEEcCCCCcCHHHHHHHHHHH
Q 023316 219 LPPDLQWT-----------------IATQARAYAKA---MK-A-TLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 219 ~~~~~~~~-----------------~~~~~~~~a~~---~~-~-~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++..... ...-.+++++- ++ + .++.+|+.+++++.+++..+-+.
T Consensus 170 -~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 170 -SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp --HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred -cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 2110000 00111122222 23 3 68899999999999999887654
No 312
>PRK00098 GTPase RsgA; Reviewed
Probab=98.68 E-value=1e-07 Score=85.03 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=63.8
Q ss_pred cccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 168 ACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~-~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
...++|++++|+|+++++++.. +..|+..+.. ...++++|+||+||. +. .....+.....+..+.+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~----~~--~~~~~~~~~~~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL----DD--LEEARELLALYRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC----CC--HHHHHHHHHHHHHCCCeEEEEe
Confidence 3589999999999998876544 4688877654 345678999999972 11 1112334455566788999999
Q ss_pred CCCCcCHHHHHHHHH
Q 023316 247 ATHNINVNKIFKFIM 261 (284)
Q Consensus 247 a~~~~~v~~lf~~l~ 261 (284)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
No 313
>PRK12289 GTPase RsgA; Reviewed
Probab=98.68 E-value=1.4e-07 Score=85.85 Aligned_cols=94 Identities=16% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316 160 RSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 238 (284)
Q Consensus 160 ~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~ 238 (284)
+...+.+..+.++|.+++|+|+.++. ++..+..|+..+. ....++|||+||+|| .++. . .+......+..
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DL---v~~~---~-~~~~~~~~~~~ 148 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADL---VSPT---E-QQQWQDRLQQW 148 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhc---CChH---H-HHHHHHHHHhc
Confidence 33455666789999999999998876 4556778887663 235677999999997 2211 1 12223333567
Q ss_pred CCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 239 KATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 239 ~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
|.+++.+||.++.|++++++.+..
T Consensus 149 g~~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 149 GYQPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred CCeEEEEEcCCCCCHHHHhhhhcc
Confidence 889999999999999999988864
No 314
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=7.2e-08 Score=84.43 Aligned_cols=168 Identities=15% Similarity=0.151 Sum_probs=106.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC---CCCccc---ccceeeeeE------------EEEE------CC----eEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE---QERSLQ---MAGLNLINK------------TLMV------QG----ARIAF 150 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~---~~~~~~---t~~~~~~~~------------~~~~------~~----~~~~l 150 (284)
.+++|-++|.-.-|||||+..+.+-- +++... |+..-|... .+.. .| -.-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 47899999999999999999997532 211110 111101000 0000 11 11347
Q ss_pred EEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316 151 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 230 (284)
Q Consensus 151 ~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~ 230 (284)
.+.|.+|+|-.-...-.-..-.|+.|+|...+.++.--...+-+-.+.-- .-.-+|++-||+|| ...++..+..++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDl---V~~E~AlE~y~q 164 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDL---VSRERALENYEQ 164 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccce---ecHHHHHHHHHH
Confidence 89999999874332222223458999999998776543333333333222 22344799999998 444444455777
Q ss_pred HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023316 231 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 231 ~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~ 270 (284)
+++|.+-- +++++.+||..+.|++-+++.|...|...+..
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 77777643 68999999999999999999999998765543
No 315
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.63 E-value=2.3e-07 Score=82.35 Aligned_cols=88 Identities=11% Similarity=0.125 Sum_probs=67.1
Q ss_pred cccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 166 PIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 166 ~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
...+.++|.+++|+|++++. ++..+.+|+..+... +.++++|+||+||. ++ . .......+....+.+++.
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~--~ip~iIVlNK~DL~---~~--~--~~~~~~~~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA--GIEPVIVLTKADLL---DD--E--EEELELVEALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc--CCCEEEEEEHHHCC---Ch--H--HHHHHHHHHHhCCCeEEE
Confidence 34578999999999999988 888889998877643 46779999999972 22 1 112223344557889999
Q ss_pred EcCCCCcCHHHHHHHHHH
Q 023316 245 SSATHNINVNKIFKFIMA 262 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~ 262 (284)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999887653
No 316
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.62 E-value=3.6e-07 Score=78.57 Aligned_cols=117 Identities=11% Similarity=0.065 Sum_probs=61.0
Q ss_pred EEEEEEEeCCCCcC-Cc-----cccccccc--CCcEEEEEEeCC---ChhhHHHHHHHHHHHH-hHCCCCceEEEEeCCC
Q 023316 147 RIAFSIWDVGGDSR-SF-----DHVPIACK--DAVAILFMFDLT---SRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFD 214 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~-~~-----~~~~~~~~--~ad~iilv~d~~---~~~s~~~~~~~~~~l~-~~~~~~~~Ilv~nK~D 214 (284)
.....+.||+||-+ |. .+.-..+. ..-+++++.|.- ++.+|=+ ..+-... -+...-|.|++.||+|
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMS--NMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMS--NMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHH--HHHHHHHHHHhccCCeEEEEeccc
Confidence 35578999999976 22 12222222 334556666653 3344422 2211111 1223344589999999
Q ss_pred CCCCCCCCcccch-HHHHHHHHH-------------------H--cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 215 DFVRLPPDLQWTI-ATQARAYAK-------------------A--MKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 215 l~~~~~~~~~~~~-~~~~~~~a~-------------------~--~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+.+.- -...|.. .+..++... + .++..+-+|+.+|.|.+++|..+-..+-+
T Consensus 193 v~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 193 VSDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred ccccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 62110 0012221 111111000 1 14677889999999999999988766543
No 317
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=3e-07 Score=83.57 Aligned_cols=88 Identities=10% Similarity=0.141 Sum_probs=66.3
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
..++|.+++|++++...++..+..|+..+.. ...++|||+||+|| .++. ......+.....+..+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL---~~~~-~~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDL---LDDE-GRAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccC---CCcH-HHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3569999999999988899999999876543 34677999999997 2322 1111223333445678899999999
Q ss_pred CCcCHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMA 262 (284)
Q Consensus 249 ~~~~v~~lf~~l~~ 262 (284)
++.|++++++.+..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998865
No 318
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=9.6e-08 Score=75.68 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=73.9
Q ss_pred HHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHH--HHHHhhhccCCCCccccc--ccccCCCCCCCCCccccccc
Q 023316 5 IHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFI--WERILVCSIGKQPAVRYQ--KLTRRSSSESSPAPDTMEAG 80 (284)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (284)
.+++.+++.+....++.+|.|.....+...+.+++... ...++++-++..-..... ....... ..+
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~----------~~~ 71 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFK----------KEG 71 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHH----------hcC
Confidence 35777888888888889999988777765566555543 223333333222100000 0000000 000
Q ss_pred ccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 81 LVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
.. . -..+. ... .-+++++|.+|||||||+|++.+.+........|.+.....+.+++ .+.+|||+|..
T Consensus 72 ~~-i-i~iSa--~~~----~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~~ 139 (141)
T cd01857 72 IV-V-VFFSA--LKE----NATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGLV 139 (141)
T ss_pred Ce-E-EEEEe--cCC----CcEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCcC
Confidence 00 0 00000 000 1189999999999999999999988652222333333444555654 36799999963
No 319
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.57 E-value=2e-07 Score=83.76 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=78.2
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhH-------HHHH---HHHHHHHhH--CCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL-------NSIV---GWYSEARKW--NQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~-------~~~~---~~~~~l~~~--~~~~~~Ilv~nK~Dl 215 (284)
..+.++|++||...+.-|-+++.+++++|+|.+++.-+.. +.+. ...+.+-.. -.+..+||..||.||
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 5688999999998888999999999999999998763321 1121 222222211 224566899999997
Q ss_pred CCC----------CCCCcccchHHHHHHHHH--------Hc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 216 FVR----------LPPDLQWTIATQARAYAK--------AM--KATLFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 216 ~~~----------~~~~~~~~~~~~~~~~a~--------~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
+.. +|+-.-....+++..+.+ .. .+=.+.+.|.+-.||+.+|+.+...|.....
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 532 111111112334433322 11 1223458999999999999999998876543
No 320
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.56 E-value=2e-07 Score=75.01 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=62.4
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 241 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 241 (284)
+.+.++.++++|++|+|+|++++.+..+ ..+...+.. ...|+|+|+||+|+ .+.. . .+....+.+..+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~--~~~p~iiv~NK~Dl---~~~~---~-~~~~~~~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE--LGKKLLIVLNKADL---VPKE---V-LEKWKSIKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh--CCCcEEEEEEhHHh---CCHH---H-HHHHHHHHHhCCCc
Confidence 3456677889999999999987654322 122222221 24566899999996 2111 1 11122344446778
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 242 LFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 242 ~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
++.+||+++.|++++++.+...+.
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHh
Confidence 999999999999999999987764
No 321
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=5.2e-07 Score=82.33 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=97.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
-|...|.---|||||+..+.+..-. .....-|.+....-...+-....+.+.|.+|.+++-...-......|..++|.
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 3667888899999999999876544 22222232222223333333346789999999997655555567889999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~ 259 (284)
|.++.-..+..+ -+..+.. -...-.|+|.||+|+ ..+++.....++.........++++.+|+++|+||+++-+.
T Consensus 82 ~~deGl~~qtgE-hL~iLdl-lgi~~giivltk~D~---~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~ 156 (447)
T COG3276 82 AADEGLMAQTGE-HLLILDL-LGIKNGIIVLTKADR---VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNE 156 (447)
T ss_pred eCccCcchhhHH-HHHHHHh-cCCCceEEEEecccc---ccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHH
Confidence 996543322222 1122221 122233899999995 22221111122222222233567899999999999999999
Q ss_pred HHHHHh
Q 023316 260 IMAKLF 265 (284)
Q Consensus 260 l~~~i~ 265 (284)
|....-
T Consensus 157 l~~L~~ 162 (447)
T COG3276 157 LIDLLE 162 (447)
T ss_pred HHHhhh
Confidence 888774
No 322
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.50 E-value=1.6e-07 Score=82.46 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Cc--ccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCc--ccccc------c
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RS--LQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSF--DHVPI------A 168 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~--~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~--~~~~~------~ 168 (284)
-=|+|+|-.|+|||||+++|.+.... .+ ..|..+... ..... |.. +-+-||-|.-.-- .+... -
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h--~a~Lpsg~~--vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLH--SAHLPSGNF--VLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhh--hccCCCCcE--EEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 35899999999999999999965544 22 224443333 33332 333 4478999964321 11111 2
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-----EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 243 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-----Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 243 (284)
...+|.+|.|.|++.++--+.....+..+.+..-...| |=|-||+|.....++ .++++ -+
T Consensus 255 VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~n~--~v 319 (410)
T KOG0410|consen 255 VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEKNL--DV 319 (410)
T ss_pred HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cccCC--cc
Confidence 46899999999999998655555566666554332222 347899995222111 12233 67
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 244 FSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 244 ~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.+||.+|+|.+++.+.+-......
T Consensus 320 ~isaltgdgl~el~~a~~~kv~~~ 343 (410)
T KOG0410|consen 320 GISALTGDGLEELLKAEETKVASE 343 (410)
T ss_pred ccccccCccHHHHHHHHHHHhhhh
Confidence 789999999999988877665543
No 323
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=2.6e-06 Score=80.11 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC--------------------CCCcc----------cccceeeeeEEEEECCeE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--------------------QERSL----------QMAGLNLINKTLMVQGAR 147 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--------------------~~~~~----------~t~~~~~~~~~~~~~~~~ 147 (284)
...+.++++|+-.+|||||+-+++.+- ..-.| .--|+....++..++...
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 356899999999999999999985321 00000 011344444455555666
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHH---HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNS---IVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~---~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
..+.|.|++|+-.|..-.-.-...+|+.++|.|++-.+ .|+. .++... +.+.-.-.-.|++.||.|+.. -++
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~-llr~Lgi~qlivaiNKmD~V~-Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHAL-LLRSLGISQLIVAINKMDLVS-WSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHH-HHHHcCcceEEEEeecccccC-ccH
Confidence 77889999998888765555567899999999987432 1221 122222 222222223379999999631 122
Q ss_pred CcccchHHHHHHHH-HHcC-----CcEEEEcCCCCcCHHHH
Q 023316 222 DLQWTIATQARAYA-KAMK-----ATLFFSSATHNINVNKI 256 (284)
Q Consensus 222 ~~~~~~~~~~~~~a-~~~~-----~~~~~~Sa~~~~~v~~l 256 (284)
++-..+......|. +..| +.|+.||+.+|+|+-..
T Consensus 333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 22233456666666 5555 47999999999997544
No 324
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.48 E-value=7.5e-07 Score=78.42 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=36.5
Q ss_pred ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 205 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 205 ~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
.-++|.||+|| ++... .. .+...+..+.. +++++.+||++|+|++++++|+...
T Consensus 232 ADIVVLNKiDL---l~~~~-~d-le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 232 ASLMLLNKVDL---LPYLN-FD-VEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CcEEEEEhHHc---CcccH-HH-HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34899999997 22111 11 22233333332 5789999999999999999998764
No 325
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.45 E-value=3.1e-07 Score=83.54 Aligned_cols=163 Identities=15% Similarity=0.128 Sum_probs=78.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccccccee---eeeEEEEECCeEEEEEEEeCCCCcCCccccccc-----c
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLN---LINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----C 169 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~---~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~-----~ 169 (284)
..++|+|+|++|+|||||||.|.|-... .....+|+. .....+... ..-.+.+||.+|...-.--...| +
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 3689999999999999999999664333 222233321 111122221 21236799999975433222223 4
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHH-HHHHHhHCCCCceEEEEeCCCC--CC---CCCCCc-ccchHHHHHHHHHH----c
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGW-YSEARKWNQTAIPILIGTKFDD--FV---RLPPDL-QWTIATQARAYAKA----M 238 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~-~~~l~~~~~~~~~Ilv~nK~Dl--~~---~~~~~~-~~~~~~~~~~~a~~----~ 238 (284)
..-|.+|++.+ +.|.+-.-| ..++.+. ..+..+|-+|+|. .+ ..+... +....++.++.+.+ .
T Consensus 113 ~~yD~fiii~s----~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISS----ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEES----SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeC----CCCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 57788888875 334444433 3344432 3455799999992 00 001010 11123344444332 3
Q ss_pred CC---cEEEEcCCCCc--CHHHHHHHHHHHHhCCc
Q 023316 239 KA---TLFFSSATHNI--NVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 239 ~~---~~~~~Sa~~~~--~v~~lf~~l~~~i~~~~ 268 (284)
|+ ++|-+|..+-. +...+.+.+.+.+...+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 43 57778988643 46777777777665443
No 326
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.44 E-value=1.7e-06 Score=71.11 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=49.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCCC--CceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCC
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSAT 248 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~--~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~--~~~~~~~Sa~ 248 (284)
+.-|+|.|++..+-.- ++-.+. .--++|.||.||..+..-. .+...+-+++. +.+++++|++
T Consensus 119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~d-----levm~~da~~~np~~~ii~~n~k 184 (202)
T COG0378 119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGAD-----LEVMARDAKEVNPEAPIIFTNLK 184 (202)
T ss_pred ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCcc-----HHHHHHHHHHhCCCCCEEEEeCC
Confidence 4778888988765310 110111 1127999999983222211 23344444444 4799999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 023316 249 HNINVNKIFKFIMAKL 264 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i 264 (284)
+|+|+++++.|+....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999987654
No 327
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.8e-06 Score=82.10 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC---------ccccc-------ceeeeeE--EEEE---CCeEEEEEEEeCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER---------SLQMA-------GLNLINK--TLMV---QGARIAFSIWDVG 156 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~---------~~~t~-------~~~~~~~--~~~~---~~~~~~l~l~Dt~ 156 (284)
..-.+|.++|.-+.|||+|+..|....... .+..+ |..+... ++.. +++.+.+++.||+
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 345689999999999999999997654321 11111 2222222 2222 5777889999999
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|+..|.......++-+|++++|+|+...-+++.-+ .++...+ .+.+.++|.||+|+
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh--ccCcEEEEEehhHH
Confidence 99999998888999999999999998887775533 2222222 13344799999993
No 328
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=3e-06 Score=83.11 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=81.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC--------------CCCcc---cccceeeeeE--EEEECCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE--------------QERSL---QMAGLNLINK--TLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~--------------~~~~~---~t~~~~~~~~--~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..+|.++|+-.+|||||..+++-.. +.+.. ..-|.++.+. ++...+ ...+.+.||+|+.+
T Consensus 10 ~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGHVD 88 (697)
T COG0480 10 IRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGHVD 88 (697)
T ss_pred ceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCccc
Confidence 5689999999999999999986321 11000 0113333333 334444 57788999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|.......++-+|++++|+|+...-..+.-.-|.+..+. ..|+|++.||+|.
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR 140 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR 140 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence 999999999999999999999877665555566655432 4566999999995
No 329
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.39 E-value=3e-06 Score=73.05 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
...|+++|+.|+||||+++.+.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 3479999999999999999999875
No 330
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.38 E-value=9.3e-07 Score=71.09 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=39.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
..+++++|.+|+|||||++++.+.......++.|.+.....+..++ .+.+|||+|.
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 5789999999999999999999766443334555443322233332 4789999994
No 331
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.34 E-value=1.1e-06 Score=71.90 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=39.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
..++++++|.+|||||||+|++.+..+. ...+.++ .....+.++ ..+.+|||+|.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T--~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVT--KGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEE--eeeEEEEec---CCEEEEECCCC
Confidence 3579999999999999999999998764 3333333 333334443 23679999995
No 332
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.32 E-value=1.4e-06 Score=71.53 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=38.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
.++|+++|.+|||||||+|++.+.+.. +..+.++... ..+.++. .+.++||+|.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~~---~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLDK---KVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeCC---CEEEEECcCC
Confidence 589999999999999999999987764 4445333332 2333432 3679999984
No 333
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.30 E-value=1.9e-06 Score=69.48 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
.++|+++|.+|||||||+|++.+.+.. ...+.++.. ...+..++ . +.+.||+|.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~-~--~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKV--WQYITLMK-R--IYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEe--EEEEEcCC-C--EEEEECcCC
Confidence 578999999999999999999987654 444432222 22223322 2 568999984
No 334
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=9.6e-06 Score=68.97 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=99.0
Q ss_pred EEEEEcCCCC--ChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC--CeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 102 KISLLGDCQI--GKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 102 KI~llG~~~v--GKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
-++|.|-.|| ||.+|+.++....|. ...+.-...++.+++.-. ...+.+.+- .--+.+.-..........+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcis--hicde~~lpn~~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCIS--HICDEKFLPNAEIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEee--cccchhccCCcccccceeeEE
Confidence 4688999999 999999999998888 333444555665654211 112222221 111111111111123456899
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC---------------C---------------------
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL---------------P--------------------- 220 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~---------------~--------------------- 220 (284)
++||.+...++..++.|+..-.-+. -.+.+.+|||.|....- |
T Consensus 84 mvfdlse~s~l~alqdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 9999999999999999987532211 12335789999942210 0
Q ss_pred ---CCcccchHHHHHHHHHHcCCcEEEEcCCC------------CcCHHHHHHHHHHHHh
Q 023316 221 ---PDLQWTIATQARAYAKAMKATLFFSSATH------------NINVNKIFKFIMAKLF 265 (284)
Q Consensus 221 ---~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~------------~~~v~~lf~~l~~~i~ 265 (284)
++-.-.+...+.+|+.++|+.|++.+|.+ -+||+.+|..+.....
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 00000124456789999999999988843 3478999988876553
No 335
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.28 E-value=6.2e-06 Score=75.05 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCC--
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS-- 161 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~-- 161 (284)
+|+.++|.||+|||||.+.+++... . ..||.++.+.....+.+.+.. ..+++.|.+|...-
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7999999999999999999999887 5 667744444444555655432 35789999997652
Q ss_pred --ccccccc---ccCCcEEEEEEeCC
Q 023316 162 --FDHVPIA---CKDAVAILFMFDLT 182 (284)
Q Consensus 162 --~~~~~~~---~~~ad~iilv~d~~ 182 (284)
..+...| ++.+|++++|.+..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2344444 57999999999874
No 336
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=6.9e-06 Score=75.39 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=59.6
Q ss_pred cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcCC---cEEE
Q 023316 170 KDAV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKA---TLFF 244 (284)
Q Consensus 170 ~~ad-~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~~---~~~~ 244 (284)
...+ .+++|+|+.+.. ..|...+.+.....++++|+||+|| ++... .....+..+.+++..|+ .++.
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DL---l~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADL---LPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhh---CCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 4444 889999987743 2466666665555667899999997 33221 11112333445666676 5789
Q ss_pred EcCCCCcCHHHHHHHHHHHH
Q 023316 245 SSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i 264 (284)
+||+++.|++++++.+....
T Consensus 139 vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999997654
No 337
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.23 E-value=5.7e-06 Score=66.64 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=55.7
Q ss_pred cccCCcEEEEEEeCCChhh--HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316 168 ACKDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s--~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 245 (284)
.+.++|++++|.|+.++.. ...+.+++ .......|+|+|.||+|| ++.+ ........+.+.+....+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~~p~ilVlNKiDl---~~~~---~~~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIFVLNKCDL---VPTW---VTARWVKILSKEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCCCCEEEEEEchhc---CCHH---HHHHHHHHHhcCCcEEEEEe
Confidence 4689999999999988643 22333333 222334566999999997 2221 11222333333333334679
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 023316 246 SATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i 264 (284)
||+++.|++++.+.+...+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987653
No 338
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.20 E-value=4.2e-06 Score=74.32 Aligned_cols=152 Identities=11% Similarity=0.100 Sum_probs=81.1
Q ss_pred ChhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--cc----ccccCCCCCCCCCc
Q 023316 1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--YQ----KLTRRSSSESSPAP 74 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--~~----~~~~~~~~~~~~~~ 74 (284)
|+|+++|+.+++.+++..+..+|.|..+..+...+.+.+. ..+.+++-++..-... .. .......+ .-+-.
T Consensus 11 m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~-vi~vS 87 (287)
T PRK09563 11 MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADPEVTKKWIEYFEEQGIK-ALAIN 87 (287)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCe-EEEEE
Confidence 8999999999999999999999999888888766655443 1222333332210000 00 00000000 00000
Q ss_pred cccccccccccc----c---c-CCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEEC
Q 023316 75 DTMEAGLVELSR----T---F-SSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQ 144 (284)
Q Consensus 75 ~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~ 144 (284)
.....+...... . . ............++|+++|.+|||||||+|++.+.+.. +..+.++.. ...+.++
T Consensus 88 a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~ 165 (287)
T PRK09563 88 AKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLG 165 (287)
T ss_pred CCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeC
Confidence 000000000000 0 0 00000111234589999999999999999999998764 444433333 2334444
Q ss_pred CeEEEEEEEeCCCCcC
Q 023316 145 GARIAFSIWDVGGDSR 160 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~ 160 (284)
+ .+.++||+|...
T Consensus 166 ~---~~~l~DtPGi~~ 178 (287)
T PRK09563 166 K---GLELLDTPGILW 178 (287)
T ss_pred C---cEEEEECCCcCC
Confidence 3 366999999853
No 339
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=3.6e-06 Score=74.36 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=80.6
Q ss_pred ChhhHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--cc----ccccCCCCCCCCCc
Q 023316 1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--YQ----KLTRRSSSESSPAP 74 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--~~----~~~~~~~~~~~~~~ 74 (284)
|+|+++|+.+++.+++..+..+|.|..+..+...+.+.+. ..+++++-++..-... .. .......+ .-+-.
T Consensus 8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~-vi~iS 84 (276)
T TIGR03596 8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADPAVTKQWLKYFEEKGIK-ALAIN 84 (276)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCHHHHHHHHHHHHHcCCe-EEEEE
Confidence 8999999999999999999999999888877766555442 1233333332221000 00 00000000 00000
Q ss_pred cccccccccc----ccccCCC----CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEEC
Q 023316 75 DTMEAGLVEL----SRTFSSG----YDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQ 144 (284)
Q Consensus 75 ~~~~~~~~~~----~~~~~~~----~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~ 144 (284)
.....+.... ....... .........++++++|.+|||||||+|++.+.... ...+.+ +.....+.++
T Consensus 85 a~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~--T~~~~~~~~~ 162 (276)
T TIGR03596 85 AKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGV--TKGQQWIKLS 162 (276)
T ss_pred CCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCe--ecceEEEEeC
Confidence 0000000000 0000000 00011123689999999999999999999987754 344432 2223344443
Q ss_pred CeEEEEEEEeCCCCc
Q 023316 145 GARIAFSIWDVGGDS 159 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e 159 (284)
. .+.++||+|.-
T Consensus 163 ~---~~~l~DtPG~~ 174 (276)
T TIGR03596 163 D---GLELLDTPGIL 174 (276)
T ss_pred C---CEEEEECCCcc
Confidence 3 35799999983
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.19 E-value=2.9e-05 Score=69.61 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=86.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCc-----------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERS-----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H 164 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~ 164 (284)
..+.|+++|..|.|||||+|.|++...... .+++.+......+.-+|..+.+.+.||+|.-.+-. .
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 368999999999999999999998744321 12333444444445578889999999999654211 1
Q ss_pred c-----------cccc--------------cCCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 165 V-----------PIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 165 ~-----------~~~~--------------~~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
| ..|+ ...|++|+....+... +..+. ..+.++.+ ..=.|-|..|.|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~---~vNlIPVI~KaD~--- 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK---RVNLIPVIAKADT--- 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc---ccCeeeeeecccc---
Confidence 1 1111 2467888888765432 22222 33444432 2223667889996
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 219 LPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
+..+......+..++-...+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 44443333466666777778888874
No 341
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.15 E-value=1.4e-05 Score=64.30 Aligned_cols=84 Identities=17% Similarity=0.044 Sum_probs=53.5
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 252 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~ 252 (284)
|++|+|+|+.++.+..+ .|+..........|+|+|.||+|| .+.+ ...+....+.+..+..++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl---~~~~---~~~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADL---VPKE---VLRKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhc---CCHH---HHHHHHHHHHhhCCceEEEEeccCCcC
Confidence 68999999988765442 233311111234566899999996 2211 111112233333456788999999999
Q ss_pred HHHHHHHHHHHH
Q 023316 253 VNKIFKFIMAKL 264 (284)
Q Consensus 253 v~~lf~~l~~~i 264 (284)
++++++.+....
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999887653
No 342
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.13 E-value=7.3e-05 Score=67.48 Aligned_cols=142 Identities=13% Similarity=0.174 Sum_probs=85.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCc--------cc--ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERS--------LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------- 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~--------~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------- 162 (284)
.+.++++|+.|.|||||+|.|+...+... .+ |..+......+.-+|..+.+.+.||+|.-+.-
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 58999999999999999999987755422 11 33344443344447889999999999964311
Q ss_pred ------------------cccccccc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 163 ------------------DHVPIACK--DAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 163 ------------------~~~~~~~~--~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
.+.+.-+. ..+++|+....+... +..+. ..+..+. ...-.|-|..|.|. +..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~---~~vNiIPVI~KaD~---lT~ 173 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS---KKVNLIPVIAKADT---LTK 173 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh---ccccccceeecccc---CCH
Confidence 11111222 567888888765431 12221 2333332 22233567889995 443
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
+......+.+.+-....++++|....-
T Consensus 174 ~El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 174 DELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHHHHHcCcceecCCCC
Confidence 333333566667777788887764443
No 343
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.13 E-value=3.3e-06 Score=72.85 Aligned_cols=156 Identities=13% Similarity=0.129 Sum_probs=89.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-C-cccccceeeeeEEEEECCeEEEEEEEeCCCC----------cCCcccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDHV 165 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------e~~~~~~ 165 (284)
.....++++|..|||||||++.++..+.. . ..++.|..-....+.++ ..+.+.|.+|- +.+..+.
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~t 210 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKFT 210 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHhH
Confidence 34688999999999999999999887765 2 22233432222222222 34567899982 2234455
Q ss_pred cccccCCc---EEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHH---HHHH--
Q 023316 166 PIACKDAV---AILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQ---ARAY-- 234 (284)
Q Consensus 166 ~~~~~~ad---~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~---~~~~-- 234 (284)
..|+.+-+ -+.+..|+..+ .+-.....|+.+ .++| .+|.||||................ ...+
T Consensus 211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 55654333 33444555433 122333467654 5566 699999996433331111111110 1111
Q ss_pred -HHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 235 -AKAMKATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 235 -a~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
......+++.+|+.++.|+++++..+.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 1122356778999999999998877654
No 344
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.10 E-value=3.4e-05 Score=69.48 Aligned_cols=157 Identities=15% Similarity=0.103 Sum_probs=93.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--------------ccceeeeeEEEEECC----------------
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--------------MAGLNLINKTLMVQG---------------- 145 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--------------t~~~~~~~~~~~~~~---------------- 145 (284)
....+.|.+.|.-..|||||+-.|+.++.. .+-. ....++.-..+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 344788999999999999999999766544 1111 011112112222221
Q ss_pred -----eEEEEEEEeCCCCcCCcc--cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 146 -----ARIAFSIWDVGGDSRSFD--HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 146 -----~~~~l~l~Dt~G~e~~~~--~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
..-.+.+.||.|+|.|-. +...+=...|-.+++.-+++.-+--. ++-+--+. .-.-|.|++.||+|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~--- 267 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDM--- 267 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEeccc---
Confidence 113467999999999743 44445568899999998877654211 11111110 123455899999997
Q ss_pred CCCCcccchHHHHHHHHHH----------------------cC---CcEEEEcCCCCcCHHHHHHH
Q 023316 219 LPPDLQWTIATQARAYAKA----------------------MK---ATLFFSSATHNINVNKIFKF 259 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~----------------------~~---~~~~~~Sa~~~~~v~~lf~~ 259 (284)
.++++...+.++..++.+. .+ +|+|.+|+.+|+|++-+.+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~ 333 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF 333 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH
Confidence 4555444444444443331 11 58899999999997654333
No 345
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.10 E-value=7.3e-06 Score=70.54 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC------CCC----C-ccccc----------------ceeeeeEEEEECC-------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN------EQE----R-SLQMA----------------GLNLINKTLMVQG------- 145 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~------~~~----~-~~~t~----------------~~~~~~~~~~~~~------- 145 (284)
.+.|-+-|.||+|||||+..|... +.. + +.+-+ ..+.+.+.+--.|
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls~ 108 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLSR 108 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCccH
Confidence 468899999999999999998521 100 0 11111 1223333333222
Q ss_pred -----------eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 146 -----------ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 146 -----------~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
..+.+.|.+|.|--+..- ....-+|.+++|.-....+..+.++.= +.+. .-|+|.||.|
T Consensus 109 ~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaG---imEi----aDi~vVNKaD 178 (266)
T PF03308_consen 109 ATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAG---IMEI----ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TT---HHHH-----SEEEEE--S
T ss_pred hHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhh---hhhh----ccEEEEeCCC
Confidence 124466777766332111 124578999999877665554443311 1111 2299999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 215 DFVRLPPDLQWTIATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~a~~-------~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+ +... ....+.+..... +..+++.|||.++.|++++++.+.+..
T Consensus 179 ~----~gA~--~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 179 R----PGAD--RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp H----HHHH--HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred h----HHHH--HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3 2211 112222222221 124788999999999999999887643
No 346
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.07 E-value=1e-05 Score=71.66 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=61.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC---------------eEEEEEEEeCCCCcC--
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG---------------ARIAFSIWDVGGDSR-- 160 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~~l~l~Dt~G~e~-- 160 (284)
..+|+-++|.||||||||.|.+.+.... ..+|-.+++-....+.+.. ....++++|+||..+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4789999999999999999999998877 7788444333333444322 235689999999765
Q ss_pred --Ccccccccc---cCCcEEEEEEeC
Q 023316 161 --SFDHVPIAC---KDAVAILFMFDL 181 (284)
Q Consensus 161 --~~~~~~~~~---~~ad~iilv~d~ 181 (284)
-..+...|+ +.+|+++.|.++
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRA 124 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEe
Confidence 345666664 688999988866
No 347
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=3.2e-05 Score=69.32 Aligned_cols=110 Identities=15% Similarity=0.128 Sum_probs=71.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEE------ECCeE------------------------
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLM------VQGAR------------------------ 147 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~------~~~~~------------------------ 147 (284)
=|+++|.-+.||||+++.++.++|.. ..||+. +....+. ++|..
T Consensus 60 mill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 48999999999999999999998872 223331 1111110 11110
Q ss_pred ---------EEEEEEeCCCCcC-----------CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE
Q 023316 148 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 207 (284)
Q Consensus 148 ---------~~l~l~Dt~G~e~-----------~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I 207 (284)
-.+.+.||+|.-. |.....=|...+|.|+++||....+--.+....+..++.+ ...+=
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~--EdkiR 215 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH--EDKIR 215 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC--cceeE
Confidence 1378999999533 3334445778999999999987665445555666666543 22334
Q ss_pred EEEeCCCC
Q 023316 208 LIGTKFDD 215 (284)
Q Consensus 208 lv~nK~Dl 215 (284)
||.||.|.
T Consensus 216 VVLNKADq 223 (532)
T KOG1954|consen 216 VVLNKADQ 223 (532)
T ss_pred EEeccccc
Confidence 89999993
No 348
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=2.4e-05 Score=68.11 Aligned_cols=164 Identities=10% Similarity=0.102 Sum_probs=98.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC---C-------CC--Cccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN---E-------QE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~---~-------~~--~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
....+|..+|.-.-|||||...+..- . |. ...| .-|+.+....+.+.-.+-.+...|++|+.+|-
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 34789999999999999998887421 1 11 1111 23555555555554444456688999999875
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC-CCcccchHHHHHHHHHHcCC
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKA 240 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~a~~~~~ 240 (284)
.-.-.-..+.|+.|+|.+.++.-.-+.-...+ ..++ -..|- ++..||+|+ .+ ++....++.+.+++..++++
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-larq--vGvp~ivvflnK~Dm---vdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHIL-LARQ--VGVPYIVVFLNKVDM---VDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-hhhh--cCCcEEEEEEecccc---cCcHHHHHHHHHHHHHHHHHcCC
Confidence 43333345789999999988743222211111 1111 12333 588999997 33 23334457888999998875
Q ss_pred -----cEEEEcCCCC-c-------CHHHHHHHHHHHHhCC
Q 023316 241 -----TLFFSSATHN-I-------NVNKIFKFIMAKLFNL 267 (284)
Q Consensus 241 -----~~~~~Sa~~~-~-------~v~~lf~~l~~~i~~~ 267 (284)
|++.-||..- + .|.++++.+-..+-..
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 4666666532 1 2455555555555433
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1.1e-05 Score=72.80 Aligned_cols=57 Identities=12% Similarity=0.261 Sum_probs=42.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
...++.++|-||||||||+|+|.+.... +..| |.+-....+.++.. +.++||+|.--
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P--G~Tk~~q~i~~~~~---i~LlDtPGii~ 189 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP--GTTKGIQWIKLDDG---IYLLDTPGIIP 189 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC--ceecceEEEEcCCC---eEEecCCCcCC
Confidence 3578999999999999999999998865 4445 44444445555433 67999999754
No 350
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.01 E-value=2.7e-05 Score=66.70 Aligned_cols=85 Identities=16% Similarity=0.314 Sum_probs=60.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----c---ccccccccCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----F---DHVPIACKDA 172 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----~---~~~~~~~~~a 172 (284)
-||-++|.|++|||||+..+.+..-. ..+..+........+.+++.+ +++.|.+|.-+- . ...-...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 48999999999999999999887655 555544444444555666655 679999996542 1 1222345789
Q ss_pred cEEEEEEeCCChhhH
Q 023316 173 VAILFMFDLTSRCTL 187 (284)
Q Consensus 173 d~iilv~d~~~~~s~ 187 (284)
+.+++|.|+..+-+-
T Consensus 138 nli~~vld~~kp~~h 152 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSH 152 (358)
T ss_pred cEEEEEeeccCcccH
Confidence 999999999876543
No 351
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=97.98 E-value=4.7e-05 Score=64.54 Aligned_cols=156 Identities=10% Similarity=0.162 Sum_probs=89.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC---------ccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER---------SLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------- 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~---------~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------- 162 (284)
.++|+|+|.+|.|||||+|.+....... .++ |+........+.-+|.++++.+.||+|.-+.-
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 6899999999999999999997654331 222 44444444555557888999999999954311
Q ss_pred -------cccccc------------cc--CCcEEEEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 163 -------DHVPIA------------CK--DAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 163 -------~~~~~~------------~~--~ad~iilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
.....| +. ..+++++....+..+ +.-+. .+++.+.+- .-+|-|..|.|- +.
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhs-LrplDieflkrLt~v---vNvvPVIakaDt---lT 198 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHS-LRPLDIEFLKRLTEV---VNVVPVIAKADT---LT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCc-cCcccHHHHHHHhhh---heeeeeEeeccc---cc
Confidence 111122 22 356777777666432 22222 445555332 122557789993 33
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
-+.+..-.+.+++-...+++.+|.--+.+-+.=+..++.-++
T Consensus 199 leEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 199 LEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 332333355566666778888776444433322333443333
No 352
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.98 E-value=1.2e-05 Score=66.80 Aligned_cols=53 Identities=11% Similarity=0.230 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC---------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ---------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~---------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
..++++|.+|||||||+|.+.+... . +..+.++ .....+.++. .+.++||+|.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcCC
Confidence 5799999999999999999997543 1 2333222 2233444432 3579999994
No 353
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.98 E-value=2.6e-05 Score=61.65 Aligned_cols=76 Identities=16% Similarity=0.131 Sum_probs=51.8
Q ss_pred ccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 167 IACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
..+.++|++++|+|+.++.+.. .+..|+... ..+.++|+|.||+|| .+++ ...+..++.+..+..+++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL---~~~~----~~~~~~~~~~~~~~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL---LTEE----QRKAWAEYFKKEGIVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc---CCHH----HHHHHHHHHHhcCCeEEE
Confidence 4578999999999998876544 444555433 234566899999996 2211 123344555666788999
Q ss_pred EcCCCCcC
Q 023316 245 SSATHNIN 252 (284)
Q Consensus 245 ~Sa~~~~~ 252 (284)
+||.++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99998764
No 354
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.97 E-value=0.00014 Score=63.67 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cc
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WT 226 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~ 226 (284)
+.+.|.+|.|--+... ....-+|.++++-=..-.+..+-++ .-+.+. --|+|.||.|+ ..... ..
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK---~GimEi----aDi~vINKaD~----~~A~~a~r 209 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIK---AGIMEI----ADIIVINKADR----KGAEKAAR 209 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHH---hhhhhh----hheeeEeccCh----hhHHHHHH
Confidence 4566777776543221 1234678888876544444443333 222211 12899999994 22110 00
Q ss_pred hHHHHHHHH----HHc--CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 227 IATQARAYA----KAM--KATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 227 ~~~~~~~~a----~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
....+..+. ... .-+.+.|||.+|+|++++++.+....
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~ 253 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR 253 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence 011111111 112 24789999999999999999988654
No 355
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.96 E-value=2.7e-05 Score=81.47 Aligned_cols=108 Identities=17% Similarity=0.094 Sum_probs=65.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC-Cc----cc--ccceeeeeEEEEECCeEEEEEEEeCCCCc--------CCcccccc
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE-RS----LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPI 167 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~-~~----~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e--------~~~~~~~~ 167 (284)
.+|||++|+|||||+++- |-+|. .. .. +.+.+. .....+.+.- .++||+|.- .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence 679999999999999987 44554 21 11 111111 0112223333 388999932 12233444
Q ss_pred cc---------cCCcEEEEEEeCCChh-----hH----HHHHHHHHHHHhHCCCCceE-EEEeCCCC
Q 023316 168 AC---------KDAVAILFMFDLTSRC-----TL----NSIVGWYSEARKWNQTAIPI-LIGTKFDD 215 (284)
Q Consensus 168 ~~---------~~ad~iilv~d~~~~~-----s~----~~~~~~~~~l~~~~~~~~~I-lv~nK~Dl 215 (284)
|+ +..+++|+++|+.+-- .. ..++..++++.+...-..|| |+.||+|+
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 43 4689999999986432 11 23456677777765656664 99999997
No 356
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=0.00014 Score=66.72 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc--C--------------CCC-Ccc----cccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG--N--------------EQE-RSL----QMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~--~--------------~~~-~~~----~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
+-..++|-.|-+|||||-.+++- + .+. ++. ..-|+.+.+..+..+-....+.|.||+|+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 44578999999999999999841 1 010 000 01144444444444444466789999999
Q ss_pred cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD 215 (284)
Q Consensus 159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl 215 (284)
++|..-+..-+.-+|.+++|.|+...-.-+. .++.+-.+- ..+| +-..||.|.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl---R~iPI~TFiNKlDR 145 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL---RDIPIFTFINKLDR 145 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh---cCCceEEEeecccc
Confidence 9999888778889999999999976543222 233333322 3455 578999994
No 357
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.91 E-value=4.2e-05 Score=65.48 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=51.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC--CCC--Ccc-c-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---c---ccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE--RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---H---VPI 167 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~--~~~--~~~-~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~---~~~ 167 (284)
..-|.|+|.+++|||+|+|++++. .|. ... + |.|+-.....+.. +....+.+.||.|...... . .-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 345779999999999999999998 666 222 2 4454433322221 3346688999999875322 1 112
Q ss_pred cccC--CcEEEEEEeCCC
Q 023316 168 ACKD--AVAILFMFDLTS 183 (284)
Q Consensus 168 ~~~~--ad~iilv~d~~~ 183 (284)
.+.. ++.+|+..+.+.
T Consensus 86 ~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 86 ALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHhCEEEEeccCcc
Confidence 2233 677777666543
No 358
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.90 E-value=3.3e-05 Score=62.08 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=37.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
..+++++|.+|+|||||+|.+.+.... +..+.++.+.. .+.++ ..+.+.||+|.
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCCC
Confidence 578999999999999999999987643 33343333322 23333 23679999984
No 359
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=0.0002 Score=64.43 Aligned_cols=157 Identities=13% Similarity=0.160 Sum_probs=91.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCC------------------------cccccceeeeeEEEEECC-------
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER------------------------SLQMAGLNLINKTLMVQG------- 145 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~------------------------~~~t~~~~~~~~~~~~~~------- 145 (284)
...+++++++|...+|||||+--+..++..+ ....+|.|-..+.+.+..
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 3457999999999999999988876544321 111335554444444432
Q ss_pred ---eEEEEEEEeCCCCcCCccccccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 146 ---ARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 146 ---~~~~l~l~Dt~G~e~~~~~~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
....+.+.|.+|+.+|....-+-+. ..|..++|.+.+...++.. ++-+--+.. -+.|..++.+|+||.....
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A--L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA--LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH--hCCCeEEEEEeeccccchh
Confidence 2244779999999998765444332 4566777777766554322 112222221 1445579999999742200
Q ss_pred CC-------------------cccchHHHHHHHHHHc----CCcEEEEcCCCCcCHHHH
Q 023316 221 PD-------------------LQWTIATQARAYAKAM----KATLFFSSATHNINVNKI 256 (284)
Q Consensus 221 ~~-------------------~~~~~~~~~~~~a~~~----~~~~~~~Sa~~~~~v~~l 256 (284)
-+ .....++++-..+++. -.|+|.+|..+|++++-+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 00 0001133333333332 358888999999997654
No 360
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.76 E-value=4.9e-05 Score=62.12 Aligned_cols=89 Identities=15% Similarity=0.030 Sum_probs=58.1
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
....+.++|.+++|+|+.++.+..+ ..+.+.+ ...++|+|.||+|| .++ .. .....++.+..+..++.
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~----~~k~~ilVlNK~Dl---~~~---~~-~~~~~~~~~~~~~~vi~ 80 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL----GNKPRIIVLNKADL---ADP---KK-TKKWLKYFESKGEKVLF 80 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh----cCCCEEEEEehhhc---CCh---HH-HHHHHHHHHhcCCeEEE
Confidence 3456789999999999987654221 1122222 24567999999996 221 11 11122333334557889
Q ss_pred EcCCCCcCHHHHHHHHHHHHh
Q 023316 245 SSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+||+++.|++++.+.+...+.
T Consensus 81 iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 81 VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999999888763
No 361
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00036 Score=67.08 Aligned_cols=113 Identities=12% Similarity=0.215 Sum_probs=69.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc----------ee------------------------------
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG----------LN------------------------------ 135 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~----------~~------------------------------ 135 (284)
....||++.|+.+.||||++|.++.++.- ...+++. .+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34689999999999999999999876644 2222221 00
Q ss_pred ---eeeEEEEECCeE-----EEEEEEeCCCCcC---CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC
Q 023316 136 ---LINKTLMVQGAR-----IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA 204 (284)
Q Consensus 136 ---~~~~~~~~~~~~-----~~l~l~Dt~G~e~---~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~ 204 (284)
...+ +.++... -.+.+.|.+|-.- ..+-...++.++|++|+|.+..+..+..+-. ++....+ .+
T Consensus 187 ~~~sLlr-V~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~-Ff~~vs~---~K 261 (749)
T KOG0448|consen 187 GAGSLLR-VFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQ-FFHKVSE---EK 261 (749)
T ss_pred CcceEEE-EEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHH-HHHHhhc---cC
Confidence 0000 1111110 1255677777654 3344556788999999999887776655533 3333322 23
Q ss_pred ceE-EEEeCCCC
Q 023316 205 IPI-LIGTKFDD 215 (284)
Q Consensus 205 ~~I-lv~nK~Dl 215 (284)
|-| ++-||+|.
T Consensus 262 pniFIlnnkwDa 273 (749)
T KOG0448|consen 262 PNIFILNNKWDA 273 (749)
T ss_pred CcEEEEechhhh
Confidence 445 88899995
No 362
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.74 E-value=9.5e-05 Score=65.12 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCcCCccccc------------ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVP------------IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~------------~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
+.+.+.||+|........- ..-..+|..++|.|.+.. .+.+. +...+.+.. .+--+|.||.|.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlDe 229 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLDG 229 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccCC
Confidence 5678999999865322110 111248899999999743 22322 222222211 223599999993
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
... .-.+...+...+.|+.+++ +|++++++-
T Consensus 230 ------~~~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 230 ------TAK---GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred ------CCC---ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 111 2334555666789988887 788887763
No 363
>PRK12288 GTPase RsgA; Reviewed
Probab=97.72 E-value=4.7e-05 Score=69.33 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cce--eeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
++++|.+|||||||+|+|++.... ...+. -|. +.....+.+++.. .++||+|...+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999999977533 22221 111 1112233443222 389999998864
No 364
>PRK12289 GTPase RsgA; Reviewed
Probab=97.70 E-value=6.8e-05 Score=68.33 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=35.0
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cc--eeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
++|+|.+|||||||+|.|++.... ...+. -| .+.....+.+++.. .|.||+|...+
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccc
Confidence 799999999999999999976533 22221 01 11122333443222 48899998654
No 365
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.68 E-value=4.1e-05 Score=61.81 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=33.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
-++++|..|||||||+|.+.+.... ...+ . .| .......+.+++.. .+.||+|...+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 5889999999999999999987422 1111 1 11 11123344453322 378999987754
No 366
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.68 E-value=0.0002 Score=63.30 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=58.4
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
....+..+|++|+|.|+.++.+..+ .++.++. ...+.|+|.||+|| .+.. . .+...++.+..+.+++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL---~~~~---~-~~~~~~~~~~~~~~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADL---ADPA---V-TKQWLKYFEEKGIKALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEcccc---CCHH---H-HHHHHHHHHHcCCeEEE
Confidence 3446789999999999977654322 1222222 24566899999996 2211 1 11112222334667899
Q ss_pred EcCCCCcCHHHHHHHHHHHHhC
Q 023316 245 SSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+||+++.|++++.+.+...+.+
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999888777643
No 367
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00016 Score=70.08 Aligned_cols=108 Identities=19% Similarity=0.264 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC------------CC---CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE------------QE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~------------~~---~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
.-+|+++-.-.-|||||...++... |. .+.++-|++.....+..-.+.+.+.+.|++|+.+|.+.
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 4578999999999999999996532 22 22235566666556655556688999999999999999
Q ss_pred ccccccCCcEEEEEEeCCChhhHHH---HH-HHHHHHHhHCCCCceEEEEeCCC
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNS---IV-GWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~---~~-~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
.....+-+|++++..|+...-.-+. ++ -|. ....||+|.||+|
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~-------~~~~~~lvinkid 135 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWI-------EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHH-------ccCceEEEEehhh
Confidence 9999999999999999875433222 22 243 3457799999999
No 368
>PRK01889 GTPase RsgA; Reviewed
Probab=97.64 E-value=0.00033 Score=64.11 Aligned_cols=84 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
..++|.+++|.++...-....+..++..+... +.+|+||.||+||. ++. . ...+....+ ..+.+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL~---~~~-~-~~~~~~~~~--~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADLC---EDA-E-EKIAEVEAL--APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhcC---CCH-H-HHHHHHHHh--CCCCcEEEEECC
Confidence 57899999999997555555666776665543 45779999999972 221 1 111222222 457889999999
Q ss_pred CCcCHHHHHHHHH
Q 023316 249 HNINVNKIFKFIM 261 (284)
Q Consensus 249 ~~~~v~~lf~~l~ 261 (284)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888764
No 369
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.64 E-value=0.0001 Score=64.01 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=36.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--Ccccc-c--c--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM-A--G--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t-~--~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
.++++|.+|||||||+|++.+.... ...+. . | .+.....+..++. .++||+|...+.
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCccccC
Confidence 6889999999999999999976432 22221 1 1 1112223333332 489999987653
No 370
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.57 E-value=0.0017 Score=53.18 Aligned_cols=86 Identities=16% Similarity=0.054 Sum_probs=58.9
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 225 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~ 225 (284)
..+.+.+.||++... ......+..+|.++++...+ ..+...+..+++.+++.. .+..+|.||+|. . .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~--~~~~vV~N~~~~----~----~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG--IPVGVVINKYDL----N----D 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC--CCEEEEEeCCCC----C----c
Confidence 356788999997643 23345668899999999876 446667777777666542 234699999993 1 1
Q ss_pred chHHHHHHHHHHcCCcEEE
Q 023316 226 TIATQARAYAKAMKATLFF 244 (284)
Q Consensus 226 ~~~~~~~~~a~~~~~~~~~ 244 (284)
...++.++++++.+++++.
T Consensus 158 ~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 158 EIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred chHHHHHHHHHHcCCCeEE
Confidence 1245677788888887653
No 371
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.57 E-value=0.00082 Score=60.51 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCCcCCccc--------cc---cc-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316 147 RIAFSIWDVGGDSRSFDH--------VP---IA-CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKF 213 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~--------~~---~~-~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~ 213 (284)
.+.+.+.||+|....... .. .. -...+..++|.|++... .+..+..+.+. -.+--+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~------~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEA------VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhh------CCCCEEEEECC
Confidence 356889999998653221 11 11 12467788999987532 22222222111 12336999999
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|. ... .-.+...+...++|+..++ +|++++++
T Consensus 270 D~------t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DG------TAK---GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CC------CCC---ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 93 111 2334555677799999887 78888877
No 372
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00057 Score=64.51 Aligned_cols=139 Identities=17% Similarity=0.264 Sum_probs=80.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+-++|+|++|+|||||+..++..--..... ..| -...+.|+.-.+.++.++ ....++.. ..+-||.+|
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeE
Confidence 346788899999999999999987542211111 112 112345777778888887 33333332 346789999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-E-EEEeCCCCCCCCCCCcccchHHH--HHHHHHHc-CCcEEEEcCCCC
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-I-LIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAM-KATLFFSSATHN 250 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-I-lv~nK~Dl~~~~~~~~~~~~~~~--~~~~a~~~-~~~~~~~Sa~~~ 250 (284)
+..|.+-.-..+. ..+++-+..+ +.| | -|+++.||+...+. -+..... .+-|-+-+ |+.+|..|...+
T Consensus 139 LlIdgnfGfEMET-mEFLnil~~H---GmPrvlgV~ThlDlfk~~st--Lr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 139 LLIDGNFGFEMET-MEFLNILISH---GMPRVLGVVTHLDLFKNPST--LRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred EEeccccCceehH-HHHHHHHhhc---CCCceEEEEeecccccChHH--HHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 9999865432222 2345544433 344 4 79999998522111 1112221 12333333 788888887654
No 373
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.55 E-value=0.00066 Score=63.24 Aligned_cols=141 Identities=16% Similarity=0.161 Sum_probs=74.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHh------cCCCC----Cccc------------ccceeeeeEEEEEC-------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYV------GNEQE----RSLQ------------MAGLNLINKTLMVQ------------- 144 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~------~~~~~----~~~~------------t~~~~~~~~~~~~~------------- 144 (284)
..-|+++|.+||||||++..+. +.+.. +.+. ..+..+....-.-+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 3468899999999999999885 22211 1111 01112111000000
Q ss_pred CeEEEEEEEeCCCCcCCcc-----cccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 145 GARIAFSIWDVGGDSRSFD-----HVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~-----~~~~-~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
...+.+.|.||+|...... +... .....+-+++|.|.+-...- ....+.+.+. -.+--+|.||.|.
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~--- 251 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDG--- 251 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccC---
Confidence 0135778999999765321 1111 12356889999998654321 1222222211 1233699999993
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .+ --.+...+...+.|+.+++. |++++++
T Consensus 252 ---~-ar--gG~aLs~~~~t~~PI~fig~--Ge~v~Dl 281 (429)
T TIGR01425 252 ---H-AK--GGGALSAVAATKSPIIFIGT--GEHIDDF 281 (429)
T ss_pred ---C-CC--ccHHhhhHHHHCCCeEEEcC--CCChhhc
Confidence 1 11 22244555666777776643 5666554
No 374
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=6.4e-05 Score=65.80 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=94.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC---CCCccc---ccceeee-eEEEEEC--------------------------
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QERSLQ---MAGLNLI-NKTLMVQ-------------------------- 144 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~---~~~~~~---t~~~~~~-~~~~~~~-------------------------- 144 (284)
...++|--+|.-.-||||++..+.+-. |..+.. |+..-|. .+.+..+
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 347899999999999999999886532 221111 2211110 0111111
Q ss_pred Ce--E----EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 145 GA--R----IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 145 ~~--~----~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
|. + -.+.+.|++|++-.-...-.-..-.|+.++....+..+.-....+-+..+.-. .-..++++-||+||
T Consensus 116 g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDl--- 191 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL--- 191 (466)
T ss_pred CCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhh---
Confidence 00 0 23578899998763221111112235666666554433221111222222111 12345789999998
Q ss_pred CCCCcccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 219 LPPDLQWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
..+....+..++...|.+.- +++++.+||.-..|++-+.+.++..|.-...
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 33333333355566666543 6799999999999999999999999865543
No 375
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.52 E-value=0.00045 Score=61.37 Aligned_cols=89 Identities=16% Similarity=0.068 Sum_probs=58.5
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
....+..+|++|+|.|..++.+.++ .++.++. ...+.|+|.||+|| .+.. . .+...++.+..+.+++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL---~~~~---~-~~~~~~~~~~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDL---ADPE---V-TKKWIEYFEEQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhc---CCHH---H-HHHHHHHHHHcCCeEEE
Confidence 3446789999999999977654322 2222222 24566899999996 2211 1 11222223344677899
Q ss_pred EcCCCCcCHHHHHHHHHHHHh
Q 023316 245 SSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+||+++.|++++.+.+...+.
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred EECCCcccHHHHHHHHHHHHH
Confidence 999999999999988877664
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=97.48 E-value=0.00019 Score=65.91 Aligned_cols=55 Identities=11% Similarity=0.243 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
.++.++|.+|||||||+|++.+... . +..|.++.+ ...+.+++. ..++||+|...
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi~~ 222 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGIIH 222 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCccc
Confidence 4799999999999999999986431 1 333433333 233444332 25999999854
No 377
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.48 E-value=0.0038 Score=50.06 Aligned_cols=55 Identities=31% Similarity=0.535 Sum_probs=39.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 156 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 156 (284)
.+||.+-|.||||||||+.++...--...+.-.| +....+.-+|+.+-|.+.|++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEcc
Confidence 6899999999999999999986432212222222 445566667888888888887
No 378
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.47 E-value=0.00016 Score=66.24 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC------C-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
.++.++|.+|||||||+|++.+... . +..|.++.+.. .+.+++. +.++||+|....
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~~ 217 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIINS 217 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCCh
Confidence 4899999999999999999998542 2 34443333322 3344222 459999998653
No 379
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=4.4e-05 Score=65.32 Aligned_cols=183 Identities=15% Similarity=0.265 Sum_probs=109.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCccccccccc----CC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACK----DA 172 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~----~a 172 (284)
..+.-|++.|..++ |++++++...+-....+|...+|....-.-.+ .+-...+|+.+|......+...-++ ..
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 34667888887654 89999887665444445555554322211122 2223579999987764433322221 22
Q ss_pred cEEEEEEeCCChhh-HHHHHHHHHHHH----------------------hH---------------CCCCce-EEEEeCC
Q 023316 173 VAILFMFDLTSRCT-LNSIVGWYSEAR----------------------KW---------------NQTAIP-ILIGTKF 213 (284)
Q Consensus 173 d~iilv~d~~~~~s-~~~~~~~~~~l~----------------------~~---------------~~~~~~-Ilv~nK~ 213 (284)
-.+|++.|+++++. +-.+...++.++ +. .+-.+| ++||.|.
T Consensus 121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY 200 (363)
T KOG3929|consen 121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY 200 (363)
T ss_pred hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence 35788999998753 222222222221 10 011234 6999999
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCCCC
Q 023316 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEPII 282 (284)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~ 282 (284)
|.+..+..+.++..-.-.+.+|..+|+..+..|.+-..=.+.+-..+.+..+..+....--.+..||++
T Consensus 201 DvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~~~s~~vD~NkPlf 269 (363)
T KOG3929|consen 201 DVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKSKSICVDQNKPLF 269 (363)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcCCcceeecCCCceE
Confidence 988777777777777778889999999888888875554455555666666766655444444455553
No 380
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.46 E-value=0.00072 Score=61.97 Aligned_cols=144 Identities=20% Similarity=0.167 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC---CC-Ccccccceeee----------------eEEEEEC-C----------eEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE---QE-RSLQMAGLNLI----------------NKTLMVQ-G----------ARIA 149 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~---~~-~~~~t~~~~~~----------------~~~~~~~-~----------~~~~ 149 (284)
--++++|++||||||++.++...- +. ...--+..|.+ .....+. + ....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 368899999999999999986431 11 00000000100 0000111 0 1345
Q ss_pred EEEEeCCCCcCCcccc----ccc--ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCC-CCc-e-EEEEeCCCCCCCC
Q 023316 150 FSIWDVGGDSRSFDHV----PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQ-TAI-P-ILIGTKFDDFVRL 219 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~----~~~--~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~-~~~-~-Ilv~nK~Dl~~~~ 219 (284)
+.++||+|...+.... ... .....-.++|.+.+.. +...++..-+..+..... ..+ + =+|.||.|-
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE---- 293 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE---- 293 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc----
Confidence 7799999977543221 111 1234456888888764 333433222222211111 112 2 388999992
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
. ...-.+..++...+.++.+++. |++|.|
T Consensus 294 --t---~~~G~~l~~~~~~~lPi~yvt~--Gq~VPe 322 (374)
T PRK14722 294 --A---SNLGGVLDTVIRYKLPVHYVST--GQKVPE 322 (374)
T ss_pred --C---CCccHHHHHHHHHCcCeEEEec--CCCCCc
Confidence 1 1234456667777888777653 666543
No 381
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.43 E-value=0.00017 Score=63.98 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=37.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
-.++++|.+|||||||+|.+.+.... ...+ + .| .+.....+...+. ..++||+|...+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCccC
Confidence 46899999999999999999986543 2121 1 11 1222223333322 2489999998753
No 382
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.001 Score=59.21 Aligned_cols=149 Identities=11% Similarity=0.120 Sum_probs=92.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcC-------CCCC-----c---ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGN-------EQER-----S---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~-------~~~~-----~---~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
+...++|--||.-.-|||||-..+..- ++.. . ...-|+.+....+.+.-..-.+.-.|++|+.+|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 445788999999999999998877421 1111 1 113356666666666555555667899999987
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-cccchHHHHHHHHHHcC-
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMK- 239 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~a~~~~- 239 (284)
-.-.-.-...-|+.|+|+..+|...-+. ++-+-..++-. -.-+++..||.|+ .+++ ....++-+++++..++|
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQVG-V~~ivvfiNKvD~---V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQVG-VKHIVVFINKVDL---VDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHcC-CceEEEEEecccc---cCCHHHHHHHHHHHHHHHHHcCC
Confidence 5433333457799999999988643222 11111122221 1222577899997 4232 23334778889888886
Q ss_pred ----CcEEEEc---CCCC
Q 023316 240 ----ATLFFSS---ATHN 250 (284)
Q Consensus 240 ----~~~~~~S---a~~~ 250 (284)
+|++.=| |..+
T Consensus 206 ~Gd~~PvI~GSAL~ALeg 223 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEG 223 (449)
T ss_pred CCCCCCeeecchhhhhcC
Confidence 5677744 4455
No 383
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.40 E-value=0.0016 Score=57.48 Aligned_cols=94 Identities=11% Similarity=0.092 Sum_probs=64.6
Q ss_pred cccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 240 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (284)
..+.+--..+.|-.++++.+.+++ +..-+.+++-.+.. ....||++.||+|| ++++... .++.....+..|.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~--~gi~pvIvlnK~DL---~~~~~~~--~~~~~~~y~~~gy 142 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA--GGIEPVIVLNKIDL---LDDEEAA--VKELLREYEDIGY 142 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH--cCCcEEEEEEcccc---CcchHHH--HHHHHHHHHhCCe
Confidence 334444445677778888877775 45555666554433 35677999999997 3332221 1456667788899
Q ss_pred cEEEEcCCCCcCHHHHHHHHHH
Q 023316 241 TLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 241 ~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
+.+.+|++++.+++++...+..
T Consensus 143 ~v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 143 PVLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred eEEEecCcCcccHHHHHHHhcC
Confidence 9999999999999998877653
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.0017 Score=61.76 Aligned_cols=135 Identities=13% Similarity=0.110 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--------CCC----Ccccc------------cceeeeeEEEEE---------CCeE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN--------EQE----RSLQM------------AGLNLINKTLMV---------QGAR 147 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~--------~~~----~~~~t------------~~~~~~~~~~~~---------~~~~ 147 (284)
-.|+|+|..|+||||++..|... +.. +.+.. .++.+. ...- .-..
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~--~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH--EADSAESLLDLLERLRD 428 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE--ecCcHHHHHHHHHHhcc
Confidence 46889999999999999888642 110 11110 011111 0000 0023
Q ss_pred EEEEEEeCCCCcCCccc-ccc--ccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDH-VPI--ACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~-~~~--~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
+.+.|.||+|....... ... .+. .....++|.+.+. +..++...++.+.. ..+--+|.||.|. .
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDE------t 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDE------T 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcC------c
Confidence 56889999997543211 100 010 1234566777653 34444444444432 2333699999993 1
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 223 LQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
. ..-.+.......+.++.+++. |++|
T Consensus 498 -~--~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 498 -G--RFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred -c--chhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 1 234556666777888777654 6666
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.38 E-value=0.0011 Score=60.11 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=55.1
Q ss_pred EEEEEEeCCCCcCCcc-cc---ccc--ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~---~~~--~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+.+.|.||+|...... +. ..+ .-..|.+++|.|.+... ..+.+..+.+. -.+--+|.||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~~~giIlTKlD~----- 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VGIDGVILTKVDA----- 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CCCCEEEEeeecC-----
Confidence 4578999999875321 11 111 12578889999986543 22222222211 1233699999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
. .. .-.+...+...+.|+.+++ +|++++++-
T Consensus 292 -~-~~--~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 292 -D-AK--GGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred -C-CC--ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 1 11 2234455556788988887 699998874
No 386
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00019 Score=60.24 Aligned_cols=39 Identities=26% Similarity=0.131 Sum_probs=27.9
Q ss_pred HHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhCC
Q 023316 229 TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 229 ~~~~~~a~~~~~~~~~--~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
..++.+|-.-.+-.|- |||.+.+-+.|+++-+....-+.
T Consensus 146 AIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 146 AIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred HHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 4455555554555553 99999999999999887776544
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.35 E-value=0.0012 Score=53.36 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 579999999999999998765
No 388
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0014 Score=60.99 Aligned_cols=150 Identities=18% Similarity=0.228 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCC------C------Ccccccce-------eeeeEEEE-EC-----------CeEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQ------E------RSLQMAGL-------NLINKTLM-VQ-----------GARIA 149 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~------~------~~~~t~~~-------~~~~~~~~-~~-----------~~~~~ 149 (284)
-+|+++|..|+||||++..+.+... . +.+...+. +.....+. +. -....
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~d 271 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGKH 271 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCCC
Confidence 4799999999999999998765310 0 00000000 00000000 00 01234
Q ss_pred EEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 150 FSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
+.+.||+|....... ...+. ....-.++|.|.+... +.+..++..+ ..-.+-=+|.||.|- .
T Consensus 272 ~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~f---~~~~~~~~I~TKlDE------t- 339 (420)
T PRK14721 272 MVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISAY---QGHGIHGCIITKVDE------A- 339 (420)
T ss_pred EEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHHh---cCCCCCEEEEEeeeC------C-
Confidence 679999997763221 11121 2345677888887432 2333333332 222222499999993 1
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023316 224 QWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN 266 (284)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~ 266 (284)
...-.+..++...+.++..++ +|++| +++ -+.+++.++.
T Consensus 340 --~~~G~~l~~~~~~~lPi~yvt--~Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 340 --ASLGIALDAVIRRKLVLHYVT--NGQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred --CCccHHHHHHHHhCCCEEEEE--CCCCchhhhhhCCHHHHHHHHhc
Confidence 123446667777888887764 47777 444 2345555554
No 389
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.28 E-value=0.017 Score=53.40 Aligned_cols=159 Identities=11% Similarity=0.189 Sum_probs=92.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc-----------------CCCCC-----cccccceeeeeE---EEEE-CCeEEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG-----------------NEQER-----SLQMAGLNLINK---TLMV-QGARIAFSIW 153 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~-----------------~~~~~-----~~~t~~~~~~~~---~~~~-~~~~~~l~l~ 153 (284)
.+=|-|+|+-.+|||||+.||.. ++..+ ..-|+.+.|... .+.+ ++..+.+.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46789999999999999999952 12211 111333333322 3344 5778889999
Q ss_pred eCCCCcC-------------C-ccccc---------------cccc--CCcEEEEEEeCC----ChhhHHHHH-HHHHHH
Q 023316 154 DVGGDSR-------------S-FDHVP---------------IACK--DAVAILFMFDLT----SRCTLNSIV-GWYSEA 197 (284)
Q Consensus 154 Dt~G~e~-------------~-~~~~~---------------~~~~--~ad~iilv~d~~----~~~s~~~~~-~~~~~l 197 (284)
|+.|--- . ..-|. ..+. ..-++++.-|.+ .++.|.+.. +.+++|
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9987311 0 00010 0111 122555555543 356665554 566666
Q ss_pred HhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 198 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 198 ~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
++. .+|.|++.|-.+ .......+.+.++.++++++.+.+++. +-+-+++..-+-..+++-|
T Consensus 177 k~i--gKPFvillNs~~-------P~s~et~~L~~eL~ekY~vpVlpvnc~-~l~~~DI~~Il~~vLyEFP 237 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTK-------PYSEETQELAEELEEKYDVPVLPVNCE-QLREEDITRILEEVLYEFP 237 (492)
T ss_pred HHh--CCCEEEEEeCCC-------CCCHHHHHHHHHHHHHhCCcEEEeehH-HcCHHHHHHHHHHHHhcCC
Confidence 554 457688888877 223334666788888999999998875 3334444444444444433
No 390
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.28 E-value=0.0018 Score=59.37 Aligned_cols=150 Identities=15% Similarity=0.203 Sum_probs=79.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC-CCccccc---cee---------------eeeEEEEE--C----------CeEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-ERSLQMA---GLN---------------LINKTLMV--Q----------GARI 148 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~-~~~~~t~---~~~---------------~~~~~~~~--~----------~~~~ 148 (284)
.-.|+++|+.||||||-+-+|...-. ......+ ..| .+...+.+ + =...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 34688999999999998877743322 1111111 111 11111111 1 0235
Q ss_pred EEEEEeCCCCcCCcccc----ccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce--EEEEeCCCCCCCCC
Q 023316 149 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP--ILIGTKFDDFVRLP 220 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~----~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~--Ilv~nK~Dl~~~~~ 220 (284)
.+.|.||+|...+.... ..|+. ...-+.+|++.+... +++...++.+ . ..+ =++.||.|-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f---~--~~~i~~~I~TKlDE----- 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF---S--LFPIDGLIFTKLDE----- 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh---c--cCCcceeEEEcccc-----
Confidence 68899999988765322 22332 233445666665433 3444444443 2 233 399999992
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhCC
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFNL 267 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~lf----~~l~~~i~~~ 267 (284)
....-....+..+.+.|+-.+ .+|++| ++++ .++++.+...
T Consensus 351 ----T~s~G~~~s~~~e~~~PV~Yv--T~GQ~VPeDI~va~~~~Lv~~~~g~ 396 (407)
T COG1419 351 ----TTSLGNLFSLMYETRLPVSYV--TNGQRVPEDIVVANPDYLVRRILGT 396 (407)
T ss_pred ----cCchhHHHHHHHHhCCCeEEE--eCCCCCCchhhhcChHHHHHHHhcc
Confidence 222444555566666665554 357776 3343 4566665544
No 391
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.27 E-value=0.00034 Score=65.27 Aligned_cols=57 Identities=18% Similarity=0.273 Sum_probs=43.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
.+-|-+||-|||||||+||.|+|.+-.+-..|-|-+-+-.++.+... +.+.|++|..
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence 57888999999999999999999987755555555544456655432 4588999965
No 392
>PRK00098 GTPase RsgA; Reviewed
Probab=97.27 E-value=0.00038 Score=62.14 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=35.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--Ccccc---cce--eeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
.++++|.+|||||||+|.+.+.... ...+. .|. ......+.+++. ..+.||+|...+
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCC---cEEEECCCcCcc
Confidence 5889999999999999999876533 22211 111 111223333322 258999998764
No 393
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.25 E-value=0.00047 Score=60.85 Aligned_cols=58 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCC--Cccc-c--cc--eeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
-.+++|.+|||||||+|++...... ...+ . -| .+.....+.+++.. .|.||+|...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4679999999999999999863321 2211 1 11 12223344553222 277999998754
No 394
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.21 E-value=0.0016 Score=51.32 Aligned_cols=104 Identities=12% Similarity=0.041 Sum_probs=60.6
Q ss_pred EEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCCh
Q 023316 105 LLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 184 (284)
Q Consensus 105 llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~ 184 (284)
.-|.+|+|||++...+...--.....+.-+|.... .....+.+.++|+++... ......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~---~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLG---LANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCC---CCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-h
Confidence 45689999999976663221111111121221100 011116678999987533 33456788999999999875 4
Q ss_pred hhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 185 CTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 185 ~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
.++......++.+.+........+|.|+++
T Consensus 79 ~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 79 TSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 445555555555554433344469999998
No 395
>PRK13695 putative NTPase; Provisional
Probab=97.21 E-value=0.0085 Score=48.92 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
+||+|.|.+|+|||||+..+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998653
No 396
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.16 E-value=0.0058 Score=52.74 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=32.7
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 183 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~ 183 (284)
.+.|+.+|.+||..-+.-|-+.+.+..++|+|...++
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 4669999999999988899999999999999987654
No 397
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.16 E-value=0.00066 Score=63.63 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=52.9
Q ss_pred EEEEEeCCCCcCCccc-----cc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCC
Q 023316 149 AFSIWDVGGDSRSFDH-----VP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP 221 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~-----~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~ 221 (284)
.+.|.||+|....... .. ...-.+|.+++|.|.+... +....... ......+ -+|.||.|-
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~---F~~~l~i~gvIlTKlD~------ 244 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKA---FHEAVGIGGIIITKLDG------ 244 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHH---HHhcCCCCEEEEecccC------
Confidence 6789999997664311 11 1133678899999986642 22222222 2222223 488999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .+ --.+...+...+.|+.+++. |++++++
T Consensus 245 ~-a~--~G~~ls~~~~~~~Pi~fig~--Ge~v~Dl 274 (437)
T PRK00771 245 T-AK--GGGALSAVAETGAPIKFIGT--GEKIDDL 274 (437)
T ss_pred C-Cc--ccHHHHHHHHHCcCEEEEec--CCCcccC
Confidence 1 11 23456667777888877654 5555544
No 398
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.14 E-value=0.0031 Score=58.44 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=72.0
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh----------hHHHHHHHHHHHHhH--CCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC----------TLNSIVGWYSEARKW--NQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~----------s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl 215 (284)
..+.++|++||...+.-|-+++.+.+++|+|.++++-+ .+.+.-...+.+-.. -...++||+.||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 45789999999988999999999999999999986421 122222223333221 224555899999995
Q ss_pred CCC-----------CCCCccc--chHHHHHHHHHHc------------CCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 216 FVR-----------LPPDLQW--TIATQARAYAKAM------------KATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 216 ~~~-----------~~~~~~~--~~~~~~~~~a~~~------------~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+.. .|+-.-. ...+.+..+.+.. .+-++.|+|.+..++..+|+.+...|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 311 1111011 1234444443321 12345699999999999999887653
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.14 E-value=0.0013 Score=53.73 Aligned_cols=83 Identities=16% Similarity=0.064 Sum_probs=45.1
Q ss_pred EEEEEEeCCCCcCCcc----ccccc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD----HVPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~----~~~~~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
..+.+.||+|...+.. ....+ ....+.+++|.|..... +...+...+.+... .--+|.||.|..
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~----- 152 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGD----- 152 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCC-----
Confidence 4467899999753211 11111 12489999999986433 22234444433322 335778999941
Q ss_pred CcccchHHHHHHHHHHcCCcEEE
Q 023316 222 DLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
. ....+...+...++|+..
T Consensus 153 --~--~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 153 --A--RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred --C--CcchhhhhHHHHCcCeEe
Confidence 1 122233366666776654
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0019 Score=59.47 Aligned_cols=139 Identities=17% Similarity=0.257 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC----CCC------Cccc------------ccceeeeeEE--------EE-EC-CeEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN----EQE------RSLQ------------MAGLNLINKT--------LM-VQ-GARI 148 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~----~~~------~~~~------------t~~~~~~~~~--------~~-~~-~~~~ 148 (284)
.+|+++|.+||||||++..+... ... +.+. ..++.+.... +. .. ...+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~ 321 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 321 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCC
Confidence 57999999999999999998531 100 1110 0011111000 00 00 0125
Q ss_pred EEEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 149 AFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
.+.|.||+|....... ...++ ...+.+++|.|.+... +++..+++.+ ..-.+-=+|.||.|- .
T Consensus 322 DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F---~~~~idglI~TKLDE------T 390 (436)
T PRK11889 322 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------T 390 (436)
T ss_pred CEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHh---cCCCCCEEEEEcccC------C
Confidence 6789999998653211 11222 2356788888875332 2333444443 221222499999993 1
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 223 LQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
. ..-.+..++...+.|+..++ +|++|.+
T Consensus 391 -~--k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 391 -A--SSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred -C--CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 1 13345666777788877764 3666644
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0016 Score=59.58 Aligned_cols=92 Identities=12% Similarity=0.147 Sum_probs=51.3
Q ss_pred EEEEEEeCCCCcCCccc----cccccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDH----VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~----~~~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
+.+.|.||+|....... ...+.. ..+.+++|.+.+. ...++..+++. +..-.+--+|.||.|-
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l~i~glI~TKLDE------ 354 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEIPIDGFIITKMDE------ 354 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcCCCCEEEEEcccC------
Confidence 56789999998653221 111221 3456667766532 23333333333 2222222599999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
. ...-.+..++...+.|+..+|. |++|.+
T Consensus 355 T---~~~G~~Lsv~~~tglPIsylt~--GQ~Vpd 383 (407)
T PRK12726 355 T---TRIGDLYTVMQETNLPVLYMTD--GQNITE 383 (407)
T ss_pred C---CCccHHHHHHHHHCCCEEEEec--CCCCCc
Confidence 1 1134466677778888877754 666654
No 402
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.03 E-value=0.0023 Score=47.45 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=50.8
Q ss_pred EEEEc-CCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 103 ISLLG-DCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 103 I~llG-~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
|++.| .+|+||||+...+...--....+..-.|. + ..+.+.++|+++.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~-------d-~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDL-------D-PQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeC-------C-CCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56777 78999999877664321111112222221 1 1156789999986542 233667889999999876
Q ss_pred CChhhHHHHHHHHH
Q 023316 182 TSRCTLNSIVGWYS 195 (284)
Q Consensus 182 ~~~~s~~~~~~~~~ 195 (284)
+ ..++..+..+++
T Consensus 72 ~-~~s~~~~~~~~~ 84 (104)
T cd02042 72 S-PLDLDGLEKLLE 84 (104)
T ss_pred C-HHHHHHHHHHHH
Confidence 4 556677766665
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.02 E-value=0.0085 Score=56.16 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCcCCc----cccccccc---CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSF----DHVPIACK---DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~----~~~~~~~~---~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
..+.|.||+|..... .....++. ...-+.+|.+.+-.. .++...+..+ ..-.+-=+|.||.|-
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f---~~~~~~~vI~TKlDe----- 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF---SRLPLDGLIFTKLDE----- 369 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh---CCCCCCEEEEecccc-----
Confidence 567899999986543 11222222 234667778775432 2333333333 211122499999992
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN 266 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~ 266 (284)
......+..++...+.++..++. |++| +++ -+.+++.++.
T Consensus 370 ----t~~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~~ll~ 414 (424)
T PRK05703 370 ----TSSLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVRLLLG 414 (424)
T ss_pred ----cccccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHHHhc
Confidence 11234567777788888877654 6776 444 2334555554
No 404
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=96.99 E-value=0.0033 Score=41.33 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 171 DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 171 ~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
-.+++++++|.+..+ |.++....+++++..-.+.|.++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 357899999998765 56666688999998877778899999998
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.0037 Score=62.11 Aligned_cols=151 Identities=17% Similarity=0.172 Sum_probs=79.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC-C-Cc-c-ccccee---------------eeeEEE-EEC-----------CeEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ-E-RS-L-QMAGLN---------------LINKTL-MVQ-----------GARIAF 150 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~-~-~~-~-~t~~~~---------------~~~~~~-~~~-----------~~~~~l 150 (284)
-|+++|..||||||++.++.+.-. . .. . .-+..| .....+ ... -....+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 578999999999999999875321 1 10 0 000000 000000 000 022357
Q ss_pred EEEeCCCCcCCcc-cc---ccc--ccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 151 SIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 151 ~l~Dt~G~e~~~~-~~---~~~--~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
.|.||+|...... +. ... ....+-.++|.|.+.. +.+.++ .+.+.......+-=+|.||.|- .
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDE------t- 336 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDE------A- 336 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCC------C-
Confidence 8999999543221 11 111 1234567888888743 334333 2333221111122489999992 1
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhC
Q 023316 224 QWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFN 266 (284)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~lf----~~l~~~i~~ 266 (284)
. ..-.+..+....++|+.+++ +|++| +++. +.+++.++.
T Consensus 337 ~--~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 337 T--HLGPALDTVIRHRLPVHYVS--TGQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred C--CccHHHHHHHHHCCCeEEEe--cCCCChhhcccCCHHHHHHHHhc
Confidence 1 13445666777788887765 47888 5652 345566655
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.90 E-value=0.0031 Score=52.82 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCcCCccc----ccccc--cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~----~~~~~--~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+.+.+.||+|...+... ...++ ...+-+++|.|.+... ..+.+...++. -.+-=+|.||.|.
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~------~~~~~lIlTKlDe----- 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEA------FGIDGLILTKLDE----- 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHH------SSTCEEEEESTTS-----
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhc------ccCceEEEEeecC-----
Confidence 45779999997664321 11111 2567888888887654 23322222221 1223578999992
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .. .-.+..++...+.|+-.+|- |++|+++
T Consensus 153 -t-~~--~G~~l~~~~~~~~Pi~~it~--Gq~V~Dl 182 (196)
T PF00448_consen 153 -T-AR--LGALLSLAYESGLPISYITT--GQRVDDL 182 (196)
T ss_dssp -S-ST--THHHHHHHHHHTSEEEEEES--SSSTTGE
T ss_pred -C-CC--cccceeHHHHhCCCeEEEEC--CCChhcC
Confidence 1 11 34466677778888777654 6666443
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.89 E-value=0.0037 Score=59.19 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=55.6
Q ss_pred EEEEEeCCCCcCCccc---ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 149 AFSIWDVGGDSRSFDH---VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~---~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
.+.+.||+|....... .-..+.. ..-.++|.|.+... ..+.+. +..+....+-=+|.||.|-
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i---~~~f~~~~~~g~IlTKlDe------- 403 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEV---VQAYRGPGLAGCILTKLDE------- 403 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHH---HHHhccCCCCEEEEeCCCC-------
Confidence 4679999995443210 0011111 22367888876432 222222 2222322333588999992
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhCC
Q 023316 223 LQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFNL 267 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l----f~~l~~~i~~~ 267 (284)
....-.+..++...++++.+++ +|++| +++ -+.+++.++..
T Consensus 404 --t~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 404 --AASLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred --cccchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 1124456677777888887764 47788 665 33455666553
No 408
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.89 E-value=0.0035 Score=46.96 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred EEEEc-CCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 103 ISLLG-DCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 103 I~llG-~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
|+++| .+|+||||+...+...--.. ...+...|..... +. .+.+.|+++.... .....+..+|.++++.+
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~~--D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~ 73 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----GD--DYVVVDLGRSLDE--VSLAALDQADRVFLVTQ 73 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----CC--CEEEEeCCCCcCH--HHHHHHHHcCeEEEEec
Confidence 34444 89999999877764322111 2222222222110 11 5779999986542 33446788999999987
Q ss_pred CCChhhHHHHHHHHHHHHhHCCC--CceEEEEeC
Q 023316 181 LTSRCTLNSIVGWYSEARKWNQT--AIPILIGTK 212 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~~~--~~~Ilv~nK 212 (284)
.+ ..++..+..+++.+++.... ....+|.|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 54 55677777777777665432 233477775
No 409
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.0027 Score=59.32 Aligned_cols=111 Identities=16% Similarity=0.222 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC------------CCCC---cccccceeeeeEEEEE----------------CCeEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN------------EQER---SLQMAGLNLINKTLMV----------------QGARIA 149 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~------------~~~~---~~~t~~~~~~~~~~~~----------------~~~~~~ 149 (284)
-++.++-.-.-|||||-..|+.. +|.+ +.+.-|+.+.+..+.. ++..+.
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 45778889999999999998632 1221 1112233333322221 345678
Q ss_pred EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 150 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
+.+.|.+|+.+|.+.....++-.|+.++|.|.-+.-..+.-.-+.+.+ .....|+++.||.|
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~---~ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI---AERIKPVLVMNKMD 161 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH---HhhccceEEeehhh
Confidence 999999999999999999999999999999987754333322222333 23567899999999
No 410
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.82 E-value=0.0093 Score=50.76 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=34.6
Q ss_pred EEEEeC-CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 150 FSIWDV-GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 150 l~l~Dt-~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
+.+.|| ||.|.|. +.-.+++|.+|+|.|.+. .|+....+. .+|.+...-.++.+|.||+|
T Consensus 136 ~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri-~~L~~elg~k~i~~V~NKv~ 196 (255)
T COG3640 136 VVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERI-KELAEELGIKRIFVVLNKVD 196 (255)
T ss_pred EEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHH-HHHHHHhCCceEEEEEeecc
Confidence 455565 4444432 223478999999999864 444443333 22222222234459999999
No 411
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=96.79 E-value=0.0072 Score=54.66 Aligned_cols=31 Identities=16% Similarity=0.468 Sum_probs=24.9
Q ss_pred CCCCCceeeEEEEEcCCCCChHHHHHHHhcC
Q 023316 93 DTDSDLVSLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 93 ~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
....+-.+.+|+++|...+|||||+--+...
T Consensus 126 ~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHg 156 (641)
T KOG0463|consen 126 PTEKDFIEARVAVVGNVDAGKSTLLGVLTHG 156 (641)
T ss_pred CCCccceeEEEEEEecccCCcceeEeeeeec
Confidence 3445666899999999999999998777544
No 412
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.77 E-value=0.0019 Score=52.73 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 155 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt 155 (284)
||++-|++|+|||||+++++..--....+..| |....+.-+|..+-|.+.|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v~G--f~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPVGG--FYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGEEE--EEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCccce--EEeecccCCCceEEEEEEEC
Confidence 68999999999999999987432112222223 23333334555555666665
No 413
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.74 E-value=0.0051 Score=49.07 Aligned_cols=58 Identities=12% Similarity=0.008 Sum_probs=34.1
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
.+.+.|.||+|.... . ..++..+|-+|++....-.+.+ .-....+. ..--+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~--~-~~~~~~Ad~~ivv~tpe~~D~y---~~~k~~~~----~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS--E-VDIASMADTTVVVMAPGAGDDI---QAIKAGIM----EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh--h-hhHHHhCCEEEEEECCCchhHH---HHhhhhHh----hhcCEEEEeCCC
Confidence 356889999996532 2 2488899988888765422221 11111111 122389999987
No 414
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.73 E-value=0.003 Score=54.93 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=43.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCccccc---ceeeeeEEEEE--CCeEEEEEEEeCCCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA---GLNLINKTLMV--QGARIAFSIWDVGGD 158 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~---~~~~~~~~~~~--~~~~~~l~l~Dt~G~ 158 (284)
..++|+.+|..|.|||||+..+.+-.|.....+. ++.+...++.+ .+..+.+.+.||.|.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 3689999999999999999999998887332222 23333333333 567788999999994
No 415
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.70 E-value=0.0067 Score=49.94 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=47.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEe--CC-CCcCCcccccccccCCcEEEEE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD--VG-GDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D--t~-G~e~~~~~~~~~~~~ad~iilv 178 (284)
.++++|+.|+|||||++.+.+-.. ++.| .+.+++..+.+..-+ .+ |+.+.-.+....+.+.+.+++=
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~----p~~G------~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLD 96 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLI----PNGD------NDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFD 96 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCC----CCCc------EEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 688999999999999999987543 2222 233444333221111 22 3333334555566677665552
Q ss_pred --EeCCChhhHHHHHHHHHHHH
Q 023316 179 --FDLTSRCTLNSIVGWYSEAR 198 (284)
Q Consensus 179 --~d~~~~~s~~~~~~~~~~l~ 198 (284)
...-|..+.+.+.+|+.++.
T Consensus 97 EPts~LD~~~~~~l~~~l~~~~ 118 (177)
T cd03222 97 EPSAYLDIEQRLNAARAIRRLS 118 (177)
T ss_pred CCcccCCHHHHHHHHHHHHHHH
Confidence 11224455555556666554
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.69 E-value=0.012 Score=55.20 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCcCCcc-ccc---c--cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HVP---I--ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~~---~--~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
+.+.|.||+|...... +.. . ..-..+.+++|.|.+.. ++...+...+.... .+-=+|.||.|-
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i~giIlTKlD~------ 251 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GLTGVVLTKLDG------ 251 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CCCEEEEeCccC------
Confidence 5578999999654321 111 1 12357888999998643 33334444443221 122488999992
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. . ..-.+...+...++|+.+++. |++++++
T Consensus 252 ~-~--~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 252 D-A--RGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred c-c--cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 1 1 123367777788898887655 5556554
No 417
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.68 E-value=0.013 Score=55.55 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=39.4
Q ss_pred EEEEeCCCCcC-------------CcccccccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhHCCCCce-EEEEeCCC
Q 023316 150 FSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIP-ILIGTKFD 214 (284)
Q Consensus 150 l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv~d~~~~~s-~~~~~~~~~~l~~~~~~~~~-Ilv~nK~D 214 (284)
..+.|.+|.-. ...+...|+.+.++||+|.--.+-+. -..+.+.... ..+.+.- |+|.+|.|
T Consensus 414 MVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVsq---~DP~GrRTIfVLTKVD 490 (980)
T KOG0447|consen 414 MVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVSQ---MDPHGRRTIFVLTKVD 490 (980)
T ss_pred eEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHHh---cCCCCCeeEEEEeecc
Confidence 56788888432 23456778999999999984322221 1223333332 2444444 99999999
Q ss_pred CC
Q 023316 215 DF 216 (284)
Q Consensus 215 l~ 216 (284)
|.
T Consensus 491 lA 492 (980)
T KOG0447|consen 491 LA 492 (980)
T ss_pred hh
Confidence 74
No 418
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=96.68 E-value=0.0019 Score=54.66 Aligned_cols=66 Identities=23% Similarity=0.212 Sum_probs=39.9
Q ss_pred CCceEEEEeCCCCCCC----------CCCCc-ccchHHHHHHHHHHc----C-----C-cEEEEcCCCCcCHHHHHHHHH
Q 023316 203 TAIPILIGTKFDDFVR----------LPPDL-QWTIATQARAYAKAM----K-----A-TLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 203 ~~~~Ilv~nK~Dl~~~----------~~~~~-~~~~~~~~~~~a~~~----~-----~-~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
+..+|+..||.||-+. +|+.. .....+.+++|.-.+ + + --.++.|.+.+|+.-+|..+-
T Consensus 266 nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVk 345 (359)
T KOG0085|consen 266 NSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVK 345 (359)
T ss_pred CCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHH
Confidence 4566899999996322 11111 111234445554332 2 1 124588999999999999998
Q ss_pred HHHhCCc
Q 023316 262 AKLFNLP 268 (284)
Q Consensus 262 ~~i~~~~ 268 (284)
..+++..
T Consensus 346 DtiLq~~ 352 (359)
T KOG0085|consen 346 DTILQLN 352 (359)
T ss_pred HHHHHhh
Confidence 8887654
No 419
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.62 E-value=0.0033 Score=57.46 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--------CCC-Ccc--------cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN--------EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~--------~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
-+|-++..-.+||||.-.|++.- ... .+. ..-|+.+.+..+.++=+...+.+.||+|+.+|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 46778889999999998887421 111 111 1124555555555555556688999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD 215 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl 215 (284)
....+++--|+++.|||.+-.-.-+.+.-|.+. ..-.+| +...||+|.
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqa----dk~~ip~~~finkmdk 166 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA----DKFKIPAHCFINKMDK 166 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhc----cccCCchhhhhhhhhh
Confidence 899999999999999999876655566677654 223455 788999994
No 420
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.58 E-value=0.011 Score=55.07 Aligned_cols=137 Identities=15% Similarity=0.171 Sum_probs=71.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC-CC----------Cccc------------ccceeeeeEE-E-----EECCeEEEEE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE-QE----------RSLQ------------MAGLNLINKT-L-----MVQGARIAFS 151 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~-~~----------~~~~------------t~~~~~~~~~-~-----~~~~~~~~l~ 151 (284)
.-++++|.+||||||++.+|.... .. +.+. ..++.+.... . .+......+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 458899999999999999986421 00 0100 0111111000 0 0011234567
Q ss_pred EEeCCCCcCCcc-c---cccccc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 152 IWDVGGDSRSFD-H---VPIACK-----DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 152 l~Dt~G~e~~~~-~---~~~~~~-----~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
+.||+|...... . ...+++ ...-.++|.|.+... +++...+. .+..-.+-=+|.||.|- .
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~---~f~~~~~~glIlTKLDE------t 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLK---AYESLNYRRILLTKLDE------A 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHH---HhcCCCCCEEEEEcccC------C
Confidence 999999764221 1 111221 234678888887653 22222222 22212222599999992 1
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 223 LQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
. ..-.+..++...+.|+..++. |++|
T Consensus 373 -~--~~G~il~i~~~~~lPI~ylt~--GQ~V 398 (432)
T PRK12724 373 -D--FLGSFLELADTYSKSFTYLSV--GQEV 398 (432)
T ss_pred -C--CccHHHHHHHHHCCCEEEEec--CCCC
Confidence 1 133456667777888777654 5554
No 421
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.58 E-value=0.018 Score=46.79 Aligned_cols=84 Identities=8% Similarity=-0.028 Sum_probs=50.7
Q ss_pred EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 228 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~ 228 (284)
.+.++|+++.... .....+..+|.+|++.+.+ ..++..+..+++.+.+.. .....+|.|+.|- . .....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~iv~N~~~~----~---~~~~~ 132 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-IKVVGVIVNRVRP----D---MVEGG 132 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CceEEEEEeCCcc----c---ccchh
Confidence 5789999876442 2344568899999998765 345666666666665522 2223589999983 1 11112
Q ss_pred HHHHHHHHHcCCcEE
Q 023316 229 TQARAYAKAMKATLF 243 (284)
Q Consensus 229 ~~~~~~a~~~~~~~~ 243 (284)
+....+.+.++.+++
T Consensus 133 ~~~~~~~~~~~~~v~ 147 (179)
T cd02036 133 DMVEDIEEILGVPLL 147 (179)
T ss_pred hHHHHHHHHhCCCEE
Confidence 223445555676654
No 422
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.57 E-value=0.014 Score=41.78 Aligned_cols=68 Identities=15% Similarity=0.214 Sum_probs=43.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc-ccccccCCcEEEEEEeC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL 181 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~-~~~~~~~ad~iilv~d~ 181 (284)
+++.|.+|+|||++...+...--...+ +...++ .+.+.|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999998887543111111 222223 5678999887653321 14456788999999876
Q ss_pred CC
Q 023316 182 TS 183 (284)
Q Consensus 182 ~~ 183 (284)
..
T Consensus 69 ~~ 70 (99)
T cd01983 69 EA 70 (99)
T ss_pred ch
Confidence 54
No 423
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.027 Score=52.13 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=53.9
Q ss_pred EEEEEEEeCCCCcCCccc----ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316 147 RIAFSIWDVGGDSRSFDH----VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~----~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~ 219 (284)
.+.+.+.||+|....... ...++.. ..-.++|.|.+... +++...++. +..-.+-=+|.||.|-
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~---~~~~~~~~~I~TKlDe---- 324 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQ---FSPFSYKTVIFTKLDE---- 324 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHH---hcCCCCCEEEEEeccC----
Confidence 356789999997653321 1112221 22578999987653 333433333 3322233599999992
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH
Q 023316 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI 256 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v-~~l 256 (284)
. ...-.+..++...+.|+..++ +|++| +++
T Consensus 325 --t---~~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl 355 (388)
T PRK12723 325 --T---TCVGNLISLIYEMRKEVSYVT--DGQIVPHNI 355 (388)
T ss_pred --C---CcchHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence 1 113445666777788877664 47777 454
No 424
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0041 Score=58.82 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=31.5
Q ss_pred CcccccccccCCcEEEEEEe-CCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 161 SFDHVPIACKDAVAILFMFD-LTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d-~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
.-++.+.+++++..++ +| +|+.-.-+.-.+.++.+.....+...|+|+.-.|+.
T Consensus 495 rvslaRa~lKda~Il~--~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll 549 (591)
T KOG0057|consen 495 RVSLARAFLKDAPILL--LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLL 549 (591)
T ss_pred HHHHHHHHhcCCCeEE--ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhH
Confidence 4455556677766544 44 333222222345666677666666778888888863
No 425
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.45 E-value=0.017 Score=50.77 Aligned_cols=138 Identities=16% Similarity=0.225 Sum_probs=75.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC----CC------Cccc------------ccceeeeeEEEE----------E-CCeE
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE----QE------RSLQ------------MAGLNLINKTLM----------V-QGAR 147 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~----~~------~~~~------------t~~~~~~~~~~~----------~-~~~~ 147 (284)
-+++++|.+|+||||++..+...- .. ..+. ..+..+... .. . ....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~-~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAV-RDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEec-CCHHHHHHHHHHHHhcCC
Confidence 589999999999999988774321 10 0000 011111100 00 0 0013
Q ss_pred EEEEEEeCCCCcCCcc-c---ccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-H---VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~---~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
+.+.+.||+|...... . ...++ -..+-+++|.|.+... +++..++..+ ..-.+-=+|.||.|-
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f---~~~~~~~~I~TKlDe------ 223 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------ 223 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHh---CCCCCCEEEEEeecC------
Confidence 5678999999875321 1 11122 2456688999876432 2333444433 322222599999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
. . ..-.+..++...+.|+..++ +|++|.+
T Consensus 224 t-~--~~G~~l~~~~~~~~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 224 T-A--SSGELLKIPAVSSAPIVLMT--DGQDVKK 252 (270)
T ss_pred C-C--CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 1 1 12345566677788877764 4666653
No 426
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.39 E-value=0.0028 Score=48.17 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+|+|.|.+||||||+.+.+...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999753
No 427
>PRK08118 topology modulation protein; Reviewed
Probab=96.38 E-value=0.0029 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
||+|+|.+|+|||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999988653
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=96.37 E-value=0.036 Score=52.00 Aligned_cols=92 Identities=15% Similarity=0.103 Sum_probs=51.9
Q ss_pred EEEEEEeCCCCcCCcc-ccc---cc--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP 220 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~~---~~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~ 220 (284)
+.+.|.||+|...... +.. .+ .-..+.+++|.|.+.. ++.......+.+ ...+ =+|.||.|-
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~---~~~i~giIlTKlD~----- 252 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE---ALGLTGVILTKLDG----- 252 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh---hCCCCEEEEeCccC-----
Confidence 5678999999654321 111 11 1256778999997643 233333333332 1222 478899992
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .+ .-.+...+...++|+.+++. |++++++
T Consensus 253 -~-~r--gG~alsi~~~~~~PI~fig~--Ge~v~DL 282 (433)
T PRK10867 253 -D-AR--GGAALSIRAVTGKPIKFIGT--GEKLDDL 282 (433)
T ss_pred -c-cc--ccHHHHHHHHHCcCEEEEeC--CCccccC
Confidence 1 11 23366677778888877655 5555544
No 429
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.36 E-value=0.0075 Score=56.07 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..+|+|+|.+|+|||||++.|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999754
No 430
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.32 E-value=0.0074 Score=53.33 Aligned_cols=60 Identities=10% Similarity=0.082 Sum_probs=37.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-------CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
..++.+.|+|-||||||||+|.+...... ...+..+..+.. .+.+.... .+.+.||+|.-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGil 207 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGIL 207 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCcC
Confidence 34789999999999999999988554332 222322322221 13343332 26689999963
No 431
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=96.32 E-value=0.061 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=18.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
.+|-|.-|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 457799999999999999854
No 432
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.30 E-value=0.091 Score=44.28 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=50.7
Q ss_pred EEEEEEEeCCCCcCCcccc-cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCce-EEEEeCCCCCCCCCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIP-ILIGTKFDDFVRLPPD 222 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~-~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~-Ilv~nK~Dl~~~~~~~ 222 (284)
.+.+.+.|+.|.-....+. ....+.+|.+|++.+.+ ..++..+...++.++.... +... -++.|+.+. .
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~------~ 188 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT------D 188 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC------c
Confidence 3567788886654322221 11124789999998763 4555555544444444332 2223 389999993 1
Q ss_pred cccchHHHHHHHHHHcCCcEEE
Q 023316 223 LQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
...+..+++.+.++.+++.
T Consensus 189 ---~~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 189 ---RETELIDAFAERLGTQVIH 207 (212)
T ss_pred ---cHHHHHHHHHHHcCCCEEE
Confidence 2244567778878876554
No 433
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.011 Score=61.21 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=59.9
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCC--Cccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------ccccccc-
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA- 168 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~~- 168 (284)
-+|||.+|+||||++.. .+.+|. .... ..+........-+.+. -.+.||+|...- ...|..|
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHH
Confidence 57999999999999765 344343 1111 1111101111112222 237799985332 1233333
Q ss_pred --------ccCCcEEEEEEeCCChh----hH-----HHHHHHHHHHHhHCCCCce-EEEEeCCCC
Q 023316 169 --------CKDAVAILFMFDLTSRC----TL-----NSIVGWYSEARKWNQTAIP-ILIGTKFDD 215 (284)
Q Consensus 169 --------~~~ad~iilv~d~~~~~----s~-----~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl 215 (284)
.+..++||+..|+.+-- .. ..++.=++++++.-.-..| .|++||.||
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 35789999999985421 11 1122335556555444455 699999998
No 434
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.0033 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.||+|+|.||+||||+..++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999776
No 435
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.25 E-value=0.14 Score=41.57 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=91.3
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
......|+++|..+.++..|...+...+-. ....... -.. +. +.. +... .=...|.|+
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~-------~~l~Vh~--a~s--LP----Lp~---e~~~----lRprIDlIV 69 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE-------FKLKVHL--AKS--LP----LPS---ENNN----LRPRIDLIV 69 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc-------eeEEEEE--ecc--CC----Ccc---cccC----CCceeEEEE
Confidence 344678999999999999999999863211 0110000 010 00 000 0011 114679999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|++|.++..|++.++.=+..+.....-+...++++-..- ++...+..++..+++..+.++++.+.-.+.++...+
T Consensus 70 Fvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-----~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l 144 (176)
T PF11111_consen 70 FVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-----ESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL 144 (176)
T ss_pred EEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-----ccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence 999999999999988766666444444566666665552 222333478899999999999999888877777666
Q ss_pred HHHHHHHH
Q 023316 257 FKFIMAKL 264 (284)
Q Consensus 257 f~~l~~~i 264 (284)
=+.+.+.+
T Consensus 145 AqRLL~~l 152 (176)
T PF11111_consen 145 AQRLLRML 152 (176)
T ss_pred HHHHHHHH
Confidence 66666554
No 436
>PRK07261 topology modulation protein; Provisional
Probab=96.21 E-value=0.004 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.||+|+|.+|+|||||...+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 437
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.14 E-value=0.0031 Score=50.88 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999765
No 438
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.14 E-value=0.031 Score=45.93 Aligned_cols=39 Identities=26% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhCC
Q 023316 229 TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 229 ~~~~~~a~~~~~~~~~--~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
..++.+|-+-.+-.|. |||.+.+-|.|+++-+-+.+-+.
T Consensus 162 aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 162 AIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred HHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhC
Confidence 4455555555555554 99999999999998877666443
No 439
>KOG2484 consensus GTPase [General function prediction only]
Probab=96.12 E-value=0.005 Score=56.04 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=39.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
...+++-|+|-|||||||+||+|...+.. ...++++.. -..+..+ .. +.|.|.+|.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s--mqeV~Ld-k~--i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS--MQEVKLD-KK--IRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh--hhheecc-CC--ceeccCCcee
Confidence 44689999999999999999999988876 444433322 2333333 23 5588988864
No 440
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.12 E-value=0.0044 Score=48.49 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
|+++|.+|+|||||+..+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999874
No 441
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.09 E-value=0.022 Score=43.80 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-+++.|++|+|||+|++.+...-
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.04 E-value=0.005 Score=52.84 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~ 124 (284)
|+++|++|||||||++-+.|-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999987744
No 443
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.91 E-value=0.16 Score=45.79 Aligned_cols=75 Identities=9% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcC
Q 023316 171 DAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSA 247 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~-~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa 247 (284)
.-|++|-|+|+.+-... .++......-... --+||.||.|| .+++ ..+..+...+.++ ++++.+|.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~----AD~ivlNK~Dl---v~~~----~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF----ADVIVLNKTDL---VDAE----ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh----CcEEEEecccC---CCHH----HHHHHHHHHHHhCCCCeEEEccc
Confidence 45788999998664332 2122222221111 22899999997 2222 1344455555554 67888777
Q ss_pred CCCcCHHHHH
Q 023316 248 THNINVNKIF 257 (284)
Q Consensus 248 ~~~~~v~~lf 257 (284)
. +....+++
T Consensus 185 ~-~~~~~~ll 193 (323)
T COG0523 185 G-DVDLAELL 193 (323)
T ss_pred c-CCCHHHhh
Confidence 3 33333333
No 444
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.91 E-value=0.072 Score=49.54 Aligned_cols=102 Identities=15% Similarity=0.272 Sum_probs=59.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccc---c--cc----------------eeeeeEEEEEC------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQ---M--AG----------------LNLINKTLMVQ------------ 144 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~---t--~~----------------~~~~~~~~~~~------------ 144 (284)
.-+|+++|+.|||||||+.-+++.--. .... + +| .+|..+-+.++
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 458999999999999999988765322 1000 0 00 11111111111
Q ss_pred --CeEEEEEEEeCCCCcCCc-ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC
Q 023316 145 --GARIAFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 202 (284)
Q Consensus 145 --~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~ 202 (284)
..--++.+-|.+|....+ .+....+...|++|+-=- |+.-..+++..+-+.|..++.
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP-TNNLDIESIDALaEAIney~G 752 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP-TNNLDIESIDALAEAINEYNG 752 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC-CCCcchhhHHHHHHHHHhccC
Confidence 112356788887766543 566777888888776543 333345666666667777654
No 445
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.88 E-value=0.007 Score=47.05 Aligned_cols=23 Identities=17% Similarity=0.341 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|..|+|||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 58899999999999999987754
No 446
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.80 E-value=0.011 Score=53.36 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=26.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEE
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARI 148 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 148 (284)
++++|++|||||||++.+.|-+- ++ ...+.++|..+
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~----~~------~G~I~i~g~~v 67 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE----PT------SGEILIDGRDV 67 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC----CC------CceEEECCEEC
Confidence 78999999999999999987543 22 23556666653
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.78 E-value=0.01 Score=39.87 Aligned_cols=19 Identities=16% Similarity=0.198 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 023316 103 ISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~ 121 (284)
.+|.|+.|+|||||+..+.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998875
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.77 E-value=0.0095 Score=40.87 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|.+.|.+|+||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999998754
No 449
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.019 Score=52.65 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=78.2
Q ss_pred EEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT 182 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~ 182 (284)
|.++|..|+|||||+.-+.|-.. |..| .+.++|+.+ |-...|+|+++....+.+-+.+==.+...
T Consensus 352 vFliG~NGsGKST~~~LLtGL~~----PqsG------~I~ldg~pV-----~~e~ledYR~LfSavFsDyhLF~~ll~~e 416 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTGLYQ----PQSG------EILLDGKPV-----SAEQLEDYRKLFSAVFSDYHLFDQLLGPE 416 (546)
T ss_pred EEEECCCCCcHHHHHHHHhcccC----CCCC------ceeECCccC-----CCCCHHHHHHHHHHHhhhHhhhHhhhCCc
Confidence 66999999999999998877533 2222 455666654 33344667777766665554443344444
Q ss_pred ChhhHHHHHHHHHHHHhHCC----------------------------CCceEEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316 183 SRCTLNSIVGWYSEARKWNQ----------------------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAY 234 (284)
Q Consensus 183 ~~~s~~~~~~~~~~l~~~~~----------------------------~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 234 (284)
..-+.+.+..|++.+.-... ...||+|.-.+- .+.++..++.-.....-.
T Consensus 417 ~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWA--ADQDPaFRR~FY~~lLp~ 494 (546)
T COG4615 417 GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWA--ADQDPAFRREFYQVLLPL 494 (546)
T ss_pred cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhh--ccCChHHHHHHHHHHhHH
Confidence 44567788899988753210 124566655443 012233444445666666
Q ss_pred HHHcCCcEEEEcCC
Q 023316 235 AKAMKATLFFSSAT 248 (284)
Q Consensus 235 a~~~~~~~~~~Sa~ 248 (284)
.++.|-++|.+|--
T Consensus 495 LK~qGKTI~aIsHD 508 (546)
T COG4615 495 LKEQGKTIFAISHD 508 (546)
T ss_pred HHHhCCeEEEEecC
Confidence 77778888877764
No 450
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.73 E-value=0.0098 Score=45.32 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE 126 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~ 126 (284)
-.++++|++|+|||+++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999999776443
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.68 E-value=0.0095 Score=45.64 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998754
No 452
>PRK06217 hypothetical protein; Validated
Probab=95.59 E-value=0.011 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.||+|+|.+|+|||||..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 453
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.54 E-value=0.01 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
|+++|++|+|||+|+..+..
T Consensus 2 vlL~G~~G~GKt~l~~~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999998864
No 454
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.49 E-value=0.011 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+++|++|+|||||++.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3889999999999999998653
No 455
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.49 E-value=0.059 Score=48.32 Aligned_cols=140 Identities=17% Similarity=0.194 Sum_probs=77.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc----CC----------CC----Cccc----ccceeeeeEEEE-------E------C
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG----NE----------QE----RSLQ----MAGLNLINKTLM-------V------Q 144 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~----~~----------~~----~~~~----t~~~~~~~~~~~-------~------~ 144 (284)
.+=|+++|-.|+||||-+-++.. +. |- .... ..|.++...... + .
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~Ak 218 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAAK 218 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHHH
Confidence 56789999999999998877632 11 11 0000 112222221100 0 0
Q ss_pred CeEEEEEEEeCCCCcCCcc-cc------ccccc-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEe
Q 023316 145 GARIAFSIWDVGGDSRSFD-HV------PIACK-----DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGT 211 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~-~~------~~~~~-----~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~n 211 (284)
...+.+.|.||+|.-.-.. +. ...++ ..+=++++.|.+-. ++++.++.+.+.. ..-=+|.|
T Consensus 219 ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav------~l~GiIlT 292 (340)
T COG0552 219 ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAV------GLDGIILT 292 (340)
T ss_pred HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhc------CCceEEEE
Confidence 1346688999999644211 10 01122 23448888898754 4555555443321 11148999
Q ss_pred CCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 212 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|.|- ... --.+...+...++|+.++-. |++++++
T Consensus 293 KlDg----tAK-----GG~il~I~~~l~~PI~fiGv--GE~~~DL 326 (340)
T COG0552 293 KLDG----TAK-----GGIILSIAYELGIPIKFIGV--GEGYDDL 326 (340)
T ss_pred eccc----CCC-----cceeeeHHHHhCCCEEEEeC--CCChhhc
Confidence 9992 111 11234567778999888754 7888887
No 456
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.45 E-value=0.023 Score=47.89 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
..-|+|+|.+|||||||++.+....
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhcC
Confidence 4568899999999999999997543
No 457
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.44 E-value=0.074 Score=43.07 Aligned_cols=91 Identities=8% Similarity=-0.025 Sum_probs=54.9
Q ss_pred EEEEEEEeCCCCcCCcccccccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCC-CCCCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDF-VRLPPD 222 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~-~~~~~~ 222 (284)
.+.+.+.|+++... ......+ ..+|.+|++...+ ..+...+..+++.+.+.. .+. -+|.|+.+-. ++...
T Consensus 67 ~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~- 140 (169)
T cd02037 67 ELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK- 140 (169)
T ss_pred CCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC-
Confidence 46688999998642 2222222 5789999998665 566777777777777653 233 4889998831 11011
Q ss_pred cccc-hHHHHHHHHHHcCCcEE
Q 023316 223 LQWT-IATQARAYAKAMKATLF 243 (284)
Q Consensus 223 ~~~~-~~~~~~~~a~~~~~~~~ 243 (284)
.... .....+++++.++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 1111 13456777887776654
No 458
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.016 Score=48.00 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
=|+|+|++|+|||||+++++...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38899999999999999998754
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.41 E-value=0.014 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999864
No 460
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.37 E-value=0.013 Score=50.98 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
++++|+.|||||||++.+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999976
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.36 E-value=0.013 Score=44.63 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998654
No 462
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.35 E-value=0.014 Score=48.29 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|+|+|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999664
No 463
>PRK03839 putative kinase; Provisional
Probab=95.32 E-value=0.014 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+|+|+|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988653
No 464
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.28 E-value=0.015 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|+|.+|+|||||++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 465
>PRK01889 GTPase RsgA; Reviewed
Probab=95.28 E-value=0.018 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-+++++|.+|+|||||++.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 379999999999999999998754
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.26 E-value=0.015 Score=47.46 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.|+|+|++|+|||||++.+.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48899999999999999998743
No 467
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.21 E-value=0.016 Score=45.82 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|.|+|..|+|||||+..+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999753
No 468
>PRK14530 adenylate kinase; Provisional
Probab=95.17 E-value=0.017 Score=48.87 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+|+|+|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998853
No 469
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.17 E-value=0.15 Score=40.32 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|..|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998764
No 470
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.14 E-value=0.018 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.609 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
.++++|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57899999999999999975
No 471
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.13 E-value=0.017 Score=48.04 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 388999999999999999865
No 472
>PRK13949 shikimate kinase; Provisional
Probab=95.11 E-value=0.019 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
+|+|+|.+|+|||||...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999988754
No 473
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.08 E-value=0.016 Score=47.18 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
--++|.|.+|+|||+|++++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998754
No 474
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.07 E-value=0.018 Score=44.25 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~ 124 (284)
++|.|.+|+|||++++++....
T Consensus 7 ~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998753
No 475
>PRK14532 adenylate kinase; Provisional
Probab=95.06 E-value=0.019 Score=47.32 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+++|.||+||||+..++..
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999864
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=95.05 E-value=0.18 Score=43.02 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHH--HHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcc
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~--~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~ 224 (284)
+.+.|.|+.|... ......+..+|.+|+=.-.+..+--+.+ .+|+.++.+.....+| -|+.|+.+- ...
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~------~~~ 155 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA------ARL 155 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc------chh
Confidence 5678999988764 2345566789999887765543332332 3666666655445566 599999871 111
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 225 WTIATQARAYAKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
........++.+ ++|++.+.-.+..-..++|.
T Consensus 156 ~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 156 TRAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 121222333333 48888888777766666665
No 477
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.04 E-value=0.021 Score=46.99 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
.++|+|+.|+|||||++.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 68999999999999999875
No 478
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=95.04 E-value=0.011 Score=53.99 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (284)
Q Consensus 96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 157 (284)
.+...+-|-+||-||+||||++|.|-..+....-|--|.+ +...+=--.-.+-+.|++|
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHHHHHHhceeEecCCC
No 479
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=95.03 E-value=0.028 Score=49.18 Aligned_cols=59 Identities=17% Similarity=0.334 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC--CC--C--cccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE--QE--R--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~--~~--~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
.=|.|+|...+|||.|+|++.+.. |. . ...|.|+-..... ...+..+.+.+.||.|...
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~-~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEP-LPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE--TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecc-cccccceeEEEecchhccc
Confidence 346699999999999999998743 33 1 1226676654443 2345668888999999866
No 480
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.02 E-value=0.021 Score=48.31 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998753
No 481
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=94.97 E-value=0.08 Score=43.30 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=25.6
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|++++|.|+.++.+..+ ..+.+.+.-...+.|.|+|.||+||
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhc
Confidence 78999999987643221 1223322111234566899999997
No 482
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.96 E-value=0.022 Score=48.09 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998753
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.94 E-value=0.021 Score=46.83 Aligned_cols=21 Identities=29% Similarity=0.245 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+++|.+|+||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999873
No 484
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=94.94 E-value=0.12 Score=47.49 Aligned_cols=161 Identities=13% Similarity=0.043 Sum_probs=85.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC----------C---------CCcccccceee------eeEEEEE-----CCeE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE----------Q---------ERSLQMAGLNL------INKTLMV-----QGAR 147 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~----------~---------~~~~~t~~~~~------~~~~~~~-----~~~~ 147 (284)
...++++++|.--+||||+=..++... + .+.|.+.-.|. ..+++.+ .-..
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 446899999999999999866653210 0 01111110000 0011111 1122
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHH--HHHHHhHCCCCceEEEEeCCCCCCCC-CC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGW--YSEARKWNQTAIPILIGTKFDDFVRL-PP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~--~~~l~~~~~~~~~Ilv~nK~Dl~~~~-~~ 221 (284)
-.+.+.|.+|+-.|..-.---..+||..++|.+....+ .|+.=-+- ...+.+-..-...|++.||.|..-.- +.
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 45789999999887643333346788888888763221 12211011 11122222233448999999952111 11
Q ss_pred CcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023316 222 DLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v~~lf~ 258 (284)
++-.+..+....+.+..| ..|+.+|..+|.++++.-.
T Consensus 237 eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 111122444555555443 4688999999999987543
No 485
>PF05729 NACHT: NACHT domain
Probab=94.93 E-value=0.021 Score=45.40 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
++|.|++|+|||+++..++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999998754
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.88 E-value=0.022 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|.|.|.+|+|||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999998664
No 487
>PRK02496 adk adenylate kinase; Provisional
Probab=94.86 E-value=0.026 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
+||+|+|.+|+||||+...+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998864
No 488
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.86 E-value=0.02 Score=48.25 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=16.9
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 023316 103 ISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~ 121 (284)
.+++|++|||||||++.|-
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4699999999999998883
No 489
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.86 E-value=0.025 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.85 E-value=0.022 Score=47.88 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..-|++.|.+|+|||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999999753
No 491
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.023 Score=48.52 Aligned_cols=20 Identities=20% Similarity=0.552 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
|+++|++|+|||||++.+.+
T Consensus 33 VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 33 VAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 88999999999999999876
No 492
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.84 E-value=0.023 Score=46.97 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 493
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.84 E-value=0.025 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.++|+.|+|||||++.+.+-.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998754
No 494
>COG1161 Predicted GTPases [General function prediction only]
Probab=94.84 E-value=0.038 Score=49.94 Aligned_cols=92 Identities=16% Similarity=0.103 Sum_probs=60.2
Q ss_pred CCC-cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH
Q 023316 156 GGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 234 (284)
Q Consensus 156 ~G~-e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 234 (284)
+|+ .++.......+...|+++-|.|+-++.+-. ...+.+.....+.++|+||+|| .+. .+..+-.+.+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~~k~~i~vlNK~DL---~~~---~~~~~W~~~~ 86 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVKEKPKLLVLNKADL---APK---EVTKKWKKYF 86 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHccCCcEEEEehhhc---CCH---HHHHHHHHHH
Confidence 443 345566667788999999999999887632 2334444444555999999997 222 2223334444
Q ss_pred HHHcCCcEEEEcCCCCcCHHHHHH
Q 023316 235 AKAMKATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 235 a~~~~~~~~~~Sa~~~~~v~~lf~ 258 (284)
.+..+...+.+|++.+.++..+-.
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 555567778888888887666653
No 495
>PF13173 AAA_14: AAA domain
Probab=94.83 E-value=0.022 Score=43.98 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~ 125 (284)
-++|.|..+||||||+.++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999999976543
No 496
>PRK08233 hypothetical protein; Provisional
Probab=94.82 E-value=0.024 Score=46.23 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.-|.+.|.+|+|||||.+++...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 55778899999999999999753
No 497
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.82 E-value=0.025 Score=48.45 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998754
No 498
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.81 E-value=0.023 Score=47.77 Aligned_cols=23 Identities=26% Similarity=0.260 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 499
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.81 E-value=0.026 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|..|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998864
No 500
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.026 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
Done!