Query 023316
Match_columns 284
No_of_seqs 230 out of 2012
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 04:46:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023316.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023316hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.8E-39 6.1E-44 275.3 18.2 168 97-269 10-179 (216)
2 2hup_A RAS-related protein RAB 100.0 5.4E-33 1.8E-37 232.3 18.1 164 98-266 27-193 (201)
3 2g3y_A GTP-binding protein GEM 100.0 5.5E-33 1.9E-37 234.6 18.1 166 98-268 35-205 (211)
4 2fu5_C RAS-related protein RAB 100.0 5.3E-33 1.8E-37 227.9 17.2 167 98-269 6-174 (183)
5 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-32 4.1E-37 227.2 19.2 161 98-267 18-181 (184)
6 2hxs_A RAB-26, RAS-related pro 100.0 1.1E-32 3.7E-37 224.7 18.0 168 98-270 4-177 (178)
7 3reg_A RHO-like small GTPase; 100.0 4.4E-32 1.5E-36 224.9 21.9 168 97-268 20-190 (194)
8 2a5j_A RAS-related protein RAB 100.0 2.8E-32 9.7E-37 225.7 20.6 165 98-267 19-185 (191)
9 2ew1_A RAS-related protein RAB 100.0 1.7E-32 5.7E-37 229.8 18.6 165 98-267 24-190 (201)
10 3tw8_B RAS-related protein RAB 100.0 5.3E-32 1.8E-36 220.7 20.4 167 98-269 7-174 (181)
11 2gf9_A RAS-related protein RAB 100.0 1.4E-31 4.7E-36 221.0 22.8 164 98-266 20-185 (189)
12 3q3j_B RHO-related GTP-binding 100.0 2.2E-32 7.7E-37 231.0 18.4 175 97-272 24-209 (214)
13 1z0f_A RAB14, member RAS oncog 100.0 6.4E-32 2.2E-36 219.9 20.2 164 98-266 13-178 (179)
14 3cbq_A GTP-binding protein REM 100.0 3E-32 1E-36 227.0 18.6 166 98-268 21-190 (195)
15 1z08_A RAS-related protein RAB 100.0 6E-32 2E-36 218.4 19.6 164 98-266 4-169 (170)
16 3c5c_A RAS-like protein 12; GD 100.0 5.2E-32 1.8E-36 223.7 19.2 162 98-266 19-186 (187)
17 2g6b_A RAS-related protein RAB 100.0 2.3E-31 7.9E-36 217.2 22.2 166 98-268 8-176 (180)
18 3t5g_A GTP-binding protein RHE 100.0 2.7E-31 9.2E-36 217.3 22.4 167 98-270 4-173 (181)
19 1x3s_A RAS-related protein RAB 100.0 1.3E-31 4.6E-36 221.3 20.5 171 97-273 12-185 (195)
20 1ek0_A Protein (GTP-binding pr 100.0 9.8E-32 3.3E-36 216.8 19.0 165 99-265 2-168 (170)
21 2efe_B Small GTP-binding prote 100.0 2.2E-31 7.6E-36 217.4 21.1 167 97-268 9-177 (181)
22 3tkl_A RAS-related protein RAB 100.0 2.1E-31 7.2E-36 220.5 21.1 166 98-268 14-181 (196)
23 2bcg_Y Protein YP2, GTP-bindin 100.0 2.8E-31 9.4E-36 222.1 21.9 166 98-268 6-173 (206)
24 2nzj_A GTP-binding protein REM 100.0 1.1E-31 3.7E-36 218.0 18.6 163 99-266 3-169 (175)
25 2il1_A RAB12; G-protein, GDP, 100.0 4.2E-32 1.4E-36 225.1 16.5 164 98-266 24-190 (192)
26 1g16_A RAS-related protein SEC 100.0 1.2E-31 4.1E-36 216.5 18.6 162 100-267 3-166 (170)
27 1r2q_A RAS-related protein RAB 100.0 1.7E-31 5.8E-36 215.4 19.5 163 98-265 4-168 (170)
28 3kkq_A RAS-related protein M-R 100.0 2.4E-31 8.2E-36 218.0 20.6 164 97-266 15-182 (183)
29 3q85_A GTP-binding protein REM 100.0 1.3E-31 4.3E-36 216.5 18.6 162 100-266 2-167 (169)
30 1z2a_A RAS-related protein RAB 100.0 1.3E-31 4.5E-36 215.8 18.5 163 99-266 4-167 (168)
31 2bme_A RAB4A, RAS-related prot 100.0 1.3E-31 4.4E-36 220.0 18.6 166 98-268 8-175 (186)
32 1z0j_A RAB-22, RAS-related pro 100.0 4.5E-31 1.5E-35 213.1 21.3 163 98-265 4-168 (170)
33 2iwr_A Centaurin gamma 1; ANK 100.0 1.2E-31 3.9E-36 218.9 17.9 162 98-268 5-171 (178)
34 3cpj_B GTP-binding protein YPT 100.0 2.8E-31 9.5E-36 225.3 20.8 170 98-272 11-182 (223)
35 2o52_A RAS-related protein RAB 100.0 8.9E-32 3E-36 224.7 17.0 166 98-268 23-190 (200)
36 2atx_A Small GTP binding prote 100.0 6.7E-31 2.3E-35 217.6 22.1 169 97-266 15-193 (194)
37 2oil_A CATX-8, RAS-related pro 100.0 3.4E-31 1.1E-35 219.3 20.1 164 98-266 23-188 (193)
38 3dz8_A RAS-related protein RAB 100.0 9.7E-33 3.3E-37 228.5 10.5 165 98-267 21-187 (191)
39 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.4E-31 1.8E-35 214.4 20.7 166 97-268 4-176 (177)
40 2fg5_A RAB-22B, RAS-related pr 100.0 2.3E-31 7.8E-36 220.5 18.2 167 98-269 21-189 (192)
41 2q3h_A RAS homolog gene family 100.0 3E-31 1E-35 220.9 18.9 171 97-268 17-197 (201)
42 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.7E-31 2E-35 215.7 20.1 173 98-271 3-185 (186)
43 3oes_A GTPase rhebl1; small GT 100.0 2E-31 6.8E-36 222.5 17.6 167 98-270 22-191 (201)
44 2cjw_A GTP-binding protein GEM 100.0 2.8E-31 9.4E-36 220.6 18.0 163 99-266 5-172 (192)
45 3q72_A GTP-binding protein RAD 100.0 3.5E-31 1.2E-35 213.3 17.9 161 100-266 2-164 (166)
46 1zbd_A Rabphilin-3A; G protein 100.0 8E-31 2.7E-35 218.7 20.4 164 99-267 7-172 (203)
47 2y8e_A RAB-protein 6, GH09086P 100.0 3.9E-31 1.3E-35 215.2 18.0 164 98-266 12-177 (179)
48 1gwn_A RHO-related GTP-binding 100.0 2.6E-31 8.8E-36 223.1 17.3 168 98-266 26-204 (205)
49 2fn4_A P23, RAS-related protei 100.0 8.1E-31 2.8E-35 213.7 19.3 164 98-267 7-173 (181)
50 2j0v_A RAC-like GTP-binding pr 100.0 5.9E-31 2E-35 221.1 18.9 170 98-272 7-186 (212)
51 1z06_A RAS-related protein RAB 100.0 5E-31 1.7E-35 217.7 18.1 162 99-265 19-187 (189)
52 2p5s_A RAS and EF-hand domain 100.0 3.4E-31 1.2E-35 220.7 16.8 169 98-266 26-197 (199)
53 1u8z_A RAS-related protein RAL 100.0 9E-31 3.1E-35 210.5 18.3 162 99-266 3-167 (168)
54 4dsu_A GTPase KRAS, isoform 2B 100.0 1.6E-30 5.6E-35 213.5 20.3 168 99-272 3-172 (189)
55 3bc1_A RAS-related protein RAB 100.0 8.6E-31 2.9E-35 215.8 18.3 166 97-267 8-186 (195)
56 1c1y_A RAS-related protein RAP 100.0 1.4E-30 4.9E-35 209.5 19.2 161 99-265 2-166 (167)
57 1vg8_A RAS-related protein RAB 100.0 6.1E-31 2.1E-35 219.7 17.5 166 98-269 6-178 (207)
58 1m7b_A RND3/RHOE small GTP-bin 100.0 9.3E-31 3.2E-35 215.3 18.2 168 98-266 5-183 (184)
59 2gco_A H9, RHO-related GTP-bin 100.0 3.3E-30 1.1E-34 215.1 21.6 168 98-266 23-200 (201)
60 2a9k_A RAS-related protein RAL 100.0 7.6E-31 2.6E-35 214.9 17.1 165 98-268 16-183 (187)
61 1ky3_A GTP-binding protein YPT 100.0 1.4E-30 4.7E-35 212.5 17.9 165 98-266 6-178 (182)
62 2bov_A RAla, RAS-related prote 100.0 1.8E-30 6.1E-35 216.5 18.9 164 98-267 12-178 (206)
63 2j1l_A RHO-related GTP-binding 100.0 1.3E-30 4.6E-35 219.8 18.3 171 98-269 32-212 (214)
64 3cph_A RAS-related protein SEC 100.0 2.6E-30 8.8E-35 216.9 19.7 163 99-267 19-183 (213)
65 2f7s_A C25KG, RAS-related prot 100.0 2E-31 6.9E-36 224.7 12.9 165 98-267 23-200 (217)
66 3con_A GTPase NRAS; structural 100.0 4.4E-30 1.5E-34 211.8 20.6 162 98-266 19-183 (190)
67 3l0i_B RAS-related protein RAB 100.0 1.9E-32 6.3E-37 228.4 6.3 164 98-266 31-196 (199)
68 3clv_A RAB5 protein, putative; 100.0 4.3E-30 1.5E-34 213.1 20.5 161 99-266 6-204 (208)
69 1kao_A RAP2A; GTP-binding prot 100.0 2.3E-30 7.9E-35 207.8 18.0 161 99-265 2-165 (167)
70 3gj0_A GTP-binding nuclear pro 100.0 3.8E-31 1.3E-35 223.9 13.7 169 96-271 11-180 (221)
71 3bwd_D RAC-like GTP-binding pr 100.0 4.4E-31 1.5E-35 215.9 13.5 163 99-266 7-181 (182)
72 4gzl_A RAS-related C3 botulinu 100.0 1.7E-30 5.7E-35 217.7 16.8 167 97-264 27-203 (204)
73 2fv8_A H6, RHO-related GTP-bin 100.0 8.7E-30 3E-34 213.6 20.6 171 98-269 23-203 (207)
74 2ce2_X GTPase HRAS; signaling 100.0 1.3E-29 4.6E-34 203.0 20.5 160 100-266 3-165 (166)
75 2yc2_C IFT27, small RAB-relate 100.0 8.1E-31 2.8E-35 218.8 13.1 166 98-267 18-193 (208)
76 3t1o_A Gliding protein MGLA; G 100.0 1.1E-30 3.9E-35 215.8 12.7 163 97-267 11-193 (198)
77 2erx_A GTP-binding protein DI- 100.0 9.4E-30 3.2E-34 205.5 16.6 162 100-267 3-168 (172)
78 2atv_A RERG, RAS-like estrogen 100.0 1.1E-29 3.8E-34 210.9 17.3 162 98-266 26-191 (196)
79 4djt_A GTP-binding nuclear pro 100.0 4.9E-30 1.7E-34 216.4 15.2 170 98-272 9-181 (218)
80 3llu_A RAS-related GTP-binding 100.0 6.1E-30 2.1E-34 212.7 14.1 161 98-264 18-195 (196)
81 2gf0_A GTP-binding protein DI- 100.0 2.3E-29 7.8E-34 208.7 17.1 165 99-270 7-175 (199)
82 2zej_A Dardarin, leucine-rich 100.0 4.1E-30 1.4E-34 211.7 9.8 167 100-270 2-182 (184)
83 1r8s_A ADP-ribosylation factor 100.0 1.7E-29 5.9E-34 203.0 12.5 159 101-266 1-162 (164)
84 1upt_A ARL1, ADP-ribosylation 100.0 5.1E-29 1.7E-33 201.4 15.2 161 100-267 7-170 (171)
85 4bas_A ADP-ribosylation factor 100.0 4.1E-29 1.4E-33 207.1 14.1 163 98-267 15-190 (199)
86 1zj6_A ADP-ribosylation factor 100.0 5.7E-29 2E-33 204.9 14.7 161 99-270 15-182 (187)
87 2h17_A ADP-ribosylation factor 100.0 2.5E-29 8.5E-34 206.2 12.1 154 99-263 20-180 (181)
88 1f6b_A SAR1; gtpases, N-termin 100.0 1.1E-28 3.7E-33 205.8 15.8 155 99-264 24-197 (198)
89 2h57_A ADP-ribosylation factor 100.0 1.9E-28 6.6E-33 202.2 16.9 157 99-266 20-187 (190)
90 1zd9_A ADP-ribosylation factor 100.0 2.7E-29 9.1E-34 207.4 10.9 161 99-266 21-185 (188)
91 1m2o_B GTP-binding protein SAR 100.0 3.1E-28 1.1E-32 201.6 17.2 154 99-263 22-189 (190)
92 2f9l_A RAB11B, member RAS onco 100.0 1.4E-27 4.7E-32 198.9 20.8 164 99-267 4-169 (199)
93 2b6h_A ADP-ribosylation factor 100.0 8.6E-29 2.9E-33 205.3 13.2 162 98-266 27-191 (192)
94 1oix_A RAS-related protein RAB 100.0 1.4E-27 4.9E-32 197.9 20.6 162 98-264 27-190 (191)
95 1fzq_A ADP-ribosylation factor 100.0 4E-29 1.4E-33 205.3 10.7 157 99-266 15-178 (181)
96 3r7w_B Gtpase2, GTP-binding pr 100.0 1.4E-29 4.8E-34 225.1 7.1 168 102-278 1-186 (331)
97 2wkq_A NPH1-1, RAS-related C3 100.0 1.1E-27 3.8E-32 214.1 19.1 167 100-267 155-331 (332)
98 2x77_A ADP-ribosylation factor 100.0 2.1E-28 7E-33 201.8 12.9 162 99-267 21-185 (189)
99 1ksh_A ARF-like protein 2; sma 100.0 1.3E-27 4.5E-32 196.3 17.5 158 99-267 17-181 (186)
100 3th5_A RAS-related C3 botulinu 99.9 2.9E-30 9.9E-35 215.7 0.0 166 98-264 28-203 (204)
101 3c5h_A Glucocorticoid receptor 100.0 2.2E-28 7.4E-33 212.2 11.1 161 98-265 17-254 (255)
102 1moz_A ARL1, ADP-ribosylation 99.9 5.1E-28 1.7E-32 197.9 10.9 157 99-266 17-180 (183)
103 2wji_A Ferrous iron transport 99.9 2.1E-27 7.1E-32 192.0 13.9 152 100-264 3-163 (165)
104 2fh5_B SR-beta, signal recogni 99.9 5.7E-27 2E-31 197.0 14.2 160 99-263 6-213 (214)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 4.6E-27 1.6E-31 209.2 13.7 165 100-272 3-187 (307)
106 3o47_A ADP-ribosylation factor 99.9 4.9E-27 1.7E-31 210.9 12.2 162 99-267 164-328 (329)
107 2lkc_A Translation initiation 99.9 1E-25 3.5E-30 183.2 16.8 158 99-269 7-174 (178)
108 3lvq_E ARF-GAP with SH3 domain 99.9 2.1E-26 7.3E-31 217.6 12.7 160 98-268 320-486 (497)
109 2wjg_A FEOB, ferrous iron tran 99.9 5.5E-26 1.9E-30 186.7 12.5 157 99-268 6-171 (188)
110 2gj8_A MNME, tRNA modification 99.9 1E-26 3.5E-31 189.6 7.0 152 100-266 4-166 (172)
111 2qu8_A Putative nucleolar GTP- 99.9 2.4E-25 8.3E-30 189.4 14.9 166 99-269 28-208 (228)
112 3dpu_A RAB family protein; roc 99.9 2.5E-26 8.6E-31 219.0 6.1 165 97-269 38-211 (535)
113 2dyk_A GTP-binding protein; GT 99.9 1E-24 3.5E-29 174.2 12.0 149 101-264 2-160 (161)
114 1svi_A GTP-binding protein YSX 99.9 9.3E-25 3.2E-29 180.4 10.7 155 99-265 22-194 (195)
115 3iev_A GTP-binding protein ERA 99.9 8.9E-24 3.1E-28 188.0 17.0 172 99-278 9-194 (308)
116 2cxx_A Probable GTP-binding pr 99.9 4.9E-25 1.7E-29 181.0 7.9 153 101-267 2-185 (190)
117 3pqc_A Probable GTP-binding pr 99.9 5E-24 1.7E-28 175.5 13.8 157 99-266 22-194 (195)
118 3a1s_A Iron(II) transport prot 99.9 4.5E-24 1.6E-28 185.3 14.2 154 99-265 4-166 (258)
119 2hjg_A GTP-binding protein ENG 99.9 5.5E-25 1.9E-29 204.8 7.4 249 4-266 72-349 (436)
120 1lnz_A SPO0B-associated GTP-bi 99.9 5.2E-24 1.8E-28 191.8 11.4 203 43-269 111-333 (342)
121 3iby_A Ferrous iron transport 99.9 3.9E-24 1.3E-28 185.5 9.2 150 101-263 2-164 (256)
122 3b1v_A Ferrous iron uptake tra 99.9 6.6E-24 2.2E-28 185.6 10.4 152 100-265 3-163 (272)
123 4dcu_A GTP-binding protein ENG 99.9 8.7E-24 3E-28 197.8 10.5 254 4-267 92-370 (456)
124 3i8s_A Ferrous iron transport 99.9 8.4E-24 2.9E-28 185.2 8.5 155 100-267 3-170 (274)
125 1wf3_A GTP-binding protein; GT 99.9 2.4E-22 8.1E-27 178.2 15.4 163 98-271 5-178 (301)
126 3k53_A Ferrous iron transport 99.9 1.3E-22 4.4E-27 177.2 13.4 157 100-268 3-168 (271)
127 3gee_A MNME, tRNA modification 99.9 3.1E-22 1.1E-26 187.5 15.6 152 100-265 233-397 (476)
128 1nrj_B SR-beta, signal recogni 99.9 1.5E-23 5.3E-28 176.4 4.8 146 98-252 10-170 (218)
129 4dhe_A Probable GTP-binding pr 99.9 7.7E-23 2.6E-27 172.6 9.0 162 99-268 28-213 (223)
130 1mky_A Probable GTP-binding pr 99.9 9.2E-22 3.1E-26 183.2 15.2 150 101-266 2-166 (439)
131 3qq5_A Small GTP-binding prote 99.9 1.2E-22 4.1E-27 187.5 8.0 157 98-267 32-197 (423)
132 1mky_A Probable GTP-binding pr 99.9 1.3E-21 4.5E-26 182.1 12.1 254 4-266 71-355 (439)
133 2e87_A Hypothetical protein PH 99.9 2.1E-20 7.1E-25 169.6 18.8 159 99-266 166-336 (357)
134 1xzp_A Probable tRNA modificat 99.9 2.4E-21 8.3E-26 181.6 12.7 151 100-265 243-404 (482)
135 3sjy_A Translation initiation 99.8 6.8E-20 2.3E-24 168.8 16.5 166 98-267 6-193 (403)
136 3geh_A MNME, tRNA modification 99.8 1.2E-20 4.1E-25 176.1 11.0 153 100-268 224-386 (462)
137 2xtz_A Guanine nucleotide-bind 99.8 1.7E-20 5.8E-25 169.4 11.4 122 146-267 181-346 (354)
138 1cip_A Protein (guanine nucleo 99.8 1E-20 3.6E-25 170.8 9.6 126 140-267 187-345 (353)
139 2xtp_A GTPase IMAP family memb 99.8 5.2E-20 1.8E-24 159.4 13.0 163 98-268 20-210 (260)
140 1ega_A Protein (GTP-binding pr 99.8 1.7E-19 5.8E-24 159.8 16.5 163 99-272 7-181 (301)
141 3ohm_A Guanine nucleotide-bind 99.8 4.5E-20 1.5E-24 164.6 12.2 127 140-268 161-320 (327)
142 2qtf_A Protein HFLX, GTP-bindi 99.8 1.2E-19 4E-24 164.8 14.6 161 100-267 178-355 (364)
143 1wb1_A Translation elongation 99.8 9E-20 3.1E-24 171.4 13.7 157 98-265 17-188 (482)
144 2hjg_A GTP-binding protein ENG 99.8 5.9E-21 2E-25 177.6 5.2 151 101-266 4-165 (436)
145 3lxx_A GTPase IMAP family memb 99.8 1.7E-19 5.7E-24 154.4 13.6 165 98-266 27-214 (239)
146 3t5d_A Septin-7; GTP-binding p 99.8 2.8E-20 9.6E-25 162.7 7.6 160 99-264 7-202 (274)
147 1udx_A The GTP-binding protein 99.8 4.3E-19 1.5E-23 163.3 15.4 208 43-269 110-328 (416)
148 1s0u_A EIF-2-gamma, translatio 99.8 7.7E-19 2.7E-23 161.9 17.1 161 99-267 7-199 (408)
149 2qag_A Septin-2, protein NEDD5 99.8 1.4E-20 4.7E-25 170.9 3.9 160 99-266 36-233 (361)
150 2ged_A SR-beta, signal recogni 99.8 6.6E-20 2.3E-24 151.0 7.6 108 99-215 47-168 (193)
151 3lxw_A GTPase IMAP family memb 99.8 5.6E-19 1.9E-23 152.2 13.4 163 99-266 20-208 (247)
152 3izy_P Translation initiation 99.8 1.4E-20 4.8E-25 178.0 1.8 159 100-267 4-169 (537)
153 3cb4_D GTP-binding protein LEP 99.8 1E-18 3.5E-23 167.6 14.5 158 100-267 4-183 (599)
154 3j2k_7 ERF3, eukaryotic polype 99.8 1.3E-18 4.3E-23 161.9 14.5 157 98-258 15-217 (439)
155 4fid_A G protein alpha subunit 99.8 4.6E-19 1.6E-23 158.6 10.8 121 146-266 159-328 (340)
156 1kk1_A EIF2gamma; initiation o 99.8 2.5E-18 8.7E-23 158.6 15.5 162 98-267 8-201 (410)
157 1jny_A EF-1-alpha, elongation 99.8 4.6E-20 1.6E-24 171.5 3.4 157 99-258 5-205 (435)
158 3p26_A Elongation factor 1 alp 99.8 3.9E-19 1.3E-23 167.3 9.5 156 99-255 32-227 (483)
159 2ywe_A GTP-binding protein LEP 99.8 5.9E-18 2E-22 162.1 16.9 158 100-267 6-185 (600)
160 2c78_A Elongation factor TU-A; 99.8 8.1E-19 2.8E-23 161.7 10.0 162 98-265 9-211 (405)
161 1pui_A ENGB, probable GTP-bind 99.8 9.9E-19 3.4E-23 145.9 9.3 159 100-269 26-202 (210)
162 1zun_B Sulfate adenylate trans 99.8 1.3E-18 4.5E-23 161.6 10.6 154 98-257 22-215 (434)
163 4dcu_A GTP-binding protein ENG 99.8 1.7E-19 5.9E-24 168.6 4.4 154 100-266 23-185 (456)
164 1d2e_A Elongation factor TU (E 99.8 1.4E-18 4.9E-23 159.6 10.3 161 100-266 3-195 (397)
165 1r5b_A Eukaryotic peptide chai 99.8 3.8E-19 1.3E-23 166.6 6.4 158 98-257 41-243 (467)
166 1g7s_A Translation initiation 99.8 4.6E-18 1.6E-22 163.1 13.7 161 99-265 4-217 (594)
167 3tr5_A RF-3, peptide chain rel 99.7 6.4E-18 2.2E-22 160.2 12.9 111 100-215 13-146 (528)
168 1u0l_A Probable GTPase ENGC; p 99.7 1.5E-18 5.1E-23 153.8 6.9 132 115-261 32-168 (301)
169 1zo1_I IF2, translation initia 99.7 2.9E-19 9.8E-24 167.8 2.3 159 99-263 3-164 (501)
170 3izq_1 HBS1P, elongation facto 99.7 1.8E-18 6E-23 166.8 7.2 156 98-256 165-362 (611)
171 2qnr_A Septin-2, protein NEDD5 99.7 1E-18 3.6E-23 154.8 4.4 162 98-267 16-215 (301)
172 2elf_A Protein translation elo 99.7 1.1E-17 3.7E-22 152.2 10.1 146 102-265 23-179 (370)
173 1azs_C GS-alpha; complex (lyas 99.7 1.5E-17 5.3E-22 151.9 10.9 134 131-268 204-387 (402)
174 1f60_A Elongation factor EEF1A 99.7 4.4E-18 1.5E-22 159.1 6.7 154 98-256 5-202 (458)
175 2aka_B Dynamin-1; fusion prote 99.7 1.8E-18 6.1E-23 152.4 3.6 158 99-263 25-250 (299)
176 3avx_A Elongation factor TS, e 99.7 1.8E-17 6.1E-22 166.5 10.2 164 97-266 293-486 (1289)
177 3def_A T7I23.11 protein; chlor 99.7 1.5E-16 5.3E-21 137.9 13.5 114 99-215 35-163 (262)
178 1wxq_A GTP-binding protein; st 99.7 1.1E-17 3.9E-22 153.3 5.6 84 101-184 1-114 (397)
179 1zcb_A G alpha I/13; GTP-bindi 99.7 6E-17 2E-21 146.7 9.2 134 131-268 188-355 (362)
180 3mca_A HBS1, elongation factor 99.7 8.1E-18 2.8E-22 161.7 3.4 152 98-254 175-371 (592)
181 2qag_C Septin-7; cell cycle, c 99.7 6.6E-17 2.3E-21 148.9 8.9 159 98-264 29-225 (418)
182 2dy1_A Elongation factor G; tr 99.7 4.2E-16 1.4E-20 151.7 13.9 113 100-215 9-138 (665)
183 1h65_A Chloroplast outer envel 99.7 6E-16 2.1E-20 134.7 12.3 114 99-215 38-166 (270)
184 2j69_A Bacterial dynamin-like 99.6 1.4E-16 4.7E-21 155.9 7.4 167 100-268 69-327 (695)
185 1jal_A YCHF protein; nucleotid 99.6 1.3E-14 4.4E-19 130.9 16.8 145 100-249 2-240 (363)
186 2h5e_A Peptide chain release f 99.6 3.7E-15 1.3E-19 141.4 13.8 115 99-216 12-147 (529)
187 3t34_A Dynamin-related protein 99.6 3.1E-16 1E-20 142.2 5.7 154 101-261 35-256 (360)
188 1dar_A EF-G, elongation factor 99.6 5.2E-15 1.8E-19 144.6 14.2 114 98-216 10-142 (691)
189 2hf9_A Probable hydrogenase ni 99.6 5.7E-18 1.9E-22 143.1 -8.1 151 100-265 38-223 (226)
190 1jwy_B Dynamin A GTPase domain 99.6 2.8E-15 9.4E-20 133.0 8.9 115 148-269 131-265 (315)
191 2rdo_7 EF-G, elongation factor 99.6 1.3E-14 4.6E-19 141.9 13.7 115 99-216 9-147 (704)
192 2xex_A Elongation factor G; GT 99.6 1.1E-14 3.9E-19 142.2 12.9 113 99-216 9-140 (693)
193 2wsm_A Hydrogenase expression/ 99.6 5.6E-15 1.9E-19 124.2 8.3 153 100-267 30-215 (221)
194 2x2e_A Dynamin-1; nitration, h 99.5 2.2E-16 7.7E-21 142.8 -1.3 155 100-262 31-254 (353)
195 2dby_A GTP-binding protein; GD 99.5 1.9E-14 6.7E-19 130.4 11.0 154 101-258 2-254 (368)
196 3p32_A Probable GTPase RV1496/ 99.5 1.7E-14 5.8E-19 130.5 6.6 103 148-266 172-284 (355)
197 1n0u_A EF-2, elongation factor 99.4 1.9E-13 6.5E-18 136.2 10.4 114 99-215 18-162 (842)
198 2yv5_A YJEQ protein; hydrolase 99.4 1.1E-12 3.9E-17 115.9 10.7 99 157-261 65-164 (302)
199 2qpt_A EH domain-containing pr 99.4 2.3E-13 7.9E-18 129.6 6.2 114 100-215 65-230 (550)
200 2www_A Methylmalonic aciduria 99.4 2.3E-13 8E-18 122.7 5.7 101 148-264 167-277 (349)
201 2p67_A LAO/AO transport system 99.3 6.3E-13 2.1E-17 119.5 4.9 104 148-265 149-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.3 3.3E-12 1.1E-16 110.0 7.9 112 148-265 109-256 (262)
203 4a9a_A Ribosome-interacting GT 99.3 3.2E-11 1.1E-15 109.3 13.3 155 100-258 72-240 (376)
204 3vqt_A RF-3, peptide chain rel 99.2 5.6E-11 1.9E-15 113.1 11.9 111 100-215 31-164 (548)
205 2ohf_A Protein OLA1, GTP-bindi 99.2 6.6E-12 2.3E-16 114.3 5.1 87 100-186 22-131 (396)
206 3zvr_A Dynamin-1; hydrolase, D 99.1 2.4E-11 8.2E-16 118.8 5.3 157 98-263 49-275 (772)
207 2qm8_A GTPase/ATPase; G protei 99.1 2.7E-10 9.3E-15 102.1 10.6 102 148-264 148-259 (337)
208 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1.2E-09 4E-14 99.6 13.5 84 100-183 20-127 (392)
209 3j25_A Tetracycline resistance 99.1 9.4E-11 3.2E-15 113.6 6.1 112 101-215 3-131 (638)
210 4fn5_A EF-G 1, elongation fact 99.0 3.8E-09 1.3E-13 103.6 14.7 113 100-215 13-149 (709)
211 3l82_B F-box only protein 4; T 99.0 9.9E-11 3.4E-15 96.9 2.5 106 155-267 109-224 (227)
212 3h2y_A GTPase family protein; 99.0 5.7E-10 2E-14 101.2 6.7 102 157-266 55-160 (368)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.8E-09 6E-14 98.0 5.4 103 156-266 56-162 (369)
214 3l2o_B F-box only protein 4; s 98.9 1.4E-09 4.9E-14 94.2 4.4 107 155-267 194-309 (312)
215 2qag_B Septin-6, protein NEDD5 98.5 5.8E-07 2E-11 82.5 9.6 142 100-248 42-218 (427)
216 2j37_W Signal recognition part 98.4 1.2E-07 4E-12 89.1 4.0 149 100-263 101-310 (504)
217 3ec1_A YQEH GTPase; atnos1, at 98.4 4.8E-08 1.7E-12 88.5 0.8 137 101-252 163-317 (369)
218 1tq4_A IIGP1, interferon-induc 98.3 1.9E-06 6.4E-11 79.0 10.0 165 101-270 70-257 (413)
219 3sop_A Neuronal-specific septi 98.3 1.2E-06 4.1E-11 75.9 7.9 138 100-244 2-178 (270)
220 3cnl_A YLQF, putative uncharac 98.3 2.7E-07 9.2E-12 79.6 3.5 57 101-160 100-156 (262)
221 3h2y_A GTPase family protein; 98.3 3.7E-08 1.3E-12 89.2 -2.5 133 101-247 161-311 (368)
222 1puj_A YLQF, conserved hypothe 98.2 1.1E-06 3.8E-11 76.5 5.6 98 154-265 5-105 (282)
223 1puj_A YLQF, conserved hypothe 98.2 1.2E-06 4E-11 76.4 5.0 57 99-160 119-177 (282)
224 1bif_A 6-phosphofructo-2-kinas 98.0 4.6E-08 1.6E-12 91.4 -7.4 101 100-201 39-149 (469)
225 3dm5_A SRP54, signal recogniti 97.9 1.8E-05 6.3E-10 72.9 7.4 141 100-256 100-281 (443)
226 1f5n_A Interferon-induced guan 97.8 2.2E-05 7.4E-10 75.0 5.6 64 98-161 36-104 (592)
227 2v3c_C SRP54, signal recogniti 97.8 2.9E-05 9.8E-10 71.6 6.1 84 148-246 181-272 (432)
228 1j8m_F SRP54, signal recogniti 97.7 3.4E-05 1.2E-09 67.6 5.0 92 148-256 181-281 (297)
229 1t9h_A YLOQ, probable GTPase E 97.7 2.9E-05 9.8E-10 68.3 4.3 94 160-258 75-169 (307)
230 3cnl_A YLQF, putative uncharac 97.6 3.4E-05 1.2E-09 66.3 3.5 90 156-262 5-97 (262)
231 3kl4_A SRP54, signal recogniti 97.5 5.1E-05 1.7E-09 69.8 4.2 91 148-254 180-278 (433)
232 2rcn_A Probable GTPase ENGC; Y 97.3 0.0012 4.1E-08 59.2 9.7 86 168-259 127-212 (358)
233 3e70_C DPA, signal recognition 97.2 0.0003 1E-08 62.5 5.2 91 150-256 214-310 (328)
234 3q5d_A Atlastin-1; G protein, 96.9 0.0011 3.6E-08 61.3 5.6 64 98-161 65-153 (447)
235 3szr_A Interferon-induced GTP- 96.7 0.0012 4.1E-08 63.4 5.1 23 102-124 47-69 (608)
236 4dzz_A Plasmid partitioning pr 96.5 0.00063 2.2E-08 55.3 1.4 84 148-243 76-162 (206)
237 1ye8_A Protein THEP1, hypothet 96.5 0.0014 4.8E-08 52.7 3.2 23 101-123 1-23 (178)
238 3cwq_A Para family chromosome 96.5 0.0023 8E-08 52.6 4.5 63 148-214 68-131 (209)
239 1kgd_A CASK, peripheral plasma 96.2 0.0026 9E-08 50.9 3.0 22 102-123 7-28 (180)
240 1lvg_A Guanylate kinase, GMP k 96.1 0.0031 1E-07 51.4 3.0 22 102-123 6-27 (198)
241 2xxa_A Signal recognition part 95.9 0.021 7.2E-07 52.4 8.3 62 148-215 184-252 (433)
242 4ido_A Atlastin-1; GTPase, GTP 95.9 0.011 3.9E-07 54.3 6.3 62 100-161 67-153 (457)
243 2yv5_A YJEQ protein; hydrolase 95.9 0.0062 2.1E-07 53.1 4.2 20 102-121 167-186 (302)
244 3a00_A Guanylate kinase, GMP k 95.8 0.0043 1.5E-07 49.9 2.9 21 103-123 4-24 (186)
245 3end_A Light-independent proto 95.8 0.079 2.7E-06 45.8 11.2 83 148-244 157-242 (307)
246 3tr0_A Guanylate kinase, GMP k 95.8 0.0044 1.5E-07 50.2 3.0 22 102-123 9-30 (205)
247 1zp6_A Hypothetical protein AT 95.8 0.0043 1.5E-07 49.7 2.9 22 102-123 11-32 (191)
248 1znw_A Guanylate kinase, GMP k 95.8 0.0045 1.5E-07 50.7 2.9 23 102-124 22-44 (207)
249 4gp7_A Metallophosphoesterase; 95.8 0.0044 1.5E-07 49.2 2.6 20 102-121 11-30 (171)
250 3ney_A 55 kDa erythrocyte memb 95.7 0.0053 1.8E-07 50.3 3.0 23 101-123 20-42 (197)
251 1s96_A Guanylate kinase, GMP k 95.7 0.0051 1.8E-07 51.1 3.0 23 102-124 18-40 (219)
252 1z6g_A Guanylate kinase; struc 95.7 0.0055 1.9E-07 50.7 2.9 23 102-124 25-47 (218)
253 1htw_A HI0065; nucleotide-bind 95.6 0.0064 2.2E-07 47.9 2.9 23 102-124 35-57 (158)
254 3c8u_A Fructokinase; YP_612366 95.6 0.0064 2.2E-07 49.8 3.1 24 100-123 22-45 (208)
255 2rcn_A Probable GTPase ENGC; Y 95.5 0.0069 2.3E-07 54.2 3.1 24 102-125 217-240 (358)
256 3tau_A Guanylate kinase, GMP k 95.5 0.0072 2.4E-07 49.5 3.0 23 102-124 10-32 (208)
257 1ex7_A Guanylate kinase; subst 95.5 0.0076 2.6E-07 48.8 3.0 21 103-123 4-24 (186)
258 3tif_A Uncharacterized ABC tra 95.4 0.0076 2.6E-07 50.6 2.9 23 102-124 33-55 (235)
259 1kag_A SKI, shikimate kinase I 95.3 0.0089 3.1E-07 47.0 3.0 22 102-123 6-27 (173)
260 2i3b_A HCR-ntpase, human cance 95.3 0.0084 2.9E-07 48.6 2.8 22 102-123 3-24 (189)
261 2pcj_A ABC transporter, lipopr 95.3 0.0084 2.9E-07 50.0 2.8 23 102-124 32-54 (224)
262 2bdt_A BH3686; alpha-beta prot 95.3 0.0093 3.2E-07 47.8 2.9 21 102-122 4-24 (189)
263 2j41_A Guanylate kinase; GMP, 95.3 0.0093 3.2E-07 48.3 2.9 24 101-124 7-30 (207)
264 2qor_A Guanylate kinase; phosp 95.3 0.0095 3.3E-07 48.5 3.0 23 101-123 13-35 (204)
265 2onk_A Molybdate/tungstate ABC 95.2 0.0099 3.4E-07 50.1 3.1 23 102-124 26-48 (240)
266 1b0u_A Histidine permease; ABC 95.2 0.01 3.4E-07 50.8 3.0 23 102-124 34-56 (262)
267 4eun_A Thermoresistant glucoki 95.2 0.01 3.5E-07 48.1 3.0 22 101-122 30-51 (200)
268 1sgw_A Putative ABC transporte 95.2 0.01 3.6E-07 49.1 3.0 22 102-123 37-58 (214)
269 2bbw_A Adenylate kinase 4, AK4 95.2 0.011 3.9E-07 49.5 3.3 21 101-121 28-48 (246)
270 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.6E-07 46.3 2.9 21 102-122 3-23 (173)
271 3ec2_A DNA replication protein 95.1 0.0091 3.1E-07 47.5 2.4 23 101-123 39-61 (180)
272 3lw7_A Adenylate kinase relate 95.1 0.011 3.8E-07 46.1 2.9 19 102-120 3-21 (179)
273 2cbz_A Multidrug resistance-as 95.1 0.012 4E-07 49.5 3.2 22 102-123 33-54 (237)
274 1ly1_A Polynucleotide kinase; 95.1 0.012 4E-07 46.5 3.0 22 101-122 3-24 (181)
275 1g6h_A High-affinity branched- 95.1 0.011 3.7E-07 50.4 2.9 23 102-124 35-57 (257)
276 1mv5_A LMRA, multidrug resista 95.1 0.012 4.2E-07 49.5 3.2 23 102-124 30-52 (243)
277 3gfo_A Cobalt import ATP-bindi 95.1 0.011 3.8E-07 50.9 3.0 23 102-124 36-58 (275)
278 2ff7_A Alpha-hemolysin translo 95.1 0.012 4.2E-07 49.7 3.2 23 102-124 37-59 (247)
279 1u0l_A Probable GTPase ENGC; p 95.1 0.01 3.6E-07 51.6 2.8 24 102-125 171-194 (301)
280 3fb4_A Adenylate kinase; psych 95.1 0.012 4.2E-07 48.1 3.1 22 101-122 1-22 (216)
281 3b85_A Phosphate starvation-in 95.0 0.01 3.5E-07 48.9 2.6 22 102-123 24-45 (208)
282 2pze_A Cystic fibrosis transme 95.0 0.013 4.5E-07 48.9 3.2 23 102-124 36-58 (229)
283 2olj_A Amino acid ABC transpor 95.0 0.012 4.1E-07 50.3 3.0 22 102-123 52-73 (263)
284 4g1u_C Hemin import ATP-bindin 95.0 0.012 4.1E-07 50.4 2.9 23 102-124 39-61 (266)
285 1ji0_A ABC transporter; ATP bi 95.0 0.012 4.2E-07 49.5 2.9 23 102-124 34-56 (240)
286 3dl0_A Adenylate kinase; phosp 95.0 0.013 4.5E-07 47.9 3.1 22 101-122 1-22 (216)
287 3asz_A Uridine kinase; cytidin 95.0 0.013 4.4E-07 47.7 3.0 23 101-123 7-29 (211)
288 2qi9_C Vitamin B12 import ATP- 95.0 0.013 4.4E-07 49.7 3.0 22 102-123 28-49 (249)
289 2jaq_A Deoxyguanosine kinase; 94.9 0.014 4.9E-07 46.9 3.1 21 102-122 2-22 (205)
290 1vpl_A ABC transporter, ATP-bi 94.9 0.013 4.5E-07 49.9 3.0 23 102-124 43-65 (256)
291 2d2e_A SUFC protein; ABC-ATPas 94.9 0.013 4.6E-07 49.5 3.0 22 102-123 31-52 (250)
292 4a74_A DNA repair and recombin 94.9 0.012 4.3E-07 48.2 2.8 22 102-123 27-48 (231)
293 1t9h_A YLOQ, probable GTPase E 94.9 0.0047 1.6E-07 54.1 0.1 23 102-124 175-197 (307)
294 1knq_A Gluconate kinase; ALFA/ 94.9 0.018 6.1E-07 45.4 3.6 22 101-122 9-30 (175)
295 2zu0_C Probable ATP-dependent 94.9 0.014 4.8E-07 50.0 3.1 22 102-123 48-69 (267)
296 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.3E-07 47.0 3.2 22 101-122 26-47 (199)
297 2if2_A Dephospho-COA kinase; a 94.9 0.014 4.9E-07 47.2 3.0 22 101-122 2-23 (204)
298 2ihy_A ABC transporter, ATP-bi 94.9 0.015 5.1E-07 50.2 3.2 23 102-124 49-71 (279)
299 2ghi_A Transport protein; mult 94.9 0.015 5.1E-07 49.6 3.2 22 102-123 48-69 (260)
300 2ixe_A Antigen peptide transpo 94.9 0.014 4.7E-07 50.2 2.9 23 102-124 47-69 (271)
301 3t61_A Gluconokinase; PSI-biol 94.9 0.014 4.9E-07 47.2 2.9 22 101-122 19-40 (202)
302 1np6_A Molybdopterin-guanine d 94.9 0.015 5.1E-07 46.5 3.0 22 102-123 8-29 (174)
303 2ehv_A Hypothetical protein PH 94.8 0.015 5.1E-07 48.4 3.1 20 102-121 32-51 (251)
304 2eyu_A Twitching motility prot 94.8 0.015 5E-07 49.7 3.0 22 102-123 27-48 (261)
305 3sr0_A Adenylate kinase; phosp 94.8 0.016 5.5E-07 47.6 3.1 22 101-122 1-22 (206)
306 2v9p_A Replication protein E1; 94.8 0.015 5.2E-07 50.8 3.1 21 102-122 128-148 (305)
307 3kjh_A CO dehydrogenase/acetyl 94.8 0.05 1.7E-06 45.1 6.2 64 147-214 131-194 (254)
308 2nq2_C Hypothetical ABC transp 94.8 0.015 5.1E-07 49.4 2.9 23 102-124 33-55 (253)
309 1nks_A Adenylate kinase; therm 94.8 0.018 6.1E-07 45.8 3.2 21 102-122 3-23 (194)
310 1qhx_A CPT, protein (chloramph 94.7 0.016 5.6E-07 45.6 2.9 21 102-122 5-25 (178)
311 2yz2_A Putative ABC transporte 94.7 0.015 5.3E-07 49.7 2.9 23 102-124 35-57 (266)
312 3lnc_A Guanylate kinase, GMP k 94.7 0.011 3.9E-07 49.0 2.0 22 102-123 29-51 (231)
313 3uie_A Adenylyl-sulfate kinase 94.7 0.016 5.6E-07 46.9 2.9 22 101-122 26-47 (200)
314 1cke_A CK, MSSA, protein (cyti 94.7 0.019 6.3E-07 47.3 3.2 22 101-122 6-27 (227)
315 2pjz_A Hypothetical protein ST 94.6 0.019 6.3E-07 49.1 3.2 23 102-124 32-54 (263)
316 1lw7_A Transcriptional regulat 94.6 0.015 5E-07 52.0 2.6 24 100-123 170-193 (365)
317 2cdn_A Adenylate kinase; phosp 94.6 0.022 7.4E-07 46.1 3.4 23 100-122 20-42 (201)
318 1jbk_A CLPB protein; beta barr 94.6 0.019 6.4E-07 45.2 3.0 22 102-123 45-66 (195)
319 2kjq_A DNAA-related protein; s 94.6 0.015 5.1E-07 45.2 2.3 22 102-123 38-59 (149)
320 1e4v_A Adenylate kinase; trans 94.6 0.018 6.3E-07 47.1 2.9 22 101-122 1-22 (214)
321 3aez_A Pantothenate kinase; tr 94.5 0.019 6.5E-07 50.3 3.0 23 100-122 90-112 (312)
322 1kht_A Adenylate kinase; phosp 94.5 0.022 7.5E-07 45.3 3.1 22 101-122 4-25 (192)
323 3cm0_A Adenylate kinase; ATP-b 94.5 0.024 8.3E-07 45.0 3.4 23 100-122 4-26 (186)
324 1jjv_A Dephospho-COA kinase; P 94.4 0.025 8.7E-07 45.8 3.4 22 101-122 3-24 (206)
325 3trf_A Shikimate kinase, SK; a 94.4 0.023 8E-07 45.1 3.1 22 101-122 6-27 (185)
326 2rhm_A Putative kinase; P-loop 94.4 0.02 6.9E-07 45.6 2.7 22 101-122 6-27 (193)
327 2f1r_A Molybdopterin-guanine d 94.4 0.011 3.7E-07 47.2 1.0 22 102-123 4-25 (171)
328 2bbs_A Cystic fibrosis transme 94.4 0.021 7.3E-07 49.5 3.0 22 102-123 66-87 (290)
329 1ixz_A ATP-dependent metallopr 94.3 0.022 7.6E-07 47.8 3.0 21 103-123 52-72 (254)
330 3fvq_A Fe(3+) IONS import ATP- 94.3 0.021 7.1E-07 51.1 2.9 23 102-124 32-54 (359)
331 2x8a_A Nuclear valosin-contain 94.3 0.022 7.5E-07 48.9 2.9 21 103-123 47-67 (274)
332 1z47_A CYSA, putative ABC-tran 94.2 0.023 8E-07 50.7 3.0 23 102-124 43-65 (355)
333 2plr_A DTMP kinase, probable t 94.2 0.029 1E-06 45.3 3.4 22 101-122 5-26 (213)
334 2pt5_A Shikimate kinase, SK; a 94.2 0.027 9.3E-07 43.9 3.1 22 101-122 1-22 (168)
335 1rj9_A FTSY, signal recognitio 94.2 0.024 8.2E-07 49.5 2.9 91 150-256 187-289 (304)
336 1via_A Shikimate kinase; struc 94.2 0.025 8.4E-07 44.7 2.8 21 102-122 6-26 (175)
337 1tev_A UMP-CMP kinase; ploop, 94.2 0.031 1.1E-06 44.5 3.4 23 100-122 3-25 (196)
338 2it1_A 362AA long hypothetical 94.2 0.025 8.6E-07 50.6 3.1 23 102-124 31-53 (362)
339 2yyz_A Sugar ABC transporter, 94.2 0.025 8.4E-07 50.6 3.0 23 102-124 31-53 (359)
340 1aky_A Adenylate kinase; ATP:A 94.2 0.028 9.4E-07 46.2 3.2 23 100-122 4-26 (220)
341 3nh6_A ATP-binding cassette SU 94.1 0.017 5.8E-07 50.5 1.9 22 102-123 82-103 (306)
342 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.026 8.8E-07 46.3 2.9 22 102-123 25-46 (235)
343 3rlf_A Maltose/maltodextrin im 94.1 0.026 9E-07 50.8 3.1 23 102-124 31-53 (381)
344 2wwf_A Thymidilate kinase, put 94.1 0.037 1.3E-06 44.8 3.7 23 100-122 10-32 (212)
345 1g29_1 MALK, maltose transport 94.1 0.027 9.2E-07 50.7 3.0 23 102-124 31-53 (372)
346 3tlx_A Adenylate kinase 2; str 94.0 0.033 1.1E-06 46.8 3.4 23 100-122 29-51 (243)
347 1v43_A Sugar-binding transport 94.0 0.028 9.6E-07 50.5 3.1 23 102-124 39-61 (372)
348 3tui_C Methionine import ATP-b 94.0 0.028 9.7E-07 50.3 3.1 22 103-124 57-78 (366)
349 2xb4_A Adenylate kinase; ATP-b 94.0 0.031 1E-06 46.2 3.1 22 101-122 1-22 (223)
350 3b9q_A Chloroplast SRP recepto 94.0 0.028 9.6E-07 49.0 3.0 89 150-255 186-287 (302)
351 2jeo_A Uridine-cytidine kinase 94.0 0.029 9.9E-07 47.0 2.9 22 101-122 26-47 (245)
352 1zd8_A GTP:AMP phosphotransfer 93.9 0.031 1.1E-06 46.2 3.0 22 101-122 8-29 (227)
353 2qt1_A Nicotinamide riboside k 93.9 0.035 1.2E-06 45.0 3.3 24 100-123 21-44 (207)
354 1y63_A LMAJ004144AAA protein; 93.9 0.035 1.2E-06 44.3 3.1 23 101-123 11-33 (184)
355 2yvu_A Probable adenylyl-sulfa 93.8 0.034 1.1E-06 44.3 3.0 23 100-122 13-35 (186)
356 1zcb_A G alpha I/13; GTP-bindi 93.8 0.034 1.2E-06 49.7 3.3 23 98-120 31-53 (362)
357 3jvv_A Twitching mobility prot 93.8 0.03 1E-06 50.0 2.9 22 102-123 125-146 (356)
358 3iij_A Coilin-interacting nucl 93.8 0.033 1.1E-06 44.1 2.9 22 101-122 12-33 (180)
359 1xjc_A MOBB protein homolog; s 93.8 0.035 1.2E-06 44.1 3.0 21 102-122 6-26 (169)
360 1iy2_A ATP-dependent metallopr 93.8 0.032 1.1E-06 47.6 3.0 21 103-123 76-96 (278)
361 2v54_A DTMP kinase, thymidylat 93.8 0.038 1.3E-06 44.4 3.3 23 101-123 5-27 (204)
362 1gvn_B Zeta; postsegregational 93.7 0.032 1.1E-06 48.2 2.9 22 101-122 34-55 (287)
363 2p65_A Hypothetical protein PF 93.7 0.025 8.7E-07 44.4 2.1 22 102-123 45-66 (187)
364 1in4_A RUVB, holliday junction 93.7 0.033 1.1E-06 49.1 2.9 22 102-123 53-74 (334)
365 2ze6_A Isopentenyl transferase 93.7 0.035 1.2E-06 47.0 3.0 21 102-122 3-23 (253)
366 2pbr_A DTMP kinase, thymidylat 93.7 0.038 1.3E-06 43.9 3.1 21 102-122 2-22 (195)
367 1zak_A Adenylate kinase; ATP:A 93.7 0.03 1E-06 46.0 2.5 22 101-122 6-27 (222)
368 3be4_A Adenylate kinase; malar 93.7 0.036 1.2E-06 45.5 3.0 22 101-122 6-27 (217)
369 1rz3_A Hypothetical protein rb 93.7 0.035 1.2E-06 45.0 2.8 23 100-122 22-44 (201)
370 1cr0_A DNA primase/helicase; R 93.7 0.032 1.1E-06 48.0 2.8 22 102-123 37-58 (296)
371 3d31_A Sulfate/molybdate ABC t 93.7 0.023 7.9E-07 50.6 1.8 23 102-124 28-50 (348)
372 3bos_A Putative DNA replicatio 93.6 0.037 1.3E-06 45.4 2.9 22 101-122 53-74 (242)
373 2cvh_A DNA repair and recombin 93.6 0.038 1.3E-06 45.0 2.9 21 102-122 22-42 (220)
374 2pt7_A CAG-ALFA; ATPase, prote 93.6 0.034 1.2E-06 49.1 2.8 23 102-124 173-195 (330)
375 2z0h_A DTMP kinase, thymidylat 93.5 0.043 1.5E-06 43.8 3.1 21 102-122 2-22 (197)
376 3gd7_A Fusion complex of cysti 93.5 0.036 1.2E-06 50.2 2.9 22 102-123 49-70 (390)
377 1n0w_A DNA repair protein RAD5 93.5 0.04 1.4E-06 45.6 3.0 22 102-123 26-47 (243)
378 1ukz_A Uridylate kinase; trans 93.5 0.059 2E-06 43.4 4.0 22 101-122 16-37 (203)
379 1sq5_A Pantothenate kinase; P- 93.5 0.036 1.2E-06 48.3 2.8 22 101-122 81-102 (308)
380 1gtv_A TMK, thymidylate kinase 93.5 0.016 5.5E-07 47.1 0.5 21 102-122 2-22 (214)
381 2vp4_A Deoxynucleoside kinase; 93.5 0.046 1.6E-06 45.3 3.3 24 100-123 20-43 (230)
382 2gza_A Type IV secretion syste 93.4 0.036 1.2E-06 49.5 2.8 22 102-123 177-198 (361)
383 2c95_A Adenylate kinase 1; tra 93.4 0.042 1.4E-06 43.8 2.9 22 101-122 10-31 (196)
384 2bwj_A Adenylate kinase 5; pho 93.4 0.043 1.5E-06 43.9 3.0 22 101-122 13-34 (199)
385 2ewv_A Twitching motility prot 93.4 0.038 1.3E-06 49.6 2.9 21 102-122 138-158 (372)
386 2w58_A DNAI, primosome compone 93.4 0.043 1.5E-06 44.2 2.9 23 101-123 55-77 (202)
387 1e6c_A Shikimate kinase; phosp 93.4 0.045 1.5E-06 42.8 3.0 21 102-122 4-24 (173)
388 1lv7_A FTSH; alpha/beta domain 93.3 0.043 1.5E-06 46.1 3.0 21 102-122 47-67 (257)
389 2obl_A ESCN; ATPase, hydrolase 93.3 0.043 1.5E-06 48.8 3.0 23 102-124 73-95 (347)
390 1ak2_A Adenylate kinase isoenz 93.3 0.048 1.6E-06 45.3 3.2 22 101-122 17-38 (233)
391 3a4m_A L-seryl-tRNA(SEC) kinas 93.3 0.044 1.5E-06 46.4 2.9 22 101-122 5-26 (260)
392 1uf9_A TT1252 protein; P-loop, 93.3 0.052 1.8E-06 43.5 3.3 24 100-123 8-31 (203)
393 3tqc_A Pantothenate kinase; bi 93.3 0.044 1.5E-06 48.2 3.0 23 100-122 92-114 (321)
394 3umf_A Adenylate kinase; rossm 93.3 0.048 1.6E-06 45.2 3.0 22 101-122 29-51 (217)
395 2pez_A Bifunctional 3'-phospho 93.3 0.049 1.7E-06 43.1 3.0 22 101-122 6-27 (179)
396 2og2_A Putative signal recogni 93.2 0.044 1.5E-06 49.0 3.0 90 150-256 243-345 (359)
397 1odf_A YGR205W, hypothetical 3 93.2 0.059 2E-06 46.6 3.7 23 100-122 31-53 (290)
398 1oxx_K GLCV, glucose, ABC tran 93.2 0.023 8E-07 50.7 1.1 23 102-124 33-55 (353)
399 1njg_A DNA polymerase III subu 93.2 0.048 1.6E-06 44.4 2.9 21 102-122 47-67 (250)
400 2chg_A Replication factor C sm 93.1 0.049 1.7E-06 43.8 2.9 20 103-122 41-60 (226)
401 2yhs_A FTSY, cell division pro 93.1 0.046 1.6E-06 50.9 3.0 92 148-256 376-480 (503)
402 1qf9_A UMP/CMP kinase, protein 93.1 0.055 1.9E-06 42.9 3.1 22 101-122 7-28 (194)
403 1nn5_A Similar to deoxythymidy 93.1 0.049 1.7E-06 44.1 2.9 23 100-122 9-31 (215)
404 4e22_A Cytidylate kinase; P-lo 93.1 0.056 1.9E-06 45.6 3.3 21 101-121 28-48 (252)
405 2p5t_B PEZT; postsegregational 93.1 0.054 1.9E-06 45.6 3.2 23 100-122 32-54 (253)
406 1uj2_A Uridine-cytidine kinase 93.1 0.057 1.9E-06 45.4 3.3 23 100-122 22-44 (252)
407 2vli_A Antibiotic resistance p 93.1 0.036 1.2E-06 43.7 2.0 22 101-122 6-27 (183)
408 3kta_A Chromosome segregation 93.1 0.05 1.7E-06 43.0 2.8 21 102-122 28-48 (182)
409 2iyv_A Shikimate kinase, SK; t 93.1 0.052 1.8E-06 43.0 2.9 21 102-122 4-24 (184)
410 1p9r_A General secretion pathw 93.0 0.049 1.7E-06 49.7 2.9 22 102-123 169-190 (418)
411 2npi_A Protein CLP1; CLP1-PCF1 92.9 0.045 1.5E-06 50.6 2.6 23 102-124 140-162 (460)
412 1nij_A Hypothetical protein YJ 92.9 0.045 1.5E-06 48.0 2.4 23 102-124 6-28 (318)
413 1m7g_A Adenylylsulfate kinase; 92.8 0.058 2E-06 44.0 2.9 22 101-122 26-47 (211)
414 3n70_A Transport activator; si 92.8 0.11 3.8E-06 39.6 4.3 22 102-123 26-47 (145)
415 4eaq_A DTMP kinase, thymidylat 92.8 0.06 2.1E-06 44.8 3.0 23 100-122 26-48 (229)
416 2oap_1 GSPE-2, type II secreti 92.7 0.056 1.9E-06 50.6 3.0 23 102-124 262-284 (511)
417 2dpy_A FLII, flagellum-specifi 92.6 0.061 2.1E-06 49.4 3.0 23 102-124 159-181 (438)
418 1nlf_A Regulatory protein REPA 92.6 0.059 2E-06 46.0 2.8 21 102-122 32-52 (279)
419 3h4m_A Proteasome-activating n 92.5 0.063 2.2E-06 45.7 2.9 22 102-123 53-74 (285)
420 3nwj_A ATSK2; P loop, shikimat 92.5 0.061 2.1E-06 45.5 2.7 21 102-122 50-70 (250)
421 2qz4_A Paraplegin; AAA+, SPG7, 92.5 0.068 2.3E-06 44.7 3.0 21 102-122 41-61 (262)
422 3b9p_A CG5977-PA, isoform A; A 92.4 0.065 2.2E-06 45.9 2.9 23 101-123 55-77 (297)
423 1vht_A Dephospho-COA kinase; s 92.4 0.083 2.8E-06 43.1 3.4 23 100-122 4-26 (218)
424 1yqt_A RNAse L inhibitor; ATP- 92.4 0.073 2.5E-06 50.2 3.3 23 102-124 49-71 (538)
425 2dr3_A UPF0273 protein PH0284; 92.2 0.074 2.5E-06 43.9 2.9 21 102-122 25-45 (247)
426 1zuh_A Shikimate kinase; alpha 92.2 0.089 3.1E-06 41.0 3.2 21 102-122 9-29 (168)
427 2qby_A CDC6 homolog 1, cell di 92.2 0.07 2.4E-06 47.1 2.8 22 102-123 47-68 (386)
428 1ltq_A Polynucleotide kinase; 92.1 0.081 2.8E-06 45.5 3.1 22 101-122 3-24 (301)
429 3euj_A Chromosome partition pr 92.1 0.076 2.6E-06 49.3 3.0 21 102-122 31-51 (483)
430 1l8q_A Chromosomal replication 92.0 0.078 2.7E-06 46.2 2.9 21 102-122 39-59 (324)
431 3b60_A Lipid A export ATP-bind 92.0 0.077 2.6E-06 50.5 3.0 22 102-123 371-392 (582)
432 3zvl_A Bifunctional polynucleo 91.9 0.24 8.3E-06 45.0 6.2 22 101-122 259-280 (416)
433 1svm_A Large T antigen; AAA+ f 91.9 0.082 2.8E-06 47.5 2.9 21 102-122 171-191 (377)
434 3ozx_A RNAse L inhibitor; ATP 91.9 0.08 2.7E-06 49.9 3.0 23 102-124 27-49 (538)
435 3t15_A Ribulose bisphosphate c 91.9 0.081 2.8E-06 45.7 2.8 22 101-122 37-58 (293)
436 3cf0_A Transitional endoplasmi 91.9 0.084 2.9E-06 45.7 2.9 22 102-123 51-72 (301)
437 3b5x_A Lipid A export ATP-bind 91.8 0.088 3E-06 50.1 3.2 23 102-124 371-393 (582)
438 1f2t_A RAD50 ABC-ATPase; DNA d 91.8 0.1 3.6E-06 40.2 3.1 19 103-121 26-44 (149)
439 2px0_A Flagellar biosynthesis 91.8 0.084 2.9E-06 45.8 2.8 90 148-253 183-278 (296)
440 3r20_A Cytidylate kinase; stru 91.7 0.1 3.5E-06 43.7 3.1 22 100-121 9-30 (233)
441 3syl_A Protein CBBX; photosynt 91.7 0.088 3E-06 45.3 2.8 22 101-122 68-89 (309)
442 2qmh_A HPR kinase/phosphorylas 91.7 0.11 3.7E-06 42.5 3.1 23 101-123 35-57 (205)
443 2qen_A Walker-type ATPase; unk 91.7 0.094 3.2E-06 45.6 3.0 22 102-123 33-54 (350)
444 2yl4_A ATP-binding cassette SU 91.6 0.08 2.7E-06 50.5 2.7 22 102-123 372-393 (595)
445 1tue_A Replication protein E1; 91.6 0.073 2.5E-06 43.7 2.1 21 102-122 60-80 (212)
446 1ofh_A ATP-dependent HSL prote 91.6 0.097 3.3E-06 44.8 3.0 21 102-122 52-72 (310)
447 1fnn_A CDC6P, cell division co 91.6 0.095 3.2E-06 46.4 3.0 22 102-123 46-67 (389)
448 1azs_C GS-alpha; complex (lyas 91.5 0.12 4E-06 46.9 3.5 24 97-120 37-60 (402)
449 3j16_B RLI1P; ribosome recycli 91.5 0.097 3.3E-06 50.1 3.1 23 102-124 105-127 (608)
450 2fna_A Conserved hypothetical 91.4 0.096 3.3E-06 45.6 2.8 22 102-123 32-53 (357)
451 3qf4_B Uncharacterized ABC tra 91.3 0.092 3.2E-06 50.1 2.8 22 102-123 383-404 (598)
452 1d2n_A N-ethylmaleimide-sensit 91.3 0.11 3.7E-06 44.1 2.9 24 100-123 64-87 (272)
453 2r8r_A Sensor protein; KDPD, P 91.3 0.13 4.6E-06 42.8 3.3 21 100-120 6-26 (228)
454 1vma_A Cell division protein F 91.2 0.11 3.8E-06 45.2 3.0 93 148-256 187-291 (306)
455 1sxj_E Activator 1 40 kDa subu 91.2 0.09 3.1E-06 46.2 2.4 20 103-122 39-58 (354)
456 1q3t_A Cytidylate kinase; nucl 91.2 0.13 4.3E-06 42.7 3.2 24 99-122 15-38 (236)
457 2f6r_A COA synthase, bifunctio 91.1 0.13 4.3E-06 44.2 3.2 22 100-121 75-96 (281)
458 3bk7_A ABC transporter ATP-bin 91.1 0.12 4E-06 49.5 3.2 23 102-124 119-141 (607)
459 3co5_A Putative two-component 91.1 0.068 2.3E-06 40.8 1.3 21 102-122 29-49 (143)
460 1yqt_A RNAse L inhibitor; ATP- 91.0 0.12 4.3E-06 48.6 3.3 23 102-124 314-336 (538)
461 4fcw_A Chaperone protein CLPB; 91.0 0.12 4E-06 44.5 2.9 22 102-123 49-70 (311)
462 1sxj_C Activator 1 40 kDa subu 91.0 0.11 3.9E-06 45.5 2.9 21 103-123 49-69 (340)
463 3ozx_A RNAse L inhibitor; ATP 90.9 0.12 4E-06 48.8 3.0 23 102-124 296-318 (538)
464 2grj_A Dephospho-COA kinase; T 90.9 0.17 5.7E-06 40.9 3.5 25 99-123 11-35 (192)
465 1xwi_A SKD1 protein; VPS4B, AA 90.8 0.12 4.1E-06 45.2 2.9 23 101-123 46-68 (322)
466 1pzn_A RAD51, DNA repair and r 90.8 0.12 4E-06 45.9 2.8 22 102-123 133-154 (349)
467 2v1u_A Cell division control p 90.8 0.11 3.7E-06 45.9 2.6 22 102-123 46-67 (387)
468 1sxj_D Activator 1 41 kDa subu 90.8 0.13 4.3E-06 45.1 2.9 21 103-123 61-81 (353)
469 4a82_A Cystic fibrosis transme 90.7 0.084 2.9E-06 50.2 1.8 22 102-123 369-390 (578)
470 3bk7_A ABC transporter ATP-bin 90.6 0.15 5E-06 48.9 3.3 23 102-124 384-406 (607)
471 3eie_A Vacuolar protein sortin 90.5 0.13 4.6E-06 44.8 2.9 22 101-122 52-73 (322)
472 3qf4_A ABC transporter, ATP-bi 90.5 0.1 3.5E-06 49.7 2.3 22 102-123 371-392 (587)
473 3qf7_A RAD50; ABC-ATPase, ATPa 90.5 0.14 4.9E-06 45.6 3.1 19 103-121 26-44 (365)
474 4b4t_K 26S protease regulatory 90.4 0.14 4.9E-06 46.8 3.0 21 102-122 208-228 (428)
475 2r62_A Cell division protease 90.4 0.07 2.4E-06 45.0 0.9 20 103-122 47-66 (268)
476 2qgz_A Helicase loader, putati 90.4 0.15 5E-06 44.4 2.9 22 101-122 153-174 (308)
477 3uk6_A RUVB-like 2; hexameric 90.3 0.14 4.7E-06 45.3 2.8 22 101-122 71-92 (368)
478 1p5z_B DCK, deoxycytidine kina 90.3 0.12 4E-06 43.7 2.2 23 100-122 24-46 (263)
479 3ake_A Cytidylate kinase; CMP 90.3 0.16 5.4E-06 40.8 2.9 21 102-122 4-24 (208)
480 4b4t_M 26S protease regulatory 90.2 0.15 5.1E-06 46.7 3.0 22 101-122 216-237 (434)
481 3pxg_A Negative regulator of g 90.2 0.16 5.4E-06 47.0 3.1 22 102-123 203-224 (468)
482 3crm_A TRNA delta(2)-isopenten 90.2 0.16 5.4E-06 44.7 3.0 22 101-122 6-27 (323)
483 2qby_B CDC6 homolog 3, cell di 90.1 0.15 5.1E-06 45.2 2.8 21 102-122 47-67 (384)
484 3pfi_A Holliday junction ATP-d 90.0 0.16 5.5E-06 44.3 2.9 22 102-123 57-78 (338)
485 2bjv_A PSP operon transcriptio 90.0 0.25 8.7E-06 41.5 4.1 23 102-124 31-53 (265)
486 4b4t_L 26S protease subunit RP 89.9 0.17 5.7E-06 46.4 3.0 22 101-122 216-237 (437)
487 3j16_B RLI1P; ribosome recycli 89.9 0.17 5.7E-06 48.5 3.1 23 103-125 381-403 (608)
488 3gmt_A Adenylate kinase; ssgci 89.9 0.19 6.7E-06 41.8 3.1 24 99-122 7-30 (230)
489 2ga8_A Hypothetical 39.9 kDa p 89.8 0.21 7.1E-06 44.5 3.4 22 101-122 25-46 (359)
490 3tqf_A HPR(Ser) kinase; transf 89.7 0.21 7.2E-06 39.8 3.1 23 101-123 17-39 (181)
491 2qp9_X Vacuolar protein sortin 89.7 0.17 5.9E-06 44.8 2.9 22 102-123 86-107 (355)
492 2z4s_A Chromosomal replication 89.7 0.17 5.7E-06 46.4 2.9 21 102-122 132-152 (440)
493 3a8t_A Adenylate isopentenyltr 89.7 0.2 6.8E-06 44.3 3.2 22 102-123 42-63 (339)
494 1um8_A ATP-dependent CLP prote 89.6 0.18 6.3E-06 44.8 3.0 21 102-122 74-94 (376)
495 3m6a_A ATP-dependent protease 89.5 0.17 5.9E-06 47.7 2.9 21 102-122 110-130 (543)
496 3lda_A DNA repair protein RAD5 89.5 0.18 6E-06 45.7 2.8 20 102-121 180-199 (400)
497 3d8b_A Fidgetin-like protein 1 89.5 0.19 6.4E-06 44.6 2.9 22 101-122 118-139 (357)
498 1sky_E F1-ATPase, F1-ATP synth 89.5 0.16 5.6E-06 46.9 2.6 22 102-123 153-174 (473)
499 2zts_A Putative uncharacterize 89.4 0.21 7.1E-06 41.2 3.1 20 102-121 32-51 (251)
500 3exa_A TRNA delta(2)-isopenten 89.4 0.21 7.1E-06 43.8 3.1 22 102-123 5-26 (322)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.8e-39 Score=275.33 Aligned_cols=168 Identities=22% Similarity=0.415 Sum_probs=139.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
+...+||+|||++|||||||+++|+.+.|. .+.+|+|.++..+.+.+++..+.++||||+|+++|..+++.|+++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 345799999999999999999999999998 5567999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
++|||+++++||+++..|+..+.......+| ||||||+|| . ..+.+..++++++|++++++|+||||++|.||+
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl----~-~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL----A-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC----G-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccch----H-hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHH
Confidence 9999999999999999999999887655555 799999996 2 223345889999999999999999999999999
Q ss_pred HHHHHHHHHHhCCcc
Q 023316 255 KIFKFIMAKLFNLPW 269 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~ 269 (284)
++|+.|++.+.+...
T Consensus 165 e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 165 QLFRRVAAALPGMES 179 (216)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999999876543
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=5.4e-33 Score=232.35 Aligned_cols=164 Identities=26% Similarity=0.397 Sum_probs=138.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|.++.+. ...+|++.++..+.+.+++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999987 55568899998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~~~v~ 254 (284)
+|||++++++|+++..|+..+.......+| |||+||+||. +. +.+..++++++++.+++ +++++||++|.||+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 181 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS----EL-REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc----cc-cccCHHHHHHHHHHcCCCEEEEEeCCCCCCHH
Confidence 999999999999999999999888644445 7999999962 21 22346788899999999 99999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++++.+..
T Consensus 182 ~l~~~l~~~i~~ 193 (201)
T 2hup_A 182 EAFLRVATELIM 193 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 3
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.5e-33 Score=234.61 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=138.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCC--CCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVA 174 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~ 174 (284)
...+||+|+|++|||||||+++|++... ...++++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4479999999999999999999997544 45667889898888899999999999999999987 56677888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 252 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~ 252 (284)
+|+|||+++++||+.+..|+..+.+.. ...|.||||||+||. +. +.+..++++.++..++++|++|||++|.|
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~----~~-r~v~~~e~~~~a~~~~~~~~e~SAk~g~~ 189 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV----RC-REVSVSEGRACAVVFDCKFIETSAAVQHN 189 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh----cC-ceEeHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 999999999999999999998887642 244558999999962 11 22346678888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023316 253 VNKIFKFIMAKLFNLP 268 (284)
Q Consensus 253 v~~lf~~l~~~i~~~~ 268 (284)
|+++|+++++.+....
T Consensus 190 v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 190 VKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999885443
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=5.3e-33 Score=227.89 Aligned_cols=167 Identities=20% Similarity=0.362 Sum_probs=119.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35799999999999999999999998887 55668899998888899999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++|+++..|+..+..+....+| ++|+||+|+. +. +.+..++++.+++.++++++++||++|.|+++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN----DK-RQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC----SC-CCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC----cc-CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999887554445 7999999962 21 22346778899999999999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023316 256 IFKFIMAKLFNLPW 269 (284)
Q Consensus 256 lf~~l~~~i~~~~~ 269 (284)
+|.++.+.+.....
T Consensus 161 l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 161 AFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998876543
No 5
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-32 Score=227.22 Aligned_cols=161 Identities=20% Similarity=0.334 Sum_probs=136.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+||+|+|++|||||||+++|+++.+...+.+++.++ .+.+.+++..+.+++|||+|+++|. +++++|++++
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~ 91 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF 91 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence 457999999999999999999999999885444444444 4788899999999999999999877 8899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVN 254 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~Sa~~~~~v~ 254 (284)
|||++++++|+++..|+..+..... ..|.+|||||+||. ......+..+++.++++.++ ++|+++||++|.||+
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS---AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE 168 (184)
T ss_dssp EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCB---TTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---cccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence 9999999999999999999988743 44557999999962 12223344788999999997 899999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023316 255 KIFKFIMAKLFNL 267 (284)
Q Consensus 255 ~lf~~l~~~i~~~ 267 (284)
++|+++++.+.+.
T Consensus 169 ~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 169 RVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 6
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=1.1e-32 Score=224.69 Aligned_cols=168 Identities=22% Similarity=0.357 Sum_probs=146.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECC-eEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+||+++|++|||||||+++|.++.+. ...+|++.++..+.+.+++ ..+.+++|||+|++++..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 35799999999999999999999999887 4556888999888888876 678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC---CCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 251 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~---~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~ 251 (284)
|+|||++++++|+++..|+..+..+. ...|+ ++|+||+|+. +. .....+++..+++.++++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE----HM-RTIKPEKHLRFCQENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG----GG-CSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc----cc-cccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 99999999999999999999987753 24564 7999999962 11 2233677889999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCccc
Q 023316 252 NVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~~~~~ 270 (284)
|++++|+++.+.+.+.++.
T Consensus 159 gi~~l~~~l~~~~~~~~~~ 177 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIKLN 177 (178)
T ss_dssp THHHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHhhhhc
Confidence 9999999999999877653
No 7
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.4e-32 Score=224.91 Aligned_cols=168 Identities=19% Similarity=0.341 Sum_probs=145.4
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+. ...+|++.++. ..+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 456899999999999999999999999988 44557776655 4677899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~Sa~~~~~v 253 (284)
|+|||++++++|+++ ..|+..+.......|.|+|+||+|+. .+....+..+++.++++.+++. ++++||++|.||
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR---KDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGC---CTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc---cCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 999999999999997 78999998887666668999999973 2222334478899999999998 999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023316 254 NKIFKFIMAKLFNLP 268 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~ 268 (284)
+++|+++++.+...+
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 176 NEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999997664
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.8e-32 Score=225.68 Aligned_cols=165 Identities=21% Similarity=0.365 Sum_probs=142.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++++. ...++++.++..+.+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45899999999999999999999999987 45568898888888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++++..|+..+.......+| ++|+||+|+. + ...+..++++.+++.++++++++||++|.|+++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE----S-RRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC----C-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999887654555 7999999962 1 122346778899999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|+++++.+.+.
T Consensus 174 l~~~l~~~i~~~ 185 (191)
T 2a5j_A 174 AFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 9
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-32 Score=229.77 Aligned_cols=165 Identities=22% Similarity=0.387 Sum_probs=146.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...+|++.++..+.+.+++..+.+++|||+|+++|..++..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 35799999999999999999999999988 56678999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++|+.+..|+..+.......+| |+|+||+|+. + .+.+..++++.+++..+++++++||++|.||++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA----E-RREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----G-GCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999888655555 7999999962 1 122346778889999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|+++++.+...
T Consensus 179 l~~~l~~~i~~~ 190 (201)
T 2ew1_A 179 LFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 10
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.3e-32 Score=220.72 Aligned_cols=167 Identities=23% Similarity=0.409 Sum_probs=147.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999888 66678899999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
+|||++++.+++.+..|+..+.......|.|+|+||+|+. + ......+++..++...+++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP----E-RKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc----h-hcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999999999998887766668999999962 2 1223467788999999999999999999999999
Q ss_pred HHHHHHHHhCCcc
Q 023316 257 FKFIMAKLFNLPW 269 (284)
Q Consensus 257 f~~l~~~i~~~~~ 269 (284)
|+++.+.+.....
T Consensus 162 ~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 162 FNCITELVLRAKK 174 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876543
No 11
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=1.4e-31 Score=221.03 Aligned_cols=164 Identities=24% Similarity=0.457 Sum_probs=144.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 35799999999999999999999999987 55668888888888888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++.+..|+..+........| ++|+||+|+. +. +....++++++++.++++++++||++|.|+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE----DE-RVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc----cc-cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999888644444 7999999962 11 22336778899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++++.+.+
T Consensus 175 l~~~l~~~i~~ 185 (189)
T 2gf9_A 175 VFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 12
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.2e-32 Score=230.95 Aligned_cols=175 Identities=24% Similarity=0.302 Sum_probs=142.1
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+|+|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 102 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 102 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence 3457999999999999999999999999884 456777766 46677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHH-HHHHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 176 LFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 176 ilv~d~~~~~s~~~-~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
|+|||++++++|++ +..|+..+....+..|.||||||+||..... ...+.+..+++..+++.+++ +|+++|
T Consensus 103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 182 (214)
T 3q3j_B 103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS 182 (214)
T ss_dssp EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence 99999999999999 6899999999876666689999999631100 00123447889999999999 999999
Q ss_pred CCCCcC-HHHHHHHHHHHHhCCccccc
Q 023316 247 ATHNIN-VNKIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 247 a~~~~~-v~~lf~~l~~~i~~~~~~~~ 272 (284)
|++|.| |+++|+++++.+.......+
T Consensus 183 A~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 183 AFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp TTTCHHHHHHHHHHHHHHHHC------
T ss_pred cCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 999998 99999999999987765444
No 13
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=6.4e-32 Score=219.86 Aligned_cols=164 Identities=23% Similarity=0.383 Sum_probs=144.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|.++.+. ...++++.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999987 44568888888888899999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+++++..|+..+........| ++|+||+|+. ++ .....++++++++.++++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE----AQ-RDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999887654455 7999999962 11 22346788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++++.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 14
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=226.96 Aligned_cols=166 Identities=16% Similarity=0.179 Sum_probs=141.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-cccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~i 175 (284)
...+||+|+|++|||||||+++|++..+. ...++++.++..+.+.+++..+.+.+|||+|++.+.. ++..+++.+|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 34799999999999999999999876554 4556778888888888999999999999999998775 788899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
|+|||++++++|+++..|+.++..... ..|.|+||||+||. .. +.+..++++.+++.++++++++||++|.||
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA----RS-REVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc----cc-CCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999999999988753 44558999999962 21 223467788999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023316 254 NKIFKFIMAKLFNLP 268 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~ 268 (284)
+++|+++++.+....
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987543
No 15
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=6e-32 Score=218.44 Aligned_cols=164 Identities=26% Similarity=0.506 Sum_probs=137.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35799999999999999999999999887 56678899988888888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++.+..|+..+.......+| ++|+||+|+. ++ +.+..++++.+++..+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE----KE-RHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999998876544444 7999999962 11 22336778899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++.+.+.+
T Consensus 159 l~~~l~~~~~~ 169 (170)
T 1z08_A 159 LFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 16
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=5.2e-32 Score=223.73 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=135.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+++|||+|++++..+ ..+++.+|++|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 347999999999999999999999999884 445777665 456778999999999999999999886 67999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC-CCCc
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNI 251 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa-~~~~ 251 (284)
+|||++++++|+++..|+..+..+. ...|.|||+||+|+. . .+.+..+++.++++.++++++++|| ++|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA----Q-YRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG----G-GCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh----h-cCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 9999999999999999999998763 455568999999962 1 1223467889999999999999999 8999
Q ss_pred CHHHHHHHHHHHHhC
Q 023316 252 NVNKIFKFIMAKLFN 266 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~ 266 (284)
||+++|+++++.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999988753
No 17
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.3e-31 Score=217.16 Aligned_cols=166 Identities=25% Similarity=0.472 Sum_probs=137.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+||+++|++|||||||+++|+++.+. ...+|++.++....+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 45799999999999999999999999986 4556889998888888999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|+|||++++.+++++..|+..+........| ++|+||+|+. .+ .....++++.+++.++++++++||++|.|++
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 162 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA----HE-RVVKREDGEKLAKEYGLPFMETSAKTGLNVD 162 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT----SC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 9999999999999999999999887654445 7999999972 21 2234677888999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|+++.+.+.+..
T Consensus 163 ~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 163 LAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
No 18
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.7e-31 Score=217.30 Aligned_cols=167 Identities=19% Similarity=0.179 Sum_probs=143.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+++|||+|++++..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 357999999999999999999999988874 445777666 677888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++|+.+..|+.++.+... ..|.++|+||+|+. + .+.+..++++.+++.++++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH----M-ERVISYEEGKALAESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT----T-TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----h-cceecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence 99999999999999999999977643 44558999999962 2 23344788999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccc
Q 023316 255 KIFKFIMAKLFNLPWT 270 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~ 270 (284)
++|+++++.+......
T Consensus 158 ~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 158 DVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999877543
No 19
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-31 Score=221.30 Aligned_cols=171 Identities=22% Similarity=0.397 Sum_probs=149.2
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+|+|++|||||||+++|++..+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345799999999999999999999999988 5566889999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
|+|||++++.+++++..|+..+..+.. ..|+++|+||+|+. ......+++..+++.++++++++||+++.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE------NREVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS------SCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc------ccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 999999999999999999999977642 34447999999962 1223367788899999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccc
Q 023316 254 NKIFKFIMAKLFNLPWTVKR 273 (284)
Q Consensus 254 ~~lf~~l~~~i~~~~~~~~~ 273 (284)
+++|+++.+.+.+.++..+.
T Consensus 166 ~~l~~~l~~~~~~~~~~~~~ 185 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPGLWES 185 (195)
T ss_dssp HHHHHHHHHHHHTSGGGTCC
T ss_pred HHHHHHHHHHHHhhhhhhcc
Confidence 99999999999887654443
No 20
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-32 Score=216.76 Aligned_cols=165 Identities=25% Similarity=0.402 Sum_probs=144.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4689999999999999999999999987 556788988888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++.+++++..|+..+.......+| ++|+||+|+... ...+.+..+++..+++..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE--GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS--SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc--ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999887654555 799999997321 111233467788899999999999999999999999
Q ss_pred HHHHHHHHh
Q 023316 257 FKFIMAKLF 265 (284)
Q Consensus 257 f~~l~~~i~ 265 (284)
|+++.+.+.
T Consensus 160 ~~~l~~~i~ 168 (170)
T 1ek0_A 160 FLGIGEKIP 168 (170)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHHHh
Confidence 999987764
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2.2e-31 Score=217.44 Aligned_cols=167 Identities=27% Similarity=0.430 Sum_probs=144.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 345799999999999999999999999988 4556889999888899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|+|||++++.+|+.+..|+..+.......+| ++|+||+|+. +. .....++++.+++..+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL----DA-RKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----cc-ccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 9999999999999999999999888654455 7999999962 21 2234677889999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|+++.+.+...+
T Consensus 164 ~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 164 EIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999998886554
No 22
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=2.1e-31 Score=220.50 Aligned_cols=166 Identities=21% Similarity=0.408 Sum_probs=148.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45799999999999999999999999988 56678899999899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+|+.+..|+..+........| |+|+||+|+. .. .....++++.+++.++++++++||++|.|+++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----TK-KVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999999888665555 7999999962 22 22336778899999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|+++.+.+.+..
T Consensus 169 l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 169 SFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887553
No 23
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=2.8e-31 Score=222.14 Aligned_cols=166 Identities=20% Similarity=0.377 Sum_probs=147.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|.++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999999999988 56678999998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+|+.+..|+..+.......+| ++|+||+|+. +. .....+++..+++..+++++++||++|.|+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK----DK-RVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----TT-CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999887655455 7999999962 21 22346778889999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|.++.+.+.+..
T Consensus 161 l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 161 AFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999886543
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=217.96 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=132.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--CcccccccccCCcEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 176 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--~~~~~~~~~~~ad~ii 176 (284)
..+||+++|++|||||||+++|.+..+...+++.|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 36899999999999999999999998876667888888888889999999999999999998 6677888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++|+.+..|+..+.... ...|.|+|+||+|+. +. +.+..++++.++..++++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA----RC-REVSVEEGRACAVVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT----TT-CCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc----cc-cccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 9999999999999999999988753 244558999999962 22 2233667888899999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++.+.+..
T Consensus 158 ~l~~~l~~~~~~ 169 (175)
T 2nzj_A 158 ELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 25
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-32 Score=225.09 Aligned_cols=164 Identities=23% Similarity=0.428 Sum_probs=138.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999999999887 55678899998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++.+++++..|++.+........| ++|+||+|+. .. +....++++.+++.+ +++++++||++|.|++
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE----TD-REITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 999999999999999999999888665555 7999999962 11 223366788888885 8899999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++.+.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 26
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=1.2e-31 Score=216.47 Aligned_cols=162 Identities=26% Similarity=0.449 Sum_probs=138.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|+++++. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|+|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 689999999999999999999999987 5567889888888888899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
||++++.+++++..|+..+........| ++|+||+|+. ......+++..+++.++++++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT------TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC------cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 9999999999999999999888654455 7999999961 12234677888999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 023316 258 KFIMAKLFNL 267 (284)
Q Consensus 258 ~~l~~~i~~~ 267 (284)
+++.+.+.+.
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988643
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.7e-31 Score=215.35 Aligned_cols=163 Identities=26% Similarity=0.434 Sum_probs=143.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45799999999999999999999999887 45568888888888889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++++..|+..+........| ++|+||+|+. ++ .....+++..+++..+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA----NK-RAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc----cc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999887554555 7999999962 11 22336778889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
+|+++.+.+.
T Consensus 159 l~~~i~~~~~ 168 (170)
T 1r2q_A 159 IFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHTSC
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 28
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=2.4e-31 Score=217.97 Aligned_cols=164 Identities=15% Similarity=0.201 Sum_probs=141.7
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+|+|++|||||||+++|+++.+. ...++++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 445899999999999999999999999888 4445777666 67788899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhH-C-CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC-CCcC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT-HNIN 252 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~-~-~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~-~~~~ 252 (284)
|+|||++++++|+.+..|+..+... . ...|.|+|+||+|+. + .+.+..++++.+++.++++++++||+ +|.|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM----H-LRKVTRDQGKEMATKYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS----T-TCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch----h-ccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence 9999999999999999999998764 3 334458999999962 2 12344778899999999999999999 9999
Q ss_pred HHHHHHHHHHHHhC
Q 023316 253 VNKIFKFIMAKLFN 266 (284)
Q Consensus 253 v~~lf~~l~~~i~~ 266 (284)
++++|+++.+.+.+
T Consensus 169 v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 29
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=1.3e-31 Score=216.54 Aligned_cols=162 Identities=16% Similarity=0.203 Sum_probs=128.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc-cccccccCCcEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 177 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~iil 177 (284)
.+||+++|++|||||||+++|.+..+. ...++.+.+.....+.+++..+.+.+|||+|++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 489999999999999999999988776 4455667888888889999999999999999999876 78888999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||++++++|+.+..|+.++..... +.|.++|+||+|+. + ...+..+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA----R-SREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh----h-cccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999988765 44558999999962 1 233447888999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++++.+..
T Consensus 157 l~~~l~~~i~~ 167 (169)
T 3q85_A 157 LFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 30
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=1.3e-31 Score=215.79 Aligned_cols=163 Identities=20% Similarity=0.393 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999999999887 556688999988999999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|||++++++++++..|+..+.......|.++|+||+|+. +. .....++++.+++.++++++++||++|.|++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL----DD-SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG----GG-CSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998876556668999999962 11 2233677888999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
+++.+.+.+
T Consensus 159 ~~l~~~~~~ 167 (168)
T 1z2a_A 159 KYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998864
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=1.3e-31 Score=220.00 Aligned_cols=166 Identities=25% Similarity=0.364 Sum_probs=146.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999999999988 56678898998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++++..|+..+.......+| ++|+||+|+. .. .....+++..+++..+++++++||++|.|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD----AD-REVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 999999999999999999999887654555 7999999962 11 22336778889999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|+++++.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (186)
T 2bme_A 163 AFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887643
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=4.5e-31 Score=213.09 Aligned_cols=163 Identities=27% Similarity=0.444 Sum_probs=144.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999987 55668898888888889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+++++..|++.+.......+| ++|+||+|+. +. +....+++..+++..+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT----DV-REVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 999999999999999999999988555555 6999999962 11 22346778889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
+|+++.+.+.
T Consensus 159 l~~~i~~~i~ 168 (170)
T 1z0j_A 159 LFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 33
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=1.2e-31 Score=218.93 Aligned_cols=162 Identities=19% Similarity=0.294 Sum_probs=133.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+||+++|++|||||||+++|+++.+....+|++.. +.+.+.+++..+.+++|||+|+++ ..|++++|++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 35799999999999999999999999988755677744 467788899999999999999987 468899999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNIN 252 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~ 252 (284)
|||++++++|+++..|++.+.... ...|.++||||+|+. ....+.+..+++..+++.. +++++++||++|.|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB---TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 999999999999999876665542 233447999999962 1122234477788888876 68999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023316 253 VNKIFKFIMAKLFNLP 268 (284)
Q Consensus 253 v~~lf~~l~~~i~~~~ 268 (284)
++++|+++++.+.+..
T Consensus 156 i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 34
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.8e-31 Score=225.32 Aligned_cols=170 Identities=24% Similarity=0.388 Sum_probs=140.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|.++.+. ...+|++.++....+.+++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988 55678899998888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+|+++..|+..+.......+| |||+||+|+. .. ..+..+++..+++..+++++++||++|.||++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA----HL-RAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999887654455 7999999962 11 22336778889999999999999999999999
Q ss_pred HHHHHHHHHhCCccccc
Q 023316 256 IFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 256 lf~~l~~~i~~~~~~~~ 272 (284)
+|+++++.+.+.....+
T Consensus 166 l~~~l~~~i~~~~~~~~ 182 (223)
T 3cpj_B 166 AFEELINTIYQKVSKHQ 182 (223)
T ss_dssp HHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 99999999987655444
No 35
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.98 E-value=8.9e-32 Score=224.66 Aligned_cols=166 Identities=25% Similarity=0.376 Sum_probs=137.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45799999999999999999999999887 55678898998889999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++++..|+..+.......+| ++|+||+|+. .. .....+++..+++..+++++++||++|.|+++
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 177 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD----PE-REVTFLEASRFAQENELMFLETSALTGENVEE 177 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999887654455 7999999962 11 22336778889999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023316 256 IFKFIMAKLFNLP 268 (284)
Q Consensus 256 lf~~l~~~i~~~~ 268 (284)
+|+++++.+.+..
T Consensus 178 l~~~l~~~i~~~~ 190 (200)
T 2o52_A 178 AFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 36
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=6.7e-31 Score=217.63 Aligned_cols=169 Identities=17% Similarity=0.264 Sum_probs=142.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+.. ..+|++.++ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 3467999999999999999999999998874 445666554 56677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~-~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
|+|||++++++|+++. .|+..+..+.+..|.++|+||+|+..... . ..+.+..+++..+++.+++ +++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999997 89999998876666689999999732100 0 0112347788999999998 999999
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023316 247 ATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~ 266 (284)
|++|.|++++|+++++.++.
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=3.4e-31 Score=219.25 Aligned_cols=164 Identities=26% Similarity=0.403 Sum_probs=144.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++..+.+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45799999999999999999999999988 55568899998888889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+++.+..|+..+........| ++|+||+||. .. .....++++.+++..+++++++||++|.|+++
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 177 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS----QA-REVPTEEARMFAENNGLLFLETSALDSTNVEL 177 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999877544455 7999999962 11 22346778889999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++.+.+.+
T Consensus 178 l~~~l~~~i~~ 188 (193)
T 2oil_A 178 AFETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 38
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=9.7e-33 Score=228.49 Aligned_cols=165 Identities=22% Similarity=0.424 Sum_probs=146.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999999999987 55568888888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++|+.+..|+..+.......+| |+|+||+|+. + ......++++.+++.++++++++||++|.|+++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME----E-ERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999988755555 7999999962 2 123347788999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|+++++.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988643
No 39
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.98 E-value=5.4e-31 Score=214.38 Aligned_cols=166 Identities=22% Similarity=0.374 Sum_probs=141.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 345799999999999999999999999887 5567889999888999999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH 249 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~ 249 (284)
++|||++++.+++++..|+..+.... ...|.++|+||+|+. ......+++..+++ ..+++++++||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999998764 334557999999962 12234677888888 5678999999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023316 250 NINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~~ 268 (284)
|.|++++|+++++.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLATE 176 (177)
T ss_dssp CTTHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhhc
Confidence 9999999999999987653
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=2.3e-31 Score=220.52 Aligned_cols=167 Identities=25% Similarity=0.421 Sum_probs=144.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 35799999999999999999999999987 55678898888888888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++++.+..|+..+.......+| ++|+||+|+. + .+.+..++++++++.++++++++||++|.|+++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS----D-IREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG----G-GCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 999999999999999999999888654555 7999999962 1 122346788999999999999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023316 256 IFKFIMAKLFNLPW 269 (284)
Q Consensus 256 lf~~l~~~i~~~~~ 269 (284)
+|+++.+.+.+.++
T Consensus 176 l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 176 LFQGISRQIPPLDP 189 (192)
T ss_dssp HHHHHHHTCC----
T ss_pred HHHHHHHHHHhhCC
Confidence 99999998865543
No 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=220.92 Aligned_cols=171 Identities=23% Similarity=0.292 Sum_probs=137.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34579999999999999999999999988744 45666444 56778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
|+|||++++++|+++. .|+..+..+....|+|+|+||+|+..... .....+..+++..+++.+++ +++++|
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 175 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999999997 79999998877666689999999732100 00122346788899999887 999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCc
Q 023316 247 ATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~~ 268 (284)
|++|.|++++|+++++.+.+.+
T Consensus 176 a~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 176 ALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999886543
No 42
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=5.7e-31 Score=215.72 Aligned_cols=173 Identities=23% Similarity=0.332 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|++++..++..+++.+|++|
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 3579999999999999999999999988744 44665444 566788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++.+|+++. .|+..+....+..|.++|+||+|+...... ....+..+++..+++.+++ +++++||
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecC
Confidence 999999999999997 799999888776666899999996211000 0012336778889999997 9999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcccc
Q 023316 248 THNINVNKIFKFIMAKLFNLPWTV 271 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~~~ 271 (284)
++|.|++++|+++.+.+.+.++..
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~k 185 (186)
T 1mh1_A 162 LTQRGLKTVFDEAIRAVLCPPPVK 185 (186)
T ss_dssp TTCTTHHHHHHHHHHHHSCCCC--
T ss_pred CCccCHHHHHHHHHHHHhcccccC
Confidence 999999999999999998876543
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.98 E-value=2e-31 Score=222.46 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=137.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+.. ..+|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 457999999999999999999999999884 445777666 566677788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++|+.+..|+..+..... ..|.|+|+||+|+. + ...+..+++..+++.++++++++||++|.|++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 175 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS----P-EREVQAVEGKKLAESWGATFMESSARENQLTQ 175 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHHTCEEEECCTTCHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc----c-ccccCHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 99999999999999999999987632 34558999999962 2 12334678899999999999999999999999
Q ss_pred HHHHHHHHHHhCCccc
Q 023316 255 KIFKFIMAKLFNLPWT 270 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~ 270 (284)
++|+++.+.+.+....
T Consensus 176 ~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 176 GIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999998766543
No 44
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=2.8e-31 Score=220.58 Aligned_cols=163 Identities=19% Similarity=0.259 Sum_probs=134.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC--CCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC-CcccccccccCCcEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 175 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-~~~~~~~~~~~ad~i 175 (284)
..+||+++|++|||||||+++|++.. +...++++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 36999999999999999999999744 345567788898888899999999999999999987 667888899999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
++|||+++++||+.+..|+..+.... ...|.|+|+||+||. . .+.+..+++..++..++++|++|||++|.||
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~-~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV----R-XREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh----c-cccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 99999999999999999998887753 234557999999962 1 1223366778888999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 023316 254 NKIFKFIMAKLFN 266 (284)
Q Consensus 254 ~~lf~~l~~~i~~ 266 (284)
+++|+++++.+..
T Consensus 160 ~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 160 KELFEGIVRQVRL 172 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998853
No 45
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=3.5e-31 Score=213.30 Aligned_cols=161 Identities=18% Similarity=0.243 Sum_probs=117.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||+++|.+..+....++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5899999999999999999999877664445556555 467788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
|++++++|+.+..|+..+.... .+.|.++|+||+|+. +. .....+++..+++..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV----RS-REVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC----SS-CCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc----cc-cccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999999988753 344558999999962 22 2334777889999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
+++.+.+..
T Consensus 156 ~~l~~~~~~ 164 (166)
T 3q72_A 156 EGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988753
No 46
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=8e-31 Score=218.67 Aligned_cols=164 Identities=24% Similarity=0.452 Sum_probs=145.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+|+|++|||||||+++|++..+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 4799999999999999999999999987 556688989888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++++|+.+..|+..+........| ++|+||+|+. +. +....++++.+++.++++++++||++|.|++++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME----DE-RVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT----TS-CCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC----cc-cccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999887654445 7999999962 21 223467788999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|+++.+.+.+.
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=3.9e-31 Score=215.17 Aligned_cols=164 Identities=21% Similarity=0.425 Sum_probs=143.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45799999999999999999999999888 55668898998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++.+++.+..|+..+.......+| ++|+||+|+. +. .....+++..+++..+++++++||++|.|+++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 166 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS----DK-RQVSTEEGERKAKELNVMFIETSAKAGYNVKQ 166 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc----cc-CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999877554455 7999999962 11 22336778888999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++.+.+.+
T Consensus 167 l~~~l~~~~~~ 177 (179)
T 2y8e_A 167 LFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHTCC-
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 48
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-31 Score=223.14 Aligned_cols=168 Identities=25% Similarity=0.325 Sum_probs=140.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+. ...+|++.++ .+.+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 45799999999999999999999999988 4455777665 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcC-CcEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMK-ATLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa 247 (284)
+|||++++++|+++ ..|+..+.+.....|.|+|+||+|+..+.. .. ...+..+++..+++.++ ++|+++||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 99999999999999 799999988876666689999999731100 00 12234677899999988 69999999
Q ss_pred C-CCcCHHHHHHHHHHHHhC
Q 023316 248 T-HNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 248 ~-~~~~v~~lf~~l~~~i~~ 266 (284)
+ ++.||+++|+.+++.+++
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 9 689999999999998764
No 49
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=8.1e-31 Score=213.68 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=140.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+.. ..+|++.++. ..+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 447999999999999999999999998884 4457776665 77788998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhH-CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKW-NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~-~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++++.+..|+..+.+. .. ..|.++|+||+|+. + ......+++..++...+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 160 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE----S-QRQVPRSEASAFGASHHVAYFEASAKLRLNVD 160 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG----G-GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHcCCeEEEecCCCCCCHH
Confidence 999999999999999999998543 33 44558999999962 1 12233677888999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023316 255 KIFKFIMAKLFNL 267 (284)
Q Consensus 255 ~lf~~l~~~i~~~ 267 (284)
++|+++.+.+.+.
T Consensus 161 ~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 161 EAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988643
No 50
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=5.9e-31 Score=221.08 Aligned_cols=170 Identities=22% Similarity=0.368 Sum_probs=140.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...+|++.++ ...+.+++..+.+++|||+|+++|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 35799999999999999999999999987 4445777554 466778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-------cchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-------WTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-------~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++++|+++. .|+..+..+.+..|+|||+||+||. +... .+..+++..+++.+++ +++++||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR----DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh----hCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999997 8999999887666668999999962 2111 1246778889999996 9999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCccccc
Q 023316 248 THNINVNKIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~~~~ 272 (284)
++|.|++++|+++++.+.+.....+
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC-----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999999987765444
No 51
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=5e-31 Score=217.67 Aligned_cols=162 Identities=25% Similarity=0.430 Sum_probs=140.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc-ccccccccCCcEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL 176 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~-~~~~~~~~~ad~ii 176 (284)
..+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++. .++..+++.+|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 4799999999999999999999999988 556688999988899999999999999999999998 88999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC---c
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN---I 251 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~---~ 251 (284)
+|||++++.+|+.+..|+.++.+.. ...|.|+|+||+|+. .. ..+..++++.+++.++++++++||+++ .
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR----SA-IQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-ceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 9999999999999999999998874 344558999999962 11 223467788999999999999999999 9
Q ss_pred CHHHHHHHHHHHHh
Q 023316 252 NVNKIFKFIMAKLF 265 (284)
Q Consensus 252 ~v~~lf~~l~~~i~ 265 (284)
|++++|+++++.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.4e-31 Score=220.72 Aligned_cols=169 Identities=22% Similarity=0.306 Sum_probs=136.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++.+.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 34799999999999999999999999987 55568898888888999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCC-ceEEEEeCCCCCCCCC-CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++.+++++..|++.+....... |.|+|+||+||..... +..+.+..++++.+++..+++++++||++|.||+
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 9999999999999999999998876544 4479999999621100 0112234677889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++++.+.+
T Consensus 186 el~~~l~~~i~~ 197 (199)
T 2p5s_A 186 EAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998854
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=9e-31 Score=210.45 Aligned_cols=162 Identities=16% Similarity=0.234 Sum_probs=136.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4689999999999999999999999887444 4555554 4566788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||++++++++.+..|+..+..... ..|.++|+||+|+. +. .....+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc----cc-CccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999999988754 44558999999962 21 22346788889999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 54
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.6e-30 Score=213.53 Aligned_cols=168 Identities=14% Similarity=0.204 Sum_probs=141.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.++.+...++++..+.....+.+++..+.+++|||+|++.+..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 47999999999999999999999999885555444556667778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++++|+.+..|+..+..... ..|.++|+||+|+. ......+++..+++.++++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999988643 34558999999962 1233467888999999999999999999999999
Q ss_pred HHHHHHHHhCCccccc
Q 023316 257 FKFIMAKLFNLPWTVK 272 (284)
Q Consensus 257 f~~l~~~i~~~~~~~~ 272 (284)
|+++.+.+........
T Consensus 157 ~~~l~~~~~~~~~~~~ 172 (189)
T 4dsu_A 157 FYTLVREIRKHKEKMS 172 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999876554443
No 55
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=8.6e-31 Score=215.83 Aligned_cols=166 Identities=22% Similarity=0.354 Sum_probs=143.8
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccceeee-eEEEEECCe---------EEEEEEEeCCCCcCCcccc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHV 165 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~-~~~~~~~~~---------~~~l~l~Dt~G~e~~~~~~ 165 (284)
....+||+|+|++|||||||+++|.++.+. ...+|.+.++. .+.+.+++. .+.+.+|||+|++++..++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 345799999999999999999999999887 55668888887 667777766 7899999999999999999
Q ss_pred cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023316 166 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 243 (284)
Q Consensus 166 ~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 243 (284)
..+++++|++|+|||++++.+++++..|+..+..... ..|.++|+||+|+. +. .....++++++++.++++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE----DQ-RAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-cccCHHHHHHHHHHcCCCEE
Confidence 9999999999999999999999999999999988763 44558999999962 11 22336778889999999999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 244 FSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 244 ~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
++||++|.|++++|+++.+.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
No 56
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.4e-30 Score=209.47 Aligned_cols=161 Identities=20% Similarity=0.260 Sum_probs=137.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+. ...+|++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999887 4445666554 4667778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN 254 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~Sa~~~~~v~ 254 (284)
|||++++++|+.+..|+..+.... ...|.++|+||+|+. ++ .....+++..+++.+ +++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----DE-RVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc----cc-ccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 999999999999999999987762 344558999999962 11 223367788889887 7899999999999999
Q ss_pred HHHHHHHHHHh
Q 023316 255 KIFKFIMAKLF 265 (284)
Q Consensus 255 ~lf~~l~~~i~ 265 (284)
++|+++.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 57
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=6.1e-31 Score=219.72 Aligned_cols=166 Identities=25% Similarity=0.356 Sum_probs=144.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|++..+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 34799999999999999999999999988 55668899998888888998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC-----CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHN 250 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~-----~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~~ 250 (284)
+|||++++.+|+++..|+..+..... ..|.++|+||+|+. ......+++..+++ ..+++++++||++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE------NRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS------CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc------ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 99999999999999999999877642 34558999999972 12233667778887 66889999999999
Q ss_pred cCHHHHHHHHHHHHhCCcc
Q 023316 251 INVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~~ 269 (284)
.|++++|+++++.+.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQET 178 (207)
T ss_dssp BSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999876554
No 58
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=9.3e-31 Score=215.26 Aligned_cols=168 Identities=25% Similarity=0.325 Sum_probs=140.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...+|.+.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 34799999999999999999999999987 4455777665 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCC------CC-cccchHHHHHHHHHHcC-CcEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------PD-LQWTIATQARAYAKAMK-ATLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~------~~-~~~~~~~~~~~~a~~~~-~~~~~~Sa 247 (284)
+|||++++++|+++ ..|+..+..+.+..|.|+|+||+|+..+.. .. ...+..+++..+++.++ ++++++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999999 799999988876666689999999731100 00 12234678899999988 69999999
Q ss_pred C-CCcCHHHHHHHHHHHHhC
Q 023316 248 T-HNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 248 ~-~~~~v~~lf~~l~~~i~~ 266 (284)
+ ++.|++++|+.+++.++.
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998865
No 59
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=3.3e-30 Score=215.13 Aligned_cols=168 Identities=21% Similarity=0.319 Sum_probs=141.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+. ...+|++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35799999999999999999999999988 44557777665 45678899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++++|+++ ..|+..+....+..|.++|+||+|+...... ..+.+..+++..+++..++ +++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSA 181 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeC
Confidence 99999999999999 6899999887766666899999997321000 0012336788899999998 8999999
Q ss_pred CCCcCHHHHHHHHHHHHhC
Q 023316 248 THNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~ 266 (284)
++|.|++++|+++.+.+++
T Consensus 182 ~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 182 KTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 60
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=7.6e-31 Score=214.95 Aligned_cols=165 Identities=16% Similarity=0.234 Sum_probs=140.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 45799999999999999999999999887444 4555554 456778898899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++++.+..|+..+..... ..|.++|+||+|+. +. .....++++.+++.++++++++||+++.|++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 169 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----cc-CccCHHHHHHHHHHcCCeEEEeCCCCCCCHH
Confidence 99999999999999999999988754 44558999999962 21 2234677888999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023316 255 KIFKFIMAKLFNLP 268 (284)
Q Consensus 255 ~lf~~l~~~i~~~~ 268 (284)
++|+++.+.+.+..
T Consensus 170 ~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 170 KVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886543
No 61
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.4e-30 Score=212.53 Aligned_cols=165 Identities=24% Similarity=0.388 Sum_probs=129.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+||+++|++|||||||+++|+++.+. ...++++.++....+.++ +..+.+.+|||+|++.+..++..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 34799999999999999999999999887 555688888888888777 6678899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH 249 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~Sa~~ 249 (284)
|+|||++++.+++++..|+..+.... ...|.++|+||+|+ .+..+.+..+++..+++ ..+++++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc----ccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999999999999999999987764 34455899999996 22222334677888888 4678999999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.|++++|+++.+.+.+
T Consensus 162 ~~gi~~l~~~l~~~~~~ 178 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQ 178 (182)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 62
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=216.54 Aligned_cols=164 Identities=16% Similarity=0.237 Sum_probs=141.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|.++.+...+ +|++..+ ...+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 45799999999999999999999999987444 4666544 466778998899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||++++++|+.+..|+..+..... ..|.++|+||+|+. +. ..+..+++..+++.++++++++||++|.|++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 165 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE----DK-RQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG----GG-CCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc----cc-ccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence 99999999999999999999988754 44558999999962 21 2234678888999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023316 255 KIFKFIMAKLFNL 267 (284)
Q Consensus 255 ~lf~~l~~~i~~~ 267 (284)
++|+++++.+...
T Consensus 166 ~l~~~l~~~i~~~ 178 (206)
T 2bov_A 166 KVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988754
No 63
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.3e-30 Score=219.83 Aligned_cols=171 Identities=24% Similarity=0.322 Sum_probs=123.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+... .+|++.. ....+.+++..+.+.+|||+|+++|..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3479999999999999999999999988744 4455544 4566788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++++|+++. .|+..+.......|.|+|+||+|+...... ....+..+++..+++.+++ +++++||
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 190 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA 190 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence 999999999999997 799999888766676899999997311000 0012336778899999998 9999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcc
Q 023316 248 THNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++|.|++++|+++++.+.+.++
T Consensus 191 ~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 191 RLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp TTTBSHHHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999876544
No 64
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-30 Score=216.86 Aligned_cols=163 Identities=25% Similarity=0.440 Sum_probs=144.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+|+|++|||||||+++|++..+. ...++++.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 98 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL 98 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999999987 566788999988889999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||++++.+|+.+..|+..+........| |+|+||+|+. ......+++..+++.++++++++||++|.|++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME------TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS------SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc------ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999887664455 7999999961 1223367788899999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|.++...+.+.
T Consensus 173 ~~~l~~~~~~~ 183 (213)
T 3cph_A 173 FFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887643
No 65
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=2e-31 Score=224.73 Aligned_cols=165 Identities=25% Similarity=0.410 Sum_probs=142.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe----------EEEEEEEeCCCCcCCccccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 166 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~----------~~~l~l~Dt~G~e~~~~~~~ 166 (284)
...+||+|+|++|||||||+++|+++.+. ...+|++.++..+.+.+++. .+.+.+|||+|+++|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45799999999999999999999999887 45568888888888888776 78899999999999999999
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
.+++.+|++|+|||++++.+++++..|+..+.... ...|.|+|+||+|+. .. .....++++++++.+++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP----DQ-REVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc----cc-cccCHHHHHHHHHHCCCcEEE
Confidence 99999999999999999999999999999886654 334447999999962 11 223367888999999999999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCC
Q 023316 245 SSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+||+++.|++++|+++.+.+.+.
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 66
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=4.4e-30 Score=211.83 Aligned_cols=162 Identities=15% Similarity=0.230 Sum_probs=128.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|.++.+...+. +++.. ....+.+++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 457999999999999999999999998874444 55544 4467778899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|||+++..+++++..|+..+..... ..|.++|+||+|+. + .....++++++++.++++++++||++|.|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP----T--RTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----C--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC----c--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999887643 44558999999962 1 2234677889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++.+.+.+
T Consensus 172 ~l~~~l~~~~~~ 183 (190)
T 3con_A 172 DAFYTLVREIRQ 183 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=1.9e-32 Score=228.37 Aligned_cols=164 Identities=21% Similarity=0.423 Sum_probs=134.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++.+. ...++++.++....+.+++..+.+.+|||+|++++..++..+++.+|++|
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 45799999999999999999999999887 44568888998899999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||++++++|+.+..|+..+.......+| |+|+||+|+. +. +....++++.+++.++++++++||++|.||++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----TK-KVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC----cc-ccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999887665555 7999999973 11 11223456788899999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023316 256 IFKFIMAKLFN 266 (284)
Q Consensus 256 lf~~l~~~i~~ 266 (284)
+|+++++.+.+
T Consensus 186 l~~~l~~~l~~ 196 (199)
T 3l0i_B 186 SFMTMAAEIKK 196 (199)
T ss_dssp HHHHHTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 68
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=4.3e-30 Score=213.06 Aligned_cols=161 Identities=23% Similarity=0.418 Sum_probs=140.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE------------------------------
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 147 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~------------------------------ 147 (284)
..+||+|+|++|||||||+++|++..+. ...+|++.++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4699999999999999999999999988 555688988888888887765
Q ss_pred -------EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 148 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 148 -------~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+.+.+|||+|++.+..++..+++.+|++|+|||++++.+++++..|+..+..... .|.++|+||+|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~----- 159 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDK----- 159 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTC-----
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCc-----
Confidence 8899999999999999999999999999999999999999999999999988765 455899999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 221 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
.......++++++++..+++++++||++|.|++++|+++.+.+.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 112234678899999999999999999999999999999988864
No 69
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2.3e-30 Score=207.84 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=137.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+...+ ++++ +.....+.+++..+.+.+|||+|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 3689999999999999999999999887444 4555 4446778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
|||++++.+++++..|+..+.+... ..|.++|+||+|+. .. .....+++..+++.++++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE----SE-REVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc----cc-ccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence 9999999999999999999887643 44558999999962 11 22346778889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 023316 256 IFKFIMAKLF 265 (284)
Q Consensus 256 lf~~l~~~i~ 265 (284)
+|+++.+.+.
T Consensus 156 l~~~l~~~~~ 165 (167)
T 1kao_A 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 70
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=3.8e-31 Score=223.94 Aligned_cols=169 Identities=24% Similarity=0.337 Sum_probs=147.1
Q ss_pred CCceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcE
Q 023316 96 SDLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 174 (284)
Q Consensus 96 ~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ 174 (284)
.....+||+|+|++|||||||+++|+.+.+. ...++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 3455799999999999999999998887776 445688899988889999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 175 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 175 iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
+|+|||++++.+|+++..|+..+.+.....|.|+|+||+|+.+. . . ..+...+++..+++++++||++|.|++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~----~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 163 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR----K--V-KAKSIVFHRKKNLQYYDISAKSNYNFE 163 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC----S--S-CGGGCCHHHHHTCEEEECBGGGTBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc----c--c-cHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999999998776677899999997321 1 1 224566788889999999999999999
Q ss_pred HHHHHHHHHHhCCcccc
Q 023316 255 KIFKFIMAKLFNLPWTV 271 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~~ 271 (284)
++|+++.+.+...+...
T Consensus 164 ~l~~~l~~~l~~~~~~~ 180 (221)
T 3gj0_A 164 KPFLWLARKLIGDPNLE 180 (221)
T ss_dssp HHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHhCcccc
Confidence 99999999998876543
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=4.4e-31 Score=215.86 Aligned_cols=163 Identities=22% Similarity=0.369 Sum_probs=126.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+.. ..+|++..+. ..+.+++..+.+++|||+|++++..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 46899999999999999999999998874 4456665543 345567788889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc---------cchHHHHHHHHHHcCC-cEEEEc
Q 023316 178 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ---------WTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 178 v~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
|||++++++|+++. .|+..+..+....|.++|+||+|+. +... .+..+++.++++.+++ +++++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 161 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR----DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS 161 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh----cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE
Confidence 99999999999997 7999999887666668999999962 2211 1246778899999997 999999
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023316 247 ATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~ 266 (284)
|++|.|++++|+++++.+++
T Consensus 162 a~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 162 SKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TTTCTTHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998764
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=1.7e-30 Score=217.69 Aligned_cols=167 Identities=23% Similarity=0.328 Sum_probs=136.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
....+||+++|++|||||||+++|+++.+...+. +++ +.....+.+++..+.+.+|||+|++++..++..+++.+|++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 3457999999999999999999999999885444 554 55567778889999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 176 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
|+|||++++.+|+++. .|+..+.......|.|+|+||+|+...... .......+++..+++.+++ +++++|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 185 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee
Confidence 9999999999999997 899999988766666899999996211000 0011336778889999986 599999
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 023316 247 ATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i 264 (284)
|++|.||+++|+++.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTTCTTHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998765
No 73
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=8.7e-30 Score=213.57 Aligned_cols=171 Identities=20% Similarity=0.315 Sum_probs=139.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+.. ..+|++.++. ..+.+++..+.+.+|||+|++++..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 457999999999999999999999999884 4456676654 44678898999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHH-HHHHHHHHhHCCCCceEEEEeCCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~-~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++++|+++ ..|+..+....+..|.|+|+||+|+...... ..+.+..+++..+++..++ +++++||
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA 181 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSA 181 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeC
Confidence 99999999999999 6899999887766677899999996211000 0012336678889999988 8999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcc
Q 023316 248 THNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++|.|++++|+++.+.+++...
T Consensus 182 ~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 182 KTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp TTCTTHHHHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999886644
No 74
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.3e-29 Score=202.96 Aligned_cols=160 Identities=15% Similarity=0.232 Sum_probs=137.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCccc-ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||++++.++.+...+. +++.. ....+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 5899999999999999999999998874444 55543 456777889899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHCC--CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~~--~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
||++++.+++++..|+..+..... ..|.++|+||+|+. + .....+++.++++.++++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA----A--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS----C--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh----h--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999999887754 45558999999962 1 223367788899999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
|+++.+.+.+
T Consensus 156 ~~~l~~~~~~ 165 (166)
T 2ce2_X 156 FYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=8.1e-31 Score=218.77 Aligned_cols=166 Identities=14% Similarity=0.274 Sum_probs=109.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEECCe--EEEEEEEeCCCCcCCcccccccccCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 172 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~~~~--~~~l~l~Dt~G~e~~~~~~~~~~~~a 172 (284)
...+||+|+|++|||||||+++|+++ .+. ...+|++.++..+.+.+++. .+.+.+|||+|++++..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999999998 776 44568888888889999887 88999999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
|++|+|||++++.+|+.+..|+..+..+.. ..+| ++|+||+|+. +....+..+++..+++.++++++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----PQRHQVRLDMAQDWATTNTLDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----hhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence 999999999999999999999999998865 3444 7999999962 2012234678899999999999999999
Q ss_pred C-CcCHHHHHHHHHHHHhCC
Q 023316 249 H-NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 249 ~-~~~v~~lf~~l~~~i~~~ 267 (284)
+ |.|++++|+++.+.+.+.
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp ------CHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHH
Confidence 9 999999999999988654
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=1.1e-30 Score=215.79 Aligned_cols=163 Identities=14% Similarity=0.085 Sum_probs=135.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-C-----------cccccceeeeeEEE-EECCeEEEEEEEeCCCCcCCcc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-R-----------SLQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~-----------~~~t~~~~~~~~~~-~~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
....+||+|+|++|||||||++.+.+ .+. . ..+|.+.++....+ .+++..+.+++|||+|+++|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35689999999999999999965554 444 3 23477777777666 6788889999999999999999
Q ss_pred cccccccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH
Q 023316 164 HVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA 237 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~------~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~ 237 (284)
++..+++++|++|+|||++ +.++|+.+..|+.++.......|.+||+||+||. .. ...++++++++.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~~~~~~~~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP----DA---LPVEMVRAVVDP 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST----TC---CCHHHHHHHHCT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc----cc---cCHHHHHHHHHh
Confidence 9999999999999999999 6678888889998885444455558999999962 21 346788899999
Q ss_pred cCC-cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 238 MKA-TLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 238 ~~~-~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++ +++++||++|.|++++|+++++.+.+.
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999 999999999999999999999988754
No 77
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.4e-30 Score=205.47 Aligned_cols=162 Identities=19% Similarity=0.302 Sum_probs=136.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|+++.+. ...++.+.++ ...+..++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 689999999999999999999999887 4445666554 35567788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
||++++++++++..|+..+.+.. ...|.++|+||+|+. +. +....+++..+++.++++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES----PS-REVQSSEAEALARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc----cc-cccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence 99999999999999998887753 345558999999962 11 22335677888899999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|+++.+.+...
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
No 78
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.1e-29 Score=210.88 Aligned_cols=162 Identities=14% Similarity=0.222 Sum_probs=137.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||+++|+++++.. ..+|++.++ ...+.+++..+.+.+|||+|++. ..++..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 457999999999999999999999999884 445666554 56677899999999999999998 778888999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-CH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-NV 253 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~-~v 253 (284)
+|||++++++|+++..|+..+.... ...|.|+|+||+|+. +. ..+..+++..+++.++++++++||++|. |+
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi 178 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD----HS-RQVSTEEGEKLATELACAFYECSACTGEGNI 178 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG----GG-CCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence 9999999999999999999988753 344558999999962 11 2234678889999999999999999999 99
Q ss_pred HHHHHHHHHHHhC
Q 023316 254 NKIFKFIMAKLFN 266 (284)
Q Consensus 254 ~~lf~~l~~~i~~ 266 (284)
+++|+++++.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (196)
T 2atv_A 179 TEIFYELCREVRR 191 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998864
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=4.9e-30 Score=216.40 Aligned_cols=170 Identities=22% Similarity=0.274 Sum_probs=142.4
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeeeeEEEEEC-CeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+||+|+|++|||||||+++|+++.+.. ..++.+.+.....+... +..+.+.+|||+|++.+..++..+++.+|++
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 457999999999999999999999988874 44577777766666554 4458899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|+|||++++.+++++..|+..+........| |+|+||+|+. + ......+++..+++..+++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (218)
T 4djt_A 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK----N-RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163 (218)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTTTBTTT
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 9999999999999999999999887655444 7999999962 2 12334677888889999999999999999999
Q ss_pred HHHHHHHHHHhCCccccc
Q 023316 255 KIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~~~ 272 (284)
++|+++++.+.+......
T Consensus 164 ~l~~~l~~~~~~~~~~~~ 181 (218)
T 4djt_A 164 LPFLHLARIFTGRPDLIF 181 (218)
T ss_dssp HHHHHHHHHHHCCTTCCB
T ss_pred HHHHHHHHHHhccccccc
Confidence 999999999987765443
No 80
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=6.1e-30 Score=212.70 Aligned_cols=161 Identities=20% Similarity=0.217 Sum_probs=126.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEE--E-CCeEEEEEEEeCCCCcCCcccc---cccccC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLM--V-QGARIAFSIWDVGGDSRSFDHV---PIACKD 171 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~--~-~~~~~~l~l~Dt~G~e~~~~~~---~~~~~~ 171 (284)
...+||+++|++|||||||++++.+. +.. .++.+.++..+.+. + ++..+.+++|||+|+++|..+. ..++++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHK-MSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSC-CCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhc-CCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 34799999999999999999987764 332 24555555544443 3 3677889999999999998877 799999
Q ss_pred CcEEEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC-----cccchHHHHHHHHH----HcCC
Q 023316 172 AVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAK----AMKA 240 (284)
Q Consensus 172 ad~iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~a~----~~~~ 240 (284)
+|++|+|||++++ ++++.+..|+.++.......|.+|||||+|| .+++ .+.+..+++..+++ .+++
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 172 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG---LSDDHKIETQRDIHQRANDDLADAGLEKLHL 172 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc---CchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence 9999999999998 7778888888888766666666899999996 2211 12223566778888 7789
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 241 TLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 241 ~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+|+++||++ .||+++|+.+++.+
T Consensus 173 ~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 173 SFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EEEEECTTS-THHHHHHHHHHHHT
T ss_pred ceEEEEech-hhHHHHHHHHHHHh
Confidence 999999999 99999999999876
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.3e-29 Score=208.71 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=139.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|.++.+. ...+|.+..+ ...+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 3689999999999999999999999887 4445666544 3556778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|||++++.+++++..|+..+..... ..|.|+|+||+|+. + .....+++..+++.++++++++||++|.|++
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET----Q--REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS----S--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC----c--cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 9999999999999999888776532 34558999999972 1 2233677888899999999999999999999
Q ss_pred HHHHHHHHHHhCCccc
Q 023316 255 KIFKFIMAKLFNLPWT 270 (284)
Q Consensus 255 ~lf~~l~~~i~~~~~~ 270 (284)
++|+++++.+......
T Consensus 160 ~l~~~l~~~~~~~~~~ 175 (199)
T 2gf0_A 160 ELFQELLTLETRRNMS 175 (199)
T ss_dssp HHHHHHHHHCSSSCEE
T ss_pred HHHHHHHHHHhhhhcc
Confidence 9999999988766443
No 82
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=4.1e-30 Score=211.69 Aligned_cols=167 Identities=16% Similarity=0.331 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC--CCC-CcccccceeeeeEEEEE---CCeEEEEEEEeCCCCcCCcccccccccCCc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 173 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~--~~~-~~~~t~~~~~~~~~~~~---~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad 173 (284)
.+||+++|++|||||||+++|++. .+. ...+|+|.++..+.+.+ ++..+.+++|||+|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 444 34568898887776654 345778999999999999999999999999
Q ss_pred EEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc--chHHHHHHHHHHcCCc----EEEEc
Q 023316 174 AILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW--TIATQARAYAKAMKAT----LFFSS 246 (284)
Q Consensus 174 ~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~--~~~~~~~~~a~~~~~~----~~~~S 246 (284)
++++|||++++ .+|+++..|+.++.......|.|+||||+|+ .+.... ...+.+..+++.++++ ++++|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV----SDEKQRKACMSKITKELLNKRGFPAIRDYHFVN 157 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGG----CCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCc----ccchhhHHHHHHHHHHHHHhcCCcchhheEEEe
Confidence 99999999997 5899999999999887655555899999996 222111 1134456677777887 99999
Q ss_pred CCCCc-CHHHHHHHHHHHHhCCccc
Q 023316 247 ATHNI-NVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 247 a~~~~-~v~~lf~~l~~~i~~~~~~ 270 (284)
|++|. +++++++.+.+.+.+.++.
T Consensus 158 a~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 158 ATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp TTSCCHHHHHHHHHHHHHHHCC---
T ss_pred cccCchhHHHHHHHHHHHHhccccC
Confidence 99996 9999999999998876553
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.7e-29 Score=202.95 Aligned_cols=159 Identities=18% Similarity=0.199 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEe
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 180 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d 180 (284)
+||+++|++|||||||+++|+++.+....+|.+.. ...+..+ .+.+++|||+|++++..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999998887666777743 3444444 4678899999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023316 181 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKIF 257 (284)
Q Consensus 181 ~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf 257 (284)
++++++|+.+..|+..+.... ...|.++|+||+|+... ...... ......+++..+++++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC---CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 999999999999998886532 24455899999997321 111111 111111222345679999999999999999
Q ss_pred HHHHHHHhC
Q 023316 258 KFIMAKLFN 266 (284)
Q Consensus 258 ~~l~~~i~~ 266 (284)
+++.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988753
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=5.1e-29 Score=201.36 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=127.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 179 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~ 179 (284)
.+||+++|++|||||||+++|.++.+....+|++... ..+.+++ +.+.+|||+|++++..++..+++++|++|+||
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYKN--LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEETT--EEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEECC--EEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 6899999999999999999999998876667777543 4555664 66889999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 180 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 180 d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|++++++|+++..|+..+.... ...|.++|+||+|+... ...... ......+++..+++++++||++|.|++++
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQA---MTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA 159 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC---CCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence 9999999999999988876542 34455899999997321 111111 11112233445678999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|+++.+.+.+.
T Consensus 160 ~~~l~~~i~~~ 170 (171)
T 1upt_A 160 MEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhc
Confidence 99999988653
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=4.1e-29 Score=207.13 Aligned_cols=163 Identities=15% Similarity=0.187 Sum_probs=125.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC-c-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER-S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 175 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~i 175 (284)
...+||+|+|++|||||||+++|+++.+.. . .+|++.... .+. +..+.+.+|||+|++++..++..+++++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 347899999999999999999999999875 3 457774433 333 4457788999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhHC---------CCCceEEEEeCCCCCCCCCCCcccch-HHH-HHHHHHHcCCcEEE
Q 023316 176 LFMFDLTSRCTLNSIVGWYSEARKWN---------QTAIPILIGTKFDDFVRLPPDLQWTI-ATQ-ARAYAKAMKATLFF 244 (284)
Q Consensus 176 ilv~d~~~~~s~~~~~~~~~~l~~~~---------~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~-~~~~a~~~~~~~~~ 244 (284)
|+|||++++++|+++..|+..+.... ...|.|||+||+||... ...... ... ...+++..++++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA---KTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC---CCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC---CCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999998886541 14455899999997322 111111 111 12223557889999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCC
Q 023316 245 SSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+||++|.||+++|++|++.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988654
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=5.7e-29 Score=204.93 Aligned_cols=161 Identities=15% Similarity=0.171 Sum_probs=123.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|+++++....+|.+.+ ...+.+++ +.+++|||+|++++..++..+++++|++|+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSN--VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSS--CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 3689999999999999999999998887555677744 44566665 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~ 251 (284)
||++++++|+++..|+..+.+.. ...|.++|+||+|+.. .. ..++..+.. +..+++++++||++|.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----CM---TVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT----CC---CHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC----CC---CHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 99999999999999999987652 3445589999999732 11 122222222 2346789999999999
Q ss_pred CHHHHHHHHHHHHhCCccc
Q 023316 252 NVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~~~~~ 270 (284)
|++++|+++++.+...+..
T Consensus 164 gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp THHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 9999999999998766543
No 87
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.5e-29 Score=206.17 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|+++++....+|.|.+. ..+.+++ +.+.+|||+|++++..++..+++++|++|+|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 36999999999999999999999998855555777554 4566666 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~ 251 (284)
||++++++|+++..|+..+.+. ....|.|+|+||+||... . ..++..+.. +..+++++++||++|.
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC----M---TVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC----C---CHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC----C---CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999888764 234455899999997321 1 112222221 2345689999999999
Q ss_pred CHHHHHHHHHHH
Q 023316 252 NVNKIFKFIMAK 263 (284)
Q Consensus 252 ~v~~lf~~l~~~ 263 (284)
|++++|+++++.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998754
No 88
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.1e-28 Score=205.79 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=119.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.++++....+|.+.+ ...+.+++ +.+++|||+|+++++.++..+++++|++|+|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 3689999999999999999999998876555677765 35667777 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-----------------cC
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-----------------MK 239 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-----------------~~ 239 (284)
||++++++|+++..|+.++.+.. .+.|.++|+||+|+.. ....+++.+++.. .+
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-------AISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-------cCCHHHHHHHhCcccccccccccccccccCce
Confidence 99999999999999999887642 3445589999999631 1224555555542 34
Q ss_pred CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 240 ATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 240 ~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
+++++|||++|.|++++|+++.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 6799999999999999999997643
No 89
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.9e-28 Score=202.24 Aligned_cols=157 Identities=15% Similarity=0.166 Sum_probs=124.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC-CC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
..+||+|+|++|||||||+++|++.. +. ...+|++ +....+.+++ +.+.+|||+|++++..++..+++++|++|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 36999999999999999999999988 44 4445666 4445666665 56889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHC----CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcC
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~----~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-----~~~~~~~~~Sa 247 (284)
+|||++++++|+++..|+..+.... ...|.|+|+||+|+.. . ...++..+++. ..+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD----A---VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc----C---CCHHHHHHHhChhhccCCceEEEEccC
Confidence 9999999999999999999887753 2445589999999731 1 11233444442 23678999999
Q ss_pred CCCcCHHHHHHHHHHHHhC
Q 023316 248 THNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~ 266 (284)
++|.|++++|+++.+.+.+
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987743
No 90
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.7e-29 Score=207.37 Aligned_cols=161 Identities=16% Similarity=0.219 Sum_probs=124.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+|+|++|||||||+++|+++++. ...+|++.++. .+... .+.+.+|||+|++++..++..+++++|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 4799999999999999999999999887 55668887764 33334 4678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|||++++++++.+..|+..+... ....|.++|+||+|+... ...... ......++...+++++++||++|.|++
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 173 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA---LDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC---CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence 99999999999999999888664 234455899999997321 111110 111111122345689999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++.+.+..
T Consensus 174 ~l~~~l~~~~~~ 185 (188)
T 1zd9_A 174 ITLQWLIQHSKS 185 (188)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 91
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=3.1e-28 Score=201.61 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=124.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.++++....+|.+.+ ...+.+++ +.+.+|||+|+++++.++..+++++|++|+|
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 4679999999999999999999999887655677764 45667777 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEE
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFF 244 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~------------~~~~~~~ 244 (284)
||++++++|+++..|+..+.+.. ...|.++|+||+|+.. ....+++.+++.. .++++++
T Consensus 98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (190)
T 1m2o_B 98 VDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-------AVSEAELRSALGLLNTTGSQRIEGQRPVEVFM 170 (190)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-------CCCHHHHHHHTTCSSCCC---CCSSCCEEEEE
T ss_pred EECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-------CCCHHHHHHHhCCccccccccccccceEEEEE
Confidence 99999999999999999887642 3445589999999732 1223444444332 3568999
Q ss_pred EcCCCCcCHHHHHHHHHHH
Q 023316 245 SSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~ 263 (284)
+||++|.|++++|+++++.
T Consensus 171 ~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 171 CSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CBTTTTBSHHHHHHHHHTT
T ss_pred eECCcCCCHHHHHHHHHhh
Confidence 9999999999999998754
No 92
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.96 E-value=1.4e-27 Score=198.94 Aligned_cols=164 Identities=26% Similarity=0.462 Sum_probs=141.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||++++.+..+. ...+|+|.++....+.++|..+.+.+|||+|++++..++..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 4689999999999999999999999887 555788889888899999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
|||+++..+++++..|+..+........| ++|+||+||. +. .....++++.++...++.++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~----~~-~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc----cc-cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999988776544444 7999999962 11 222356788999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023316 257 FKFIMAKLFNL 267 (284)
Q Consensus 257 f~~l~~~i~~~ 267 (284)
|+++.+.+.+.
T Consensus 159 ~~~l~~~~~~~ 169 (199)
T 2f9l_A 159 FKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888653
No 93
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=8.6e-29 Score=205.32 Aligned_cols=162 Identities=16% Similarity=0.195 Sum_probs=120.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+||+++|++|||||||+++|+++++....+|.+.. ...+..++ +.+.+|||+|++++..++..+++++|++|+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIF 102 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 34699999999999999999999998887656677743 34555554 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
|||++++++|+.+..|+..+.... ...|.++|+||+|+.+. ...... ......+++..+++++++||++|.|++
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 179 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY 179 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence 999999999999999998886542 24455899999997321 110111 111111222345679999999999999
Q ss_pred HHHHHHHHHHhC
Q 023316 255 KIFKFIMAKLFN 266 (284)
Q Consensus 255 ~lf~~l~~~i~~ 266 (284)
++|+++++.+.+
T Consensus 180 ~l~~~l~~~i~~ 191 (192)
T 2b6h_A 180 DGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 94
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1.4e-27 Score=197.87 Aligned_cols=162 Identities=25% Similarity=0.423 Sum_probs=142.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+|+|++|||||||++++.+..+. ...+|++.++....+.++|..+.+++||++|++++..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 34799999999999999999999999887 66679999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 177 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 177 lv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
+|||+++..+|+++..|+..+........+ ++++||+||. +. .....++++.++...++.++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~----~~-~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR----HL-RAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG----GG-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc----cc-cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999988776544444 7999999962 11 22236778899999999999999999999999
Q ss_pred HHHHHHHHH
Q 023316 256 IFKFIMAKL 264 (284)
Q Consensus 256 lf~~l~~~i 264 (284)
+|+.+.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 95
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=4e-29 Score=205.31 Aligned_cols=157 Identities=16% Similarity=0.211 Sum_probs=122.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.++.+....+|.|.+ ...+.+++ +.+++|||+|++.+..++..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 3689999999999999999999998765555677744 34566664 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHH-H----HHHcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-Y----AKAMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~----a~~~~~~~~~~Sa~~~~ 251 (284)
||++++++|+++..|+..+... ....|.++|+||+|+.. ... .++..+ + +...+++++++||++|.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT----AAP---ASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT----CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc----CCC---HHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 9999999999999998887543 23445589999999632 111 111211 1 12235689999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 023316 252 NVNKIFKFIMAKLFN 266 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~ 266 (284)
|++++|+++++.+.+
T Consensus 164 gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNA 178 (181)
T ss_dssp THHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 96
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=1.4e-29 Score=225.07 Aligned_cols=168 Identities=16% Similarity=0.168 Sum_probs=131.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---cccccccCCcE
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 174 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---~~~~~~~~ad~ 174 (284)
||+++|+.|||||||++++.++.+.. ..+|+|.++.. ++ ..+.+++|||+|||+|+. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988765442 24577877653 23 458899999999999975 46899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-----ccchHHHHHHHHHH----cCCcEE
Q 023316 175 ILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----QWTIATQARAYAKA----MKATLF 243 (284)
Q Consensus 175 iilv~d~~~~--~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-----~~~~~~~~~~~a~~----~~~~~~ 243 (284)
+|+|||++++ ++++.+..|++++.+..++.|.+|+|||+|| .+++. +.+..++++++|+. ++++|+
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL---~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG---LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS---SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc---CchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 9999999998 3344444556666666666566899999997 22221 22336777888886 689999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023316 244 FSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG 278 (284)
Q Consensus 244 ~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~ 278 (284)
+|||++ +||.++|..+++.+++.....|..++.-
T Consensus 153 eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~~ 186 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDNL 186 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTGG
T ss_pred EeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999997 6999999999999999888888776543
No 97
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=1.1e-27 Score=214.08 Aligned_cols=167 Identities=23% Similarity=0.329 Sum_probs=140.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcc-cccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
.+||+++|++|||||||+++|+++.+...+ +|++.. ....+.+++..+.+++|||+|++.+..++..+++.+|++|+|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEE-EEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccce-eEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 489999999999999999999999888444 455544 456778899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316 179 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATH 249 (284)
Q Consensus 179 ~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~-------~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~ 249 (284)
||++++.+|+++. .|+..+.......|.|+|+||+|+..... .....+..+++..+++..++ +++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999997 89999988877666689999999621100 00122347788999999997 999999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023316 250 NINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~ 267 (284)
|.|++++|+.+++.++..
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988764
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=2.1e-28 Score=201.79 Aligned_cols=162 Identities=17% Similarity=0.199 Sum_probs=126.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|.++++....+|++.. ...+.+++ +.+.+|||+|++++..++..+++++|++|+|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 4689999999999999999999988887666677744 34555654 6688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
||++++++++++..|+..+.... ...|.++|+||+|+... ...... .......++..+++++++||++|.|+++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA---ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence 99999999999999988886642 24455899999997321 111111 1111122233456899999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|+++.+.+.+.
T Consensus 174 l~~~l~~~i~~~ 185 (189)
T 2x77_A 174 GMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988644
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=1.3e-27 Score=196.26 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=126.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||+++|++++.....+|++.+ ...+.+++ +.+++|||+|++++..++..+++++|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV 92 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4699999999999999999999998844666677744 34555654 6688999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----a~~~~~~~~~~Sa~~~~ 251 (284)
||++++++|+++..|+..+.+. ....|.++|+||+|+.. ... .++..+. ++..+++++++||++|.
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (186)
T 1ksh_A 93 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG----ALS---CNAIQEALELDSIRSHHWRIQGCSAVTGE 165 (186)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC----CCC---HHHHHHHhChhhccCCceEEEEeeCCCCC
Confidence 9999999999999999888764 23445589999999732 111 1222221 12346789999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 023316 252 NVNKIFKFIMAKLFNL 267 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~~ 267 (284)
|++++|+++.+.+.+.
T Consensus 166 gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 166 DLLPGIDWLLDDISSR 181 (186)
T ss_dssp THHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988665
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.9e-30 Score=215.75 Aligned_cols=166 Identities=23% Similarity=0.328 Sum_probs=136.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc-ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 176 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~ii 176 (284)
...+||+++|++|||||||+++|+++.+... .+|++..+ ...+.+++..+.+++|||+|++++..++..+++++|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999888744 44555443 556677888889999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc-------ccchHHHHHHHHHHcCC-cEEEEcC
Q 023316 177 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKAMKA-TLFFSSA 247 (284)
Q Consensus 177 lv~d~~~~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~a~~~~~-~~~~~Sa 247 (284)
+|||++++++|+++. .|+..+.......|.|+|+||+|+........ .....+++..+++..++ +++++||
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA 186 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186 (204)
Confidence 999999999999997 89998887665555589999999732210000 12335677888888887 9999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 023316 248 THNINVNKIFKFIMAKL 264 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i 264 (284)
++|.|++++|+++++.+
T Consensus 187 ~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 187 LTQRGLKTVFDEAIRAV 203 (204)
Confidence 99999999999998765
No 101
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.2e-28 Score=212.20 Aligned_cols=161 Identities=15% Similarity=0.168 Sum_probs=124.9
Q ss_pred ceeeEEEEEcCC---------CCChHHHHHHHhc---CCCC-Cccccc-ceeeeeEEEE--------------ECCeEEE
Q 023316 98 LVSLKISLLGDC---------QIGKTSFVVKYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA 149 (284)
Q Consensus 98 ~~~~KI~llG~~---------~vGKSsLl~~l~~---~~~~-~~~~t~-~~~~~~~~~~--------------~~~~~~~ 149 (284)
...+||+|+|++ |||||||+++|++ +.+. ...+|+ +.++..+.+. +++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 346999999999 9999999999999 5565 445555 6665544432 4678889
Q ss_pred EEEEe-----------------------CCCCcCCccccccccc---------------------CCcEEEEEEeCCCh-
Q 023316 150 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR- 184 (284)
Q Consensus 150 l~l~D-----------------------t~G~e~~~~~~~~~~~---------------------~ad~iilv~d~~~~- 184 (284)
+++|| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 8899999999999988 79999999999998
Q ss_pred -hhHHHHHHHHHHHHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHH
Q 023316 185 -CTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFI 260 (284)
Q Consensus 185 -~s~~~~~~~~~~l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~-~~~~~~~~Sa~~~~~v~~lf~~l 260 (284)
+||+.+..|+..+.+. ....|+|||+||+|| .. .+.+ ++++++++. .+++++++||++|.||+++|+++
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl----~~--~~~v-~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE----GV--ERYI-RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG----BC--HHHH-HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccc----cc--cHHH-HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999998775 234555899999996 22 2222 577788877 48999999999999999999999
Q ss_pred HHHHh
Q 023316 261 MAKLF 265 (284)
Q Consensus 261 ~~~i~ 265 (284)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98763
No 102
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=5.1e-28 Score=197.93 Aligned_cols=157 Identities=20% Similarity=0.237 Sum_probs=121.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+++|++|||||||++++.++++....+|.+.. ...+.+++ +.+.+|||+|++++..++..+++++|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4699999999999999999999988876555677744 34556665 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 251 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a-----~~~~~~~~~~Sa~~~~ 251 (284)
||++++++++++..|+..+.... ...|.++|+||+|+... . ..++..+.. ...+++++++||++|.
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA----L---SASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC----C---CHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC----C---CHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999999999998887653 34455899999997321 1 122222222 1234579999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 023316 252 NVNKIFKFIMAKLFN 266 (284)
Q Consensus 252 ~v~~lf~~l~~~i~~ 266 (284)
|++++|+++.+.+.+
T Consensus 166 gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 166 GITEGLDWLIDVIKE 180 (183)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988753
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=2.1e-27 Score=192.05 Aligned_cols=152 Identities=15% Similarity=0.098 Sum_probs=116.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc--
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~-- 170 (284)
.+||+++|++|||||||+++|.+..+. ..+++++.+.....+.+++ ..+++|||+|++++. .+...|++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 589999999999999999999998776 6667777777777777776 468899999999876 34466665
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 250 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~ 250 (284)
+++++++|+|+++.+ ....|+..+.+. ..|.|+|+||+|+. . .+....++.++++.++++++++||++|
T Consensus 81 ~~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (165)
T 2wji_A 81 KPDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNKMDLA----K--SLGIEIDVDKLEKILGVKVVPLSAAKK 149 (165)
T ss_dssp CCSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBGGGT
T ss_pred CCCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEchHhc----c--ccChhhHHHHHHHHhCCCEEEEEcCCC
Confidence 899999999998854 345688777653 44558999999962 1 111112367788888999999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++|+++.+.+
T Consensus 150 ~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 150 MGIEELKKAISIAV 163 (165)
T ss_dssp BSHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998875
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.94 E-value=5.7e-27 Score=196.96 Aligned_cols=160 Identities=14% Similarity=0.120 Sum_probs=115.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCe-EEEEEEEeCCCCcCCcc-cccccccCCcEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAIL 176 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~~~~-~~~~~~~~ad~ii 176 (284)
..+||+++|++|||||||+++|+++.+...+++++.++.. +.+++. .+.+++|||+|++++.. ++..|++++|++|
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 4689999999999999999999999988777777766654 566644 57899999999999987 8889999999999
Q ss_pred EEEeCCChh-hHHHHHH-HHHHHHhH--CC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH---------------
Q 023316 177 FMFDLTSRC-TLNSIVG-WYSEARKW--NQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--------------- 236 (284)
Q Consensus 177 lv~d~~~~~-s~~~~~~-~~~~l~~~--~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~--------------- 236 (284)
+|||+++.. ++..+.. |.+.+... .. ..|.++|+||+||... .......+.......
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA---KSAKLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC---CCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc---ccHHHHHHHHHHHHHHHhccchhccccccC
Confidence 999999854 4666554 44444432 22 3444799999997322 111111122221111
Q ss_pred ------------------Hc--CCcEEEEcCCCC------cCHHHHHHHHHHH
Q 023316 237 ------------------AM--KATLFFSSATHN------INVNKIFKFIMAK 263 (284)
Q Consensus 237 ------------------~~--~~~~~~~Sa~~~------~~v~~lf~~l~~~ 263 (284)
.+ +++|++|||++| .||+++|+++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 668999999999 9999999999875
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=4.6e-27 Score=209.20 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=131.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--C--cccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-----ccccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--R--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACK 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-----~~~~~~~~~ 170 (284)
.+||+++|++|||||||+++|+++... . ..+|.+.++. .+.+++ .+.+++|||+|++++ ..++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 689999999999999999999988433 2 2236666554 444544 578999999999998 788999999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHH---HHHHHhHCCCCceEEEEeCCCCCCCCCCC-ccc----chHHHHHHHHHHcC---
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGW---YSEARKWNQTAIPILIGTKFDDFVRLPPD-LQW----TIATQARAYAKAMK--- 239 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~---~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~-~~~----~~~~~~~~~a~~~~--- 239 (284)
++|++|+|||++++++|+++..| +..+....++.|.++|+||+|+ .+. .+. ...+++.++++.+|
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl----~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL----VQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG----SCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc----cchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999766 4455555556666899999996 221 222 34678899999997
Q ss_pred CcEEEEcCCCCcCHHHHHHHHHHHHhCCccccc
Q 023316 240 ATLFFSSATHNINVNKIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 240 ~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~~~~ 272 (284)
++++++||++ .++.++|..+++.+.......+
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~le 187 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNMSNHQ 187 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTCSCHHHHH
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 7999999999 8999999999998876654443
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=210.94 Aligned_cols=162 Identities=18% Similarity=0.190 Sum_probs=119.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 178 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv 178 (284)
..+||+|+|++|||||||+++|.++.+....+|++.++. .+...+ +.+.||||+|++.|..++..+++.+|++|+|
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEETT--EEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecCc--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 468999999999999999999999988766677776654 344444 6788999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 179 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 179 ~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
||++++++|+.+..|+..+.... ...|.|||+||+|+... ...... .......++..+++++++||++|.||++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e 316 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA---MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE 316 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc---cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence 99999999999998887775543 24444799999996321 111001 1111111223356799999999999999
Q ss_pred HHHHHHHHHhCC
Q 023316 256 IFKFIMAKLFNL 267 (284)
Q Consensus 256 lf~~l~~~i~~~ 267 (284)
+|++|++.+.+.
T Consensus 317 l~~~l~~~l~~~ 328 (329)
T 3o47_A 317 GLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 107
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=1e-25 Score=183.18 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=118.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+||+++|++|||||||+++|+++.+. ...++++.++....+.+++.. +.+|||+|++++..++..++..+|++|+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 4689999999999999999999999888 556677777777788888865 5699999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH-------HcC--CcEEEEcCC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK--ATLFFSSAT 248 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~-------~~~--~~~~~~Sa~ 248 (284)
|||+++....+... ++..+.. ...|.++|+||+|+. ... .++.....+ .++ ++++++||+
T Consensus 85 v~d~~~~~~~~~~~-~l~~~~~--~~~p~ilv~nK~Dl~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 85 VVAADDGVMPQTVE-AINHAKA--ANVPIIVAINKMDKP----EAN----PDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEETTCCCCHHHHH-HHHHHGG--GSCCEEEEEETTTSS----CSC----HHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEECCCCCcHHHHH-HHHHHHh--CCCCEEEEEECccCC----cCC----HHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999854332222 2222221 244558999999962 211 111222222 222 589999999
Q ss_pred CCcCHHHHHHHHHHHHhCCcc
Q 023316 249 HNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~~~ 269 (284)
+|.|++++|+++++.+.....
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHhhhhhcc
Confidence 999999999999988765433
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2.1e-26 Score=217.60 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=125.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+||+|+|++|||||||+++|+++++....+|.+.++. .+.+++ +.+.+|||+|++.|..++..+++++|++|+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYKN--VKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESSS--CEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeCC--EEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999999998777778886654 344444 678899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHC--CCCceEEEEeCCCCCCCCCCCcccchHHHHHH-----HHHHcCCcEEEEcCCCC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARA-----YAKAMKATLFFSSATHN 250 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~a~~~~~~~~~~Sa~~~ 250 (284)
|||++++++|+++..|+.++.+.. ...|.|||+||+||.. ... .++... ++...+++++++||++|
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AMK---PHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS----CCC---HHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc----CCC---HHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 999999999999999988886542 2445589999999632 111 111111 11223456999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023316 251 INVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~ 268 (284)
.||+++|++|.+.+.+..
T Consensus 469 ~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp BTHHHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999998875543
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=5.5e-26 Score=186.71 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=124.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc-
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK- 170 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~- 170 (284)
..+||+++|++|||||||+++|++..+. ..+++++.+.....+.+++ ..+.+|||+|++.+. .+...|++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 4789999999999999999999998765 6667777777777777776 567899999999885 34566664
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 171 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 171 -~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
.++++++|+|.++ ++....|+..+.. ...|.|+|+||+|+. . .+...+++..+++.++++++++||++
T Consensus 84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (188)
T 2wjg_A 84 EKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLA----K--SLGIEIDVDKLEKILGVKVVPLSAAK 152 (188)
T ss_dssp HCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred cCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhcc----c--cccchHHHHHHHHHhCCCeEEEEecC
Confidence 5999999999875 5667788888765 234558999999962 1 11112356778888899999999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023316 250 NINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~~ 268 (284)
+.|++++|+++++.+.+..
T Consensus 153 ~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 153 KMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp TBSHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999887654
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=1e-26 Score=189.55 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=117.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~ 169 (284)
.+||+++|++|||||||+++|.+..+. ..+++++.++....+.+++.. +.+|||+|++++.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999999988753 556677778888888888755 6799999998754221 2368
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
+.+|++++|||++++.+++. ..|++.+.+.....+ .|+|+||+||.+. ... +++..+++++++||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~---~~~---------~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGE---TLG---------MSEVNGHALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCC---CCE---------EEEETTEEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcc---hhh---------hhhccCCceEEEeCC
Confidence 99999999999999988764 578888877654444 4899999996211 111 122246789999999
Q ss_pred CCcCHHHHHHHHHHHHhC
Q 023316 249 HNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~ 266 (284)
+|.|++++|+++.+.+..
T Consensus 149 ~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TCTTHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999887643
No 111
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=2.4e-25 Score=189.35 Aligned_cols=166 Identities=17% Similarity=0.122 Sum_probs=118.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc------C----Ccccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS------R----SFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e------~----~~~~~~~ 167 (284)
..+||+|+|++|||||||+++|+++.+. ...+.+..++....+..++ ..+.+|||+|+. + +.. ...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~ 104 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-ITA 104 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HHH
Confidence 3689999999999999999999998876 4444444444444444454 568899999994 3 222 233
Q ss_pred cccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEE
Q 023316 168 ACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLF 243 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~ 243 (284)
++..+|++|+|||++++.+|+ ....|+..+.......|.|+|+||+|+... ........+.+..++...+ ++++
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM--DSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc--hhhHHHHHHHHHHHHHhcCCCceEE
Confidence 578899999999999998875 234677777665445566899999997321 0111112345677888887 8999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 244 FSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 244 ~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++||++|.||+++|++++..+.+...
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875543
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=2.5e-26 Score=219.03 Aligned_cols=165 Identities=20% Similarity=0.308 Sum_probs=125.0
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEE------EEE--CCeEEEEEEEeCCCCcCCcccccc
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVPI 167 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~------~~~--~~~~~~l~l~Dt~G~e~~~~~~~~ 167 (284)
....+||+++|++|||||||+++++++.+. ...+|+|.++..+. +.+ ++..+.+.+|||+|++.+..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 455799999999999999999999999987 55568888877542 122 344678999999999999999999
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 247 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa 247 (284)
|++++|++|+|||+++. +.+..|+..+..+.++.|.|+|+||+|+. +. .....++++.++...+++++++||
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~----~~-~~v~~~~~~~~~~~~~~~~~~vSA 189 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDEN----PS-YNIEQKKINERFPAIENRFHRISC 189 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTC----TT-CCCCHHHHHHHCGGGTTCEEECCC
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcc----cc-cccCHHHHHHHHHhcCCceEEEec
Confidence 99999999999998765 56678999999988777778999999962 22 222366788888888999999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcc
Q 023316 248 THNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++|.|++++|+.+.+.+.+.+.
T Consensus 190 ~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 190 KNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp -----CTTHHHHHHHHHTCTTS
T ss_pred CcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999987654
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1e-24 Score=174.24 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-------cccccccccC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD 171 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-------~~~~~~~~~~ 171 (284)
.||+++|++|||||||+++|.+..+. ...++++.+.....+..++. .+.+|||+|++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999999998864 45556666777777777775 5779999999884 3345567899
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN 250 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~ 250 (284)
+|++++|||+++..+... .|+..+... ...|.++|+||+|+. +. .+++.+++ ..++ +++++||++|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~-~~~p~ilv~nK~Dl~----~~-----~~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR-KGKPVILVATKVDDP----KH-----ELYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH-HTCCEEEEEECCCSG----GG-----GGGCGGGG-GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh-cCCCEEEEEECcccc----cc-----hHhHHHHH-hCCCCCeEEEecccC
Confidence 999999999998655432 222222221 244558999999962 11 12334455 5677 8999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023316 251 INVNKIFKFIMAKL 264 (284)
Q Consensus 251 ~~v~~lf~~l~~~i 264 (284)
.|++++|+++++.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998764
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=9.3e-25 Score=180.38 Aligned_cols=155 Identities=17% Similarity=0.208 Sum_probs=106.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC----------CcCCcccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G----------~e~~~~~~~~ 167 (284)
..+||+|+|++|||||||+++|++..+. ...++.+.+.......+++ .+.+|||+| ++.+..++..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999999998865 3334555444444444544 478999999 6777777888
Q ss_pred cccCC---cEEEEEEeCCChhhHHHHH--HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc-hHHHHHH-HHHHcCC
Q 023316 168 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-IATQARA-YAKAMKA 240 (284)
Q Consensus 168 ~~~~a---d~iilv~d~~~~~s~~~~~--~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~-~~~~~~~-~a~~~~~ 240 (284)
+++.+ |++++|+|++++.++.+.. .|+.. ...|.++|+||+|+. +..... ..+++.+ ++...++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADKI----PKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGGS----CGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECcccC----ChHHHHHHHHHHHHHHcccCCC
Confidence 88777 9999999999988877643 44332 244558999999962 221111 1233333 3334467
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 241 TLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 241 ~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+++++||++|.|++++|+++.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999988763
No 115
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=8.9e-24 Score=188.03 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=132.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----------cccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHVP 166 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----------~~~~ 166 (284)
..-.|+++|.+|||||||+|+|++.++. ...+.++.+.....+..+ ....+.+|||+|+.++. ....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4678999999999999999999999876 334433334333344444 13567899999997755 4556
Q ss_pred ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023316 167 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF 244 (284)
Q Consensus 167 ~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~ 244 (284)
.+++++|++|+|+|+++..++++...|++.+... ..|.|+|+||+|+. . ......+....+++.++ .++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~---~--~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKI---G--PAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGS---S--SGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCC---C--CHHHHHHHHHHHHHhccCCCeEEE
Confidence 7889999999999999999999988888888763 34558999999962 1 12334666777888876 78999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023316 245 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG 278 (284)
Q Consensus 245 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~ 278 (284)
+||++|.|++++|+++...+.+.++........+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td 194 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITD 194 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence 9999999999999999999988776655544433
No 116
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=4.9e-25 Score=181.01 Aligned_cols=153 Identities=15% Similarity=0.167 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCC-----------CcCCccccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 168 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G-----------~e~~~~~~~~~ 168 (284)
+||+++|++|||||||+++|+++.+. ...++++.+ ...+.++ .+.+|||+| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRK--IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTS--CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccce--eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999999999887 444544433 3344444 578999999 66677778888
Q ss_pred ccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhH--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHH
Q 023316 169 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 236 (284)
Q Consensus 169 ~~~-ad~iilv~d~~~~~s~~~~-~~~~~~--------l~~~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~ 236 (284)
++. ++++++||++.+..+++++ ..|... +... ....|.++|+||+|+. ... .++++++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~----~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKI----KNV----QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGC----SCH----HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhcc----CcH----HHHHHHHHH
Confidence 887 9999999999999999887 677653 2221 2344558999999962 211 556778888
Q ss_pred HcCCc-------EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 237 AMKAT-------LFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 237 ~~~~~-------~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.++++ ++++||++|.|++++|+++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 88874 69999999999999999999988654
No 117
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=5e-24 Score=175.48 Aligned_cols=157 Identities=13% Similarity=0.129 Sum_probs=114.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC----------CcCCccccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA 168 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G----------~e~~~~~~~~~ 168 (284)
..+||+|+|++|||||||+++|++..+....++.+.+........+. .+.+|||+| ++.+..++..+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 46899999999999999999999998654444555444433333333 366999999 66677777778
Q ss_pred ccCC---cEEEEEEeCCChhhH--HHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC-CcE
Q 023316 169 CKDA---VAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATL 242 (284)
Q Consensus 169 ~~~a---d~iilv~d~~~~~s~--~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~ 242 (284)
++.+ +++++|+|.++..+. ..+..|+... ..|.++|+||+|+ .++.......++++.++...+ +++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDK---VKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGG---SCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhc---CChHHHHHHHHHHHHHHhhcCCCce
Confidence 7766 999999999876443 3344555543 4455899999996 222222333566777777744 799
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 243 FFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+++||++|.||+++|+++.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999988753
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.91 E-value=4.5e-24 Score=185.30 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=120.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc------ccccc--
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC-- 169 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~------~~~~~-- 169 (284)
..+||+++|++|||||||+++|++..+. ..+++++.+.....+..++ ..+.+|||+|+..+... ...|+
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999998876 6667666666666666655 56889999999988753 35666
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
..+|++++|+|+++.++. ..|...+.+. ..|.|+|+||+|+. . .+....+...+++.+|++++++||++
T Consensus 82 ~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~----~--~~~i~~~~~~l~~~lg~~vi~~SA~~ 150 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEA----K--KTGMKIDRYELQKHLGIPVVFTSSVT 150 (258)
T ss_dssp SCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHH----H--HTTCCBCHHHHHHHHCSCEEECCTTT
T ss_pred cCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCC----C--ccchHHHHHHHHHHcCCCEEEEEeeC
Confidence 589999999999987653 3466666543 44558999999962 1 11112246788889999999999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 023316 250 NINVNKIFKFIMAKLF 265 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~ 265 (284)
|.|++++|+++.+.+.
T Consensus 151 g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 151 GEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhh
Confidence 9999999999998775
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=5.5e-25 Score=204.76 Aligned_cols=249 Identities=15% Similarity=0.145 Sum_probs=151.1
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++.++...++.+|.+.++......+.+.++.....++++-++..... .+..+.... +-+...
T Consensus 72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~-----~~~iSA 146 (436)
T 2hjg_A 72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGE-----PYPISG 146 (436)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSCC-----CEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCCC-----eEEEeC
Confidence 455666677788888899999988776655555555544444455544333211 111111100 000001
Q ss_pred ccc--cccc----ccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEE
Q 023316 78 EAG--LVEL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIA 149 (284)
Q Consensus 78 ~~~--~~~~----~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~ 149 (284)
..| .... ............+...+||+++|++|||||||+|+|++.++. ..+++++.+.....+.+++..
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-- 224 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE-- 224 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--
T ss_pred cCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--
Confidence 111 0000 000000001112234689999999999999999999998874 667777778877888888865
Q ss_pred EEEEeCCCCc----------CCccccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 150 FSIWDVGGDS----------RSFDHVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 150 l~l~Dt~G~e----------~~~~~~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
+.+|||+|+. .|..+.. .+++.+|++|+|||++++.++++. .|+..+.. ...+.|+|+||+|+.
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~-- 299 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAV-- 299 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCC--
Confidence 7799999984 3433333 378899999999999999998875 57777654 234558999999973
Q ss_pred CCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 219 LPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 219 ~~~~~~~~~~~~~----~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+.......+.. +.++...+++++++||++|.|++++|+.+.+.+.+
T Consensus 300 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 300 --DKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp --CCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 22111111111 22333347899999999999999999999987764
No 120
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=5.2e-24 Score=191.75 Aligned_cols=203 Identities=16% Similarity=0.192 Sum_probs=142.6
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceee----EEEEEcCCCCChHHHHH
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFVV 118 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----KI~llG~~~vGKSsLl~ 118 (284)
.++++++.+|.+|.++.+..+++... |..+..+... ....-..++ +|+|+|.+|||||||++
T Consensus 111 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~leLk~la~V~lvG~~nvGKSTLln 176 (342)
T 1lnz_A 111 GQRAVIARGGRGGRGNSRFATPANPA-----PQLSENGEPG---------KERYIVLELKVLADVGLVGFPSVGKSTLLS 176 (342)
T ss_dssp TCEEEEECCCCCCCCGGGSCBTTBSS-----CCCCCCCCCC---------CEEEEEEEEECCCCEEEESSTTSSHHHHHH
T ss_pred CcEEEEeCCCCCccCccccccccccc-----cccccCCCCc---------chhhHhhhhhhcCeeeeeCCCCCCHHHHHH
Confidence 46789999998888775544433322 1111111111 000111123 58899999999999999
Q ss_pred HHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCc----CCcccccccccC---CcEEEEEEeCCC---hhhH
Q 023316 119 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACKD---AVAILFMFDLTS---RCTL 187 (284)
Q Consensus 119 ~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e----~~~~~~~~~~~~---ad~iilv~d~~~---~~s~ 187 (284)
+|++.++. ..++.++.+.....+.+++. ..+.+|||+|+. .+..+...|++. ++++|+|+|+++ ++++
T Consensus 177 ~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~ 255 (342)
T 1lnz_A 177 VVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY 255 (342)
T ss_dssp HSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH
T ss_pred HHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH
Confidence 99988765 55553333333345555542 357899999963 455666777654 999999999999 8899
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHHH
Q 023316 188 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 188 ~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
+++..|+.++..+.+ ..|.|+|+||+|+ ... .+...++++.++ .+++++||++++|++++|++|.+
T Consensus 256 ~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl----~~~-----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 256 DDYLTINQELSEYNLRLTERPQIIVANKMDM----PEA-----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp HHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TTH-----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEEECccC----CCC-----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence 999999999998753 4455899999996 211 234566777776 68999999999999999999999
Q ss_pred HHhCCcc
Q 023316 263 KLFNLPW 269 (284)
Q Consensus 263 ~i~~~~~ 269 (284)
.+.+.++
T Consensus 327 ~l~~~~~ 333 (342)
T 1lnz_A 327 QLENTPE 333 (342)
T ss_dssp HHTSCCC
T ss_pred HHhhCcc
Confidence 9876554
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.90 E-value=3.9e-24 Score=185.53 Aligned_cols=150 Identities=11% Similarity=0.065 Sum_probs=118.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc----------cccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 169 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~----------~~~~~~ 169 (284)
.||+++|.+|||||||+|+|++..+. ...++++.+.....+.+++. .+.+|||+|+..+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999998766 67788888888888888876 578999999998764 456677
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316 170 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 247 (284)
Q Consensus 170 --~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa 247 (284)
..+|++|+|+|+++.+++..+..|+.++ ..|.|+|+||+|+. . ..........+++.++++++++||
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~-----~~pvilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~vi~~SA 148 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFEL-----GKPVVVALNMMDIA----E--HRGISIDTEKLESLLGCSVIPIQA 148 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTTS-----CSCEEEEEECHHHH----H--HTTCEECHHHHHHHHCSCEEECBG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHHc-----CCCEEEEEEChhcC----C--cCCcHHHHHHHHHHcCCCEEEEEC
Confidence 8999999999999977665544443321 44558999999962 1 111112345677888999999999
Q ss_pred CCCcCHHHHHHHHHHH
Q 023316 248 THNINVNKIFKFIMAK 263 (284)
Q Consensus 248 ~~~~~v~~lf~~l~~~ 263 (284)
++|.|++++|+++.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999876
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.90 E-value=6.6e-24 Score=185.59 Aligned_cols=152 Identities=16% Similarity=0.065 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------cccccccc--
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------~~~~~~~~-- 170 (284)
.+||+++|++|||||||+++|++..+. ..+++++.+. +...++. ...+.+|||+|++.+. .+.+.|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999999998744 6666544443 3444554 5678899999999886 35566775
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 250 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~ 250 (284)
.+|++|+|||+++.+++ ..|...+.+ ...|.|+|+||+|+. . .+....+...+++.++++++++||++|
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~vi~~SA~~g 148 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVL----D--GQGKKINVDKLSYHLGVPVVATSALKQ 148 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHH----H--HTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhC----C--cCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence 69999999999886543 456666655 244558999999962 1 111123467788889999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 023316 251 INVNKIFKFIMAKLF 265 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~ 265 (284)
.|++++|+++++.+.
T Consensus 149 ~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 149 TGVDQVVKKAAHTTT 163 (272)
T ss_dssp BSHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988653
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=8.7e-24 Score=197.76 Aligned_cols=254 Identities=13% Similarity=0.118 Sum_probs=157.4
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCcc------cccccccCCCCCCCCCcccc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 77 (284)
+..++..++..++..++.+|.+.++.....-+.+.++.....++++-++..... .+..+.....-..|+.....
T Consensus 92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTT
T ss_pred HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccc
Confidence 455666677778888899999998888777777777765555565555433211 11111111000001000000
Q ss_pred ccccc-ccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEe
Q 023316 78 EAGLV-ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWD 154 (284)
Q Consensus 78 ~~~~~-~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~D 154 (284)
....- ..................+||+++|++|||||||+++|++.+.. ..+++++.+.....+.+++. .+.+||
T Consensus 172 v~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~D 249 (456)
T 4dcu_A 172 LGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVD 249 (456)
T ss_dssp HHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETT
T ss_pred hHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEE
Confidence 00000 00000000001122334789999999999999999999987643 67778888888788888886 577999
Q ss_pred CCC----------CcCCcccccc-cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 155 VGG----------DSRSFDHVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 155 t~G----------~e~~~~~~~~-~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
|+| +++|..+... +++.+|++|+|+|+++..+.. ...|+..+.. ...+.|+|+||+|+. +.
T Consensus 250 T~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~----~~- 321 (456)
T 4dcu_A 250 TAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAV----DK- 321 (456)
T ss_dssp GGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGS----CC-
T ss_pred CCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcC----CC-
Confidence 999 6667666554 789999999999998865533 2456665554 234558999999963 21
Q ss_pred ccchHHHHHHHHHHc-----CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 224 QWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 224 ~~~~~~~~~~~a~~~-----~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.....+++.+.++.. +++++++||++|.|++++|+++.+.+.+.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 322 DESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 122344555555544 58999999999999999999999877544
No 124
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=8.4e-24 Score=185.19 Aligned_cols=155 Identities=14% Similarity=0.048 Sum_probs=118.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc----------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~----------~~~~ 168 (284)
.+||+++|.+|||||||+|+|++..+. ...++++.+.....+..++.. +.+|||+|+..+... ...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHHH
Confidence 689999999999999999999998866 667777777777777777654 668999999987732 2233
Q ss_pred c--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 169 C--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 169 ~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
+ +.+|++|+|+|+++.++...+..|+. +. ..|.|+|+||+|+. + ..........+++.++++++++|
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~~i~~S 149 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIA----E--KQNIRIEIDALSARLGCPVIPLV 149 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHH----H--HTTEEECHHHHHHHHTSCEEECC
T ss_pred HhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccch----h--hhhHHHHHHHHHHhcCCCEEEEE
Confidence 3 79999999999998665544444443 33 44568999999952 1 11112235677888899999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCC
Q 023316 247 ATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~ 267 (284)
|++|.|++++|+++.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998876544
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.89 E-value=2.4e-22 Score=178.19 Aligned_cols=163 Identities=16% Similarity=0.118 Sum_probs=113.5
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC--------cccccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPI 167 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~--------~~~~~~ 167 (284)
....+|+++|.+|||||||+|+|++.++. ...+.++.+.....+..+ ...+.+|||+|+++. ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 34678999999999999999999999876 334433333332333333 356889999999873 345566
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~-~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
+++++|++++|||++++.+..+ .|+ +.+.+.....|.|+|+||+|+. ..... ..+.+..+ ....+++++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~----~~~~~-~~~~~~~~--~~~~~~~~iS 153 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAA----KYPEE-AMKAYHEL--LPEAEPRMLS 153 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGC----SSHHH-HHHHHHHT--STTSEEEECC
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccC----CchHH-HHHHHHHh--cCcCcEEEEe
Confidence 8899999999999998766543 444 5565544345558999999962 11110 12222222 1134789999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCcccc
Q 023316 247 ATHNINVNKIFKFIMAKLFNLPWTV 271 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~~~~~ 271 (284)
|++|.|++++|+.+...+.+.++..
T Consensus 154 A~~g~gv~~l~~~l~~~l~~~~~~y 178 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPEGPFFY 178 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCBCCCSS
T ss_pred CCCCCCHHHHHHHHHHhcccCCCCC
Confidence 9999999999999998887666544
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=1.3e-22 Score=177.23 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=122.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc------cccccc--c
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--K 170 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~------~~~~~~--~ 170 (284)
.+||+++|++|||||||+++|++..+. ...++++.+.....+.+++.. +.+|||+|+..+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 589999999999999999999998876 667788888887788887765 77999999998876 566666 7
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 250 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~ 250 (284)
++|++++|+|+++.+ ....|...+.... ..|.++|+||+|+. + ..........+++.++++++++||++|
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~----~--~~~~~~~~~~l~~~lg~~~~~~Sa~~g 150 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDLL----K--KKGAKIDIKKMRKELGVPVIPTNAKKG 150 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHHH----H--HHTCCCCHHHHHHHHSSCEEECBGGGT
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhcC----c--ccccHHHHHHHHHHcCCcEEEEEeCCC
Confidence 899999999998854 3334444454432 24558999999962 1 111112367788889999999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023316 251 INVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~~~ 268 (284)
.|++++|+.+...+.+..
T Consensus 151 ~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 151 EGVEELKRMIALMAEGKV 168 (271)
T ss_dssp BTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999876543
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.88 E-value=3.1e-22 Score=187.52 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=97.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~ 169 (284)
.+||+++|.+|||||||+|+|++.+.. ..+++++.++....+.++|. .+.+|||+|++++...+ ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 589999999999999999999998643 66777888888888888885 57899999998876443 3478
Q ss_pred cCCcEEEEEEeCCChhhHHHH---HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 170 KDAVAILFMFDLTSRCTLNSI---VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~---~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
+.+|++|+|||++++.+++.+ ..|++.+ .+.|.|+|+||+|+. .... . ..+.+++....+++++|
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l----~~~piIvV~NK~Dl~----~~~~--~--~~~~l~~~~~~~~i~vS 378 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH----PAAKFLTVANKLDRA----ANAD--A--LIRAIADGTGTEVIGIS 378 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC----TTSEEEEEEECTTSC----TTTH--H--HHHHHHHHHTSCEEECB
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc----CCCCEEEEEECcCCC----Cccc--h--hHHHHHhcCCCceEEEE
Confidence 999999999999999887643 3444443 244558999999962 2211 1 12344444347899999
Q ss_pred CCCCcCHHHHHHHHHHHHh
Q 023316 247 ATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~ 265 (284)
|++|.|++++|+++.+.+.
T Consensus 379 Aktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 379 ALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTTBSHHHHHHHHTHHHH
T ss_pred ECCCCCHHHHHHHHHHHHh
Confidence 9999999999999999886
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.5e-23 Score=176.42 Aligned_cols=146 Identities=14% Similarity=0.138 Sum_probs=104.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC--
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 171 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~-- 171 (284)
...+||+++|++|||||||+++|.+..+.. ..++++.++ ..+.+.+|||+|++.++..+..|++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 346899999999999999999999988653 233444433 34568899999999999988888887
Q ss_pred --CcEEEEEEeCC-ChhhHHHHHHHHHHHHhH----C-CCCceEEEEeCCCCCCCCCCC-cccchHHHHHHHHHHcCCcE
Q 023316 172 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW----N-QTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 172 --ad~iilv~d~~-~~~s~~~~~~~~~~l~~~----~-~~~~~Ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~a~~~~~~~ 242 (284)
+|++|+|||++ ++++|..+..|+.++... . ...|.++|+||+|+....... ......+++..++...++++
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 889999999998888664 2 344457999999973221100 00111456777888888899
Q ss_pred EEEcCCCCcC
Q 023316 243 FFSSATHNIN 252 (284)
Q Consensus 243 ~~~Sa~~~~~ 252 (284)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999998876
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.88 E-value=7.7e-23 Score=172.60 Aligned_cols=162 Identities=14% Similarity=0.043 Sum_probs=106.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCC-C--CcccccceeeeeEEEEEC-CeEEEEEEEeCCCCc----------CCccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQ-E--RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDH 164 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~e----------~~~~~ 164 (284)
..+||+|+|.+|||||||+++|++..+ . ...+.+..+. ....+. .....+.+|||+|.. .+..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI--NYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE--EEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce--EEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 368999999999999999999999873 2 3333333332 233333 333567899999953 34555
Q ss_pred ccccccC---CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----
Q 023316 165 VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---- 237 (284)
Q Consensus 165 ~~~~~~~---ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~---- 237 (284)
...|++. +|++++|+|+++..+.. ...|+..+.. ...|.|+|+||+|+. +........++..+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~---~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKL---TRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGS---CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccC---ChhhHHHHHHHHHHHHHhhhhc
Confidence 5566665 78899999998865532 2355555554 234558999999962 211111112222333222
Q ss_pred ---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 238 ---MKATLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 238 ---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
.+++++++||++|.|++++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4678999999999999999999999886543
No 130
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=9.2e-22 Score=183.18 Aligned_cols=150 Identities=19% Similarity=0.242 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC---------cccccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 169 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~---------~~~~~~~~ 169 (284)
.+|+++|.+|||||||+|+|++.+.. ...++++.+.....+.+++.. +++|||+|++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999999998754 667777778887888888865 679999998763 23456689
Q ss_pred cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHH-HHHHHHcCC-cEEEE
Q 023316 170 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAYAKAMKA-TLFFS 245 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~a~~~~~-~~~~~ 245 (284)
+++|++|+|+|+++..+..+ +..|+.. . ..|.|+|+||+|+ . .. ...+. .+++ ..++ +++++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~---~--~~p~ilv~NK~D~----~--~~--~~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK---S--TVDTILVANKAEN----L--RE--FEREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH---H--TCCEEEEEESCCS----H--HH--HHHHTHHHHG-GGSSCSCEEC
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH---c--CCCEEEEEeCCCC----c--cc--cHHHHHHHHH-hcCCCCEEEE
Confidence 99999999999988766543 3344433 1 4566899999995 1 11 11222 3444 4576 78999
Q ss_pred cCCCCcCHHHHHHHHHHHHhC
Q 023316 246 SATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 246 Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
||++|.|++++|+++...+.+
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eccCCCCHHHHHHHHHHhccc
Confidence 999999999999999998864
No 131
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.87 E-value=1.2e-22 Score=187.53 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=116.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------cc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------IA 168 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------~~ 168 (284)
...+||+++|+.|+|||||+++|++..+. ...++++.+...+.+.+.+.. .+.+|||+|++++..+.. .+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence 44789999999999999999999998874 555666677777777776652 678999999999876643 37
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
++.+|++|+|||++..+ ....|+..+.+. +.|.|+|+||+|+. .... .+..+++++.++++++++||+
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~----~~~~---~~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVL----GEKA---EELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTT----TCCC---THHHHHSSCCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCC----CccH---HHHHHHHHHHcCCCEEEEECC
Confidence 89999999999993332 345677777665 44568999999962 2211 155667777889999999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023316 249 HNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~~~ 267 (284)
+|.|++++|+++.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999988544
No 132
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=1.3e-21 Score=182.12 Aligned_cols=254 Identities=10% Similarity=0.106 Sum_probs=147.8
Q ss_pred hHHHHhhHHHHhhhhhheeeccccccchhHHHHHHHHHHHHHHhhhccCCCCccc--------ccccccCCCCCCCCCcc
Q 023316 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR--------YQKLTRRSSSESSPAPD 75 (284)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~--------~~~~~~~~~~~~~~~~~ 75 (284)
+..++..++..++..++.+|.+.++......+.+.++...-.++++-++...... +..+.....-..|+...
T Consensus 71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHN 150 (439)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCC
Confidence 5566777788888889999999887776666666676654455555554332111 11111100000011111
Q ss_pred ccccccc-cccc--ccCC-C-CCCCCCceeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEE
Q 023316 76 TMEAGLV-ELSR--TFSS-G-YDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARI 148 (284)
Q Consensus 76 ~~~~~~~-~~~~--~~~~-~-~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~ 148 (284)
......- .... +... . .........+||+++|++|||||||+|++++.... ..+++++.+.....+.++|..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~- 229 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK- 229 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE-
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE-
Confidence 0000000 0000 0000 0 00001234689999999999999999999998764 667777777777888888875
Q ss_pred EEEEEeCCCCcCCcccc------------cccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 149 AFSIWDVGGDSRSFDHV------------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~------------~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+.+|||+|+.++.... ..+++.+|++++|+|+++..++++. .+...+.. ...+.|+|+||+|+.
T Consensus 230 -~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 230 -YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLV 305 (439)
T ss_dssp -EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS
T ss_pred -EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCC
Confidence 6799999986543321 2356789999999999987776652 23333332 234558999999962
Q ss_pred CCCCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 217 VRLPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 217 ~~~~~~~~~~~~~~~----~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+.......+.. +.++...+++++++||++|.|++++|+.+...+.+
T Consensus 306 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 306 ----VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp ----TTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ----CchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 21111111111 22333346799999999999999999999887654
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=2.1e-20 Score=169.56 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=119.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc---------ccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 168 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~---------~~~~~ 168 (284)
..++|+++|.+|||||||+++|.+..+. ..++.++.+.....+..++ ..+.+|||+|...+.. ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 3579999999999999999999998764 4444333333333444444 5678999999866421 11134
Q ss_pred ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
...+|++|+|+|+++.. ++++...|+..+.......|.|+|+||+|+ ... . ..+++..+++..+++++++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl----~~~--~-~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV----ADE--E-NIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT----CCH--H-HHHHHHHHHHHTTCCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc----CCh--H-HHHHHHHHHHhcCCCeEEEe
Confidence 45799999999999887 788888999999876555566899999996 221 1 12456667778899999999
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023316 247 ATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~ 266 (284)
|++|+|++++|+++...+..
T Consensus 317 A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.85 E-value=2.4e-21 Score=181.65 Aligned_cols=151 Identities=15% Similarity=0.211 Sum_probs=117.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc-CCccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFDH--------VPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e-~~~~~--------~~~~ 168 (284)
.+||+++|.+|||||||+|+|++.++. ..+++++.++....+.+++.. +.+|||+|++ ++... ...+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999999998743 777888888888888888754 7799999998 65432 3457
Q ss_pred ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023316 169 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
++.+|++|+|||++++.++++.. +++.+ ...|.|+|+||+||.. . ...+++..++. .+++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~----~---~~~~~~~~~~~-~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVE----K---INEEEIKNKLG-TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCC----C---CCHHHHHHHHT-CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECccccc----c---cCHHHHHHHhc-CCCcEEEEECC
Confidence 88999999999999998887643 33433 2455689999999731 1 11233444432 45789999999
Q ss_pred CCcCHHHHHHHHHHHHh
Q 023316 249 HNINVNKIFKFIMAKLF 265 (284)
Q Consensus 249 ~~~~v~~lf~~l~~~i~ 265 (284)
+|.|++++|+++.+.+.
T Consensus 388 tg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQ 404 (482)
T ss_dssp GTCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998765
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=6.8e-20 Score=168.77 Aligned_cols=166 Identities=14% Similarity=0.109 Sum_probs=116.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCc--cc--cccee------------eeeEEEEE---CCeEEEEEEEeCCCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERS--LQ--MAGLN------------LINKTLMV---QGARIAFSIWDVGGD 158 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~--~~--t~~~~------------~~~~~~~~---~~~~~~l~l~Dt~G~ 158 (284)
...+||+++|++++|||||+++|++...... +. +.+.. ........ ......+.+|||+|+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 3478999999999999999999998543311 11 11100 00000000 122367899999999
Q ss_pred cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 238 (284)
Q Consensus 159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~ 238 (284)
++|......+++.+|++|+|+|+++..++.....|+..+..... .+.|+|+||+|+. +.+......++..++.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl~---~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDVV---SKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGGS---CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECcccc---chHHHHHHHHHHHHHHHhh
Confidence 99999888999999999999999998877777888877766543 3458999999962 2111111233444444332
Q ss_pred ---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 239 ---KATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 239 ---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++++++||++|.|++++|+++...+...
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCCC
Confidence 57899999999999999999999877543
No 136
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.83 E-value=1.2e-20 Score=176.14 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=108.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~--------~~~~ 169 (284)
.+||+++|.+|||||||+|+|++.++. ..+++++.++....+.++|.. +.+|||+|+..+.... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence 589999999999999999999987654 666777788877788888855 6799999987765433 3368
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 249 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~ 249 (284)
+.+|++|+|||++++.+... ..|++.+. ..|.|+|+||+|+. ...... ....++ .+.+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~----~~~~~~---~~~~~~--~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV----EKQLIT---SLEYPE--NITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS----CGGGST---TCCCCT--TCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC----cchhhH---HHHHhc--cCCcEEEEECCC
Confidence 89999999999999877655 55666653 24558999999962 211111 111111 357899999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023316 250 NINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~~~ 268 (284)
|.|++++|+++.+.+....
T Consensus 368 g~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TBSHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHhccC
Confidence 9999999999999886553
No 137
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=1.7e-20 Score=169.42 Aligned_cols=122 Identities=16% Similarity=0.186 Sum_probs=92.2
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceEEEEeCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPILIGTKF 213 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~ 213 (284)
..+.+++|||+||++|+.++..||++++++|+|||++ +.++|++...|++.+.... .+.|.||+|||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 7889999999999887642 344558999999
Q ss_pred CCCCC-C-----------CCCc----ccchHHHHHHHHHH----------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023316 214 DDFVR-L-----------PPDL----QWTIATQARAYAKA----------------MKATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 214 Dl~~~-~-----------~~~~----~~~~~~~~~~~a~~----------------~~~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
||..+ + ++.. .....+++..++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97321 0 0000 00124666666443 123468999999999999999999
Q ss_pred HHHhCC
Q 023316 262 AKLFNL 267 (284)
Q Consensus 262 ~~i~~~ 267 (284)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988643
No 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=1e-20 Score=170.81 Aligned_cols=126 Identities=19% Similarity=0.238 Sum_probs=97.8
Q ss_pred EEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH--CCCCceE
Q 023316 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW--NQTAIPI 207 (284)
Q Consensus 140 ~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~--~~~~~~I 207 (284)
.+.++ .+.+++|||+||+.++.+|..||++++++|+|||+++ ..++++...|++.+... ..+.|.|
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pii 264 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 264 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEE
Confidence 34444 4778999999999999999999999999999999999 56788888898888764 2344558
Q ss_pred EEEeCCCCCCC----------CCCCcccchHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 208 LIGTKFDDFVR----------LPPDLQWTIATQARAYAK-----------AMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 208 lv~nK~Dl~~~----------~~~~~~~~~~~~~~~~a~-----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
|+|||+||... +++....+..+++..+++ ..++.+++|||+++.||+++|+++...+.+
T Consensus 265 Lv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~ 344 (353)
T 1cip_A 265 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK 344 (353)
T ss_dssp EEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence 99999997311 000000133677888876 356789999999999999999999998864
Q ss_pred C
Q 023316 267 L 267 (284)
Q Consensus 267 ~ 267 (284)
.
T Consensus 345 ~ 345 (353)
T 1cip_A 345 N 345 (353)
T ss_dssp H
T ss_pred H
Confidence 3
No 139
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=5.2e-20 Score=159.43 Aligned_cols=163 Identities=13% Similarity=0.041 Sum_probs=110.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC-CCCc-ccc-cceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc--------
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-QERS-LQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP-------- 166 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-~~~~-~~t-~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~-------- 166 (284)
...+||+|+|.+|||||||+++|++.. +... .++ ++.+.....+..++. .+.||||+|+..+.....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999987 4433 333 555555556666765 477999999987643322
Q ss_pred ---ccccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCCCCceEEEEe-CCCCCCCCCCCcccchH-------HHHHHH
Q 023316 167 ---IACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGT-KFDDFVRLPPDLQWTIA-------TQARAY 234 (284)
Q Consensus 167 ---~~~~~ad~iilv~d~~~~~s~-~~~~~~~~~l~~~~~~~~~Ilv~n-K~Dl~~~~~~~~~~~~~-------~~~~~~ 234 (284)
.+++.+|++|+|+|+++.... ..+..|+.++.......|+|+|.| |+|+. .. .... +++..+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~----~~--~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN----GG--SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT----TC--CHHHHHHHCCCHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC----Cc--cHHHHHHhcchHHHHHH
Confidence 267899999999999862222 223344444322221346665555 99963 11 1111 345556
Q ss_pred HHHcCCcE-----EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 235 AKAMKATL-----FFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 235 a~~~~~~~-----~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
++.++..+ +++||+++.|++++|+++...+...+
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 77666433 67999999999999999999887644
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=1.7e-19 Score=159.84 Aligned_cols=163 Identities=15% Similarity=0.108 Sum_probs=114.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc---------CCcccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e---------~~~~~~~~ 167 (284)
...+|+++|++|||||||+|++++.++. ...+.+..+.....+..++ ..+.+|||+|++ .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4568999999999999999999998764 3333222222222333344 467899999998 34455667
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS 246 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~S 246 (284)
+++.+|++++|+|.++ +.....|+-+... ....|.|+++||+|+. .. +....+.+.++++.++. .++++|
T Consensus 85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~----~~-~~~~~~~l~~l~~~~~~~~~i~iS 155 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNV----QE-KADLLPHLQFLASQMNFLDIVPIS 155 (301)
T ss_dssp CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTC----CC-HHHHHHHHHHHHTTSCCSEEEECC
T ss_pred HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccC----cc-HHHHHHHHHHHHHhcCcCceEEEE
Confidence 8899999999999977 3333344433322 2245568999999962 11 22234556667776776 689999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCccccc
Q 023316 247 ATHNINVNKIFKFIMAKLFNLPWTVK 272 (284)
Q Consensus 247 a~~~~~v~~lf~~l~~~i~~~~~~~~ 272 (284)
|+++.|++++++.+...+...++...
T Consensus 156 A~~g~~v~~l~~~i~~~l~~~~~~~~ 181 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKHLPEATHHFP 181 (301)
T ss_dssp TTTTTTHHHHHHHHHTTCCBCCCSSC
T ss_pred CCCCCCHHHHHHHHHHhCCcCCCCCC
Confidence 99999999999999988776665443
No 141
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.82 E-value=4.5e-20 Score=164.59 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=95.8
Q ss_pred EEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceE
Q 023316 140 TLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPI 207 (284)
Q Consensus 140 ~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~I 207 (284)
.+.+++ +.+++|||+||++++.+|.+||++++++|+|||++ +.+++++...|++.+.... .+.|.|
T Consensus 161 ~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ii 238 (327)
T 3ohm_A 161 PFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 238 (327)
T ss_dssp EEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEE
T ss_pred EEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEE
Confidence 344443 77999999999999999999999999999999654 6778888888888876532 344558
Q ss_pred EEEeCCCCCCCC----------CCCcc-cchHHHHHHHH----------HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 208 LIGTKFDDFVRL----------PPDLQ-WTIATQARAYA----------KAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 208 lv~nK~Dl~~~~----------~~~~~-~~~~~~~~~~a----------~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
|+|||+||.... |+..- ....+++..+. +..++.+++|||+++.||+++|..+...|++
T Consensus 239 L~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~ 318 (327)
T 3ohm_A 239 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 318 (327)
T ss_dssp EEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHH
Confidence 999999963210 11000 23466777773 3456778899999999999999999999976
Q ss_pred Cc
Q 023316 267 LP 268 (284)
Q Consensus 267 ~~ 268 (284)
..
T Consensus 319 ~~ 320 (327)
T 3ohm_A 319 LN 320 (327)
T ss_dssp TT
T ss_pred Hh
Confidence 54
No 142
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.82 E-value=1.2e-19 Score=164.82 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=111.2
Q ss_pred eeE-EEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC---------Cccccccc
Q 023316 100 SLK-ISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 168 (284)
Q Consensus 100 ~~K-I~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~---------~~~~~~~~ 168 (284)
.++ |+++|.+|+|||||+|++.+..+. ..++.++.+.....+.++|. .+.+|||+|... |.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 999999999999999999998865 45555566777788888885 467999999733 22222 24
Q ss_pred ccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc---CCcE
Q 023316 169 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATL 242 (284)
Q Consensus 169 ~~~ad~iilv~d~~~~~--s~~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~---~~~~ 242 (284)
+..+|++++|+|++++. +++.+..|.+.+..... +.|.|+|+||+|+ .+.. .....+.+..+++.+ +.++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl---~~~~-~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK---INGD-LYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG---CCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC---CCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence 78999999999999887 66667777777766543 3445899999996 2221 111123444455555 3468
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 243 FFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++||+++.|++++++.+...+...
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHHHhccc
Confidence 8999999999999999998877543
No 143
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=9e-20 Score=171.44 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=111.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC-------CC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE-------QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIAC 169 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~-------~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~ 169 (284)
+..++|+++|..++|||||+++|.+.. +. +..+.++.+.....+.+++ ..+.+|||+|+++|......++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999999999876 22 2223344444444555666 4578999999999988888889
Q ss_pred cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023316 170 KDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL 242 (284)
Q Consensus 170 ~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~----~~~~ 242 (284)
..+|++|+|+|+++ +.+++.+. .+... ..|.|+|+||+|+. +++......++..++++.. ++++
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl~---~~~~~~~~~~~l~~~l~~~~~~~~~~i 165 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDNA---GTEEIKRTEMIMKSILQSTHNLKNSSI 165 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTSS---CHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCcc---cchhHHHHHHHHHHHHhhhcccccceE
Confidence 99999999999988 44444332 23222 34448999999962 2121222356667777665 5789
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHh
Q 023316 243 FFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 243 ~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
+++||++|.|+++++++|...+.
T Consensus 166 i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 166 IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999999998774
No 144
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=5.9e-21 Score=177.56 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=99.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCc--------CCccccccccc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACK 170 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e--------~~~~~~~~~~~ 170 (284)
.+|+++|.+|||||||+|+|++..+. ...+.++.+.....+.+++ ..+.+|||+|++ .+...+..+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN--YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS--SCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC--ceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999998775 3444444444444444444 458899999996 45566777899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023316 171 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH 249 (284)
Q Consensus 171 ~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~ 249 (284)
.+|++|+|+|+++..++.+ .|+..+.+. ...|.|+|+||+|+... .. +..++. ..++ +++++||++
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~~-~~~pvilv~NK~D~~~~----~~-----~~~~~~-~lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKILYR-TKKPVVLAVNKLDNTEM----RA-----NIYDFY-SLGFGEPYPISGTH 148 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHHTT-CCSCEEEEEECCCC--------------CCCSSG-GGSSCCCEECBTTT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHHHH-cCCCEEEEEECccCccc----hh-----hHHHHH-HcCCCCeEEEeCcC
Confidence 9999999999998877654 333333222 34555899999996311 00 111222 3455 789999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023316 250 NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 250 ~~~v~~lf~~l~~~i~~ 266 (284)
|.|++++|+++...+.+
T Consensus 149 g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TBTHHHHHHHHHHTGGG
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999988864
No 145
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=154.35 Aligned_cols=165 Identities=12% Similarity=0.051 Sum_probs=108.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECCeEEEEEEEeCCCCcC-----------Ccc
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SFD 163 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~-----------~~~ 163 (284)
...+||+|+|.+|||||||++++++..+. ...+ +++.+.....+.+++.. +.+|||+|... +..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHHHH
Confidence 34799999999999999999999998876 4444 45556666667777754 67999999543 334
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhH---CCCCceEEEEeCCCCCCCCCCCccc-chHHHHHHHHHHcC
Q 023316 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQW-TIATQARAYAKAMK 239 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~---~~~~~~Ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~a~~~~ 239 (284)
....+++++|++|+|+|+++.... ...|+..+.+. ....|.|+|+||+|+.....-+... ...+.++.+++..+
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 444566789999999999764431 12333333321 1123568999999963211000000 00246788888899
Q ss_pred CcEEEEcCCCC-----cCHHHHHHHHHHHHhC
Q 023316 240 ATLFFSSATHN-----INVNKIFKFIMAKLFN 266 (284)
Q Consensus 240 ~~~~~~Sa~~~-----~~v~~lf~~l~~~i~~ 266 (284)
..++.+++..+ .++.++|..+...+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877644 6899999998887754
No 146
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.81 E-value=2.8e-20 Score=162.66 Aligned_cols=160 Identities=13% Similarity=0.140 Sum_probs=96.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC-------c
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F 162 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~-------~ 162 (284)
..+||+|+|.+|+|||||+|++++.... .. .+|++.+.....+..+|..+.+.+|||+|.... .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3799999999999999999998776644 33 457777777666666777789999999998432 2
Q ss_pred ccc-------ccccc-------------CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCC
Q 023316 163 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 222 (284)
Q Consensus 163 ~~~-------~~~~~-------------~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~ 222 (284)
.+. ..|+. .+|+++++++.+.......-..|++.+.. ..|.|+|+||+|+ +...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~---~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT---LTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG---SCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC---CCHH
Confidence 222 22222 37899999977653222222345555543 4455899999996 2222
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 223 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 223 ~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
......+...+.....+++++.+||.+++|++++++++...+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 111123455666677899999999999999999999988754
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.80 E-value=4.3e-19 Score=163.32 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=139.0
Q ss_pred HHHHhhhccCCCCcccccccccCCCCCCCCCcccccccccccccccCCCCCCCCCceeeEEEEEcCCCCChHHHHHHHhc
Q 023316 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 43 ~~~~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.++++++.+|.+|.++.+..+.+... |.....|........... -...-.|+|+|.+|+|||||++++.+
T Consensus 110 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g~~~~i~le-----lk~g~~VgLVG~~gAGKSTLL~~Lsg 179 (416)
T 1udx_A 110 GQTVLVARGGAGGRGNMHFVSPTRQA-----PRFAEAGEEGEKRRLRLE-----LMLIADVGLVGYPNAGKSSLLAAMTR 179 (416)
T ss_dssp TCEEEEECCCCCCCCGGGGCCSSCSS-----CCEEECCCCCCEEEEEEE-----ECCSCSEEEECCGGGCHHHHHHHHCS
T ss_pred CceEEEecCCCCCcccceeecccccC-----cccccCCCCceEeeeeeE-----EcCCCEEEEECCCCCcHHHHHHHHHc
Confidence 46789999999888876654444332 222222211100000000 00012588999999999999999998
Q ss_pred CCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC----Ccccccccc---cCCcEEEEEEeCCChhhHHHHHHHH
Q 023316 123 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRCTLNSIVGWY 194 (284)
Q Consensus 123 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~----~~~~~~~~~---~~ad~iilv~d~~~~~s~~~~~~~~ 194 (284)
.... ..++.++.......+.+++ ...+.+||++|... +..+...|+ ..++.+++++|++ ..+++++..|.
T Consensus 180 ~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~ 257 (416)
T 1udx_A 180 AHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLR 257 (416)
T ss_dssp SCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHH
T ss_pred CCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHH
Confidence 8654 4444333333334455554 24577999999854 233433343 4799999999998 77888888898
Q ss_pred HHHHhHCC---CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 195 SEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 195 ~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
+++..+.. ..|.|+|+||+|+ .. . ...++..+.++..+++++++||++++|++++|+++...+...++
T Consensus 258 ~el~~la~aL~~~P~ILVlNKlDl----~~--~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 258 KEVGAYDPALLRRPSLVALNKVDL----LE--E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHCHHHHHSCEEEEEECCTT----SC--H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhHHhhcCCEEEEEECCCh----hh--H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 88877653 4566899999995 22 1 23445556666678899999999999999999999999987654
No 148
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.80 E-value=7.7e-19 Score=161.94 Aligned_cols=161 Identities=15% Similarity=0.114 Sum_probs=105.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC---CC-Cccc--ccceeeeeEEEEE-------------C--C----eEEEEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 153 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l~ 153 (284)
..++|+++|+.++|||||+++|.+.. +. ...+ |+...+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 36899999999999999999998543 32 2223 4544444433322 1 2 13679999
Q ss_pred eCCCCcCCcccccccccCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHH
Q 023316 154 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT 229 (284)
Q Consensus 154 Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~ 229 (284)
||+|+++|.......+..+|++|+|+|+++ +.+++.+..| ... ...+.|+++||+|+. +........+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l-~~~~iivv~NK~Dl~---~~~~~~~~~~ 158 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL-GIDKIIIVQNKIDLV---DEKQAEENYE 158 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT-TCCCEEEEEECTTSS---CTTTTTTHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc-CCCeEEEEEEccCCC---CHHHHHHHHH
Confidence 999999988777777889999999999985 4455444333 221 223457999999973 2222123356
Q ss_pred HHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 230 QARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 230 ~~~~~a~~~---~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++++++.. +++++++||++|+|++++|++|...+...
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 667777653 67899999999999999999999877543
No 149
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.4e-20 Score=170.89 Aligned_cols=160 Identities=8% Similarity=0.130 Sum_probs=94.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC-CCCcc---------cccceeeeeEEEEECCeEEEEEEEeCCCC-------cCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE-QERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 161 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~-~~~~~---------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------e~~ 161 (284)
..++|+|+|++|+|||||++++.+.. +...+ +|++.++....+..++..+.+.+|||+|+ +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 46899999999999999999987654 32221 35555555555555677788999999999 777
Q ss_pred ccccc-------ccccCCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 162 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 162 ~~~~~-------~~~~~ad~i-----------ilv~d~~~-~~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
..+.. .|++.++++ +++|++++ ..++..+. .|+..+ ....|+|+|+||+|+. .
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~----~ 188 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTL----T 188 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSS----C
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCC----C
Confidence 77776 666554443 47777765 56666655 565554 3344558999999962 2
Q ss_pred Ccccc-hHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 222 DLQWT-IATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 222 ~~~~~-~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
..... ..+++..+++.++++++++||+++.| ++.|..+...+..
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 11111 12577788888899999999999999 8889888887754
No 150
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.6e-20 Score=150.98 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=84.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCC----cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccC---
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD--- 171 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~--- 171 (284)
..+||+++|++|||||||+++|.+..+.. ..++++.++ ..+.+.+|||+|++.+...+..+++.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 46899999999999999999999987653 122333322 33567899999999998888888876
Q ss_pred -CcEEEEEEeCC-ChhhHHHHHHHHHHHHhHC-----CCCceEEEEeCCCC
Q 023316 172 -AVAILFMFDLT-SRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDD 215 (284)
Q Consensus 172 -ad~iilv~d~~-~~~s~~~~~~~~~~l~~~~-----~~~~~Ilv~nK~Dl 215 (284)
+|++|+|||++ +.+++..+..|+..+.... ...|.++|+||+|+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 89999999999 8999999999988876542 24455799999997
No 151
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.80 E-value=5.6e-19 Score=152.19 Aligned_cols=163 Identities=10% Similarity=0.041 Sum_probs=104.6
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-Ccccc--cceeeeeEEEEECCeEEEEEEEeCCCC--------cCCcccccc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQM--AGLNLINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPI 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~l~Dt~G~--------e~~~~~~~~ 167 (284)
..+||+|+|.+|||||||+|++++..+. ...++ ++.+.....+..++. .+.+|||+|. +.+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC--HVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE--EEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc--EEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 3799999999999999999999998876 33333 333334445556664 4779999997 333333333
Q ss_pred cc----cCCcEEEEEEeCCChhhH-HHHHHHHHHHHhHCC-CCceEEEEeCCCCCCCCCCCcccch----HHHHHHHHHH
Q 023316 168 AC----KDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKA 237 (284)
Q Consensus 168 ~~----~~ad~iilv~d~~~~~s~-~~~~~~~~~l~~~~~-~~~~Ilv~nK~Dl~~~~~~~~~~~~----~~~~~~~a~~ 237 (284)
++ +.+|++|+|+|+++.... ..+..|+.++..... ..|.||++||+||.. ....... .+..+.+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHHH
Confidence 33 899999999999853211 122233333321111 234479999999621 1111111 1456788888
Q ss_pred cCCcEEEEcCCC-----CcCHHHHHHHHHHHHhC
Q 023316 238 MKATLFFSSATH-----NINVNKIFKFIMAKLFN 266 (284)
Q Consensus 238 ~~~~~~~~Sa~~-----~~~v~~lf~~l~~~i~~ 266 (284)
.+..++.+++.. +.||.++++.+...+.+
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 898888766654 58999999999888864
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.79 E-value=1.4e-20 Score=178.05 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=115.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEE-CCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
..+|+++|++++|||||+++|.+..+. ...++++.++....+.. ++. .+.+|||+|++.|..++..+++.+|++|+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 578999999999999999999988776 55556666665555544 333 57799999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHH---HHHc--CCcEEEEcCCCCcC
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM--KATLFFSSATHNIN 252 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~---a~~~--~~~~~~~Sa~~~~~ 252 (284)
|+|+++....+....| ..+.. ...|+|+++||+|+...-+. ...++...+ +..+ .++++++||++|.|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~----~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPE----KVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCC----SSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchH----HHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999987766554443 22322 23455899999997322111 111222221 1222 25789999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023316 253 VNKIFKFIMAKLFNL 267 (284)
Q Consensus 253 v~~lf~~l~~~i~~~ 267 (284)
++++|+++...+...
T Consensus 155 I~eLle~I~~l~~~~ 169 (537)
T 3izy_P 155 MMALAEATIALAEML 169 (537)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHhhhcc
Confidence 999999999877533
No 153
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=1e-18 Score=167.59 Aligned_cols=158 Identities=11% Similarity=0.129 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeeeEEEEE-----CCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|+.++|||||+++|+... .. ... .+.|.++....+.+ ++..+.+.+|||+|+++
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 5789999999999999999998632 11 111 12344443333332 56678999999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 240 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (284)
|......+++.+|++|+|+|+++..+++....|...+.. +.|+|+++||+|+. ... ..+...++.+.+++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~----~a~---~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLP----AAD---PERVAEEIEDIVGI 153 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcc----ccc---HHHHHHHHHHHhCC
Confidence 999999999999999999999998888888888776542 34558999999962 221 23344556666676
Q ss_pred ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 241 ---TLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 241 ---~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++++||++|.|++++|+++...+...
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 489999999999999999999887654
No 154
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=1.3e-18 Score=161.90 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=105.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--------------------------------CcccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~ 145 (284)
...++|+++|.+++|||||+++|++..-. ...+.++.+.....+..++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 34789999999999999999999654211 0112344454444454444
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---LN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s---~~---~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~ 218 (284)
..+.+|||+|+++|......+++.+|++|+|+|+++... |+ .....+..+.. ...+ .|+++||+|+...
T Consensus 95 --~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 --KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred --eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 468899999999999888889999999999999988642 21 11122222222 2345 4799999996210
Q ss_pred -CCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023316 219 -LPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 219 -~~~~~~~~~~~~~~~~a~~~~------~~~~~~Sa~~~~~v~~lf~ 258 (284)
..+.......++...+++..+ ++++++||++|.|+.++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 011112223555666776665 4699999999999999655
No 155
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=4.6e-19 Score=158.63 Aligned_cols=121 Identities=18% Similarity=0.265 Sum_probs=92.5
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhHC--CCCceEEEEeCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKWN--QTAIPILIGTKF 213 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~----------~~~s~~~~~~~~~~l~~~~--~~~~~Ilv~nK~ 213 (284)
..+.+++|||+||++++.+|..||++++++|+|||++ +.+++.+...|+..+.... .+.|.||+|||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3477999999999999999999999999999999998 7888998888888876542 344557999999
Q ss_pred CCCCC----------CCCCcccchHHHHHHHHHH-c--------------------------CCcEEEEcCCCCcCHHHH
Q 023316 214 DDFVR----------LPPDLQWTIATQARAYAKA-M--------------------------KATLFFSSATHNINVNKI 256 (284)
Q Consensus 214 Dl~~~----------~~~~~~~~~~~~~~~~a~~-~--------------------------~~~~~~~Sa~~~~~v~~l 256 (284)
||... +++.......+++.+|+.. + ++.+++|||+++.||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 96321 1111111124555554432 2 366788999999999999
Q ss_pred HHHHHHHHhC
Q 023316 257 FKFIMAKLFN 266 (284)
Q Consensus 257 f~~l~~~i~~ 266 (284)
|..+...|++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 156
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=2.5e-18 Score=158.58 Aligned_cols=162 Identities=13% Similarity=0.127 Sum_probs=111.1
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC---CCC-ccc--ccceeeeeEEEEE-------------C--C----eEEEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE---QER-SLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSI 152 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~---~~~-~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~l 152 (284)
...++|+++|+.++|||||+++|.+.. +.. ..+ |+...+....+.. + + ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 457999999999999999999998543 222 223 4444444333321 1 1 1367899
Q ss_pred EeCCCCcCCcccccccccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316 153 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 228 (284)
Q Consensus 153 ~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~----~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~ 228 (284)
|||+|+++|.......+..+|++|+|+|+++. .+++.+..| .... ..+.|+++||+|+. +........
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~-~~~iivviNK~Dl~---~~~~~~~~~ 159 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG-QKNIIIAQNKIELV---DKEKALENY 159 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT-CCCEEEEEECGGGS---CHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC-CCcEEEEEECccCC---CHHHHHHHH
Confidence 99999999887777778899999999999854 444444333 2222 22447899999962 111111224
Q ss_pred HHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 229 TQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 229 ~~~~~~a~~---~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
++++++++. .+++++++||++|.|++++|++|...+...
T Consensus 160 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 160 RQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 556666654 367999999999999999999999877543
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.78 E-value=4.6e-20 Score=171.46 Aligned_cols=157 Identities=13% Similarity=0.114 Sum_probs=106.3
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC--CCCCc------------------------------ccccceeeeeEEEEECCe
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGN--EQERS------------------------------LQMAGLNLINKTLMVQGA 146 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~ 146 (284)
..+||+++|+.++|||||+++|++. .+... ...++.+.....+ +..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~--~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRF--ETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEE--ECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEE--ecC
Confidence 4689999999999999999999875 22210 1122222222223 333
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC-----CCCc-eEEEEeCCCCCCC-C
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-----QTAI-PILIGTKFDDFVR-L 219 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~-----~~~~-~Ilv~nK~Dl~~~-~ 219 (284)
...+.+|||+|+++|......+++.+|++|+|+|+++ .+|++...|..+.+++. ...+ .|+++||+|+.+. .
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 4568899999999999888889999999999999998 77886655443333221 1333 4799999997311 0
Q ss_pred CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHHH
Q 023316 220 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf~ 258 (284)
.++......++++.+++.++ ++++++||++|.|+.+++.
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 01111233667788888776 6799999999999986543
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=3.9e-19 Score=167.35 Aligned_cols=156 Identities=14% Similarity=0.075 Sum_probs=98.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--C----------------------------cccccceeeeeEEEEECCeEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--R----------------------------SLQMAGLNLINKTLMVQGARI 148 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~~ 148 (284)
..+||+++|++++|||||+++|++.... . .....|.++......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 4799999999999999999999765211 0 000113333333344444456
Q ss_pred EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHH-----HHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-----VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~-----~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
.+.||||+|+++|......+++.+|++|+|+|+++.+++..+ ..+...+.......+.|+|+||+|+.+. .+..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-~~~~ 190 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQR 190 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT-CHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc-hHHH
Confidence 788999999999999999999999999999999987654332 1122222222222345799999996210 0011
Q ss_pred ccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023316 224 QWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 255 (284)
Q Consensus 224 ~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~ 255 (284)
.....+++..+.+..+ ++++++||++|.|+++
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 1112344455555443 5789999999999875
No 159
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=5.9e-18 Score=162.07 Aligned_cols=158 Identities=13% Similarity=0.203 Sum_probs=114.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC--CC---------Ccc---cccceeeee--EEEEE---CCeEEEEEEEeCCCCcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE--QE---------RSL---QMAGLNLIN--KTLMV---QGARIAFSIWDVGGDSR 160 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~--~~---------~~~---~t~~~~~~~--~~~~~---~~~~~~l~l~Dt~G~e~ 160 (284)
..+|+++|+.++|||||+++|+... +. ... ...|.++.. ..+.+ ++..+.+.+|||+|+++
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 5799999999999999999997631 11 000 012233222 22222 56678999999999999
Q ss_pred CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023316 161 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 240 (284)
Q Consensus 161 ~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~ 240 (284)
|......+++.+|++|+|+|+++..+++....|...+. ...|.|+++||+|+. ... ..+...++.+.+++
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~----~a~---~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLP----SAD---VDRVKKQIEEVLGL 155 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTST----TCC---HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCcc----ccC---HHHHHHHHHHhhCC
Confidence 99888889999999999999999988888888876653 234558999999962 221 23344556666676
Q ss_pred ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 241 ---TLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 241 ---~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+++++||++|.|++++|+++++.+...
T Consensus 156 ~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 156 DPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 489999999999999999999888654
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.77 E-value=8.1e-19 Score=161.67 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=115.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--------CCCCc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
...+||+++|++++|||||+++|++. .+... ..+.|.++....+.++.....+.+|||+|+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34799999999999999999999873 22111 012344444444445444466889999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 239 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~ 239 (284)
......+++.+|++|+|+|+++....+ ...|+..+... ..| .|+++||+|+. .+.. .....++.+++++.++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMV---DDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECcccc---CcHHHHHHHHHHHHHHHHHhc
Confidence 888888999999999999999876543 35566655543 334 46899999962 1111 1122456777777776
Q ss_pred -----CcEEEEcCCCCcC------------------HHHHHHHHHHHHh
Q 023316 240 -----ATLFFSSATHNIN------------------VNKIFKFIMAKLF 265 (284)
Q Consensus 240 -----~~~~~~Sa~~~~~------------------v~~lf~~l~~~i~ 265 (284)
++++++||++|.| +.++++.+...+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6899999999988 7788888777664
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=9.9e-19 Score=145.91 Aligned_cols=159 Identities=13% Similarity=0.145 Sum_probs=99.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC----------ccccccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----------FDHVPIA 168 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~----------~~~~~~~ 168 (284)
..+|+++|++|||||||++++++..+. ...++.|.......+.+++ .+.+|||+|.... ......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 579999999999999999999988754 3334556554444444444 3679999998532 2222334
Q ss_pred c---cCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023316 169 C---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT 241 (284)
Q Consensus 169 ~---~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~ 241 (284)
+ ..++++++++|+++..++.+ +..|+.. ...+.++++||+|+ ++...+......++.++...+ +.
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~---~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC---CCchhHHHHHHHHHHHHHhcCCCCc
Confidence 4 57899999999998766543 3344432 13344788999995 322111111345666666554 46
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023316 242 LFFSSATHNINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 242 ~~~~Sa~~~~~v~~lf~~l~~~i~~~~~ 269 (284)
++++||+++.|++++++.+.+.+.+.+.
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 7889999999999999999888765443
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.76 E-value=1.3e-18 Score=161.60 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=104.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC---Cc---------c-cccc-------------------eeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE---RS---------L-QMAG-------------------LNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~---~~---------~-~t~~-------------------~~~~~~~~~~~~ 145 (284)
...+||+++|+.++|||||+++|+++... .. . .+++ .+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 44689999999999999999999865411 10 1 1211 111111222233
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcc
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~ 224 (284)
....+.+|||+|+++|......+++.+|++|+|+|+++....+ ...|+..+... ..+ .|+|+||+|+. +....
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~--~~~~iIvviNK~Dl~---~~~~~ 175 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL--GIKHIVVAINKMDLN---GFDER 175 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT--TCCEEEEEEECTTTT---TSCHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCeEEEEEEcCcCC---cccHH
Confidence 3456889999999999888888899999999999999865433 34455444432 233 47899999962 21111
Q ss_pred --cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023316 225 --WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 257 (284)
Q Consensus 225 --~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~lf 257 (284)
....++...+++.++ ++++++||++|.|++++|
T Consensus 176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 123566778888887 689999999999999853
No 163
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=1.7e-19 Score=168.60 Aligned_cols=154 Identities=15% Similarity=0.176 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCC--------CcCCcccccccccC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIACKD 171 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G--------~e~~~~~~~~~~~~ 171 (284)
..+|+|+|.+|||||||+|+|++.++.....+.|.+.......+......+.+|||+| ++++......+++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 5699999999999999999999987752223344444444444444445688999999 56667778888999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN 250 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~Sa~~~ 250 (284)
+|++|+|+|..+..+.. ..|+..+.+. ...|.|+|+||+|+. +. .....++. ..+. ..+++||++|
T Consensus 103 ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~----~~-----~~~~~e~~-~lg~~~~~~iSA~~g 169 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNT----EM-----RANIYDFY-SLGFGEPYPISGTHG 169 (456)
T ss_dssp CSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC------------------CCSG-GGSSSSEEECCTTTC
T ss_pred CCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccch----hh-----hhhHHHHH-HcCCCceEEeecccc
Confidence 99999999987654433 3344333332 345558999999962 11 01111111 2233 5679999999
Q ss_pred cCHHHHHHHHHHHHhC
Q 023316 251 INVNKIFKFIMAKLFN 266 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~~ 266 (284)
.|+.++|+.+...+..
T Consensus 170 ~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TTHHHHHHHHHTTGGG
T ss_pred cchHHHHHHHHhhccc
Confidence 9999999999887643
No 164
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.76 E-value=1.4e-18 Score=159.60 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCC-------CCCc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNE-------QERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 164 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~-------~~~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~ 164 (284)
.+||+++|+.++|||||+++|++.. +... ....|.++....+.+......+.+|||+|+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 6899999999999999999998741 1100 001233332233334444456889999999999888
Q ss_pred ccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCcc-cchHHHHHHHHHHcC---
Q 023316 165 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK--- 239 (284)
Q Consensus 165 ~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a~~~~--- 239 (284)
...+++.+|++|+|+|+++....+....| ..+... ..| .|+++||+|+. ..... ....++.+++++.++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV---QDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC---SCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC---CCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999986654444434 334332 334 36899999962 11111 123466777888776
Q ss_pred --CcEEEEcCCCCcC----------HHHHHHHHHHHHhC
Q 023316 240 --ATLFFSSATHNIN----------VNKIFKFIMAKLFN 266 (284)
Q Consensus 240 --~~~~~~Sa~~~~~----------v~~lf~~l~~~i~~ 266 (284)
++++++||++|.| +.++|+.+...+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999775 89999998887653
No 165
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.76 E-value=3.8e-19 Score=166.64 Aligned_cols=158 Identities=11% Similarity=0.029 Sum_probs=92.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC-------------------------c-----ccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER-------------------------S-----LQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~-------------------------~-----~~t~~~~~~~~~~~~~~ 145 (284)
...+||+++|+.++|||||+++|+.. .+.. . ...++.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 44689999999999999999999742 1110 0 01112222223344444
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhHC-CCCc-eEEEEeCCCCCCCC-
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKWN-QTAI-PILIGTKFDDFVRL- 219 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~~~~l~~~~-~~~~-~Ilv~nK~Dl~~~~- 219 (284)
..+.||||+|+++|......+++.+|++|+|+|+++.. +|+....|.+.+.... ...| +|+++||+|+...-
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 56789999999999988888999999999999999863 4433233333332221 2334 47999999963110
Q ss_pred CCCcccchHHHHHHHHHHc-C------CcEEEEcCCCCcCHHHHH
Q 023316 220 PPDLQWTIATQARAYAKAM-K------ATLFFSSATHNINVNKIF 257 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~-~------~~~~~~Sa~~~~~v~~lf 257 (284)
+++....+.++...+++.. + ++++++||++|.|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0111123355677777766 3 569999999999998865
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.76 E-value=4.6e-18 Score=163.11 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=105.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCCCcc-----cccceeeeeEEE------------EECCeEEEEEEEeCCCCcCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-----QMAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~-----~t~~~~~~~~~~------------~~~~~~~~l~l~Dt~G~e~~ 161 (284)
...+|+++|++++|||||+++|.+..+.... +++|..+..... .++.....+.+|||+|++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4579999999999999999999886554222 233433321110 00001124889999999999
Q ss_pred cccccccccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc----------c-cch
Q 023316 162 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------Q-WTI 227 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~---~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~----------~-~~~ 227 (284)
..++..+++.+|++|+|||+++ +.+++.+.. +.. ...|.|+++||+|+........ + ...
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 9999999999999999999999 666655442 222 2345589999999743221100 0 000
Q ss_pred HH-------HHHHHHHHcC---------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 228 AT-------QARAYAKAMK---------------ATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 228 ~~-------~~~~~a~~~~---------------~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
.+ +......+.+ ++++++||++|.|++++++++...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 01 1111111222 37899999999999999999988664
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=6.4e-18 Score=160.20 Aligned_cols=111 Identities=11% Similarity=0.052 Sum_probs=80.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC------------------CCCCcc-----cccceeeeeEEEEECCeEEEEEEEeCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSL-----QMAGLNLINKTLMVQGARIAFSIWDVG 156 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~------------------~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 156 (284)
..+|+++|.+|+|||||+++|+.. ...... ..+........+..++ +.+.||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~liDTP 90 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD--YLINLLDTP 90 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT--EEEEEECCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC--EEEEEEECC
Confidence 579999999999999999999621 111110 1122222233344444 568899999
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|+++|......+++.+|++|+|+|+++..+.+....|. .+... ..|.|+|+||+|+
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl 146 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDR 146 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCC
Confidence 99999999999999999999999999988877766664 33332 3455899999996
No 168
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.74 E-value=1.5e-18 Score=153.77 Aligned_cols=132 Identities=11% Similarity=0.041 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCC-C-cccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh-hHHHHH
Q 023316 115 SFVVKYVGNEQE-R-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV 191 (284)
Q Consensus 115 sLl~~l~~~~~~-~-~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~ 191 (284)
+|+.+|+.+.|. . ..+|+|..+. ..+..++ .+++||| +++|+.+++.|++++|++|+|||+++++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 788999999886 4 4468895443 3332333 5789999 9999999999999999999999999997 799999
Q ss_pred HHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023316 192 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 192 ~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
.|+..+.. .+.|+|||+||+|| .+. +. .+++.++++.++ +++++|||++|.||+++|..+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL----~~~--~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDL----YDE--DD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGG----CCH--HH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHc----CCc--hh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99998865 34566899999996 221 11 245677787777 8999999999999999998764
No 169
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.74 E-value=2.9e-19 Score=167.80 Aligned_cols=159 Identities=10% Similarity=0.106 Sum_probs=106.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 177 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iil 177 (284)
...+|+++|+.++|||||+++|.+..+. ...++++.+.....+..++. .+.+|||+|++.|..++..++..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~--~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENG--MITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSS--CCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCE--EEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 3578999999999999999999887655 33334444443334444554 46799999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHH
Q 023316 178 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNK 255 (284)
Q Consensus 178 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~--~~~~~~Sa~~~~~v~~ 255 (284)
|+|+++....+....| ..+.. ...|.|+++||+|+...-++..... ..+...+++.++ ++++++||++|.|+++
T Consensus 81 VVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~-l~~~~~~~~~~~~~~~~v~vSAktG~gI~e 156 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNE-LSQYGILPEEWGGESQFVHVSAKAGTGIDE 156 (501)
T ss_dssp EEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCC-CCCCCCCTTCCSSSCEEEECCTTTCTTCTT
T ss_pred EeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHH-HHHhhhhHHHhCCCccEEEEeeeeccCcch
Confidence 9999884322222222 22222 2345689999999743211110000 000011122333 7899999999999999
Q ss_pred HHHHHHHH
Q 023316 256 IFKFIMAK 263 (284)
Q Consensus 256 lf~~l~~~ 263 (284)
+|+++...
T Consensus 157 Lle~I~~~ 164 (501)
T 1zo1_I 157 LLDAILLQ 164 (501)
T ss_dssp HHHHTTTT
T ss_pred hhhhhhhh
Confidence 99998753
No 170
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.8e-18 Score=166.79 Aligned_cols=156 Identities=14% Similarity=0.102 Sum_probs=101.7
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------------------------ccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~~ 145 (284)
...+||+++|.+++|||||+++|++.... .. .+.++.+.....+...
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~- 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS-
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC-
Confidence 44789999999999999999999876432 11 0222333333334333
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhH-CCCCc-eEEEEeCCCCCCCCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRLP 220 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~~~~~~~~~l~~~-~~~~~-~Ilv~nK~Dl~~~~~ 220 (284)
...+.||||+|+++|......+++.+|++|+|+|+++.. +|+....+...+... ....+ +|||+||+|+.+. .
T Consensus 244 -~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~-~ 321 (611)
T 3izq_1 244 -RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-S 321 (611)
T ss_dssp -SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT-C
T ss_pred -CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch-h
Confidence 456889999999999988889999999999999998742 111111122222111 12334 4789999996210 0
Q ss_pred CCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316 221 PDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI 256 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l 256 (284)
........++...++...+ ++++++||++|.|+.++
T Consensus 322 ~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 322 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 0111122455556666554 58999999999999876
No 171
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.73 E-value=1e-18 Score=154.75 Aligned_cols=162 Identities=8% Similarity=0.090 Sum_probs=86.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC-CCCCcc---------cccceeeeeEEEEECCeEEEEEEEeCCCC-------cC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN-EQERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SR 160 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~-~~~~~~---------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~-------e~ 160 (284)
...++|+|+|++|+|||||++++.+. .+.... ++.+.......+..++....+.+|||+|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 34689999999999999999998875 443211 12222222222233455678999999998 66
Q ss_pred Cccccc-------ccccC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 161 SFDHVP-------IACKD-------------AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 161 ~~~~~~-------~~~~~-------------ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+..+.. .+++. +++++++.+.+. .+++.+. .+.++......+.++|+||+|+.
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl~---- 168 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIHNKVNIVPVIAKADTL---- 168 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHTTTSCEEEEECCGGGS----
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHHhcCCEEEEEEeCCCC----
Confidence 666654 44432 233444443322 2333333 12333334344558999999962
Q ss_pred CCccc-chHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 221 PDLQW-TIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 221 ~~~~~-~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
...+. ...+++.++++.++++++++||+++ |++++|..+++.+...
T Consensus 169 ~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 169 TLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 21111 2256788899999999999999999 9999999999988654
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.72 E-value=1.1e-17 Score=152.21 Aligned_cols=146 Identities=8% Similarity=-0.043 Sum_probs=105.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 181 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~ 181 (284)
+|+++|.+++|||||+++|+ ...++.+.....+..++ ..+.+|||+|+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-------~~giTi~~~~~~~~~~~--~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-------KKGTSSDITMYNNDKEG--RNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-------EEEEESSSEEEEECSSS--SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-------hCCEEEEeeEEEEecCC--eEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 11222222222333333 458899999999998777778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCce-EEEEe-CCCCCCCCCCCcc-cchHHHHHHHHHHcC---CcEEE--EcCCC---C
Q 023316 182 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGT-KFDDFVRLPPDLQ-WTIATQARAYAKAMK---ATLFF--SSATH---N 250 (284)
Q Consensus 182 ~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~n-K~Dl~~~~~~~~~-~~~~~~~~~~a~~~~---~~~~~--~Sa~~---~ 250 (284)
+ ...+....+|+..+... ..+. |+++| |+|+ +... ....++++++++..+ +++++ +||++ +
T Consensus 93 ~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g 164 (370)
T 2elf_A 93 P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPF 164 (370)
T ss_dssp T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTT
T ss_pred C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCC
Confidence 4 34455556676666543 3455 78888 9994 2111 112356666666553 68999 99999 9
Q ss_pred cCHHHHHHHHHHHHh
Q 023316 251 INVNKIFKFIMAKLF 265 (284)
Q Consensus 251 ~~v~~lf~~l~~~i~ 265 (284)
.|++++|+.+...+.
T Consensus 165 ~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 165 EGVDELKARINEVAE 179 (370)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhcc
Confidence 999999999988764
No 173
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=1.5e-17 Score=151.94 Aligned_cols=134 Identities=18% Similarity=0.219 Sum_probs=99.9
Q ss_pred ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 023316 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (284)
Q Consensus 131 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~ 200 (284)
|+|++. ..+.+++ +.+++|||+||++++.+|..||++++++|+|||+++ .++|+++..|++.+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 455554 3555665 789999999999999999999999999999999999 89999999999998765
Q ss_pred C--CCCceEEEEeCCCCCCC-C---C--------CC-------------cccchHHHHHHHH-----HH--------cCC
Q 023316 201 N--QTAIPILIGTKFDDFVR-L---P--------PD-------------LQWTIATQARAYA-----KA--------MKA 240 (284)
Q Consensus 201 ~--~~~~~Ilv~nK~Dl~~~-~---~--------~~-------------~~~~~~~~~~~~a-----~~--------~~~ 240 (284)
. .+.|+||+|||+||... + . +. ......+++..|+ +. .++
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 2 34455899999997321 0 0 00 0000135555553 22 245
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023316 241 TLFFSSATHNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 241 ~~~~~Sa~~~~~v~~lf~~l~~~i~~~~ 268 (284)
.+++|||+++.||+++|..+...+.+..
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999988886543
No 174
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=4.4e-18 Score=159.07 Aligned_cols=154 Identities=9% Similarity=0.050 Sum_probs=102.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC--CCCC------------------------c------ccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN--EQER------------------------S------LQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~ 145 (284)
...++|+++|++++|||||+++|++. .+.. + ...++.+.....+. .
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~--~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE--T 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE--C
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe--c
Confidence 35799999999999999999999864 1210 0 01222233323333 3
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~~---~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~ 218 (284)
....+.+|||+|+++|......+++.+|++|+|+|+++.. +|+ ....++..+.. ...+ .|+++||+|+.+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccC
Confidence 3456889999999999988888999999999999998763 231 22222222322 2334 4789999996210
Q ss_pred CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI 256 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~-----~~~~~~Sa~~~~~v~~l 256 (284)
+++......++.+.+++.++ ++++++||++|.|+.++
T Consensus 161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 01111223566777777776 68999999999999754
No 175
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.71 E-value=1.8e-18 Score=152.39 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=98.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC-C------cccc----------------------ccee--------------
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE-R------SLQM----------------------AGLN-------------- 135 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~-~------~~~t----------------------~~~~-------------- 135 (284)
..+||+|+|++|||||||+|+|++.++. . ..++ +..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998874 1 1122 0000
Q ss_pred -------eeeEEEEECC-eEEEEEEEeCCCCcC-------------CcccccccccCCcEEE-EEEeCCChhhHHHHHHH
Q 023316 136 -------LINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVGW 193 (284)
Q Consensus 136 -------~~~~~~~~~~-~~~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~ii-lv~d~~~~~s~~~~~~~ 193 (284)
.....+.+.+ ....+.+|||+|... +..+...|++.++++| +|+|+++..+..+...|
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0000111111 124688999999753 3345667888888776 69999876555444455
Q ss_pred HHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH--cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 194 YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MK-ATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 194 ~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~--~~-~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
+..+.. ...+.|+|+||+|+. +.. .. ..+..+..... .+ .+++++||++|.|++++|+++...
T Consensus 185 ~~~~~~--~~~~~i~V~NK~Dl~---~~~-~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVDP--QGQRTIGVITKLDLM---DEG-TD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHCT--TCSSEEEEEECGGGS---CTT-CC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhCC--CCCeEEEEEEccccC---CCC-ch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 555432 234558999999973 211 11 11211110001 12 357789999999999999998864
No 176
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.71 E-value=1.8e-17 Score=166.53 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=112.9
Q ss_pred CceeeEEEEEcCCCCChHHHHHHHhcCC-------CC--------CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCC
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKYVGNE-------QE--------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l~~~~-------~~--------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~ 161 (284)
....+||+++|+.++|||||+++|++.. +. ....+.|.++....+.++.....+.+|||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3457999999999999999999998741 10 01123344443334445445567889999999999
Q ss_pred cccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023316 162 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 239 (284)
Q Consensus 162 ~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~ 239 (284)
......+++.+|++|+|+|+++....+. ..|+..+... ..| .|+++||+|+. .... ...+.++++.+++..+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l--gIP~IIVVINKiDLv---~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV--GVPYIIVFLNKCDMV---DDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH--TCSCEEEEEECCTTC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc--CCCeEEEEEeecccc---cchhhHHHHHHHHHHHHHhcc
Confidence 8888888999999999999998654333 3455555443 344 36899999962 1111 1123566777887776
Q ss_pred -----CcEEEEcCCCC--------cCHHHHHHHHHHHHhC
Q 023316 240 -----ATLFFSSATHN--------INVNKIFKFIMAKLFN 266 (284)
Q Consensus 240 -----~~~~~~Sa~~~--------~~v~~lf~~l~~~i~~ 266 (284)
++++++||++| .|+.++|+.+...+..
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 68999999999 5799999998876643
No 177
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.70 E-value=1.5e-16 Score=137.93 Aligned_cols=114 Identities=18% Similarity=0.153 Sum_probs=86.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccccccc------
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 170 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~------ 170 (284)
..+||+++|..|+|||||+++|++..+. ..+++++.......+..++. .+.+|||+|++++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 3799999999999999999999998864 44555555555556666665 5789999999998776666554
Q ss_pred ---CCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316 171 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD 215 (284)
Q Consensus 171 ---~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~---~~~Ilv~nK~Dl 215 (284)
.+|++|+|+|++... +... ..|++.+.+.... .+.|+|+||+|+
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 889999999997755 4433 4788877765432 244799999997
No 178
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=1.1e-17 Score=153.34 Aligned_cols=84 Identities=19% Similarity=0.204 Sum_probs=48.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc--eeeeeEEE-------------------EECCe-EEEEEEEeCCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG--LNLINKTL-------------------MVQGA-RIAFSIWDVGG 157 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~--~~~~~~~~-------------------~~~~~-~~~l~l~Dt~G 157 (284)
+||+++|.+|||||||+|++++.... ..++.++ .+.....+ .+++. .+.+++|||+|
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999998744 4555222 22221111 12332 47799999999
Q ss_pred CcC----Cccccc---ccccCCcEEEEEEeCCCh
Q 023316 158 DSR----SFDHVP---IACKDAVAILFMFDLTSR 184 (284)
Q Consensus 158 ~e~----~~~~~~---~~~~~ad~iilv~d~~~~ 184 (284)
+.+ ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864 333444 346899999999999886
No 179
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.68 E-value=6e-17 Score=146.69 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=93.7
Q ss_pred ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhH
Q 023316 131 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 200 (284)
Q Consensus 131 t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~----------~~s~~~~~~~~~~l~~~ 200 (284)
|+|++. ..+.+++ +.+++|||+||+.++.+|..||++++++|+|||+++ ..++.+...|+..+...
T Consensus 188 T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~ 263 (362)
T 1zcb_A 188 TKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNN 263 (362)
T ss_dssp CSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTC
T ss_pred ccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcc
Confidence 455543 3455554 778999999999999999999999999999999999 77999999999888764
Q ss_pred --CCCCceEEEEeCCCCCCC----------CCCCccc-chHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHH
Q 023316 201 --NQTAIPILIGTKFDDFVR----------LPPDLQW-TIATQARAYAK-----------AMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 201 --~~~~~~Ilv~nK~Dl~~~----------~~~~~~~-~~~~~~~~~a~-----------~~~~~~~~~Sa~~~~~v~~l 256 (284)
..+.|.||++||+||... +|+.... ...+++..++. ..++.+++|||+++.||+++
T Consensus 264 ~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~v 343 (362)
T 1zcb_A 264 RVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLV 343 (362)
T ss_dssp GGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHH
T ss_pred hhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHH
Confidence 234455899999997311 0110011 33566766652 34678899999999999999
Q ss_pred HHHHHHHHhCCc
Q 023316 257 FKFIMAKLFNLP 268 (284)
Q Consensus 257 f~~l~~~i~~~~ 268 (284)
|.++...+.+..
T Consensus 344 F~~v~~~i~~~~ 355 (362)
T 1zcb_A 344 FRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999886543
No 180
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=8.1e-18 Score=161.67 Aligned_cols=152 Identities=13% Similarity=0.087 Sum_probs=81.2
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--------------------------------CcccccceeeeeEEEEECC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG 145 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~ 145 (284)
...++|+++|.+++|||||+++|++..-. ...++++.+.....+..+
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~- 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD- 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC-
Confidence 34689999999999999999999642100 001233333333333333
Q ss_pred eEEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChh---hH--H-HHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316 146 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL--N-SIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218 (284)
Q Consensus 146 ~~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~---s~--~-~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~ 218 (284)
...+.||||+|+++|......+++.+|++|+|+|+++.. .+ . .....+..+.. . ..+ +|+|+||+|+...
T Consensus 254 -~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-gip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 254 -KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-GISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-SCCCEEEEEECGGGGTT
T ss_pred -CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-CCCeEEEEEeccccccc
Confidence 356789999999999988888999999999999998642 11 0 01111222222 1 334 4789999996210
Q ss_pred CCCCcccchHHHHHHHH-HHcCC-----cEEEEcCCCCcCHH
Q 023316 219 LPPDLQWTIATQARAYA-KAMKA-----TLFFSSATHNINVN 254 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a-~~~~~-----~~~~~Sa~~~~~v~ 254 (284)
..+....+.++...+. +..++ +++++||++|.|+.
T Consensus 331 -~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 331 -SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp -CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred -cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 0111112244555555 55554 69999999999998
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=148.86 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=87.0
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC-Cc--------ccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc------
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------ 162 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~------ 162 (284)
...++|+|+|++|+|||||++.|++..+. .. .++++.+.....+...+....+.+||++|...+.
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 44689999999999999999999988763 21 1233323222222234455678999999987642
Q ss_pred -c------------------cccccccCCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 163 -D------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 163 -~------------------~~~~~~~~ad~iilv~d~~~~-~s~~~~~-~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
. +.+.++.++++.+++|+.... .++.... .|+..+. ...++|+|+||+|+ +..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dl---l~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADT---LTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTS---SCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccC---ccH
Confidence 1 234566777777777766543 4555554 6777774 24455899999996 221
Q ss_pred Ccccch--HHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 222 DLQWTI--ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 222 ~~~~~~--~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
.... .+++..++..++++++++||+++.++.++|..+...+
T Consensus 183 --~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 --EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp --HHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred --HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 1122 3678888888999999999999999999888877654
No 182
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.67 E-value=4.2e-16 Score=151.74 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=81.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc-------------cc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS-------------LQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~-------------~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~ 162 (284)
..+|+++|+.|+|||||+++|++.... .. .+ ..+..+......+....+.+.+|||+|+++|.
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f~ 88 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFV 88 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGH
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccchH
Confidence 578999999999999999999854321 00 00 11334444444443345778899999999999
Q ss_pred ccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 163 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 163 ~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
.....+++.+|++++|+|+++....... .|+..+... ..|.|+++||+|+
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~~--~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAERL--GLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHT--TCCEEEEEECGGG
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHHc--cCCEEEEecCCch
Confidence 8888999999999999999877654443 444555442 3455899999996
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.66 E-value=6e-16 Score=134.73 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=80.4
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCcccccc---------
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI--------- 167 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~--------- 167 (284)
..+||+++|.+|+|||||+|+|++..+. ...+++..+.....+..++ ..+.+|||+|++++..+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC--eEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 3699999999999999999999998864 3333333333333333344 56889999999887644332
Q ss_pred cccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhHCCC---CceEEEEeCCCC
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD 215 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~-~~~~~~l~~~~~~---~~~Ilv~nK~Dl 215 (284)
..+.+|++|+|+|++.. ++... ..|+..+.+.... .+.|+|+||+|+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 13479999999999764 34433 4788888765333 355899999996
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.64 E-value=1.4e-16 Score=155.87 Aligned_cols=167 Identities=16% Similarity=0.122 Sum_probs=107.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc--------eeeeeE------------------------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG--------LNLINK------------------------------ 139 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~--------~~~~~~------------------------------ 139 (284)
.++|+|+|.+|+|||||+|+|++.++. ...+++. .+....
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 689999999999999999999998754 3344331 000000
Q ss_pred ---------------EEEECCeE--EEEEEEeCCCCcC---CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh
Q 023316 140 ---------------TLMVQGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 199 (284)
Q Consensus 140 ---------------~~~~~~~~--~~l~l~Dt~G~e~---~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~ 199 (284)
.+.++... ..+.||||+|... .......+++.+|++|+|+|+++..+..+...|.+.+..
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~ 228 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG 228 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence 01111100 2478999999765 344566788999999999999999888887777655533
Q ss_pred HCCCCceEEEEeCCCCCCCC--CCCcc-cc--hHHHHHH-----HHHH--------cCCcEEEEcCC-------------
Q 023316 200 WNQTAIPILIGTKFDDFVRL--PPDLQ-WT--IATQARA-----YAKA--------MKATLFFSSAT------------- 248 (284)
Q Consensus 200 ~~~~~~~Ilv~nK~Dl~~~~--~~~~~-~~--~~~~~~~-----~a~~--------~~~~~~~~Sa~------------- 248 (284)
. ..+.++|+||+|+...- +++.. .. ..+.... +... .+.+++++||+
T Consensus 229 ~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~ 306 (695)
T 2j69_A 229 R--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD 306 (695)
T ss_dssp S--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCC
T ss_pred h--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhh
Confidence 2 33457999999963110 00000 00 0011111 1111 12478999999
Q ss_pred -CCcCHHHHHHHHHHHHhCCc
Q 023316 249 -HNINVNKIFKFIMAKLFNLP 268 (284)
Q Consensus 249 -~~~~v~~lf~~l~~~i~~~~ 268 (284)
++.|+++++..+...+....
T Consensus 307 ~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 307 LDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTSSHHHHHHHHHHHHHHTH
T ss_pred hhccCHHHHHHHHHHHHHHhH
Confidence 99999999999988775443
No 185
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=1.3e-14 Score=130.94 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=96.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc-
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF- 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~- 162 (284)
.+||+++|.+|||||||+|++++..+. ..++.++.+.....+.+++.. ..+++|||+|+.++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 368999999999999999999998865 556633323233345555532 568999999998863
Q ss_pred ---ccccc---cccCCcEEEEEEeCCCh----------hhHHHHHHHHHHHH----------------------------
Q 023316 163 ---DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEAR---------------------------- 198 (284)
Q Consensus 163 ---~~~~~---~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l~---------------------------- 198 (284)
.+... +++.+|++++|+|+++. ++++++..|..++.
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 44444 37899999999999862 45555544333331
Q ss_pred ------------h-------------------H--CCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023316 199 ------------K-------------------W--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 245 (284)
Q Consensus 199 ------------~-------------------~--~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 245 (284)
. + ....|.|+++|+.|.. + . .....+.+++++...+++++.+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~--~-~n~~~~~v~~~~~~~~~~~i~~ 236 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--F--E-NNPYLDRVREIAAKEGAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--S--S-SCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--c--c-ccHHHHHHHHHHHHcCCCEEEe
Confidence 0 0 0124558999999941 1 1 1233677888998889999999
Q ss_pred cCCC
Q 023316 246 SATH 249 (284)
Q Consensus 246 Sa~~ 249 (284)
||+.
T Consensus 237 sA~~ 240 (363)
T 1jal_A 237 CAAI 240 (363)
T ss_dssp CHHH
T ss_pred chHH
Confidence 9764
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.62 E-value=3.7e-15 Score=141.37 Aligned_cols=115 Identities=10% Similarity=0.064 Sum_probs=76.2
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC--CC----------------C---cccccceeeeeEEEEECCeEEEEEEEeCCC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE--QE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG 157 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G 157 (284)
...+|+++|++|+|||||+++|+... +. . ...+.|.++......+......+.+|||+|
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 36899999999999999999998631 10 0 001223333222223322336688999999
Q ss_pred CcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 158 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 158 ~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+++|......+++.+|++|+|+|+++...... ..++..+.. ...|.|+++||+|+.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCc
Confidence 99999888889999999999999988654322 233333322 234458999999974
No 187
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.61 E-value=3.1e-16 Score=142.19 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Ccccccc-----e----------------------------------------
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAG-----L---------------------------------------- 134 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~-----~---------------------------------------- 134 (284)
.+|+|+|++|+|||||+++|++..+. ....+.+ .
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 49999999999999999999998763 1111110 0
Q ss_pred -----ee--eeEEEEE-CCeEEEEEEEeCCCCcCC-------------cccccccccCCcEEEEEEeCCChhhHHHHHHH
Q 023316 135 -----NL--INKTLMV-QGARIAFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGW 193 (284)
Q Consensus 135 -----~~--~~~~~~~-~~~~~~l~l~Dt~G~e~~-------------~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~ 193 (284)
.+ ....+.+ ......+.+|||+|..++ ..+...|++++|++|+|+|.++.+... ..|
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~ 192 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA 192 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence 00 0001111 111234789999999886 456677899999999999876544322 345
Q ss_pred HHHHHhHCCCC-ceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316 194 YSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 194 ~~~l~~~~~~~-~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
+..+....... +.|+|+||+|+. +.. . ...+.+..++...+.+|+++|+.++.++++.+....
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~---~~~-~-~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLM---DKG-T-DAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGC---CTT-C-CSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccC---CCc-c-cHHHHHcCccccccCCeEEEEECChHHhccCCCHHH
Confidence 55555544444 458999999973 221 1 123334445556678999999999999887665533
No 188
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=5.2e-15 Score=144.60 Aligned_cols=114 Identities=16% Similarity=0.104 Sum_probs=81.9
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCC--CC------------Cc-----ccccceeeeeEEEEECCeEEEEEEEeCCCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNE--QE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD 158 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~--~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 158 (284)
....+|+++|+.|+|||||+++|+... +. .. ...+........+..++ +.+.+|||+|+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--HRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT--EEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC--eEEEEEECcCc
Confidence 347899999999999999999998421 10 00 01111122222334444 66889999999
Q ss_pred cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 159 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 159 e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
.+|...+..+++.+|++|+|+|+++..+++....|.. +... +.|.++++||+|+.
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~--~~p~ivviNKiD~~ 142 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKT 142 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 9999999999999999999999999888888777764 3332 44568999999974
No 189
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.58 E-value=5.7e-18 Score=143.10 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=87.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeee------------eEEEEEC-CeEEE----------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQ-GARIA---------------- 149 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~------------~~~~~~~-~~~~~---------------- 149 (284)
..||+++|++|||||||+++|+...+.. ..++++.++. ...+.++ +..+.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 4799999999999999999999876653 3345555544 2333332 22222
Q ss_pred ---EEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccc
Q 023316 150 ---FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 226 (284)
Q Consensus 150 ---l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~ 226 (284)
+.+.|++|.-.. ...|-...+..+.+.|......... .....+ ..+.++|+||+|+. +. ...
T Consensus 118 ~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~----~~-~~~ 182 (226)
T 2hf9_A 118 EIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLA----DA-VGA 182 (226)
T ss_dssp GCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGH----HH-HTC
T ss_pred CCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccC----ch-hHH
Confidence 334444442100 0011112344556666432111000 001111 23459999999961 11 112
Q ss_pred hHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 227 IATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 227 ~~~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
..++...+++.+ +++++++||++|.|++++|+++...+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 183 DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 345566666654 578999999999999999999988764
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.58 E-value=2.8e-15 Score=133.02 Aligned_cols=115 Identities=12% Similarity=0.028 Sum_probs=68.4
Q ss_pred EEEEEEeCCCCcC-------------CcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCC
Q 023316 148 IAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKF 213 (284)
Q Consensus 148 ~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~ 213 (284)
..+.+|||+|..+ +......+++.+|++++|+|.++.. +-.....++..+.. ...+.|+|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4588999999864 3345566889999999999975432 11111123333321 234558999999
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC---C---CcCHHHHHHHHHHHHhCCcc
Q 023316 214 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT---H---NINVNKIFKFIMAKLFNLPW 269 (284)
Q Consensus 214 Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~---~---~~~v~~lf~~l~~~i~~~~~ 269 (284)
|+. ... .. ..+.+.......+..++++|+. + +.|+.++++.+...+...++
T Consensus 209 Dl~---~~~-~~-~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DLM---DKG-TD-AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TSS---CSS-CC-CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred ccC---Ccc-hH-HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 973 221 11 1222221111223567776554 4 68899999999888876654
No 191
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=1.3e-14 Score=141.90 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=81.1
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC--CC------------Cccc---ccceee--eeEEEEEC-----CeEEEEEEEe
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE--QE------------RSLQ---MAGLNL--INKTLMVQ-----GARIAFSIWD 154 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~--~~------------~~~~---t~~~~~--~~~~~~~~-----~~~~~l~l~D 154 (284)
...+|+++|+.++|||||+++|+... +. ...+ ..|.++ ....+.++ +..+.+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 35799999999999999999997531 11 0000 111122 11223332 3447899999
Q ss_pred CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
|+|+++|......+++.+|++|+|+|+++..+.+....|.. +.. .+.|+++++||+|+.
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCcc
Confidence 99999999999999999999999999998877666655643 322 244558999999964
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=1.1e-14 Score=142.23 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=81.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc--CCCC------------Cc-----ccccceeeeeEEEEECCeEEEEEEEeCCCCc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVG--NEQE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 159 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~--~~~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e 159 (284)
...+|+++|.+|+|||||+++|+. ..+. .. ...+........+.+++ ..+.+|||+|+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCc
Confidence 368999999999999999999985 2221 00 01111122223344454 568899999999
Q ss_pred CCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 160 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 160 ~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
+|......+++.+|++|+|+|+++..+++....|.. +... ..|.|+|+||+|+.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKL 140 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 999989999999999999999999888877766654 4332 44568999999974
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.56 E-value=5.6e-15 Score=124.16 Aligned_cols=153 Identities=10% Similarity=0.029 Sum_probs=92.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-cccccceeee------------eEEEEECC------------------eEE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI 148 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~t~~~~~~------------~~~~~~~~------------------~~~ 148 (284)
..+|+++|.+|||||||+++|++..... ....+..++. ...+.++. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 4689999999999999999998753211 0111111110 01111111 124
Q ss_pred EEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchH
Q 023316 149 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 228 (284)
Q Consensus 149 ~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~ 228 (284)
.+.+|||+|+-.... .+...++.+++|+|+++.... ...+...+ ..+.++|+||+|+. +. .....
T Consensus 110 d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl~----~~-~~~~~ 174 (221)
T 2wsm_A 110 DLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVALA----EA-VGADV 174 (221)
T ss_dssp SEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGGH----HH-HTCCH
T ss_pred CEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccCC----cc-hhhHH
Confidence 577999999621111 122367889999998765421 11222221 24558999999961 11 11123
Q ss_pred HHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 229 TQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 229 ~~~~~~a~~~--~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
++...+++.. +++++++||++|.|++++|+++...+...
T Consensus 175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4455555554 47899999999999999999999887544
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=2.2e-16 Score=142.75 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=88.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-Cc------ccc----------------------c------------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RS------LQM----------------------A------------------ 132 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~------~~t----------------------~------------------ 132 (284)
..+|+|+|++|||||||+|+|++.++. .. .|+ +
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 579999999999999999999998864 11 122 0
Q ss_pred ---ceeeeeEEEEECCe-EEEEEEEeCCCCcC-------------CcccccccccCCcEEEEE-EeCCChhhHHHHHHHH
Q 023316 133 ---GLNLINKTLMVQGA-RIAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFM-FDLTSRCTLNSIVGWY 194 (284)
Q Consensus 133 ---~~~~~~~~~~~~~~-~~~l~l~Dt~G~e~-------------~~~~~~~~~~~ad~iilv-~d~~~~~s~~~~~~~~ 194 (284)
|.......+.+.+. ...+.||||+|... +..+...|++.++.+|++ .|.+....-.+...++
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~ 190 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVA 190 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHH
Confidence 00000111112111 24588999999743 334566677776655554 5554422212222233
Q ss_pred HHHHhHCCC-CceEEEEeCCCCCCCCCCCcccchHHHHH--HHHHHcC-CcEEEEcCCCCcCHHHHHHHHHH
Q 023316 195 SEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQAR--AYAKAMK-ATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 195 ~~l~~~~~~-~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~a~~~~-~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
.. ..+. .+.|+|+||+|+.+ .. ... .+..+ .+....+ .+++.+||+++.|++++|+.+..
T Consensus 191 ~~---~~~~~~~~i~V~NK~Dl~~---~~-~~~-~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 191 KE---VDPQGQRTIGVITKLDLMD---EG-TDA-RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HH---HCTTCTTEEEEEECGGGSC---TT-CCC-HHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HH---hCcCCCceEEEeccccccC---cc-hhH-HHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 33 3333 34489999999732 11 111 11111 0111122 24567999999999999999876
No 195
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.54 E-value=1.9e-14 Score=130.35 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=97.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC-Cccc--ccceeeeeEEEEECC-------------------eEEEEEEEeCCCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE-RSLQ--MAGLNLINKTLMVQG-------------------ARIAFSIWDVGGD 158 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~-------------------~~~~l~l~Dt~G~ 158 (284)
++|+++|.+|||||||++++++.... ..++ |+..+.. ...+.+ ....+++|||+|+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVG--VVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEE--EEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceecccee--eEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 58999999999999999999987643 4444 2332222 223322 2356889999999
Q ss_pred cCCc----ccccc---cccCCcEEEEEEeCCCh----------hhHHHHHHHHHHH------------------------
Q 023316 159 SRSF----DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEA------------------------ 197 (284)
Q Consensus 159 e~~~----~~~~~---~~~~ad~iilv~d~~~~----------~s~~~~~~~~~~l------------------------ 197 (284)
.++. .+... +++.+|++++|+|+++. +.+.++..+..+|
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~ 159 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRE 159 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchh
Confidence 8753 34333 47899999999999852 3333332221111
Q ss_pred -----------HhH--C----------------------C-CCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023316 198 -----------RKW--N----------------------Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 241 (284)
Q Consensus 198 -----------~~~--~----------------------~-~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~ 241 (284)
..+ . - ..|.|+++||.|. ++.....+...+.++++++..+++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~--d~~~~~~n~~~~~v~~~a~~~g~~ 237 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEE--DLPDGRGNPQVEAVRRKALEEGAE 237 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGG--GTTTCTTCHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHH--hhcccchhhHHHHHHHHHHHcCCe
Confidence 000 0 1 1355899999983 111111133467788899988999
Q ss_pred EEEEcCCCCcCHHHHHH
Q 023316 242 LFFSSATHNINVNKIFK 258 (284)
Q Consensus 242 ~~~~Sa~~~~~v~~lf~ 258 (284)
++++||++..++.+++.
T Consensus 238 vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 238 VVVVSARLEAELAELSG 254 (368)
T ss_dssp EEEECHHHHHHHHTSCH
T ss_pred EEEeechhHHHHHHhch
Confidence 99999998666655443
No 196
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.50 E-value=1.7e-14 Score=130.48 Aligned_cols=103 Identities=11% Similarity=0.044 Sum_probs=67.3
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 227 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~ 227 (284)
+.+.||||+|... .....+..+|++|+|+|.+..+.++.+..++ ...+.++|+||+|+ .. ....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~-------~~~p~ivVlNK~Dl----~~--~~~~ 235 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGV-------LELADIVVVNKADG----EH--HKEA 235 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTS-------GGGCSEEEEECCCG----GG--HHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhH-------hhcCCEEEEECCCC----cC--hhHH
Confidence 5678999999543 2223458999999999987765543322111 12355899999995 11 1111
Q ss_pred HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 228 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 228 ~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
.....++.+. ++.+++.+||++|.|++++++++...+..
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 1112222222 15789999999999999999999887743
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.45 E-value=1.9e-13 Score=136.22 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=84.9
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCC------------CCCc-----cc--ccceeeeeEEEE------------ECCeE
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNE------------QERS-----LQ--MAGLNLINKTLM------------VQGAR 147 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~------------~~~~-----~~--t~~~~~~~~~~~------------~~~~~ 147 (284)
...||+|+|+.++|||||+++|+... +... .. |+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 36799999999999999999998641 1110 11 222222222222 24557
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
+.+.||||+|+++|...+..+++.+|++|+|+|+++..+++....|..... ...|+|+++||+|+
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence 889999999999999999999999999999999999988888777765442 24566899999996
No 198
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.40 E-value=1.1e-12 Score=115.90 Aligned_cols=99 Identities=8% Similarity=0.009 Sum_probs=79.9
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHH
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA 235 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a 235 (284)
.++++..+.+.+++++|++++|||+++++ +++.+..|+..+.. .+.|+|+|+||+|| .+ +......++..+++
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL---~~-~~~v~~~~~~~~~~ 138 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDL---LN-EEEKKELERWISIY 138 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CC-HHHHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccC---CC-ccccHHHHHHHHHH
Confidence 48889999999999999999999999986 89999999987765 35566999999996 22 11101135566777
Q ss_pred HHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023316 236 KAMKATLFFSSATHNINVNKIFKFIM 261 (284)
Q Consensus 236 ~~~~~~~~~~Sa~~~~~v~~lf~~l~ 261 (284)
+..+.+++++||++|.|++++|..+.
T Consensus 139 ~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 139 RDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 77899999999999999999998754
No 199
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.39 E-value=2.3e-13 Score=129.64 Aligned_cols=114 Identities=16% Similarity=0.053 Sum_probs=77.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC----Ccccccce----eeeeE-EEEEC-----------------C------eE
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE----RSLQMAGL----NLINK-TLMVQ-----------------G------AR 147 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~----~~~~t~~~----~~~~~-~~~~~-----------------~------~~ 147 (284)
..+|+|+|.+|+|||||+|+|++.++. ...+++.. ..... .+..+ | ..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 579999999999999999999998863 33333311 00000 00000 0 00
Q ss_pred ---------EEEEEEeCCCCcC-----------CcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceE
Q 023316 148 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 207 (284)
Q Consensus 148 ---------~~l~l~Dt~G~e~-----------~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~I 207 (284)
..+.+|||+|... |......++..+|++|+|+|+++....+....|++.+... ..+.+
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvi 222 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIR 222 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEE
Confidence 2478999999875 3345566788999999999998865556667777776432 23558
Q ss_pred EEEeCCCC
Q 023316 208 LIGTKFDD 215 (284)
Q Consensus 208 lv~nK~Dl 215 (284)
+|+||+|+
T Consensus 223 lVlNK~Dl 230 (550)
T 2qpt_A 223 VVLNKADM 230 (550)
T ss_dssp EEEECGGG
T ss_pred EEEECCCc
Confidence 99999996
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.39 E-value=2.3e-13 Score=122.72 Aligned_cols=101 Identities=11% Similarity=0.030 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 227 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~ 227 (284)
+.+.++||+|.... .......+|++++|+|.++....+.+.. .+ ...+.++|+||+|+ .+. ...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl----~~~--~~~ 230 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDG----DLI--VPA 230 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSG----GGH--HHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecC----CCc--hhH
Confidence 45679999996421 2334678999999999987543322211 11 12345899999995 111 000
Q ss_pred HHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 228 ATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 228 ~~~~~~~a~----------~~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
......+.. ..+.+++.+||++|.|+++++++|...+
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 111222221 1245788999999999999999998765
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.33 E-value=6.3e-13 Score=119.54 Aligned_cols=104 Identities=11% Similarity=0.012 Sum_probs=62.7
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCccc-c
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW-T 226 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~-~ 226 (284)
+.+.||||+|...... ...+.+|++++|+|.++.+.++.+... .. ..+.++|+||+|+ ...... .
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl----~~~~~~~~ 214 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDG----DNHTNVAI 214 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCT----TCHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCC----CChHHHHH
Confidence 4578999999765432 246899999999998765432211111 11 1244899999996 211010 0
Q ss_pred hHHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 227 IATQARAYAKAM-------KATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 227 ~~~~~~~~a~~~-------~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
..++.+...... ..+++.+||++|.|++++++++...+.
T Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 215 ARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 011222222222 357889999999999999999988764
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.31 E-value=3.3e-12 Score=110.00 Aligned_cols=112 Identities=10% Similarity=0.018 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCcCCccccc------ccccCCcEEEEEEeCCChhhHHHHH---HHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFDHVP------IACKDAVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~------~~~~~ad~iilv~d~~~~~s~~~~~---~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
+.+.+|||+|+..+..... .++.+ ++++++.|.....+..+.. .+..... .....|.++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~-- 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL-- 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC--
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc--
Confidence 4688999999987543322 14466 8888888875433322222 1111111 11234558999999962
Q ss_pred CCCCccc-chHH---HHH----H-----------------HHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 219 LPPDLQW-TIAT---QAR----A-----------------YAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 219 ~~~~~~~-~~~~---~~~----~-----------------~a~~~~--~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
...+. ...+ +.. . +++.++ ++++++||+++.|++++|+++.+.+.
T Consensus 185 --~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 --SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp --CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11110 0011 000 1 123433 48999999999999999999987763
No 203
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.2e-11 Score=109.27 Aligned_cols=155 Identities=13% Similarity=0.141 Sum_probs=100.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCc----ccccc---cccC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVPI---ACKD 171 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~----~~~~~---~~~~ 171 (284)
..+|.++|.||||||||+|++++.+.. .+++.++.+.....+.+++.. +++.||+|...-. .+... .++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 368999999999999999999998766 778877777777788888865 6799999976432 22223 3578
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhHC---CCCceEEEEeCCCCCCC-C--CCCcccchHHHHHHHHHHcCCcEEEE
Q 023316 172 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVR-L--PPDLQWTIATQARAYAKAMKATLFFS 245 (284)
Q Consensus 172 ad~iilv~d~~~~~s~~~~~~~~~~l~~~~---~~~~~Ilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~a~~~~~~~~~~ 245 (284)
||++++|.|++++. ........+|..+. ...|++++.||.|...- + .........++.+.+...+.+..-.+
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 99999999998764 33344445555442 34566899999994100 0 00001122555666666665533332
Q ss_pred cCCCCcCHHHHHH
Q 023316 246 SATHNINVNKIFK 258 (284)
Q Consensus 246 Sa~~~~~v~~lf~ 258 (284)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 2334445555543
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.22 E-value=5.6e-11 Score=113.14 Aligned_cols=111 Identities=9% Similarity=0.009 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC------------------CCCCcc-----cccceeeeeEEEEECCeEEEEEEEeCC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN------------------EQERSL-----QMAGLNLINKTLMVQGARIAFSIWDVG 156 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~------------------~~~~~~-----~t~~~~~~~~~~~~~~~~~~l~l~Dt~ 156 (284)
.-+|+|+|..++|||||..+++.. .+.+.. ..+.+......+.+++ ..+.|.||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDTP 108 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDTP 108 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECCC
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeCC
Confidence 568999999999999999999521 111111 1222222333445555 567899999
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
|+.+|..-....++-+|++|+|+|+...-.-+...-|.... ++ ..|+|++.||+|.
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~-~~--~lp~i~fINK~Dr 164 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCR-MR--ATPVMTFVNKMDR 164 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHH-HT--TCCEEEEEECTTS
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHH-Hh--CCceEEEEecccc
Confidence 99999999999999999999999998876666666664443 32 4466899999995
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=114.33 Aligned_cols=87 Identities=14% Similarity=0.191 Sum_probs=52.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC-CcccccceeeeeEEEEECCe---------------EEEEEEEeCCCCcCCcc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~l~Dt~G~e~~~~ 163 (284)
.++|.++|.+|||||||+|++++..+. ..+++++.+.....+.+++. ...+++|||+|+.++..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999999998776 66675665555666666553 23589999999987553
Q ss_pred -------cccccccCCcEEEEEEeCCChhh
Q 023316 164 -------HVPIACKDAVAILFMFDLTSRCT 186 (284)
Q Consensus 164 -------~~~~~~~~ad~iilv~d~~~~~s 186 (284)
....+++++|++++|+|+++.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 23456789999999999986544
No 206
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.14 E-value=2.4e-11 Score=118.80 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=92.6
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccc------------------------------------------
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAG------------------------------------------ 133 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~------------------------------------------ 133 (284)
....+|+|+|.+++|||||+|++++..+. ..-.++.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 44679999999999999999999998762 2111110
Q ss_pred ------eeeeeEEEEEC-CeEEEEEEEeCCCCcCC-------------cccccccc-cCCcEEEEEEeCCChhhHHHHHH
Q 023316 134 ------LNLINKTLMVQ-GARIAFSIWDVGGDSRS-------------FDHVPIAC-KDAVAILFMFDLTSRCTLNSIVG 192 (284)
Q Consensus 134 ------~~~~~~~~~~~-~~~~~l~l~Dt~G~e~~-------------~~~~~~~~-~~ad~iilv~d~~~~~s~~~~~~ 192 (284)
+......+.+. .....+.|+||+|.... ..+...|+ ..+|++++|.|.+...+-++...
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00000111110 01123679999997552 12333344 58899999999987544333323
Q ss_pred HHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHH----cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023316 193 WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK-ATLFFSSATHNINVNKIFKFIMAK 263 (284)
Q Consensus 193 ~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~----~~-~~~~~~Sa~~~~~v~~lf~~l~~~ 263 (284)
++..+.. ...|.|+|.||+|+. +.... . .. ... .+. .+ .+++.+||++|.|++++++.+...
T Consensus 209 ll~~L~~--~g~pvIlVlNKiDlv---~~~~~-~-~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEVDP--QGQRTIGVITKLDLM---DEGTD-A-RD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHCT--TCSSEEEEEECTTSS---CTTCC-S-HH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHh--cCCCEEEEEeCcccC---Ccchh-h-HH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 4444432 134558999999973 22211 1 11 111 011 12 245569999999999999998873
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.11 E-value=2.7e-10 Score=102.10 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccch
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 227 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~ 227 (284)
..+.++||+|...-. ......+|.+++++|....+..+.+..+..+ .+.+++.||+|+. +.. ...
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl~---~~~--~~s 212 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADDG---DGE--RRA 212 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCSTT---CCH--HHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhcc---Cch--hHH
Confidence 457799999976422 1234789999999998654332222111111 1337777999951 111 111
Q ss_pred HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023316 228 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKL 264 (284)
Q Consensus 228 ~~~~~~~a~~----------~~~~~~~~Sa~~~~~v~~lf~~l~~~i 264 (284)
....+.+... ++.+++.+||+++.|++++++.+....
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1222333221 145788999999999999999988765
No 208
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=1.2e-09 Score=99.64 Aligned_cols=84 Identities=15% Similarity=0.235 Sum_probs=64.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCC-C-CcccccceeeeeEEEEECCeE---------------EEEEEEeCCCCcCCc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF 162 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~e~~~ 162 (284)
..+|.++|.+|||||||+|.+++... . ..+|.++.+.....+.+++.. ..+.+||++|.....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 57999999999999999999999876 4 677766666666777777621 357899999965422
Q ss_pred c-------cccccccCCcEEEEEEeCCC
Q 023316 163 D-------HVPIACKDAVAILFMFDLTS 183 (284)
Q Consensus 163 ~-------~~~~~~~~ad~iilv~d~~~ 183 (284)
. .....++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1 22334689999999999864
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.07 E-value=9.4e-11 Score=113.60 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC--CC------------CCccc---ccceeeeeEEEEECCeEEEEEEEeCCCCcCCcc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN--EQ------------ERSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 163 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~--~~------------~~~~~---t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~ 163 (284)
.+|+++|...+|||||..+++.. .. .+..+ .-|+++....+.+.-....+.|.||+|+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 36899999999999999998521 11 01000 013333333332322335578999999999999
Q ss_pred cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 164 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 164 ~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
.....++-+|++|+|+|+...-.-+...-|.... ++ ..|+|++.||+|.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~-~~--~lp~i~~INKmDr 131 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALR-KM--GIPTIFFINKIDQ 131 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHH-HH--TCSCEECCEECCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHH-Hc--CCCeEEEEecccc
Confidence 9999999999999999998765544444554433 33 3466899999995
No 210
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.01 E-value=3.8e-09 Score=103.60 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=78.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC--------C------CCCcc---cccceeeee--EEEEECC-----eEEEEEEEeC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN--------E------QERSL---QMAGLNLIN--KTLMVQG-----ARIAFSIWDV 155 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~--------~------~~~~~---~t~~~~~~~--~~~~~~~-----~~~~l~l~Dt 155 (284)
.-+|+|+|...+|||||..+|+.. + +.+.. .--|+++.+ .++.+.+ ..+.+.|.||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 458999999999999999998521 1 11110 111333333 2333332 3578999999
Q ss_pred CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
+|+.+|..-....++-+|++|+|+|+...-.-+...-|.+..+. +.|+|++.||+|.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr 149 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDR 149 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSS
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccc
Confidence 99999999999999999999999999887666665566555443 4567999999995
No 211
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.00 E-value=9.9e-11 Score=96.91 Aligned_cols=106 Identities=9% Similarity=0.072 Sum_probs=63.3
Q ss_pred CCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHh---HC--CCCce-EEEEeCC-CCCCCCCCCcccch
Q 023316 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK---WN--QTAIP-ILIGTKF-DDFVRLPPDLQWTI 227 (284)
Q Consensus 155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~---~~--~~~~~-Ilv~nK~-Dl~~~~~~~~~~~~ 227 (284)
.+||+.++.+|+.||.++|++|+|+|.+|++-++ ...-+.++.. .. ....| +|.+||. |+...++.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~------ 181 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------ 181 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCH------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCH------
Confidence 4589999999999999999999999999986544 3332322221 11 13344 6788995 65222211
Q ss_pred HHHHHHHH---HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 228 ATQARAYA---KAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 228 ~~~~~~~a---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
.+..+.+. ....+.++.|||.+|+|+.+.++|++..+..+
T Consensus 182 ~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 182 FYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 11111110 02345677899999999999999999877544
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=5.7e-10 Score=101.18 Aligned_cols=102 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred CCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHHH
Q 023316 157 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYA 235 (284)
Q Consensus 157 G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~a 235 (284)
.+++|+.+.+.+++.++++++|+|++++. ..|...+.++..+.|.|+|+||+|| ++.... ....+....++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL---~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADL---IPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGG---SCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhc---CCcccCHHHHHHHHHHHH
Confidence 56789999999999999999999999854 4677778777666677899999997 332211 11133344456
Q ss_pred HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 236 KAMKA---TLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 236 ~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
+..|. +++++||++|.|++++++.+......
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~ 160 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRGG 160 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhccc
Confidence 77787 78999999999999999999776533
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.85 E-value=1.8e-09 Score=97.98 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc-cchHHHHHHH
Q 023316 156 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAY 234 (284)
Q Consensus 156 ~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~ 234 (284)
..+++|+++...++..++++++|+|+++..+ .|..++.++..+.|.|+|+||+|| ++.... ....+....+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DL---l~~~~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADL---LPRSVKYPKLLRWMRRM 127 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGG---SCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhc---CCCccCHHHHHHHHHHH
Confidence 3588899999999999999999999999774 566666666666677899999997 333211 1123334445
Q ss_pred HHHcCC---cEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023316 235 AKAMKA---TLFFSSATHNINVNKIFKFIMAKLFN 266 (284)
Q Consensus 235 a~~~~~---~~~~~Sa~~~~~v~~lf~~l~~~i~~ 266 (284)
++..|. +++.+||++|.|++++++.+......
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 667776 68999999999999999999876543
No 214
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.85 E-value=1.4e-09 Score=94.21 Aligned_cols=107 Identities=7% Similarity=0.032 Sum_probs=68.1
Q ss_pred CCCCcCCcccccccccCCcEEEEEEeCCChhhHH---HHHHHHHHHHhH--CCCCceEEEEeC-CCCCCCCCCCcccchH
Q 023316 155 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN---SIVGWYSEARKW--NQTAIPILIGTK-FDDFVRLPPDLQWTIA 228 (284)
Q Consensus 155 t~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~---~~~~~~~~l~~~--~~~~~~Ilv~nK-~Dl~~~~~~~~~~~~~ 228 (284)
.+||+..+.+|+.||.++|++|+|+|.+|++-++ ++.+....+.+. ..+.|.+|.+|| .|+...++. .
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~------~ 267 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC------F 267 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH------H
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH------H
Confidence 4789999999999999999999999999987544 222221222121 134455688897 575222221 1
Q ss_pred HHHHHHH---HHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023316 229 TQARAYA---KAMKATLFFSSATHNINVNKIFKFIMAKLFNL 267 (284)
Q Consensus 229 ~~~~~~a---~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~~~ 267 (284)
+..+.+. ....+.+..|||.+|+|+.|.++|++..+..+
T Consensus 268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 1111110 01345677899999999999999999988554
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.46 E-value=5.8e-07 Score=82.50 Aligned_cols=142 Identities=12% Similarity=0.135 Sum_probs=69.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCC-ccc--ccceeeeeEEEEE--CCeEEEEEEEeCCCCcCCcc-----------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFD----------- 163 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~l~l~Dt~G~e~~~~----------- 163 (284)
.++++|+|.+|+|||||++.+.+..+.. ... +.+.......+.. .+....+.++|+.|......
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 4679999999999999999999875431 111 1111111111222 22234678999987643210
Q ss_pred ---cc----cc---------cccCCc---EEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcc
Q 023316 164 ---HV----PI---------ACKDAV---AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 164 ---~~----~~---------~~~~ad---~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
.+ .. ...+++ +++++.|....-+-.++ .++..+ ....++|+|.||+|. ++....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~---Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADA---ISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGG---SCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhc---cchHHH
Confidence 00 00 112332 35566666544333332 233333 334455899999995 332211
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCC
Q 023316 225 WTIATQARAYAKAMKATLFFSSAT 248 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~~Sa~ 248 (284)
....+..+.-.+..|++++.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 111233333334467888887753
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.42 E-value=1.2e-07 Score=89.12 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=83.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHh------cCCCC---C-cccc------------cceeeeeEEEE-------------EC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYV------GNEQE---R-SLQM------------AGLNLINKTLM-------------VQ 144 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~------~~~~~---~-~~~t------------~~~~~~~~~~~-------------~~ 144 (284)
...|+++|.+||||||+++++. +.+.. . .+.+ .++.+...... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999998 44321 1 1000 01221110000 00
Q ss_pred CeEEEEEEEeCCCCcCCcc-cccc---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCC
Q 023316 145 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV 217 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~-~~~~---~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~ 217 (284)
...+.+.|+||+|...... +... + +..+|.+++|+|.+...... .....+.+. .++ ++|.||+|..
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---~~i~gvVlNK~D~~- 253 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---VDVASVIVTKLDGH- 253 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---HCCCCEEEECTTSC-
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---cCceEEEEeCCccc-
Confidence 0234578999999875321 1111 1 22789999999997754321 122223221 243 6999999951
Q ss_pred CCCCCcccchHHHHHHHHHHcCCcE------------------EEEcCCCCcC-HHHHHHHHHHH
Q 023316 218 RLPPDLQWTIATQARAYAKAMKATL------------------FFSSATHNIN-VNKIFKFIMAK 263 (284)
Q Consensus 218 ~~~~~~~~~~~~~~~~~a~~~~~~~------------------~~~Sa~~~~~-v~~lf~~l~~~ 263 (284)
.. . ..+.......+.|+ +.+|+.+|.| +.++++++...
T Consensus 254 ---~~-~----g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 ---AK-G----GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ---CC-C----THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ---cc-h----HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 11 1 11222333445443 2368999999 99999888765
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=4.8e-08 Score=88.49 Aligned_cols=137 Identities=9% Similarity=0.094 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC------CCC-CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc-------
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP------- 166 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~------~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~------- 166 (284)
.+|+++|.+|+|||||+|++.+. ... ...+.++.+ ...+.++.. +.++||+|......+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 47999999999999999999986 222 344433322 223444332 67999999764332111
Q ss_pred -ccc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCce-EEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316 167 -IAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 167 -~~~--~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~-Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 242 (284)
.++ +..+.++++.+.....-+..+.. ++.+ .....| +++.||.|. -...........+.+..|..+
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l---~~~~~~~~~v~~k~d~------~~~~~~~~~~~~~~~~~g~~l 307 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI---KGGRRSFVCYMANELT------VHRTKLEKADSLYANQLGELL 307 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE---ESSSEEEEEEECTTSC------EEEEEGGGHHHHHHHHBTTTB
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-EEEc---cCCCceEEEEecCCcc------cccccHHHHHHHHHHhcCCcc
Confidence 122 67889999998743211111110 1111 122344 799999994 112222444555667777766
Q ss_pred EEEcCCCCcC
Q 023316 243 FFSSATHNIN 252 (284)
Q Consensus 243 ~~~Sa~~~~~ 252 (284)
...++.+..+
T Consensus 308 ~p~~~~~~~~ 317 (369)
T 3ec1_A 308 SPPSKRYAAE 317 (369)
T ss_dssp CSSCGGGTTT
T ss_pred CCCCchhhhh
Confidence 6656554433
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.34 E-value=1.9e-06 Score=78.96 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCC--Ccccccceeeee-EEEEECCeEEEEEEEeCCCCcCCcccccc-----cccCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLIN-KTLMVQGARIAFSIWDVGGDSRSFDHVPI-----ACKDA 172 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~-~~~~~~~~~~~l~l~Dt~G~e~~~~~~~~-----~~~~a 172 (284)
..++|+|++|+|||||+|.+.+-... .....-+.+... ..+.-....-.+.+||+.|.......... -+.+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 37999999999999999999984332 111111111100 11111111113678999986432111111 13344
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC------CCCCCCcccchHHHHHHHHH----HcC---
Q 023316 173 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF------VRLPPDLQWTIATQARAYAK----AMK--- 239 (284)
Q Consensus 173 d~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~------~~~~~~~~~~~~~~~~~~a~----~~~--- 239 (284)
+.+++ +|..... -+.+ .+...+... ..+.++|.||.|+. ..++...+....+..+++.+ +.|
T Consensus 150 ~~~~~-lS~G~~~-kqrv-~la~aL~~~--~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~ 224 (413)
T 1tq4_A 150 DFFII-ISATRFK-KNDI-DIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAE 224 (413)
T ss_dssp SEEEE-EESSCCC-HHHH-HHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CCeEE-eCCCCcc-HHHH-HHHHHHHhc--CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 55555 7765211 1111 122223221 34558999999952 12233333333445555542 332
Q ss_pred CcEEEEcC--CCCcCHHHHHHHHHHHHhCCccc
Q 023316 240 ATLFFSSA--THNINVNKIFKFIMAKLFNLPWT 270 (284)
Q Consensus 240 ~~~~~~Sa--~~~~~v~~lf~~l~~~i~~~~~~ 270 (284)
...+.+|+ .++.|++++.+.+...+.+.++.
T Consensus 225 ~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~ 257 (413)
T 1tq4_A 225 PPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRH 257 (413)
T ss_dssp CCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHH
T ss_pred CcEEEEecCcCCccCHHHHHHHHHHhCccchhh
Confidence 36788899 56667999999998887665543
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.32 E-value=1.2e-06 Score=75.89 Aligned_cols=138 Identities=13% Similarity=0.139 Sum_probs=70.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCC--Cccccccee----eeeEEEEE----CCeEEEEEEEeCCCCcCCcc------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLN----LINKTLMV----QGARIAFSIWDVGGDSRSFD------ 163 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~----~~~~~~~~----~~~~~~l~l~Dt~G~e~~~~------ 163 (284)
.++++|+|+.|+|||||++.+.+.... ....-.|.+ .....+.+ .+....+.++|+.|......
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 578999999999999999999875432 111000000 00011111 12223578999988532110
Q ss_pred -c---------------------ccccccCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCC
Q 023316 164 -H---------------------VPIACKDAVAILFMFDLT-SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 220 (284)
Q Consensus 164 -~---------------------~~~~~~~ad~iilv~d~~-~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~ 220 (284)
+ .+..+..+++.+++.|-. ..-+-.+ ...+..+.+ ....|+|.||+|. +.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~---lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADT---MT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGG---SC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEecccc---CC
Confidence 0 011223468888888854 2222222 234444443 2455899999995 33
Q ss_pred CCcccchHHHHHHHHHHcCCcEEE
Q 023316 221 PDLQWTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 221 ~~~~~~~~~~~~~~a~~~~~~~~~ 244 (284)
........+..+...+.+++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 222212234445555667777664
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.31 E-value=2.7e-07 Score=79.63 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
++++++|.+|||||||+|++.+.......++.|.+.....+.++. .+.+|||+|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 699999999999999999999887642222333333333333332 467999999865
No 221
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.29 E-value=3.7e-08 Score=89.22 Aligned_cols=133 Identities=9% Similarity=0.066 Sum_probs=72.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC------CC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcCCccccc----c-
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE------QE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP----I- 167 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~~~~~~~----~- 167 (284)
.+|+++|.+|+|||||+|++.+.. .. ...+.++ .....+.+++. +.++||+|......+.. .
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 579999999999999999998853 11 2233222 22233444332 67999999865432211 1
Q ss_pred ---c--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023316 168 ---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 242 (284)
Q Consensus 168 ---~--~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~ 242 (284)
+ .+..+.++++.|.....-+..+.. ++.+. ....+.+++.||.|. -...........+.+..|..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~------~~~~~~~~~~~~~~~~~g~~l 306 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLT------IHRTKLEKADELYKNHAGDLL 306 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEHHHHHHHHHHHBTTTB
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccc------cccccHHHHHHHHHHHhCCcc
Confidence 1 256778888887632211111110 01111 112344799999994 122223444555666677655
Q ss_pred EEEcC
Q 023316 243 FFSSA 247 (284)
Q Consensus 243 ~~~Sa 247 (284)
+..++
T Consensus 307 ~p~~~ 311 (368)
T 3h2y_A 307 SPPTP 311 (368)
T ss_dssp CSSCH
T ss_pred CCCch
Confidence 54444
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.22 E-value=1.1e-06 Score=76.53 Aligned_cols=98 Identities=12% Similarity=0.002 Sum_probs=67.0
Q ss_pred eCCCCcC-CcccccccccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHH
Q 023316 154 DVGGDSR-SFDHVPIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 230 (284)
Q Consensus 154 Dt~G~e~-~~~~~~~~~~~ad~iilv~d~~~~~s~~--~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~ 230 (284)
..+|+.. ........+..+|+++.|+|+.++.+.. .+..|+ ...+.++|+||+|| .+. ...+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL---~~~----~~~~~ 70 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADK---ADA----AVTQQ 70 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGG---SCH----HHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECccc---CCH----HHHHH
Confidence 4577653 3344555789999999999999987764 344443 45566999999997 221 11223
Q ss_pred HHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023316 231 ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 265 (284)
Q Consensus 231 ~~~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~~i~ 265 (284)
..++.+..+.+++.+||+++.|++++++.+...+.
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 34444556789999999999999999998877664
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=1.2e-06 Score=76.44 Aligned_cols=57 Identities=11% Similarity=0.122 Sum_probs=36.5
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcCCCC--CcccccceeeeeEEEEECCeEEEEEEEeCCCCcC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 160 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~ 160 (284)
..++|+++|.+|||||||+|++.+.... ...+.++.+.. .+.++. .+.+|||+|...
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~~ 177 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGILW 177 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCCC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcCC
Confidence 3689999999999999999999987744 44443322222 233332 367999999854
No 224
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.05 E-value=4.6e-08 Score=91.41 Aligned_cols=101 Identities=12% Similarity=0.007 Sum_probs=64.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcCCCCCcccccceeeeeEEEEECCeEEEEEEEeCCCCcC--Ccccc--------cccc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHV--------PIAC 169 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~e~--~~~~~--------~~~~ 169 (284)
.++|+++|.+|+||||+.++|...-.....++.+++.........+......+||..|++. .+..+ ..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l 118 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL 118 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999987542212222333221111111112223346899999843 23332 5567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC
Q 023316 170 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 201 (284)
Q Consensus 170 ~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~ 201 (284)
..+.+.++|+|.++. +.+....|++.+++..
T Consensus 119 ~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 119 SEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 678899999999987 5677778888777653
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.91 E-value=1.8e-05 Score=72.87 Aligned_cols=141 Identities=16% Similarity=0.116 Sum_probs=77.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc------CCCC----Cccc------------ccceeeeeEEEEEC-------------
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG------NEQE----RSLQ------------MAGLNLINKTLMVQ------------- 144 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~------~~~~----~~~~------------t~~~~~~~~~~~~~------------- 144 (284)
...|+++|.+|+||||++..+.. .+.. +.+. ..+..+.......+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998862 2211 1110 01111111000000
Q ss_pred CeEEEEEEEeCCCCcCCcc-----ccc-ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCC
Q 023316 145 GARIAFSIWDVGGDSRSFD-----HVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 218 (284)
Q Consensus 145 ~~~~~l~l~Dt~G~e~~~~-----~~~-~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~ 218 (284)
...+.+.|.||+|...... +.. .....+|.+++|.|.+....-.+ ....+.+. -.+..+|.||+|.
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~--- 251 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDG--- 251 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSS---
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCC---
Confidence 0125677999999654321 111 11236789999999876433222 22233221 2233699999994
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. . ....+.......+.|+.+++. |++++++
T Consensus 252 ---~-~--~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 252 ---S-A--KGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp ---C-S--SHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred ---c-c--cccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 1 1 123345556678899888775 6665443
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.77 E-value=2.2e-05 Score=74.99 Aligned_cols=64 Identities=14% Similarity=0.095 Sum_probs=39.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcCCCCCccc-cc-ceeeeeEEE--EE-CCeEEEEEEEeCCCCcCC
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQ-MA-GLNLINKTL--MV-QGARIAFSIWDVGGDSRS 161 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~~~~~~~~-t~-~~~~~~~~~--~~-~~~~~~l~l~Dt~G~e~~ 161 (284)
....+|+|+|.+|||||||+|++.+....-..+ ++ +.....+.+ .+ ......+.++||+|....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 346889999999999999999999987431122 11 111111111 11 112234679999998653
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.76 E-value=2.9e-05 Score=71.59 Aligned_cols=84 Identities=17% Similarity=0.069 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCcCCcc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCC-c-eEEEEeCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-I-PILIGTKFDDFVRL 219 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~-~-~Ilv~nK~Dl~~~~ 219 (284)
+.+.|.||+|...... +.. ..+..+|.+++|.|.+.... .......+ .... + ..+|.||+|.
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~~~~~~i~gvVlnK~D~---- 250 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---KEAVGEIGSIIVTKLDG---- 250 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---HTTSCSCEEEEEECSSS----
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---hhcccCCeEEEEeCCCC----
Confidence 4577999999765311 111 11236899999999865432 22222222 2233 4 3699999994
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEc
Q 023316 220 PPDLQWTIATQARAYAKAMKATLFFSS 246 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~~~~~~~S 246 (284)
.. . ...+..+....+.++.+++
T Consensus 251 ~~---~--~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 251 SA---K--GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp CS---T--THHHHHHHHHSSCCEEEEC
T ss_pred cc---c--hHHHHHHHHHHCCCEEEee
Confidence 11 1 1223446667787776653
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.68 E-value=3.4e-05 Score=67.63 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCcC--Ccc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCCCCC
Q 023316 148 IAFSIWDVGGDSR--SFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVR 218 (284)
Q Consensus 148 ~~l~l~Dt~G~e~--~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl~~~ 218 (284)
+.+.+.||+|... ... +.. .....+|.+++|.|.+... +.......+.. ..+ ..+|.||.|.
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~~i~gvVlnk~D~--- 251 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---ASKIGTIIITKMDG--- 251 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TCTTEEEEEECGGG---
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hCCCCEEEEeCCCC---
Confidence 4577999999876 311 111 1234789999999986432 22222233322 233 3589999993
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 219 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 219 ~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .....+..++...+.++.+++ +|++++++
T Consensus 252 -~-----~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 252 -T-----AKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -C-----TTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred -C-----cchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 1 113345567778899988876 57777654
No 229
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=2.9e-05 Score=68.33 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=61.3
Q ss_pred CCcccccccccCCcEEEEEEeCCChhh-HHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHc
Q 023316 160 RSFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 238 (284)
Q Consensus 160 ~~~~~~~~~~~~ad~iilv~d~~~~~s-~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~ 238 (284)
+...+.+....++|.+++|+|+.++.. ...+.+++..+. ....+|+||.||+|| .++.......+...++.+..
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL---~~~~~~~~~~~~~~~~y~~~ 149 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNI 149 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCcc---CchhhhHHHHHHHHHHHHhC
Confidence 334455567889999999999987654 444455554332 345677999999997 22211000123334444556
Q ss_pred CCcEEEEcCCCCcCHHHHHH
Q 023316 239 KATLFFSSATHNINVNKIFK 258 (284)
Q Consensus 239 ~~~~~~~Sa~~~~~v~~lf~ 258 (284)
|.+.+.+||.++.|+++++.
T Consensus 150 g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 150 GYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp TCCEEECCHHHHTTCTTTGG
T ss_pred CCeEEEEecCCCCCHHHHHh
Confidence 88999999999888776654
No 230
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.58 E-value=3.4e-05 Score=66.34 Aligned_cols=90 Identities=8% Similarity=0.017 Sum_probs=59.1
Q ss_pred CCCcCC-cccccccccCCcEEEEEEeCCChhhHHH--HHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHH
Q 023316 156 GGDSRS-FDHVPIACKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR 232 (284)
Q Consensus 156 ~G~e~~-~~~~~~~~~~ad~iilv~d~~~~~s~~~--~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~ 232 (284)
+|+... .......+.++|++|+|+|+.++.+..+ +. |+ ..++|+|.||+|| .+. ...+...
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL---~~~----~~~~~~~ 68 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDI---ADE----KTTKKWV 68 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGG---SCH----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccC---CCH----HHHHHHH
Confidence 555432 2344556789999999999998876542 22 21 4566999999997 221 1122334
Q ss_pred HHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023316 233 AYAKAMKATLFFSSATHNINVNKIFKFIMA 262 (284)
Q Consensus 233 ~~a~~~~~~~~~~Sa~~~~~v~~lf~~l~~ 262 (284)
++.++.|.++ .+||+++.|++++++.+..
T Consensus 69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4455568888 9999999999998877643
No 231
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=5.1e-05 Score=69.82 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCcCC--c-ccccc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRS--F-DHVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 219 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~--~-~~~~~-----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~ 219 (284)
+.+.+.||+|...+ . .+... ..-..+.+++|.|.+...... .....+.+. -.+-.+|.||.|.
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~--~~~~gVIlTKlD~---- 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQA--SPIGSVIITKMDG---- 250 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHH--CSSEEEEEECGGG----
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhcc--cCCcEEEEecccc----
Confidence 45679999996441 1 11110 112568999999987653322 222333322 1234799999993
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023316 220 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 254 (284)
Q Consensus 220 ~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~ 254 (284)
. . ....+.......+.|+.+++. |++++
T Consensus 251 --~-a--~~G~als~~~~~g~Pi~fig~--Ge~v~ 278 (433)
T 3kl4_A 251 --T-A--KGGGALSAVVATGATIKFIGT--GEKID 278 (433)
T ss_dssp --C-S--CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred --c-c--cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence 1 1 133455666677999888776 66653
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.27 E-value=0.0012 Score=59.16 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=55.3
Q ss_pred cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023316 168 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 247 (284)
Q Consensus 168 ~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa 247 (284)
...++|.+++|....-.-+...+..++-..... ..+||||.||+|| .+++ .....++.....+..|.+.+.+||
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL---~~~~-~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDL---LDDE-GMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGG---CCHH-HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccC---CCch-hHHHHHHHHHHHHhCCCcEEEEec
Confidence 468999999887654223445556666544332 5677999999997 2221 100012222333456889999999
Q ss_pred CCCcCHHHHHHH
Q 023316 248 THNINVNKIFKF 259 (284)
Q Consensus 248 ~~~~~v~~lf~~ 259 (284)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999987654
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.23 E-value=0.0003 Score=62.45 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=53.2
Q ss_pred EEEEeCCCCcCCccc-ccc-----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCCCc
Q 023316 150 FSIWDVGGDSRSFDH-VPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 223 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~-~~~-----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~~~ 223 (284)
+.+.||+|....... ... ..-..|-.+++.|.+... ++......+.+. ..+-+++.||.|. .
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~------~- 281 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDA------D- 281 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGG------C-
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCC------c-
Confidence 457899997653221 111 012468889999976543 333333333322 2344899999992 1
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 224 QWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 224 ~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
.. ...+...+...+.++.+++ +|++++++
T Consensus 282 a~--~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 282 AR--GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp SC--CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred cc--hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 11 2334566777799988877 67777654
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.89 E-value=0.0011 Score=61.28 Aligned_cols=64 Identities=17% Similarity=0.304 Sum_probs=40.3
Q ss_pred ceeeEEEEEcCCCCChHHHHHHHhcC------------------CCC-C-c-c-cccceeeeeEEEEE---CCeEEEEEE
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKYVGN------------------EQE-R-S-L-QMAGLNLINKTLMV---QGARIAFSI 152 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l~~~------------------~~~-~-~-~-~t~~~~~~~~~~~~---~~~~~~l~l 152 (284)
....-|+|+|.+++|||+|+|.+++. .|. . . . .|.|+-.....+.. ++....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34556889999999999999999863 222 1 0 1 13343222111111 455678889
Q ss_pred EeCCCCcCC
Q 023316 153 WDVGGDSRS 161 (284)
Q Consensus 153 ~Dt~G~e~~ 161 (284)
.||.|...-
T Consensus 145 lDTeG~~~~ 153 (447)
T 3q5d_A 145 MDTQGTFDS 153 (447)
T ss_dssp EEEECCCSS
T ss_pred EcCCccccc
Confidence 999997653
No 235
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.75 E-value=0.0012 Score=63.42 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.|+|+|+.|+|||||++.+.|-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999998864
No 236
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.55 E-value=0.00063 Score=55.34 Aligned_cols=84 Identities=12% Similarity=-0.027 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCC---CCceEEEEeCCCCCCCCCCCcc
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~---~~~~Ilv~nK~Dl~~~~~~~~~ 224 (284)
+.+.|+|+++.. .......+..+|.+|++...+... ..+..+++.+.+... ..+..+|.|+.|. . .
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~------~-~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE------M-A 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT------T-E
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC------C-c
Confidence 567899999876 344455667899999999875443 666666666665432 2233599999992 1 1
Q ss_pred cchHHHHHHHHHHcCCcEE
Q 023316 225 WTIATQARAYAKAMKATLF 243 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~ 243 (284)
. ...+..++.+.++.+++
T Consensus 145 ~-~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 145 T-MLNVLKESIKDTGVKAF 162 (206)
T ss_dssp E-EEHHHHHHHHHHTCCBC
T ss_pred h-HHHHHHHHHHHcCCcee
Confidence 1 12344555555665554
No 237
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.50 E-value=0.0014 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999998764
No 238
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.49 E-value=0.0023 Score=52.62 Aligned_cols=63 Identities=6% Similarity=-0.020 Sum_probs=43.9
Q ss_pred EEEEEEeCCCC-cCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 148 IAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 148 ~~l~l~Dt~G~-e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
+.+.+.|+++. .. ......+..+|.+|++...+ ..+...+...++.+.+.. ..+..+|.|+.|
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~ 131 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIP 131 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBC
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecC
Confidence 55779999887 43 23445677899999998764 556677777777776533 233459999999
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.16 E-value=0.0026 Score=50.89 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|+|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.07 E-value=0.0031 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|++|+|||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999763
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.94 E-value=0.021 Score=52.42 Aligned_cols=62 Identities=16% Similarity=0.099 Sum_probs=36.0
Q ss_pred EEEEEEeCCCCcCCcc-ccc-----ccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCc-eEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~~-----~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~-~Ilv~nK~Dl 215 (284)
+.+.|.||+|...... +.. .....++.+++|.|.+.... .......+.. ..+ .-+|.||.|.
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~---~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE---ALPLTGVVLTKVDG 252 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH---HSCCCCEEEECTTS
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc---cCCCeEEEEecCCC
Confidence 4577999999765421 111 12347889999999875432 2222223322 122 2489999993
No 242
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.90 E-value=0.011 Score=54.30 Aligned_cols=62 Identities=18% Similarity=0.305 Sum_probs=40.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHh------------------cCCCC---Cccc-ccceeeeeEEEEE---CCeEEEEEEEe
Q 023316 100 SLKISLLGDCQIGKTSFVVKYV------------------GNEQE---RSLQ-MAGLNLINKTLMV---QGARIAFSIWD 154 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~------------------~~~~~---~~~~-t~~~~~~~~~~~~---~~~~~~l~l~D 154 (284)
..=|+|+|..++|||+|+|.++ ...|. ...+ |.|+-.....+.+ +|..+.+.+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 3446699999999999999553 12343 1122 6666544333322 57788899999
Q ss_pred CCCCcCC
Q 023316 155 VGGDSRS 161 (284)
Q Consensus 155 t~G~e~~ 161 (284)
|.|....
T Consensus 147 TEG~~d~ 153 (457)
T 4ido_A 147 TQGTFDS 153 (457)
T ss_dssp ECCBTCT
T ss_pred ccCCCCc
Confidence 9996543
No 243
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.87 E-value=0.0062 Score=53.14 Aligned_cols=20 Identities=25% Similarity=0.399 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
-++++|.+|+|||||+|.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999999998
No 244
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.85 E-value=0.0043 Score=49.89 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
++|+|++|+|||||++.+.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999864
No 245
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.84 E-value=0.079 Score=45.82 Aligned_cols=83 Identities=8% Similarity=0.013 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHC--CCCceE-EEEeCCCCCCCCCCCcc
Q 023316 148 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPI-LIGTKFDDFVRLPPDLQ 224 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~--~~~~~I-lv~nK~Dl~~~~~~~~~ 224 (284)
+.+.|.||++.-.... ....+..+|.+|++... +..++..+..+++.+.... .....+ +|.|+.+- .
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-------~- 226 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------T- 226 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC-------C-
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc-------H-
Confidence 5677999977543221 23456789999999865 4566777777777776542 222334 89999982 1
Q ss_pred cchHHHHHHHHHHcCCcEEE
Q 023316 225 WTIATQARAYAKAMKATLFF 244 (284)
Q Consensus 225 ~~~~~~~~~~a~~~~~~~~~ 244 (284)
+..+++.+.++.+++.
T Consensus 227 ----~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 ----DEVDRFCKETNFRRLA 242 (307)
T ss_dssp ----HHHHHHHHHHTCCEEE
T ss_pred ----HHHHHHHHHcCCCcee
Confidence 2345556666766554
No 246
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.84 E-value=0.0044 Score=50.21 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|+|++|+|||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999874
No 247
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.84 E-value=0.0043 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|+|+|.+|+|||||++.+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 248
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.82 E-value=0.0045 Score=50.67 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|++|+|||||++.+.+-.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998753
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.78 E-value=0.0044 Score=49.21 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
-++++|.+|+|||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999755
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.74 E-value=0.0053 Score=50.25 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
--|+|+|++|+|||||++.+.+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhh
Confidence 35889999999999999999864
No 251
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.73 E-value=0.0051 Score=51.13 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|+.|+|||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.67 E-value=0.0055 Score=50.72 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999998743
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.61 E-value=0.0064 Score=47.88 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999999999998765
No 254
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.61 E-value=0.0064 Score=49.76 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
...|.|+|.+|+|||||++.+.+-
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988653
No 255
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.50 E-value=0.0069 Score=54.21 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~ 125 (284)
.++|+|.+|||||||+|.+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999998654
No 256
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.49 E-value=0.0072 Score=49.54 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-|+|+|++|+|||||++.+.+..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999998753
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.47 E-value=0.0076 Score=48.83 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
|+|+|++|||||||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
No 258
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.42 E-value=0.0076 Score=50.61 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998743
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.34 E-value=0.0089 Score=46.98 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|+|+|.+|+|||||.+.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998653
No 260
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.31 E-value=0.0084 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+++++|.+|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999998763
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.30 E-value=0.0084 Score=49.95 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37799999999999999987753
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.28 E-value=0.0093 Score=47.76 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++|+|.+|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 263
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.26 E-value=0.0093 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcCC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
..|+|+|.+|+|||||++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999997754
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.25 E-value=0.0095 Score=48.50 Aligned_cols=23 Identities=17% Similarity=0.379 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.-|+|+|.+|||||||++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998753
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.24 E-value=0.0099 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.19 E-value=0.01 Score=50.76 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|+.|+|||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
No 267
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.18 E-value=0.01 Score=48.12 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.|+|+|.+|+|||||++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999864
No 268
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.18 E-value=0.01 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999999875
No 269
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.18 E-value=0.011 Score=49.52 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 023316 101 LKISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~ 121 (284)
..|+|+|.+|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 270
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.16 E-value=0.011 Score=46.33 Aligned_cols=21 Identities=24% Similarity=0.048 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999864
No 271
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.14 E-value=0.0091 Score=47.47 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 272
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.13 E-value=0.011 Score=46.06 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=17.9
Q ss_pred EEEEEcCCCCChHHHHHHH
Q 023316 102 KISLLGDCQIGKTSFVVKY 120 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l 120 (284)
-|+|.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 273
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.12 E-value=0.012 Score=49.52 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999775
No 274
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.11 E-value=0.012 Score=46.46 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 275
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.10 E-value=0.011 Score=50.36 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 276
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.09 E-value=0.012 Score=49.55 Aligned_cols=23 Identities=17% Similarity=0.095 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 277
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.08 E-value=0.011 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37799999999999999998743
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.07 E-value=0.012 Score=49.73 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 279
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.06 E-value=0.01 Score=51.62 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNEQ 125 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~~ 125 (284)
.++++|++|+|||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987543
No 280
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.06 E-value=0.012 Score=48.08 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 281
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.05 E-value=0.01 Score=48.89 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 282
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.03 E-value=0.013 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 283
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.01 E-value=0.012 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 3779999999999999999875
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.00 E-value=0.012 Score=50.40 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37799999999999999998753
No 285
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.99 E-value=0.012 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 286
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.98 E-value=0.013 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+|.|.+|+||||+...|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999854
No 287
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.97 E-value=0.013 Score=47.74 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..|.|+|..|+|||||++.+.+-
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998763
No 288
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.97 E-value=0.013 Score=49.73 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999875
No 289
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.95 E-value=0.014 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+.+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999998865
No 290
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.94 E-value=0.013 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
No 291
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.93 E-value=0.013 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999875
No 292
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.91 E-value=0.012 Score=48.25 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|+|++|+|||||++.+.+.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999874
No 293
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.91 E-value=0.0047 Score=54.13 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|.+|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 78999999999999999998754
No 294
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.90 E-value=0.018 Score=45.38 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.|+|+|.+|+||||+++.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.90 E-value=0.014 Score=49.97 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999999885
No 296
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.88 E-value=0.015 Score=47.03 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.|+++|.+|+||||+...+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998863
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.88 E-value=0.014 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+|+|+|.+|+||||+.+.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999876
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.87 E-value=0.015 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47799999999999999998753
No 299
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.86 E-value=0.015 Score=49.59 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4789999999999999999874
No 300
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.86 E-value=0.014 Score=50.17 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47799999999999999998753
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.86 E-value=0.014 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|+|.+|+||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 302
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.86 E-value=0.015 Score=46.51 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++++|.+|+|||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999864
No 303
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.83 E-value=0.015 Score=48.41 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
-++|+|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.81 E-value=0.015 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998763
No 305
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.80 E-value=0.016 Score=47.62 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+++|+||+||+|...++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988864
No 306
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.80 E-value=0.015 Score=50.79 Aligned_cols=21 Identities=14% Similarity=0.324 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.++|+|++|+|||||++.+.+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999999875
No 307
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=94.79 E-value=0.05 Score=45.09 Aligned_cols=64 Identities=8% Similarity=-0.002 Sum_probs=43.8
Q ss_pred EEEEEEEeCCCCcCCcccccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 147 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 147 ~~~l~l~Dt~G~e~~~~~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
.+.+.|+|+++.-.. .....+..+|.+|++.+.+ ..++..+..+.+.+.+... ....+|.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~~-~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLGI-KKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHTC-SCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcCC-ccEEEEEeCCC
Confidence 456789999875433 4455678899999999764 5666676666665554433 23358999998
No 308
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.78 E-value=0.015 Score=49.39 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998753
No 309
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.75 E-value=0.018 Score=45.84 Aligned_cols=21 Identities=19% Similarity=0.134 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+.+.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.74 E-value=0.016 Score=45.64 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|+|.|.+|+||||+.+.+..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 311
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.73 E-value=0.015 Score=49.66 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998753
No 312
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.71 E-value=0.011 Score=48.98 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=14.8
Q ss_pred EEEEEcCCCCChHHHHHHHh-cC
Q 023316 102 KISLLGDCQIGKTSFVVKYV-GN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~-~~ 123 (284)
-|+|+|+.|+|||||++.+. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999998 54
No 313
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.71 E-value=0.016 Score=46.90 Aligned_cols=22 Identities=18% Similarity=0.141 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
--|+|+|.+|+|||||.+.+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998865
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.65 E-value=0.019 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+|.|+|.+|+||||+.+.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.65 E-value=0.019 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 316
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.61 E-value=0.015 Score=52.03 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.-+++|+|.+|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 317
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.61 E-value=0.022 Score=46.10 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+.|+|.|.+|+||||+.+.+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998854
No 318
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.61 E-value=0.019 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.+++.|++|+|||+|++.+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988653
No 319
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.60 E-value=0.015 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-+.++|++|+|||+|++.+.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 320
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.57 E-value=0.018 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.49 E-value=0.019 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..-|.|+|.+|+|||||++.+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 45788999999999999999876
No 322
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.49 E-value=0.022 Score=45.28 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998854
No 323
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.47 E-value=0.024 Score=44.98 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+++|.+|+||||+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999863
No 324
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.42 E-value=0.025 Score=45.81 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
+.|.|+|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.40 E-value=0.023 Score=45.07 Aligned_cols=22 Identities=32% Similarity=0.291 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+++|.+|+||||+...+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.38 E-value=0.02 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999864
No 327
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.38 E-value=0.011 Score=47.21 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|.|+|.+|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998763
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.37 E-value=0.021 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999775
No 329
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.34 E-value=0.022 Score=47.84 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 330
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.33 E-value=0.021 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|+.|+|||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 331
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.31 E-value=0.022 Score=48.89 Aligned_cols=21 Identities=24% Similarity=0.240 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999998763
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.25 E-value=0.023 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 36799999999999999998754
No 333
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.23 E-value=0.029 Score=45.32 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.23 E-value=0.027 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+|.|.+|+||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 335
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.19 E-value=0.024 Score=49.51 Aligned_cols=91 Identities=10% Similarity=0.091 Sum_probs=49.9
Q ss_pred EEEEeCCCCcCCcc------------cccccccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCC
Q 023316 150 FSIWDVGGDSRSFD------------HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 217 (284)
Q Consensus 150 l~l~Dt~G~e~~~~------------~~~~~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~ 217 (284)
+.+.||+|...... +.+......+.++++.|.+..... ...+..+.+. ....+++.||.|..
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~~---~~~~~~~~~~--~~~t~iivTh~d~~- 260 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG---LEQAKKFHEA--VGLTGVIVTKLDGT- 260 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH---HHHHHHHHHH--HCCSEEEEECTTSS-
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHHH---HHHHHHHHHH--cCCcEEEEECCccc-
Confidence 45889999654221 111223457778889998765432 2223333221 13458999999831
Q ss_pred CCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 218 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 218 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. . ...+.......+.++.+++ +|++++++
T Consensus 261 ---a--~---gg~~l~i~~~~~~pi~~ig--~Ge~~~dl 289 (304)
T 1rj9_A 261 ---A--K---GGVLIPIVRTLKVPIKFVG--VGEGPDDL 289 (304)
T ss_dssp ---C--C---CTTHHHHHHHHCCCEEEEE--CSSSTTCE
T ss_pred ---c--c---ccHHHHHHHHHCCCeEEEe--CCCChhhc
Confidence 1 1 1123455666788887765 35555443
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.17 E-value=0.025 Score=44.66 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
+|+|+|.+|+||||+...+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999988854
No 337
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.17 E-value=0.031 Score=44.47 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+|.|.+|+||||+...+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999988754
No 338
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.17 E-value=0.025 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 37899999999999999998754
No 339
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.17 E-value=0.025 Score=50.62 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 37899999999999999998754
No 340
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.17 E-value=0.028 Score=46.19 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+.|+|+|.+|+||||+.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 341
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.15 E-value=0.017 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTS
T ss_pred EEEEECCCCchHHHHHHHHHcC
Confidence 5889999999999999998764
No 342
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.14 E-value=0.026 Score=46.25 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++++|++|+|||||+..+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999999743
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.11 E-value=0.026 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 37899999999999999998754
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.06 E-value=0.037 Score=44.82 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+|.|.+|+||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 345
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.05 E-value=0.027 Score=50.65 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|+.|+|||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 37799999999999999998754
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.03 E-value=0.033 Score=46.77 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.++|+|.|.+|+||||+...|..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999864
No 347
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.02 E-value=0.028 Score=50.52 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 37799999999999999998754
No 348
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.01 E-value=0.028 Score=50.33 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhcCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~ 124 (284)
+.|+|+.|+|||||++.+.+-.
T Consensus 57 ~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHhcCC
Confidence 6799999999999999998754
No 349
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.00 E-value=0.031 Score=46.20 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
+.|+|.|.+|+||||+.+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 350
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.98 E-value=0.028 Score=49.01 Aligned_cols=89 Identities=18% Similarity=0.131 Sum_probs=48.2
Q ss_pred EEEEeCCCCcCCcc------------cccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 150 FSIWDVGGDSRSFD------------HVPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 150 l~l~Dt~G~e~~~~------------~~~~~~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
..+.|++|...... +........+-++++.|.+.. +....+ ..+.+. ....+++.||.|-
T Consensus 186 ~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~~----~~~~~~--~g~t~iiiThlD~- 258 (302)
T 3b9q_A 186 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGITGLILTKLDG- 258 (302)
T ss_dssp EEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCCCEEEEECCSS-
T ss_pred chHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHHH----HHHHHh--cCCCEEEEeCCCC-
Confidence 45789999765321 111123457777888886543 233222 222221 2345888999882
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023316 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 255 (284)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~ 255 (284)
. . .-......+...+.++..+.. |+.+++
T Consensus 259 -----~-~--~~g~~l~~~~~~~~pi~~i~~--Ge~~~d 287 (302)
T 3b9q_A 259 -----S-A--RGGCVVSVVEELGIPVKFIGV--GEAVED 287 (302)
T ss_dssp -----C-S--CTHHHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred -----C-C--ccChheehHHHHCCCEEEEeC--CCChhh
Confidence 1 1 133455666777877776543 444443
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.97 E-value=0.029 Score=47.05 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|.|+|..|+|||||++.+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999866
No 352
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.94 E-value=0.031 Score=46.16 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998863
No 353
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.91 E-value=0.035 Score=45.03 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
...|.|+|.+|+|||||++.+.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998764
No 354
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.85 E-value=0.035 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..|+|+|.+|+||||+.+.|...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988654
No 355
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.84 E-value=0.034 Score=44.32 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+++|.+|+||||+.+.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999998864
No 356
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.83 E-value=0.034 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred ceeeEEEEEcCCCCChHHHHHHH
Q 023316 98 LVSLKISLLGDCQIGKTSFVVKY 120 (284)
Q Consensus 98 ~~~~KI~llG~~~vGKSsLl~~l 120 (284)
....||+|+|.+++|||||+.++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 34689999999999999999986
No 357
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.83 E-value=0.03 Score=50.01 Aligned_cols=22 Identities=14% Similarity=0.220 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|+|+|+.|+|||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998763
No 358
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.82 E-value=0.033 Score=44.07 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|++.|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999998863
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.80 E-value=0.035 Score=44.12 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|.++|.+|+|||||+.++..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 360
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.80 E-value=0.032 Score=47.62 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 899999999999999998764
No 361
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.78 E-value=0.038 Score=44.43 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..|+|.|.+|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 362
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.74 E-value=0.032 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.155 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-|+|.|.+|+|||||...+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999964
No 363
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.73 E-value=0.025 Score=44.37 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|.|++|+|||+|+..+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988653
No 364
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.72 E-value=0.033 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3889999999999999998764
No 365
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.71 E-value=0.035 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|+|+|.+|+|||||...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999999854
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.69 E-value=0.038 Score=43.93 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 367
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.67 E-value=0.03 Score=46.01 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998854
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.67 E-value=0.036 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
++|+|+|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999998854
No 369
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.66 E-value=0.035 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|.|+|.+|+|||||++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 370
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.66 E-value=0.032 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|+|.+|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.65 E-value=0.023 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998754
No 372
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.60 E-value=0.037 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.+++.|++|+|||+|+..+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 373
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.59 E-value=0.038 Score=44.96 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.56 E-value=0.034 Score=49.05 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|..|+|||||++.+.+--
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.52 E-value=0.043 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|++.|.+|+||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 376
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.52 E-value=0.036 Score=50.16 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|+.|+|||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 377
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.52 E-value=0.04 Score=45.58 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|+|++|+|||||+..+.+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 378
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.52 E-value=0.059 Score=43.40 Aligned_cols=22 Identities=32% Similarity=0.247 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988863
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.51 E-value=0.036 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|.|+|..|+|||||++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999876
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.48 E-value=0.016 Score=47.14 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|+|.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999864
No 381
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.48 E-value=0.046 Score=45.33 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..-|+|.|..|+|||||++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999998764
No 382
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.45 E-value=0.036 Score=49.51 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++|+|..|+|||||++.+.+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999874
No 383
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.44 E-value=0.042 Score=43.82 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998853
No 384
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.44 E-value=0.043 Score=43.91 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999988854
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.43 E-value=0.038 Score=49.62 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|+|++|+|||||++.+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999976
No 386
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.40 E-value=0.043 Score=44.22 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
--+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988653
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.38 E-value=0.045 Score=42.76 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 388
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.33 E-value=0.043 Score=46.10 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|++.|++|+|||+|++.+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 499999999999999999865
No 389
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.32 E-value=0.043 Score=48.80 Aligned_cols=23 Identities=13% Similarity=0.388 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
++.++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999998864
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.32 E-value=0.048 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|+|.+|+||||+.+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998854
No 391
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.30 E-value=0.044 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
No 392
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.28 E-value=0.052 Score=43.53 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
...|+|.|.+|+||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999998764
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.27 E-value=0.044 Score=48.19 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+-|.|+|.+|+|||||++.+.+
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999988854
No 394
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.26 E-value=0.048 Score=45.18 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=18.0
Q ss_pred eE-EEEEcCCCCChHHHHHHHhc
Q 023316 101 LK-ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~K-I~llG~~~vGKSsLl~~l~~ 122 (284)
.| |+|+|.||+||+|...++..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35 45789999999999888864
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.25 E-value=0.049 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|++.|.+|+||||+.+.+.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.24 E-value=0.044 Score=48.99 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=49.2
Q ss_pred EEEEeCCCCcCCccc------------ccccccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhHCCCCceEEEEeCCCCC
Q 023316 150 FSIWDVGGDSRSFDH------------VPIACKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 216 (284)
Q Consensus 150 l~l~Dt~G~e~~~~~------------~~~~~~~ad~iilv~d~~~~-~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~ 216 (284)
..+.|++|....... ........+-++++.|.+.. +....+ ..+.+. ....+++.||.|-
T Consensus 243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~~----~~~~~~--~g~t~iiiThlD~- 315 (359)
T 2og2_A 243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQA----REFNEV--VGITGLILTKLDG- 315 (359)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHHH----HHHHHH--TCCCEEEEESCTT-
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHHH----HHHHHh--cCCeEEEEecCcc-
Confidence 457899997654211 11123467777888886543 233222 222221 2345889999882
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 217 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .+ --.+...+...+.++.++.. |+.++++
T Consensus 316 -----~-~~--gG~~lsi~~~~~~pI~~ig~--Ge~~~Dl 345 (359)
T 2og2_A 316 -----S-AR--GGCVVSVVEELGIPVKFIGV--GEAVEDL 345 (359)
T ss_dssp -----C-SC--THHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred -----c-cc--ccHHHHHHHHhCCCEEEEeC--CCChHhc
Confidence 1 11 23345566677888777644 4445443
No 397
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.20 E-value=0.059 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|.|.|.+|+|||||++.+.+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988743
No 398
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.18 E-value=0.023 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998754
No 399
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.16 E-value=0.048 Score=44.43 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++|.|++|+|||+|+..+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999864
No 400
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.15 E-value=0.049 Score=43.81 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
+++.|++|+|||+|+..+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998865
No 401
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.14 E-value=0.046 Score=50.92 Aligned_cols=92 Identities=10% Similarity=0.077 Sum_probs=50.5
Q ss_pred EEEEEEeCCCCcCCcc-cc----------ccc-ccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhHCCCCceEEEEeCCC
Q 023316 148 IAFSIWDVGGDSRSFD-HV----------PIA-CKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFD 214 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~~----------~~~-~~~ad~iilv~d~~~~~-s~~~~~~~~~~l~~~~~~~~~Ilv~nK~D 214 (284)
+.+.+.||+|...... +. +.+ ....+-++||.|.+... .++. ...+.+. -.+..+|.||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~--~~itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEA--VGLTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHH--TCCSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhh--cCCCEEEEEcCC
Confidence 3466899999854321 10 001 12356788899976542 2222 2223221 134479999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 215 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 215 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
- . .+ ...+..++...+.++.++. +|++++++
T Consensus 450 ~------t-ak--gG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 G------T-AK--GGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp G------C-SC--CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred C------c-cc--ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 2 1 11 2235566667788887753 46666554
No 402
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.14 E-value=0.055 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998854
No 403
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.12 E-value=0.049 Score=44.13 Aligned_cols=23 Identities=30% Similarity=0.226 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+|.|.+|+||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 404
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.11 E-value=0.056 Score=45.57 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 023316 101 LKISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~ 121 (284)
..|+|+|..|+|||||++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 405
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.10 E-value=0.054 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+++|.+|+||||+...+..
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998854
No 406
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.09 E-value=0.057 Score=45.41 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+.|.|.|.+|+||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988854
No 407
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.07 E-value=0.036 Score=43.74 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999853
No 408
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.07 E-value=0.05 Score=43.02 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.+|+|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999854
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.06 E-value=0.052 Score=43.01 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+...|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988854
No 410
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.97 E-value=0.049 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|+|+.|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 4889999999999999999764
No 411
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.89 E-value=0.045 Score=50.63 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999998753
No 412
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.88 E-value=0.045 Score=47.97 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-++|+|..|+|||||++.+.+..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 36799999999999999999763
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.83 E-value=0.058 Score=43.97 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-|+++|.+|+||||+.+.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999998854
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.76 E-value=0.11 Score=39.59 Aligned_cols=22 Identities=14% Similarity=0.001 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|++.|++|+|||+++..+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999988654
No 415
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.75 E-value=0.06 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..-|++.|.+|+||||+++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999865
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.68 E-value=0.056 Score=50.64 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|..|+|||||++.+.+--
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 49999999999999999997643
No 417
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.62 E-value=0.061 Score=49.40 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
++.++|+.|+|||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998754
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.59 E-value=0.059 Score=46.02 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++|+|++|+|||||+..+.+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 419
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.53 E-value=0.063 Score=45.67 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.+++.|++|+|||+|++.+...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999998653
No 420
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.52 E-value=0.061 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|+|.+|+||||+.+.+.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998854
No 421
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.48 E-value=0.068 Score=44.70 Aligned_cols=21 Identities=29% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|++.|++|+|||+|++.+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999865
No 422
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.44 E-value=0.065 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
--+++.|++|+|||+|++.+.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999999999998753
No 423
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.42 E-value=0.083 Score=43.14 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+.|+|.|.+|+||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999865
No 424
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.40 E-value=0.073 Score=50.22 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.++|+|+.|+|||||++.+.+-.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998854
No 425
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.23 E-value=0.074 Score=43.94 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++++|++|+|||+|+.++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999888754
No 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.22 E-value=0.089 Score=40.97 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|+|.|.+|+||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998853
No 427
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.17 E-value=0.07 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|.|++|+|||+|++.+.+.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.10 E-value=0.081 Score=45.46 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-|++.|.+|+||||+.+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.10 E-value=0.076 Score=49.34 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999865
No 430
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.02 E-value=0.078 Score=46.18 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-+++.|++|+|||+|++.+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999865
No 431
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.01 E-value=0.077 Score=50.47 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhc
Confidence 5889999999999999999774
No 432
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.94 E-value=0.24 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-|+++|.+|+||||+.+++..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999865
No 433
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.92 E-value=0.082 Score=47.55 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++++|++|+|||||++.+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 688999999999999999875
No 434
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.91 E-value=0.08 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-+.|+|+.|+|||||++.+.+-.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 435
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.89 E-value=0.081 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.-+++.|++|+|||+|+..+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577789999999999999864
No 436
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.87 E-value=0.084 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|++.|++|+|||+|++.+.+.
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999998753
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.81 E-value=0.088 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
+++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.79 E-value=0.1 Score=40.23 Aligned_cols=19 Identities=21% Similarity=0.329 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 023316 103 ISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~ 121 (284)
.+++|+.|+|||||+..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5799999999999999874
No 439
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.77 E-value=0.084 Score=45.79 Aligned_cols=90 Identities=12% Similarity=0.053 Sum_probs=50.3
Q ss_pred EEEEEEeCCCCcCCcc--ccc--cccc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCCCCCCCC
Q 023316 148 IAFSIWDVGGDSRSFD--HVP--IACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 221 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~--~~~--~~~~--~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl~~~~~~ 221 (284)
..+.|.||+|...... +.. ..+. ..+.+++|.|.+.. .+++..+.+.+. .-...-+|.||.|..
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~~giVltk~D~~----- 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPVNQYIFTKIDET----- 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCCCEEEEECTTTC-----
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCCCEEEEeCCCcc-----
Confidence 4577999999875432 111 1222 36788889987643 344444443332 112224777999931
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023316 222 DLQWTIATQARAYAKAMKATLFFSSATHNINV 253 (284)
Q Consensus 222 ~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v 253 (284)
.. ...+...+...++++..++ +|+++
T Consensus 253 --~~--~g~~~~~~~~~~~pi~~i~--~ge~v 278 (296)
T 2px0_A 253 --TS--LGSVFNILAESKIGVGFMT--NGQNV 278 (296)
T ss_dssp --SC--CHHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred --cc--hhHHHHHHHHHCcCEEEEE--CCCCC
Confidence 11 2345667777888876654 34554
No 440
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.74 E-value=0.1 Score=43.68 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 023316 100 SLKISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~ 121 (284)
.+.|++.|.+|+||||+.+.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999886
No 441
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.70 E-value=0.088 Score=45.30 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..+++.|++|+|||+|+..+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999986643
No 442
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.69 E-value=0.11 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..|+++|++|+|||+|...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999764
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.65 E-value=0.094 Score=45.61 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|.|.+|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 4889999999999999998754
No 444
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.61 E-value=0.08 Score=50.50 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 445
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.61 E-value=0.073 Score=43.73 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 446
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.60 E-value=0.097 Score=44.83 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+++.|++|+|||+|++.+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998864
No 447
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.59 E-value=0.095 Score=46.43 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|.|++|+|||+|++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998754
No 448
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=91.51 E-value=0.12 Score=46.94 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred CceeeEEEEEcCCCCChHHHHHHH
Q 023316 97 DLVSLKISLLGDCQIGKTSFVVKY 120 (284)
Q Consensus 97 ~~~~~KI~llG~~~vGKSsLl~~l 120 (284)
....+|++|+|.+.+||||++.++
T Consensus 37 ~~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 37 YRATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp CTTEEEEEEEESTTSSHHHHHHHH
T ss_pred hhccceEEEecCCCCchhhHHHHH
Confidence 355799999999999999999987
No 449
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.49 E-value=0.097 Score=50.10 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|+.|+|||||++.+.+-.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999998754
No 450
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.37 E-value=0.096 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|.|.+|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999998753
No 451
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.35 E-value=0.092 Score=50.13 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+++++|+.|+|||||++.+.+-
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6889999999999999998764
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.34 E-value=0.11 Score=44.07 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhcC
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
...+++.|++|+|||+|+..+...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457899999999999999998653
No 453
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.26 E-value=0.13 Score=42.75 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=18.9
Q ss_pred eeEEEEEcCCCCChHHHHHHH
Q 023316 100 SLKISLLGDCQIGKTSFVVKY 120 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l 120 (284)
.+||++.|.+||||||++..+
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~l 26 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQA 26 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHH
Confidence 589999999999999997665
No 454
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.22 E-value=0.11 Score=45.24 Aligned_cols=93 Identities=16% Similarity=0.136 Sum_probs=51.8
Q ss_pred EEEEEEeCCCCcCCcc-c-------ccc----cccCCcEEEEEEeCCChhhHHHHHHHHHHHHhHCCCCceEEEEeCCCC
Q 023316 148 IAFSIWDVGGDSRSFD-H-------VPI----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 215 (284)
Q Consensus 148 ~~l~l~Dt~G~e~~~~-~-------~~~----~~~~ad~iilv~d~~~~~s~~~~~~~~~~l~~~~~~~~~Ilv~nK~Dl 215 (284)
..+.+.||+|...... + ... .-..++.+++|.|.+.. .+.+.. ...+.+. ..+.-+|.||.|-
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVTGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence 3467999999643221 1 000 11347888999998633 222221 2233222 2233588899993
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023316 216 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 256 (284)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~Sa~~~~~v~~l 256 (284)
. .. -..+...+...+.|+.+++. |++++++
T Consensus 262 ------~-~~--gG~~l~~~~~~~~Pi~~i~~--Ge~~~dl 291 (306)
T 1vma_A 262 ------T-AK--GGITLAIARELGIPIKFIGV--GEKAEDL 291 (306)
T ss_dssp ------C-SC--TTHHHHHHHHHCCCEEEEEC--SSSGGGE
T ss_pred ------c-cc--hHHHHHHHHHHCCCEEEEeC--CCChhhc
Confidence 1 11 23366777888999888755 5555554
No 455
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.22 E-value=0.09 Score=46.18 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
+++.|++|+|||||++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998876
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.20 E-value=0.13 Score=42.74 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=20.8
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
....|.|+|.+|+||||+.+.+.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998864
No 457
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.13 E-value=0.13 Score=44.20 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 023316 100 SLKISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~ 121 (284)
.+.|+|.|.+|+||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999886
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.10 E-value=0.12 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|+.|+|||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58899999999999999998754
No 459
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.09 E-value=0.068 Score=40.78 Aligned_cols=21 Identities=10% Similarity=0.066 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|++.|++|+|||+++..+..
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCC
T ss_pred cEEEECCCCccHHHHHHHHHH
Confidence 499999999999999887754
No 460
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.05 E-value=0.12 Score=48.60 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|..|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998854
No 461
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.04 E-value=0.12 Score=44.48 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-+++.|++|+|||+|+..+...
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999988653
No 462
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.00 E-value=0.11 Score=45.50 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998764
No 463
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.93 E-value=0.12 Score=48.81 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
No 464
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.86 E-value=0.17 Score=40.93 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=21.7
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhcC
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
..+.|.|.|..|+||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4688999999999999999988653
No 465
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.85 E-value=0.12 Score=45.21 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
--|++.|++|+|||+|+..+...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35899999999999999998753
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.81 E-value=0.12 Score=45.95 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-+.|+|++|+|||||++.+.+.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999999875
No 467
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.79 E-value=0.11 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-++|.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 468
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.78 E-value=0.13 Score=45.05 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhcC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~ 123 (284)
+++.|++|+|||+|++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998654
No 469
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.70 E-value=0.084 Score=50.18 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|+.|+|||||++.+.+-
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 5789999999999999887764
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.55 E-value=0.15 Score=48.87 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
.+.|+|+.|+|||||++.+.+-.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998854
No 471
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.55 E-value=0.13 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.|++.|++|+|||+|+..+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999999999865
No 472
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.52 E-value=0.1 Score=49.67 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+++++|+.|+|||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999988764
No 473
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=90.48 E-value=0.14 Score=45.63 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=17.2
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 023316 103 ISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~ 121 (284)
.+|+|+.|+|||||++.++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5589999999999999976
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.42 E-value=0.14 Score=46.75 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-|++.|+||+|||+|+..+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999865
No 475
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.40 E-value=0.07 Score=45.01 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHhc
Q 023316 103 ISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~ 122 (284)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999865
No 476
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.38 E-value=0.15 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.+++.|++|+|||+|+..+..
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 477
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=90.32 E-value=0.14 Score=45.25 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
--+++.|++|+|||+|+..+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 478
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.30 E-value=0.12 Score=43.70 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhc
Q 023316 100 SLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 100 ~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
...|+|.|..|+||||+++.+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988764
No 479
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.30 E-value=0.16 Score=40.76 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.|.|.|.+|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998854
No 480
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.25 E-value=0.15 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
-.|++.|+||+|||+|+..+.+
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 3699999999999999999865
No 481
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=90.18 E-value=0.16 Score=46.96 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.++++|++|+|||+|+..+...
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988653
No 482
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=90.18 E-value=0.16 Score=44.65 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..|+|+|.+|+|||||...+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998864
No 483
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.11 E-value=0.15 Score=45.17 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++|.|++|+|||+|++.+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 484
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.04 E-value=0.16 Score=44.31 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.|++.|++|+|||+|++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999998543
No 485
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.97 E-value=0.25 Score=41.45 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcCC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGNE 124 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~~ 124 (284)
-|++.|++|+|||+|++.+...-
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTS
T ss_pred CEEEECCCCCcHHHHHHHHHHhc
Confidence 58999999999999999987643
No 486
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.92 E-value=0.17 Score=46.44 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
--|++.|+||+|||+|+..+.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3699999999999999999865
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.17 Score=48.49 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEcCCCCChHHHHHHHhcCCC
Q 023316 103 ISLLGDCQIGKTSFVVKYVGNEQ 125 (284)
Q Consensus 103 I~llG~~~vGKSsLl~~l~~~~~ 125 (284)
+.|+|..|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999988543
No 488
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.86 E-value=0.19 Score=41.85 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.0
Q ss_pred eeeEEEEEcCCCCChHHHHHHHhc
Q 023316 99 VSLKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 99 ~~~KI~llG~~~vGKSsLl~~l~~ 122 (284)
..+++.|+|.+|+||||+...+..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 367999999999999999988854
No 489
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.79 E-value=0.21 Score=44.51 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+|+++|.+|+||||+...+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999987643
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.71 E-value=0.21 Score=39.84 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhcC
Q 023316 101 LKISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~~ 123 (284)
.=|++.|++|+|||||...|...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 35899999999999999999764
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.71 E-value=0.17 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|.|++|+|||+|++.+...
T Consensus 86 ~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999998653
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=89.70 E-value=0.17 Score=46.39 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-+++.|++|+|||+|++.+.+
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~ 152 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGN 152 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998865
No 493
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.65 E-value=0.2 Score=44.30 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|+|+.|+|||+|...|...
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.56 E-value=0.18 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
.+++.|++|+|||+|+..+..
T Consensus 74 ~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 495
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=89.53 E-value=0.17 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 023316 102 KISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~ 122 (284)
-++++|++|+|||||++.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.52 E-value=0.18 Score=45.73 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
-+.|+|++|+|||||+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999875
No 497
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.46 E-value=0.19 Score=44.60 Aligned_cols=22 Identities=27% Similarity=0.140 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhc
Q 023316 101 LKISLLGDCQIGKTSFVVKYVG 122 (284)
Q Consensus 101 ~KI~llG~~~vGKSsLl~~l~~ 122 (284)
--|+|.|++|+|||+|++.+..
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999865
No 498
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=89.46 E-value=0.16 Score=46.88 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
+++++|++|+|||||++.+..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 7999999999999999988654
No 499
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.43 E-value=0.21 Score=41.19 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 023316 102 KISLLGDCQIGKTSFVVKYV 121 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~ 121 (284)
=+++.|+||+|||+|+..++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999998875
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.42 E-value=0.21 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcC
Q 023316 102 KISLLGDCQIGKTSFVVKYVGN 123 (284)
Q Consensus 102 KI~llG~~~vGKSsLl~~l~~~ 123 (284)
-|+|+|++|||||+|...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999654
Done!