Query 023317
Match_columns 284
No_of_seqs 110 out of 698
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 03:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023317.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023317hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 1.1E-88 2.5E-93 663.1 27.1 283 1-283 215-497 (497)
2 PLN02596 hexokinase-like 100.0 4.4E-87 9.5E-92 650.4 26.5 273 1-278 215-487 (490)
3 PLN02914 hexokinase 100.0 1.8E-86 3.9E-91 646.1 26.3 276 1-278 215-490 (490)
4 PLN02362 hexokinase 100.0 5.9E-86 1.3E-90 645.6 26.3 279 1-280 215-503 (509)
5 KOG1369 Hexokinase [Carbohydra 100.0 8.3E-81 1.8E-85 598.9 22.0 270 1-281 201-473 (474)
6 PTZ00107 hexokinase; Provision 100.0 3.7E-79 8.1E-84 593.5 24.8 257 1-279 204-464 (464)
7 PF03727 Hexokinase_2: Hexokin 100.0 1.8E-77 3.8E-82 540.8 21.2 241 30-277 1-243 (243)
8 COG5026 Hexokinase [Carbohydra 100.0 1.6E-68 3.5E-73 502.8 20.6 272 1-281 191-465 (466)
9 KOG1794 N-Acetylglucosamine ki 97.8 0.0019 4.2E-08 59.7 16.7 88 183-276 231-318 (336)
10 TIGR00744 ROK_glcA_fam ROK fam 97.5 0.0071 1.5E-07 56.1 16.9 79 184-272 227-308 (318)
11 PF01869 BcrAD_BadFG: BadF/Bad 97.4 0.0011 2.4E-08 60.4 9.6 79 183-272 193-271 (271)
12 PRK13310 N-acetyl-D-glucosamin 96.9 0.055 1.2E-06 50.0 16.0 77 184-272 221-300 (303)
13 PRK09557 fructokinase; Reviewe 96.5 0.27 5.8E-06 45.4 17.3 76 184-271 220-298 (301)
14 PRK05082 N-acetylmannosamine k 96.1 0.28 6E-06 45.0 15.2 181 11-272 100-286 (291)
15 PRK09698 D-allose kinase; Prov 96.1 0.18 3.8E-06 46.5 13.7 74 189-272 217-294 (302)
16 PRK12408 glucokinase; Provisio 95.6 0.75 1.6E-05 43.5 15.9 204 6-272 108-331 (336)
17 PRK00292 glk glucokinase; Prov 95.5 0.92 2E-05 42.2 16.1 204 6-272 90-313 (316)
18 PRK14101 bifunctional glucokin 94.7 1 2.2E-05 46.3 15.1 201 6-272 105-328 (638)
19 PTZ00288 glucokinase 1; Provis 93.0 7.6 0.00016 38.0 16.8 80 184-276 299-392 (405)
20 COG1940 NagC Transcriptional r 92.1 6.4 0.00014 36.3 14.5 191 10-274 109-307 (314)
21 PF02782 FGGY_C: FGGY family o 91.0 2.3 5.1E-05 36.2 9.7 49 219-276 150-198 (198)
22 TIGR00749 glk glucokinase, pro 90.9 9 0.00019 35.7 14.3 201 6-269 89-316 (316)
23 PF02685 Glucokinase: Glucokin 87.2 16 0.00034 34.5 13.0 97 6-115 90-201 (316)
24 COG2971 Predicted N-acetylgluc 85.7 32 0.00069 32.3 15.8 162 10-242 99-272 (301)
25 PRK00976 hypothetical protein; 77.4 27 0.00058 33.2 10.3 72 184-273 239-310 (326)
26 PRK04123 ribulokinase; Provisi 62.0 37 0.00079 34.1 8.3 49 220-276 440-488 (548)
27 KOG2517 Ribulose kinase and re 60.7 33 0.00072 34.6 7.5 84 173-279 383-466 (516)
28 TIGR01314 gntK_FGGY gluconate 57.2 60 0.0013 32.3 8.7 47 221-276 404-450 (505)
29 PRK00753 psbL photosystem II r 55.7 15 0.00033 23.6 2.7 30 91-120 3-32 (39)
30 TIGR01312 XylB D-xylulose kina 55.5 73 0.0016 31.1 9.0 48 221-277 393-440 (481)
31 PF02419 PsbL: PsbL protein; 55.2 13 0.00028 23.8 2.3 30 92-121 2-31 (37)
32 PRK10939 autoinducer-2 (AI-2) 54.8 72 0.0016 31.8 8.9 47 221-276 412-458 (520)
33 TIGR03192 benz_CoA_bzdQ benzoy 53.5 36 0.00078 31.9 6.0 111 95-243 149-263 (293)
34 TIGR02628 fuculo_kin_coli L-fu 53.3 73 0.0016 31.3 8.6 47 221-276 396-442 (465)
35 COG1069 AraB Ribulose kinase [ 49.2 75 0.0016 32.3 7.8 66 197-276 415-480 (544)
36 CHL00038 psbL photosystem II p 48.3 21 0.00045 22.9 2.4 30 92-121 3-32 (38)
37 TIGR01234 L-ribulokinase L-rib 48.2 65 0.0014 32.3 7.4 50 220-277 437-486 (536)
38 PRK00047 glpK glycerol kinase; 47.7 95 0.0021 30.7 8.5 47 221-276 406-452 (498)
39 PRK10331 L-fuculokinase; Provi 46.9 47 0.001 32.7 6.1 47 221-276 392-438 (470)
40 PTZ00294 glycerol kinase-like 46.1 1.1E+02 0.0024 30.3 8.7 48 221-277 409-456 (504)
41 TIGR01311 glycerol_kin glycero 44.1 1.2E+02 0.0027 29.9 8.6 47 221-276 402-448 (493)
42 PRK03011 butyrate kinase; Prov 44.1 2.5E+02 0.0054 26.9 10.4 70 184-268 269-338 (358)
43 TIGR01315 5C_CHO_kinase FGGY-f 42.9 1.3E+02 0.0028 30.3 8.6 47 221-276 446-492 (541)
44 PRK13317 pantothenate kinase; 42.9 2.3E+02 0.005 26.1 9.6 52 179-244 197-248 (277)
45 KOG3127 Deoxycytidylate deamin 41.7 17 0.00037 32.6 1.8 26 18-43 73-106 (230)
46 PRK13311 N-acetyl-D-glucosamin 41.4 45 0.00099 29.8 4.7 38 11-48 100-141 (256)
47 PRK15027 xylulokinase; Provisi 39.7 91 0.002 30.8 6.9 47 221-276 389-436 (484)
48 TIGR01145 ATP_synt_delta ATP s 37.5 2.5E+02 0.0053 23.6 9.1 111 145-269 38-148 (172)
49 TIGR02259 benz_CoA_red_A benzo 37.1 1.6E+02 0.0034 29.1 7.7 111 97-244 293-406 (432)
50 TIGR02261 benz_CoA_red_D benzo 36.8 1.7E+02 0.0038 26.9 7.7 112 96-244 122-236 (262)
51 PF00022 Actin: Actin; InterP 36.4 60 0.0013 30.7 4.9 52 221-275 313-368 (393)
52 PLN02295 glycerol kinase 33.4 2E+02 0.0043 28.7 8.2 48 221-277 415-462 (512)
53 PRK13430 F0F1 ATP synthase sub 31.9 3.2E+02 0.007 25.0 8.7 48 218-269 198-245 (271)
54 TIGR03286 methan_mark_15 putat 30.9 1.8E+02 0.0038 28.6 7.0 109 97-242 266-378 (404)
55 PF00480 ROK: ROK family; Int 29.8 70 0.0015 26.5 3.7 39 10-48 94-136 (179)
56 CHL00119 atpD ATP synthase CF1 28.8 3.6E+02 0.0079 22.9 9.2 110 145-268 45-154 (184)
57 TIGR02627 rhamnulo_kin rhamnul 26.8 3.1E+02 0.0068 26.7 8.2 47 221-277 390-436 (454)
58 PRK10640 rhaB rhamnulokinase; 26.6 3.2E+02 0.0068 27.0 8.2 46 221-276 378-423 (471)
59 cd01319 AMPD AMP deaminase (AM 24.5 70 0.0015 32.2 3.1 23 103-125 158-180 (496)
60 COG0554 GlpK Glycerol kinase [ 24.4 4.8E+02 0.01 26.4 8.8 50 219-277 403-452 (499)
61 COG1070 XylB Sugar (pentulose 24.3 4E+02 0.0086 26.5 8.5 75 185-276 376-450 (502)
62 PTZ00466 actin-like protein; P 23.1 61 0.0013 31.2 2.4 50 222-274 302-354 (380)
63 PRK07432 5'-methylthioadenosin 22.5 71 0.0015 29.9 2.6 15 29-43 2-16 (290)
64 COG0497 RecN ATPase involved i 22.4 31 0.00067 35.2 0.2 31 85-118 411-443 (557)
65 PTZ00452 actin; Provisional 20.1 92 0.002 29.8 2.9 51 221-274 296-349 (375)
66 PLN02544 phosphoribosylaminoim 20.0 3.1E+02 0.0068 26.6 6.4 93 98-197 154-251 (370)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.1e-88 Score=663.07 Aligned_cols=283 Identities=89% Similarity=1.330 Sum_probs=266.2
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCC
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 80 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~ 80 (284)
|+|+|++|+|+||||||||||++++|.+|+|.||+|+|||||+||+|++++|+||++..+..++||||||||+|+.+.+|
T Consensus 215 l~r~~l~v~v~AlvNDTVGTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp 294 (497)
T PLN02405 215 MERVGLDMRVSALVNDTIGTLAGGRYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 294 (497)
T ss_pred HHHcCCCceEEEEEecCHHHHHHhhcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999997755567899999999999988899
Q ss_pred CChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHH
Q 023317 81 LTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 160 (284)
Q Consensus 81 ~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~ 160 (284)
+|+||+.+|+.|.|||+|+||||+||||||||+|++|+++++++.||++..|+.|.+||+|+|++||.|+.|++++++.+
T Consensus 295 ~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~ 374 (497)
T PLN02405 295 LTEYDHALDVESLNPGEQIFEKIISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVV 374 (497)
T ss_pred CchHHHHHhhcCCCCCcchhhHHHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHH
Q 023317 161 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQ 240 (284)
Q Consensus 161 ~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~ 240 (284)
+++|++.|+++.++.+|++++|+||++|.+|||||+||+|+||++|+++........++++||||||+|+|||.|+++++
T Consensus 375 ~~~l~~~l~~~~~~~~~~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~ 454 (497)
T PLN02405 375 GSKLKDILEIPNTSLKMRKVVVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCME 454 (497)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHH
Confidence 99999999998778899999999999999999999999999999999885321112257999999999999999999999
Q ss_pred HHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhhhcc
Q 023317 241 STVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEVEE 283 (284)
Q Consensus 241 ~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~~~~~~ 283 (284)
++++++++++.+++|++.+++||||+|||++||+++++..|||
T Consensus 455 ~~l~ell~~~~~~~v~l~~a~DGSGvGAAl~AA~~~~~~~~~~ 497 (497)
T PLN02405 455 STLKELLGEEVSESIEVEHSNDGSGIGAALLAASHSLYLEVEE 497 (497)
T ss_pred HHHHHHhCcccCceEEEEEecCchHHHHHHHHHHHhhhhcccC
Confidence 9999999887678999999999999999999999999999986
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=4.4e-87 Score=650.36 Aligned_cols=273 Identities=62% Similarity=1.009 Sum_probs=259.5
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCC
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 80 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~ 80 (284)
|+|+|++|+|+||+|||||||+|++|.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+...+|
T Consensus 215 l~r~~l~v~v~AivNDTVgTL~a~aY~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp 294 (490)
T PLN02596 215 LEKHGLKIRVFALVDDTIGNLAGGRYYNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLP 294 (490)
T ss_pred HHhcCCCceEEEEEEcCHHHHHhhhcCCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999998765667899999999999877799
Q ss_pred CChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHH
Q 023317 81 LTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 160 (284)
Q Consensus 81 ~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~ 160 (284)
+|+||++||+.|+|||+|+||||+||||||||+|++|+++++++.||++..|+.|.++|+|+|++||.|+.|+++++..+
T Consensus 295 ~T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~ 374 (490)
T PLN02596 295 ITEFDASLDAESSNPGSRIFEKLTSGMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVV 374 (490)
T ss_pred CChHHHHHhccCCCCCcchHHHHHhhhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHH
Q 023317 161 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQ 240 (284)
Q Consensus 161 ~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~ 240 (284)
+++|.+.|+++.++++|+.++|+||++|.+|||||+||+|+||++|+++. ..++++||||||+|+|||.|+++++
T Consensus 375 ~~~l~~~l~~~~~~~~d~~~lr~i~~~V~~RAArL~Aa~iaail~k~g~~-----~~~~~~VavDGSvye~~p~f~~~l~ 449 (490)
T PLN02596 375 NEKLKEIFGITDSTPMAREVVAEVCDIVAERGARLAGAGIVGIIKKLGRI-----ENKKSVVTVEGGLYEHYRVFRNYLH 449 (490)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCceEEEEeCcceeeCcCHHHHHH
Confidence 99999999997788999999999999999999999999999999999863 2357999999999999999999999
Q ss_pred HHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcch
Q 023317 241 STVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 278 (284)
Q Consensus 241 ~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~ 278 (284)
+++++++|++...+|++.+++||||+|||++||+.+..
T Consensus 450 ~al~ellg~~~~~~i~~~~s~DGSG~GAAl~AA~~~~~ 487 (490)
T PLN02596 450 SSVWEMLGSELSDNVVIEHSHGGSGAGALFLAACQTGE 487 (490)
T ss_pred HHHHHHhCcccCCcEEEEEccCchhHHHHHHHHhhccC
Confidence 99999999877789999999999999999999998864
No 3
>PLN02914 hexokinase
Probab=100.00 E-value=1.8e-86 Score=646.07 Aligned_cols=276 Identities=59% Similarity=0.962 Sum_probs=258.4
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCC
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 80 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~ 80 (284)
|+|++++|+|+||||||||||++++|.+|+|.||+|+|||||+||+|++++|+||++..+..++|+||||||+|+ +.+|
T Consensus 215 l~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~-~~lp 293 (490)
T PLN02914 215 MERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAFS-DGLP 293 (490)
T ss_pred HHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCCCCCceEEEeccccccC-CCCC
Confidence 467899999999999999999999999999999999999999999999999999987555678999999999996 5799
Q ss_pred CChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHH
Q 023317 81 LTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 160 (284)
Q Consensus 81 ~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~ 160 (284)
+|+||+.+|+.|+|||+|+||||+||||||||+|++|+++++++.||++..|+.|.++|+|+|++||.|+.|+++++..+
T Consensus 294 ~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~ 373 (490)
T PLN02914 294 LTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNSDDLQAV 373 (490)
T ss_pred CChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHH
Q 023317 161 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQ 240 (284)
Q Consensus 161 ~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~ 240 (284)
+.+|++.|++. ++.+|++++|+||++|.+|||||+||+|+||++|++.........++++||||||+|+|||.|+++++
T Consensus 374 ~~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f~~~l~ 452 (490)
T PLN02914 374 GSILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQYRRYMQ 452 (490)
T ss_pred HHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccHHHHHH
Confidence 99999999995 89999999999999999999999999999999999874211112257999999999999999999999
Q ss_pred HHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcch
Q 023317 241 STVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQY 278 (284)
Q Consensus 241 ~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~ 278 (284)
++++++++++..++|++++++||||+|||++||+++++
T Consensus 453 ~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s~~ 490 (490)
T PLN02914 453 DAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNSKY 490 (490)
T ss_pred HHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhhcC
Confidence 99999998877789999999999999999999999875
No 4
>PLN02362 hexokinase
Probab=100.00 E-value=5.9e-86 Score=645.58 Aligned_cols=279 Identities=58% Similarity=0.955 Sum_probs=259.8
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCC
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLP 80 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~ 80 (284)
|+|+|++|+|+||||||||||++++|.+|+|.||+|+|||||+||+|++++|+|+++..+..++||||||||+|+++.+|
T Consensus 215 l~r~~l~v~v~AlvNDTVgTL~a~aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp 294 (509)
T PLN02362 215 LNRRGLDMRVAALVNDTVGTLALGHYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLP 294 (509)
T ss_pred HHHcCCCcEEEEEEEcCHHHHHhhhcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCC
Confidence 46889999999999999999999999999999999999999999999999999998755567899999999999988899
Q ss_pred CChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHH
Q 023317 81 LTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVV 160 (284)
Q Consensus 81 ~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~ 160 (284)
+|+||+.||+.|.|||+|+||||+||||||||+|++|+++++++.||++ .|+.|.+||+|+|++||.|+.|+++++..+
T Consensus 295 ~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~ 373 (509)
T PLN02362 295 RTSYDIDLDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEV 373 (509)
T ss_pred CchHHHHHhcCCCCcCcchHHHHHhhccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHH
Confidence 9999999999999999999999999999999999999999999999975 788999999999999999999999999999
Q ss_pred HHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcC--C--------CCCcceEEEEecccce
Q 023317 161 GKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVR--D--------GEKQKSVIALDGGLFE 230 (284)
Q Consensus 161 ~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~--~--------~~~~~v~VgvdGS~~~ 230 (284)
+.+|++.||++.++.+|+.++|+||++|.+|||||+||+|+||++|+++.... . .+.++++||||||+|+
T Consensus 374 ~~~l~~~~~~~~~~~~~~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye 453 (509)
T PLN02362 374 ARILKETLGISEVPLKVRKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYT 453 (509)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhh
Confidence 99999999998788999999999999999999999999999999999853210 0 0124699999999999
Q ss_pred echhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhh
Q 023317 231 HYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLE 280 (284)
Q Consensus 231 ~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~~~ 280 (284)
|||.|+++++++++++++++...+|++.+++||||+|||++||++++|..
T Consensus 454 ~yp~f~~~~~~~l~ell~~~~~~~v~i~~a~DGSgvGAAl~AA~~~~~~~ 503 (509)
T PLN02362 454 NYTMFREYLHEALNEILGEDVAQHVILKATEDGSGIGSALLAASYSSYSV 503 (509)
T ss_pred cCcCHHHHHHHHHHHHhCcccCceEEEEEccCchHHHHHHHHHHHHhhhh
Confidence 99999999999999999887778999999999999999999999998854
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.3e-81 Score=598.92 Aligned_cols=270 Identities=46% Similarity=0.709 Sum_probs=253.3
Q ss_pred CCcCCCc-ceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCC--
Q 023317 1 MERIGLD-MRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS-- 77 (284)
Q Consensus 1 l~r~~~~-v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~-- 77 (284)
|+|||++ ++|+|++|||||||++|+|++|+|.||+|+|||||+||+|+.++|+|+++..... +||||||||+||++
T Consensus 201 l~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k~~~~~~~~-~miIN~EWG~F~~~~~ 279 (474)
T KOG1369|consen 201 IKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEKVEGDAGRG-PMCINTEWGAFGDNSL 279 (474)
T ss_pred HHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhhcccccCCC-ceEEEccccCCCcccc
Confidence 4688987 9999999999999999999999999999999999999999999999999854333 89999999999954
Q ss_pred CCCCChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcCh
Q 023317 78 HLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDL 157 (284)
Q Consensus 78 ~l~~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~ 157 (284)
.+|+|+||..+|++|+|||+|.||||+||||||||+|++|+++.+++.||+++. +.+ +|+.|+|+++|+|++|+++++
T Consensus 280 ~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~-~~l-~p~~~~T~~~S~i~~D~~~~l 357 (474)
T KOG1369|consen 280 DLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS-TKL-TPFIFETKYVSAIEEDDTGAL 357 (474)
T ss_pred ccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-ccc-CcceeccchHHhHhcCCchHH
Confidence 589999999999999999999999999999999999999999999999999998 667 999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHH
Q 023317 158 RVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA 237 (284)
Q Consensus 158 ~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~ 237 (284)
..+.. +.+.+|++..+.+|+..|+++|+.|++|||+|+||+|+||+++++.. ...+++||+|||+|++||.|++
T Consensus 358 ~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~~-----~~~~~~VgvdGsly~~yP~f~~ 431 (474)
T KOG1369|consen 358 QETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGEL-----SRKRVTVGVDGSLYKNHPFFRE 431 (474)
T ss_pred HHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc-----ccCceEEEeccchhHcCchHHH
Confidence 99999 66669998889999999999999999999999999999999999962 3468999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhhh
Q 023317 238 CMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEV 281 (284)
Q Consensus 238 ~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~~~~ 281 (284)
+|++++++|+|+ .++|.+.+++||||+|||++||++++++..
T Consensus 432 ~m~~~l~eLlg~--~~~v~i~~s~dgSg~GAAL~Aav~~~~~~~ 473 (474)
T KOG1369|consen 432 YLKEALRELLGP--SIHVKLVLSEDGSGRGAALIAAVASRLKQE 473 (474)
T ss_pred HHHHHHHHHhCC--CceEEEEECCCCccccHHHHHHHHhhhhcc
Confidence 999999999984 579999999999999999999999998864
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=3.7e-79 Score=593.45 Aligned_cols=257 Identities=34% Similarity=0.514 Sum_probs=237.7
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCC----CCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCC
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHN----KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRS 76 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~----~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~ 76 (284)
|+|++++|+|+||||||||||+|++|.+ |+|.||+|+|||||+||+|+.... +..+.|+||||||+||+
T Consensus 204 l~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~~ 276 (464)
T PTZ00107 204 FKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFDS 276 (464)
T ss_pred HHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeeehhhcc-------CCCCcEEEEeeccccCC
Confidence 4688999999999999999999999999 999999999999999999964321 13457999999999974
Q ss_pred CCCCCChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcC
Q 023317 77 SHLPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPD 156 (284)
Q Consensus 77 ~~l~~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~ 156 (284)
.+|+|+||+.+|+.|+|||+|+||||+||||||||+|++|+++++++ .|+.|.++|+|+|+++|.|+.|++++
T Consensus 277 -~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~ 349 (464)
T PTZ00107 277 -KLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRRLIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPD 349 (464)
T ss_pred -CCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHHHHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCch
Confidence 59999999999999999999999999999999999999999998764 47789999999999999999999999
Q ss_pred hHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHH
Q 023317 157 LRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFS 236 (284)
Q Consensus 157 ~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~ 236 (284)
+..++++|.+.+++. ++.+|+.++|+||++|++|||+|+||+|+||++|++.. ..+++||||||+|+|||.|+
T Consensus 350 l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L~Aa~iaail~k~~~~------~~~~~VgvDGSv~~~~p~f~ 422 (464)
T PTZ00107 350 LQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQLAAAFIAAPAKKTRTV------QGKATVAIDGSVYVKNPWFR 422 (464)
T ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCceEEEEeCcceecCccHH
Confidence 999999999988986 78899999999999999999999999999999999873 25799999999999999999
Q ss_pred HHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchh
Q 023317 237 ACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYL 279 (284)
Q Consensus 237 ~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~~ 279 (284)
++++++++++++++ +++|+|.+++||||+||||+||++++++
T Consensus 423 ~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~~~~~ 464 (464)
T PTZ00107 423 RLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMVANDK 464 (464)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHhccCC
Confidence 99999999999876 5799999999999999999999998764
No 7
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=1.8e-77 Score=540.78 Aligned_cols=241 Identities=43% Similarity=0.718 Sum_probs=216.8
Q ss_pred CceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCC--CCCCChhhHhHhccCCCCCceeeeeecccc
Q 023317 30 DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSS--HLPLTEYDEALDTESLNPGEQIFEKIISGM 107 (284)
Q Consensus 30 ~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~--~l~~T~~D~~lD~~S~~pg~q~~EKmvsG~ 107 (284)
+|.||+|+|||||+||+|+.++|+|+++ ..++||||||||+|++. .+|+|+||+.||+.|+|||+|+||||+|||
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 5899999999999999999999999987 67899999999999653 279999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHH
Q 023317 108 YLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDI 187 (284)
Q Consensus 108 YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~ 187 (284)
|||||+|++|+++++++.||.+..|+.|.++|+|+|++||.|++|+++++..++.+|++.|+++ ++.+|+.++|+||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999989996 899999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHH
Q 023317 188 VATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIG 267 (284)
Q Consensus 188 V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~G 267 (284)
|++|||+|+|++|+||+.|+++... .+.++++||||||+|+|||.|++++++++++++++. .++|+|++++||||+|
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~--~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~G 233 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKG--RPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVG 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--CSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhcccc--ccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHH
Confidence 9999999999999999999764322 334689999999999999999999999999999876 5789999999999999
Q ss_pred HHHHHHHhcc
Q 023317 268 AALLAASHSQ 277 (284)
Q Consensus 268 AAl~aA~~~~ 277 (284)
||++||+++|
T Consensus 234 AAi~AA~a~r 243 (243)
T PF03727_consen 234 AAIAAAVACR 243 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999876
No 8
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-68 Score=502.76 Aligned_cols=272 Identities=39% Similarity=0.621 Sum_probs=255.9
Q ss_pred CCcCCCcceEEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCC-CCCCCcEEEEecccCcCCCC-
Q 023317 1 MERIGLDMRVAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGL-LPKSGEMVINMEWGNFRSSH- 78 (284)
Q Consensus 1 l~r~~~~v~v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~-~~~~~~miiNtEwG~fg~~~- 78 (284)
|++|++||+|+||+|||||||||+.|+++++.||+|+|||||+||+|+.+.|||++.. .+..++|+||+|||+|++..
T Consensus 191 l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfdn~~~ 270 (466)
T COG5026 191 LSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFDNELS 270 (466)
T ss_pred HHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCccccccccCCeEEEecccccCccee
Confidence 5688999999999999999999999999999999999999999999999999999742 35677899999999998654
Q ss_pred -CCCChhhHhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcCh
Q 023317 79 -LPLTEYDEALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDL 157 (284)
Q Consensus 79 -l~~T~~D~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~ 157 (284)
+|+|+||..+|+.|++||.|.||||+||+|||||+|++|+++..++.+|.++.|++++.|+.++|+.+|.++.|++..+
T Consensus 271 ~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~~~~p~~l~t~~~s~i~~D~~~nl 350 (466)
T COG5026 271 VLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDPFENL 350 (466)
T ss_pred eccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhhcccceeeecchhhhhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHH
Q 023317 158 RVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA 237 (284)
Q Consensus 158 ~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~ 237 (284)
+.+...+++.|+++ .+.++++.++.+|++|.+|||||+|+.++|++.+++.. ++..|+.|||+|++||+|++
T Consensus 351 ~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~-------k~~~v~~dGsv~e~yp~f~~ 422 (466)
T COG5026 351 RNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY-------KAYHVGADGSVIERYPGFRS 422 (466)
T ss_pred chhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC-------ccceeeeecchhhhchhHHH
Confidence 99999999999996 88999999999999999999999999999999999962 35669999999999999999
Q ss_pred HHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcchhhh
Q 023317 238 CMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQYLEV 281 (284)
Q Consensus 238 ~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~~~~~ 281 (284)
++.++++++++.+.. +|.+++++||||+|||++|+.+.+.+.+
T Consensus 423 ~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~~~~ 465 (466)
T COG5026 423 MLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKPKAV 465 (466)
T ss_pred HHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhcccccc
Confidence 999999999996554 9999999999999999999999887654
No 9
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.0019 Score=59.66 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCC
Q 023317 183 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 262 (284)
Q Consensus 183 ~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~d 262 (284)
.+++-|.++|+-..|-.+.||+.......++ .....|-+.|++|+-+....+-+...+... ..-..+++..-++
T Consensus 231 ~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~---g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~ 304 (336)
T KOG1794|consen 231 PLSAEIFRNAGETLGRHVVAVLPQLPPTLKK---GKTLPIVCVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKE 304 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCchhcc---cCcceEEEEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeecc
Confidence 4666788999999999999999998764321 146789999999998776666665555542 2234789999999
Q ss_pred chHHHHHHHHHHhc
Q 023317 263 GSGIGAALLAASHS 276 (284)
Q Consensus 263 gSg~GAAl~aA~~~ 276 (284)
.|-+|||+.||-.-
T Consensus 305 ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 305 SSAVGAAILAASLD 318 (336)
T ss_pred cchHHHHHHhhhhc
Confidence 99999999997543
No 10
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=97.51 E-value=0.0071 Score=56.11 Aligned_cols=79 Identities=25% Similarity=0.229 Sum_probs=57.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEE---c
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---S 260 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~---~ 260 (284)
.|..+.+++++..+.+|+.++...+. -.|-+.|++.+..+.|.+.+++.+++..-+.....+.+.. .
T Consensus 227 ~a~~i~~~~~~~L~~~i~~~~~~~dP----------~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~ 296 (318)
T TIGR00744 227 VAVDSYREVARWAGAGLADLASLFNP----------SAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLG 296 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC----------CEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccC
Confidence 56678899999999999999987754 2578899999888999999999998754321112333433 3
Q ss_pred CCchHHHHHHHH
Q 023317 261 NDGSGIGAALLA 272 (284)
Q Consensus 261 ~dgSg~GAAl~a 272 (284)
++...+|||..+
T Consensus 297 ~~~~~~Gaa~~~ 308 (318)
T TIGR00744 297 NDAGLVGAADLA 308 (318)
T ss_pred CchhhHHHHHHH
Confidence 456788888664
No 11
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.39 E-value=0.0011 Score=60.41 Aligned_cols=79 Identities=27% Similarity=0.407 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCC
Q 023317 183 ELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSND 262 (284)
Q Consensus 183 ~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~d 262 (284)
.++..|..+++...+-.+.+++.+..... .+ |.+-||++++.+ |.+.+++.|++-++.. .-..+...+.
T Consensus 193 ~~a~~Il~~a~~~la~~i~~~~~~~~~~~------~~--v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~ 261 (271)
T PF01869_consen 193 EVARDILAEAADELAELIKAVLKRLGPEK------EP--VVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQY 261 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCTCCC------CS--EEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCC------Ce--EEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCc
Confidence 45667888999999999999988886642 12 999999998855 5555777776655431 1245556778
Q ss_pred chHHHHHHHH
Q 023317 263 GSGIGAALLA 272 (284)
Q Consensus 263 gSg~GAAl~a 272 (284)
-...|||+.|
T Consensus 262 ~~a~GAallA 271 (271)
T PF01869_consen 262 DPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHhC
Confidence 8899999876
No 12
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=96.91 E-value=0.055 Score=49.98 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=55.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEE---c
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---S 260 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~---~ 260 (284)
.+..+.+|+++..|.+|+.++...+.. .|-+.|.+.+ .|.|.+.+++.+++..-+.. ..+.+.. .
T Consensus 221 ~a~~~~~~~~~~la~~l~n~~~~ldP~----------~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~ 288 (303)
T PRK13310 221 QAVAHVERYLDLLAICLGNILTIVDPH----------LVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHG 288 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC----------EEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccC
Confidence 455778899999999999999988753 5666788777 68888999999986543211 2344444 3
Q ss_pred CCchHHHHHHHH
Q 023317 261 NDGSGIGAALLA 272 (284)
Q Consensus 261 ~dgSg~GAAl~a 272 (284)
+|...+|||..+
T Consensus 289 ~~a~~~GAa~~~ 300 (303)
T PRK13310 289 DAGGVRGAAFLH 300 (303)
T ss_pred chHHHHhHHHHh
Confidence 455778888765
No 13
>PRK09557 fructokinase; Reviewed
Probab=96.48 E-value=0.27 Score=45.38 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=52.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEE---c
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH---S 260 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~---~ 260 (284)
.+..+.+++++..|.+|+.++...+.. .|-+.|.+.+. +.|.+.+++.+++...+.. ..+.+.. .
T Consensus 220 ~a~~~l~~~~~~La~~l~~l~~~ldP~----------~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~ 287 (301)
T PRK09557 220 VAELAFRRYEDRLAKSLAHVINILDPD----------VIVLGGGMSNV-DRLYPTLPALLKQYVFGGE-CETPVRKALHG 287 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC----------EEEEcCcccch-HHHHHHHHHHHHHHhcccc-cCCeEEEcccC
Confidence 455788999999999999999877652 56677887774 7777888888886543211 1333333 4
Q ss_pred CCchHHHHHHH
Q 023317 261 NDGSGIGAALL 271 (284)
Q Consensus 261 ~dgSg~GAAl~ 271 (284)
++...+|||..
T Consensus 288 ~~a~~~GAa~~ 298 (301)
T PRK09557 288 DSSGVRGAAWL 298 (301)
T ss_pred CchhhhhhhHh
Confidence 56678888764
No 14
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=96.11 E-value=0.28 Score=45.00 Aligned_cols=181 Identities=17% Similarity=0.155 Sum_probs=102.9
Q ss_pred EEEEechHHHHhcccc---CCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCCCChhhHh
Q 023317 11 AALVNDTIGTLAGGRY---HNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEA 87 (284)
Q Consensus 11 ~AivNDTVaTlla~~y---~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~~T~~D~~ 87 (284)
+.+.||..+..++-.+ .+.+..+-+-+|||.-++++-+-.-..-..+....-++|.++-+ |
T Consensus 100 v~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~giv~~G~~~~G~~g~AGEiGh~~v~~~-g--------------- 163 (291)
T PRK05082 100 TIALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGIVLNGKLLTGPGGLAGHIGHTLADPH-G--------------- 163 (291)
T ss_pred EEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEEEECCEEeeCCCCccccccceEecCC-C---------------
Confidence 5699999988776543 35567889999999999998642111111111111233333210 0
Q ss_pred HhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhh
Q 023317 88 LDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDI 167 (284)
Q Consensus 88 lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~ 167 (284)
..-.--....+|.++|+..| .|. .+. ++ ++ . ....+.+...+
T Consensus 164 --~~c~CG~~GclE~~~S~~al---~~~-----~~~--~~----~~-------~--------------~~~~i~~~~~~- 205 (291)
T PRK05082 164 --PVCGCGRRGCVEAIASGRAI---AAA-----AQG--WL----AG-------C--------------DAKTIFERAGQ- 205 (291)
T ss_pred --CCCCCCCcCchhhhcCHHHH---HHH-----HHH--hh----cC-------C--------------CHHHHHHHHHc-
Confidence 00011123588999998766 222 111 00 00 0 11111111111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHh
Q 023317 168 LEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELL 247 (284)
Q Consensus 168 ~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~ 247 (284)
- | ..+..+.+++++..|.+|+.++...+.. .|-+.|.+.. .+.|.+.+++++++..
T Consensus 206 -----g---d-----~~a~~~~~~~~~~la~~l~~l~~~~dpe----------~IvlgG~~~~-~~~~~~~i~~~l~~~~ 261 (291)
T PRK05082 206 -----G---D-----EQAQALINRSAQAIARLIADLKATLDCQ----------CVVLGGSVGL-AEGYLELVQAYLAQEP 261 (291)
T ss_pred -----C---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC----------EEEEcCcccc-HHHHHHHHHHHHHhcc
Confidence 0 1 2355678899999999999999988753 5666787654 5778888999998752
Q ss_pred CCCCcccEEEEEc---CCchHHHHHHHH
Q 023317 248 GEEVSETVVIEHS---NDGSGIGAALLA 272 (284)
Q Consensus 248 ~~~~~~~v~l~~~---~dgSg~GAAl~a 272 (284)
.. ..+.+..+ +|.+.+|||..+
T Consensus 262 ~~---~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 262 AI---YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred cc---cCCeEEECccCCchhhhhHHHHh
Confidence 21 13445544 455677887654
No 15
>PRK09698 D-allose kinase; Provisional
Probab=96.07 E-value=0.18 Score=46.51 Aligned_cols=74 Identities=20% Similarity=0.158 Sum_probs=50.3
Q ss_pred HHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhC-CCCcccEEEEE---cCCch
Q 023317 189 ATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLG-EEVSETVVIEH---SNDGS 264 (284)
Q Consensus 189 ~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~-~~~~~~v~l~~---~~dgS 264 (284)
.++.++.+|.+|+.++...+. -.|-+.|.+.+..+.|.+.+++.+++.+- +.....+.+.. .+|..
T Consensus 217 ~~~~~~~la~~l~~li~~ldP----------~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~ 286 (302)
T PRK09698 217 IQSLLENLARAIATSINLFDP----------DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNG 286 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhCC----------CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCccc
Confidence 355667788888888876654 26777898888777788889888887653 21122344444 34556
Q ss_pred HHHHHHHH
Q 023317 265 GIGAALLA 272 (284)
Q Consensus 265 g~GAAl~a 272 (284)
.+|||..+
T Consensus 287 ~~GAa~~~ 294 (302)
T PRK09698 287 AQGAAILA 294 (302)
T ss_pred HHhHHHHH
Confidence 78998775
No 16
>PRK12408 glucokinase; Provisional
Probab=95.56 E-value=0.75 Score=43.51 Aligned_cols=204 Identities=16% Similarity=0.097 Sum_probs=114.2
Q ss_pred CcceEEEEEechHHHHhccccC-------------CC-CceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecc
Q 023317 6 LDMRVAALVNDTIGTLAGGRYH-------------NK-DAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEW 71 (284)
Q Consensus 6 ~~v~v~AivNDTVaTlla~~y~-------------~~-~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEw 71 (284)
+.+..|.+.||.-+.-++-.+. +. ...+.+.+|||...+.+.+-. .+....=.|+
T Consensus 108 ~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiGggivi~g~-----------~g~~~~agE~ 176 (336)
T PRK12408 108 LGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLGAALWIPNG-----------GRPVVLPTEA 176 (336)
T ss_pred cCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcceEEEEEcCC-----------CceeeecCcc
Confidence 4454577999999999987665 22 467888889999999986421 2334456677
Q ss_pred cCcCCCCCCCChhhHhHhcc-CCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhc
Q 023317 72 GNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMH 150 (284)
Q Consensus 72 G~fg~~~l~~T~~D~~lD~~-S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~ 150 (284)
|... ..|.++....+-.. -...+.-.+|...||.-|..+.|..... .+ ..+ ..++.
T Consensus 177 GH~~--~~~~~~~~~~l~~~~~~~~~~~~~E~~~Sg~gL~~~~~~~~~~---~~-----~~~------~~~~~------- 233 (336)
T PRK12408 177 GQAA--LAAASELEMQLLQHLLRTRTHVPIEHVLSGPGLLNLYRALCAL---RG-----ATP------VHASP------- 233 (336)
T ss_pred cccc--CCCCCHHHHHHHHHHHhhCCceeHhheecHHHHHHHHHHHHhh---cC-----CCc------ccCCH-------
Confidence 7552 12233222111111 1223345699999999998777754210 00 000 00111
Q ss_pred cCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccce
Q 023317 151 HDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE 230 (284)
Q Consensus 151 ~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~ 230 (284)
..+++... .- .| ..|..+.++.++..|.+++-+....+.. .-|-+-|++-.
T Consensus 234 ----------~~v~~~a~---~g--gD-----~~A~~~~~~~~~~La~~i~nl~~~ldPe---------~GIvIGGGIs~ 284 (336)
T PRK12408 234 ----------AAITAAAL---AG--DD-----ALAHEALQVFCGFLGSVVGDMALAYGAR---------GGVYLAGGILP 284 (336)
T ss_pred ----------HHHHHHHH---hC--CC-----HHHHHHHHHHHHHHHHHHHHHHHHHCCC---------ceEEEECchhH
Confidence 11211100 00 00 3455677888899999999999888752 22567788865
Q ss_pred e-chhHHHH--HHHHHHHHh-CC-CCcccEEEEEcCCchHHHHHHHH
Q 023317 231 H-YTKFSAC--MQSTVKELL-GE-EVSETVVIEHSNDGSGIGAALLA 272 (284)
Q Consensus 231 ~-~p~f~~~--~~~~l~~l~-~~-~~~~~v~l~~~~dgSg~GAAl~a 272 (284)
. .+.|.+. +++.+++.. .+ ....+|.+..-.|...+|||..+
T Consensus 285 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 285 QIADFLARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred hHHhhhcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHH
Confidence 4 3444443 555555421 10 01235666666678888887443
No 17
>PRK00292 glk glucokinase; Provisional
Probab=95.50 E-value=0.92 Score=42.22 Aligned_cols=204 Identities=17% Similarity=0.144 Sum_probs=109.8
Q ss_pred CcceEEEEEechHHHHhcccc------------CC--CCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecc
Q 023317 6 LDMRVAALVNDTIGTLAGGRY------------HN--KDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEW 71 (284)
Q Consensus 6 ~~v~v~AivNDTVaTlla~~y------------~~--~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEw 71 (284)
+++..+.|.||.-+.-++-.+ .+ .+..+.+-+|||..++.+.+- + .+....-.|+
T Consensus 90 ~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGiG~giv~~g-----~------~g~~g~agE~ 158 (316)
T PRK00292 90 LGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGLGVAGLVPV-----D------GRWIVLPGEG 158 (316)
T ss_pred hCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcceEEEEEec-----C------CceEEccCCc
Confidence 445446799999998888653 11 256788889999999998641 1 2233455666
Q ss_pred cCcCCCCCCCChhhHhHhcc-CCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhc
Q 023317 72 GNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMH 150 (284)
Q Consensus 72 G~fg~~~l~~T~~D~~lD~~-S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~ 150 (284)
|... ..|.++-...+-+. -..-+.-.+|..+||.=|.++.|..... .+ . ++. .+
T Consensus 159 GH~~--~~~~~~~~~~~~~~~c~~~~~gclE~~~Sg~~L~~~~~~~~~~---~~-----~-~~~-----~~--------- 213 (316)
T PRK00292 159 GHVD--FAPRSEEEAQILQYLRAEFGHVSAERVLSGPGLVNLYRAICKA---DG-----R-EPE-----LL--------- 213 (316)
T ss_pred cccc--CCCCChHHHHHHHHHHHhcCCceeEeeecHHhHHHHHHHHHhh---cC-----C-Ccc-----cC---------
Confidence 6442 11222111110000 0112345799999999876655432110 00 0 000 00
Q ss_pred cCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccce
Q 023317 151 HDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE 230 (284)
Q Consensus 151 ~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~ 230 (284)
+...+.+...+ .| ..+|..+.+++++..|.+++.++...+.. . .|-+-|++..
T Consensus 214 -----~~~~i~~~a~~---------gd----d~~A~~~~~~~~~~lg~~i~~l~~~~~P~-------~--~vvi~Gg~~~ 266 (316)
T PRK00292 214 -----TPADITERALA---------GS----CPLCRRTLSLFCVILGRVAGNLALTLGAR-------G--GVYIAGGIVP 266 (316)
T ss_pred -----CHHHHHHHHHh---------CC----ChHHHHHHHHHHHHHHHHHHHHHHHhcCC-------c--eEEEeCchHH
Confidence 11111111111 00 04566788999999999999999988752 1 2345566653
Q ss_pred -echhHHH-HHHHHHHH-H-hC-CCCcccEEEEEcCCchHHHHHHHH
Q 023317 231 -HYTKFSA-CMQSTVKE-L-LG-EEVSETVVIEHSNDGSGIGAALLA 272 (284)
Q Consensus 231 -~~p~f~~-~~~~~l~~-l-~~-~~~~~~v~l~~~~dgSg~GAAl~a 272 (284)
..+.|.+ .+.+.+.+ . .. .-...+|.+..-+|...+|||..+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~ 313 (316)
T PRK00292 267 RFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYL 313 (316)
T ss_pred hHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHH
Confidence 3333333 33333332 1 11 001246777888899999998765
No 18
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=94.69 E-value=1 Score=46.27 Aligned_cols=201 Identities=14% Similarity=0.135 Sum_probs=109.9
Q ss_pred CcceEEEEEechHHHHhcc---------ccC---CCCceEEEEecc--cccceeecccCCCCCcCCCCCCCCcEEEEecc
Q 023317 6 LDMRVAALVNDTIGTLAGG---------RYH---NKDAIAAVILGT--GTNAAYVERAHAIPKWHGLLPKSGEMVINMEW 71 (284)
Q Consensus 6 ~~v~v~AivNDTVaTlla~---------~y~---~~~~~iGlIlGT--GtNacY~e~~~~i~k~~~~~~~~~~miiNtEw 71 (284)
+.+.++.+.||--+.-++- .+- ..+..+.+++|| |...|-+-.. ..+.++.-+|+
T Consensus 105 ~g~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGlG~a~lv~~-----------~g~~~~~g~E~ 173 (638)
T PRK14101 105 LGFDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGLGVSGLIPA-----------DDRWIALGSEG 173 (638)
T ss_pred cCCCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccceeeEEEec-----------CCeeEECCCCc
Confidence 4566788999999988883 111 223457788755 5664433111 11223445688
Q ss_pred cCcCCCCCCCChhhHhH-hccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhc
Q 023317 72 GNFRSSHLPLTEYDEAL-DTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMH 150 (284)
Q Consensus 72 G~fg~~~l~~T~~D~~l-D~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~ 150 (284)
|...- .|.++-...+ ...-.+.|...+|..+||.-|..+.|..... .+ . + .+-.++.
T Consensus 174 GH~~~--~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~~---~~-----~-~----~~~~~~~------- 231 (638)
T PRK14101 174 GHASF--APQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAAR---DK-----K-R----VAANVDT------- 231 (638)
T ss_pred cccCC--CCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHhh---cC-----C-C----CcCcCCH-------
Confidence 77631 2333211111 1011123456799999999998887764221 00 0 0 0000111
Q ss_pred cCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccce
Q 023317 151 HDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFE 230 (284)
Q Consensus 151 ~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~ 230 (284)
..+++. .. .- | .+|..+.++.+++.|.+++-+....+.. . .|-+-|++-.
T Consensus 232 ----------~~i~~~-a~--~g---d-----~~A~~~~~~~~~~lg~~~~nl~~~~~~p-------~--~vvigGGIs~ 281 (638)
T PRK14101 232 ----------AEIVER-AH--AG---D-----ALALEAVECFCAILGTFAGNLALTLGAL-------G--GIYIGGGVVP 281 (638)
T ss_pred ----------HHHHHH-HH--CC---C-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC-------C--cEEEeCcHHH
Confidence 112211 00 00 1 5666788889999999999998888632 1 3456778764
Q ss_pred ec------hhHHHHHHHH--HHHHhCCCCcccEEEEEcCCchHHHHHHHH
Q 023317 231 HY------TKFSACMQST--VKELLGEEVSETVVIEHSNDGSGIGAALLA 272 (284)
Q Consensus 231 ~~------p~f~~~~~~~--l~~l~~~~~~~~v~l~~~~dgSg~GAAl~a 272 (284)
+. +.|++.++.. +.+++. ..+|.+...++-..+|||..+
T Consensus 282 ~~~~~l~~~~f~~~f~~kg~~~~~~~---~ipv~~i~~~~~~l~Gaa~~~ 328 (638)
T PRK14101 282 KLGELFTRSSFRARFEAKGRFEAYLA---NIPTYLITAEYPAFLGVSAIL 328 (638)
T ss_pred HHHHHcChHHHHHHHHhCCChHHHHh---cCCEEEEeCCChhHHHHHHHH
Confidence 42 3344444331 111211 258999999999999996544
No 19
>PTZ00288 glucokinase 1; Provisional
Probab=93.01 E-value=7.6 Score=37.97 Aligned_cols=80 Identities=11% Similarity=-0.005 Sum_probs=49.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceec------hh---HHHHHHH--HH--HHHhCCC
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHY------TK---FSACMQS--TV--KELLGEE 250 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~------p~---f~~~~~~--~l--~~l~~~~ 250 (284)
.|..+.++.+++.+.++.-+...++.. . |-+-|....+. +. |.+.+.. .+ .+++..
T Consensus 299 ~A~~al~~f~~~LG~~~~nlal~l~P~--------~--VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~~- 367 (405)
T PTZ00288 299 AAVKAMKRHYKYLMRLAAEISMQFLPL--------T--VVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLSR- 367 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC--------E--EEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHhc-
Confidence 466788889999999998888888752 2 44445333322 22 2333222 11 333322
Q ss_pred CcccEEE-EEcCCchHHHHHHHHHHhc
Q 023317 251 VSETVVI-EHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 251 ~~~~v~l-~~~~dgSg~GAAl~aA~~~ 276 (284)
.+|.+ ...++-...|||..++...
T Consensus 368 --ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 368 --TTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred --CceEEEEeCCCccHHHHHHHHHHhh
Confidence 46766 8889999999998885443
No 20
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.06 E-value=6.4 Score=36.32 Aligned_cols=191 Identities=20% Similarity=0.200 Sum_probs=109.4
Q ss_pred EEEEEechHHHHhccccC----CCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCCCChhh
Q 023317 10 VAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYD 85 (284)
Q Consensus 10 v~AivNDTVaTlla~~y~----~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~~T~~D 85 (284)
.|.|-||+.+.-++-.+. +.+..+-+.+|||.-++++.+=.-..-..+....-++|+++-.+. -
T Consensus 109 Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~-c----------- 176 (314)
T COG1940 109 PVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE-C----------- 176 (314)
T ss_pred CEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccceeEEEEECCEEeecCCCccccccceEECCCCc-c-----------
Confidence 355889999999998885 357899999999999999875221111111111224555544333 0
Q ss_pred HhHhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhh
Q 023317 86 EALDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLK 165 (284)
Q Consensus 86 ~~lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~ 165 (284)
.-+..-.+|...|+.-+-+.. .+. + +..... . +.+.+.+...
T Consensus 177 -------~cG~~GclE~~as~~al~~~~-------~~~---~----~~~~~~---~--------------~~~~i~~~a~ 218 (314)
T COG1940 177 -------GCGRRGCLETYASGRAILRRA-------AEA---L----ESEAGE---L--------------TAKDIFELAA 218 (314)
T ss_pred -------CCCCCCchHHhccHHHHHHHH-------Hhh---c----cccccC---c--------------CHHHHHHHHH
Confidence 122234567777776653332 000 0 000000 0 1111111111
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEec-ccceechhHHHHHHHHHH
Q 023317 166 DILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDG-GLFEHYTKFSACMQSTVK 244 (284)
Q Consensus 166 ~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdG-S~~~~~p~f~~~~~~~l~ 244 (284)
. . -..+..+.++.+...+.+|+.++.-.+.. .|-+-| ++-...+.+.+.+++.+.
T Consensus 219 ~----g----------d~~a~~~~~~~~~~la~~ianl~~~~~P~----------~IvigG~g~~~~~~~~~~~l~~~~~ 274 (314)
T COG1940 219 A----G----------DPLAKEVIERAADYLARGLANLINLLDPE----------VIVIGGGGVSALGDLLLPRLRKLLA 274 (314)
T ss_pred c----C----------CHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------eEEEECcccccchhHHHHHHHHHHH
Confidence 1 0 03455778899999999999999988653 455667 777777888888888777
Q ss_pred HHhCC-CCc-ccEEEEEc-CCchHHHHHHHHHH
Q 023317 245 ELLGE-EVS-ETVVIEHS-NDGSGIGAALLAAS 274 (284)
Q Consensus 245 ~l~~~-~~~-~~v~l~~~-~dgSg~GAAl~aA~ 274 (284)
..... ... ..+..... .+.+.+|||..+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~~ 307 (314)
T COG1940 275 KYLFPPVLRPRIVEAALGGNDAGLIGAALLALL 307 (314)
T ss_pred HhhcchhcccchhhhhcccccccchhHHHHHHH
Confidence 65432 111 11222223 67888898877643
No 21
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=90.98 E-value=2.3 Score=36.20 Aligned_cols=49 Identities=31% Similarity=0.384 Sum_probs=38.5
Q ss_pred ceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 219 KSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 219 ~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.-.|-+.|+.. +.|.+.+++-+ +++ ++|.....++++.+|||++|+++.
T Consensus 150 ~~~i~~~GG~~-~n~~~~q~~Ad----vl~----~~V~~~~~~e~~a~GaA~~A~~a~ 198 (198)
T PF02782_consen 150 IRRIRVSGGGA-KNPLWMQILAD----VLG----RPVVRPEVEEASALGAALLAAVAV 198 (198)
T ss_dssp ESEEEEESGGG-GSHHHHHHHHH----HHT----SEEEEESSSTHHHHHHHHHHHHHT
T ss_pred ceeeEeccccc-cChHHHHHHHH----HhC----CceEeCCCCchHHHHHHHHHHhhC
Confidence 34677789988 67888887665 444 478888889999999999999863
No 22
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=90.90 E-value=9 Score=35.67 Aligned_cols=201 Identities=19% Similarity=0.174 Sum_probs=104.9
Q ss_pred CcceEEEEEechHHHHhcc--------ccC----CCCceEEEEe--cccccceeecccCCCCCcCCCCCCCCcE-EEEec
Q 023317 6 LDMRVAALVNDTIGTLAGG--------RYH----NKDAIAAVIL--GTGTNAAYVERAHAIPKWHGLLPKSGEM-VINME 70 (284)
Q Consensus 6 ~~v~v~AivNDTVaTlla~--------~y~----~~~~~iGlIl--GTGtNacY~e~~~~i~k~~~~~~~~~~m-iiNtE 70 (284)
+.+..+.|.||--+.-++- .+. ..+..+.+++ |||...+.+.+.. .+++ ..-.|
T Consensus 89 ~g~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~~~vi~~~-----------~g~l~~~agE 157 (316)
T TIGR00749 89 LGFSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGVAHLIHQV-----------DGRWVVLPGE 157 (316)
T ss_pred cCCCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCceeeEEEEcC-----------CCCEEECCCC
Confidence 4444577999999988884 222 2344578889 5566665454210 1122 23445
Q ss_pred ccCcCCCCCCCChhhHh----HhccCCCCCceeeeeeccccchHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhh
Q 023317 71 WGNFRSSHLPLTEYDEA----LDTESLNPGEQIFEKIISGMYLGEIVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHM 146 (284)
Q Consensus 71 wG~fg~~~l~~T~~D~~----lD~~S~~pg~q~~EKmvsG~YLGEl~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~l 146 (284)
+|... ..|.++-+.. +.... +.-.+|..+||.-|..+.|...... +.. ... .. ....++
T Consensus 158 ~GH~~--~~~~~~~~~~~~~~l~~~~---~~g~~E~~~Sg~gl~~~~~~~~~~~---~~~---~~~-~~-~~~~~~---- 220 (316)
T TIGR00749 158 GGHVD--FAPNSELEAIILEYLRAKI---GHVSAERVLSGPGLVNIYEALVKAD---PER---QFN-KL-PQENLK---- 220 (316)
T ss_pred ccccc--CCCCCHHHHHHHHHHHHhc---CCceeeeeecHHHHHHHHHHHHhhc---Ccc---ccc-cc-ccccCC----
Confidence 55431 1122322221 11222 4457999999999988888653211 100 000 00 000011
Q ss_pred hhhccCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEec
Q 023317 147 SAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDG 226 (284)
Q Consensus 147 s~i~~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdG 226 (284)
.+.+++. ..- .+ | .+|..+.++.+++.|.+++-+....+... .|-+-|
T Consensus 221 -------------~~~I~~a-a~~--Gd--d-----~~A~~~~~~~~~~lg~~i~nl~~~ldpeg---------gv~v~G 268 (316)
T TIGR00749 221 -------------PKDISER-ALA--GS--C-----TDCRRALSLFCVIYGRFAGNLALNLGTRG---------GVYIAG 268 (316)
T ss_pred -------------HHHHHHH-HHc--CC--C-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC---------cEEEEC
Confidence 1222221 000 00 0 46777889999999999999999887531 233555
Q ss_pred cccee------chhHHHHHHHH--HHHHhCCCCcccEEEEEcCCchHHHHH
Q 023317 227 GLFEH------YTKFSACMQST--VKELLGEEVSETVVIEHSNDGSGIGAA 269 (284)
Q Consensus 227 S~~~~------~p~f~~~~~~~--l~~l~~~~~~~~v~l~~~~dgSg~GAA 269 (284)
++..+ .+.|++.+.+. ++.++. ..+|.+...++-...|||
T Consensus 269 G~~~~~~~~~~~~~f~~~~~~~~~~~~~~~---~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 269 GIVPRFIEFFKASGFRAAFEDKGRMKEYVH---DIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred cHHHhHHhhhCchHHHHHHhccCChhHHHh---hCCEEEEcCCCccccCCC
Confidence 55422 22344443321 111111 258999999999999985
No 23
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=87.18 E-value=16 Score=34.50 Aligned_cols=97 Identities=26% Similarity=0.247 Sum_probs=57.6
Q ss_pred CcceEEEEEechHHHHhccccC-------------CCCceEEEE-ecccccceeecccCCCCCcCCCCCCCCcEEEEecc
Q 023317 6 LDMRVAALVNDTIGTLAGGRYH-------------NKDAIAAVI-LGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEW 71 (284)
Q Consensus 6 ~~v~v~AivNDTVaTlla~~y~-------------~~~~~iGlI-lGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEw 71 (284)
+.++-+.++||=.|.-.+.... ++...+.+| .|||.+.|++-+. ..+..++-+|.
T Consensus 90 lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a~l~~~-----------~~~~~v~~sEg 158 (316)
T PF02685_consen 90 LGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVALLVPD-----------GDGYYVLPSEG 158 (316)
T ss_dssp CT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEEEEEEE-----------TTEEEEEEE-G
T ss_pred hCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEEEEEec-----------CCceEeCCCcc
Confidence 3344577999977765544332 123333333 5999999999763 23456999999
Q ss_pred cCcCCCCCCCChhhHhHhcc-CCCCCceeeeeeccccchHHHHHH
Q 023317 72 GNFRSSHLPLTEYDEALDTE-SLNPGEQIFEKIISGMYLGEIVRR 115 (284)
Q Consensus 72 G~fg~~~l~~T~~D~~lD~~-S~~pg~q~~EKmvsG~YLGEl~R~ 115 (284)
|.-+ ..|.++.+..+=+. ...-+.=.+|..+||+=|..|.+-
T Consensus 159 GH~~--fap~~~~e~~l~~~l~~~~~~vs~E~vlSG~GL~~ly~~ 201 (316)
T PF02685_consen 159 GHVD--FAPRTDEEAELLRFLRRRYGRVSVERVLSGRGLENLYRF 201 (316)
T ss_dssp GGSB-----SSHHHHHHHHHHHHHCTS-BHHHCSSHHHHHHHHHH
T ss_pred cccc--CCCCCHHHHHHHHHHHHhcCCceeEeecchhhHHHHHHH
Confidence 9874 46778766555321 111155678999999877666554
No 24
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=85.67 E-value=32 Score=32.34 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=86.6
Q ss_pred EEEEEechHHHHhccccCCCCceEEEEecccccceeecccCCCCCcCCCCCCCCcEEEEecccCcCCCCCCCChhhHhHh
Q 023317 10 VAALVNDTIGTLAGGRYHNKDAIAAVILGTGTNAAYVERAHAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDEALD 89 (284)
Q Consensus 10 v~AivNDTVaTlla~~y~~~~~~iGlIlGTGtNacY~e~~~~i~k~~~~~~~~~~miiNtEwG~fg~~~l~~T~~D~~lD 89 (284)
-+-|.||....|.++-..+.-+ =+|+|||+ +|+-. +.++...-=-||.+ +. |
T Consensus 99 ~v~v~~Dg~iAl~ga~~~~~Gi--i~i~GTGS--i~~~~------------~gg~~~r~GG~Gf~------Ig------D 150 (301)
T COG2971 99 KVDVENDGLIALRGALGDDDGI--IVIAGTGS--IGYGR------------KGGRRERVGGWGFP------IG------D 150 (301)
T ss_pred eEEEecChHHHHhhccCCCCCE--EEEecCCe--EEEEE------------eCCeeEEecCcCcc------cc------c
Confidence 4669999999999885544333 36889995 44432 22344444456655 11 1
Q ss_pred ccCCCCCceeeeeeccccchHH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhc
Q 023317 90 TESLNPGEQIFEKIISGMYLGE-IVRRVLCRMAEEANFFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDIL 168 (284)
Q Consensus 90 ~~S~~pg~q~~EKmvsG~YLGE-l~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~ 168 (284)
--||.|||. +++.+++. |.+..+. -.+..+.+..+.. |.+.+.....+.
T Consensus 151 -------------egSga~ig~~~L~~~lra-------~DG~~~~-----t~L~d~v~~~f~~----d~edlv~~~y~a- 200 (301)
T COG2971 151 -------------EGSGAWIGREALQEALRA-------FDGRREA-----TPLTDAVMAEFNL----DPEDLVAFIYKA- 200 (301)
T ss_pred -------------cchHHHHHHHHHHHHHHH-------hcCCccC-----ChHHHHHHHHhCC----CHHHHHHHHHhc-
Confidence 146778773 33333332 3333221 2245555555532 334444443321
Q ss_pred cCCCCCHHHHHHH-----------HHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHH
Q 023317 169 EISNTSLKMRKLV-----------VELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSA 237 (284)
Q Consensus 169 ~~~~~t~~d~~~v-----------r~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~ 237 (284)
.++.++...+ -.++..|.+.||..++ .+++...... ....+-+-|++++.+|.|.+
T Consensus 201 ---~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa~~i~----~~~~~l~~~~------g~~~l~l~GG~~~~~~~~~~ 267 (301)
T COG2971 201 ---GPGDKKIAALAPAVFEAARKGDPVAIRILKEAAAYIA----TLLEALSIFN------GSEKLSLLGGLAPSYPYYLS 267 (301)
T ss_pred ---CCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHhccc------CCceEEEeccccccchhhHH
Confidence 1222212111 1244556666764444 4444442111 34678899999999999999
Q ss_pred HHHHH
Q 023317 238 CMQST 242 (284)
Q Consensus 238 ~~~~~ 242 (284)
.+++.
T Consensus 268 ~~~~~ 272 (301)
T COG2971 268 LFRRA 272 (301)
T ss_pred HHHHH
Confidence 99874
No 25
>PRK00976 hypothetical protein; Provisional
Probab=77.36 E-value=27 Score=33.24 Aligned_cols=72 Identities=24% Similarity=0.263 Sum_probs=51.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCc
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 263 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dg 263 (284)
.|..+.++.+..+|.+|+.++..++. -.|.+-|++-+- +.+ .+.+.+++.+.+ . ...+-+|.
T Consensus 239 ~A~~aid~~~~~LA~~IAnLi~llDP----------e~IVLGGGVS~~-~e~--~L~~~I~e~l~~----~-~a~LG~dA 300 (326)
T PRK00976 239 KAKLAIDTLALFVAMEIASLLLLNPE----------DNVVLAGSVGEM-DEP--DVSERIKELLDK----K-VLVLGKES 300 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----------CEEEEcCccccC-chh--HHHHHHHHHhcc----c-ccccCCch
Confidence 57778899999999999999998863 268889998754 322 244444444322 1 34556799
Q ss_pred hHHHHHHHHH
Q 023317 264 SGIGAALLAA 273 (284)
Q Consensus 264 Sg~GAAl~aA 273 (284)
..+|||.+|-
T Consensus 301 GaiGAA~iA~ 310 (326)
T PRK00976 301 AAIGLALIAR 310 (326)
T ss_pred HHHHHHHHHH
Confidence 9999998874
No 26
>PRK04123 ribulokinase; Provisional
Probab=61.99 E-value=37 Score=34.14 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=36.9
Q ss_pred eEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 220 SVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 220 v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
-.|-+.|+..-+.+.+.+++.+ +++ .+|......+++.+|||++|+++.
T Consensus 440 ~~i~~~GGg~s~s~~w~Qi~AD----v~g----~pV~~~~~~e~~alGaA~lA~~~~ 488 (548)
T PRK04123 440 EEVIAAGGIARKNPVLMQIYAD----VLN----RPIQVVASDQCPALGAAIFAAVAA 488 (548)
T ss_pred ceEEEeCCCcccCHHHHHHHHH----hcC----CceEecCccccchHHHHHHHHHHh
Confidence 3577888886677877776665 444 467667778899999999998864
No 27
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=60.72 E-value=33 Score=34.64 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCc
Q 023317 173 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVS 252 (284)
Q Consensus 173 ~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~ 252 (284)
++.++. .|.++++|.-+...+..+ |.++. ..+--++.++|++-+. |.|.++..+ ++|
T Consensus 383 ts~~hi--a~A~leai~fqtr~Il~a--------m~~~~----~~~i~~L~~~GG~s~N-~ll~Q~~AD----i~g---- 439 (516)
T KOG2517|consen 383 TSKEHL--ARAALEAIAFQTREILEA--------MERDG----GHPISTLRVCGGLSKN-PLLMQLQAD----ILG---- 439 (516)
T ss_pred CCHHHH--HHHHHHHHHHHHHHHHHH--------HHHhc----CCCcceeeeccccccC-HHHHHHHHH----HhC----
Confidence 444544 347777776665554433 43331 1123458999998665 777766665 554
Q ss_pred ccEEEEEcCCchHHHHHHHHHHhcchh
Q 023317 253 ETVVIEHSNDGSGIGAALLAASHSQYL 279 (284)
Q Consensus 253 ~~v~l~~~~dgSg~GAAl~aA~~~~~~ 279 (284)
.+|.+...-|..++|||++|++++.+.
T Consensus 440 ~pv~~p~~~e~~~~GaA~l~~~a~~~~ 466 (516)
T KOG2517|consen 440 LPVVRPQDVEAVALGAAMLAGAASGKW 466 (516)
T ss_pred CccccccchhHHHHHHHHHHHhhcCCc
Confidence 367777777889999999999998873
No 28
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=57.20 E-value=60 Score=32.26 Aligned_cols=47 Identities=21% Similarity=0.393 Sum_probs=34.6
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|..- +++.+.+++.+ +++ .+|+.....+++.+|||++|+++.
T Consensus 404 ~i~~~GGga-~s~~w~Qi~Ad----v~g----~pv~~~~~~e~~a~GaA~la~~~~ 450 (505)
T TIGR01314 404 MIQATGGFA-SSEVWRQMMSD----IFE----QEIVVPESYESSCLGACILGLKAL 450 (505)
T ss_pred EEEEecCcc-cCHHHHHHHHH----HcC----CeeEecCCCCcchHHHHHHHHHhc
Confidence 455666643 66777777665 444 478888888999999999998876
No 29
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=55.71 E-value=15 Score=23.56 Aligned_cols=30 Identities=30% Similarity=0.379 Sum_probs=25.6
Q ss_pred cCCCCCceeeeeeccccchHHHHHHHHHHH
Q 023317 91 ESLNPGEQIFEKIISGMYLGEIVRRVLCRM 120 (284)
Q Consensus 91 ~S~~pg~q~~EKmvsG~YLGEl~R~il~~~ 120 (284)
..+||.+|+-|-=-...|+|-|+=-++.-+
T Consensus 3 ~~~NpN~q~VELNRTSLy~GlLlifvl~vL 32 (39)
T PRK00753 3 RNPNPNKQPVELNRTSLYLGLLLVFVLGIL 32 (39)
T ss_pred CCCCCCCCCceechhhHHHHHHHHHHHHHH
Confidence 367999999999999999999987776654
No 30
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=55.46 E-value=73 Score=31.10 Aligned_cols=48 Identities=27% Similarity=0.403 Sum_probs=35.6
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
.|-+.|+.- +++.+.+++.+ +++ ++|.....++++.+|||++|+++.-
T Consensus 393 ~i~~~GG~s-~s~~~~Q~~Ad----v~g----~pv~~~~~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 393 SIRLIGGGA-KSPAWRQMLAD----IFG----TPVDVPEGEEGPALGAAILAAWALG 440 (481)
T ss_pred eEEEecccc-CCHHHHHHHHH----HhC----CceeecCCCcchHHHHHHHHHHhcC
Confidence 466777763 66777766665 444 3677777889999999999988764
No 31
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=55.24 E-value=13 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=18.4
Q ss_pred CCCCCceeeeeeccccchHHHHHHHHHHHH
Q 023317 92 SLNPGEQIFEKIISGMYLGEIVRRVLCRMA 121 (284)
Q Consensus 92 S~~pg~q~~EKmvsG~YLGEl~R~il~~~~ 121 (284)
++||.+|+-|-=-+..|+|-|+=.++--+.
T Consensus 2 ~~Npn~q~VELNRTSLY~GLllifvl~vLF 31 (37)
T PF02419_consen 2 RPNPNKQPVELNRTSLYWGLLLIFVLAVLF 31 (37)
T ss_dssp ---TT---BE--CCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccchhHHhHHHHHHHHHHHHHHh
Confidence 579999999999999999998877766543
No 32
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=54.78 E-value=72 Score=31.83 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=34.5
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|.. .+.+.+.+++.+ +++ ++|+.....+++.+|||++|+++.
T Consensus 412 ~i~~~GGg-a~s~~w~Qi~AD----vlg----~pV~~~~~~e~~alGaA~lA~~~~ 458 (520)
T PRK10939 412 SLVFAGGG-SKGKLWSQILAD----VTG----LPVKVPVVKEATALGCAIAAGVGA 458 (520)
T ss_pred EEEEeCCc-ccCHHHHHHHHH----hcC----CeeEEecccCchHHHHHHHHHHHh
Confidence 45566663 566777766665 454 478888888999999999998875
No 33
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=53.46 E-value=36 Score=31.90 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCceeeeeecc--ccchHHHHHHHHHHHHHhcCC-CCC-CCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhccC
Q 023317 95 PGEQIFEKIIS--GMYLGEIVRRVLCRMAEEANF-FGD-TVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEI 170 (284)
Q Consensus 95 pg~q~~EKmvs--G~YLGEl~R~il~~~~~~~~l-f~~-~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~ 170 (284)
+.+++=+|.-+ |+||-+..|..=+++-+-+.+ |.. .-|..+...... . -..++.+.+.+ |.
T Consensus 149 ~dF~MNdkCAAGTGrFLE~~A~~Lgi~leel~~~a~~~~~~p~~Iss~CtV--------F-----AeSevi~l~~~--G~ 213 (293)
T TIGR03192 149 TNFLMNDKCAAGTGRGMEVISDLMQIPIADLGPRSFDVETEPEAVSSICVV--------F-----AKSEALGLLKA--GY 213 (293)
T ss_pred eeeeecCcccccccHHHHHHHHHcCCCHHHHHHHHHhcCCCCCCcCCcceE--------e-----ccHhHHHHHHC--CC
Confidence 34555566664 588888887743333221211 222 234455544431 0 01123333332 22
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHH
Q 023317 171 SNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTV 243 (284)
Q Consensus 171 ~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l 243 (284)
+.+ .++.-||++|.+|- +.++.+.+.. + .|...|.+-+. |.+++.+++.|
T Consensus 214 ---~~e--dI~aGl~~sia~rv--------~~~~~~~~i~-------~--~v~~~GGva~N-~~l~~al~~~L 263 (293)
T TIGR03192 214 ---TKN--MVIAAYCQAMAERV--------VSLLERIGVE-------E--GFFITGGIAKN-PGVVKRIERIL 263 (293)
T ss_pred ---CHH--HHHHHHHHHHHHHH--------HHHhcccCCC-------C--CEEEECccccc-HHHHHHHHHHh
Confidence 334 37889999999993 3344444321 1 36888886544 77777776644
No 34
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=53.32 E-value=73 Score=31.28 Aligned_cols=47 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|+. -++|.+.+++.+ +++ .+|......+++.+|||++|+++.
T Consensus 396 ~i~~~GGg-a~s~~w~Qi~Ad----v~g----~pV~~~~~~e~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 396 ELLLVGGG-SKNTLWNQIRAN----MLD----IPVKVVDDAETTVAGAAMFGFYGV 442 (465)
T ss_pred eEEEecCc-cCCHHHHHHhhh----hcC----CeeEeccCCcchHHHHHHHHHHhc
Confidence 45566664 466777776655 444 468777778899999999999876
No 35
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=49.16 E-value=75 Score=32.28 Aligned_cols=66 Identities=23% Similarity=0.308 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 197 AAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 197 aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
|-+.-.|+..+.+.. ..-=+|-+-|+. .|+|-+.+.+-+. .+ +.|.+..+++...+|+|+.+|+|.
T Consensus 415 A~GtR~Iie~~~~~g-----~~Id~l~~sGG~-~KN~llmql~aDv----tg----~~v~i~~s~~a~llGsAm~~avAa 480 (544)
T COG1069 415 AFGTRAIIETFEDQG-----IAIDTLFASGGI-RKNPLLMQLYADV----TG----RPVVIPASDQAVLLGAAMFAAVAA 480 (544)
T ss_pred HHhHHHHHHHHHHcC-----CeeeEEEecCCc-ccCHHHHHHHHHh----cC----CeEEeecccchhhhHHHHHHHHHh
Confidence 445566777776532 133468888999 8888877666553 33 589999999999999999999886
No 36
>CHL00038 psbL photosystem II protein L
Probab=48.26 E-value=21 Score=22.86 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=25.7
Q ss_pred CCCCCceeeeeeccccchHHHHHHHHHHHH
Q 023317 92 SLNPGEQIFEKIISGMYLGEIVRRVLCRMA 121 (284)
Q Consensus 92 S~~pg~q~~EKmvsG~YLGEl~R~il~~~~ 121 (284)
.+||.+|+-|-=-...|+|-|+=-++.-+.
T Consensus 3 ~~NPN~q~VELNRTSLy~GLLlifvl~vlf 32 (38)
T CHL00038 3 QSNPNKQNVELNRTSLYWGLLLIFVLAVLF 32 (38)
T ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 579999999999999999999877776554
No 37
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=48.18 E-value=65 Score=32.33 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.0
Q ss_pred eEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 220 SVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 220 v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
-.|-+.|+.--+.+.+.+++.+ +++ .+|+.....+++.+|||++|+++.-
T Consensus 437 ~~i~~~GGg~a~s~~w~Qi~Ad----v~g----~pV~~~~~~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 437 EELMAAGGIARKNPVIMQIYAD----VTN----RPLQIVASDQAPALGAAIFAAVAAG 486 (536)
T ss_pred ceEEEeCCccccCHHHHHHHHH----hhC----CeeEeccCCcchhHHHHHHHHHHcC
Confidence 3577888885555777765554 444 4787777788999999999988763
No 38
>PRK00047 glpK glycerol kinase; Provisional
Probab=47.72 E-value=95 Score=30.74 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=34.8
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|. -.++|.+.+++.+ +++ .+|.....++++.+|||++|+++.
T Consensus 406 ~i~~~GG-ga~s~~w~Qi~AD----vlg----~pV~~~~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 406 ELRVDGG-AVANNFLMQFQAD----ILG----VPVERPVVAETTALGAAYLAGLAV 452 (498)
T ss_pred eEEEecC-cccCHHHHHHHHH----hhC----CeeEecCcccchHHHHHHHHhhhc
Confidence 4556666 3577888777765 444 468777788899999999998875
No 39
>PRK10331 L-fuculokinase; Provisional
Probab=46.87 E-value=47 Score=32.66 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=34.1
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|+. -++|.+.+++.+ +++ .+|+.....+++.+|||++|+++.
T Consensus 392 ~i~~~GGg-a~s~~w~Qi~Ad----vlg----~pV~~~~~~e~~a~GaA~la~~~~ 438 (470)
T PRK10331 392 ELLLVGGG-SRNALWNQIKAN----MLD----IPIKVLDDAETTVAGAAMFGWYGV 438 (470)
T ss_pred eEEEEccc-ccCHHHHHHHHH----hcC----CeeEecCcccchHHHHHHHHHHhc
Confidence 45566665 466777766665 444 468777788899999999999875
No 40
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=46.11 E-value=1.1e+02 Score=30.33 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=33.3
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
.|-+.|..- +++.+.+++.+ +++ .+|.....++.+.+|||++||++.-
T Consensus 409 ~i~~~GG~a-~s~~w~Qi~Ad----v~g----~pV~~~~~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 409 SLRVDGGLT-KNKLLMQFQAD----ILG----KDIVVPEMAETTALGAALLAGLAVG 456 (504)
T ss_pred eEEEecccc-cCHHHHHHHHH----HhC----CceEecCcccchHHHHHHHHHhhcC
Confidence 355666554 45666655554 554 3677777888999999999998753
No 41
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=44.10 E-value=1.2e+02 Score=29.88 Aligned_cols=47 Identities=23% Similarity=0.350 Sum_probs=34.6
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|..- +++.+.+++.+ +++ .+|.....++++.+|||++|+++.
T Consensus 402 ~i~~~GGga-~s~~w~Qi~AD----v~g----~pv~~~~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 402 KLRVDGGMT-NNNLLMQFQAD----ILG----VPVVRPKVTETTALGAAYAAGLAV 448 (493)
T ss_pred eEEEecccc-cCHHHHHHHHH----hcC----CeeEecCCCcchHHHHHHHHHhhc
Confidence 466677643 66777777765 444 467777778999999999998875
No 42
>PRK03011 butyrate kinase; Provisional
Probab=44.10 E-value=2.5e+02 Score=26.91 Aligned_cols=70 Identities=20% Similarity=0.151 Sum_probs=51.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCc
Q 023317 184 LCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDG 263 (284)
Q Consensus 184 i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dg 263 (284)
.|+.+..+.++-+|-.|+++...++.+ +=.|.+.|++-+ .+.+++.+.+.+..+ .++.+.+++++
T Consensus 269 ~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~-~~~l~~~I~~~l~~~------~pv~i~p~~~e 333 (358)
T PRK03011 269 KAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAY-SKRLVERIKERVSFI------APVIVYPGEDE 333 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCcccc-CHHHHHHHHHHHHhh------CCeEEEeCCCH
Confidence 355667777777888888888888432 125778888877 799999999999876 25888888887
Q ss_pred hHHHH
Q 023317 264 SGIGA 268 (284)
Q Consensus 264 Sg~GA 268 (284)
.--+|
T Consensus 334 ~~A~a 338 (358)
T PRK03011 334 MEALA 338 (358)
T ss_pred HHHHH
Confidence 54443
No 43
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=42.93 E-value=1.3e+02 Score=30.29 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=35.3
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-++|+. -+.+.+.+++-+ +++ .+|+.....+++.+|||++|+++.
T Consensus 446 ~i~~~GGg-a~s~~w~Qi~AD----vlg----~pV~~~~~~e~~alGaA~lA~~~~ 492 (541)
T TIGR01315 446 SIFMSGGQ-CQNPLLMQLIAD----ACD----MPVLIPYVNEAVLHGAAMLGAKAA 492 (541)
T ss_pred EEEEecCc-ccCHHHHHHHHH----HHC----CeeEecChhHHHHHHHHHHHHHhc
Confidence 57788875 466777766665 444 478777888899999999998765
No 44
>PRK13317 pantothenate kinase; Provisional
Probab=42.86 E-value=2.3e+02 Score=26.13 Aligned_cols=52 Identities=13% Similarity=0.096 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHH
Q 023317 179 KLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 244 (284)
Q Consensus 179 ~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~ 244 (284)
.+.+.|..+|.+|-+.|+ ....+... .+ .|.+.|+.+.++|.+++.+.++++
T Consensus 197 DIaasl~~~v~~~I~~lA-----~~~ar~~~--------~~-~Ivf~G~gla~n~~l~~~l~~~l~ 248 (277)
T PRK13317 197 DILAGVIGLVGEVITTLS-----IQAAREKN--------IE-NIVYIGSTLTNNPLLQEIIESYTK 248 (277)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHhcC--------CC-eEEEECcccccCHHHHHHHHHHHh
Confidence 456667777777666553 22223322 12 799999988899999999887654
No 45
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=41.70 E-value=17 Score=32.59 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=20.1
Q ss_pred HHHHhccccCCCCceEE--------EEecccccc
Q 023317 18 IGTLAGGRYHNKDAIAA--------VILGTGTNA 43 (284)
Q Consensus 18 VaTlla~~y~~~~~~iG--------lIlGTGtNa 43 (284)
+|.|.|-.-.||.++|| .|+|||-|.
T Consensus 73 iA~LsA~RSkDpntqVGaCiv~~~n~iVg~GYNg 106 (230)
T KOG3127|consen 73 IAFLSAKRSKDPNTQVGACIVDRENRIVGTGYNG 106 (230)
T ss_pred HHHHHHHhccCcccceeeEEEcCCCEEEEeccCC
Confidence 78888888899999999 345555554
No 46
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=41.43 E-value=45 Score=29.83 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=30.8
Q ss_pred EEEEechHHHHhccccC----CCCceEEEEecccccceeecc
Q 023317 11 AALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVER 48 (284)
Q Consensus 11 ~AivNDTVaTlla~~y~----~~~~~iGlIlGTGtNacY~e~ 48 (284)
+.+-||.-+.-++-.+. +.+..+.+.+|||.-++.+-+
T Consensus 100 V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGiG~giv~~ 141 (256)
T PRK13311 100 VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGVGGGLIVN 141 (256)
T ss_pred EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCeEEEEEEC
Confidence 66999988777666553 457889999999999999875
No 47
>PRK15027 xylulokinase; Provisional
Probab=39.75 E-value=91 Score=30.78 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=31.7
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEE-EcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIE-HSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~-~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|+. .+++.+.+++.+ +++ ++|... ..++++.+|||++|+++.
T Consensus 389 ~i~~~GGg-a~s~~w~Qi~Ad----v~g----~pv~~~~~~~~~~a~GaA~lA~~~~ 436 (484)
T PRK15027 389 SVTLIGGG-ARSEYWRQMLAD----ISG----QQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_pred EEEEeCcc-cCCHHHHHHHHH----HhC----CeEEeecCCCcchHHHHHHHHHHhc
Confidence 46666774 466777666665 444 366444 345588999999999875
No 48
>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit. This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.
Probab=37.50 E-value=2.5e+02 Score=23.56 Aligned_cols=111 Identities=10% Similarity=-0.010 Sum_probs=69.4
Q ss_pred hhhhhccCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEE
Q 023317 145 HMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIAL 224 (284)
Q Consensus 145 ~ls~i~~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~Vgv 224 (284)
.+..+..++.-+.+.=.+++...++-. .+ -...+.+.-.+-.+--.+....+........+. ..+..+.
T Consensus 38 ~l~~~l~~p~i~~~~K~~~l~~l~~~~-~~---~~~~nfl~~l~~~~r~~~l~~I~~~~~~~~~~~-------~~~~~~~ 106 (172)
T TIGR01145 38 ELKKFLSNPLISAEKKKEFIKNVFGEQ-LD---ESSLNLLLLLAENGRLAALPDILDQFLKLSYEA-------QQTADVE 106 (172)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcc-CC---HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh-------cCEEEEE
Confidence 445555555555555555555544321 12 123344444455555556665566666555543 3466777
Q ss_pred ecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHH
Q 023317 225 DGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAA 269 (284)
Q Consensus 225 dGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAA 269 (284)
--|.+.-.+.-.+.+.+.+...++. ..|++...-|-+.+|.-
T Consensus 107 v~sa~~L~~~~~~~l~~~l~~~~~~---~~v~~~~~vd~~ligGi 148 (172)
T TIGR01145 107 VISAKPLTEDQQAKIAEKLEKITGA---AKVKLNCKVDKDLIGGV 148 (172)
T ss_pred EEEccCCCHHHHHHHHHHHHHHhCC---CeEEEEEeECHHHhCce
Confidence 7788889999999999999988764 36888877788888763
No 49
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=37.11 E-value=1.6e+02 Score=29.12 Aligned_cols=111 Identities=14% Similarity=0.207 Sum_probs=61.4
Q ss_pred ceeeeeecc--ccchHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhccCCCC
Q 023317 97 EQIFEKIIS--GMYLGEIVRRVLCRMAEEAN-FFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISNT 173 (284)
Q Consensus 97 ~q~~EKmvs--G~YLGEl~R~il~~~~~~~~-lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~ 173 (284)
+++=+|.-+ |+||-...|..=+++-+-+. -+...-|..+...... . -.+.+.+.+.+ |.
T Consensus 293 F~MNDKCAAGTGrFLE~mA~~Lgi~leEl~~lA~~a~~pv~ISS~CtV--------F-----AESEVIslla~--G~--- 354 (432)
T TIGR02259 293 FQMNDRCAAGCGRYLGYIADEMNMGLHELGPLAMKSSKPARINSTCTV--------F-----AGAELRDRLAL--GD--- 354 (432)
T ss_pred eeecCcccccchHHHHHHHHHcCCCHHHHHHHHhcCCCCCCcCCcceE--------E-----ehHHHHHHHHC--CC---
Confidence 455567664 58998888874333322121 2333444445444331 0 11223333333 22
Q ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHH
Q 023317 174 SLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 244 (284)
Q Consensus 174 t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~ 244 (284)
+.+ .++.-||++|..|.+.+ +.+.... .-.|.+.|.+.+. +.+.+.+++.+.
T Consensus 355 ~re--DIaAGL~~SIA~Rv~s~--------l~r~~~i--------~~~VvftGGvA~N-~gvv~aLe~~L~ 406 (432)
T TIGR02259 355 KRE--DILAGLHRAIILRAISI--------ISRSGGI--------TDQFTFTGGVAKN-EAAVKELRKLIK 406 (432)
T ss_pred CHH--HHHHHHHHHHHHHHHHH--------HhcccCC--------CCCEEEECCcccc-HHHHHHHHHHHc
Confidence 334 36779999999998766 3333221 2258899998644 778777777654
No 50
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=36.77 E-value=1.7e+02 Score=26.87 Aligned_cols=112 Identities=19% Similarity=0.175 Sum_probs=61.5
Q ss_pred Cceeeeeecc--ccchHHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhccCCC
Q 023317 96 GEQIFEKIIS--GMYLGEIVRRVLCRMAEEAN-FFGDTVPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISN 172 (284)
Q Consensus 96 g~q~~EKmvs--G~YLGEl~R~il~~~~~~~~-lf~~~~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~ 172 (284)
.+++=+|.-+ |+||-...|..=+++-+=+. -+...-|..+...... . -.+++.+.+.+ |.
T Consensus 122 ~f~MNdkCAAGTG~FLe~~A~~L~i~leel~~~a~~~~~~~~iss~CtV--------F-----aeSevi~~~~~--G~-- 184 (262)
T TIGR02261 122 AYKMTSQCASGSGQFLENIARYLGIAQDEIGSLSQQADNPEKVSGICAV--------L-----AETDVINMVSR--GI-- 184 (262)
T ss_pred eEEecCcccccccHHHHHHHHHhCCCHHHHHHHHhcCCCCCCcCCCceE--------E-----chhhHHHHHHC--CC--
Confidence 3555577764 58999888865444422222 2333444455443331 0 01123333332 22
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHH
Q 023317 173 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVK 244 (284)
Q Consensus 173 ~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~ 244 (284)
+.+ .++.-+|++|.+|.+.++ ++.+.. .-.|.+.|.+.+ ++.+.+.+++.+.
T Consensus 185 -~~e--dI~aGl~~sia~r~~~~~--------~~~~~~--------~~~v~~~GGva~-n~~~~~~le~~l~ 236 (262)
T TIGR02261 185 -SAP--NILKGIHESMADRLAKLL--------KSLGAL--------DGTVLCTGGLAL-DAGLLEALKDAIQ 236 (262)
T ss_pred -CHH--HHHHHHHHHHHHHHHHHH--------hccCCC--------CCcEEEECcccc-cHHHHHHHHHHhc
Confidence 233 468889999999865543 344321 225888999654 4788777777653
No 51
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=36.43 E-value=60 Score=30.70 Aligned_cols=52 Identities=25% Similarity=0.327 Sum_probs=37.0
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEE----cCCchHHHHHHHHHHh
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEH----SNDGSGIGAALLAASH 275 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~----~~dgSg~GAAl~aA~~ 275 (284)
.|-+.|.. ...|+|.++++..|..+.++.. ++++.. ....+-+||++.|...
T Consensus 313 nIvl~GG~-S~i~G~~eRL~~eL~~~~~~~~--~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 313 NIVLTGGS-SLIPGFKERLQQELRSLLPSST--KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TEEEESGG-GGSTTHHHHHHHHHHHHSGTTS--TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ceEEeccc-ccccchHHHHHHHhhhhhhccc--cceeccCchhhhhcccccceeeeccc
Confidence 34555654 4569999999999999876543 455554 4467899999998665
No 52
>PLN02295 glycerol kinase
Probab=33.41 E-value=2e+02 Score=28.67 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=35.3
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
.|-+.|.. .++|.+.+++-+ +++ .+|.....++++.+|||++|+++.-
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~AD----v~g----~pV~~~~~~e~~alGaA~~A~~~~G 462 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQAD----LLG----SPVVRPADIETTALGAAYAAGLAVG 462 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHH----hcC----CceEecCccccHHHHHHHHHHhhcC
Confidence 46677775 466777777665 444 4677767789999999999988763
No 53
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=31.87 E-value=3.2e+02 Score=25.03 Aligned_cols=48 Identities=13% Similarity=0.140 Sum_probs=40.4
Q ss_pred cceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHH
Q 023317 218 QKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAA 269 (284)
Q Consensus 218 ~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAA 269 (284)
..+.++..=|.+.-.+.=++++.+.+.+.+|. +|++...-|-|.+|.-
T Consensus 198 ~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~g~----~V~l~~~VDpsLIGGi 245 (271)
T PRK13430 198 RGRSVATVTTAVPLSDEQKQRLAAALSRIYGR----PVHLNSEVDPSVLGGM 245 (271)
T ss_pred cCeeEEEEEecCCCCHHHHHHHHHHHHHHHCC----ceEEEeeECccccCcE
Confidence 35677777788999999999999999998874 7888888999999874
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=30.86 E-value=1.8e+02 Score=28.63 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=58.1
Q ss_pred ceeeeeec--cccchHHHHHHHHHHHHHhcCC-CCCC-CCCCCCCCCccChhhhhhhccCCCcChHHHHHHhhhhccCCC
Q 023317 97 EQIFEKII--SGMYLGEIVRRVLCRMAEEANF-FGDT-VPPKLKIPFILRTPHMSAMHHDTSPDLRVVGKKLKDILEISN 172 (284)
Q Consensus 97 ~q~~EKmv--sG~YLGEl~R~il~~~~~~~~l-f~~~-~~~~l~~~~~~~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~ 172 (284)
+++=+|.. +|+||-.+.|+.=+++-+=+.+ +.+. -|..+...... .....+...+. .|.
T Consensus 266 F~MNdkCAAGTGrFLE~~A~~Lgi~ieEl~~lA~~~~~~pv~IsS~CtV-------------FaeSevIsll~--~G~-- 328 (404)
T TIGR03286 266 FTMGGICAGASGRFLEMTAKRLGVDITELGKLALKGMPEKVRMNSYCIV-------------FGIQDLVTALA--EGA-- 328 (404)
T ss_pred EEEcCcccccCcHHHHHHHHHhCCCHHHHHHHHHhCCCCCCCccCcccc-------------cccHhHHHHHH--CCC--
Confidence 56668888 8999999998864444322222 2332 24444433321 01122333333 233
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHH
Q 023317 173 TSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQST 242 (284)
Q Consensus 173 ~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~ 242 (284)
+.+ .++.-+|++|.+|.+. .++++.+. +-.|.+.|++ .+.+.+.+.+++.
T Consensus 329 -~~e--DIaAGl~~SIa~rv~~-------~l~~~~~i---------~~~VvftGGv-a~N~gvv~ale~~ 378 (404)
T TIGR03286 329 -SPE--DVAAAACHSVAEQVYE-------QQLQEIDV---------REPVILVGGT-SLIEGLVKALGDL 378 (404)
T ss_pred -CHH--HHHHHHHHHHHHHHHH-------HHhhcCCC---------CCcEEEECCh-hhhHHHHHHHHHH
Confidence 334 4688899999998764 22233322 2258888886 3335555555443
No 55
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=29.78 E-value=70 Score=26.48 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.1
Q ss_pred EEEEEechHHHHhccccC----CCCceEEEEecccccceeecc
Q 023317 10 VAALVNDTIGTLAGGRYH----NKDAIAAVILGTGTNAAYVER 48 (284)
Q Consensus 10 v~AivNDTVaTlla~~y~----~~~~~iGlIlGTGtNacY~e~ 48 (284)
.+.+.||..+..++-.+. +.+..+-+-+|||.-++++.+
T Consensus 94 pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~GiG~~ii~~ 136 (179)
T PF00480_consen 94 PVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGIGAGIIIN 136 (179)
T ss_dssp EEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSEEEEEEET
T ss_pred EEEEecCCCcceeehhhcCccCCcceEEEEEeecCCCcceecc
Confidence 456999999877665542 346778888999999999864
No 56
>CHL00119 atpD ATP synthase CF1 delta subunit; Validated
Probab=28.83 E-value=3.6e+02 Score=22.88 Aligned_cols=110 Identities=14% Similarity=0.034 Sum_probs=63.2
Q ss_pred hhhhhccCCCcChHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEE
Q 023317 145 HMSAMHHDTSPDLRVVGKKLKDILEISNTSLKMRKLVVELCDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIAL 224 (284)
Q Consensus 145 ~ls~i~~d~~~~~~~~~~il~~~~~~~~~t~~d~~~vr~i~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~Vgv 224 (284)
.+..+..++.-..+.=.+++...++- ..+. .....+.-.+-++--.+....+.+......+. ..+..+.
T Consensus 45 ~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~---~~~nfl~~L~~~~r~~~l~~I~~~f~~~~~~~-------~~~~~~~ 113 (184)
T CHL00119 45 ELKKFLANPLISKNAKKEVIKKTFGS-QINE---NTLKFLMVLVDRGRIALLDAIIEKYLELVYKL-------ASIKIAE 113 (184)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHh-ccCH---HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh-------cCeEEEE
Confidence 44445555554544444555554331 1122 22233333443344444444444444444332 3577888
Q ss_pred ecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHH
Q 023317 225 DGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGA 268 (284)
Q Consensus 225 dGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GA 268 (284)
--|.+.-.+.-.+.+.+.+...+|. .++.+...-|-+.+|.
T Consensus 114 v~sa~~L~~~~~~~l~~~L~~~~~~---~~v~l~~~vD~~ligG 154 (184)
T CHL00119 114 VSTAVPLSSAQEEALIEKLKEMTNA---KEIKLVITVDPSLIGG 154 (184)
T ss_pred EEeccCCCHHHHHHHHHHHHHHhCC---CeEEEEeeeChHHhCc
Confidence 8899999999999999999887763 3576776667777765
No 57
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=26.77 E-value=3.1e+02 Score=26.72 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=30.8
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
+|-+.|.. -+.+.+.+++-+ +++ ++|... .++++.+|||++|+++.-
T Consensus 390 ~i~~~GGg-a~s~~w~Qi~AD----vlg----~pV~~~-~~e~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 390 QLHIVGGG-SQNAFLNQLCAD----ACG----IRVIAG-PVEASTLGNIGVQLMALD 436 (454)
T ss_pred EEEEECCh-hhhHHHHHHHHH----HhC----CceEcC-CchHHHHHHHHHHHHhcC
Confidence 45566665 355666655554 454 356533 367899999999998764
No 58
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=26.59 E-value=3.2e+02 Score=26.98 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=29.9
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhc
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHS 276 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~ 276 (284)
.|-+.|.. -+.+.+.+++.+ +++ .+|.... .+++.+|||++|+++.
T Consensus 378 ~i~~~GGg-a~s~~w~Qi~AD----vlg----~pV~~~~-~ea~alGaa~~a~~a~ 423 (471)
T PRK10640 378 QLHIVGGG-CQNALLNQLCAD----ACG----IRVIAGP-VEASTLGNIGIQLMTL 423 (471)
T ss_pred eEEEECCh-hhhHHHHHHHHH----HhC----CCeeeCC-hhHHHHHHHHHHHHHc
Confidence 45566665 444666665554 444 3564433 4799999999998875
No 59
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=24.48 E-value=70 Score=32.23 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.8
Q ss_pred eccccchHHHHHHHHHHHHHhcC
Q 023317 103 IISGMYLGEIVRRVLCRMAEEAN 125 (284)
Q Consensus 103 mvsG~YLGEl~R~il~~~~~~~~ 125 (284)
.+.|+|++||++.++-++-+.+.
T Consensus 158 ~~~G~y~Ael~k~v~~~le~~ky 180 (496)
T cd01319 158 YINGRYLAEITKEVFSDLEESKY 180 (496)
T ss_pred CcchHhHHHHHHHHHHHHHhccc
Confidence 57899999999999999976643
No 60
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=24.40 E-value=4.8e+02 Score=26.38 Aligned_cols=50 Identities=22% Similarity=0.271 Sum_probs=37.5
Q ss_pred ceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCchHHHHHHHHHHhcc
Q 023317 219 KSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGSGIGAALLAASHSQ 277 (284)
Q Consensus 219 ~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgSg~GAAl~aA~~~~ 277 (284)
--.+-|||..-+. ..+.+...++++- +|.=....+-+-+|||.+|..+.-
T Consensus 403 ~~~LrvDGG~s~n-----~~lmQfqADilg~----~V~Rp~~~EtTAlGaA~lAGla~G 452 (499)
T COG0554 403 LTRLRVDGGASRN-----NFLMQFQADILGV----PVERPVVLETTALGAAYLAGLAVG 452 (499)
T ss_pred ceeEEEcCccccc-----hhHHHHHHHHhCC----eeeccccchhhHHHHHHHHhhhhC
Confidence 4578899999776 3455555677763 566666788999999999988765
No 61
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=24.27 E-value=4e+02 Score=26.53 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=44.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcCCch
Q 023317 185 CDIVATRGARLSAAGIVGILKKLGRDTVRDGEKQKSVIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSNDGS 264 (284)
Q Consensus 185 ~~~V~~RaA~L~aa~iaail~~~~~~~~~~~~~~~v~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~dgS 264 (284)
+++|.+=.|.-.+-.+-.+....+.. .-.|-+.|..-+. +.+.+++.+ +++ .+|......+.+
T Consensus 376 ~ravlEgva~~l~~~~~~l~~~~g~~--------~~~i~~~GGgars-~~w~Qi~Ad----~~g----~~v~~~~~~e~~ 438 (502)
T COG1070 376 ARAVLEGVAFALADGLEALEELGGKP--------PSRVRVVGGGARS-PLWLQILAD----ALG----LPVVVPEVEEAG 438 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC--------ccEEEEECCcccC-HHHHHHHHH----HcC----CeeEecCcccch
Confidence 34554433444444444444433432 2267788887666 777776665 444 467777777888
Q ss_pred HHHHHHHHHHhc
Q 023317 265 GIGAALLAASHS 276 (284)
Q Consensus 265 g~GAAl~aA~~~ 276 (284)
..|+|+.++.+.
T Consensus 439 a~g~A~~~~~~~ 450 (502)
T COG1070 439 ALGGAALAAAAL 450 (502)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 62
>PTZ00466 actin-like protein; Provisional
Probab=23.06 E-value=61 Score=31.16 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=35.4
Q ss_pred EEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcC---CchHHHHHHHHHH
Q 023317 222 IALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSN---DGSGIGAALLAAS 274 (284)
Q Consensus 222 VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~---dgSg~GAAl~aA~ 274 (284)
|-+.|..= ..|+|.+|++..|+++++.. .+|++.... ..+.+||++.|..
T Consensus 302 IvL~GG~S-l~~Gf~~RL~~EL~~l~p~~--~~v~v~~~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 302 IVLSGGTT-MFHGFGDRLLNEIRKFAPKD--ITIRISAPPERKFSTFIGGSILASL 354 (380)
T ss_pred EEEeCCcc-ccCCHHHHHHHHHHHhCCCC--ceEEEecCCCCceeEEECchhhcCc
Confidence 44444432 25899999999999998753 356665443 4689999998865
No 63
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=22.49 E-value=71 Score=29.86 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=12.8
Q ss_pred CCceEEEEecccccc
Q 023317 29 KDAIAAVILGTGTNA 43 (284)
Q Consensus 29 ~~~~iGlIlGTGtNa 43 (284)
+++.+|+|.|||...
T Consensus 2 ~~~~igIIgGSGl~~ 16 (290)
T PRK07432 2 TQAKIGIIGGSGLYK 16 (290)
T ss_pred CCCcEEEEecCccCC
Confidence 457899999999876
No 64
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=22.44 E-value=31 Score=35.19 Aligned_cols=31 Identities=42% Similarity=0.568 Sum_probs=24.8
Q ss_pred hHhHhccCCCCCc--eeeeeeccccchHHHHHHHHH
Q 023317 85 DEALDTESLNPGE--QIFEKIISGMYLGEIVRRVLC 118 (284)
Q Consensus 85 D~~lD~~S~~pg~--q~~EKmvsG~YLGEl~R~il~ 118 (284)
|.....-|.|||. +|+.|.-|| |||.|..|.
T Consensus 411 d~VeF~istNpG~~~~PL~KvASG---GELSRimLA 443 (557)
T COG0497 411 DKVEFLISTNPGEPLKPLAKVASG---GELSRIMLA 443 (557)
T ss_pred ceEEEEEeCCCCCCCccHHhhcch---hHHHHHHHH
Confidence 4444456889984 999999999 999998664
No 65
>PTZ00452 actin; Provisional
Probab=20.10 E-value=92 Score=29.81 Aligned_cols=51 Identities=14% Similarity=0.255 Sum_probs=36.2
Q ss_pred EEEEecccceechhHHHHHHHHHHHHhCCCCcccEEEEEcC---CchHHHHHHHHHH
Q 023317 221 VIALDGGLFEHYTKFSACMQSTVKELLGEEVSETVVIEHSN---DGSGIGAALLAAS 274 (284)
Q Consensus 221 ~VgvdGS~~~~~p~f~~~~~~~l~~l~~~~~~~~v~l~~~~---dgSg~GAAl~aA~ 274 (284)
+|-+.|+. ..+|+|.+|++..|++++++. .++++.... .++.+||++.|..
T Consensus 296 nIvL~GG~-Sl~~Gf~~RL~~El~~~~p~~--~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 296 NIVLSGGT-TLFPGIANRLSNELTNLVPSQ--LKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred cEEEeccc-ccccCHHHHHHHHHHHhCCCC--ceeEEecCCCcceeEEECchhhcCc
Confidence 34444543 345899999999999998753 356665433 4789999998865
No 66
>PLN02544 phosphoribosylaminoimidazole-succinocarboxamide synthase
Probab=20.04 E-value=3.1e+02 Score=26.61 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=54.9
Q ss_pred eeeeeeccccchHHHHHHHHHHHHHhc-CCCCCCCCCCCCCCCccChhhhhhh----ccCCCcChHHHHHHhhhhccCCC
Q 023317 98 QIFEKIISGMYLGEIVRRVLCRMAEEA-NFFGDTVPPKLKIPFILRTPHMSAM----HHDTSPDLRVVGKKLKDILEISN 172 (284)
Q Consensus 98 q~~EKmvsG~YLGEl~R~il~~~~~~~-~lf~~~~~~~l~~~~~~~t~~ls~i----~~d~~~~~~~~~~il~~~~~~~~ 172 (284)
-|+|-.+-|.--|-+++....++-+.+ .+-+-.+|+.+.....|+...+.-. +.|+.-+.+. ++. +|+
T Consensus 154 iPlEvVvR~y~tGS~~~slw~~Y~~g~~~~~Gi~lpeGl~eg~kLp~PI~tpstK~d~hD~~Is~~~---i~~--~g~-- 226 (370)
T PLN02544 154 FPVEFVVRGYMTGSTSTSLWTVYNKGVRNYCGNDLPDGMVKNQKLPANILTPTTKAADHDVPISPEE---IVE--EGL-- 226 (370)
T ss_pred eeEEEEEEeeeeccchHHHHHHHhccCcccccccCCCCccccCCCCCCeEEEeeccccCCCCCCHHH---HHH--hcC--
Confidence 467777888777998888888886632 2322234444443333332222111 2444333333 222 444
Q ss_pred CCHHHHHHHHHHHHHHHHHhhHHHH
Q 023317 173 TSLKMRKLVVELCDIVATRGARLSA 197 (284)
Q Consensus 173 ~t~~d~~~vr~i~~~V~~RaA~L~a 197 (284)
.+.++...++.++..|.++...+.+
T Consensus 227 ~~~ee~~~i~~~alki~~~l~~~~~ 251 (370)
T PLN02544 227 MTQEDFDEVSSKALALFAFGQEVAA 251 (370)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998777654
Done!