Your job contains 1 sequence.
>023320
MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKP
GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKK
RKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATD
SGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP
VAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMRKL
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023320
(284 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091526 - symbol:AT3G13700 species:3702 "Arabi... 618 1.7e-78 2
TAIR|locus:2060015 - symbol:AT2G42240 species:3702 "Arabi... 378 6.5e-35 1
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 188 1.4e-30 2
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 188 1.4e-30 2
TAIR|locus:504955737 - symbol:AT3G21215 species:3702 "Ara... 175 1.4e-26 2
FB|FBgn0263995 - symbol:cpo "couch potato" species:7227 "... 168 7.0e-16 2
UNIPROTKB|Q9YGP5 - symbol:rbpms "RNA-binding protein with... 177 1.3e-13 1
ZFIN|ZDB-GENE-040426-741 - symbol:rbpms2b "RNA binding pr... 176 1.6e-13 1
ZFIN|ZDB-GENE-040718-106 - symbol:rbpms2a "RNA binding pr... 176 1.6e-13 1
UNIPROTKB|F1NZ89 - symbol:RBPMS2 "Uncharacterized protein... 172 4.4e-13 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 172 4.4e-13 1
UNIPROTKB|Q9W6I1 - symbol:RBPMS "RNA-binding protein with... 172 4.4e-13 1
UNIPROTKB|F1MAV3 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|E2R5F7 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
UNIPROTKB|B4E3T4 - symbol:RBPMS "HCG2043421, isoform CRA_... 171 5.6e-13 1
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 171 5.6e-13 1
UNIPROTKB|Q93062 - symbol:RBPMS "RNA-binding protein with... 171 5.6e-13 1
UNIPROTKB|F1RX64 - symbol:RBPMS "Uncharacterized protein"... 171 5.6e-13 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 171 5.6e-13 1
UNIPROTKB|F1N2U8 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
UNIPROTKB|Q6ZRY4 - symbol:RBPMS2 "RNA-binding protein wit... 169 9.1e-13 1
UNIPROTKB|F1S0B2 - symbol:RBPMS2 "Uncharacterized protein... 169 9.1e-13 1
MGI|MGI:1919223 - symbol:Rbpms2 "RNA binding protein with... 169 9.1e-13 1
RGD|1561222 - symbol:Rbpms2 "RNA binding protein with mul... 169 9.1e-13 1
UNIPROTKB|F1NAP9 - symbol:RBPMS "RNA-binding protein with... 166 1.9e-12 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 166 1.9e-12 1
UNIPROTKB|F1M7J8 - symbol:Rbpms "Protein Rbpms" species:1... 166 1.9e-12 1
UNIPROTKB|F1M9Y9 - symbol:Rbpms "Protein Rbpms" species:1... 166 1.9e-12 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 158 1.7e-11 1
POMBASE|SPCC320.07c - symbol:mde7 "RNA-binding protein Md... 139 3.0e-10 3
POMBASE|SPCC16C4.07 - symbol:scw1 "RNA-binding protein Sc... 158 5.9e-09 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 120 1.9e-07 2
SGD|S000002383 - symbol:WHI4 "Putative RNA binding protei... 129 4.1e-07 2
UNIPROTKB|G5EH29 - symbol:MGCH7_ch7g848 "RNA binding prot... 142 5.5e-07 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 104 2.3e-06 2
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 122 2.0e-05 1
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 127 3.0e-05 1
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 116 9.4e-05 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 109 0.00016 2
CGD|CAL0002334 - symbol:WHI3 species:5476 "Candida albica... 97 0.00016 3
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 109 0.00018 2
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 109 0.00018 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 109 0.00019 2
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 109 0.00019 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 109 0.00019 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 109 0.00019 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 109 0.00020 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 109 0.00020 2
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 109 0.00021 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 109 0.00021 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 109 0.00021 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 109 0.00021 2
SGD|S000005141 - symbol:WHI3 "RNA binding protein that se... 118 0.00022 2
POMBASE|SPBC660.11 - symbol:tcg1 "single-stranded telomer... 115 0.00028 1
>TAIR|locus:2091526 [details] [associations]
symbol:AT3G13700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001307 UniGene:At.39361
OMA:APSANGH IPI:IPI00523019 RefSeq:NP_187983.1
ProteinModelPortal:B3H4P0 SMR:B3H4P0 PRIDE:B3H4P0
EnsemblPlants:AT3G13700.1 GeneID:820579 KEGG:ath:AT3G13700
TAIR:At3g13700 eggNOG:NOG298185 HOGENOM:HOG000242657
PhylomeDB:B3H4P0 ProtClustDB:CLSN2684800 ArrayExpress:B3H4P0
Genevestigator:B3H4P0 Uniprot:B3H4P0
Length = 296
Score = 618 (222.6 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 127/202 (62%), Positives = 151/202 (74%)
Query: 76 VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRT 135
VVAFATF +H+ A+AA++ELNGVKFDPQ+GS LHIELARSNSR+K +PGSG YVVID R
Sbjct: 95 VVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKERPGSGPYVVIDNRN 154
Query: 136 KTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYE 195
K + Q+ S +GDSD DE N DS + D ++++ DS A + EK E
Sbjct: 155 KEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSKAPSANGHLEKASE 214
Query: 196 GG--VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQAS 253
GG + CSTLFIANLGPNCTEDELKQ LS YPGF++LK+RARGGMPVAFADFEE+EQA+
Sbjct: 215 GGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQAT 274
Query: 254 IAMEGLQDSTLPSSDRGGMHIE 275
AM LQ + L SSDRGGMHIE
Sbjct: 275 DAMNHLQGNLLSSSDRGGMHIE 296
Score = 190 (71.9 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
Identities = 35/46 (76%), Positives = 41/46 (89%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV 76
+ INTLFVSGLP+DV+AREIHNLFRR+ GF+ CQLKYTGRG+QV
Sbjct: 32 EPGAINTLFVSGLPNDVKAREIHNLFRRRHGFESCQLKYTGRGDQV 77
Score = 56 (24.8 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 16/43 (37%), Positives = 18/43 (41%)
Query: 241 VAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMRK 283
VAFA F A AM L +HIE ARS R+
Sbjct: 96 VAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRR 138
>TAIR|locus:2060015 [details] [associations]
symbol:AT2G42240 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000242657 UniGene:At.73056 EMBL:AK228665
IPI:IPI00570582 RefSeq:NP_001078040.1 ProteinModelPortal:Q0WQM7
SMR:Q0WQM7 EnsemblPlants:AT2G42240.2 GeneID:818824
KEGG:ath:AT2G42240 TAIR:At2g42240 OMA:CPTLFVA PhylomeDB:Q0WQM7
ProtClustDB:CLSN2699079 Genevestigator:Q0WQM7 Uniprot:Q0WQM7
Length = 302
Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
Identities = 96/243 (39%), Positives = 135/243 (55%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFV+GLP+DV+ REI+NLFR PG++ L+ + G + AFA F + Q+AVA +H
Sbjct: 49 VRTLFVAGLPEDVKPREIYNLFREFPGYETSHLR-SSDGAKPFAFAVFSDLQSAVAVMHA 107
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTD 154
LNG+ FD + S LHI+LA+SN + KR + + K+ K+ ES +
Sbjct: 108 LNGMVFDLEKHSTLHIDLAKSNPKSKRSRTDDGWESL-KKLKSWNTTTESGFGSFQTPGM 166
Query: 155 EASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCT 214
+S I + QS+ + AP S KP + PC TLFIAN+GPNCT
Sbjct: 167 SSSAYNTIG------YSPAQSQGIANVAGR-AP-TSRKPSKAA-DPCPTLFIANMGPNCT 217
Query: 215 EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG-MH 273
E EL Q S GF LK++ G PVAF DF++V +S A+ LQ + L SS G +
Sbjct: 218 EAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSLTGEVLR 277
Query: 274 IEY 276
++Y
Sbjct: 278 LQY 280
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 188 (71.2 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 248
+S++ + CSTLF+ANL ED L+ + GF L++ + G VAF ++ +
Sbjct: 215 HSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSD 274
Query: 249 VEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281
+++A+ AM LQ + ++DRGG+ IEYAR+KM
Sbjct: 275 LQKATQAMISLQGFQITANDRGGLRIEYARNKM 307
Score = 178 (67.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T G+ V F TF++ Q A A
Sbjct: 30 VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDA 89
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKR 121
L GV+FDP+ VL +ELA+SN++ R
Sbjct: 90 RKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 188 (71.2 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 35/93 (37%), Positives = 57/93 (61%)
Query: 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 248
+S++ + CSTLF+ANL ED L+ + GF L++ + G VAF ++ +
Sbjct: 215 HSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRLHNKNGSCVAFVEYSD 274
Query: 249 VEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281
+++A+ AM LQ + ++DRGG+ IEYAR+KM
Sbjct: 275 LQKATQAMISLQGFQITANDRGGLRIEYARNKM 307
Score = 178 (67.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T G+ V F TF++ Q A A
Sbjct: 30 VRTLFVSGLPMDAKPRELYLLFRGCRGYEGALLKMTSKNGKPTSPVGFVTFLSQQDAQDA 89
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKR 121
L GV+FDP+ VL +ELA+SN++ R
Sbjct: 90 RKMLQGVRFDPECAQVLRLELAKSNTKVAR 119
>TAIR|locus:504955737 [details] [associations]
symbol:AT3G21215 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09012 eggNOG:NOG255497
HOGENOM:HOG000242657 EMBL:AF361632 EMBL:AY143892 EMBL:AK118175
EMBL:AK226266 EMBL:AK317062 IPI:IPI00534607 RefSeq:NP_683582.2
UniGene:At.27825 ProteinModelPortal:Q9ASW4 SMR:Q9ASW4 IntAct:Q9ASW4
PaxDb:Q9ASW4 PRIDE:Q9ASW4 EnsemblPlants:AT3G21215.1 GeneID:821675
KEGG:ath:AT3G21215 TAIR:At3g21215 InParanoid:Q9ASW4 OMA:EASQVNF
PhylomeDB:Q9ASW4 ProtClustDB:CLSN2680031 Genevestigator:Q9ASW4
Uniprot:Q9ASW4
Length = 339
Score = 175 (66.7 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
PC+TLFI NLG N E+EL+ LS PGF +K+ + V F +FE+V A+ L
Sbjct: 231 PCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFEDVNSATNVHHNL 290
Query: 260 QDSTLPSSDRGGMHIEYARSKMRK 283
Q + +PSS GM I+Y+++ K
Sbjct: 291 QGAVIPSSGSIGMRIQYSKNPYGK 314
Score = 173 (66.0 bits), Expect = 1.4e-26, Sum P(2) = 1.4e-26
Identities = 44/112 (39%), Positives = 65/112 (58%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ T+F++GLPDDV+ RE+ NL R PG++ Q+ + +G + + FA F Q A+AA
Sbjct: 58 LRTIFIAGLPDDVKERELLNLLRWLPGYEASQVNF--KGEKPMGFALFSTAQFAMAAKDT 115
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKRK-PG-SGAYVVIDKRTKTEANVQES 144
L + FD +S SV+H E+A+ N KR G S AY KR +T + S
Sbjct: 116 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQ-SKRLRTGGDCTHS 166
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 32/98 (32%), Positives = 49/98 (50%)
Query: 31 QDNG-INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAV 89
+DN NTLF+ L +++ E+ +L +PGF Q+K + V F F + +A
Sbjct: 227 KDNPPCNTLFIGNLGENINEEELRSLLSAQPGFK--QMKILRQERHTVCFIEFEDVNSAT 284
Query: 90 AALHELNGVKFDPQSGSV-LHIELARSNSRKKRKPGSG 126
H L G P SGS+ + I+ ++ N KRK G G
Sbjct: 285 NVHHNLQGAVI-PSSGSIGMRIQYSK-NPYGKRKEGGG 320
>FB|FBgn0263995 [details] [associations]
symbol:cpo "couch potato" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS;IDA] [GO:0007422 "peripheral nervous system
development" evidence=NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0009987 "cellular process" evidence=IMP] [GO:0007268 "synaptic
transmission" evidence=IMP] [GO:0042048 "olfactory behavior"
evidence=IMP] [GO:0022611 "dormancy process" evidence=IMP]
[GO:0035206 "regulation of hemocyte proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007275 GO:GO:0005634
GO:GO:0000166 GO:GO:0007268 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0042048 GO:GO:0035206 CTD:130749 EMBL:Z14311 EMBL:Z14312
EMBL:Z14974 EMBL:AY129455 EMBL:BT001569 PIR:A46230 PIR:S24761
RefSeq:NP_001014631.2 RefSeq:NP_001014632.2 RefSeq:NP_001163640.1
RefSeq:NP_001163641.1 RefSeq:NP_524844.5 RefSeq:NP_732282.5
RefSeq:NP_732283.4 RefSeq:NP_732284.4 UniGene:Dm.6154
ProteinModelPortal:Q01617 SMR:Q01617 IntAct:Q01617 MINT:MINT-335471
STRING:Q01617 PaxDb:Q01617 GeneID:45840 GeneID:8674070
KEGG:dme:Dmel_CG31243 KEGG:dme:Dmel_CG42457 FlyBase:FBgn0000363
eggNOG:NOG255204 InParanoid:Q01617 OrthoDB:EOG4H44N8 ChiTaRS:CPO
NextBio:838394 Bgee:Q01617 GermOnline:CG31243 GO:GO:0022611
Uniprot:Q01617
Length = 738
Score = 168 (64.2 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 38/93 (40%), Positives = 53/93 (56%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T + + V F TF A AA
Sbjct: 450 VRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAA 509
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSR-KKRKP 123
+L GV+FDP + +E A+SN++ K KP
Sbjct: 510 KQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKP 542
Score = 94 (38.1 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 178 ATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM 233
A + NA P N P PCSTLF+ANLG +E ELK+ S + N LK+
Sbjct: 683 AGSTNNASHPGN---PQIAANAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKL 735
Score = 36 (17.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 220 QTLSVYPGFNMLKMRARGGMPVA 242
QT +++PG M M A A
Sbjct: 620 QTTAIHPGAAMAHMAAAAAAAAA 642
>UNIPROTKB|Q9YGP5 [details] [associations]
symbol:rbpms "RNA-binding protein with multiple splicing"
species:8355 "Xenopus laevis" [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=ISS]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOVERGEN:HBG069897 CTD:11030 EMBL:AF107889
EMBL:BC097507 RefSeq:NP_001081864.1 UniGene:Xl.449
ProteinModelPortal:Q9YGP5 GeneID:398092 KEGG:xla:398092
Uniprot:Q9YGP5
Length = 196
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF N A AA +
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTK 100
>ZFIN|ZDB-GENE-040426-741 [details] [associations]
symbol:rbpms2b "RNA binding protein with multiple
splicing 2b" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-741 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
GeneTree:ENSGT00500000044861 EMBL:BX663612 EMBL:CR354581
EMBL:BC048876 EMBL:BC066414 EMBL:AB080736 IPI:IPI00498043
RefSeq:NP_956553.1 UniGene:Dr.81683 STRING:Q7ZUL7
Ensembl:ENSDART00000006619 GeneID:393229 KEGG:dre:393229 CTD:393229
OMA:TDIKPRE NextBio:20814293 Uniprot:Q7ZUL7
Length = 200
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPTDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNGV+FDP++ L +E A++N++
Sbjct: 77 LNGVRFDPENPQTLRLEFAKANTK 100
>ZFIN|ZDB-GENE-040718-106 [details] [associations]
symbol:rbpms2a "RNA binding protein with multiple
splicing 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040718-106 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:BX296538
EMBL:CU570688 EMBL:BC076171 EMBL:BC152178 IPI:IPI00486507
RefSeq:NP_001002409.1 UniGene:Dr.82744 STRING:Q6DH13
Ensembl:ENSDART00000067514 GeneID:436682 KEGG:dre:436682 CTD:436682
InParanoid:Q6DH13 NextBio:20831125 Uniprot:Q6DH13
Length = 199
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRSGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+S L +E A++N++
Sbjct: 77 LNGIRFDPESPQTLRLEFAKANTK 100
>UNIPROTKB|F1NZ89 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 EMBL:AADN02051088 IPI:IPI00819063
Ensembl:ENSGALT00000003715 Uniprot:F1NZ89
Length = 180
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTK 82
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 19 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTK 100
>UNIPROTKB|Q9W6I1 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISS] [GO:0010862 "positive
regulation of pathway-restricted SMAD protein phosphorylation"
evidence=ISS] [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
eggNOG:NOG255204 GO:GO:0008143 EMBL:AF129933 IPI:IPI00591826
RefSeq:NP_990200.1 UniGene:Gga.2695 ProteinModelPortal:Q9W6I1
GeneID:395678 KEGG:gga:395678 CTD:348093 HOGENOM:HOG000017369
HOVERGEN:HBG069897 InParanoid:Q9W6I1 OrthoDB:EOG42RD8G
NextBio:20815750 Uniprot:Q9W6I1
Length = 200
Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 35/84 (41%), Positives = 55/84 (65%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 21 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 78
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 79 LNGIRFDPENPQTLRLEFAKANTK 102
>UNIPROTKB|F1MAV3 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:DAAA02060452 IPI:IPI00722097
UniGene:Bt.106824 Ensembl:ENSBTAT00000047899 Uniprot:F1MAV3
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|E2R5F7 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0060391 "positive regulation of SMAD protein
import into nucleus" evidence=IEA] [GO:0010862 "positive regulation
of pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 CTD:11030 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AAEX03010423 EMBL:AAEX03010424
RefSeq:XP_532815.3 ProteinModelPortal:E2R5F7 PRIDE:E2R5F7
Ensembl:ENSCAFT00000010500 GeneID:475599 KEGG:cfa:475599
NextBio:20851407 Uniprot:E2R5F7
Length = 219
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|B4E3T4 [details] [associations]
symbol:RBPMS "HCG2043421, isoform CRA_c" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000017369 HOVERGEN:HBG069897 UniGene:Hs.334587
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 EMBL:AK304858 IPI:IPI00908913 SMR:B4E3T4
STRING:B4E3T4 Ensembl:ENST00000517860 UCSC:uc011lba.1
Uniprot:B4E3T4
Length = 224
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|Q93062 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IDA]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IDA] [GO:0008143 "poly(A) RNA binding"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
EMBL:CH471080 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0006396 GO:GO:0003713 GO:GO:0010862 GO:GO:0060391
GO:GO:0008143 HOGENOM:HOG000017369 HOVERGEN:HBG069897 EMBL:D84110
EMBL:D84107 EMBL:D84108 EMBL:D84109 EMBL:D84111 EMBL:BC003608
IPI:IPI00004045 IPI:IPI00101800 IPI:IPI00216935 IPI:IPI00216936
IPI:IPI00414709 PIR:JC6127 RefSeq:NP_001008710.1
RefSeq:NP_001008711.1 RefSeq:NP_001008712.1 RefSeq:NP_006858.1
UniGene:Hs.334587 PDB:1BNY PDBsum:1BNY ProteinModelPortal:Q93062
SMR:Q93062 IntAct:Q93062 MINT:MINT-1434067 STRING:Q93062
DMDM:13124469 PaxDb:Q93062 PRIDE:Q93062 Ensembl:ENST00000287771
Ensembl:ENST00000320203 Ensembl:ENST00000339877
Ensembl:ENST00000397323 GeneID:11030 KEGG:hsa:11030 UCSC:uc003xib.3
UCSC:uc003xic.1 UCSC:uc003xid.1 CTD:11030 GeneCards:GC08P030242
HGNC:HGNC:19097 MIM:601558 neXtProt:NX_Q93062 PharmGKB:PA134985584
eggNOG:NOG292253 OMA:PEVWGPY OrthoDB:EOG4NGGNV ChiTaRS:RBPMS
GenomeRNAi:11030 NextBio:41912 ArrayExpress:Q93062 Bgee:Q93062
CleanEx:HS_RBPMS Genevestigator:Q93062 GermOnline:ENSG00000157110
Uniprot:Q93062
Length = 196
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F1RX64 [details] [associations]
symbol:RBPMS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060391 "positive regulation of SMAD protein import
into nucleus" evidence=IEA] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:CU914373 EMBL:FP236445
Ensembl:ENSSSCT00000017254 Uniprot:F1RX64
Length = 215
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A A
Sbjct: 19 QEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEA 76
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSR 118
A + LNG++FDP+ L +E A++N++
Sbjct: 77 AKNALNGIRFDPEIPQTLRLEFAKANTK 104
>UNIPROTKB|F1N2U8 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:DAAA02028733 IPI:IPI00688079
Ensembl:ENSBTAT00000014659 Uniprot:F1N2U8
Length = 203
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 24 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 81
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTK 105
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 34 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 91
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 92 LNGIRFDPENPQTLRLEFAKANTK 115
>UNIPROTKB|Q6ZRY4 [details] [associations]
symbol:RBPMS2 "RNA-binding protein with multiple splicing
2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:NOG255204 CTD:348093 HOGENOM:HOG000017369 HOVERGEN:HBG069897
OrthoDB:EOG42RD8G EMBL:AY369207 EMBL:AK127873 IPI:IPI00238688
RefSeq:NP_919248.1 UniGene:Hs.436518 HSSP:P09012
ProteinModelPortal:Q6ZRY4 SMR:Q6ZRY4 STRING:Q6ZRY4
PhosphoSite:Q6ZRY4 DMDM:74762401 PaxDb:Q6ZRY4 PRIDE:Q6ZRY4
DNASU:348093 Ensembl:ENST00000300069 GeneID:348093 KEGG:hsa:348093
UCSC:uc002anq.3 GeneCards:GC15M065032 HGNC:HGNC:19098
neXtProt:NX_Q6ZRY4 PharmGKB:PA134871904 InParanoid:Q6ZRY4
OMA:KLTSRQP PhylomeDB:Q6ZRY4 ChiTaRS:RBPMS2 GenomeRNAi:348093
NextBio:99336 ArrayExpress:Q6ZRY4 Bgee:Q6ZRY4 CleanEx:HS_RBPMS2
Genevestigator:Q6ZRY4 Uniprot:Q6ZRY4
Length = 209
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 30 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNA 87
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 88 LNGIRFDPENPQTLRLEFAKANTK 111
>UNIPROTKB|F1S0B2 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:KLTSRQP
GeneTree:ENSGT00500000044861 EMBL:CU633631
Ensembl:ENSSSCT00000005024 Uniprot:F1S0B2
Length = 195
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 15 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 72
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 73 LNGIRFDPENPQTLRLEFAKANTK 96
>MGI|MGI:1919223 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919223 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG255204 CTD:348093
HOGENOM:HOG000017369 HOVERGEN:HBG069897 OrthoDB:EOG42RD8G
HSSP:P09012 OMA:KLTSRQP EMBL:AK144659 EMBL:AK156633 EMBL:BC021788
IPI:IPI00121434 RefSeq:NP_082306.2 UniGene:Mm.29148
ProteinModelPortal:Q8VC52 SMR:Q8VC52 PhosphoSite:Q8VC52
PaxDb:Q8VC52 PRIDE:Q8VC52 DNASU:71973 Ensembl:ENSMUST00000055844
GeneID:71973 KEGG:mmu:71973 UCSC:uc009qdt.1
GeneTree:ENSGT00500000044861 InParanoid:Q8VC52 NextBio:335098
Bgee:Q8VC52 CleanEx:MM_RBPMS2 Genevestigator:Q8VC52 Uniprot:Q8VC52
Length = 206
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 24 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 81
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTK 105
>RGD|1561222 [details] [associations]
symbol:Rbpms2 "RNA binding protein with multiple splicing 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1561222 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:KLTSRQP GeneTree:ENSGT00500000044861
IPI:IPI00766399 Ensembl:ENSRNOT00000021337 UCSC:RGD:1561222
ArrayExpress:F1M9N3 Uniprot:F1M9N3
Length = 181
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/84 (41%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 1 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP++ L +E A++N++
Sbjct: 59 LNGIRFDPENPQTLRLEFAKANTK 82
>UNIPROTKB|F1NAP9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713 GO:GO:0010862
GO:GO:0060391 GO:GO:0008143 OMA:PEVWGPY
GeneTree:ENSGT00500000044861 EMBL:AADN02016141 IPI:IPI00588016
Ensembl:ENSGALT00000016744 Uniprot:F1NAP9
Length = 196
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 23 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 80
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 81 LNGIRFDPEIPQTLRLEFAKANTK 104
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|F1M7J8 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00767399
Ensembl:ENSRNOT00000046138 ArrayExpress:F1M7J8 Uniprot:F1M7J8
Length = 175
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|F1M9Y9 [details] [associations]
symbol:Rbpms "Protein Rbpms" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0010862
"positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=IEA] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1561067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143
GeneTree:ENSGT00500000044861 IPI:IPI00364663
Ensembl:ENSRNOT00000017883 ArrayExpress:F1M9Y9 Uniprot:F1M9Y9
Length = 198
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 34/84 (40%), Positives = 54/84 (64%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA +
Sbjct: 1 VRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNA 58
Query: 95 LNGVKFDPQSGSVLHIELARSNSR 118
LNG++FDP+ L +E A++N++
Sbjct: 59 LNGIRFDPEIPQTLRLEFAKANTK 82
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 158 (60.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 33/81 (40%), Positives = 52/81 (64%)
Query: 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97
LFVSGLP D++ RE++ LFR G++ +K T + Q V F +F + A AA + LNG
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDSRSEAEAAKNALNG 59
Query: 98 VKFDPQSGSVLHIELARSNSR 118
++FDP+ L +E A++N++
Sbjct: 60 IRFDPEIPQTLRLEFAKANTK 80
>POMBASE|SPCC320.07c [details] [associations]
symbol:mde7 "RNA-binding protein Mde7" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IEP] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPCC320.07c GO:GO:0007126 GO:GO:0005737
GO:GO:0008380 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG12793
PIR:T41304 RefSeq:NP_587722.1 ProteinModelPortal:O59784
EnsemblFungi:SPCC320.07c.1 GeneID:2538704 KEGG:spo:SPCC320.07c
OrthoDB:EOG42592X NextBio:20799889 Uniprot:O59784
Length = 761
Score = 139 (54.0 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
PC+T+++ NL E +L+ S G+ L + +G P+ F +FEEV A+ AME +
Sbjct: 600 PCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKM 659
Query: 260 QDSTLPSSDRGGMHIEYARSKM 281
Q + L +GG+ + Y+++ +
Sbjct: 660 QGAALDDKIKGGIRLSYSKNPL 681
Score = 74 (31.1 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 40/157 (25%), Positives = 66/157 (42%)
Query: 40 VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK 99
V GLPDD RE+ +F G+DF +++ + + + F N A+ A + LN
Sbjct: 224 VGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVY--FRNAIAALKAKNMLNASS 281
Query: 100 FDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTD---EA 156
+ + +++ ++ R + K G I T T + + S + DS T
Sbjct: 282 TN--NFTIIQRDVVRQQENEYHK---G----IPPLT-TPSLYSQRLSNNYDSTTPGFPRF 331
Query: 157 SPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193
SP N DS D VT++S +T + S P
Sbjct: 332 SPA-NFDSVINKD-VTSESRMSTSYPAVLEAFKSFNP 366
Score = 38 (18.4 bits), Expect = 3.0e-10, Sum P(3) = 3.0e-10
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 187 PINSEKPYEGGVQP 200
P+N PYE ++P
Sbjct: 524 PLNGVAPYESELRP 537
>POMBASE|SPCC16C4.07 [details] [associations]
symbol:scw1 "RNA-binding protein Scw1" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0032955 "regulation of
barrier septum assembly" evidence=IGI] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPCC16C4.07 GO:GO:0005737 GO:GO:0032995 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032955 OrthoDB:EOG42592X PIR:T41097
RefSeq:NP_587917.1 ProteinModelPortal:O74452 STRING:O74452
EnsemblFungi:SPCC16C4.07.1 GeneID:2539358 KEGG:spo:SPCC16C4.07
eggNOG:NOG255497 NextBio:20800523 Uniprot:O74452
Length = 561
Score = 158 (60.7 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 32/98 (32%), Positives = 56/98 (57%)
Query: 184 AVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAF 243
A P N+ P + PC+T+++ NL P+ +E+ELK S G+ L R +G P+ F
Sbjct: 410 ASTPTNTN-PADQN-PPCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCF 467
Query: 244 ADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281
+FE + A A++ LQ L SS +GG+ + ++++ +
Sbjct: 468 VEFENIPYAMEALKNLQGVCLSSSIKGGIRLSFSKNPL 505
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 120 (47.3 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 34/110 (30%), Positives = 57/110 (51%)
Query: 172 TTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML 231
T+ S G+A+ P +S G+ PCSTLF++NL + TE EL GF +
Sbjct: 245 TSLSSSHYHGGSALPPQSSISTT--GM-PCSTLFVSNLPKDVTERELSILFRFMRGFVGI 301
Query: 232 KM-RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD-RGGMHIEYARS 279
++ G +P+ F DF + + + A+E LQ + +SD + IE+ ++
Sbjct: 302 RLINKEGKLPMCFCDFIDTQSSMFALEFLQGFRMDASDISSSISIEFDKA 351
Score = 113 (44.8 bits), Expect = 0.00049, P = 0.00049
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
+TLFVS LP DV RE+ LFR GF +L G + F F++ Q+++ AL L
Sbjct: 272 STLFVSNLPKDVTERELSILFRFMRGFVGIRL-INKEGKLPMCFCDFIDTQSSMFALEFL 330
Query: 96 NGVKFDPQS-GSVLHIELARSNSRKK 120
G + D S + IE ++N + +
Sbjct: 331 QGFRMDASDISSSISIEFDKANHKSR 356
Score = 62 (26.9 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 32/157 (20%), Positives = 58/157 (36%)
Query: 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97
LFV +P V NLF+ PG+ + K AF F + + A A+ + G
Sbjct: 12 LFVKDIPQRVSYDAFENLFKSLPGYLMMRRK------PHFAFVEFKDREFATMAMIKFTG 65
Query: 98 VKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADG---DSDTD 154
K S + + S+S + + + +N + G D +
Sbjct: 66 YKIRDNRDSYSYNNSSSSSSSYHHNDSYNSSSGSSRHHHSHSNGGDRGRDRGYSKDYNNS 125
Query: 155 EASPVRNIDSADKGDFVTTQ-SERATDSGNAVAPINS 190
+S R + D+ D + +R + S ++ P +S
Sbjct: 126 SSSSNRRKEMDDEDDLKSIDYKDRTSKSSSSSPPYSS 162
>SGD|S000002383 [details] [associations]
symbol:WHI4 "Putative RNA binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008361 "regulation of cell size"
evidence=IGI] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000002383 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006938 GO:GO:0008361
GO:GO:0003723 OrthoDB:EOG42592X HSSP:P09012 eggNOG:NOG255497
GeneTree:ENSGT00530000067542 HOGENOM:HOG000074699 EMBL:Z74272
PIR:S67787 RefSeq:NP_010057.1 ProteinModelPortal:Q07655 SMR:Q07655
DIP:DIP-4321N IntAct:Q07655 MINT:MINT-531190 STRING:Q07655
PaxDb:Q07655 PeptideAtlas:Q07655 EnsemblFungi:YDL224C GeneID:851302
KEGG:sce:YDL224C CYGD:YDL224c NextBio:968310 Genevestigator:Q07655
GermOnline:YDL224C Uniprot:Q07655
Length = 649
Score = 129 (50.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 33/97 (34%), Positives = 54/97 (55%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNML----KMRARG-GM-----PVAFADFEEV 249
PC+TL++ NL P+ TE EL+Q S GF L KM + G G P+ F +FE+V
Sbjct: 531 PCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDV 590
Query: 250 EQASIAMEGLQDSTLPS-----SDRGGMHIEYARSKM 281
A+ A+ L S LP +++GG+ + ++++ +
Sbjct: 591 SFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPL 627
Score = 56 (24.8 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 30/125 (24%), Positives = 45/125 (36%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR----GNQVVAFATFVNHQT 87
D G L + LP D+ RE + +F G +LK R N+ V F +
Sbjct: 97 DVGPYCLLLRNLPKDITLRECYCIFSLATGVSSIELKRDDREPFNDNEKVVVVKFGSLSL 156
Query: 88 AVAALHELNGVK--FDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESS 145
+ LN F P HI++ N + + +V + N Q SS
Sbjct: 157 VTHYANILNSKSEIFGPSFPFRSHIDVV--NEQTQLPVSFQEHVSSGTTNSSPKNYQLSS 214
Query: 146 SADGD 150
SA +
Sbjct: 215 SAQNE 219
Score = 37 (18.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 157 SPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPY 194
S V N + ++ F+ ERA S + P++ E Y
Sbjct: 2 SLVHNQTNLNESKFLI---ERAFSSSSETVPLSKEATY 36
>UNIPROTKB|G5EH29 [details] [associations]
symbol:MGCH7_ch7g848 "RNA binding protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM000230 EMBL:CM001237 RefSeq:XP_003720628.1
ProteinModelPortal:G5EH29 EnsemblFungi:MGG_03053T0 GeneID:2682606
KEGG:mgr:MGG_03053 Uniprot:G5EH29
Length = 622
Score = 142 (55.0 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 31/100 (31%), Positives = 57/100 (57%)
Query: 182 GNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV 241
G++ P+N P + PC+TL++ NL + +E+ELK T S G+ L R + P+
Sbjct: 402 GHSFPPVN---PADQN-PPCNTLYVGNLPIDTSEEELKATFSKQRGYKRLCFRTKQNGPM 457
Query: 242 AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281
F +FE+V A+ A+ L L +S +GG+ + ++++ +
Sbjct: 458 CFVEFEDVSFATKALHELYGHMLHNSVKGGIRLSFSKNPL 497
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 104 (41.7 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 181 SGNAVAPINSEKPY-EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGG 238
S N P S +P + + P + LFI NL T L+ YPGF ++M A+ G
Sbjct: 136 SANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG 195
Query: 239 MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278
+AF ++E+ QASIAM+ LQ + + + M I +A+
Sbjct: 196 --IAFVEYEDDVQASIAMQPLQGFKI--TPQNPMVISFAK 231
Score = 63 (27.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 29/112 (25%), Positives = 42/112 (37%)
Query: 64 FCQLKYTGRGNQVVAFAT-------FVNHQTAVAALHELNGVKFDPQSGSVLHIELARSN 116
+C GR VVA T +V AA H + ++ P + ++ A++
Sbjct: 31 YCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMRLQYAKAK 90
Query: 117 SRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKG 168
S K G +V DK+ K E V E D P N SA+ G
Sbjct: 91 SDCLAK-AEGTFVPKDKKRKQEEKV-ERKREDSQRPNTANGPSANGPSANNG 140
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 122 (48.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 51/202 (25%), Positives = 85/202 (42%)
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
A+ F N ++A A+ ++N F + + I+ A++ S K G +V +KR +
Sbjct: 63 AWVVFDNTESASTAIAKMNNFPFYDKE---MRIQYAKTKSDVVAK-ADGTFVPREKRKRH 118
Query: 138 EANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGG 197
E D D+ + N SA G + + P E P
Sbjct: 119 EEKGGGKKKKDQHHDSTQMGMPMN--SAYPGVYGAAPPLSQVPYPGGMKPNMPEAP---- 172
Query: 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAM 256
P + LF+ NL T L+ Y GF ++M A+ G +AF +F + Q+++AM
Sbjct: 173 APPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--IAFVEFADEMQSTVAM 230
Query: 257 EGLQDSTLPSSDRGGMHIEYAR 278
+GLQ + + M I YA+
Sbjct: 231 QGLQGFKIQQNQ---MLITYAK 249
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
PC+TL++ NL P+ E+ELK S G+ L R + P+ F +FE+V A + L
Sbjct: 411 PCNTLYVGNLPPDTQEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFEDVRTAGKTLNEL 470
Query: 260 QDSTLPSSDRGGMHIEYARSKM 281
L +S + G+ + ++++ +
Sbjct: 471 YGYKLSNSIKTGIRLSFSKNPL 492
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 116 (45.9 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 50/185 (27%), Positives = 79/185 (42%)
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
AF F + +A AL E+NG F + + I+ +S S K G Y+ +K+ +
Sbjct: 57 AFIVFKDITSASNALREMNGFNFLDRP---MKIQYCKSKSDAVSKL-DGTYM--EKKRER 110
Query: 138 EANVQESSSADGD-SDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEG 196
E N ++ S+ D T + + A TT + T S V+ + P
Sbjct: 111 EENDKKGSNKKQDRKSTGQQQQQQKRPGAPTS---TTSTTSPTTSNGTVSLQPRDDP--- 164
Query: 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIA 255
P TLF+ NL C L S + GF + M ++ G +AF +FE+ ++ A
Sbjct: 165 ---PNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKG--IAFIEFEDEIKSGFA 219
Query: 256 MEGLQ 260
M LQ
Sbjct: 220 MTNLQ 224
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 109 (43.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 98
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 99 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 153
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 154 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 209
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 210 NPSQKSSQALLSQLYQSPNRRYPG 233
Score = 46 (21.3 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 270 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 329
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 330 NGYRLGDRVLQVS 342
>CGD|CAL0002334 [details] [associations]
symbol:WHI3 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0007124 "pseudohyphal growth"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IEA] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IEA] [GO:0008361 "regulation of cell size"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0002334 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000020 EMBL:AACQ01000016 eggNOG:NOG255497
RefSeq:XP_720821.1 RefSeq:XP_721334.1 RefSeq:XP_888839.1
ProteinModelPortal:Q5AH44 STRING:Q5AH44 GeneID:3636991
GeneID:3637479 GeneID:3703850 KEGG:cal:CaO19.13847
KEGG:cal:CaO19.6494 KEGG:cal:CaO19_6494 Uniprot:Q5AH44
Length = 704
Score = 97 (39.2 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 39/154 (25%), Positives = 66/154 (42%)
Query: 102 PQSGSVLHIELARSNS-------RKKRKPGSGAYVV--------IDKRTKTEANVQESS- 145
PQS S LHI+ +++ +++++P + + + I N+ + S
Sbjct: 431 PQSQSQLHIQQSQAQQHHQQQQQQQQQQPNTQSQIAPQTSNTSSITNEFHAPPNISQQSI 490
Query: 146 -SADGDSDTDEASPVRN-IDSA-DKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCS 202
S + T ++P + I S DKG +T S+ D P + PC+
Sbjct: 491 TSNQNTTSTSTSTPTQQAITSPLDKG---STSSKDVPDLSLLARVPPPANPADQN-PPCN 546
Query: 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR 236
TL++ NL P+ TE EL+ S GF L R +
Sbjct: 547 TLYVGNLPPDATESELRTLFSPQKGFRRLSFRTK 580
Score = 59 (25.8 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 240 PVAFADFEEVEQASIAMEGLQDSTLP----SSDRGGMHIEYARSKM 281
P+ F +FE+V A+ A+ L LP + +GG+ + ++++ +
Sbjct: 605 PMCFVEFEDVAHATRALAELYGRALPRPNGGNGKGGIRLSFSKNPL 650
Score = 45 (20.9 bits), Expect = 0.00016, Sum P(3) = 0.00016
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 29 QQQDNGINT--LFVSGLPDDVRAREIHNLF 56
QQ D+ + T L +S LP D+ RE +F
Sbjct: 44 QQVDSNMTTGLLKISNLPPDLTRREATLIF 73
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 109 (43.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 100
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 101 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 155
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 156 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 211
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPG 235
Score = 46 (21.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 345 NGYRLGDRVLQVS 357
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 109 (43.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 100
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 101 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 155
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 156 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 211
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPG 235
Score = 46 (21.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 345 NGYRLGDRVLQVS 357
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 105
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 106 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 160
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 161 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 216
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 217 NPSQKTSQALLSQLYQSPNRRYPG 240
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 350 NGYRLGDRVLQVS 362
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 105
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 106 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 160
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 161 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 216
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPG 240
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 290 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 349
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 350 NGYRLGDRVLQVS 362
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 93
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 94 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 148
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 149 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 204
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 205 NPSQKSSQALLSQLYQSPNRRYPG 228
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 352 NGYRLGDRVLQVS 364
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 109 (43.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 93
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 94 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 148
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 149 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 204
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 205 NPSQKSSQALLSQLYQSPNRRYPG 228
Score = 46 (21.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 292 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 351
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 352 NGYRLGDRVLQVS 364
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 100
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 101 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 155
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 156 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 211
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPG 235
Score = 46 (21.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 359 NGYRLGDRVLQVS 371
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 109 (43.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 100
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 101 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 155
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 156 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 211
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 212 NPSQKSSQALLSQLYQSPNRRYPG 235
Score = 46 (21.3 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 359 NGYRLGDRVLQVS 371
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 58 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 116
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 117 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 171
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 172 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 227
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 228 NPSQKSSQALLSQLYQSPNRRYPG 251
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 301 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 360
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 361 NGYRLGDRVLQVS 373
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 46 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 104
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 105 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 159
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 160 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 215
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 216 NPSQKSSQALLSQLYQSPNRRYPG 239
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 303 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 362
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 363 NGYRLGDRVLQVS 375
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 105
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 106 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 160
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 161 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 216
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPG 240
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 364 NGYRLGDRVLQVS 376
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 109 (43.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 46/204 (22%), Positives = 89/204 (43%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTA 88
D+ L V+ LP ++ E +LF + C+L K TG+ + F +++ + A
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYGFVNYIDPKDA 105
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSAD 148
A++ LNG++ ++ + + AR +S R + YV +T T+ +++ S
Sbjct: 106 EKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQKELEQLFSQY 160
Query: 149 GDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIA 207
G T V + +G F+ + ++ ++ A+ +N +KP G +P + F
Sbjct: 161 GRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGATEPITVKFAN 216
Query: 208 NLGPNCTEDELKQTLSV----YPG 227
N ++ L Q YPG
Sbjct: 217 NPSQKSSQALLSQLYQSPNRRYPG 240
Score = 46 (21.3 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKM-------RARGGMPVAFADFEEVEQASIAM 256
+F+ NL P+ E L Q + N +K+ + +G V +++E A ++
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363
Query: 257 EG--LQDSTLPSS 267
G L D L S
Sbjct: 364 NGYRLGDRVLQVS 376
>SGD|S000005141 [details] [associations]
symbol:WHI3 "RNA binding protein that sequesters CLN3 mRNA in
cytoplasmic foci" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;ISS;IMP;IDA] [GO:0008361
"regulation of cell size" evidence=IGI;IMP] [GO:0007124
"pseudohyphal growth" evidence=IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0001403 "invasive growth in response to glucose
limitation" evidence=IMP] [GO:0051220 "cytoplasmic sequestering of
protein" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005141
GO:GO:0005737 GO:GO:0051220 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006947 GO:GO:0008361 GO:GO:0003723 GO:GO:0007049
GO:GO:0001403 GO:GO:0007124 EMBL:X78898 OrthoDB:EOG42592X
eggNOG:NOG255497 EMBL:U01095 EMBL:Z71473 PIR:S50734
RefSeq:NP_014202.1 ProteinModelPortal:P34761 SMR:P34761
IntAct:P34761 MINT:MINT-4500279 STRING:P34761 PaxDb:P34761
PeptideAtlas:P34761 EnsemblFungi:YNL197C GeneID:855524
KEGG:sce:YNL197C CYGD:YNL197c GeneTree:ENSGT00530000067542
HOGENOM:HOG000074699 OMA:QRSRFSF NextBio:979559
Genevestigator:P34761 GermOnline:YNL197C Uniprot:P34761
Length = 661
Score = 118 (46.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM-------PVAFADFEEVEQA 252
PC+TL++ NL + TE EL+Q S GF L R + P+ F +F++V A
Sbjct: 536 PCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFA 595
Query: 253 SIAMEGLQDSTLPSS---DRGGMHIEYARSKM 281
+ A+ L LP S +GG+ + ++++ +
Sbjct: 596 TRALAELYGRQLPRSTVSSKGGIRLSFSKNPL 627
Score = 42 (19.8 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 35 INTLFVSGLPDDVRAREIHN 54
+NTL + +P D+ + I N
Sbjct: 74 LNTLALGSMPQDIASSNISN 93
>POMBASE|SPBC660.11 [details] [associations]
symbol:tcg1 "single-stranded telomeric binding protein
Tgc1" species:4896 "Schizosaccharomyces pombe" [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0000781 "chromosome,
telomeric region" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IEP] [GO:0042254 "ribosome biogenesis" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.11 GO:GO:0005829 GO:GO:0005634
GO:GO:0007126 GO:GO:0033554 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0042254
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0043047
OrthoDB:EOG4S4SRP EMBL:AY007252 PIR:T40623 RefSeq:NP_595090.2
ProteinModelPortal:Q9HEQ9 GeneID:2541062 eggNOG:NOG72438
NextBio:20802176 Uniprot:Q9HEQ9
Length = 349
Score = 115 (45.5 bits), Expect = 0.00028, P = 0.00028
Identities = 62/254 (24%), Positives = 99/254 (38%)
Query: 29 QQQDNGINTLFVSGLPDDVRAREIHNLFR-----RKPGFDFCQLKYTGRGNQVV----AF 79
QQ D+ +FV L + EI +LF RK F +++ RG ++V AF
Sbjct: 40 QQADDF--RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR---RGTRLVPSGIAF 94
Query: 80 ATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEA 139
TF N + A+ LNG D + V + K RK + +T
Sbjct: 95 VTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQPIKDRKKSKNKN---GEEPETST 151
Query: 140 NVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQ 199
+V+ + SA G SD +EA+ S + Q+E G+ N KP
Sbjct: 152 SVENAESAKGSSDENEANTATAPSSNEANGVDKKQNEIKGKGGSGK---NKAKPL----- 203
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVY------------PGFNMLKMRARG----GMPVAF 243
P ++++++ L T + LK+ Y P + + +++ RG G F
Sbjct: 204 PPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGF 263
Query: 244 ADFEEVEQASIAME 257
F E S A+E
Sbjct: 264 VSFANAEDQSRAIE 277
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.130 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 284 258 0.00087 114 3 11 23 0.37 34
32 0.48 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 55
No. of states in DFA: 569 (61 KB)
Total size of DFA: 165 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.48u 0.10s 24.58t Elapsed: 00:00:01
Total cpu time: 24.48u 0.10s 24.58t Elapsed: 00:00:01
Start: Thu May 9 20:33:34 2013 End: Thu May 9 20:33:35 2013