BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023320
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93062|RBPMS_HUMAN RNA-binding protein with multiple splicing OS=Homo sapiens GN=RBPMS
PE=1 SV=1
Length = 196
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 25 PYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN 84
P Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F +
Sbjct: 13 PSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDS 70
Query: 85 HQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKR 121
A AA + LNG++FDP+ L +E A++N++ +
Sbjct: 71 RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTKMAK 107
>sp|Q9YGP5|RBPMS_XENLA RNA-binding protein with multiple splicing OS=Xenopus laevis
GN=rbpms PE=2 SV=1
Length = 196
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF N A AA +
Sbjct: 19 VRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAGAEAAKNA 76
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKR 121
LNG++FDP++ L +E A++N++ +
Sbjct: 77 LNGIRFDPENPQTLRLEFAKANTKMAK 103
>sp|Q9WVB0|RBPMS_MOUSE RNA-binding protein with multiple splicing OS=Mus musculus GN=Rbpms
PE=2 SV=2
Length = 197
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Query: 25 PYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN 84
P Q+ + TLFVSGLP D++ RE++ LFR G++ +K T + Q V F +F +
Sbjct: 13 PSEANLQEEEVRTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVSFDS 70
Query: 85 HQTAVAALHELNGVKFDPQSGSVLHIELARSNSR 118
A AA + LNG++FDP+ L +E A++N++
Sbjct: 71 RSEAEAAKNALNGIRFDPEIPQTLRLEFAKANTK 104
>sp|Q9W6I1|RBPMS_CHICK RNA-binding protein with multiple splicing OS=Gallus gallus
GN=RBPMS PE=2 SV=1
Length = 200
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T + Q V F TF + A AA +
Sbjct: 21 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 78
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKR 121
LNG++FDP++ L +E A++N++ +
Sbjct: 79 LNGIRFDPENPQTLRLEFAKANTKMAK 105
>sp|Q6ZRY4|RBPS2_HUMAN RNA-binding protein with multiple splicing 2 OS=Homo sapiens
GN=RBPMS2 PE=2 SV=1
Length = 209
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 30 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNA 87
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKR 121
LNG++FDP++ L +E A++N++ +
Sbjct: 88 LNGIRFDPENPQTLRLEFAKANTKMAK 114
>sp|Q8VC52|RBPS2_MOUSE RNA-binding protein with multiple splicing 2 OS=Mus musculus
GN=Rbpms2 PE=1 SV=1
Length = 206
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 2/87 (2%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94
+ TLFVSGLP D++ RE++ LFR G++ +K T R Q V F F + A AA +
Sbjct: 24 VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 81
Query: 95 LNGVKFDPQSGSVLHIELARSNSRKKR 121
LNG++FDP++ L +E A++N++ +
Sbjct: 82 LNGIRFDPENPQTLRLEFAKANTKMAK 108
>sp|Q01617|CPO_DROME Protein couch potato OS=Drosophila melanogaster GN=cpo PE=2 SV=3
Length = 738
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAA 91
+ TLFVSGLP D + RE++ LFR G++ LK T + + V F TF A AA
Sbjct: 450 VRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAA 509
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSR-KKRKP 123
+L GV+FDP + +E A+SN++ K KP
Sbjct: 510 KQDLQGVRFDPDMPQTIRLEFAKSNTKVSKPKP 542
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 178 ATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM 233
A + NA P N P PCSTLF+ANLG +E ELK+ S + N LK+
Sbjct: 683 AGSTNNASHPGN---PQIAANAPCSTLFVANLGQFVSEHELKEVFSSHGNSNWLKL 735
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
PC+T+++ NL P+ +E+ELK S G+ L R +G P+ F +FE + A A++ L
Sbjct: 424 PCNTIYVGNLPPSTSEEELKVLFSTQVGYKRLCFRTKGNGPMCFVEFENIPYAMEALKNL 483
Query: 260 QDSTLPSSDRGGMHIEYARSKM 281
Q L SS +GG+ + ++++ +
Sbjct: 484 QGVCLSSSIKGGIRLSFSKNPL 505
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 14 IHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG 73
IH P P + Q+ NT++V LP E+ LF + G+ +L + +G
Sbjct: 404 IHQRIPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFSTQVGYK--RLCFRTKG 461
Query: 74 NQVVAFATFVNHQTAVAALHELNGV 98
N + F F N A+ AL L GV
Sbjct: 462 NGPMCFVEFENIPYAMEALKNLQGV 486
>sp|O59784|MDE7_SCHPO RNA-binding protein mde7 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mde7 PE=4 SV=1
Length = 761
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
PC+T+++ NL E +L+ S G+ L + +G P+ F +FEEV A+ AME +
Sbjct: 600 PCNTIYVGNLSNPDQEKKLRLAFSKEKGYRRLCFKIKGNSPMCFVEFEEVCHAAKAMEKM 659
Query: 260 QDSTLPSSDRGGMHIEYARSKM 281
Q + L +GG+ + Y+++ +
Sbjct: 660 QGAALDDKIKGGIRLSYSKNPL 681
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 39 FVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97
V GLPDD RE+ +F G+DF +++ + + + F N A+ A + LN
Sbjct: 223 IVGGLPDDFDDRELSGIFTFCEGYDFSKIESENGHRKAIVY--FRNAIAALKAKNMLNA 279
>sp|Q07655|WHI4_YEAST Protein WHI4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI4 PE=1 SV=1
Length = 649
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 15/97 (15%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG----------MPVAFADFEEV 249
PC+TL++ NL P+ TE EL+Q S GF L R + P+ F +FE+V
Sbjct: 531 PCNTLYVGNLPPDATEQELRQLFSNQQGFRRLSFRNKMNSHGHGNGHGHGPICFVEFEDV 590
Query: 250 EQASIAMEGLQDSTLPS-----SDRGGMHIEYARSKM 281
A+ A+ L S LP +++GG+ + ++++ +
Sbjct: 591 SFATRALAELYGSQLPHPRPSLNNKGGIRLSFSKNPL 627
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 23 PPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV------ 76
PPP + Q+ NTL+V LP D +E+ LF + GF +L + + N
Sbjct: 520 PPPANPADQNPPCNTLYVGNLPPDATEQELRQLFSNQQGFR--RLSFRNKMNSHGHGNGH 577
Query: 77 ----VAFATFVNHQTAVAALHELNGVKF 100
+ F F + A AL EL G +
Sbjct: 578 GHGPICFVEFEDVSFATRALAELYGSQL 605
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 113/262 (43%), Gaps = 51/262 (19%)
Query: 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFV----------NHQ 86
T++++ L + V+ E+ ++ F Q G+ +++AF TF N +
Sbjct: 19 TIYINNLNEKVKLDEL----KKSLNAVFSQF---GKILEILAFKTFKHKGQAWVVFDNTE 71
Query: 87 TAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSS 146
+A A+ ++N F + + I+ A++ S K G +V +KR + E
Sbjct: 72 SASTAIAKMNNFPFYDKE---MRIQYAKTKSDVVAK-ADGTFVPREKRKRHEEKGGGKKK 127
Query: 147 ADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPC----- 201
D D+ + ++SA G + AP S+ PY GG++P
Sbjct: 128 KDQHHDSTQMG--MPMNSAYPGVY-------------GAAPPLSQVPYPGGMKPNMPEAP 172
Query: 202 ----STLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAM 256
+ LF+ NL T L+ Y GF ++M A+ G +AF +F + Q+++AM
Sbjct: 173 APPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG--IAFVEFADEMQSTVAM 230
Query: 257 EGLQDSTLPSSDRGGMHIEYAR 278
+GLQ + + M I YA+
Sbjct: 231 QGLQGFKI---QQNQMLITYAK 249
Score = 35.4 bits (80), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 198 VQPCSTLFIANLGPNCTEDELKQTL-SVYPGF----NMLKMRARGGMPVAFADFEEVEQA 252
V P T++I NL DELK++L +V+ F +L + A+ F+ E A
Sbjct: 14 VSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESA 73
Query: 253 SIAMEGLQDSTLPSSDRGGMHIEYARSK 280
S A+ + + P D+ M I+YA++K
Sbjct: 74 STAIAKMNN--FPFYDK-EMRIQYAKTK 98
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 12/87 (13%)
Query: 14 IHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG 73
+ P P P PP N LFV LP + + LF + GF ++ G
Sbjct: 164 MKPNMPEAPAPPN---------NILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPG 214
Query: 74 NQVVAFATFVNHQTAVAALHELNGVKF 100
+AF F + + A+ L G K
Sbjct: 215 ---IAFVEFADEMQSTVAMQGLQGFKI 238
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 100/250 (40%), Gaps = 37/250 (14%)
Query: 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFAT-------FVNHQTAV 89
++++ L + ++ E+ +C GR VVA T +V
Sbjct: 11 SIYIQNLNERIKKEELKRSL-------YCLFSQFGRILDVVALKTPKLRGQAWVTFSEVT 63
Query: 90 AALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADG 149
AA H + ++ P + ++ A++ S K G +V DK+ K E V E D
Sbjct: 64 AAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAK-AEGTFVPKDKKRKQEEKV-ERKREDS 121
Query: 150 DSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANL 209
P N SA+ G + SG P P + LFI NL
Sbjct: 122 QRPNTANGPSANGPSANNG----VPAPSFQPSGQETMP------------PNNILFIQNL 165
Query: 210 GPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268
T L+ YPGF ++M A+ G +AF ++E+ QASIAM+ LQ + +
Sbjct: 166 PHETTSMMLQLLFEQYPGFKEIRMIDAKPG--IAFVEYEDDVQASIAMQPLQGFKI--TP 221
Query: 269 RGGMHIEYAR 278
+ M I +A+
Sbjct: 222 QNPMVISFAK 231
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
N LF+ LP + + + LF + PGF ++ G +AF + + A A+ L
Sbjct: 158 NILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG---IAFVEYEDDVQASIAMQPL 214
Query: 96 NGVKFDPQSGSVL 108
G K PQ+ V+
Sbjct: 215 QGFKITPQNPMVI 227
>sp|P34761|WHI3_YEAST Protein WHI3 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=WHI3 PE=1 SV=1
Length = 661
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM-------PVAFADFEEVEQA 252
PC+TL++ NL + TE EL+Q S GF L R + P+ F +F++V A
Sbjct: 536 PCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPMCFVEFDDVSFA 595
Query: 253 SIAMEGLQDSTLPS---SDRGGMHIEYARSKM 281
+ A+ L LP S +GG+ + ++++ +
Sbjct: 596 TRALAELYGRQLPRSTVSSKGGIRLSFSKNPL 627
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 23 PPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK-----YTGRGNQVV 77
PPP + Q+ NTL+V LP D +E+ LF + GF + G + +
Sbjct: 525 PPPANPADQNPPCNTLYVGNLPSDATEQELRQLFSGQEGFRRLSFRNKNTTSNGHSHGPM 584
Query: 78 AFATFVNHQTAVAALHELNGVKF 100
F F + A AL EL G +
Sbjct: 585 CFVEFDDVSFATRALAELYGRQL 607
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 181 SGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTL-SVYPGF----NMLKMRA 235
SG A + P E G P T++I NL +ELK++L +V+ F ++L +
Sbjct: 2 SGEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKT 61
Query: 236 RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280
A+ FE+V A+ A++ +QD P ++ M I+YA++K
Sbjct: 62 LKHKGQAWVVFEDVASATEALKSMQD--FPFHNK-PMRIQYAKTK 103
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 45/258 (17%)
Query: 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFAT-------FVNHQTAV 89
T++++ L + ++ E+ R F Q G+ V+AF T +V +
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAV----FSQF---GKILDVLAFKTLKHKGQAWVVFEDVA 76
Query: 90 AALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADG 149
+A L ++ P + I+ A++ S K G +V ++R + + ++ +
Sbjct: 77 SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAK-ADGTFVPRERRKRNDEKPEKKQKREQ 135
Query: 150 DSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGG--------VQPC 201
D + N G AP S+ P+ G + P
Sbjct: 136 HHDVSQVGLGVNAYPGVYG-----------------APPLSQLPFAGAQKVMMPEIIVPN 178
Query: 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEGLQ 260
+ LF+ NL T L+ YPGF ++M A+ G +AF ++ + QA+ AM LQ
Sbjct: 179 NILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAMNHLQ 236
Query: 261 DSTLPSSDRGGMHIEYAR 278
+ ++ M I YA+
Sbjct: 237 GFKITKDNQ--MLISYAK 252
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
N LFV LP + + LF + PGF ++ G +AF + + A AA++ L
Sbjct: 179 NILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG---IAFVEYGDEGQATAAMNHL 235
Query: 96 NGVKF 100
G K
Sbjct: 236 QGFKI 240
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 181 SGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTL-SVYPGF----NMLKMRA 235
SG A + P E G P T++I NL +ELK++L +V+ F ++L +
Sbjct: 2 SGEVAAAVGGGAPEENGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKT 61
Query: 236 RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280
A+ FE+V A+ A++ +QD P ++ M I+YA++K
Sbjct: 62 LKHKGQAWVVFEDVASATEALKSMQD--FPFHNK-PMRIQYAKTK 103
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 45/258 (17%)
Query: 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFAT-------FVNHQTAV 89
T++++ L + ++ E+ R F Q G+ V+AF T +V +
Sbjct: 24 TIYINNLNEKIKLEELKKSLRAV----FSQF---GKILDVLAFKTLKHKGQAWVVFEDVA 76
Query: 90 AALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADG 149
+A L ++ P + I+ A++ S K G +V ++R + + ++ +
Sbjct: 77 SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAK-ADGTFVPRERRKRNDEKPEKKQKREQ 135
Query: 150 DSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGG--------VQPC 201
D + N G AP S+ P+ G + P
Sbjct: 136 HHDVSQVGLGVNAYPGVYG-----------------APPLSQLPFAGAQKVMMPEIIVPN 178
Query: 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEGLQ 260
+ LF+ NL T L+ YPGF ++M A+ G +AF ++ + QA+ AM LQ
Sbjct: 179 NILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG--IAFVEYGDEGQATAAMNHLQ 236
Query: 261 DSTLPSSDRGGMHIEYAR 278
+ ++ M I YA+
Sbjct: 237 GFKITKDNQ--MLISYAK 252
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
N LFV LP + + LF + PGF ++ G +AF + + A AA++ L
Sbjct: 179 NILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPG---IAFVEYGDEGQATAAMNHL 235
Query: 96 NGVKF 100
G K
Sbjct: 236 QGFKI 240
>sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1
Length = 413
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 36 NTLFVSGLPDDVRAREIHNLF-----RRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
L++ L V+ R++ +LF ++ P F + RG AF TF N A
Sbjct: 309 KVLYLKNLSPRVKERDLISLFARFQEKKGPPIQFRMMTGRMRGQ---AFLTFPNKDIAWQ 365
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSRK 119
ALH++NG K G +L IE A+S ++
Sbjct: 366 ALHQINGYKL---YGKILVIEFAKSKKQQ 391
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 129 VVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADK-GDFVTTQSERATDSGNAVAP 187
V++ T + + E G++D+D S N+ D G+ + + +E D N
Sbjct: 24 AVLETETSQDIHQLEIEKDAGETDSDAGSIAMNVHQLDTAGEPLQSMNEDEVDPNNESTA 83
Query: 188 INSEKPY---EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-MR---ARGGMP 240
++ ++P EG + LF++ + EDEL+Q S + ++ MR +
Sbjct: 84 LDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRG 143
Query: 241 VAFADFEEVEQASIAMEGL 259
F F VE+A+ A++ L
Sbjct: 144 FGFLSFSTVEEATSAIDNL 162
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY--TGRGNQVVAFATFVNHQTAVAALH 93
N LFVSG+ ++ E+ +F + ++ + ++ F +F + A +A+
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160
Query: 94 ELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
LN +F G VL+++ A+ + + P G Y+ D+R +
Sbjct: 161 NLNSQEF---YGRVLNVQKAKRS--RPHSPTPGKYMGYDRRRNS 199
>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1
Length = 516
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALH 93
G TL V LP ++ A E +L + L GR AFATF N +TAV AL
Sbjct: 25 GDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRDLSDKGRLKHT-AFATFPNEKTAVKALT 83
Query: 94 ELNGVKFDPQSGSVLHIELARSNSR 118
L+ +K G L +E A+ R
Sbjct: 84 RLHQLKL---LGHTLVVEFAKEQDR 105
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 71/296 (23%), Positives = 109/296 (36%), Gaps = 56/296 (18%)
Query: 14 IHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYT 70
+HPP PP YHH Q + TL++ L V + + F + ++ K T
Sbjct: 4 MHPPQPP--QGSYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKIT 61
Query: 71 GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPG------ 124
G+ + F F++H A L NG + P + + A S +K G
Sbjct: 62 GQ-PEGYGFIEFISHAAAERTLQTYNGTQM-PGTELTFRLNWASFGSGQKVDAGPDHSIF 119
Query: 125 ------------------------SGAYVVID---KRTKTEANVQESSSADGDSDTDEAS 157
GA VV D R+K V+ + ++ + E +
Sbjct: 120 VGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMN 179
Query: 158 -------PVRNIDSADKGDFVTTQSERATDSGNAV-APINSEKPYEGGVQP------CST 203
P+R I +A V Q + T + V P P + V P C+T
Sbjct: 180 GLYCSTRPMR-ISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTT 238
Query: 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAMEG 258
+ +ANL N TE+ELK+ S +K+ A G V F E+A M+G
Sbjct: 239 ISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQG 294
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97
++V LP DVR +E+ ++F + + +K +GRG AF F +H+ A A+ +G
Sbjct: 11 VYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRG-PAFAFVEFEDHRDAEDAVRARDG 68
Query: 98 VKFDPQSGSVLHIEL 112
+FD G + +E
Sbjct: 69 YEFD---GRRIRVEF 80
>sp|Q5JQF8|PAP1M_HUMAN Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A
PE=2 SV=1
Length = 200
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 60/130 (46%), Gaps = 14/130 (10%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
+ +G+ +F+ L + + ++N+F C++ +G + F F ++A
Sbjct: 85 RKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAER 144
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGD 150
A+ +NG+ + + I + R S K+R+ GA+ R T A+V+ D +
Sbjct: 145 AIDVMNGMFLNYRK-----IFVGRFKSHKEREAERGAWA----RQSTSADVK-----DFE 190
Query: 151 SDTDEASPVR 160
DTDE + +R
Sbjct: 191 EDTDEEATLR 200
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEG 258
P + LFI NL T L+ YPGF ++M A+ G +AF ++E+ Q+ +AM+
Sbjct: 156 PNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQA 213
Query: 259 LQDSTLPSSDRGGMHIEYAR 278
LQ + + M I YA+
Sbjct: 214 LQGFKI--TPYNPMAISYAK 231
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 19 PPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVA 78
PP PP N LF+ LP + + + LF++ PGF ++ G +A
Sbjct: 152 PPAPPN-----------NILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG---IA 197
Query: 79 FATFVNHQTAVAALHELNGVKFDP 102
F + + ++ A+ L G K P
Sbjct: 198 FVEYEDDSQSMVAMQALQGFKITP 221
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEG 258
P + LFI NL T L+ YPGF ++M A+ G +AF ++E+ Q+ +AM+
Sbjct: 156 PNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG--IAFVEYEDDSQSMVAMQA 213
Query: 259 LQDSTLPSSDRGGMHIEYAR 278
LQ + + M I YA+
Sbjct: 214 LQGFKI--TPYNPMAISYAK 231
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 19 PPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVA 78
PP PP N LF+ LP + + + LF++ PGF ++ G +A
Sbjct: 152 PPAPPN-----------NILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPG---IA 197
Query: 79 FATFVNHQTAVAALHELNGVKFDP 102
F + + ++ A+ L G K P
Sbjct: 198 FVEYEDDSQSMVAMQALQGFKITP 221
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 1 MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQ------DNGINTLFVSGLPDDVRAREIHN 54
+A P + P++ P +PP ++ Q D +T+FV GL V E+
Sbjct: 262 LATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKY 321
Query: 55 LFRRKPGFDFCQLKYT----GRGNQVVAFATFVNHQTAVAALHELNG 97
LF+ +F ++ Y G+G F FVN Q+A A+++L G
Sbjct: 322 LFQ-----NFGEIVYVKIPPGKG---CGFVQFVNRQSAEIAINQLQG 360
>sp|P78795|EIF3G_SCHPO Eukaryotic translation initiation factor 3 subunit G
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tif35 PE=1 SV=2
Length = 282
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVAFATFVNHQTAVAALH 93
TL V+ L DD R E+ +LFRR G L K TGR + AF ++ + A+ A
Sbjct: 203 TLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRA-KGFAFVSYYDRDCAIKARD 261
Query: 94 ELNGVKFDPQSGSVLHIELAR 114
L+G ++ +L E ++
Sbjct: 262 RLDGYGWN---NLILRCEFSK 279
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM-RARGGMPVAFADFEEVEQASIAMEG 258
P + LFI NL L+ YPGF ++M A+ G +AF ++E+ Q+S+AM+
Sbjct: 153 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG--IAFVEYEDDVQSSMAMQA 210
Query: 259 LQ 260
LQ
Sbjct: 211 LQ 212
Score = 38.5 bits (88), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 21 VPPPPYHHQQQDNG--INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVA 78
+P PP+ QD N LF+ LP + + + LF + PGF ++ G +A
Sbjct: 138 MPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPG---IA 194
Query: 79 FATFVNHQTAVAALHELNGVKFDPQSGSVL 108
F + + + A+ L G K PQ+ V+
Sbjct: 195 FVEYEDDVQSSMAMQALQGFKITPQNPMVV 224
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
T++V LP D+R RE+ +LF + LK R AF F + + A A+H
Sbjct: 7 RTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR-PPGYAFVEFDDARDAEDAIHGR 65
Query: 96 NGVKFDPQSGSVLHIELARSNSR 118
+G FD G L +ELA R
Sbjct: 66 DGYDFD---GHRLRVELAHGGRR 85
>sp|Q9HEQ9|TCG1_SCHPO Single-stranded TG1-3 DNA-binding protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=tcg1 PE=1 SV=3
Length = 349
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 102/253 (40%), Gaps = 51/253 (20%)
Query: 38 LFVSGLPDDVRAREIHNLFR-----RKPGFDFCQLKYTGRGNQVV----AFATFVNHQTA 88
+FV L + EI +LF RK F +++ RG ++V AF TF N +
Sbjct: 47 VFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVR---RGTRLVPSGIAFVTFNNQEDV 103
Query: 89 VAALHELNGVKFDPQSGSVLHIELAR------SNSRKKRKPGSGAYVVIDKRTKTEANVQ 142
A+ LNG D + + ++ AR RKK K +G + +T +V+
Sbjct: 104 DKAIETLNGKTLDDRE---IVVQKARPVQEQPIKDRKKSKNKNG------EEPETSTSVE 154
Query: 143 ESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCS 202
+ SA G SD +EA+ S+++ + V + N + + P +
Sbjct: 155 NAESAKGSSDENEANTA-TAPSSNEANGVDKKQ-------NEIKGKGGSGKNKAKPLPPN 206
Query: 203 TLFIANLGPNCTEDELKQTLSVY------------PGFNMLKMRARG----GMPVAFADF 246
+++++ L T + LK+ Y P + + +++ RG G F F
Sbjct: 207 SIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRGFGFVSF 266
Query: 247 EEVEQASIAMEGL 259
E S A+E +
Sbjct: 267 ANAEDQSRAIEEM 279
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVY---PGFNMLKMRARGGMPVAFADFEEVE 250
Y +PC +L++ +GPN ++D+L++ S + F L+ R AF D+ E++
Sbjct: 87 YARPAKPCKSLWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERK-----TAFIDYYEMD 141
Query: 251 QASIAMEGLQDSTLPSSDRGG--MHIEYARSKMRK 283
A LQ ++ GG + +++ RS+ K
Sbjct: 142 DA------LQAKSMNGKPMGGSFLRVDFLRSQAPK 170
>sp|Q10277|MSA1_SCHPO Multicopy suppressor of sporulation protein msa1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msa1 PE=4 SV=1
Length = 533
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVY-----PGFNMLKMRARGGMPVAFADFEEVEQAS 253
+P + LF+A+L + +E+EL T+ Y P ++ ++ P +F F+ + AS
Sbjct: 76 KPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKDWLQRPYSFVQFQNTDDAS 135
Query: 254 IAMEGLQDSTLPSSDRGGMHIEYARSKMRK 283
A+ Q++ L G HI R+K+ +
Sbjct: 136 KALSEAQNTIL-----DGRHIRIERAKVNR 160
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 38.5 bits (88), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 97/247 (39%), Gaps = 35/247 (14%)
Query: 37 TLFVSGLPDDVRAREI-HNLFRRKPGF----DFCQLKYTGRGNQVVAFATFVNHQTAVAA 91
T++++ + D ++ E+ +L+ F D LK Q AF F ++ A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQ--AFVIFKELGSSTNA 65
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDS 151
L +L G F G + I+ A+++S +I K T A+ ++
Sbjct: 66 LRQLQGFPF---YGKPMRIQYAKTDSD-----------IISKMRGTFADKEKKKEKKKAK 111
Query: 152 DTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGP 211
++A+ N + A ++ AP N + P P LF+ NL
Sbjct: 112 TMEQAAAAANKKPGQG-------TPNAANTQGTAAP-NPQVP---DYPPNYILFLNNLPE 160
Query: 212 NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271
E L + +PGF +++ G +AF +FE QA A + LQ + S
Sbjct: 161 ETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQGFKITPSH--A 217
Query: 272 MHIEYAR 278
M I YA+
Sbjct: 218 MKITYAK 224
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 17 PPPPVP--PPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN 74
P P VP PP Y LF++ LP++ + LF + PGF +L GR +
Sbjct: 140 PNPQVPDYPPNY----------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRL-VPGRHD 188
Query: 75 QVVAFATFVNHQTAVAALHELNGVKFDP 102
+AF F N A AA L G K P
Sbjct: 189 --IAFVEFENDGQAGAARDALQGFKITP 214
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 183 NAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML--KMRARGGMP 240
N+ + + E PY G P TLF+ N+ N + EL+ Y L + RG +
Sbjct: 180 NSASTVAGEHPY--GEHPSRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVM 237
Query: 241 VAFADFEEVEQASIAMEGLQDSTL 264
+++ D + A AM GLQ+ L
Sbjct: 238 ISYFD---IRAARGAMRGLQNKPL 258
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 38.1 bits (87), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 54/274 (19%), Positives = 102/274 (37%), Gaps = 44/274 (16%)
Query: 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVA 90
+ +G+ +F+ L D + + +++ F C++ G++ F F H+ A
Sbjct: 94 RKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQ 153
Query: 91 ALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTE---ANVQESSSA 147
A++ +NG+ + + V H + SR++R+ GA + + +V E
Sbjct: 154 AINTMNGMLLNDRKVFVGHFK-----SRREREAELGARALEFTNIYVKNLPVDVDEQGLQ 208
Query: 148 DGDSDTDEASPVRNI--DSADKGDFVTTQSERATDSGNAVAPINSEKP-----YEGGVQP 200
D S + V+ + +S F E+ ++ AV +N ++ Y G Q
Sbjct: 209 DLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQK 268
Query: 201 ------------------------CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR 236
L++ NL + +D+L++ S Y K+
Sbjct: 269 RVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTE 328
Query: 237 GGMP-----VAFADFEEVEQASIAMEGLQDSTLP 265
GG V F+ EE +A M G T P
Sbjct: 329 GGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 362
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 14/203 (6%)
Query: 22 PPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVVA 78
P P D+ L V+ LP ++ E +LF + C+L K TG+ +
Sbjct: 32 PSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGYG 90
Query: 79 FATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTE 138
F +++ + A A++ LNG++ ++ + + AR +S R + YV +T T+
Sbjct: 91 FVNYIDPKDAEKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMTQ 145
Query: 139 ANVQESSSADGDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEGG 197
+++ S G T V + +G F+ + ++ ++ A+ +N +KP G
Sbjct: 146 KELEQLFSQYGRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SGA 201
Query: 198 VQPCSTLFIANLGPNCTEDELKQ 220
+P + F N ++ L Q
Sbjct: 202 TEPITVKFANNPSQKSSQALLSQ 224
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 88/204 (43%), Gaps = 14/204 (6%)
Query: 21 VPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVV 77
P P D+ L V+ LP ++ E +LF + C+L K TG+ +
Sbjct: 36 CPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGY 94
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
F +++ + A A++ LNG++ ++ + + AR +S R + YV +T T
Sbjct: 95 GFVNYIDPKDAEKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMT 149
Query: 138 EANVQESSSADGDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEG 196
+ +++ S G T V + +G F+ + ++ ++ A+ +N +KP G
Sbjct: 150 QKELEQLFSQYGRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SG 205
Query: 197 GVQPCSTLFIANLGPNCTEDELKQ 220
+P + F N ++ L Q
Sbjct: 206 ATEPITVKFANNPSQKSSQALLSQ 229
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 18/92 (19%)
Query: 198 VQPCSTLFIANLGPNCTEDELKQTL-SVYPGFNM---------LKMRARGGMPVAFADFE 247
V+P +T++I NL +DELK++L +++ F LKMR + AF F+
Sbjct: 6 VRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQ-----AFVIFK 60
Query: 248 EVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279
E A+ A+ +Q P D+ M I+Y+++
Sbjct: 61 ETSSATNALRSMQG--FPFYDK-PMRIQYSKT 89
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259
P LF+ NL E L + +PGF +++ G +AF +F+ QA A E L
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFDNEVQAGAARESL 264
Query: 260 QDSTLPSSDRGGMHIEYAR 278
Q + S+ M I +A+
Sbjct: 265 QGFKITQSN--SMKISFAK 281
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95
+ LF++ LP++ + LF + PGF +L GR + +AF F N A AA L
Sbjct: 208 HILFLTNLPEETNELMLSMLFNQFPGFKEVRL-VPGRHD--IAFVEFDNEVQAGAARESL 264
Query: 96 NGVKFDPQSGSVLHIELAR 114
G K QS S + I A+
Sbjct: 265 QGFKIT-QSNS-MKISFAK 281
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 91/215 (42%), Gaps = 18/215 (8%)
Query: 21 VPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQL---KYTGRGNQVV 77
P P D+ L V+ LP ++ E +LF + C+L K TG+ +
Sbjct: 24 CPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ-SLGY 82
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
F +++ + A A++ LNG++ ++ + + AR +S R + YV +T T
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKT---IKVSYARPSSASIRD--ANLYVSGLPKTMT 137
Query: 138 EANVQESSSADGDSDTDEASPVRNIDSADKG-DFVTTQSERATDSGNAVAPINSEKPYEG 196
+ +++ S G T V + +G F+ + ++ ++ A+ +N +KP G
Sbjct: 138 QKELEQLFSQYGRIITSRIL-VDQVTGVSRGVGFI--RFDKRIEAEEAIKGLNGQKP-SG 193
Query: 197 GVQPCSTLFIANLGPNCTEDELKQTLSV----YPG 227
+P + F N ++ L Q YPG
Sbjct: 194 ATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPG 228
>sp|P13383|NUCL_RAT Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3
Length = 713
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 572 QPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 631
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 632 AMEDGEI---DGNKVTLDWAKPK 651
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 571 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 630
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 631 AMEDGEI---DGNKVTLDWAKPK 650
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 629 AMEDGEI---DGNKVTLDWAKPK 648
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 570 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 629
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 630 AMEDGEI---DGNKVTLDWAKPK 649
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY---TGRGNQVVAFATFVNHQTA 88
D + ++FV +P + ++ ++F +L Y TG+ + F + + +TA
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-PKGYGFCEYQDQETA 70
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKK--RKPGSGAYVV 130
++A+ LNG +F SG L ++ A S K+ + G+GA V+
Sbjct: 71 LSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVI 111
>sp|P08199|NUCL_MESAU Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2
Length = 714
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 569 QPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 628
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 629 AMEDGEI---DGNKVTLDWAKPK 648
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 37/265 (13%)
Query: 22 PPPPYHHQQQDNGINT-LFVSGLPDDVRAREIHNLFRRK-PGFDFCQLK--YTGRGNQVV 77
PPP + Q + T +FV +P D+ E+ LF + P +D + TG N+
Sbjct: 57 PPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGL-NRGY 115
Query: 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKT 137
AF TF + A A+ N + +SG + + ++ +N+R +V ++KT
Sbjct: 116 AFVTFCTKEAAQEAVKLYN--NHEIRSGKHIGVCISVANNR--------LFVGSIPKSKT 165
Query: 138 EANVQE--SSSADGDSDT------DEASPVRNIDSADKGDFVT-TQSERATDSGNA---- 184
+ + E S +G +D D+ R + D T Q+ R SG
Sbjct: 166 KEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWG 225
Query: 185 -VAPINSEKPYEG----GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM 239
V + P E + LF+ NL TE+ L+++ S + +K
Sbjct: 226 NVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLK---- 281
Query: 240 PVAFADFEEVEQASIAMEGLQDSTL 264
AF F+E + A AME + L
Sbjct: 282 DYAFIHFDERDGAVKAMEEMNGKDL 306
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 35/247 (14%)
Query: 37 TLFVSGLPDDVRAREI-HNLFRRKPGF----DFCQLKYTGRGNQVVAFATFVNHQTAVAA 91
T++++ + D ++ E+ +L+ F D LK Q AF F ++ A
Sbjct: 8 TIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQ--AFVIFKELGSSTNA 65
Query: 92 LHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDS 151
L +L G F G + I+ A+++S +I K T A+ ++
Sbjct: 66 LRQLQGFPF---YGKPMRIQYAKTDSD-----------IISKMRGTFADKEKKKEKKKAK 111
Query: 152 DTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGP 211
++ + N A GN+ + P P LF+ NL
Sbjct: 112 TVEQTATTTNKKPGQG------TPNSANTQGNS-----TPNPQVPDYPPNYILFLNNLPE 160
Query: 212 NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271
E L + +PGF +++ G +AF +FE QA A + LQ + S
Sbjct: 161 ETNEMMLSMLFNQFPGFKEVRL-VPGRHDIAFVEFENDGQAGAARDALQGFKITPSH--A 217
Query: 272 MHIEYAR 278
M I YA+
Sbjct: 218 MKITYAK 224
Score = 34.7 bits (78), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 17 PPPPVP--PPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN 74
P P VP PP Y LF++ LP++ + LF + PGF +L G
Sbjct: 140 PNPQVPDYPPNY----------ILFLNNLPEETNEMMLSMLFNQFPGFKEVRLV---PGR 186
Query: 75 QVVAFATFVNHQTAVAALHELNGVKFDP 102
+AF F N A AA L G K P
Sbjct: 187 HDIAFVEFENDGQAGAARDALQGFKITP 214
>sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2
Length = 707
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMP-VAFADFEEVEQASIAME 257
QP TLF+ L + TE+ LK++ ++ R G F DF E A A E
Sbjct: 566 QPSKTLFVKGLSEDTTEETLKESFEGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKE 625
Query: 258 GLQDSTLPSSDRGGMHIEYARSK 280
++D + D + +++A+ K
Sbjct: 626 AMEDGEI---DGNKVTLDWAKPK 645
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY---TGRGNQVVAFATFVNHQTA 88
D + ++FV +P + ++ ++F +L Y TG+ + F + + +TA
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-PKGYGFCEYQDQETA 70
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKK--RKPGSGAYVV 130
++A+ LNG +F SG L ++ A S K+ + G+GA V+
Sbjct: 71 LSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVI 111
>sp|A7TQR2|RRT5_VANPO Regulator of rDNA transcription protein 5 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RRT5 PE=3
SV=1
Length = 333
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 204 LFIANLGPNCTEDELKQTLSVY-------PGFNMLKMRARGGMP--VAFADFEEVEQASI 254
++I+NL + TEDEL + L Y P + R+ P +A+ADFE E+A
Sbjct: 33 IYISNLDYSSTEDELIEYLKDYKPLSVLVPSHTVRGFRSNHVKPLGIAYADFETPEKARE 92
Query: 255 AMEGLQDSTL 264
A+E L ++
Sbjct: 93 AVEALNETNF 102
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY---TGRGNQVVAFATFVNHQTA 88
D + ++FV +P + ++ ++F +L Y TG+ + F + + +TA
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-PKGYGFCEYQDQETA 70
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKK--RKPGSGAYVV 130
++A+ LNG +F SG L ++ A S K+ + G+GA V+
Sbjct: 71 LSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVI 111
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY---TGRGNQVVAFATFVNHQTA 88
D + ++FV +P + ++ ++F +L Y TG+ + F + + +TA
Sbjct: 12 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK-PKGYGFCEYQDQETA 70
Query: 89 VAALHELNGVKFDPQSGSVLHIELARSNSRKK--RKPGSGAYVV 130
++A+ LNG +F SG L ++ A S K+ + G+GA V+
Sbjct: 71 LSAMRNLNGREF---SGRALRVDNAASEKNKEELKSLGTGAPVI 111
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,474,093
Number of Sequences: 539616
Number of extensions: 5240327
Number of successful extensions: 45547
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 275
Number of HSP's that attempted gapping in prelim test: 35821
Number of HSP's gapped (non-prelim): 7471
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)