Query 023320
Match_columns 284
No_of_seqs 144 out of 1474
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 03:07:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1457 RNA binding protein (c 100.0 1.5E-34 3.2E-39 225.3 19.7 272 1-275 1-284 (284)
2 TIGR01659 sex-lethal sex-letha 100.0 2.3E-33 5.1E-38 243.7 21.3 167 32-281 104-276 (346)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.2E-32 4.7E-37 241.9 26.3 243 34-282 2-351 (352)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.3E-31 1.1E-35 240.9 26.6 202 32-281 272-481 (481)
5 KOG0117 Heterogeneous nuclear 100.0 5.4E-32 1.2E-36 230.2 16.2 243 21-282 69-333 (506)
6 TIGR01645 half-pint poly-U bin 100.0 4.9E-31 1.1E-35 240.7 21.3 175 33-281 105-285 (612)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-30 3.4E-35 237.8 21.5 172 34-280 1-174 (481)
8 KOG0148 Apoptosis-promoting RN 100.0 2E-30 4.3E-35 207.7 16.6 178 32-280 59-238 (321)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 3.5E-29 7.5E-34 228.3 22.6 235 30-282 53-309 (578)
10 TIGR01622 SF-CC1 splicing fact 100.0 2.8E-29 6E-34 229.4 21.4 174 32-279 86-265 (457)
11 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-29 1.2E-33 232.5 19.7 161 37-280 2-167 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.8E-28 8.3E-33 224.8 23.5 190 30-280 170-375 (509)
13 KOG0144 RNA-binding protein CU 100.0 1.8E-28 3.8E-33 208.0 15.6 170 33-281 32-207 (510)
14 TIGR01628 PABP-1234 polyadenyl 100.0 4.2E-28 9.1E-33 226.7 18.2 185 33-281 176-365 (562)
15 KOG0109 RNA-binding protein LA 100.0 3.4E-28 7.3E-33 196.8 11.0 150 36-282 3-152 (346)
16 TIGR01622 SF-CC1 splicing fact 100.0 3.8E-26 8.3E-31 208.8 25.0 236 34-278 185-446 (457)
17 KOG0131 Splicing factor 3b, su 100.0 2.5E-27 5.4E-32 179.6 13.4 169 31-283 5-180 (203)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-26 1E-30 210.8 21.7 190 32-278 292-500 (509)
19 KOG0145 RNA-binding protein EL 99.9 3.8E-25 8.2E-30 176.6 22.7 242 33-280 38-358 (360)
20 KOG4206 Spliceosomal protein s 99.9 9.4E-26 2E-30 177.6 18.7 212 30-279 4-221 (221)
21 KOG0127 Nucleolar protein fibr 99.9 1.2E-25 2.6E-30 195.9 19.5 239 35-280 117-378 (678)
22 KOG0127 Nucleolar protein fibr 99.9 4E-25 8.7E-30 192.6 15.7 184 36-281 6-197 (678)
23 KOG0123 Polyadenylate-binding 99.9 6.3E-23 1.4E-27 179.5 16.6 150 36-280 2-153 (369)
24 KOG0110 RNA-binding protein (R 99.9 1.7E-23 3.6E-28 187.9 13.1 167 37-279 517-692 (725)
25 KOG0146 RNA-binding protein ET 99.9 1.5E-22 3.3E-27 162.4 11.5 245 34-281 18-366 (371)
26 KOG0144 RNA-binding protein CU 99.9 4.3E-22 9.3E-27 169.4 13.0 83 34-119 123-209 (510)
27 KOG0123 Polyadenylate-binding 99.9 3.7E-21 8E-26 168.4 15.1 165 38-280 79-246 (369)
28 TIGR01645 half-pint poly-U bin 99.9 2E-19 4.4E-24 164.8 25.3 84 32-118 201-286 (612)
29 KOG0124 Polypyrimidine tract-b 99.9 3.2E-21 6.8E-26 161.0 9.9 170 36-279 114-289 (544)
30 KOG1190 Polypyrimidine tract-b 99.8 1.5E-19 3.3E-24 153.0 18.0 224 32-280 147-373 (492)
31 KOG1190 Polypyrimidine tract-b 99.8 1.7E-19 3.7E-24 152.6 17.9 194 35-280 297-491 (492)
32 KOG0105 Alternative splicing f 99.8 4.3E-19 9.2E-24 135.2 17.4 175 33-267 4-178 (241)
33 KOG0110 RNA-binding protein (R 99.8 1.9E-19 4.1E-24 162.0 14.7 206 34-279 384-597 (725)
34 KOG1456 Heterogeneous nuclear 99.8 9E-18 2E-22 140.8 22.7 238 31-280 116-363 (494)
35 KOG0147 Transcriptional coacti 99.8 9.6E-20 2.1E-24 159.8 10.9 228 32-277 275-525 (549)
36 KOG0147 Transcriptional coacti 99.8 4E-20 8.6E-25 162.1 7.2 175 32-278 176-356 (549)
37 KOG0148 Apoptosis-promoting RN 99.8 9.6E-19 2.1E-23 140.8 10.7 136 32-280 3-142 (321)
38 KOG0106 Alternative splicing f 99.8 6.6E-19 1.4E-23 140.5 8.4 166 36-276 2-167 (216)
39 KOG1548 Transcription elongati 99.8 3.2E-17 7E-22 136.4 18.6 202 29-277 128-349 (382)
40 PLN03134 glycine-rich RNA-bind 99.8 4.7E-18 1E-22 130.2 10.4 79 200-281 33-115 (144)
41 KOG4212 RNA-binding protein hn 99.8 1.2E-16 2.6E-21 136.6 18.3 237 33-277 42-291 (608)
42 PLN03134 glycine-rich RNA-bind 99.7 3.2E-17 6.9E-22 125.6 12.4 93 23-118 21-116 (144)
43 KOG1456 Heterogeneous nuclear 99.7 5.7E-15 1.2E-19 124.2 21.9 203 30-280 282-491 (494)
44 KOG4205 RNA-binding protein mu 99.7 1.2E-16 2.6E-21 135.6 9.6 165 34-279 5-175 (311)
45 TIGR01648 hnRNP-R-Q heterogene 99.7 8.5E-16 1.8E-20 140.9 12.4 77 33-118 231-309 (578)
46 TIGR01659 sex-lethal sex-letha 99.7 6.1E-16 1.3E-20 134.9 10.7 79 198-279 104-186 (346)
47 PF00076 RRM_1: RNA recognitio 99.7 1.1E-15 2.3E-20 102.7 9.5 69 38-109 1-70 (70)
48 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 2.2E-15 4.8E-20 133.3 14.0 83 32-117 266-350 (352)
49 PF00076 RRM_1: RNA recognitio 99.6 4.2E-16 9.2E-21 104.7 7.2 67 204-273 1-70 (70)
50 PLN03120 nucleic acid binding 99.6 2.8E-15 6E-20 122.9 10.1 75 201-279 4-79 (260)
51 KOG0107 Alternative splicing f 99.6 1.8E-15 3.9E-20 114.7 8.2 78 201-282 10-87 (195)
52 KOG0125 Ataxin 2-binding prote 99.6 3.2E-15 6.9E-20 123.7 9.5 83 35-120 96-178 (376)
53 KOG0124 Polypyrimidine tract-b 99.6 9E-14 2E-18 116.7 17.9 85 32-119 207-293 (544)
54 KOG0107 Alternative splicing f 99.6 3.7E-15 8E-20 113.0 8.0 79 34-118 9-87 (195)
55 KOG0125 Ataxin 2-binding prote 99.6 5.9E-15 1.3E-19 122.2 9.6 76 201-279 96-173 (376)
56 KOG4212 RNA-binding protein hn 99.6 3.5E-13 7.6E-18 115.6 19.9 74 200-277 535-608 (608)
57 PLN03120 nucleic acid binding 99.6 1.1E-14 2.3E-19 119.5 10.3 77 35-116 4-80 (260)
58 KOG0121 Nuclear cap-binding pr 99.6 5.6E-15 1.2E-19 106.2 7.2 82 32-116 33-116 (153)
59 KOG0114 Predicted RNA-binding 99.6 1.9E-14 4.1E-19 99.6 8.6 74 201-277 18-92 (124)
60 KOG0122 Translation initiation 99.6 1.3E-14 2.8E-19 115.7 8.6 77 201-280 189-269 (270)
61 PLN03213 repressor of silencin 99.6 1.7E-14 3.7E-19 125.4 9.5 77 200-279 9-87 (759)
62 KOG0120 Splicing factor U2AF, 99.5 2.3E-14 4.9E-19 127.6 9.8 185 32-277 286-489 (500)
63 PF14259 RRM_6: RNA recognitio 99.5 1.8E-14 3.9E-19 96.9 7.1 64 204-267 1-67 (70)
64 KOG0121 Nuclear cap-binding pr 99.5 1.9E-14 4.2E-19 103.5 7.1 75 200-277 35-113 (153)
65 PF14259 RRM_6: RNA recognitio 99.5 8E-14 1.7E-18 93.7 9.2 69 38-109 1-70 (70)
66 COG0724 RNA-binding proteins ( 99.5 2.8E-13 6.1E-18 115.2 13.9 172 35-265 115-293 (306)
67 KOG0114 Predicted RNA-binding 99.5 1E-13 2.3E-18 96.0 8.6 80 33-116 16-95 (124)
68 PLN03121 nucleic acid binding 99.5 1.3E-13 2.7E-18 111.4 10.3 77 34-115 4-80 (243)
69 PLN03121 nucleic acid binding 99.5 1.1E-13 2.4E-18 111.8 9.8 73 201-277 5-78 (243)
70 KOG0122 Translation initiation 99.5 1.7E-13 3.7E-18 109.3 10.3 83 31-116 185-269 (270)
71 KOG0145 RNA-binding protein EL 99.5 1.5E-13 3.4E-18 110.4 9.9 79 199-280 39-121 (360)
72 PF13893 RRM_5: RNA recognitio 99.5 1E-13 2.2E-18 88.9 7.1 56 218-277 1-56 (56)
73 smart00362 RRM_2 RNA recogniti 99.5 1.5E-13 3.3E-18 92.1 8.2 69 203-274 1-71 (72)
74 KOG4206 Spliceosomal protein s 99.5 9.2E-14 2E-18 110.1 8.0 80 199-281 7-91 (221)
75 PLN03213 repressor of silencin 99.5 1.5E-13 3.4E-18 119.5 9.7 80 32-116 7-88 (759)
76 KOG0117 Heterogeneous nuclear 99.5 1.3E-13 2.9E-18 118.5 7.8 77 35-120 259-335 (506)
77 KOG4211 Splicing factor hnRNP- 99.4 5.7E-12 1.2E-16 110.0 16.6 159 33-267 8-172 (510)
78 smart00362 RRM_2 RNA recogniti 99.4 8.3E-13 1.8E-17 88.4 8.7 71 37-110 1-71 (72)
79 cd00590 RRM RRM (RNA recogniti 99.4 9.7E-13 2.1E-17 88.6 9.0 71 203-276 1-74 (74)
80 KOG0105 Alternative splicing f 99.4 2.3E-13 5.1E-18 104.1 6.0 77 201-280 6-83 (241)
81 KOG4207 Predicted splicing fac 99.4 1.8E-13 3.8E-18 106.6 5.3 75 201-278 13-91 (256)
82 KOG0108 mRNA cleavage and poly 99.4 3.2E-13 7E-18 119.6 7.4 81 36-119 19-101 (435)
83 smart00360 RRM RNA recognition 99.4 9E-13 1.9E-17 87.9 7.6 67 206-275 1-71 (71)
84 KOG4207 Predicted splicing fac 99.4 4.2E-13 9.1E-18 104.5 6.2 85 29-116 7-93 (256)
85 KOG0111 Cyclophilin-type pepti 99.4 1.9E-13 4.1E-18 107.3 4.1 78 201-281 10-91 (298)
86 KOG0113 U1 small nuclear ribon 99.4 2.2E-12 4.7E-17 105.9 10.2 81 197-280 97-181 (335)
87 KOG0126 Predicted RNA-binding 99.4 3.4E-14 7.4E-19 108.3 -0.6 74 201-277 35-112 (219)
88 KOG0130 RNA-binding protein RB 99.4 1.1E-12 2.4E-17 95.3 6.7 75 201-278 72-150 (170)
89 KOG0149 Predicted RNA-binding 99.4 1E-12 2.2E-17 104.5 6.5 66 201-267 12-81 (247)
90 cd00590 RRM RRM (RNA recogniti 99.4 5.8E-12 1.3E-16 84.7 9.4 73 37-112 1-74 (74)
91 KOG0149 Predicted RNA-binding 99.4 1.3E-12 2.8E-17 103.9 6.8 77 35-115 12-90 (247)
92 KOG0113 U1 small nuclear ribon 99.4 4.8E-12 1E-16 103.8 10.2 83 32-117 98-182 (335)
93 PF13893 RRM_5: RNA recognitio 99.4 4.3E-12 9.3E-17 81.2 8.0 56 52-113 1-56 (56)
94 KOG0112 Large RNA-binding prot 99.4 4.6E-13 9.9E-18 124.0 4.4 161 32-279 369-530 (975)
95 KOG0120 Splicing factor U2AF, 99.3 3.3E-12 7.2E-17 113.9 8.5 186 26-278 166-367 (500)
96 KOG0130 RNA-binding protein RB 99.3 5.3E-12 1.1E-16 91.8 7.8 85 32-119 69-155 (170)
97 smart00360 RRM RNA recognition 99.3 9E-12 1.9E-16 83.0 8.2 68 40-110 1-70 (71)
98 KOG0108 mRNA cleavage and poly 99.3 4.1E-12 8.9E-17 112.7 7.9 78 202-282 19-100 (435)
99 KOG0111 Cyclophilin-type pepti 99.3 1.6E-12 3.4E-17 102.2 4.6 85 32-119 7-93 (298)
100 COG0724 RNA-binding proteins ( 99.3 1.2E-11 2.6E-16 105.1 9.3 75 201-278 115-193 (306)
101 KOG1457 RNA binding protein (c 99.3 2E-11 4.2E-16 96.4 8.7 82 201-282 34-120 (284)
102 KOG0109 RNA-binding protein LA 99.3 5.4E-12 1.2E-16 103.2 5.1 71 203-280 4-74 (346)
103 KOG0131 Splicing factor 3b, su 99.3 1E-11 2.2E-16 95.0 5.9 75 201-278 9-87 (203)
104 KOG0126 Predicted RNA-binding 99.3 7.8E-13 1.7E-17 101.0 -0.1 79 33-114 33-113 (219)
105 KOG0132 RNA polymerase II C-te 99.3 1.3E-11 2.8E-16 112.9 7.6 75 201-280 421-495 (894)
106 KOG4454 RNA binding protein (R 99.2 4.6E-12 1E-16 99.6 1.6 145 32-267 6-153 (267)
107 KOG4660 Protein Mei2, essentia 99.2 4E-11 8.8E-16 106.3 7.4 181 28-278 66-248 (549)
108 smart00361 RRM_1 RNA recogniti 99.2 5.1E-11 1.1E-15 79.8 6.2 57 215-274 2-69 (70)
109 KOG0146 RNA-binding protein ET 99.2 3.2E-11 7E-16 97.6 5.8 83 32-117 282-366 (371)
110 KOG0415 Predicted peptidyl pro 99.2 5.9E-11 1.3E-15 99.6 6.7 83 194-279 232-318 (479)
111 KOG0132 RNA polymerase II C-te 99.1 1.1E-10 2.3E-15 107.0 7.9 80 32-118 418-497 (894)
112 KOG0153 Predicted RNA-binding 99.1 1.1E-10 2.4E-15 97.9 6.9 74 201-279 228-302 (377)
113 KOG0153 Predicted RNA-binding 99.1 3.7E-10 8.1E-15 94.7 8.1 80 29-115 221-302 (377)
114 KOG0129 Predicted RNA-binding 99.1 4.4E-09 9.5E-14 92.8 14.5 168 34-265 258-443 (520)
115 smart00361 RRM_1 RNA recogniti 99.1 1E-09 2.2E-14 73.5 8.0 59 49-110 2-69 (70)
116 KOG0415 Predicted peptidyl pro 99.0 3.8E-10 8.2E-15 94.8 6.2 84 32-118 236-321 (479)
117 KOG4208 Nucleolar RNA-binding 99.0 1.8E-09 3.9E-14 84.6 7.4 74 200-276 48-126 (214)
118 KOG4661 Hsp27-ERE-TATA-binding 99.0 4.2E-09 9.1E-14 93.7 10.3 80 199-281 403-486 (940)
119 KOG4661 Hsp27-ERE-TATA-binding 98.9 2.3E-09 5.1E-14 95.3 8.0 82 35-119 405-488 (940)
120 KOG4211 Splicing factor hnRNP- 98.9 6.8E-08 1.5E-12 84.9 16.5 76 34-113 102-179 (510)
121 KOG0226 RNA-binding proteins [ 98.9 2.7E-09 5.8E-14 86.0 6.9 162 35-275 96-265 (290)
122 KOG1365 RNA-binding protein Fu 98.9 2.3E-09 4.9E-14 91.1 5.3 180 36-267 162-352 (508)
123 PF04059 RRM_2: RNA recognitio 98.9 2.1E-08 4.6E-13 70.6 8.7 78 202-279 2-86 (97)
124 KOG0151 Predicted splicing reg 98.9 5.4E-09 1.2E-13 95.2 7.1 79 198-279 171-256 (877)
125 KOG4660 Protein Mei2, essentia 98.8 2.7E-09 5.8E-14 94.9 4.4 72 198-273 72-143 (549)
126 KOG0116 RasGAP SH3 binding pro 98.8 2.7E-08 5.8E-13 88.1 9.7 84 32-119 285-370 (419)
127 KOG0533 RRM motif-containing p 98.8 2.1E-08 4.6E-13 82.3 8.2 75 201-278 83-160 (243)
128 KOG4208 Nucleolar RNA-binding 98.8 2.5E-08 5.5E-13 78.2 7.9 84 30-116 44-130 (214)
129 KOG4676 Splicing factor, argin 98.8 8.9E-09 1.9E-13 87.8 4.8 198 36-265 8-214 (479)
130 KOG4210 Nuclear localization s 98.7 1.5E-08 3.2E-13 86.2 6.0 170 33-280 86-264 (285)
131 KOG0151 Predicted splicing reg 98.7 3.3E-08 7.2E-13 90.2 8.1 87 26-116 165-257 (877)
132 KOG0533 RRM motif-containing p 98.7 5.9E-08 1.3E-12 79.7 8.7 85 35-122 83-168 (243)
133 KOG2193 IGF-II mRNA-binding pr 98.7 3.3E-09 7.1E-14 91.2 -0.8 149 36-276 2-153 (584)
134 PF11608 Limkain-b1: Limkain b 98.6 1.9E-07 4.2E-12 62.7 7.7 69 202-279 3-76 (90)
135 KOG0106 Alternative splicing f 98.6 2.7E-08 5.8E-13 80.0 4.1 71 203-280 3-73 (216)
136 KOG0128 RNA-binding protein SA 98.6 2.9E-09 6.2E-14 98.9 -2.0 137 35-276 667-811 (881)
137 KOG0116 RasGAP SH3 binding pro 98.6 1E-07 2.3E-12 84.4 6.9 75 201-279 288-366 (419)
138 KOG4454 RNA binding protein (R 98.6 2.1E-08 4.6E-13 79.2 1.7 74 201-277 9-84 (267)
139 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.3E-12 77.4 6.6 78 199-280 99-180 (231)
140 PF08777 RRM_3: RNA binding mo 98.5 2.1E-07 4.7E-12 67.1 6.2 59 202-262 2-60 (105)
141 KOG4307 RNA binding protein RB 98.5 1.1E-05 2.4E-10 74.0 18.0 73 201-276 867-943 (944)
142 KOG1548 Transcription elongati 98.5 3.4E-07 7.4E-12 77.2 7.5 76 201-279 134-220 (382)
143 PF04059 RRM_2: RNA recognitio 98.5 1.3E-06 2.8E-11 61.6 9.2 81 36-116 2-87 (97)
144 KOG4205 RNA-binding protein mu 98.5 2.2E-07 4.7E-12 79.4 5.3 82 34-119 96-179 (311)
145 PF11608 Limkain-b1: Limkain b 98.3 5.1E-06 1.1E-10 55.9 7.7 70 36-116 3-77 (90)
146 KOG0226 RNA-binding proteins [ 98.3 9.4E-07 2E-11 71.6 4.4 75 36-113 191-267 (290)
147 KOG4209 Splicing factor RNPS1, 98.2 3.8E-06 8.3E-11 69.2 6.6 84 32-119 98-183 (231)
148 KOG4307 RNA binding protein RB 98.2 1.7E-05 3.7E-10 72.8 10.5 194 34-275 310-509 (944)
149 PF08777 RRM_3: RNA binding mo 98.1 9E-06 1.9E-10 58.6 6.2 57 36-96 2-58 (105)
150 KOG1365 RNA-binding protein Fu 97.9 0.0003 6.6E-09 60.5 12.3 160 30-258 55-225 (508)
151 PF14605 Nup35_RRM_2: Nup53/35 97.8 4E-05 8.8E-10 47.9 4.8 52 202-256 2-53 (53)
152 COG5175 MOT2 Transcriptional r 97.8 3.9E-05 8.5E-10 64.8 5.8 76 201-279 114-202 (480)
153 KOG3152 TBP-binding protein, a 97.8 1.7E-05 3.7E-10 64.5 3.4 67 201-267 74-156 (278)
154 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.3E-05 1.6E-09 46.7 5.3 52 36-92 2-53 (53)
155 KOG2416 Acinus (induces apopto 97.8 3.9E-05 8.5E-10 69.3 5.3 80 197-278 440-520 (718)
156 PF08952 DUF1866: Domain of un 97.7 0.00012 2.6E-09 55.1 6.8 74 196-277 22-104 (146)
157 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00012 2.7E-09 51.9 6.3 79 201-283 6-95 (100)
158 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.7E-09 61.8 5.7 76 36-114 115-201 (480)
159 PF08675 RNA_bind: RNA binding 97.6 0.00055 1.2E-08 46.2 7.4 56 35-97 9-64 (87)
160 PF15023 DUF4523: Protein of u 97.6 0.00064 1.4E-08 50.6 8.1 82 27-117 78-163 (166)
161 KOG2314 Translation initiation 97.5 0.00013 2.9E-09 65.6 5.3 73 201-275 58-139 (698)
162 KOG1855 Predicted RNA-binding 97.5 0.00012 2.6E-09 63.8 4.6 66 198-263 228-310 (484)
163 KOG0112 Large RNA-binding prot 97.5 0.00018 3.9E-09 68.1 5.8 87 26-117 446-532 (975)
164 KOG1996 mRNA splicing factor [ 97.5 0.00034 7.4E-09 58.1 6.3 74 201-277 281-364 (378)
165 KOG1855 Predicted RNA-binding 97.5 0.00016 3.5E-09 63.0 4.6 64 33-96 229-307 (484)
166 KOG1995 Conserved Zn-finger pr 97.4 0.00024 5.2E-09 60.8 5.0 80 198-280 63-154 (351)
167 KOG2416 Acinus (induces apopto 97.4 0.00034 7.5E-09 63.4 6.0 82 32-117 441-523 (718)
168 KOG0115 RNA-binding protein p5 97.3 0.0016 3.5E-08 53.3 8.8 80 36-116 32-114 (275)
169 KOG0129 Predicted RNA-binding 97.3 0.00079 1.7E-08 60.3 7.5 66 29-94 364-432 (520)
170 KOG4210 Nuclear localization s 97.3 0.00018 4E-09 61.4 3.2 85 31-119 180-267 (285)
171 KOG2193 IGF-II mRNA-binding pr 97.2 0.00031 6.7E-09 61.2 3.8 74 202-280 2-76 (584)
172 KOG2202 U2 snRNP splicing fact 97.2 0.00016 3.4E-09 59.1 1.9 59 216-277 83-145 (260)
173 KOG1995 Conserved Zn-finger pr 97.2 0.00047 1E-08 59.0 4.8 84 31-117 62-155 (351)
174 PF15023 DUF4523: Protein of u 97.2 0.0022 4.8E-08 47.8 7.7 80 195-281 80-163 (166)
175 KOG3152 TBP-binding protein, a 97.2 0.00021 4.5E-09 58.3 2.5 68 34-101 73-154 (278)
176 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0034 7.5E-08 44.6 7.6 71 35-113 6-89 (100)
177 PF10309 DUF2414: Protein of u 97.1 0.0034 7.4E-08 40.2 6.8 55 201-259 5-62 (62)
178 KOG4574 RNA-binding protein (c 97.1 0.00056 1.2E-08 64.5 4.5 78 199-279 296-373 (1007)
179 PF07576 BRAP2: BRCA1-associat 97.1 0.017 3.6E-07 41.9 11.2 84 30-113 8-92 (110)
180 PF08675 RNA_bind: RNA binding 97.1 0.0024 5.2E-08 43.2 5.9 56 201-261 9-64 (87)
181 KOG0128 RNA-binding protein SA 97.1 3.4E-05 7.4E-10 72.5 -4.0 157 36-265 572-735 (881)
182 PF08952 DUF1866: Domain of un 96.9 0.0043 9.4E-08 46.9 7.1 73 32-114 24-105 (146)
183 KOG1996 mRNA splicing factor [ 96.9 0.0028 6E-08 52.9 6.2 62 49-113 300-364 (378)
184 KOG4849 mRNA cleavage factor I 96.8 0.00081 1.7E-08 57.3 2.8 81 201-283 80-166 (498)
185 KOG2314 Translation initiation 96.8 0.0057 1.2E-07 55.5 8.1 74 36-111 59-139 (698)
186 KOG2202 U2 snRNP splicing fact 96.8 0.00063 1.4E-08 55.7 2.0 60 51-114 84-146 (260)
187 KOG0115 RNA-binding protein p5 96.7 0.0064 1.4E-07 49.9 7.1 63 203-265 33-98 (275)
188 PF07576 BRAP2: BRCA1-associat 96.7 0.059 1.3E-06 39.1 11.4 76 200-275 12-90 (110)
189 KOG2253 U1 snRNP complex, subu 96.7 0.0026 5.5E-08 58.8 5.1 100 1-112 8-107 (668)
190 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0032 6.9E-08 49.9 4.8 77 201-277 7-95 (176)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0027 5.7E-08 50.4 4.2 83 33-115 5-97 (176)
192 KOG2068 MOT2 transcription fac 96.3 0.0015 3.2E-08 55.7 1.1 76 201-279 77-162 (327)
193 PF10309 DUF2414: Protein of u 96.2 0.03 6.4E-07 35.9 6.5 53 36-95 6-62 (62)
194 KOG4676 Splicing factor, argin 96.1 0.0075 1.6E-07 52.3 4.2 66 201-267 7-79 (479)
195 PF03880 DbpA: DbpA RNA bindin 96.0 0.041 9E-07 36.9 6.9 66 203-277 2-74 (74)
196 PF04847 Calcipressin: Calcipr 95.8 0.021 4.6E-07 45.5 5.1 60 214-278 8-69 (184)
197 KOG4849 mRNA cleavage factor I 95.7 0.012 2.5E-07 50.4 3.7 72 36-110 81-156 (498)
198 PF04847 Calcipressin: Calcipr 94.4 0.16 3.4E-06 40.5 6.6 62 48-116 8-71 (184)
199 PF11767 SET_assoc: Histone ly 94.2 0.23 5.1E-06 32.3 5.9 55 46-110 11-65 (66)
200 KOG0804 Cytoplasmic Zn-finger 94.1 0.5 1.1E-05 42.2 9.5 69 199-267 72-143 (493)
201 KOG2068 MOT2 transcription fac 94.0 0.018 4E-07 49.2 0.6 76 36-114 78-161 (327)
202 PF03880 DbpA: DbpA RNA bindin 94.0 0.38 8.2E-06 32.2 6.8 58 46-113 12-74 (74)
203 KOG2591 c-Mpl binding protein, 93.6 0.23 5E-06 45.4 6.7 56 201-259 175-232 (684)
204 KOG0804 Cytoplasmic Zn-finger 93.5 0.63 1.4E-05 41.6 9.0 79 35-113 74-153 (493)
205 KOG4574 RNA-binding protein (c 93.5 0.056 1.2E-06 51.6 2.7 75 38-117 301-375 (1007)
206 KOG4285 Mitotic phosphoprotein 92.8 0.16 3.5E-06 42.8 4.2 63 201-267 197-259 (350)
207 PF11767 SET_assoc: Histone ly 92.8 0.41 8.9E-06 31.2 5.2 52 211-267 10-61 (66)
208 KOG2891 Surface glycoprotein [ 91.8 0.062 1.3E-06 44.7 0.6 80 201-280 149-268 (445)
209 KOG2253 U1 snRNP complex, subu 91.3 0.45 9.7E-06 44.5 5.6 67 196-267 35-101 (668)
210 KOG2135 Proteins containing th 91.0 0.15 3.3E-06 45.6 2.2 74 36-117 373-447 (526)
211 KOG2591 c-Mpl binding protein, 90.4 0.83 1.8E-05 42.0 6.3 61 36-101 176-245 (684)
212 KOG4285 Mitotic phosphoprotein 90.2 0.68 1.5E-05 39.2 5.2 58 38-101 200-257 (350)
213 PF10567 Nab6_mRNP_bdg: RNA-re 88.8 14 0.0003 31.5 13.9 81 34-115 14-107 (309)
214 KOG2318 Uncharacterized conser 88.1 3.1 6.7E-05 38.6 8.2 77 199-276 172-304 (650)
215 PF07292 NID: Nmi/IFP 35 domai 86.4 1.3 2.8E-05 30.7 3.8 24 200-223 51-74 (88)
216 KOG2135 Proteins containing th 85.2 0.5 1.1E-05 42.5 1.7 72 201-278 372-444 (526)
217 KOG4483 Uncharacterized conser 82.6 2.4 5.2E-05 37.5 4.7 56 35-94 391-446 (528)
218 KOG2318 Uncharacterized conser 80.8 6 0.00013 36.8 6.7 82 32-114 171-306 (650)
219 KOG4410 5-formyltetrahydrofola 76.0 8.3 0.00018 32.6 5.7 48 36-86 331-378 (396)
220 PF03468 XS: XS domain; Inter 75.3 4.9 0.00011 29.4 3.8 39 48-87 30-68 (116)
221 KOG2891 Surface glycoprotein [ 75.1 1.1 2.3E-05 37.6 0.3 66 35-100 149-247 (445)
222 KOG4019 Calcineurin-mediated s 72.5 3 6.5E-05 32.8 2.2 74 201-278 10-88 (193)
223 COG5178 PRP8 U5 snRNP spliceos 71.5 3.4 7.4E-05 41.7 2.8 34 35-68 72-105 (2365)
224 KOG2295 C2H2 Zn-finger protein 70.7 0.74 1.6E-05 42.3 -1.7 65 201-265 231-299 (648)
225 KOG1546 Metacaspase involved i 70.5 46 0.001 29.0 9.0 74 36-117 65-150 (362)
226 PF00403 HMA: Heavy-metal-asso 69.6 21 0.00045 22.3 5.5 55 203-259 1-59 (62)
227 KOG1924 RhoA GTPase effector D 68.8 6.5 0.00014 38.1 3.9 13 39-51 606-618 (1102)
228 KOG4008 rRNA processing protei 68.2 3.1 6.8E-05 34.1 1.5 37 32-68 37-73 (261)
229 PF14111 DUF4283: Domain of un 64.3 7 0.00015 29.7 2.8 34 203-236 106-140 (153)
230 PF10567 Nab6_mRNP_bdg: RNA-re 64.2 13 0.00029 31.6 4.5 77 199-278 13-106 (309)
231 PF03468 XS: XS domain; Inter 61.8 8.2 0.00018 28.3 2.6 48 203-250 10-67 (116)
232 KOG4410 5-formyltetrahydrofola 61.5 1E+02 0.0022 26.3 9.2 48 201-249 330-377 (396)
233 PF15513 DUF4651: Domain of un 59.7 26 0.00055 22.5 4.2 19 50-68 9-27 (62)
234 KOG1924 RhoA GTPase effector D 58.9 13 0.00028 36.1 4.0 8 38-45 590-597 (1102)
235 PF14893 PNMA: PNMA 58.8 9.1 0.0002 33.6 2.8 79 32-119 15-100 (331)
236 KOG1295 Nonsense-mediated deca 58.7 15 0.00033 32.5 4.1 71 35-105 7-82 (376)
237 KOG4483 Uncharacterized conser 57.6 23 0.0005 31.6 5.0 55 201-258 391-446 (528)
238 PF14026 DUF4242: Protein of u 57.1 56 0.0012 21.9 8.6 62 38-100 3-71 (77)
239 COG5638 Uncharacterized conser 56.3 52 0.0011 29.5 6.9 78 198-276 143-294 (622)
240 PRK14548 50S ribosomal protein 54.3 51 0.0011 22.6 5.3 56 204-259 23-81 (84)
241 cd04889 ACT_PDH-BS-like C-term 53.8 48 0.001 20.1 5.2 42 215-256 12-55 (56)
242 PF08544 GHMP_kinases_C: GHMP 52.9 57 0.0012 21.6 5.6 44 216-260 37-80 (85)
243 CHL00123 rps6 ribosomal protei 49.1 52 0.0011 23.1 4.9 55 202-258 9-81 (97)
244 PF07292 NID: Nmi/IFP 35 domai 48.6 9.4 0.0002 26.4 1.0 26 32-57 49-74 (88)
245 PF02714 DUF221: Domain of unk 47.6 24 0.00053 30.7 3.8 40 78-122 1-40 (325)
246 PRK14548 50S ribosomal protein 46.3 95 0.0021 21.3 5.7 55 39-94 24-80 (84)
247 PF11411 DNA_ligase_IV: DNA li 44.3 17 0.00038 20.4 1.4 15 46-60 20-34 (36)
248 PF08544 GHMP_kinases_C: GHMP 44.2 90 0.002 20.6 5.5 43 50-95 37-79 (85)
249 KOG4019 Calcineurin-mediated s 44.0 23 0.0005 28.0 2.6 75 37-118 12-92 (193)
250 KOG4213 RNA-binding protein La 43.6 30 0.00065 27.3 3.2 51 201-258 111-169 (205)
251 PF14893 PNMA: PNMA 41.6 32 0.0007 30.2 3.5 51 198-248 15-71 (331)
252 PF09707 Cas_Cas2CT1978: CRISP 41.5 71 0.0015 22.0 4.5 47 36-83 26-72 (86)
253 PRK11901 hypothetical protein; 40.6 2E+02 0.0044 25.2 8.0 60 35-98 245-307 (327)
254 PF11823 DUF3343: Protein of u 40.0 35 0.00076 22.4 2.8 26 240-265 2-27 (73)
255 PF14026 DUF4242: Protein of u 39.7 1.1E+02 0.0025 20.4 8.5 61 204-265 3-72 (77)
256 cd04879 ACT_3PGDH-like ACT_3PG 38.6 96 0.0021 19.1 4.8 56 204-260 2-60 (71)
257 COG5193 LHP1 La protein, small 37.9 17 0.00037 32.4 1.2 57 201-257 174-244 (438)
258 COG0030 KsgA Dimethyladenosine 37.8 46 0.001 28.2 3.7 33 36-68 96-128 (259)
259 KOG4365 Uncharacterized conser 37.0 6.2 0.00013 35.5 -1.6 77 36-116 4-82 (572)
260 KOG2295 C2H2 Zn-finger protein 36.8 6.1 0.00013 36.6 -1.7 67 35-101 231-299 (648)
261 PRK11230 glycolate oxidase sub 35.8 1.4E+02 0.003 28.0 6.9 64 201-264 189-259 (499)
262 PF15053 Njmu-R1: Mjmu-R1-like 35.4 1.1E+02 0.0025 26.8 5.7 49 32-81 34-93 (353)
263 PF08734 GYD: GYD domain; Int 35.2 1.5E+02 0.0033 20.4 5.5 45 215-259 22-67 (91)
264 cd04904 ACT_AAAH ACT domain of 34.7 1.1E+02 0.0024 20.0 4.6 47 215-261 14-65 (74)
265 cd01201 Neurobeachin Neurobeac 33.7 1.8E+02 0.004 21.0 5.7 56 38-96 49-106 (108)
266 cd04908 ACT_Bt0572_1 N-termina 33.7 1.2E+02 0.0027 19.0 7.7 44 214-257 14-58 (66)
267 KOG4365 Uncharacterized conser 33.6 6.3 0.00014 35.4 -2.1 74 202-279 4-81 (572)
268 PRK10629 EnvZ/OmpR regulon mod 33.4 2E+02 0.0044 21.4 7.5 71 201-278 35-109 (127)
269 PF15407 Spo7_2_N: Sporulation 33.3 19 0.00041 23.5 0.6 20 32-51 24-43 (67)
270 COG0150 PurM Phosphoribosylami 31.8 16 0.00035 31.9 0.1 50 213-262 273-322 (345)
271 PRK11558 putative ssRNA endonu 31.5 1E+02 0.0023 21.7 4.1 48 36-84 28-75 (97)
272 PF08156 NOP5NT: NOP5NT (NUC12 30.7 33 0.00071 22.3 1.4 39 216-260 27-65 (67)
273 KOG4008 rRNA processing protei 30.5 40 0.00086 27.9 2.1 34 200-233 39-72 (261)
274 PRK11901 hypothetical protein; 29.0 1.6E+02 0.0035 25.8 5.6 48 212-260 253-305 (327)
275 COG3495 Uncharacterized protei 28.4 54 0.0012 24.8 2.3 42 7-62 96-137 (166)
276 cd06401 PB1_TFG The PB1 domain 28.0 1.8E+02 0.0039 19.8 4.6 44 47-93 21-69 (81)
277 KOG1295 Nonsense-mediated deca 27.7 84 0.0018 28.0 3.8 66 202-267 8-80 (376)
278 PF00398 RrnaAD: Ribosomal RNA 25.9 53 0.0012 27.7 2.3 28 35-62 97-126 (262)
279 PF01698 FLO_LFY: Floricaula / 25.7 23 0.0005 31.5 0.0 11 51-61 50-60 (386)
280 COG2608 CopZ Copper chaperone 25.3 2E+02 0.0043 18.7 5.1 46 201-248 3-48 (71)
281 TIGR03636 L23_arch archaeal ri 24.5 2.3E+02 0.0049 19.0 4.9 56 204-259 16-74 (77)
282 PF03439 Spt5-NGN: Early trans 24.0 1.3E+02 0.0029 20.3 3.6 36 228-264 34-69 (84)
283 PF12829 Mhr1: Transcriptional 23.5 1.9E+02 0.0041 20.2 4.2 58 201-260 14-72 (91)
284 KOG2187 tRNA uracil-5-methyltr 23.3 66 0.0014 30.0 2.4 37 240-279 64-100 (534)
285 TIGR01873 cas_CT1978 CRISPR-as 23.0 2.1E+02 0.0045 19.8 4.3 47 36-84 26-74 (87)
286 PF15471 TMEM171: Transmembran 22.6 1.1E+02 0.0025 25.9 3.4 10 3-12 220-229 (319)
287 PRK00274 ksgA 16S ribosomal RN 22.1 1.2E+02 0.0025 25.8 3.6 23 36-58 106-128 (272)
288 KOG1134 Uncharacterized conser 22.0 1.2E+02 0.0026 30.0 4.0 38 237-279 303-340 (728)
289 cd04903 ACT_LSD C-terminal ACT 21.9 2E+02 0.0044 17.6 6.8 45 214-259 12-59 (71)
290 PF13721 SecD-TM1: SecD export 21.5 2.5E+02 0.0053 19.9 4.6 43 216-262 49-92 (101)
291 cd04909 ACT_PDH-BS C-terminal 20.9 2.3E+02 0.0049 17.7 6.6 46 214-259 14-62 (69)
292 TIGR00755 ksgA dimethyladenosi 20.3 1.3E+02 0.0028 25.1 3.5 25 37-61 96-120 (253)
293 cd04882 ACT_Bt0572_2 C-termina 20.2 2.2E+02 0.0048 17.3 5.1 44 215-258 13-59 (65)
No 1
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=225.34 Aligned_cols=272 Identities=54% Similarity=0.833 Sum_probs=187.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee---E
Q 023320 1 MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---V 77 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~---~ 77 (284)
|+.|+| |.|.|..|.++...+++.-.........|||||.+||.++.-.+|+.+|..|-.-+.+.+++.++++++ +
T Consensus 1 M~~p~P-p~~s~~~~es~hsvs~~~~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pv 79 (284)
T KOG1457|consen 1 MAYPQP-PFYSYQLHESPHSVSPQLPLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPV 79 (284)
T ss_pred CCCCCC-CccccccccCCCCCCcccccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccce
Confidence 566655 777777777765555554333444667899999999999999999999999999999999998888765 9
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeecCCCCCcCCCCC-----ceeeecccccchhccccCCCCCCCCC
Q 023320 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRKPGSG-----AYVVIDKRTKTEANVQESSSADGDSD 152 (284)
Q Consensus 78 aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (284)
|||+|.+..+|..|+.+|||.+|++..+..|+|++++++....+....+ .....+......++........+...
T Consensus 80 aFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~ 159 (284)
T KOG1457|consen 80 AFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSD 159 (284)
T ss_pred EEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccC
Confidence 9999999999999999999999998899999999999998776653333 23333322222221111111111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCC-CC---CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCc
Q 023320 153 TDEASPVRNIDSADKGDFVTTQSERATDSGNAVA-PI---NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGF 228 (284)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v 228 (284)
+.+............+ ....+.....+..-.+ +. ....+.......|.||||.||..++||++|+.+|+.|.++
T Consensus 160 p~~l~~~~~a~al~~~--~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf 237 (284)
T KOG1457|consen 160 PDELQEPGNADALKEN--DTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGF 237 (284)
T ss_pred ccccCCccccccCCCc--cccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCc
Confidence 1111111111111100 0111100100000001 00 0111111223348999999999999999999999999999
Q ss_pred eEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 229 NMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 229 ~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..+++..+.+.+.|||+|++++.|..||..|+|..|-..|++.|+|+
T Consensus 238 ~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~~drgg~~ie 284 (284)
T KOG1457|consen 238 HILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 284 (284)
T ss_pred eEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceeccccCCCcccC
Confidence 99999998888899999999999999999999999998888888874
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.3e-33 Score=243.72 Aligned_cols=167 Identities=23% Similarity=0.332 Sum_probs=142.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....++|||+|||.++|+++|+++|+.||.|.+|+|+.+...+. .||||+|.+.++|++|++.|+|..+. ++.|+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~---gr~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVR---NKRLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccC---Cceee
Confidence 44568999999999999999999999999999999985533221 29999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
|.|++.....
T Consensus 181 V~~a~p~~~~---------------------------------------------------------------------- 190 (346)
T TIGR01659 181 VSYARPGGES---------------------------------------------------------------------- 190 (346)
T ss_pred eecccccccc----------------------------------------------------------------------
Confidence 9987432100
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
...++|||+|||.++|+++|+++|++||.|+.|+++.+ ..++||||+|.+.++|++||++||+..+.
T Consensus 191 ---------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~ 261 (346)
T TIGR01659 191 ---------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPE 261 (346)
T ss_pred ---------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccC
Confidence 01457999999999999999999999999999998864 34579999999999999999999999998
Q ss_pred CCCCCcEEEEEeeccc
Q 023320 266 SSDRGGMHIEYARSKM 281 (284)
Q Consensus 266 ~~~~~~l~v~~ak~~~ 281 (284)
+. ..+|+|.|++.+.
T Consensus 262 g~-~~~l~V~~a~~~~ 276 (346)
T TIGR01659 262 GG-SQPLTVRLAEEHG 276 (346)
T ss_pred CC-ceeEEEEECCccc
Confidence 64 4589999987653
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=2.2e-32 Score=241.90 Aligned_cols=243 Identities=16% Similarity=0.226 Sum_probs=150.2
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
+..+|||+|||+.+||++|+++|+.||.|.+|+|+.+...+ .+||||+|.+.++|++||+.|+|..+. |+.|+|.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~---g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQ---NKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEEC---CeeEEEE
Confidence 45789999999999999999999999999999998653322 239999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCC---------------------CCCcee----eecccccchh---------------ccccCCCCCCCC
Q 023320 112 LARSNSRKKRKP---------------------GSGAYV----VIDKRTKTEA---------------NVQESSSADGDS 151 (284)
Q Consensus 112 ~a~~~~~~~~~~---------------------~~~~~~----~~~~~~~~~~---------------~~~~~~~~~~~~ 151 (284)
|++......... .-|... ..+......+ ..+...+....+
T Consensus 79 ~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 79 YARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred eecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 987554321110 000000 0000000000 000000000000
Q ss_pred C-----------CCCC-----------C-CCCCCCCCCC------------CCCCCCc---------------CcccCCC
Q 023320 152 D-----------TDEA-----------S-PVRNIDSADK------------GDFVTTQ---------------SERATDS 181 (284)
Q Consensus 152 ~-----------~~~~-----------~-~~~~~~~~~~------------~~~~~~~---------------~~~~~~~ 181 (284)
. .... . .......... ....... .......
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 0 0000 0 0000000000 0000000 0000000
Q ss_pred CCCCCCC-------C----CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEe
Q 023320 182 GNAVAPI-------N----SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADF 246 (284)
Q Consensus 182 ~~~~~~~-------~----~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f 246 (284)
....... . ...........+.+|||+|||+++++++|+++|++||.|.+|+++. +.++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0000000 0 0000001112245799999999999999999999999999999986 44688999999
Q ss_pred CCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecccc
Q 023320 247 EEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 282 (284)
Q Consensus 247 ~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~~ 282 (284)
.+.++|.+||++|||..|.|| .|+|+|+.+|-.
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr---~i~V~~~~~~~~ 351 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNR---VLQVSFKTNKAY 351 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCe---EEEEEEccCCCC
Confidence 999999999999999999988 999999987753
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.3e-31 Score=240.91 Aligned_cols=202 Identities=22% Similarity=0.296 Sum_probs=148.7
Q ss_pred CCCCCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+++.+|||+|||. .+|+++|+++|+.||.|..|++..+.++ ||||+|.+.++|..|+..|||..|. |+.|+|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g---~afV~f~~~~~A~~Ai~~lng~~l~---g~~l~v 345 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKE---TALIEMADPYQAQLALTHLNGVKLF---GKPLRV 345 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CceEEE
Confidence 45789999999998 6999999999999999999999866556 9999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.+++......... +... +... ........ ... .+.. +.
T Consensus 346 ~~s~~~~~~~~~~--~~~~--~~~~----------~~~d~~~~------~~~---------r~~~-----~~-------- 383 (481)
T TIGR01649 346 CPSKQQNVQPPRE--GQLD--DGLT----------SYKDYSSS------RNH---------RFKK-----PG-------- 383 (481)
T ss_pred EEcccccccCCCC--CcCc--CCCc----------ccccccCC------ccc---------cCCC-----cc--------
Confidence 9986654322110 0000 0000 00000000 000 0000 00
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCC--ceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPG--FNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~--v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
........+++++|||+|||.++|+++|+++|+.||. +..+++..+ ..+++|||+|.+.++|.+||..|||..|.+
T Consensus 384 ~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~ 463 (481)
T TIGR01649 384 SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNE 463 (481)
T ss_pred cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCC
Confidence 0001112356899999999999999999999999998 888888653 235799999999999999999999999997
Q ss_pred CCCC---cEEEEEeeccc
Q 023320 267 SDRG---GMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~---~l~v~~ak~~~ 281 (284)
+.+. .|+|+||+.++
T Consensus 464 ~~~~~~~~lkv~fs~~~~ 481 (481)
T TIGR01649 464 PNGSAPYHLKVSFSTSRI 481 (481)
T ss_pred CCCCccceEEEEeccCCC
Confidence 6111 49999999764
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.4e-32 Score=230.18 Aligned_cols=243 Identities=23% Similarity=0.237 Sum_probs=161.9
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCC
Q 023320 21 VPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGV 98 (284)
Q Consensus 21 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~ 98 (284)
-+||+.++.+..+..+-||||.||.++.||+|.-+|++.|+|-+++|+++ +..+++||||+|++.+.|++|++.||+.
T Consensus 69 ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~ 148 (506)
T KOG0117|consen 69 GGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNY 148 (506)
T ss_pred CCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCc
Confidence 34444566666677899999999999999999999999999999999976 1112229999999999999999999999
Q ss_pred eeCCCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhc-------------------cccCCCCCCCCCCCCCCCC
Q 023320 99 KFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEAN-------------------VQESSSADGDSDTDEASPV 159 (284)
Q Consensus 99 ~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~ 159 (284)
+|. .|+.|.|..+..+++.-... ..+.+...+- ...+..+.++....-..+.
T Consensus 149 Eir--~GK~igvc~Svan~RLFiG~-------IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~ 219 (506)
T KOG0117|consen 149 EIR--PGKLLGVCVSVANCRLFIGN-------IPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHR 219 (506)
T ss_pred ccc--CCCEeEEEEeeecceeEecc-------CCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecch
Confidence 997 68999999888776543221 0011111000 1111111111111111110
Q ss_pred CCCCCCCCCCCCCCcCcccCCCCCCCCCC-CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCC
Q 023320 160 RNIDSADKGDFVTTQSERATDSGNAVAPI-NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG 238 (284)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~ 238 (284)
...-+......+..+ ........-.+ .......+....-++|||+||+.++|+|.|+.+|+.||.|++|+..++
T Consensus 220 ~Aa~aRrKl~~g~~k---lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-- 294 (506)
T KOG0117|consen 220 AAAMARRKLMPGKIK---LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-- 294 (506)
T ss_pred hHHHHHhhccCCcee---ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--
Confidence 000000000000000 01111111111 111111123334789999999999999999999999999999998865
Q ss_pred cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecccc
Q 023320 239 MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 282 (284)
Q Consensus 239 ~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~~ 282 (284)
||||.|.+.++|.+||+.|||++|+|. .|.|++||....
T Consensus 295 --YaFVHf~eR~davkAm~~~ngkeldG~---~iEvtLAKP~~k 333 (506)
T KOG0117|consen 295 --YAFVHFAEREDAVKAMKETNGKELDGS---PIEVTLAKPVDK 333 (506)
T ss_pred --eeEEeecchHHHHHHHHHhcCceecCc---eEEEEecCChhh
Confidence 799999999999999999999999977 999999986543
No 6
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=4.9e-31 Score=240.67 Aligned_cols=175 Identities=12% Similarity=0.225 Sum_probs=142.0
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++|||+|||+.+++++|+++|+.||.|.+|++..+...+ ++||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~---GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe---cceeee
Confidence 456899999999999999999999999999999998653222 229999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.+.......... ...
T Consensus 182 ~rp~~~p~a~~~----------------------~~~------------------------------------------- 196 (612)
T TIGR01645 182 GRPSNMPQAQPI----------------------IDM------------------------------------------- 196 (612)
T ss_pred cccccccccccc----------------------ccc-------------------------------------------
Confidence 843211000000 000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
........++|||+||++++++++|+++|+.||.|.++++..+ .++|||||+|.+.++|.+|++.|||..|+|
T Consensus 197 ---~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG 273 (612)
T TIGR01645 197 ---VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG 273 (612)
T ss_pred ---ccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 0000012568999999999999999999999999999999873 467899999999999999999999999998
Q ss_pred CCCCcEEEEEeeccc
Q 023320 267 SDRGGMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~ 281 (284)
+ .|+|.++..+.
T Consensus 274 r---~LrV~kAi~pP 285 (612)
T TIGR01645 274 Q---YLRVGKCVTPP 285 (612)
T ss_pred e---EEEEEecCCCc
Confidence 8 99999987643
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.6e-30 Score=237.78 Aligned_cols=172 Identities=19% Similarity=0.226 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh--CCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL--NGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l--~g~~~~~~~g~~l~v~ 111 (284)
|+++|||+|||.++||++|+++|+.||.|..|.+. .+++ ||||+|.+.++|++|+..+ ++..+. |+.|+|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~-~~k~---~afVef~~~e~A~~Ai~~~~~~~~~l~---g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMML-PGKR---QALVEFEDEESAKACVNFATSVPIYIR---GQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEE-CCCC---EEEEEeCchHHHHHHHHHhhcCCceEc---CeEEEEE
Confidence 58999999999999999999999999999999887 4556 9999999999999999874 788888 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
|+......... .. ...
T Consensus 74 ~s~~~~~~~~~--~~-------------------~~~------------------------------------------- 89 (481)
T TIGR01649 74 YSTSQEIKRDG--NS-------------------DFD------------------------------------------- 89 (481)
T ss_pred ecCCcccccCC--CC-------------------ccc-------------------------------------------
Confidence 99654221100 00 000
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~ 271 (284)
........+|||+||++.+|+++|+++|+.||.|.+|.+.++.++++|||+|.+.++|.+|++.|||..|.++ ++.
T Consensus 90 ---~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~ 165 (481)
T TIGR01649 90 ---SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCT 165 (481)
T ss_pred ---CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceE
Confidence 0000113479999999999999999999999999999998877667999999999999999999999999854 468
Q ss_pred EEEEEeecc
Q 023320 272 MHIEYARSK 280 (284)
Q Consensus 272 l~v~~ak~~ 280 (284)
|+|+|+|..
T Consensus 166 l~v~~sk~~ 174 (481)
T TIGR01649 166 LKIEYAKPT 174 (481)
T ss_pred EEEEEecCC
Confidence 999999853
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=2e-30 Score=207.75 Aligned_cols=178 Identities=16% Similarity=0.257 Sum_probs=148.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.+.+--+||+-|...++.++|++.|.+||+|.+++|+.+....+. ||||.|.+.++|++||..|||+-|. +|.|+
T Consensus 59 ~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG---~R~IR 135 (321)
T KOG0148|consen 59 SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG---RRTIR 135 (321)
T ss_pred cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeec---cceee
Confidence 334567999999999999999999999999999999955322222 9999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
.+|+..+...... ..-++. +
T Consensus 136 TNWATRKp~e~n~-~~ltfd---------e-------------------------------------------------- 155 (321)
T KOG0148|consen 136 TNWATRKPSEMNG-KPLTFD---------E-------------------------------------------------- 155 (321)
T ss_pred ccccccCccccCC-CCccHH---------H--------------------------------------------------
Confidence 9999888633222 000000 0
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
.-....+.++++|++|++..+||++|++.|++||.|.+|++.+.+ +|+||+|++-|+|.+||..|||.+|+|.
T Consensus 156 ---V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GYaFVrF~tkEaAahAIv~mNntei~G~-- 228 (321)
T KOG0148|consen 156 ---VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GYAFVRFETKEAAAHAIVQMNNTEIGGQ-- 228 (321)
T ss_pred ---HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ceEEEEecchhhHHHHHHHhcCceeCce--
Confidence 001112348999999999999999999999999999999999987 8999999999999999999999999966
Q ss_pred CcEEEEEeecc
Q 023320 270 GGMHIEYARSK 280 (284)
Q Consensus 270 ~~l~v~~ak~~ 280 (284)
.++..|.|..
T Consensus 229 -~VkCsWGKe~ 238 (321)
T KOG0148|consen 229 -LVRCSWGKEG 238 (321)
T ss_pred -EEEEeccccC
Confidence 9999999864
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=3.5e-29 Score=228.29 Aligned_cols=235 Identities=20% Similarity=0.220 Sum_probs=145.8
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
.......+|||+|||.+++|++|+++|++||.|.+|+|+++..+. ..||||+|.+.++|++||+.||+..+. .|+.|
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~--~Gr~l 130 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIR--PGRLL 130 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeec--CCccc
Confidence 334456899999999999999999999999999999998652222 129999999999999999999999884 36777
Q ss_pred EEEEeecCCCCCcCCCC-----------------Cce-eeecccccchhccccCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGS-----------------GAY-VVIDKRTKTEANVQESSSADGDSDTDEAS-PVRNIDSADKGD 169 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 169 (284)
.+.++......-..... +.. +..... .......+..++..+....+.. +........ ..
T Consensus 131 ~V~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~-~~~kgKnRGFAFVeF~s~edAa~AirkL~~gk-i~ 208 (578)
T TIGR01648 131 GVCISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHS-AADKKKNRGFAFVEYESHRAAAMARRKLMPGR-IQ 208 (578)
T ss_pred cccccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEecc-ccccCccCceEEEEcCCHHHHHHHHHHhhccc-eE
Confidence 77655432211111000 000 000000 0000001111222111111000 000000000 00
Q ss_pred CCCCcCcccCCCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccC--CCceEEEEEeeCCcCeEEEEeC
Q 023320 170 FVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVY--PGFNMLKMRARGGMPVAFADFE 247 (284)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~~~afV~f~ 247 (284)
+.+..- ... ................++|||+||+.++|+++|+++|+.| |.|++|++++ +||||+|.
T Consensus 209 l~Gr~I-~Vd------wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~ 277 (578)
T TIGR01648 209 LWGHVI-AVD------WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFE 277 (578)
T ss_pred ecCceE-EEE------eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeC
Confidence 000000 000 0000000011222346899999999999999999999999 9999998764 48999999
Q ss_pred CHHHHHHHHHHhCCCccCCCCCCcEEEEEeecccc
Q 023320 248 EVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 282 (284)
Q Consensus 248 ~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~~ 282 (284)
+.++|.+|+++|||..|.++ .|+|+||+.+.+
T Consensus 278 s~e~A~kAi~~lnG~~i~Gr---~I~V~~Akp~~~ 309 (578)
T TIGR01648 278 DREDAVKAMDELNGKELEGS---EIEVTLAKPVDK 309 (578)
T ss_pred CHHHHHHHHHHhCCCEECCE---EEEEEEccCCCc
Confidence 99999999999999999988 999999987543
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.8e-29 Score=229.44 Aligned_cols=174 Identities=21% Similarity=0.334 Sum_probs=141.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||..+++++|+++|+.||.|..|+++.+..++ ++||||+|.+.++|.+||. |+|..+. |++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~---g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLL---GRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEEC---CeeeE
Confidence 4557899999999999999999999999999999998643222 2399999999999999996 8999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
|.++......... . ...
T Consensus 162 v~~~~~~~~~~~~-----------------~-----~~~----------------------------------------- 178 (457)
T TIGR01622 162 VQSSQAEKNRAAK-----------------A-----ATH----------------------------------------- 178 (457)
T ss_pred Eeecchhhhhhhh-----------------c-----ccc-----------------------------------------
Confidence 9865332111000 0 000
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.....+..++|||+|||..+|+++|+++|+.||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.
T Consensus 179 ----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~ 254 (457)
T TIGR01622 179 ----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA 254 (457)
T ss_pred ----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC
Confidence 0000112679999999999999999999999999999998863 45689999999999999999999999999
Q ss_pred CCCCCcEEEEEeec
Q 023320 266 SSDRGGMHIEYARS 279 (284)
Q Consensus 266 ~~~~~~l~v~~ak~ 279 (284)
|+ .|+|.|+.+
T Consensus 255 g~---~i~v~~a~~ 265 (457)
T TIGR01622 255 GR---PIKVGYAQD 265 (457)
T ss_pred CE---EEEEEEccC
Confidence 77 999999864
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=5.7e-29 Score=232.55 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=138.3
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
+|||+|||.++||++|+++|+.||.|.+|+|..+..++ .+||||+|.+.++|++|++.+++..+. |++|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~---gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLG---GKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeeEEeeccc
Confidence 69999999999999999999999999999998654322 239999999999999999999999998 9999999875
Q ss_pred cCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCC
Q 023320 115 SNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPY 194 (284)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (284)
.......
T Consensus 79 ~~~~~~~------------------------------------------------------------------------- 85 (562)
T TIGR01628 79 RDPSLRR------------------------------------------------------------------------- 85 (562)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 3211000
Q ss_pred CCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc
Q 023320 195 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271 (284)
Q Consensus 195 ~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~ 271 (284)
....+|||+||+.++++++|+++|+.||.|.+|++.. +.+++||||+|.+.++|.+|++.|||..+.++ .
T Consensus 86 ----~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~---~ 158 (562)
T TIGR01628 86 ----SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDK---E 158 (562)
T ss_pred ----cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCc---e
Confidence 0144799999999999999999999999999999876 34678999999999999999999999999988 9
Q ss_pred EEEEEeecc
Q 023320 272 MHIEYARSK 280 (284)
Q Consensus 272 l~v~~ak~~ 280 (284)
|.|...+.+
T Consensus 159 i~v~~~~~~ 167 (562)
T TIGR01628 159 VYVGRFIKK 167 (562)
T ss_pred EEEeccccc
Confidence 988776543
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=3.8e-28 Score=224.79 Aligned_cols=190 Identities=16% Similarity=0.245 Sum_probs=137.4
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcC------------CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRK------------PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~------------G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g 97 (284)
......++|||+|||+.+|+++|+++|+.+ +.|..+.+. ..++ ||||+|.+.++|..|| .|+|
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-~~kg---~afVeF~~~e~A~~Al-~l~g 244 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-KEKN---FAFLEFRTVEEATFAM-ALDS 244 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-CCCC---EEEEEeCCHHHHhhhh-cCCC
Confidence 346677999999999999999999999975 234444443 4455 9999999999999999 5999
Q ss_pred CeeCCCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcc
Q 023320 98 VKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSER 177 (284)
Q Consensus 98 ~~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (284)
..+. |+.|.|............ . ... . . .. ... . ....
T Consensus 245 ~~~~---g~~l~v~r~~~~~~~~~~-~---~~~---~--~-~~----~~~-------------~--------~~~~---- 282 (509)
T TIGR01642 245 IIYS---NVFLKIRRPHDYIPVPQI-T---PEV---S--Q-KN----PDD-------------N--------AKNV---- 282 (509)
T ss_pred eEee---CceeEecCccccCCcccc-C---CCC---C--C-CC----Ccc-------------c--------cccc----
Confidence 9998 999998754332211000 0 000 0 0 00 000 0 0000
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHH
Q 023320 178 ATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQAS 253 (284)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~ 253 (284)
. ............++|||+|||..+|+++|+++|+.||.|..+.++. +.++|||||+|.+.++|.
T Consensus 283 -~----------~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 351 (509)
T TIGR01642 283 -E----------KLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTD 351 (509)
T ss_pred -c----------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 0 0000111112467999999999999999999999999999999876 346789999999999999
Q ss_pred HHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 254 IAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 254 ~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
.|++.|||..|.++ .|.|.+|...
T Consensus 352 ~A~~~l~g~~~~~~---~l~v~~a~~~ 375 (509)
T TIGR01642 352 VAIAALNGKDTGDN---KLHVQRACVG 375 (509)
T ss_pred HHHHHcCCCEECCe---EEEEEECccC
Confidence 99999999999987 9999998643
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.8e-28 Score=207.99 Aligned_cols=170 Identities=18% Similarity=0.288 Sum_probs=145.8
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...-+|||+-+|..++|.||+++|++||.|.+|-|+.+...+.. ||||.|.+.++|.+|+..|+++...++.-.+|.+
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 55678999999999999999999999999999988855333322 9999999999999999999888887887889999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.|+.....+..
T Consensus 112 k~Ad~E~er~~--------------------------------------------------------------------- 122 (510)
T KOG0144|consen 112 KYADGERERIV--------------------------------------------------------------------- 122 (510)
T ss_pred cccchhhhccc---------------------------------------------------------------------
Confidence 98865533211
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCc-cCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDST-LPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~-~~~ 266 (284)
..+.|||+-|++.+||.|++++|++||.|++|.|++ +.++|||||+|.+.|.|..||++|||.. +.|
T Consensus 123 ---------~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 123 ---------EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred ---------cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeecc
Confidence 256799999999999999999999999999999988 6678999999999999999999999986 554
Q ss_pred CCCCcEEEEEeeccc
Q 023320 267 SDRGGMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~ 281 (284)
. ..+|-|.||..+.
T Consensus 194 c-s~PLVVkFADtqk 207 (510)
T KOG0144|consen 194 C-SQPLVVKFADTQK 207 (510)
T ss_pred C-CCceEEEecccCC
Confidence 4 5599999996554
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.2e-28 Score=226.74 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=142.9
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCC-CCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQ-SGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~-~g~~l~v 110 (284)
....+|||+|||.++|+++|+++|+.||.|.++.+..+..++ .+||||+|.+.++|.+|++.|+|..+... .|+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 345789999999999999999999999999999888543222 22999999999999999999999998311 2677777
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.++......... ..+.... ...
T Consensus 256 ~~a~~k~er~~~-----------~~~~~~~----~~~------------------------------------------- 277 (562)
T TIGR01628 256 GRAQKRAEREAE-----------LRRKFEE----LQQ------------------------------------------- 277 (562)
T ss_pred ecccChhhhHHH-----------HHhhHHh----hhh-------------------------------------------
Confidence 766544322100 0000000 000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.........+|||+||+..+|+++|+++|+.||.|.+++++. +.+++||||+|.+.++|.+|++.|||..|+|+
T Consensus 278 ---~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk 354 (562)
T TIGR01628 278 ---ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK 354 (562)
T ss_pred ---hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc
Confidence 000011366899999999999999999999999999999877 45678999999999999999999999999988
Q ss_pred CCCcEEEEEeeccc
Q 023320 268 DRGGMHIEYARSKM 281 (284)
Q Consensus 268 ~~~~l~v~~ak~~~ 281 (284)
+|.|.||+.+.
T Consensus 355 ---~l~V~~a~~k~ 365 (562)
T TIGR01628 355 ---PLYVALAQRKE 365 (562)
T ss_pred ---eeEEEeccCcH
Confidence 99999998654
No 15
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=3.4e-28 Score=196.81 Aligned_cols=150 Identities=25% Similarity=0.509 Sum_probs=139.7
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeec
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 115 (284)
-+|||||||..+++.+|+.+|++||.|.+|.|+ |+ ||||+..+...|..||+.|+|+.++ |..|.|+-+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv---KN---YgFVHiEdktaaedairNLhgYtLh---g~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV---KN---YGFVHIEDKTAAEDAIRNLHGYTLH---GVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee---cc---cceEEeecccccHHHHhhcccceec---ceEEEEEeccc
Confidence 369999999999999999999999999999999 88 9999999999999999999999999 99999997665
Q ss_pred CCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCCC
Q 023320 116 NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYE 195 (284)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (284)
++.
T Consensus 74 Ksk----------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 74 KSK----------------------------------------------------------------------------- 76 (346)
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 521
Q ss_pred CCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 196 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..++|+|+||-+.++.+||+..|++||.|++++++++ |+||.|+-.++|..|++.|||+++.|+ +|+|+
T Consensus 77 ----~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq 145 (346)
T KOG0109|consen 77 ----ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQ 145 (346)
T ss_pred ----CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccccc---eeeee
Confidence 2678999999999999999999999999999999977 699999999999999999999999988 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
++-+|.|
T Consensus 146 ~stsrlr 152 (346)
T KOG0109|consen 146 LSTSRLR 152 (346)
T ss_pred eeccccc
Confidence 9988766
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=3.8e-26 Score=208.76 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=145.7
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..++|||+|||..+|+++|+++|+.||.|..|.+..+..++ ++||||+|.+.++|.+|++.|+|..|. |+.|.|.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~---g~~i~v~ 261 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELA---GRPIKVG 261 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEEC---CEEEEEE
Confidence 37899999999999999999999999999999988654332 229999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeeccc--------ccchhccccCCCCCC---CC-CCCCCCCCCCCCCCCCCCCCCCcCcccC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKR--------TKTEANVQESSSADG---DS-DTDEASPVRNIDSADKGDFVTTQSERAT 179 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (284)
|+......... ...+...... ............... .. .+........+......+... ...+..
T Consensus 262 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 338 (457)
T TIGR01622 262 YAQDSTYLLDA--ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIID-PNIPSR 338 (457)
T ss_pred EccCCCccccc--hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccc-cccccc
Confidence 98733221111 0000000000 000000000000000 00 000000000000000000000 000000
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCC----------HHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC
Q 023320 180 --DSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCT----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFE 247 (284)
Q Consensus 180 --~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t----------~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~ 247 (284)
....................+.++|+|.||....+ .+||++.|++||+|+.|.+......|++||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 00000000011111111335688999999965544 368999999999999999987667789999999
Q ss_pred CHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 248 EVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 248 ~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
++++|.+|+++|||..|+|+ .|.++|.-
T Consensus 419 ~~e~A~~A~~~lnGr~f~gr---~i~~~~~~ 446 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGGK---MITAAFVV 446 (457)
T ss_pred CHHHHHHHHHHhcCcccCCe---EEEEEEEc
Confidence 99999999999999999988 99999964
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.5e-27 Score=179.61 Aligned_cols=169 Identities=22% Similarity=0.294 Sum_probs=140.5
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
+.+.-.||||+||+..++++.|+++|-+.|+|..+++..+ ....++||||+|.+.|+|+.|++.||...++ |++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY---grpI 81 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY---GRPI 81 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc---Ccee
Confidence 4566789999999999999999999999999998877732 1112339999999999999999999999999 9999
Q ss_pred EEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (284)
++..+... ..+
T Consensus 82 rv~kas~~---~~n------------------------------------------------------------------ 92 (203)
T KOG0131|consen 82 RVNKASAH---QKN------------------------------------------------------------------ 92 (203)
T ss_pred EEEecccc---ccc------------------------------------------------------------------
Confidence 99976511 000
Q ss_pred CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEE-EEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCc
Q 023320 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML-KMRA----RGGMPVAFADFEEVEQASIAMEGLQDST 263 (284)
Q Consensus 189 ~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v-~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~ 263 (284)
...+..|||+||++.+++..|.++|+.||.+.+. .+++ +.+++||||.|++.|.+.+|+..|||..
T Consensus 93 ---------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 93 ---------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ---------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 0014579999999999999999999999987653 2222 4566799999999999999999999999
Q ss_pred cCCCCCCcEEEEEeeccccC
Q 023320 264 LPSSDRGGMHIEYARSKMRK 283 (284)
Q Consensus 264 ~~~~~~~~l~v~~ak~~~~~ 283 (284)
+..+ +|+|+|++.+..|
T Consensus 164 l~nr---~itv~ya~k~~~k 180 (203)
T KOG0131|consen 164 LCNR---PITVSYAFKKDTK 180 (203)
T ss_pred hcCC---ceEEEEEEecCCC
Confidence 9988 9999999887654
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.8e-26 Score=210.82 Aligned_cols=190 Identities=16% Similarity=0.218 Sum_probs=139.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC--CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||..+|+++|+++|+.||.|..+.+..+... .++||||+|.+.++|..|++.|+|..|. |+.|.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~---~~~l~ 368 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG---DNKLH 368 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 345689999999999999999999999999999988754221 2239999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
|.++............ .+. ..... ... . .
T Consensus 369 v~~a~~~~~~~~~~~~-------------------~~~---~~~~~--~~~-----------~----------------~ 397 (509)
T TIGR01642 369 VQRACVGANQATIDTS-------------------NGM---APVTL--LAK-----------A----------------L 397 (509)
T ss_pred EEECccCCCCCCcccc-------------------ccc---ccccc--ccc-----------c----------------c
Confidence 9998654221111000 000 00000 000 0 0
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCC----------CCHHHHHHHhccCCCceEEEEEee-------CCcCeEEEEeCCHHHH
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPN----------CTEDELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQA 252 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~----------~t~~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A 252 (284)
..........++.+|+|.||... ...++|+++|++||.|..|.+... .+.|+|||+|.++++|
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A 477 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSA 477 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHH
Confidence 00000112235789999999642 123689999999999999998753 2457999999999999
Q ss_pred HHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 253 SIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 253 ~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
++|+++|||..|.|+ .|.|+|.-
T Consensus 478 ~~A~~~lnGr~~~gr---~v~~~~~~ 500 (509)
T TIGR01642 478 EKAMEGMNGRKFNDR---VVVAAFYG 500 (509)
T ss_pred HHHHHHcCCCEECCe---EEEEEEeC
Confidence 999999999999988 99999963
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=176.57 Aligned_cols=242 Identities=19% Similarity=0.294 Sum_probs=158.4
Q ss_pred CCC-CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 33 NGI-NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 33 ~~~-~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++ ..|.|.=||..+|+|||+.+|...|+|++|+++.+.-.++. ||||.|.++++|++|+..|||.++. .+.|+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ---~KTIK 114 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQ---NKTIK 114 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeec---cceEE
Confidence 444 45778889999999999999999999999999955444444 9999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCC----------------------------------------CCCceeeecccccchhccccCCCCC-
Q 023320 110 IELARSNSRKKRKP----------------------------------------GSGAYVVIDKRTKTEANVQESSSAD- 148 (284)
Q Consensus 110 v~~a~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 148 (284)
|.|+++.++..+.. ..-.+...|++.+..+.-....+..
T Consensus 115 VSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 115 VSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred EEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 99999887665441 1112334444444433311111111
Q ss_pred -CCCCCC------CCCCCCCC---------CCCCCCCC---CCCcC--cccCCCCCC----CCCCCCCCC-----C-CCC
Q 023320 149 -GDSDTD------EASPVRNI---------DSADKGDF---VTTQS--ERATDSGNA----VAPINSEKP-----Y-EGG 197 (284)
Q Consensus 149 -~~~~~~------~~~~~~~~---------~~~~~~~~---~~~~~--~~~~~~~~~----~~~~~~~~~-----~-~~~ 197 (284)
+.+.+. .++..... +..++.+. ..... .....+... .+....... . ...
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 000000 00000000 00000000 00000 000000000 000000000 0 000
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
...+-.|||-||.++.+|.-|.++|.+||.|..|++++ .+.|||+||++.+.++|..||..|||..+++| .|.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~r---vLQ 351 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDR---VLQ 351 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccce---EEE
Confidence 01156799999999999999999999999999999888 56789999999999999999999999999999 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|+|--++
T Consensus 352 VsFKtnk 358 (360)
T KOG0145|consen 352 VSFKTNK 358 (360)
T ss_pred EEEecCC
Confidence 9997655
No 20
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.94 E-value=9.4e-26 Score=177.64 Aligned_cols=212 Identities=23% Similarity=0.322 Sum_probs=162.2
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHH----HhhcCCCeeEEEEee--eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHN----LFRRKPGFDFCQLKY--TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~----~F~~~G~v~~v~~~~--~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
.+.+++.||||.||+..+..++|++ +|++||.|..|.... .-|| -|||.|.+.+.|..|+..|+|..++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRG---QA~VvFk~~~~As~A~r~l~gfpFy-- 78 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRG---QAFVVFKETEAASAALRALQGFPFY-- 78 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccC---ceEEEecChhHHHHHHHHhcCCccc--
Confidence 3466788999999999999999987 999999998887762 2345 9999999999999999999999999
Q ss_pred CCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCC
Q 023320 104 SGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGN 183 (284)
Q Consensus 104 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (284)
|++++|+||+.+++...+ ..+.++..+++....+........+ ...... .
T Consensus 79 -gK~mriqyA~s~sdii~~-~~~~~v~~~~k~~~~~~~~~~~~~~----------~ng~~~---~--------------- 128 (221)
T KOG4206|consen 79 -GKPMRIQYAKSDSDIIAQ-APGTFVEKEKKINGEILARIKQPLD----------TNGHFY---N--------------- 128 (221)
T ss_pred -CchhheecccCccchhhc-cCceeccccCccccccccccCCccc----------cccccc---c---------------
Confidence 999999999999998777 5556666655544433321110000 000000 0
Q ss_pred CCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc
Q 023320 184 AVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST 263 (284)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~ 263 (284)
.....-+........+++.+||+.|||..++.+.|..+|++|.+...|+++... ++.|||+|.+...|..|..+|+|..
T Consensus 129 ~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-~~iAfve~~~d~~a~~a~~~lq~~~ 207 (221)
T KOG4206|consen 129 MNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-SGIAFVEFLSDRQASAAQQALQGFK 207 (221)
T ss_pred cccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-CceeEEecchhhhhHHHhhhhccce
Confidence 000000000013345679999999999999999999999999999999999854 3699999999999999999999999
Q ss_pred cCCCCCCcEEEEEeec
Q 023320 264 LPSSDRGGMHIEYARS 279 (284)
Q Consensus 264 ~~~~~~~~l~v~~ak~ 279 (284)
|-- .+.|+|.|++.
T Consensus 208 it~--~~~m~i~~a~K 221 (221)
T KOG4206|consen 208 ITK--KNTMQITFAKK 221 (221)
T ss_pred ecc--CceEEecccCC
Confidence 982 56999999863
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=195.86 Aligned_cols=239 Identities=19% Similarity=0.243 Sum_probs=150.5
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee-EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
--+|.|+|||+.|...+|+.+|+.||.|.+|.|.....++.+ ||||+|.+..+|..|++.+||..|. ||+|-|.||
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~---gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKID---GRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceec---CceeEEeee
Confidence 467999999999999999999999999999998854444444 9999999999999999999999999 999999999
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccc--cCCCCCCCCCCCCCCCCCCC--CC-CCCCC---CCCCcCcccC---CCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQ--ESSSADGDSDTDEASPVRNI--DS-ADKGD---FVTTQSERAT---DSG 182 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~-~~~~~---~~~~~~~~~~---~~~ 182 (284)
..+............ ...+......... ...+.+.+....+.-..... .. +.... .......... +++
T Consensus 194 V~Kd~ye~ta~~~~~-s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 194 VDKDTYEDTAHEEKQ-SLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred cccccccccchhhhh-hhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 888765432100000 0000000000000 00000000000000000000 00 00000 0000000000 000
Q ss_pred CCCCCC-CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHH
Q 023320 183 NAVAPI-NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAME 257 (284)
Q Consensus 183 ~~~~~~-~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~ 257 (284)
...... ..............||||+|||+++|+++|.+.|++||.|..+.++. +.++|.|||.|.+..+|+.||+
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 000000 00111123334479999999999999999999999999999998877 5677899999999999999998
Q ss_pred Hh-----CC-CccCCCCCCcEEEEEeecc
Q 023320 258 GL-----QD-STLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 258 ~l-----ng-~~~~~~~~~~l~v~~ak~~ 280 (284)
+- .| ..|+|| .|+|..|..|
T Consensus 353 ~Aspa~e~g~~ll~GR---~Lkv~~Av~R 378 (678)
T KOG0127|consen 353 AASPASEDGSVLLDGR---LLKVTLAVTR 378 (678)
T ss_pred hcCccCCCceEEEecc---EEeeeeccch
Confidence 87 34 678877 9999988543
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4e-25 Score=192.57 Aligned_cols=184 Identities=23% Similarity=0.333 Sum_probs=144.4
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee-----CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-----GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.||||++||+.++.++|.++|+.+|+|..+.+... .|| ||||+|.-.|++++|+..+.+..|. |+.|++
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RG---fgfVtFam~ED~qrA~~e~~~~kf~---Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRG---FGFVTFAMEEDVQRALAETEQSKFE---GRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccC---ccceeeehHhHHHHHHHHhhcCccc---ceeccc
Confidence 89999999999999999999999999988877732 233 9999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
..++.+...... ..+......+..++.+
T Consensus 80 ~~A~~R~r~e~~-~~~e~~~veK~~~q~~--------------------------------------------------- 107 (678)
T KOG0127|consen 80 DPAKKRARSEEV-EKGENKAVEKPIEQKR--------------------------------------------------- 107 (678)
T ss_pred ccccccccchhc-ccccchhhhcccccCC---------------------------------------------------
Confidence 999877554321 0000000000000000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
........+.-.|+|+|||+.+.+.+|+.+|+.||.|..|.|.++ +-.|||||+|....+|..|++.|||.+|+||
T Consensus 108 -~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR 186 (678)
T KOG0127|consen 108 -PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR 186 (678)
T ss_pred -cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCc
Confidence 000001112557999999999999999999999999999999872 2236999999999999999999999999999
Q ss_pred CCCcEEEEEeeccc
Q 023320 268 DRGGMHIEYARSKM 281 (284)
Q Consensus 268 ~~~~l~v~~ak~~~ 281 (284)
+|.|.||.++.
T Consensus 187 ---~VAVDWAV~Kd 197 (678)
T KOG0127|consen 187 ---PVAVDWAVDKD 197 (678)
T ss_pred ---eeEEeeecccc
Confidence 99999997764
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=6.3e-23 Score=179.49 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=134.7
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeec
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 115 (284)
..|||| +++||..|+++|+.+|.|.+++|..+. +.-+||||+|.++++|.+||..+|...+. |++++|-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~---~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLK---GKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccC---CcEEEeehhcc
Confidence 368999 889999999999999999999999776 62239999999999999999999999998 99999998865
Q ss_pred CCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCCC
Q 023320 116 NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYE 195 (284)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (284)
...
T Consensus 75 d~~----------------------------------------------------------------------------- 77 (369)
T KOG0123|consen 75 DPS----------------------------------------------------------------------------- 77 (369)
T ss_pred CCc-----------------------------------------------------------------------------
Confidence 521
Q ss_pred CCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe--eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 196 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
.|||+||+.+++..+|.++|+.||+|.+|++.. +.+++| ||+|++.++|.+|++.|||..+.++ .|.
T Consensus 78 -------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~ 146 (369)
T KOG0123|consen 78 -------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIY 146 (369)
T ss_pred -------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeE
Confidence 299999999999999999999999999999887 457789 9999999999999999999999988 998
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|.....+
T Consensus 147 vg~~~~~ 153 (369)
T KOG0123|consen 147 VGLFERK 153 (369)
T ss_pred Eeeccch
Confidence 8776543
No 24
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=1.7e-23 Score=187.87 Aligned_cols=167 Identities=20% Similarity=0.350 Sum_probs=139.5
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-----eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-----QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-----~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
+|||.||++++|.++|...|+..|.|..+.|....+.. .+||||+|.+.++|+.|++.|+|..+. |..|.|.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld---GH~l~lk 593 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD---GHKLELK 593 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec---CceEEEE
Confidence 39999999999999999999999999988877432221 139999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
++..... .. .+ +
T Consensus 594 ~S~~k~~--~~--~g------K---------------------------------------------------------- 605 (725)
T KOG0110|consen 594 ISENKPA--ST--VG------K---------------------------------------------------------- 605 (725)
T ss_pred eccCccc--cc--cc------c----------------------------------------------------------
Confidence 9871111 00 00 0
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.......++.|+|+|||+..+..+++.+|+.||.+.+|++..+ .++|||||+|-++.+|.+|+++|.++.|.||
T Consensus 606 --~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR 683 (725)
T KOG0110|consen 606 --KKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGR 683 (725)
T ss_pred --ccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceech
Confidence 0000112778999999999999999999999999999998874 3367999999999999999999999999999
Q ss_pred CCCcEEEEEeec
Q 023320 268 DRGGMHIEYARS 279 (284)
Q Consensus 268 ~~~~l~v~~ak~ 279 (284)
.|-++||++
T Consensus 684 ---rLVLEwA~~ 692 (725)
T KOG0110|consen 684 ---RLVLEWAKS 692 (725)
T ss_pred ---hhheehhcc
Confidence 999999975
No 25
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.5e-22 Score=162.36 Aligned_cols=245 Identities=16% Similarity=0.209 Sum_probs=151.7
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC-CCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+-|+||||-|...-.|||++++|..||.|++|.+.... ...++||||.|.+.-+|..||..|+|..-.++-...|.|.|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 45899999999999999999999999999999988321 11122999999999999999999999988666678899999
Q ss_pred eecCCCCCcCC--------------------------------------CCCceee------------------------
Q 023320 113 ARSNSRKKRKP--------------------------------------GSGAYVV------------------------ 130 (284)
Q Consensus 113 a~~~~~~~~~~--------------------------------------~~~~~~~------------------------ 130 (284)
+....++...+ ..+.+..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 86544221110 0000000
Q ss_pred -ecccccchhc-cc---------cCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCcCccc-----CCCCCC--------C
Q 023320 131 -IDKRTKTEAN-VQ---------ESSSADGDSDTDE-ASPVRNIDSADKGDFVTTQSERA-----TDSGNA--------V 185 (284)
Q Consensus 131 -~~~~~~~~~~-~~---------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~ 185 (284)
.-........ .. ...+..++..... +.........-.++...+..-.+ .....+ -
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0000000000 00 0000000000000 00000000000011111110000 000000 0
Q ss_pred CCCCC------------CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCH
Q 023320 186 APINS------------EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEV 249 (284)
Q Consensus 186 ~~~~~------------~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~ 249 (284)
++.+. ........+.++.|||-.||....+.||..+|-.||.|++.++.. +++|+|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00000 011122346689999999999999999999999999999888655 67889999999999
Q ss_pred HHHHHHHHHhCCCccCCCCCCcEEEEEeeccc
Q 023320 250 EQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281 (284)
Q Consensus 250 e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~ 281 (284)
-+|+.||.+|||+.|+-| +|+|++-|.|.
T Consensus 338 ~SaQaAIqAMNGFQIGMK---RLKVQLKRPkd 366 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMK---RLKVQLKRPKD 366 (371)
T ss_pred hhHHHHHHHhcchhhhhh---hhhhhhcCccc
Confidence 999999999999999988 99999987664
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=4.3e-22 Score=169.37 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=73.9
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee----CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT----GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~----~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
+.++||||-|+..+||.|++++|++||.|++|.|..+ +|| ||||.|.+.|.|..||+.|||..--.++..+|.
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG---caFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG---CAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc---eeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 3689999999999999999999999999999999854 344 999999999999999999999887566788999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.|+..+.+.
T Consensus 200 VkFADtqkdk 209 (510)
T KOG0144|consen 200 VKFADTQKDK 209 (510)
T ss_pred EEecccCCCc
Confidence 9999866644
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=3.7e-21 Score=168.39 Aligned_cols=165 Identities=20% Similarity=0.357 Sum_probs=141.6
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeecCC
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNS 117 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 117 (284)
|||.||+.++|..+|+++|+.||.|.+|++..+..|-++| ||+|.+.++|++|++.+||..+. |+.|.|.......
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~---~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLN---GKKIYVGLFERKE 154 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccC---CCeeEEeeccchh
Confidence 9999999999999999999999999999999877776668 99999999999999999999998 9999998776554
Q ss_pred CCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCCCCC
Q 023320 118 RKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGG 197 (284)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (284)
...... .. .
T Consensus 155 er~~~~----------------------------------------------------------------------~~-~ 163 (369)
T KOG0123|consen 155 EREAPL----------------------------------------------------------------------GE-Y 163 (369)
T ss_pred hhcccc----------------------------------------------------------------------cc-h
Confidence 432220 00 1
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
...-+.+|+.|++.+++++.|..+|+.||.|.++.++. +.+++|+||+|.+.++|..|++.|||..++++ .+.|
T Consensus 164 ~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~---~~~V 240 (369)
T KOG0123|consen 164 KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDK---ELYV 240 (369)
T ss_pred hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCcc---ceee
Confidence 11245789999999999999999999999999999888 44578999999999999999999999999977 8888
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
.-+.++
T Consensus 241 ~~aqkk 246 (369)
T KOG0123|consen 241 GRAQKK 246 (369)
T ss_pred cccccc
Confidence 776553
No 28
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=2e-19 Score=164.83 Aligned_cols=84 Identities=19% Similarity=0.324 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....++|||+|||.++++++|+++|+.||.|.+|+|..+..++ ++||||+|.+.++|.+|++.|||..+. |+.|+
T Consensus 201 ~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elg---Gr~Lr 277 (612)
T TIGR01645 201 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLR 277 (612)
T ss_pred ccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 3456899999999999999999999999999999998543222 239999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.++.....
T Consensus 278 V~kAi~pP~ 286 (612)
T TIGR01645 278 VGKCVTPPD 286 (612)
T ss_pred EEecCCCcc
Confidence 999876543
No 29
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.2e-21 Score=161.00 Aligned_cols=170 Identities=14% Similarity=0.280 Sum_probs=134.5
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC--CCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
++||||.+.+.+.||.|+..|..||+|.+|.+.-+. ..+++||||+|.-+|.|.-|++.|||..+. ||.|+|...
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlG---GRNiKVgrP 190 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG---GRNIKVGRP 190 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhcccccc---CccccccCC
Confidence 789999999999999999999999999998766331 111229999999999999999999999998 999998821
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (284)
.+-.... ...|.-.+.-
T Consensus 191 --sNmpQAQ------piID~vqeeA------------------------------------------------------- 207 (544)
T KOG0124|consen 191 --SNMPQAQ------PIIDMVQEEA------------------------------------------------------- 207 (544)
T ss_pred --CCCcccc------hHHHHHHHHH-------------------------------------------------------
Confidence 1111000 0000000000
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
..-.+|||..+.++.+|+||+.+|+.||+|..|.+-+ ...+||+|++|.+..+-..|+..||=+.++|.
T Consensus 208 -----k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQ-- 280 (544)
T KOG0124|consen 208 -----KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQ-- 280 (544)
T ss_pred -----HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccc--
Confidence 0145799999999999999999999999999999977 45678999999999999999999999999866
Q ss_pred CcEEEEEeec
Q 023320 270 GGMHIEYARS 279 (284)
Q Consensus 270 ~~l~v~~ak~ 279 (284)
-|+|.-+..
T Consensus 281 -yLRVGk~vT 289 (544)
T KOG0124|consen 281 -YLRVGKCVT 289 (544)
T ss_pred -eEecccccC
Confidence 888765543
No 30
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1.5e-19 Score=152.99 Aligned_cols=224 Identities=17% Similarity=0.148 Sum_probs=145.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.++.-+++|.|+-+.++.|.|+.+|++||.|..|--.- |+.+-.|.|+|.+.++|..|...|+|+.| .+..+.|+|.
T Consensus 147 ~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~--Knn~FQALvQy~d~~sAq~AK~aLdGqnI-yngcCtLrId 223 (492)
T KOG1190|consen 147 PNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT--KNNGFQALVQYTDAVSAQAAKLALDGQNI-YNGCCTLRID 223 (492)
T ss_pred CceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe--cccchhhhhhccchhhHHHHHHhccCCcc-cCceeEEEee
Confidence 45568899999999999999999999999996553332 44444899999999999999999999999 5666788998
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
|++...-...- .-++.+.-... .-..++. ++.....++.-.. ....-...+..-+..+..+ .
T Consensus 224 ~Sklt~LnvKy-------nndkSRDyTnp----~LP~gd~---~p~l~~~~~aa~~-~~~~~~g~p~aip~~~~~a--~- 285 (492)
T KOG1190|consen 224 FSKLTDLNVKY-------NNDKSRDYTNP----DLPVGDG---QPSLDQLMAAAFG-SVPAVHGAPLAIPSGAAGA--N- 285 (492)
T ss_pred hhhcccceeec-------cccccccccCC----CCCCCcc---ccccchhhhcccc-ccccccCCcccCCccchhh--c-
Confidence 88764332221 00111110000 0000000 1110000000000 0000000000000000000 0
Q ss_pred CCCCCCCC--CcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 192 KPYEGGVQ--PCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 192 ~~~~~~~~--~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
...-.... -+.+|.|.||.. .+|.+-|..+|+.||+|.+|+|+.++. --|.|+|.+...|+-|+++|+|..|.|+
T Consensus 286 ~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk- 363 (492)
T KOG1190|consen 286 AADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK- 363 (492)
T ss_pred ccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc-
Confidence 00001111 168899999986 799999999999999999999988552 5799999999999999999999999988
Q ss_pred CCcEEEEEeecc
Q 023320 269 RGGMHIEYARSK 280 (284)
Q Consensus 269 ~~~l~v~~ak~~ 280 (284)
+|+|.|+|..
T Consensus 364 --~lrvt~SKH~ 373 (492)
T KOG1190|consen 364 --KLRVTLSKHT 373 (492)
T ss_pred --eEEEeeccCc
Confidence 9999999864
No 31
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1.7e-19 Score=152.64 Aligned_cols=194 Identities=22% Similarity=0.318 Sum_probs=148.6
Q ss_pred CCeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 35 INTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 35 ~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+..|.|.||-.. +|.|.|..+|+-||.|..|+|.+..+. .|.|+|.+...|.-|++.|+|..++ |+.|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd---~ALIQmsd~~qAqLA~~hL~g~~l~---gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD---NALIQMSDGQQAQLAMEHLEGHKLY---GKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc---ceeeeecchhHHHHHHHHhhcceec---CceEEEeec
Confidence 688999999876 999999999999999999999976665 8999999999999999999999999 999999999
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (284)
+...-....... +. .+...+ .. ....+ .++. .....
T Consensus 371 KH~~vqlp~egq-------~d----------~glT~d-y~--~spLh-----------rfkk-------------pgsKN 406 (492)
T KOG1190|consen 371 KHTNVQLPREGQ-------ED----------QGLTKD-YG--NSPLH-----------RFKK-------------PGSKN 406 (492)
T ss_pred cCccccCCCCCC-------cc----------cccccc-CC--CCchh-----------hccC-------------ccccc
Confidence 887655433100 00 000000 00 00000 0000 00011
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
.....+|+.+|++.|+|.+++||+|+.+|..-|..........+.+.+|+++++++|+|..|+-.|+...++ +++-|+
T Consensus 407 ~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lg--en~hlR 484 (492)
T KOG1190|consen 407 YQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLG--ENHHLR 484 (492)
T ss_pred ccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCC--CCceEE
Confidence 233456799999999999999999999999999876555444555679999999999999999999999998 567999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|+|+|+.
T Consensus 485 vSFSks~ 491 (492)
T KOG1190|consen 485 VSFSKST 491 (492)
T ss_pred EEeeccc
Confidence 9999975
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=4.3e-19 Score=135.23 Aligned_cols=175 Identities=21% Similarity=0.371 Sum_probs=131.2
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
...++|||+|||.++.|.+|..+|.+||.|.+|.++. ..+.-+||||+|.+..+|+.||.--+|+.+. |..|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~-r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN-RPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEecc-CCCCCCeeEEEecCccchhhhhhcccccccC---cceEEEEe
Confidence 4568999999999999999999999999999999983 2333449999999999999999999999998 99999999
Q ss_pred eecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCC
Q 023320 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEK 192 (284)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (284)
++.-...... .+.+. .. ..+..+ .- ... ..
T Consensus 80 prggr~s~~~--~G~y~---------gg---grgGgg--~g------------------g~r----------------gp 109 (241)
T KOG0105|consen 80 PRGGRSSSDR--RGSYS---------GG---GRGGGG--GG------------------GRR----------------GP 109 (241)
T ss_pred ccCCCccccc--ccccC---------CC---CCCCCC--CC------------------ccc----------------CC
Confidence 8755321111 00000 00 000000 00 000 00
Q ss_pred CCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 193 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 193 ~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+. -..-.+.|.+||++-+.+||++....-|+|-...+.++ +++.|+|...|+-.=|+..|....+...
T Consensus 110 psr---rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 110 PSR---RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred ccc---ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCc
Confidence 000 01456889999999999999999999999988887776 4899999999999999999998888754
No 33
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=1.9e-19 Score=162.01 Aligned_cols=206 Identities=20% Similarity=0.274 Sum_probs=139.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
....|+|+|||..+..++|..+|..||+|..+.+. .++. .|+|+|.+..+|.+|+..|....+. ..++.++|+
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp---~~G~-~aiv~fl~p~eAr~Afrklaysr~k---~~plyle~a 456 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP---PGGT-GAIVEFLNPLEARKAFRKLAYSRFK---SAPLYLEWA 456 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecC---cccc-eeeeeecCccchHHHHHHhchhhhc---cCccccccC
Confidence 34789999999999999999999999999988444 2222 7999999999999999999999998 889999998
Q ss_pred ecCCCCCcCCCCCceeeecccccchhc-cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEAN-VQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEK 192 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (284)
......... ... ............+ ..+..... +.......+. ...+..
T Consensus 457 P~dvf~~~p-ka~-~~~~e~~~~~ee~~~Er~s~~d--------------------~~v~eD~d~t--------e~ss~a 506 (725)
T KOG0110|consen 457 PEDVFTEDP-KAD-DLSAESRSKMEENPSERVSAED--------------------GQVEEDKDPT--------EESSLA 506 (725)
T ss_pred hhhhccCCc-ccc-ccccccccccccCcceeccccc--------------------ccccccCCcc--------ccccch
Confidence 655433111 000 0000000000000 00000000 0000000000 000000
Q ss_pred CCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-------CcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 193 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-------GMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 193 ~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-------~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.........++|||+||++++|.++|...|+..|.|.++.|.... +.|||||+|.+.++|+.|++.|+|+.|+
T Consensus 507 ~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld 586 (725)
T KOG0110|consen 507 RVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD 586 (725)
T ss_pred hhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec
Confidence 011111123349999999999999999999999999999887733 3389999999999999999999999999
Q ss_pred CCCCCcEEEEEeec
Q 023320 266 SSDRGGMHIEYARS 279 (284)
Q Consensus 266 ~~~~~~l~v~~ak~ 279 (284)
|. .|.|.++.+
T Consensus 587 GH---~l~lk~S~~ 597 (725)
T KOG0110|consen 587 GH---KLELKISEN 597 (725)
T ss_pred Cc---eEEEEeccC
Confidence 66 999999983
No 34
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.82 E-value=9e-18 Score=140.79 Aligned_cols=238 Identities=13% Similarity=0.131 Sum_probs=155.9
Q ss_pred CCCCCCeEEEc--CCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVS--GLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~--nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
+..+++.|.+. |-=+.+|.|.|+.++...|.|..|.|. +.+...|.|||.+.+.|++|.+.|||..|+ ...++|
T Consensus 116 s~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIf---kkngVQAmVEFdsv~~AqrAk~alNGADIY-sGCCTL 191 (494)
T KOG1456|consen 116 SATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIF---KKNGVQAMVEFDSVEVAQRAKAALNGADIY-SGCCTL 191 (494)
T ss_pred CCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEE---eccceeeEEeechhHHHHHHHhhccccccc-ccceeE
Confidence 35556666554 556679999999999999999999888 334459999999999999999999999996 445799
Q ss_pred EEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (284)
+|+||++..-...+....++.-+-...+.... .....+.... .+......+++..++..++.+.....+....+..
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~-~g~~~~~r~~---~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r 267 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYD-PGRNHYDRQR---QPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSR 267 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCC-CCCCCCcccc---CCCccCCChhhcCCCCCCCcccccCCCCCCCCCC
Confidence 99999987654444233323211111111000 0000010000 1111111112222222222221111111111111
Q ss_pred -------CCCCCCCCCCCCcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 189 -------NSEKPYEGGVQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 189 -------~~~~~~~~~~~~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
.....+.....++.+++|-+|+. .++-+.|.++|+.||+|.+|++++.+ .+.|.|++.+..+.++|+..||
T Consensus 268 ~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-~gtamVemgd~~aver~v~hLn 346 (494)
T KOG1456|consen 268 YRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-PGTAMVEMGDAYAVERAVTHLN 346 (494)
T ss_pred CccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-cceeEEEcCcHHHHHHHHHHhc
Confidence 01122234556789999999997 78999999999999999999998843 2689999999999999999999
Q ss_pred CCccCCCCCCcEEEEEeecc
Q 023320 261 DSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 261 g~~~~~~~~~~l~v~~ak~~ 280 (284)
+..+.|. +|.|.++|+.
T Consensus 347 n~~lfG~---kl~v~~SkQ~ 363 (494)
T KOG1456|consen 347 NIPLFGG---KLNVCVSKQN 363 (494)
T ss_pred cCccccc---eEEEeecccc
Confidence 9999977 9999998864
No 35
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=9.6e-20 Score=159.75 Aligned_cols=228 Identities=14% Similarity=0.198 Sum_probs=140.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.-|.++||||||.+.++|++|+.+|+.||.|+.|.+.++.+++.. ||||+|.+.++|.+|++.|||.++- |+.|+
T Consensus 275 ~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA---Gr~ik 351 (549)
T KOG0147|consen 275 TGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA---GRLIK 351 (549)
T ss_pred ccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec---CceEE
Confidence 455666999999999999999999999999999999977433333 9999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCC-----CCCC---CCCCCCCCC---CCCcCccc
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEAS-----PVRN---IDSADKGDF---VTTQSERA 178 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~---~~~~~~~~ 178 (284)
|.......+.... .......|.. +..+....+.. ..+ .+.. ..++....+ ........
T Consensus 352 V~~v~~r~~~~~a--~~~~~d~D~~--------d~~gl~~~~~g-~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~ 420 (549)
T KOG0147|consen 352 VSVVTERVDTKEA--AVTQFDFDED--------DRQGLSLGSGG-RNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQ 420 (549)
T ss_pred EEEeeeecccccc--cccccccchh--------hcccccccccc-HHHHHHHHhccCCccccchhhhHHHhccccchHHh
Confidence 8876555443222 0000011100 00000000000 000 0000 000000000 00000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCC----------HHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCC
Q 023320 179 TDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCT----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 248 (284)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t----------~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 248 (284)
...........+......-.+++..+.|+|+=..-| .||+.+-|++||.|..|.+.++ +.|+.||.|.+
T Consensus 421 ~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s 499 (549)
T KOG0147|consen 421 FNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPS 499 (549)
T ss_pred hcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCc
Confidence 000000000000100111115566677888753222 3578889999999998887654 44899999999
Q ss_pred HHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 249 VEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 249 ~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
++.|..|+++|||..|.|| .|++.|=
T Consensus 500 ~~~A~~a~~alhgrWF~gr---~Ita~~~ 525 (549)
T KOG0147|consen 500 AEAAGTAVKALHGRWFAGR---MITAKYL 525 (549)
T ss_pred HHHHHHHHHHHhhhhhccc---eeEEEEe
Confidence 9999999999999999988 9999884
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=4e-20 Score=162.13 Aligned_cols=175 Identities=18% Similarity=0.276 Sum_probs=137.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...-+++|+--|+-.++..+|.++|+.+|.|..|+++.+...+ +..|||+|.|.++...|| .|.|+.+. |.+|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrll---g~pv~ 251 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLL---GVPVI 251 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCccc---CceeE
Confidence 4445999999999999999999999999999999999552222 229999999999999999 69999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
|+........... .+ ..+
T Consensus 252 vq~sEaeknr~a~--~s------------------~a~------------------------------------------ 269 (549)
T KOG0147|consen 252 VQLSEAEKNRAAN--AS------------------PAL------------------------------------------ 269 (549)
T ss_pred ecccHHHHHHHHh--cc------------------ccc------------------------------------------
Confidence 9854222110000 00 000
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
..-....|-..|||+||.+++++++|+.+|+.||.|+.|.+.. +.+++|+||+|.+.++|.+|++.|||.+|-
T Consensus 270 ---~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelA 346 (549)
T KOG0147|consen 270 ---QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELA 346 (549)
T ss_pred ---cccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceec
Confidence 0000011233399999999999999999999999999999876 567889999999999999999999999999
Q ss_pred CCCCCcEEEEEee
Q 023320 266 SSDRGGMHIEYAR 278 (284)
Q Consensus 266 ~~~~~~l~v~~ak 278 (284)
|+ .|+|..--
T Consensus 347 Gr---~ikV~~v~ 356 (549)
T KOG0147|consen 347 GR---LIKVSVVT 356 (549)
T ss_pred Cc---eEEEEEee
Confidence 88 99988653
No 37
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.6e-19 Score=140.84 Aligned_cols=136 Identities=18% Similarity=0.303 Sum_probs=112.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.++-|||||+||+.++||+-|..||++.|.|..++++++ .|+|.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------e~~v~ 46 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------ELKVN 46 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh------------------------------------hhccc
Confidence 445699999999999999999999999999999999842 24566
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
|+... ....+..
T Consensus 47 wa~~p-~nQsk~t------------------------------------------------------------------- 58 (321)
T KOG0148|consen 47 WATAP-GNQSKPT------------------------------------------------------------------- 58 (321)
T ss_pred cccCc-ccCCCCc-------------------------------------------------------------------
Confidence 66544 1111100
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
...+--+||+.|...++-|+|++.|.+||+|.+.++++ .++|+|+||.|-+.++|++||..|||..|+.|
T Consensus 59 ------~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R 132 (321)
T KOG0148|consen 59 ------SNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR 132 (321)
T ss_pred ------cccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccc
Confidence 00144699999999999999999999999999999888 67889999999999999999999999999988
Q ss_pred CCCcEEEEEeecc
Q 023320 268 DRGGMHIEYARSK 280 (284)
Q Consensus 268 ~~~~l~v~~ak~~ 280 (284)
.|+-.||-.|
T Consensus 133 ---~IRTNWATRK 142 (321)
T KOG0148|consen 133 ---TIRTNWATRK 142 (321)
T ss_pred ---eeeccccccC
Confidence 9999998544
No 38
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=6.6e-19 Score=140.45 Aligned_cols=166 Identities=25% Similarity=0.405 Sum_probs=130.7
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeec
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 115 (284)
.++||++||+.+.+.+|.++|..||.+..|.++ .+ |+||+|.+..+|..|+..+||.++. |..+.++|++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~g---f~fv~fed~rda~Dav~~l~~~~l~---~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---NG---FGFVEFEDPRDADDAVHDLDGKELC---GERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---cc---cceeccCchhhhhcccchhcCceec---ceeeeeecccc
Confidence 469999999999999999999999999999888 66 9999999999999999999999997 77788888875
Q ss_pred CCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCCC
Q 023320 116 NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYE 195 (284)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (284)
..........+ ...+ . ... ..
T Consensus 73 ~~~~~g~~~~g---------------------~r~~-----~--------------------~~~-------------~~ 93 (216)
T KOG0106|consen 73 KRRGRGRPRGG---------------------DRRS-----D--------------------SRR-------------YR 93 (216)
T ss_pred cccccCCCCCC---------------------Cccc-----h--------------------hhc-------------cC
Confidence 53322110000 0000 0 000 00
Q ss_pred CCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 196 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
........|+|.|+.-.+.+.+|.+.|+.+|.+..+.+ ..+++||+|++.++|.+|++.|+|..+.++ .|++.
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~~ 166 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGR---RISVE 166 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCc---eeeec
Confidence 00112678999999999999999999999999966666 335799999999999999999999999977 88874
Q ss_pred E
Q 023320 276 Y 276 (284)
Q Consensus 276 ~ 276 (284)
+
T Consensus 167 ~ 167 (216)
T KOG0106|consen 167 K 167 (216)
T ss_pred c
Confidence 4
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=3.2e-17 Score=136.35 Aligned_cols=202 Identities=14% Similarity=0.147 Sum_probs=139.2
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCe--------eEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCe
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGF--------DFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVK 99 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v--------~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~ 99 (284)
.+...-+..|||.|||.++|.+++.++|+++|.| -.|+|..+..|. ++=|.|.|...++..-|+..|++..
T Consensus 128 ~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 128 NPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred CcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc
Confidence 3344556779999999999999999999999988 234555332221 2289999999999999999999999
Q ss_pred eCCCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccC
Q 023320 100 FDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERAT 179 (284)
Q Consensus 100 ~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (284)
+. |+.|+|+.|+........ .....-...+..++....+.+.-.+.... .
T Consensus 208 ~r---g~~~rVerAkfq~Kge~~-~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~------------------------- 257 (382)
T KOG1548|consen 208 LR---GKKLRVERAKFQMKGEYD-ASKKEKGKCKDKKKLKKQQQKLLDWRPDR-D------------------------- 257 (382)
T ss_pred cc---CcEEEEehhhhhhccCcC-cccccccccccHHHHHHHHHhhcccCCCc-c-------------------------
Confidence 99 999999999877654333 11110000011111111111111110000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCeEEEeCCC----CCCC-------HHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCC
Q 023320 180 DSGNAVAPINSEKPYEGGVQPCSTLFIANLG----PNCT-------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 248 (284)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~----~~~t-------~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 248 (284)
........+||.|+|+= ...+ .++|++-+++||.|.+|.+...-..|.+-|.|.+
T Consensus 258 --------------~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n 323 (382)
T KOG1548|consen 258 --------------DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRN 323 (382)
T ss_pred --------------ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCC
Confidence 00011126789999986 2333 3567778999999999999986666899999999
Q ss_pred HHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 249 VEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 249 ~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.++|+.||+.|+|+.++|| .|..+..
T Consensus 324 ~eeA~~ciq~m~GR~fdgR---ql~A~i~ 349 (382)
T KOG1548|consen 324 NEEADQCIQTMDGRWFDGR---QLTASIW 349 (382)
T ss_pred hHHHHHHHHHhcCeeecce---EEEEEEe
Confidence 9999999999999999988 8877653
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=4.7e-18 Score=130.21 Aligned_cols=79 Identities=15% Similarity=0.253 Sum_probs=72.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..++|||+||+.++|+++|+++|++||.|.++.+.. +.+++||||+|.+.++|++|++.|||..|.++ .|+|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr---~l~V~ 109 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGR---HIRVN 109 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 377899999999999999999999999999999876 34678999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 110 ~a~~~~ 115 (144)
T PLN03134 110 PANDRP 115 (144)
T ss_pred eCCcCC
Confidence 998664
No 41
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=136.60 Aligned_cols=237 Identities=16% Similarity=0.205 Sum_probs=141.9
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhh-cCCCeeEEEEeeeCCCCee-EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFR-RKPGFDFCQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~~~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...|.+||.|+||++.|.+|+.+|. +.|+|+.|.+.++..++.. ||.|+|+++|.+++|++.||.+.+. ||+|.+
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~---GR~l~v 118 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVN---GRELVV 118 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhcccc---CceEEE
Confidence 3446799999999999999999997 6889999999987544433 9999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCC----CCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCC
Q 023320 111 ELARSNSRKKRKP----GSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVA 186 (284)
Q Consensus 111 ~~a~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (284)
.-.+........+ ..+.+...-....-........+-.+...-... .......+.......+........ +...
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~-~~D~Dr~sr~~~t~t~~~~~~~~~-~~~l 196 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFS-RRDDDRLSRRNNTNTMSNDYNNSS-NYNL 196 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCC-cccccccccccCccccccccccch-hhhc
Confidence 8654432221110 011111000000000000000000000000000 000000000000000000000000 0000
Q ss_pred CC--CCCCCC--CCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 187 PI--NSEKPY--EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 187 ~~--~~~~~~--~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
-. .....+ .-..|.+..+||.||+..+....|+++|.--|.|+.|.+.- +.+++||.++|+.+-+|.+||..|
T Consensus 197 fgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml 276 (608)
T KOG4212|consen 197 FGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISML 276 (608)
T ss_pred ccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhh
Confidence 00 000000 01123478899999999999999999999999999888654 456679999999999999999999
Q ss_pred CCCccCCCCCCcEEEEEe
Q 023320 260 QDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 260 ng~~~~~~~~~~l~v~~a 277 (284)
++.-+.++ ++.+.+.
T Consensus 277 ~~~g~~~~---~~~~Rl~ 291 (608)
T KOG4212|consen 277 DRQGLFDR---RMTVRLD 291 (608)
T ss_pred ccCCCccc---cceeecc
Confidence 98888877 6666554
No 42
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.2e-17 Score=125.61 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=77.8
Q ss_pred CCCCCCCCC-CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCe
Q 023320 23 PPPYHHQQQ-DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVK 99 (284)
Q Consensus 23 ~~~~~~~~~-~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~ 99 (284)
.|......+ ...+++|||+|||+++||++|+++|++||.|..|++..+...+ +.||||+|.+.++|+.|++.|++..
T Consensus 21 ~~~~~~~~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~ 100 (144)
T PLN03134 21 VPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKE 100 (144)
T ss_pred CccccccccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCE
Confidence 333333444 6667899999999999999999999999999999998654332 2299999999999999999999999
Q ss_pred eCCCCCCeEEEEEeecCCC
Q 023320 100 FDPQSGSVLHIELARSNSR 118 (284)
Q Consensus 100 ~~~~~g~~l~v~~a~~~~~ 118 (284)
|. |+.|+|.++.....
T Consensus 101 i~---Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 101 LN---GRHIRVNPANDRPS 116 (144)
T ss_pred EC---CEEEEEEeCCcCCC
Confidence 98 99999999876543
No 43
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.71 E-value=5.7e-15 Score=124.15 Aligned_cols=203 Identities=16% Similarity=0.163 Sum_probs=146.4
Q ss_pred CCCCCCCeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 30 QQDNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
....++..++|.+|... ++-|.|.++|-.||.|+.|+++....+ .|.|++.+..+.++|+..||+..+. |..|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g---tamVemgd~~aver~v~hLnn~~lf---G~kl 355 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG---TAMVEMGDAYAVERAVTHLNNIPLF---GGKL 355 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc---eeEEEcCcHHHHHHHHHHhccCccc---cceE
Confidence 34677899999999987 788889999999999999999944444 9999999999999999999999998 9999
Q ss_pred EEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (284)
.|.+++...-.... .+...|-...-+.- ....+.+++.+.
T Consensus 356 ~v~~SkQ~~v~~~~----pflLpDgSpSfKdy--s~SkNnRFssp~---------------------------------- 395 (494)
T KOG1456|consen 356 NVCVSKQNFVSPVQ----PFLLPDGSPSFKDY--SGSKNNRFSSPE---------------------------------- 395 (494)
T ss_pred EEeeccccccccCC----ceecCCCCcchhhc--ccccccccCChh----------------------------------
Confidence 99888766543322 11111111000000 000001011100
Q ss_pred CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEEeeCC--cCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMRARGG--MPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 189 ~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~-v~~v~~~~~~~--~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
........+|+++|+.-|.|..+|||.|..+|...+. -.+|++...++ ..-+.++|++.++|..||..||...|.
T Consensus 396 --qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~ 473 (494)
T KOG1456|consen 396 --QASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIE 473 (494)
T ss_pred --HhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhcccccc
Confidence 0112333467899999999999999999999987663 45777776332 237999999999999999999999999
Q ss_pred CCCCC---cEEEEEeecc
Q 023320 266 SSDRG---GMHIEYARSK 280 (284)
Q Consensus 266 ~~~~~---~l~v~~ak~~ 280 (284)
+.++. .|++.|+-++
T Consensus 474 ~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 474 GPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCCCCCCeeeeeeecccc
Confidence 88555 7778877654
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.69 E-value=1.2e-16 Score=135.55 Aligned_cols=165 Identities=15% Similarity=0.219 Sum_probs=127.0
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
...+|||++|+.+++++.|++.|++||.|.+|.++.+.-.+. .|+||+|.+.+....++.. .-..|. |+.|...
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~d---gr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLD---GRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccC---Cccccce
Confidence 578899999999999999999999999999999884311111 1999999999999999863 333444 8888887
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
.+.+..+.....
T Consensus 81 ~av~r~~~~~~~-------------------------------------------------------------------- 92 (311)
T KOG4205|consen 81 RAVSREDQTKVG-------------------------------------------------------------------- 92 (311)
T ss_pred eccCcccccccc--------------------------------------------------------------------
Confidence 776664432220
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.......|||++|+.++++++|++.|.+||.|..+.++. .+.++|+||+|.+.++..+++. .....|.++
T Consensus 93 -----~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk 166 (311)
T KOG4205|consen 93 -----RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGK 166 (311)
T ss_pred -----cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCc
Confidence 000267899999999999999999999999888777665 4556799999999999998885 556667766
Q ss_pred CCCcEEEEEeec
Q 023320 268 DRGGMHIEYARS 279 (284)
Q Consensus 268 ~~~~l~v~~ak~ 279 (284)
.+.|--|-.
T Consensus 167 ---~vevkrA~p 175 (311)
T KOG4205|consen 167 ---KVEVKRAIP 175 (311)
T ss_pred ---eeeEeeccc
Confidence 666665543
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=8.5e-16 Score=140.91 Aligned_cols=77 Identities=26% Similarity=0.409 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++|||+||+.++|+++|+++|+.| |.|+.|++. ++ ||||+|.+.++|++|++.|||..|. |+.|+|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rg---fAFVeF~s~e~A~kAi~~lnG~~i~---Gr~I~V 301 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RD---YAFVHFEDREDAVKAMDELNGKELE---GSEIEV 301 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cC---eEEEEeCCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 446899999999999999999999999 999999877 66 9999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
.|++....
T Consensus 302 ~~Akp~~~ 309 (578)
T TIGR01648 302 TLAKPVDK 309 (578)
T ss_pred EEccCCCc
Confidence 99976543
No 46
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.66 E-value=6.1e-16 Score=134.92 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=72.7
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
....++|||+|||.++|+++|+++|+.||.|++|+++. +.+++||||+|.+.++|.+||+.|||..|.++ +|+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr---~i~ 180 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK---RLK 180 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc---eee
Confidence 34589999999999999999999999999999999876 34568999999999999999999999999988 999
Q ss_pred EEEeec
Q 023320 274 IEYARS 279 (284)
Q Consensus 274 v~~ak~ 279 (284)
|+|++.
T Consensus 181 V~~a~p 186 (346)
T TIGR01659 181 VSYARP 186 (346)
T ss_pred eecccc
Confidence 999875
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=1.1e-15 Score=102.70 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=61.8
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee-CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
|||+|||.++|+++|+++|+.||.|..+++..+ .+..+.+|||+|.+.++|++|++.++|..+. |+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~---~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN---GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC---ccCcC
Confidence 799999999999999999999999999999864 2233349999999999999999999999998 88875
No 48
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.65 E-value=2.2e-15 Score=133.31 Aligned_cols=83 Identities=22% Similarity=0.280 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...+++|||+|||+++++++|+++|++||.|.+|+|..+...+. +||||+|.+.++|.+||..|||..+. ||.|+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~---gr~i~ 342 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLG---NRVLQ 342 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 34456899999999999999999999999999999996642222 29999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.|...+.
T Consensus 343 V~~~~~~~ 350 (352)
T TIGR01661 343 VSFKTNKA 350 (352)
T ss_pred EEEccCCC
Confidence 99987653
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=4.2e-16 Score=104.71 Aligned_cols=67 Identities=28% Similarity=0.479 Sum_probs=61.3
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
|||+|||.++|+++|+++|++||.+..+.+..+ ..+++|||+|.+.++|.+|++.|||..+.++ .|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 799999999999999999999999999998884 3456999999999999999999999999977 664
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=2.8e-15 Score=122.92 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
.++|||+||++.+|+++|+++|+.||.|++|+|..++ .++||||+|.+.++|..||. |||..|.|+ .|+|+++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQ---SVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEeccC
Confidence 5799999999999999999999999999999998754 56899999999999999995 999999988 999999863
No 51
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.8e-15 Score=114.68 Aligned_cols=78 Identities=23% Similarity=0.379 Sum_probs=71.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
.+.|||+||+..+++.||..+|..||.+..|.+-. ...+||||+|+++.+|..|+..|+|..|.|. .|+|+++.-+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCc---eEEEEeecCC
Confidence 78999999999999999999999999999999877 3346999999999999999999999999988 9999998765
Q ss_pred cc
Q 023320 281 MR 282 (284)
Q Consensus 281 ~~ 282 (284)
.+
T Consensus 86 ~r 87 (195)
T KOG0107|consen 86 PR 87 (195)
T ss_pred cc
Confidence 44
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=3.2e-15 Score=123.72 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=77.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
-++|+|.|+|+...+-||+.+|++||.|.+|.|+++.||.++||||+|.+.++|++|-++|+|..+. ||.|.|+.+.
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE---GRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE---GRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee---ceEEEEeccc
Confidence 3899999999999999999999999999999999999999999999999999999999999999998 9999999997
Q ss_pred cCCCCC
Q 023320 115 SNSRKK 120 (284)
Q Consensus 115 ~~~~~~ 120 (284)
.+...+
T Consensus 173 arV~n~ 178 (376)
T KOG0125|consen 173 ARVHNK 178 (376)
T ss_pred hhhccC
Confidence 764433
No 53
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=9e-14 Score=116.72 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...-.+|||..+..+.+|+||+.+|+.||+|..|++-.. .+++++|||++|.+..+-..|+..||-..+. |+-|+
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLG---GQyLR 283 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG---GQYLR 283 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcc---cceEe
Confidence 445589999999999999999999999999999999843 3444559999999999999999999999987 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|..+....+.
T Consensus 284 VGk~vTPP~a 293 (544)
T KOG0124|consen 284 VGKCVTPPDA 293 (544)
T ss_pred cccccCCCch
Confidence 9887655443
No 54
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=3.7e-15 Score=112.98 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
-+.+|||+||+..+++.||..+|..||.|..|.|-....+ ||||+|.++.+|..|+..|+|..|. |..|+|+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG---fAFVEFed~RDA~DAvr~LDG~~~c---G~r~rVE~S 82 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG---FAFVEFEDPRDAEDAVRYLDGKDIC---GSRIRVELS 82 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC---ceEEeccCcccHHHHHhhcCCcccc---CceEEEEee
Confidence 4789999999999999999999999999999988865566 9999999999999999999999997 999999998
Q ss_pred ecCCC
Q 023320 114 RSNSR 118 (284)
Q Consensus 114 ~~~~~ 118 (284)
+-...
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 75554
No 55
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=5.9e-15 Score=122.16 Aligned_cols=76 Identities=14% Similarity=0.229 Sum_probs=70.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe--eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.++|+|+|||+..-|-||+.+|++||.|.+|.|+. ..+||||||+|++++||++|.++|||..+.|| +|.|.-|-
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGR---kIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGR---KIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeece---EEEEeccc
Confidence 57899999999999999999999999999999877 56789999999999999999999999999999 99888764
Q ss_pred c
Q 023320 279 S 279 (284)
Q Consensus 279 ~ 279 (284)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 3
No 56
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.58 E-value=3.5e-13 Score=115.62 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=66.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
..++|||+|||.++|++.|++-|..||.|..++|+. .++.-+.|.|.++++|++|+..|||..+.++ -|+|.|.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime-~GkskGVVrF~s~edAEra~a~Mngs~l~Gr---~I~V~y~ 608 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME-NGKSKGVVRFFSPEDAERACALMNGSRLDGR---NIKVTYF 608 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc-cCCccceEEecCHHHHHHHHHHhccCcccCc---eeeeeeC
Confidence 367899999999999999999999999999999844 2334569999999999999999999999988 9999884
No 57
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=119.50 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..+.. ..+||||+|.+.++|+.||. |+|..|. |+.|+|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~---gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIV---DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeC---CceEEEEecc
Confidence 58999999999999999999999999999999985532 22399999999999999995 9999998 9999999976
Q ss_pred cC
Q 023320 115 SN 116 (284)
Q Consensus 115 ~~ 116 (284)
..
T Consensus 79 ~~ 80 (260)
T PLN03120 79 DY 80 (260)
T ss_pred CC
Confidence 44
No 58
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.6e-15 Score=106.20 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
-..+.||||+||++-++|++|+++|+++|.|..|.+=++.-.+.+ ||||+|.+.++|..|+..++|..+. .++|+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd---dr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD---DRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc---cccee
Confidence 345799999999999999999999999999987654444323333 9999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023320 110 IELARSN 116 (284)
Q Consensus 110 v~~a~~~ 116 (284)
+.|..-.
T Consensus 110 ~D~D~GF 116 (153)
T KOG0121|consen 110 IDWDAGF 116 (153)
T ss_pred eeccccc
Confidence 9987544
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.9e-14 Score=99.63 Aligned_cols=74 Identities=19% Similarity=0.273 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
++.|||+|||+++|.|+..++|..||.|..+++-. +..+|.|||.|+++.+|.+|+++|+|.-+.++ .|.|-|-
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r---yl~vlyy 92 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR---YLVVLYY 92 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc---eEEEEec
Confidence 88999999999999999999999999999999865 56678999999999999999999999999988 8888774
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=1.3e-14 Score=115.65 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=71.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..+|-|.||+.++++++|+++|.+||.|.+|.+.+ +.++|||||.|.+.++|++||+.|||.-++.= .|+|+|
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L---ILrvEw 265 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNL---ILRVEW 265 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceE---EEEEEe
Confidence 67899999999999999999999999999999887 55678999999999999999999999999866 999999
Q ss_pred eecc
Q 023320 277 ARSK 280 (284)
Q Consensus 277 ak~~ 280 (284)
+|.+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9865
No 61
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=1.7e-14 Score=125.39 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=72.3
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCH--HHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEV--EQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~--e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
...+||||||.+.+|++||..+|+.||.|.+|.|++..+++||||+|.+. .++.+||+.|||.++.|+ .|+|.-|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeec
Confidence 36789999999999999999999999999999999977799999999987 789999999999999988 9999998
Q ss_pred ec
Q 023320 278 RS 279 (284)
Q Consensus 278 k~ 279 (284)
|.
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 75
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.3e-14 Score=127.62 Aligned_cols=185 Identities=16% Similarity=0.232 Sum_probs=131.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCC--CCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.....++||+|||...+++++.++...||.+....+..+.. ..+.|||++|.+......|+..|||..+. ++.|.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg---d~~lv 362 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG---DKKLV 362 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc---CceeE
Confidence 34457899999999999999999999999998777775433 33349999999999999999999999998 89999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
++.+-........... ... . .+.+.
T Consensus 363 vq~A~~g~~~~~~~~~------------~~~----~-----------------------~~~~i---------------- 387 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFN------------ISQ----S-----------------------QVPGI---------------- 387 (500)
T ss_pred eehhhccchhccccCC------------ccc----c-----------------------ccccc----------------
Confidence 9987554332211000 000 0 00000
Q ss_pred CCCCCCCCCCCcCeEEEeCCCC--C-CCH-------HHHHHHhccCCCceEEEEEee-------CCcCeEEEEeCCHHHH
Q 023320 190 SEKPYEGGVQPCSTLFIANLGP--N-CTE-------DELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQA 252 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~--~-~t~-------~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A 252 (284)
..........+..+|.+-|+=. . ..+ |+++.-|+.||.|.+|.+... -+.|-.||+|.+.+++
T Consensus 388 ~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~ 467 (500)
T KOG0120|consen 388 PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDS 467 (500)
T ss_pred hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHH
Confidence 0000112223466666666531 0 111 245557899999999998663 3446899999999999
Q ss_pred HHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 253 SIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 253 ~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
++|+++|+|+++.++ +|..+|-
T Consensus 468 qrA~~~L~GrKF~nR---tVvtsYy 489 (500)
T KOG0120|consen 468 QRAMEELTGRKFANR---TVVASYY 489 (500)
T ss_pred HHHHHHccCceeCCc---EEEEEec
Confidence 999999999999988 9888873
No 63
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=1.8e-14 Score=96.86 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=57.7
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC---CcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 204 LFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG---GMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~---~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
|||+|||.++++++|+++|+.||.|..+.+...+ ++++|||+|.+.++|.+|++.++|..|+|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 7999999999999999999999999999998853 467999999999999999999999999977
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.9e-14 Score=103.47 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=67.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCc----CeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM----PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~----~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.++||||+||.+.++||.|.++|+..|+|.+|.|--++.+ |||||+|.+.++|..|++-+||+.++++ +|+|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr---~ir~D 111 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR---PIRID 111 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc---ceeee
Confidence 3789999999999999999999999999999987553322 4999999999999999999999999999 99998
Q ss_pred Ee
Q 023320 276 YA 277 (284)
Q Consensus 276 ~a 277 (284)
|.
T Consensus 112 ~D 113 (153)
T KOG0121|consen 112 WD 113 (153)
T ss_pred cc
Confidence 84
No 65
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=8e-14 Score=93.68 Aligned_cols=69 Identities=29% Similarity=0.474 Sum_probs=58.9
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
|||+|||.++++++|+++|+.||.|..+++....++. ..+|||+|.+.++|.+|++.++|..+. |+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~---g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID---GRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC---CEEcC
Confidence 7999999999999999999999999999998543321 229999999999999999999999998 88774
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=2.8e-13 Score=115.17 Aligned_cols=172 Identities=20% Similarity=0.249 Sum_probs=117.3
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
..+|||+|||..+|+++|+++|..||.|..+.+..+...+ .+||||+|.+.++|..|++.++|..+. |+.|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~---~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE---GRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC---CceeEeec
Confidence 6999999999999999999999999999888888553112 129999999999999999999999998 99999999
Q ss_pred eec-CCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 113 ARS-NSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 113 a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
+.. ....... .. . ...... . ...
T Consensus 192 ~~~~~~~~~~~--~~--~-----~~~~~~------~-----------------------------------------~~~ 215 (306)
T COG0724 192 AQPASQPRSEL--SN--N-----LDASFA------K-----------------------------------------KLS 215 (306)
T ss_pred ccccccccccc--cc--c-----cchhhh------c-----------------------------------------ccc
Confidence 765 1110000 00 0 000000 0 000
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCc----CeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM----PVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~----~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
............+++.|++..++..++...|..+|.+....+...... ...++.+.....+.......+.....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (306)
T COG0724 216 RGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKIL 293 (306)
T ss_pred ccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeec
Confidence 001111223778999999999999999999999999977766552211 13445555555555555544444433
No 67
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=1e-13 Score=95.96 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
..++-|||+|||+.+|.++..++|.+||.|..|+|=.. ++..+.|||.|.+..+|++|+..|+|+.+. ++.+.+.|
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~---~ryl~vly 91 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVD---NRYLVVLY 91 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccC---CceEEEEe
Confidence 45799999999999999999999999999998888733 222239999999999999999999999998 99999998
Q ss_pred eecC
Q 023320 113 ARSN 116 (284)
Q Consensus 113 a~~~ 116 (284)
-+..
T Consensus 92 yq~~ 95 (124)
T KOG0114|consen 92 YQPE 95 (124)
T ss_pred cCHH
Confidence 7654
No 68
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.3e-13 Score=111.43 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=68.2
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
.+.+|||+||++.+|+++|+++|+.||.|..|+|..+.+. +.+|||+|.+.++|+.|+ .|+|..|. +++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAl-lLnGa~l~---d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAV-LLSGATIV---DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHH-hcCCCeeC---CceEEEEeC
Confidence 4689999999999999999999999999999999855333 349999999999999999 59999998 999999876
Q ss_pred ec
Q 023320 114 RS 115 (284)
Q Consensus 114 ~~ 115 (284)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 43
No 69
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=1.1e-13 Score=111.79 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee-CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
+.+|||+||++.+|+++|+++|+.||.|.+|+|.++ +.+++|||+|.+.++|..|+ .|||..|.++ .|.|+-.
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~~ 78 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ---RVCITRW 78 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEeC
Confidence 679999999999999999999999999999999884 34469999999999999999 6999999988 8888764
No 70
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.7e-13 Score=109.29 Aligned_cols=83 Identities=25% Similarity=0.409 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..+...+|-|.||+.+++|++|+++|.+||.|..|.|-.+...+.+ ||||+|.+.++|.+||..|||+-+. .-.|
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd---~LIL 261 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD---NLIL 261 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc---eEEE
Confidence 4556788999999999999999999999999999988866444433 9999999999999999999999997 8899
Q ss_pred EEEEeecC
Q 023320 109 HIELARSN 116 (284)
Q Consensus 109 ~v~~a~~~ 116 (284)
+|+|+++.
T Consensus 262 rvEwskP~ 269 (270)
T KOG0122|consen 262 RVEWSKPS 269 (270)
T ss_pred EEEecCCC
Confidence 99999875
No 71
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=1.5e-13 Score=110.43 Aligned_cols=79 Identities=20% Similarity=0.329 Sum_probs=72.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
...+.|.|--||.++|+|||+.+|+..|+|++|+++++ ++-||+||.|-+++||++|+..|||..+-.| +|+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K---TIKV 115 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK---TIKV 115 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc---eEEE
Confidence 34788999999999999999999999999999999984 4556999999999999999999999999988 9999
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
+|||.-
T Consensus 116 SyARPS 121 (360)
T KOG0145|consen 116 SYARPS 121 (360)
T ss_pred EeccCC
Confidence 999853
No 72
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=1e-13 Score=88.85 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=51.3
Q ss_pred HHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 218 LKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 218 L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
|+++|++||.|+++.+..+. +++|||+|.+.++|.+|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 68999999999999998765 58999999999999999999999999977 9999997
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=1.5e-13 Score=92.07 Aligned_cols=69 Identities=32% Similarity=0.524 Sum_probs=62.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
+|||+|||..+++++|+++|+.||.+..+.+.... ++++|||+|.+.++|.+|++.|+|..+.++ .|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 58999999999999999999999999999988743 567999999999999999999999999876 7765
No 74
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.49 E-value=9.2e-14 Score=110.09 Aligned_cols=80 Identities=33% Similarity=0.390 Sum_probs=73.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHH----HhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQ----TLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~----~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
.++.||||.||+..+..++|+. +|++||.|..|...+ .+.+|-|||.|.+.+.|..|+.+|+|+.+.|| .|+
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK---PMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc---hhh
Confidence 3466999999999999999999 999999999998776 55678999999999999999999999999988 999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|+||+++.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99999865
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.5e-13 Score=119.51 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCH--HHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNH--QTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~--~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....-+||||||++.+|+++|+.+|+.||.|..|.|+ +..| ++||||+|.+. .++.+||..|||..+. |+.|+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG-RGFAFVEMssdddaEeeKAISaLNGAEWK---GR~LK 81 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWK---GGRLR 81 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC-CceEEEEecCCcHHHHHHHHHHhcCCeec---CceeE
Confidence 3445889999999999999999999999999999998 4333 44999999987 7899999999999999 99999
Q ss_pred EEEeecC
Q 023320 110 IELARSN 116 (284)
Q Consensus 110 v~~a~~~ 116 (284)
|+-|+..
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9998744
No 76
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.3e-13 Score=118.51 Aligned_cols=77 Identities=29% Similarity=0.491 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
.+.|||+||+.++||+.|+++|++||.|+.|+.. |. ||||+|.+.++|.+||+.+||+.|. |.+|.|..|+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rD---YaFVHf~eR~davkAm~~~ngkeld---G~~iEvtLAK 329 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RD---YAFVHFAEREDAVKAMKETNGKELD---GSPIEVTLAK 329 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cc---eeEEeecchHHHHHHHHHhcCceec---CceEEEEecC
Confidence 4899999999999999999999999999999888 77 9999999999999999999999998 9999999999
Q ss_pred cCCCCC
Q 023320 115 SNSRKK 120 (284)
Q Consensus 115 ~~~~~~ 120 (284)
+....+
T Consensus 330 P~~k~k 335 (506)
T KOG0117|consen 330 PVDKKK 335 (506)
T ss_pred Chhhhc
Confidence 876543
No 77
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.45 E-value=5.7e-12 Score=109.96 Aligned_cols=159 Identities=15% Similarity=0.166 Sum_probs=106.6
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
....-|-+++||..+|++||.++|+.++ |+.+.+.. .++++ -|||+|.+.|++++|++ .+...+. .|-|.|
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg---~RYIEV 80 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMG---HRYIEV 80 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhC---CceEEE
Confidence 3456788999999999999999999985 55544442 21222 99999999999999997 5555554 555555
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.-+...... . ..++..
T Consensus 81 f~~~~~e~d--~-----------~~~~~g--------------------------------------------------- 96 (510)
T KOG4211|consen 81 FTAGGAEAD--W-----------VMRPGG--------------------------------------------------- 96 (510)
T ss_pred EccCCcccc--c-----------cccCCC---------------------------------------------------
Confidence 533222110 0 000000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEE-EEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-MRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
... .....+|-+++||+++|++||.++|+..--|.... +.. .+..+-|||+|++.|+|++|+.. |-..|.-
T Consensus 97 ---~~s-~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGh 171 (510)
T KOG4211|consen 97 ---PNS-SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGH 171 (510)
T ss_pred ---CCC-CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhcc
Confidence 000 01256788999999999999999999875555522 222 33445899999999999999964 3445554
Q ss_pred C
Q 023320 267 S 267 (284)
Q Consensus 267 ~ 267 (284)
+
T Consensus 172 R 172 (510)
T KOG4211|consen 172 R 172 (510)
T ss_pred c
Confidence 4
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=8.3e-13 Score=88.40 Aligned_cols=71 Identities=30% Similarity=0.492 Sum_probs=61.7
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
+|||+|||..+++++|+++|+.||.|..+.+........++|||+|.+.++|++|+..++|..+. |+.++|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~---~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG---GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC---CEEEee
Confidence 59999999999999999999999999998888443111229999999999999999999999997 888876
No 79
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=9.7e-13 Score=88.56 Aligned_cols=71 Identities=30% Similarity=0.543 Sum_probs=64.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC---CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG---GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~---~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+|+|+|||..+++++|+++|+.||.+..+.+.... .+++|||+|.+.++|..|++.++|..+.++ .|.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 58999999999999999999999999999988743 367999999999999999999999999977 888764
No 80
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.3e-13 Score=104.07 Aligned_cols=77 Identities=22% Similarity=0.431 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCC-cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG-MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~-~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
.++|||+|||.++.+.||.++|.+||.|..|.+....+ -+||||+|+++.+|..||..-+|..++ ++.|+|+|++.
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd---g~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD---GCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC---cceEEEEeccC
Confidence 67899999999999999999999999999999887443 469999999999999999999999998 55999999875
Q ss_pred c
Q 023320 280 K 280 (284)
Q Consensus 280 ~ 280 (284)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 3
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=1.8e-13 Score=106.55 Aligned_cols=75 Identities=20% Similarity=0.353 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
-++|.|-||-+-++.++|..+|++||.|.+|.|.. .++++||||.|-+-.+|+.|+++|+|.+|+|+ -|+|++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR---elrVq~ 89 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQM 89 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccc---eeeehh
Confidence 57899999999999999999999999999999977 66788999999999999999999999999988 999999
Q ss_pred ee
Q 023320 277 AR 278 (284)
Q Consensus 277 ak 278 (284)
|+
T Consensus 90 ar 91 (256)
T KOG4207|consen 90 AR 91 (256)
T ss_pred hh
Confidence 86
No 82
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.42 E-value=3.2e-13 Score=119.64 Aligned_cols=81 Identities=22% Similarity=0.422 Sum_probs=74.7
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+.|||||+|++++|++|..+|+..|.|.++++.++..++++ ||||+|.+.++|..|++.|||..+. ||.|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~---gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN---GRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC---CceEEeecc
Confidence 89999999999999999999999999999999987666655 9999999999999999999999998 999999998
Q ss_pred ecCCCC
Q 023320 114 RSNSRK 119 (284)
Q Consensus 114 ~~~~~~ 119 (284)
......
T Consensus 96 ~~~~~~ 101 (435)
T KOG0108|consen 96 SNRKNA 101 (435)
T ss_pred cccchh
Confidence 766543
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=9e-13 Score=87.90 Aligned_cols=67 Identities=27% Similarity=0.473 Sum_probs=60.4
Q ss_pred EeCCCCCCCHHHHHHHhccCCCceEEEEEeeCC----cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 206 IANLGPNCTEDELKQTLSVYPGFNMLKMRARGG----MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 206 v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~----~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
|+|||..+++++|+++|+.||.|..+.+..... +++|||+|.+.++|.+|++.|+|..+.++ .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR---PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc---EEEeC
Confidence 579999999999999999999999999887443 67999999999999999999999999877 77763
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=4.2e-13 Score=104.48 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=74.2
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
+|+.+..-+|.|-||-+.++.++|+.+|++||.|-+|.|..+.-+++. ||||-|.+..+|+.|++.|+|..++ |+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld---gR 83 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD---GR 83 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec---cc
Confidence 356777899999999999999999999999999999988844322222 9999999999999999999999998 99
Q ss_pred eEEEEEeecC
Q 023320 107 VLHIELARSN 116 (284)
Q Consensus 107 ~l~v~~a~~~ 116 (284)
.|+|++|+-.
T Consensus 84 elrVq~aryg 93 (256)
T KOG4207|consen 84 ELRVQMARYG 93 (256)
T ss_pred eeeehhhhcC
Confidence 9999998633
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.9e-13 Score=107.31 Aligned_cols=78 Identities=21% Similarity=0.378 Sum_probs=72.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+||||++|...+||.-|...|-+||+|..|.+.. .+.++||||+|...|+|..||..||+.+|.|| +|+|.|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr---tirVN~ 86 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR---TIRVNL 86 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcce---eEEEee
Confidence 78999999999999999999999999999999866 56678999999999999999999999999999 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
||...
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 98643
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.40 E-value=2.2e-12 Score=105.85 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=74.1
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
...|-+||||+-|+.+++|.+|+..|+.||.|+.|+|+. +.++|||||+|++.-+-..|.+..+|.+|+++ .|
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr---ri 173 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR---RI 173 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc---EE
Confidence 345689999999999999999999999999999999987 57788999999999999999999999999988 99
Q ss_pred EEEEeecc
Q 023320 273 HIEYARSK 280 (284)
Q Consensus 273 ~v~~ak~~ 280 (284)
-|.|-+.+
T Consensus 174 ~VDvERgR 181 (335)
T KOG0113|consen 174 LVDVERGR 181 (335)
T ss_pred EEEecccc
Confidence 99886654
No 87
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.4e-14 Score=108.32 Aligned_cols=74 Identities=15% Similarity=0.247 Sum_probs=69.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+.-|||+|||+.+||.||.-+||+||+++.|.+++ +.++||||+.|++..+..-|+..|||..|.|| .|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR---tirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR---TIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecce---eEEeee
Confidence 66899999999999999999999999999999988 56788999999999999999999999999999 999976
Q ss_pred e
Q 023320 277 A 277 (284)
Q Consensus 277 a 277 (284)
-
T Consensus 112 v 112 (219)
T KOG0126|consen 112 V 112 (219)
T ss_pred c
Confidence 3
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.1e-12 Score=95.29 Aligned_cols=75 Identities=13% Similarity=0.316 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+=.|||.++....|+++|.+.|..||+|+.+.+.. +..||||+|+|++.++|+.|+++|||..|-+. .|.|.|
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q---~v~VDw 148 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ---NVSVDW 148 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC---ceeEEE
Confidence 66899999999999999999999999999998765 45577999999999999999999999999977 999999
Q ss_pred ee
Q 023320 277 AR 278 (284)
Q Consensus 277 ak 278 (284)
+-
T Consensus 149 ~F 150 (170)
T KOG0130|consen 149 CF 150 (170)
T ss_pred EE
Confidence 73
No 89
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1e-12 Score=104.51 Aligned_cols=66 Identities=12% Similarity=0.212 Sum_probs=58.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
-+.|||+||++.++.|+|++.|++||+|.+..++. +++|||+||+|.+.|+|.+|++..| -.|+||
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 57899999999999999999999999999887766 6788999999999999999998653 346666
No 90
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.8e-12 Score=84.69 Aligned_cols=73 Identities=30% Similarity=0.496 Sum_probs=63.6
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC-CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+|+|+|||..+++++|+++|+.||.|..+.+.....+ ...+|||+|.+.++|..|++.+++..+. |+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~---~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG---GRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEeC
Confidence 5899999999999999999999999999988854321 1229999999999999999999999998 99988764
No 91
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.37 E-value=1.3e-12 Score=103.91 Aligned_cols=77 Identities=19% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
-.+||||||++.++.+.|++.|++||+|.++.|+.+...++ +||||+|+|.++|.+|++.-+ -.|+ ||...|+.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId---GR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID---GRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc---ccccccch
Confidence 37899999999999999999999999999998885422221 299999999999999998544 3344 99999988
Q ss_pred eec
Q 023320 113 ARS 115 (284)
Q Consensus 113 a~~ 115 (284)
|..
T Consensus 88 A~l 90 (247)
T KOG0149|consen 88 ASL 90 (247)
T ss_pred hhh
Confidence 765
No 92
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.8e-12 Score=103.83 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.+|-+||||+-|+++++|++|++.|+.||+|..|+|+.+.-.+++ ||||+|.+..+...|.+..+|+.|+ |+.|.
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id---grri~ 174 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID---GRRIL 174 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec---CcEEE
Confidence 577899999999999999999999999999999999855333333 9999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.+-....
T Consensus 175 VDvERgRT 182 (335)
T KOG0113|consen 175 VDVERGRT 182 (335)
T ss_pred EEeccccc
Confidence 98866444
No 93
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=4.3e-12 Score=81.23 Aligned_cols=56 Identities=29% Similarity=0.463 Sum_probs=49.3
Q ss_pred HHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 52 IHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 52 L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
|+++|++||.|..+.+....++ +|||+|.+.++|..|++.|||..+. |+.|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~---~a~V~f~~~~~A~~a~~~l~~~~~~---g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRG---FAFVEFASVEDAQKAIEQLNGRQFN---GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTT---EEEEEESSHHHHHHHHHHHTTSEET---TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEEEC
Confidence 6899999999999988732224 9999999999999999999999998 999999986
No 94
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=4.6e-13 Score=124.00 Aligned_cols=161 Identities=19% Similarity=0.304 Sum_probs=134.1
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC-CCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...+++||++||+..+++.+|+..|..+|.|.+|.|.... +....||||.|.+...+-+|...+.+..|. ...+++
T Consensus 369 ~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~---~g~~r~ 445 (975)
T KOG0112|consen 369 FRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIG---NGTHRI 445 (975)
T ss_pred hhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccc---cCcccc
Confidence 4557999999999999999999999999999999888432 222239999999999999999999998885 222333
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.+...
T Consensus 446 glG~~--------------------------------------------------------------------------- 450 (975)
T KOG0112|consen 446 GLGQP--------------------------------------------------------------------------- 450 (975)
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 22211
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
...+.+.+++++|+..+....|..+|..||.|..+.+..++ .||+|.|++...|+.|++.|-|..|++- .+
T Consensus 451 ------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq--~yayi~yes~~~aq~a~~~~rgap~G~P-~~ 521 (975)
T KOG0112|consen 451 ------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ--PYAYIQYESPPAAQAATHDMRGAPLGGP-PR 521 (975)
T ss_pred ------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC--cceeeecccCccchhhHHHHhcCcCCCC-Cc
Confidence 01247889999999999999999999999999999888776 8999999999999999999999999865 55
Q ss_pred cEEEEEeec
Q 023320 271 GMHIEYARS 279 (284)
Q Consensus 271 ~l~v~~ak~ 279 (284)
.++|.|++.
T Consensus 522 r~rvdla~~ 530 (975)
T KOG0112|consen 522 RLRVDLASP 530 (975)
T ss_pred ccccccccC
Confidence 799999864
No 95
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=3.3e-12 Score=113.92 Aligned_cols=186 Identities=18% Similarity=0.260 Sum_probs=135.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcC-----------CC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHH
Q 023320 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRK-----------PG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALH 93 (284)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-----------G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~ 93 (284)
..+.+-...+++++|+++|..++++.+-.+|..- |. +..+.+. ..++ |||++|.+.+.|..|+.
T Consensus 166 ~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n-~~~n---fa~ie~~s~~~at~~~~ 241 (500)
T KOG0120|consen 166 PMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN-LEKN---FAFIEFRSISEATEAMA 241 (500)
T ss_pred ccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec-cccc---ceeEEecCCCchhhhhc
Confidence 3444557778999999999999999999888753 33 5666665 3345 99999999999999985
Q ss_pred HhCCCeeCCCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023320 94 ELNGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTT 173 (284)
Q Consensus 94 ~l~g~~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (284)
+++..+. |.++++..-........- +..... ....
T Consensus 242 -~~~~~f~---g~~~~~~r~~d~~~~p~~------~~~~~~---------~~~~-------------------------- 276 (500)
T KOG0120|consen 242 -LDGIIFE---GRPLKIRRPHDYQPVPGI------TLSPSQ---------LGKV-------------------------- 276 (500)
T ss_pred -ccchhhC---CCCceecccccccCCccc------hhhhcc---------cccc--------------------------
Confidence 7888887 888887644333221110 000000 0000
Q ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCH
Q 023320 174 QSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEV 249 (284)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~ 249 (284)
...............+||+|||..+++.+++++.+.||.+....++. +.+++|||.+|-++
T Consensus 277 ---------------~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dp 341 (500)
T KOG0120|consen 277 ---------------GLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDP 341 (500)
T ss_pred ---------------CCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCC
Confidence 00000111112367899999999999999999999999998888776 46788999999999
Q ss_pred HHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 250 EQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 250 e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.-...|+..|||..++++ .|.|+.|-
T Consensus 342 svtd~A~agLnGm~lgd~---~lvvq~A~ 367 (500)
T KOG0120|consen 342 SVTDQAIAGLNGMQLGDK---KLVVQRAI 367 (500)
T ss_pred cchhhhhcccchhhhcCc---eeEeehhh
Confidence 999999999999999988 99998874
No 96
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=5.3e-12 Score=91.80 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
+-++-.|||.++...+||++|.+.|..||+|..+++.++.+.+-. ||+|+|.+.++|+.|+..+||..+. |+.|.
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll---~q~v~ 145 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL---GQNVS 145 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh---CCcee
Confidence 456678999999999999999999999999999999988776633 9999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.|+......
T Consensus 146 VDw~Fv~gp~ 155 (170)
T KOG0130|consen 146 VDWCFVKGPE 155 (170)
T ss_pred EEEEEecCCc
Confidence 9999877553
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.33 E-value=9e-12 Score=82.97 Aligned_cols=68 Identities=31% Similarity=0.468 Sum_probs=59.2
Q ss_pred EcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 40 VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 40 V~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
|+|||..+++++|+++|+.||.|..+.+......+ ..+|||+|.+.++|..|+..+++..+. |+.++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~---~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD---GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC---CcEEEe
Confidence 68999999999999999999999999888543211 229999999999999999999999997 888876
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.32 E-value=4.1e-12 Score=112.66 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=72.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
..+||||+|+++++++|.++|+..|.|.+++++. ++.+||||++|.+.++|.+|++.|||.++.++ +|+|.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR---KLRVNYA 95 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc---eEEeecc
Confidence 7899999999999999999999999999999877 56678999999999999999999999999999 9999998
Q ss_pred ecccc
Q 023320 278 RSKMR 282 (284)
Q Consensus 278 k~~~~ 282 (284)
.+...
T Consensus 96 ~~~~~ 100 (435)
T KOG0108|consen 96 SNRKN 100 (435)
T ss_pred cccch
Confidence 76544
No 99
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=1.6e-12 Score=102.23 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC--CCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG--RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~--~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...-|+||||+|..++||..|...|-.||.|..|++.++- ..+.+||||+|...|+|..||..||+.++. ||.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~---Grtir 83 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF---GRTIR 83 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc---ceeEE
Confidence 4557999999999999999999999999999999988652 222229999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|+++++....
T Consensus 84 VN~AkP~kik 93 (298)
T KOG0111|consen 84 VNLAKPEKIK 93 (298)
T ss_pred EeecCCcccc
Confidence 9999876543
No 100
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=1.2e-11 Score=105.12 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=69.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..+|||+||+.++|+++|.++|..||.+..+.+.. +..++||||+|.+.++|..|++.|+|..|.++ .|.|.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR---PLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc---eeEeec
Confidence 68999999999999999999999999999888866 35678999999999999999999999999988 999999
Q ss_pred ee
Q 023320 277 AR 278 (284)
Q Consensus 277 ak 278 (284)
+.
T Consensus 192 ~~ 193 (306)
T COG0724 192 AQ 193 (306)
T ss_pred cc
Confidence 64
No 101
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.28 E-value=2e-11 Score=96.36 Aligned_cols=82 Identities=26% Similarity=0.395 Sum_probs=72.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-eC----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
-+||||.+||.++..-||..+|..|-+++...+.. ++ .+++|||+|.+..+|+.|+++|||..|+..-+.+|+|+
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 68999999999999999999999999988776655 22 23799999999999999999999999998877799999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
+||++.+
T Consensus 114 lAKSNtK 120 (284)
T KOG1457|consen 114 LAKSNTK 120 (284)
T ss_pred ehhcCcc
Confidence 9987654
No 102
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=5.4e-12 Score=103.18 Aligned_cols=71 Identities=28% Similarity=0.384 Sum_probs=68.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
.|||+|||..+++.+|+.+|++||.|.+++++++ ||||..++...|..|+..|||..|+|. .|.|+=+|+|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence 6999999999999999999999999999999976 699999999999999999999999988 9999999988
No 103
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=1e-11 Score=95.03 Aligned_cols=75 Identities=21% Similarity=0.235 Sum_probs=69.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..||||+||+..++++.|.++|-+.|.|.++.+.+ +..+|||||+|.+.|+|+=|++.||+.+|.|| +|+|.-
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgr---pIrv~k 85 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGR---PIRVNK 85 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCc---eeEEEe
Confidence 67999999999999999999999999999999876 34568999999999999999999999999999 999987
Q ss_pred ee
Q 023320 277 AR 278 (284)
Q Consensus 277 ak 278 (284)
+-
T Consensus 86 as 87 (203)
T KOG0131|consen 86 AS 87 (203)
T ss_pred cc
Confidence 65
No 104
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=7.8e-13 Score=100.99 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..+.-|||||||++.||.||.-+|++||+|..|-++.+.++++. |||..|.+..+..-|+..|||..|. ||.|+|
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~---gRtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL---GRTIRV 109 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec---ceeEEe
Confidence 34677999999999999999999999999999988866555544 9999999999999999999999999 999999
Q ss_pred EEee
Q 023320 111 ELAR 114 (284)
Q Consensus 111 ~~a~ 114 (284)
.-..
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 8543
No 105
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.25 E-value=1.3e-11 Score=112.92 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=71.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
++|||||.|+.++++.||.++|+.||+|++|.++..+ ++|||.+.+..+|.+|+.+|+...+.++ .|+|.||..+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccce---eeEEeeeccC
Confidence 7999999999999999999999999999999998876 8999999999999999999999999988 9999999765
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=4.6e-12 Score=99.57 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=114.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.+.-+||||+||-..++|+-|.++|-+.|+|..|.|.-...++..||||.|.+..+...|++.+||..+. ++++++.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~---~~e~q~~ 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE---EDEEQRT 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc---cchhhcc
Confidence 3456999999999999999999999999999888887333333449999999999999999999999998 8887776
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
+-.-.+.
T Consensus 83 ~r~G~sh------------------------------------------------------------------------- 89 (267)
T KOG4454|consen 83 LRCGNSH------------------------------------------------------------------------- 89 (267)
T ss_pred cccCCCc-------------------------------------------------------------------------
Confidence 3311100
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
. -|+..++++.+..+|++-|.+..+++-. +++++++|+.+...-+.-.|+..-++..+..+
T Consensus 90 ----------a-----pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 90 ----------A-----PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred ----------c-----hhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 0 1455678888889999999888887655 44567999999888888888887777766644
No 107
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.19 E-value=4e-11 Score=106.26 Aligned_cols=181 Identities=20% Similarity=0.155 Sum_probs=118.4
Q ss_pred CCCC--CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 28 HQQQ--DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 28 ~~~~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
+.|+ .-+.++|+|-|||..+++++|+++|+.||+|..|+.....++ ..||+|.|..+|+.|++.|++.++. |
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~---~~~v~FyDvR~A~~Alk~l~~~~~~---~ 139 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG---IVFVEFYDVRDAERALKALNRREIA---G 139 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc---eEEEEEeehHhHHHHHHHHHHHHhh---h
Confidence 4444 455699999999999999999999999999998877755666 9999999999999999999999998 8
Q ss_pred CeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCC
Q 023320 106 SVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAV 185 (284)
Q Consensus 106 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (284)
+.+........ ......+ ..++. ...+ ...+
T Consensus 140 ~~~k~~~~~~~---~~~~~~~------------------~~~~~----------------------~~~~----p~a~-- 170 (549)
T KOG4660|consen 140 KRIKRPGGARR---AMGLQSG------------------TSFLN----------------------HFGS----PLAN-- 170 (549)
T ss_pred hhhcCCCcccc---cchhccc------------------chhhh----------------------hccc----hhhc--
Confidence 88871110000 0000000 00000 0000 0000
Q ss_pred CCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 186 APINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.....-+...+|+ .|++..+...++..|+.+|.+.. +...-.. .--|++|.+..++..+...+ |..+.
T Consensus 171 --------s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-hq~~~~~~~~~s~a~~~~~~-G~~~s 238 (549)
T KOG4660|consen 171 --------SPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLLN-HQRFVEFADNRSYAFSEPRG-GFLIS 238 (549)
T ss_pred --------CCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccchh-hhhhhhhccccchhhcccCC-ceecC
Confidence 0000001223433 39999999888999999998876 4333111 25788999999997777655 77777
Q ss_pred CCCCCcEEEEEee
Q 023320 266 SSDRGGMHIEYAR 278 (284)
Q Consensus 266 ~~~~~~l~v~~ak 278 (284)
++ ..-++|+.
T Consensus 239 ~~---~~v~t~S~ 248 (549)
T KOG4660|consen 239 NS---SGVITFSG 248 (549)
T ss_pred CC---CceEEecC
Confidence 55 55566654
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=5.1e-11 Score=79.85 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=48.8
Q ss_pred HHHHHHHhc----cCCCceEEE-EEe------eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 215 EDELKQTLS----VYPGFNMLK-MRA------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 215 ~~~L~~~F~----~~G~v~~v~-~~~------~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
+++|+++|+ .||.|.+|. +.. +.+++||||+|.+.++|.+|++.|||..+.|+ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999985 332 34578999999999999999999999999988 7765
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.2e-11 Score=97.58 Aligned_cols=83 Identities=23% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++++.|||-.||.+.++.||..+|-.||.|.+.++.+++-+++. ||||.|.++.+|+.||..|||..|. =+.|+
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG---MKRLK 358 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG---MKRLK 358 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh---hhhhh
Confidence 667899999999999999999999999999999999987655544 9999999999999999999999997 67888
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|+.-+.+.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 88665553
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=5.9e-11 Score=99.62 Aligned_cols=83 Identities=19% Similarity=0.343 Sum_probs=74.4
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCC----cCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG----MPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~----~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
.....||.++|||--|.+-+|++||.-+|+.||.|.++.++++.. -.||||+|++.+++.+|.=+|++..|+++
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr-- 309 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR-- 309 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc--
Confidence 334467899999999999999999999999999999999988433 34999999999999999999999999999
Q ss_pred CcEEEEEeec
Q 023320 270 GGMHIEYARS 279 (284)
Q Consensus 270 ~~l~v~~ak~ 279 (284)
.|+|.|+.+
T Consensus 310 -RIHVDFSQS 318 (479)
T KOG0415|consen 310 -RIHVDFSQS 318 (479)
T ss_pred -eEEeehhhh
Confidence 999999753
No 111
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.14 E-value=1.1e-10 Score=107.02 Aligned_cols=80 Identities=30% Similarity=0.424 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.-.++|||||+|+..++|.||.++|+.||.|++|.++ ..++ ||||.+.+..+|.+|+..|+...+. ++.|+|.
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li-~~R~---cAfI~M~~RqdA~kalqkl~n~kv~---~k~Iki~ 490 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI-PPRG---CAFIKMVRRQDAEKALQKLSNVKVA---DKTIKIA 490 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeec-cCCc---eeEEEEeehhHHHHHHHHHhccccc---ceeeEEe
Confidence 3457999999999999999999999999999999888 5567 9999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
|+..+..
T Consensus 491 Wa~g~G~ 497 (894)
T KOG0132|consen 491 WAVGKGP 497 (894)
T ss_pred eeccCCc
Confidence 9976653
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.13 E-value=1.1e-10 Score=97.86 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=67.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh-CCCccCCCCCCcEEEEEeec
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l-ng~~~~~~~~~~l~v~~ak~ 279 (284)
-++|||+||...++|.+|++.|.+||+|+++++...+ ++|||+|.+.++|+.|.+++ |-..|+|. +|+|.|++.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeecce---EEEEEeCCC
Confidence 6899999999999999999999999999999998866 69999999999999999775 66667766 999999987
No 113
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=3.7e-10 Score=94.71 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=68.6
Q ss_pred CCCCC-CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh-CCCeeCCCCCC
Q 023320 29 QQQDN-GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSGS 106 (284)
Q Consensus 29 ~~~~~-~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~ 106 (284)
.|..+ -..+|||+||-..++|.+|++.|.+||+|.++.+. ..++ ||||+|.+.++|+.|.+.. +...|. |+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~-~~~~---CAFv~ftTR~aAE~Aae~~~n~lvI~---G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRIL-PRKG---CAFVTFTTREAAEKAAEKSFNKLVIN---GF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEee-cccc---cceeeehhhHHHHHHHHhhcceeeec---ce
Confidence 34433 45999999999999999999999999999999887 4455 9999999999999988754 666666 99
Q ss_pred eEEEEEeec
Q 023320 107 VLHIELARS 115 (284)
Q Consensus 107 ~l~v~~a~~ 115 (284)
.|.|.|+..
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999988
No 114
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=4.4e-09 Score=92.81 Aligned_cols=168 Identities=15% Similarity=0.223 Sum_probs=110.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe--e------eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK--Y------TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~--~------~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
-+++||||+||.+++|++|...|..||.+. |.=. . ..+|...|+|..|.++.+...-+.... .. .
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~---~ 330 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EG---E 330 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hc---c
Confidence 358999999999999999999999999872 2111 1 112222399999999888776554322 12 3
Q ss_pred CeEEEEEeecCCCCC-cCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCC
Q 023320 106 SVLHIELARSNSRKK-RKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNA 184 (284)
Q Consensus 106 ~~l~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (284)
..+.+.........+ .+ .-.+...+.. +.
T Consensus 331 ~~~yf~vss~~~k~k~VQ--IrPW~laDs~------------fv------------------------------------ 360 (520)
T KOG0129|consen 331 GNYYFKVSSPTIKDKEVQ--IRPWVLADSD------------FV------------------------------------ 360 (520)
T ss_pred cceEEEEecCccccccee--EEeeEeccch------------hh------------------------------------
Confidence 334444333222111 00 0000000000 00
Q ss_pred CCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhc-cCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHH-
Q 023320 185 VAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLS-VYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEG- 258 (284)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~-~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~- 258 (284)
........+.+|||||+||-.++.++|..+|+ .||.|..|.|-. ++.+|-|=|+|.+..+=.+||.+
T Consensus 361 -------~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 361 -------LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred -------hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 00111234689999999999999999999999 899999888755 56678899999999999999986
Q ss_pred ---hCCCccC
Q 023320 259 ---LQDSTLP 265 (284)
Q Consensus 259 ---lng~~~~ 265 (284)
|+-.+|.
T Consensus 434 Fvql~h~d~~ 443 (520)
T KOG0129|consen 434 FVQLDHTDID 443 (520)
T ss_pred eEEEeccccc
Confidence 4555554
No 115
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=1e-09 Score=73.53 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=48.9
Q ss_pred HHHHHHHhh----cCCCeeEEE-EeeeCCC----CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 49 AREIHNLFR----RKPGFDFCQ-LKYTGRG----NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 49 e~~L~~~F~----~~G~v~~v~-~~~~~~~----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
+++|+++|+ .||.|..|. +.++... .++||||+|.+.++|.+|+..|||..+. |+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~---gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD---GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEe
Confidence 578888888 999999885 5544322 2339999999999999999999999998 998875
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.8e-10 Score=94.84 Aligned_cols=84 Identities=21% Similarity=0.347 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.+|.+.|||=.|.+-+|.+||.-+|+.||.|..|.|+.+.+.+-. ||||+|.+.+++++|.-.|++..|. .+.|+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID---DrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID---DRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec---cceEE
Confidence 667899999999999999999999999999999999976666655 9999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.|+++-+.
T Consensus 313 VDFSQSVsk 321 (479)
T KOG0415|consen 313 VDFSQSVSK 321 (479)
T ss_pred eehhhhhhh
Confidence 999876654
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.8e-09 Score=84.60 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=66.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccC-CCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVY-PGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~-G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
....+||..+|..+.+.++...|.+| |.|.++++-+ +.+++||||+|++.+.|..|-+.||++.|.++ -|.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~---lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH---LLEC 124 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh---eeee
Confidence 46789999999999999999999999 5677888844 77889999999999999999999999999977 8888
Q ss_pred EE
Q 023320 275 EY 276 (284)
Q Consensus 275 ~~ 276 (284)
.|
T Consensus 125 ~v 126 (214)
T KOG4208|consen 125 HV 126 (214)
T ss_pred EE
Confidence 76
No 118
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.97 E-value=4.2e-09 Score=93.70 Aligned_cols=80 Identities=19% Similarity=0.262 Sum_probs=71.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
..++.|||.+|...+-..||+.+|++||.|+-.+++.+ .-++|+||++.+.++|.+||+.|+-++|+|+ .|.|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MISV 479 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eeee
Confidence 34789999999999999999999999999998887762 2345999999999999999999999999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
+-+|+-+
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9998754
No 119
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.95 E-value=2.3e-09 Score=95.29 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=72.3
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCC--CCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
++.|||.+|...+...+|+++|++||.|.-.+|+.+.+ +-.+|+||++.+.++|.+||+.|+...++ |+.|.|+.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH---GrmISVEk 481 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH---GRMISVEK 481 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc---ceeeeeee
Confidence 58899999999999999999999999998888885433 33449999999999999999999999999 99999998
Q ss_pred eecCCCC
Q 023320 113 ARSNSRK 119 (284)
Q Consensus 113 a~~~~~~ 119 (284)
++.....
T Consensus 482 aKNEp~G 488 (940)
T KOG4661|consen 482 AKNEPGG 488 (940)
T ss_pred cccCccc
Confidence 8765543
No 120
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.94 E-value=6.8e-08 Score=84.92 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=57.0
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEeeeCCCCee-EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~-v~~~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
....|-+++||+.||++||.++|+..-.|.. |.+.++.+++.. -|||+|.+.+.|++|+. -+...|. -|-|.|.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iG---hRYIEvF 177 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIG---HRYIEVF 177 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhc---cceEEee
Confidence 4578999999999999999999998766644 445555555543 99999999999999996 3445553 4445554
Q ss_pred Ee
Q 023320 112 LA 113 (284)
Q Consensus 112 ~a 113 (284)
.+
T Consensus 178 ~S 179 (510)
T KOG4211|consen 178 RS 179 (510)
T ss_pred hh
Confidence 44
No 121
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.93 E-value=2.7e-09 Score=86.04 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=112.7
Q ss_pred CCeEEEcCCCCcccHHH-H--HHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 35 INTLFVSGLPDDVRARE-I--HNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~-L--~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.-..+++|+-..+..+- | ...|+.+..+...++..+.-+. .+++|+.|.....-.++-..-+++.+. -+++++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~---~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIG---KPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhcccccccccc---Ccceee
Confidence 35567777666655443 3 6788888777655555322221 119999998877777777666777663 333444
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
--+.+..+-.
T Consensus 173 a~gtswedPs---------------------------------------------------------------------- 182 (290)
T KOG0226|consen 173 AAGTSWEDPS---------------------------------------------------------------------- 182 (290)
T ss_pred ccccccCCcc----------------------------------------------------------------------
Confidence 3332221100
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
...++. ..-.||-+.|...++++-|...|.+|-.+...++++ +++++|+||.|.++.++.+|+..|||.-++.
T Consensus 183 -l~ew~~--~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 183 -LAEWDE--DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred -cccCcc--ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 001111 145799999999999999999999999888776665 6778899999999999999999999999998
Q ss_pred CCCCcEEEE
Q 023320 267 SDRGGMHIE 275 (284)
Q Consensus 267 ~~~~~l~v~ 275 (284)
+ +|++.
T Consensus 260 r---piklR 265 (290)
T KOG0226|consen 260 R---PIKLR 265 (290)
T ss_pred c---hhHhh
Confidence 8 77654
No 122
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.88 E-value=2.3e-09 Score=91.11 Aligned_cols=180 Identities=19% Similarity=0.180 Sum_probs=105.1
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCC----CeeEEEEeeeCCCCe-eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKP----GFDFCQLKYTGRGNQ-VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G----~v~~v~~~~~~~~~~-~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
-.|-+++||+++|+.|+.++|..-. .++.|.+.....|+- +-|||.|..+++|+.|+.. +...+ |+. .|
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~i----GqR-YI 235 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNI----GQR-YI 235 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHH----hHH-HH
Confidence 4577899999999999999997432 334554443222221 1899999999999999974 33334 332 12
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
+.-++......+ ...+... +... .....+......
T Consensus 236 ElFRSTaaEvqq-----------------vlnr~~s--------~pLi-------------~~~~sp~~p~~p------- 270 (508)
T KOG1365|consen 236 ELFRSTAAEVQQ-----------------VLNREVS--------EPLI-------------PGLTSPLLPGGP------- 270 (508)
T ss_pred HHHHHhHHHHHH-----------------HHHhhcc--------cccc-------------CCCCCCCCCCCc-------
Confidence 222222111100 0000000 0000 000000000000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCce-E--EEEEe-eCC--cCeEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFN-M--LKMRA-RGG--MPVAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~-~--v~~~~-~~~--~~~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
..-.....+...|-+++||+..+.|+|.++|..|..-+ . |.|+- .++ .|-|||+|.+.|+|..|....+.+..
T Consensus 271 -~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~m 349 (508)
T KOG1365|consen 271 -ARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLM 349 (508)
T ss_pred -cccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhc
Confidence 00011112256788999999999999999998887322 2 55544 333 45899999999999999999988888
Q ss_pred CCC
Q 023320 265 PSS 267 (284)
Q Consensus 265 ~~~ 267 (284)
..+
T Consensus 350 k~R 352 (508)
T KOG1365|consen 350 KSR 352 (508)
T ss_pred ccc
Confidence 655
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.86 E-value=2.1e-08 Score=70.62 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=63.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccC--CCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC-CCCcEEE
Q 023320 202 STLFIANLGPNCTEDELKQTLSVY--PGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS-DRGGMHI 274 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~-~~~~l~v 274 (284)
+||.|+|||...|.++|.+++... |.+.-+.+.- +.+.|||||.|.+++.|.+-.+.++|..+... ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999987643 4455444433 55578999999999999999999999999744 3458889
Q ss_pred EEeec
Q 023320 275 EYARS 279 (284)
Q Consensus 275 ~~ak~ 279 (284)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 99863
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.86 E-value=5.4e-09 Score=95.17 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=71.6
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-------eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-------~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
.+-.+.|||+||+++++++.|...|..||.|..|+++. .+.+.++||-|.+..+|++|++.|||..+...
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~--- 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY--- 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee---
Confidence 45588999999999999999999999999999999876 33456999999999999999999999999988
Q ss_pred cEEEEEeec
Q 023320 271 GMHIEYARS 279 (284)
Q Consensus 271 ~l~v~~ak~ 279 (284)
.|++.|+|.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999999863
No 125
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=2.7e-09 Score=94.89 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=64.7
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|+|-|||.+|++++|..+|+.||+|+.|++-... ++.+||+|-|+.+|++|+++||+.+|.++ .|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~---~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGK---RIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhh---hhc
Confidence 3457899999999999999999999999999998876632 37999999999999999999999999977 665
No 126
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.81 E-value=2.7e-08 Score=88.10 Aligned_cols=84 Identities=20% Similarity=0.318 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.....+|||+|||.++++++|+++|..||.|....|..+..+.+ +||||+|.+.++++.|++.- -..+. ++.+.
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig---~~kl~ 360 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG---GRKLN 360 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC---CeeEE
Confidence 34456799999999999999999999999998777765432222 59999999999999999865 55555 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|+--+...+.
T Consensus 361 Veek~~~~~g 370 (419)
T KOG0116|consen 361 VEEKRPGFRG 370 (419)
T ss_pred EEeccccccc
Confidence 9976665444
No 127
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.80 E-value=2.1e-08 Score=82.31 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=67.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.++|+|.|||..|+++||+++|..||.++.+-+.. +.+.+.|=|.|...++|.+|++.+||..++|+ .|++...
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR---PMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc---eeeeEEe
Confidence 47899999999999999999999999998888766 55567999999999999999999999999977 8888875
Q ss_pred e
Q 023320 278 R 278 (284)
Q Consensus 278 k 278 (284)
-
T Consensus 160 ~ 160 (243)
T KOG0533|consen 160 S 160 (243)
T ss_pred c
Confidence 3
No 128
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.79 E-value=2.5e-08 Score=78.22 Aligned_cols=84 Identities=19% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcC-CCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRK-PGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~-G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
|.....-.+||+.+|..+.+.+|..+|.+| |.|..+++-.+.|+++. ||||+|.+.+.|.-|-+.||++.+. |+
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---e~ 120 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---EH 120 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh---hh
Confidence 335556779999999999999999999999 55666666433333333 9999999999999999999999998 99
Q ss_pred eEEEEEeecC
Q 023320 107 VLHIELARSN 116 (284)
Q Consensus 107 ~l~v~~a~~~ 116 (284)
.|.|.+-...
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999987655
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.76 E-value=8.9e-09 Score=87.77 Aligned_cols=198 Identities=11% Similarity=0.075 Sum_probs=121.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee-----EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-----VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~-----~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..|-|.||...+|.|+++.||...|.|.++.|.-.-+.-.. .|||.|.|..++.-|.+.-|-..| ++.|.|
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfv----draliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFV----DRALIV 83 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceee----eeeEEE
Confidence 48999999999999999999999999999988732111111 899999999999999875555555 777777
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
-..-....... ..++......... .....+ ..+....++. .-.+...+....+
T Consensus 84 ~p~~~~~~p~r----~af~~l~~~navp----rll~pd-----------g~Lp~~~~lt--------~~nh~p~ailktP 136 (479)
T KOG4676|consen 84 RPYGDEVIPDR----FAFVELADQNAVP----RLLPPD-----------GVLPGDRPLT--------KINHSPNAILKTP 136 (479)
T ss_pred EecCCCCCccH----HHHHhcCcccccc----cccCCC-----------CccCCCCccc--------cccCCccceecCC
Confidence 65422211100 0011000000000 000000 0000000000 0000000000011
Q ss_pred CCC----CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 191 EKP----YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 191 ~~~----~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
... ........+|++|++|+..+...++.++|..+|+|....+..+....+|-|+|...-+...|+. ++|.++.
T Consensus 137 ~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 137 ELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred CCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 111 1111122589999999999999999999999999998888877767789999999999888887 5566654
No 130
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.75 E-value=1.5e-08 Score=86.15 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=123.9
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEee-----eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY-----TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~-----~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....++|++++...+.+.++..++..+|.+..+.... ..++ ++.+.|...+.+..|+......... ++.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~---~~s~~f~~ks~~~~~l~~s~~~~~~---~~~ 159 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKG---GLSVHFAGKSQFFAALEESGSKVLD---GNK 159 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhcccccccc---ceeeccccHHHHHHHHHhhhccccc---ccc
Confidence 3468899999999999998899999999765554431 2333 9999999999999999866554554 444
Q ss_pred EEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCC
Q 023320 108 LHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAP 187 (284)
Q Consensus 108 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (284)
+.............. +.
T Consensus 160 ~~~dl~~~~~~~~~n----------~~----------------------------------------------------- 176 (285)
T KOG4210|consen 160 GEKDLNTRRGLRPKN----------KL----------------------------------------------------- 176 (285)
T ss_pred ccCcccccccccccc----------hh-----------------------------------------------------
Confidence 433332222110000 00
Q ss_pred CCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCc
Q 023320 188 INSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDST 263 (284)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~ 263 (284)
......++.+.++++||+.++++++|+..|..+|.|..+++.. ...++||+|.|.+...+..|+.. +...
T Consensus 177 -----~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~ 250 (285)
T KOG4210|consen 177 -----SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRS 250 (285)
T ss_pred -----cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCc
Confidence 0011112244455999999999999999999999999999877 44567999999999999999998 8888
Q ss_pred cCCCCCCcEEEEEeecc
Q 023320 264 LPSSDRGGMHIEYARSK 280 (284)
Q Consensus 264 ~~~~~~~~l~v~~ak~~ 280 (284)
+.++ ++.|++++.+
T Consensus 251 ~~~~---~~~~~~~~~~ 264 (285)
T KOG4210|consen 251 IGGR---PLRLEEDEPR 264 (285)
T ss_pred ccCc---ccccccCCCC
Confidence 9877 9999988765
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.74 E-value=3.3e-08 Score=90.19 Aligned_cols=87 Identities=20% Similarity=0.279 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee------CCCCeeEEEEEecCHHHHHHHHHHhCCCe
Q 023320 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT------GRGNQVVAFATFVNHQTAVAALHELNGVK 99 (284)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~------~~~~~~~aFV~F~~~~~A~~A~~~l~g~~ 99 (284)
++.+-..+....|||+||+..++|+.|...|.+||+|..++++.. .+... ||||-|-+..+|++|+..|+|+.
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~-cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERN-CGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccc-cceeeehhhhhHHHHHHHhccee
Confidence 333333455678999999999999999999999999999999843 11111 99999999999999999999999
Q ss_pred eCCCCCCeEEEEEeecC
Q 023320 100 FDPQSGSVLHIELARSN 116 (284)
Q Consensus 100 ~~~~~g~~l~v~~a~~~ 116 (284)
+. +..+++.|++.-
T Consensus 244 v~---~~e~K~gWgk~V 257 (877)
T KOG0151|consen 244 VM---EYEMKLGWGKAV 257 (877)
T ss_pred ee---eeeeeecccccc
Confidence 99 999999999643
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.73 E-value=5.9e-08 Score=79.69 Aligned_cols=85 Identities=28% Similarity=0.400 Sum_probs=72.4
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee-EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~-~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
..+|+|.|||+.++++||+++|..||.+..+-+.++..+... .|=|.|...++|..|++.++|..+. |+.|.++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld---G~~mk~~~i 159 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD---GRPMKIEII 159 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC---CceeeeEEe
Confidence 367999999999999999999999999888888866443322 9999999999999999999998887 999999988
Q ss_pred ecCCCCCcC
Q 023320 114 RSNSRKKRK 122 (284)
Q Consensus 114 ~~~~~~~~~ 122 (284)
...+...+.
T Consensus 160 ~~~~~~~r~ 168 (243)
T KOG0533|consen 160 SSPSQSKRL 168 (243)
T ss_pred cCccccccc
Confidence 776655443
No 133
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.65 E-value=3.3e-09 Score=91.23 Aligned_cols=149 Identities=20% Similarity=0.300 Sum_probs=116.9
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
..+|++||...++-++|..+|... |.-..+.+. .+ |+||.+.+..-|.+|++.++|+.-. .|+.+.++..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k---~g---yafvd~pdq~wa~kaie~~sgk~el--qGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK---SG---YAFVDCPDQQWANKAIETLSGKVEL--QGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee---cc---eeeccCCchhhhhhhHHhhchhhhh--cCceeeccch
Confidence 469999999999999999999854 221222232 44 9999999999999999999887643 5888777755
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (284)
..+...
T Consensus 74 v~kkqr-------------------------------------------------------------------------- 79 (584)
T KOG2193|consen 74 VPKKQR-------------------------------------------------------------------------- 79 (584)
T ss_pred hhHHHH--------------------------------------------------------------------------
Confidence 443221
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCc-CeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGM-PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~-~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
.+.+-|+|+|+..-.+-|..+..+||.++.|..+..++. ...-|+|.+.+.+..||.+|||..+..- .+
T Consensus 80 -------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~ 149 (584)
T KOG2193|consen 80 -------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HL 149 (584)
T ss_pred -------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hh
Confidence 334668999999999999999999999998876553221 2456899999999999999999999865 77
Q ss_pred EEEE
Q 023320 273 HIEY 276 (284)
Q Consensus 273 ~v~~ 276 (284)
+|.|
T Consensus 150 k~~Y 153 (584)
T KOG2193|consen 150 KVGY 153 (584)
T ss_pred hccc
Confidence 7777
No 134
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.65 E-value=1.9e-07 Score=62.71 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=47.4
Q ss_pred CeEEEeCCCCCCCHHH----HHHHhccCCC-ceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 202 STLFIANLGPNCTEDE----LKQTLSVYPG-FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~----L~~~F~~~G~-v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+.|||.|||.+.+... |+.++..+|+ |..| . + +.|+|.|.+.+.|.+|.+.|+|..+.|. +|.|+|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-~---~tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-G---GTAILRFPNQEFAERAQKRMEGEDVFGN---KISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T---T-EEEEESSHHHHHHHHHHHTT--SSSS-----EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-C---CEEEEEeCCHHHHHHHHHhhcccccccc---eEEEEE
Confidence 5799999999887764 5567778885 4444 2 2 5799999999999999999999999977 999999
Q ss_pred eec
Q 023320 277 ARS 279 (284)
Q Consensus 277 ak~ 279 (284)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 844
No 135
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=2.7e-08 Score=79.95 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=66.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
.+||++||..+.+.+|..+|..||.+..+.|..+ |+||+|.+..+|.-|+..|||..|.+. .+.|+|++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g----f~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMKNG----FGFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceeecc----cceeccCchhhhhcccchhcCceecce---eeeeeccccc
Confidence 5899999999999999999999999999998765 689999999999999999999999977 6999999854
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.63 E-value=2.9e-09 Score=98.89 Aligned_cols=137 Identities=20% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEee-----eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY-----TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~-----~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..++||+||+..+.+.+|...|+.+|.+..+++.+ +-+| +|||+|.+.++|.+|+...++..+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG---~~Y~~F~~~~~~~aaV~f~d~~~~----g---- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRG---KAYVEFLKPEHAGAAVAFRDSCFF----G---- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcccccc---ceeeEeecCCchhhhhhhhhhhhh----h----
Confidence 35789999999999999999999999886665541 1233 999999999999999985554444 3
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
+
T Consensus 736 ------------K------------------------------------------------------------------- 736 (881)
T KOG0128|consen 736 ------------K------------------------------------------------------------------- 736 (881)
T ss_pred ------------h-------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
..|+|+|+|+.-|.++|+.+|+.+|.+.+++++. +..++.|||.|.+..+|.+++..+++..+..
T Consensus 737 ------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 737 ------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 1488999999999999999999999999887655 5556799999999999999998888887775
Q ss_pred CCCCcEEEEE
Q 023320 267 SDRGGMHIEY 276 (284)
Q Consensus 267 ~~~~~l~v~~ 276 (284)
. .+.|..
T Consensus 805 ~---~~~v~v 811 (881)
T KOG0128|consen 805 N---NGEVQV 811 (881)
T ss_pred c---Cccccc
Confidence 5 555544
No 137
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.60 E-value=1e-07 Score=84.41 Aligned_cols=75 Identities=20% Similarity=0.320 Sum_probs=62.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..+|||+|||.+++.++|+++|..||.|+...|... .+.+||||+|.+.++++.|+++- -..|+++ +|.|+-
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~---kl~Vee 363 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR---KLNVEE 363 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe---eEEEEe
Confidence 456999999999999999999999999998887652 22269999999999999999876 5556655 888886
Q ss_pred eec
Q 023320 277 ARS 279 (284)
Q Consensus 277 ak~ 279 (284)
-+.
T Consensus 364 k~~ 366 (419)
T KOG0116|consen 364 KRP 366 (419)
T ss_pred ccc
Confidence 554
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.1e-08 Score=79.22 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.+||||+|+-..++|+.|.++|-+-|.|..|.|..++ ...||||.|.+.-+..-|++.|||..+.+. .++|++-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhcccc
Confidence 7899999999999999999999999999999998722 223999999999999999999999999987 8888763
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.56 E-value=1.5e-07 Score=77.44 Aligned_cols=78 Identities=15% Similarity=0.284 Sum_probs=70.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
...+.+||+|+++.+|.+++...|+.+|.+..|.+.. +..++|+||+|.+.+.+..|+. |||..|.++ .+.|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~---~i~v 174 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP---AIEV 174 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccc---ccee
Confidence 4478999999999999999999999999999888766 3456799999999999999999 999999988 9999
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
++.+-+
T Consensus 175 t~~r~~ 180 (231)
T KOG4209|consen 175 TLKRTN 180 (231)
T ss_pred eeeeee
Confidence 998755
No 140
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.54 E-value=2.1e-07 Score=67.07 Aligned_cols=59 Identities=19% Similarity=0.369 Sum_probs=40.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
..|+|.|++..++.++|+++|+.||.|..|++..+. ..|+|.|.+.++|++|++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 578999999999999999999999999999988755 68999999999999999988544
No 141
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.53 E-value=1.1e-05 Score=74.04 Aligned_cols=73 Identities=18% Similarity=0.215 Sum_probs=60.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEEe-eCC--cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGF-NMLKMRA-RGG--MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v-~~v~~~~-~~~--~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+++|-+.|+|++++-+||.++|..|--+ .+|++.. +++ .+-|-|-|++.++|.+|...|++..|..+ +|+|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR---VVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce---eEEEEe
Confidence 4689999999999999999999999744 3555555 333 34899999999999999999999999988 777653
No 142
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.51 E-value=3.4e-07 Score=77.19 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=66.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCce--------EEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFN--------MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~--------~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
++.|||.|||.++|.+++.++|+.+|.|. .|++.+ +.-||-|.+.|.-.|+..-|++.|++..|.|+
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~-- 211 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK-- 211 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc--
Confidence 67799999999999999999999999664 366666 44467899999999999999999999999977
Q ss_pred CcEEEEEeec
Q 023320 270 GGMHIEYARS 279 (284)
Q Consensus 270 ~~l~v~~ak~ 279 (284)
.|+|+-|+=
T Consensus 212 -~~rVerAkf 220 (382)
T KOG1548|consen 212 -KLRVERAKF 220 (382)
T ss_pred -EEEEehhhh
Confidence 999998863
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.51 E-value=1.3e-06 Score=61.62 Aligned_cols=81 Identities=23% Similarity=0.349 Sum_probs=62.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeeCC--CCeeEEEEEecCHHHHHHHHHHhCCCeeCCC-CCCeEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGR--GNQVVAFATFVNHQTAVAALHELNGVKFDPQ-SGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~~~~~~~--~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~-~g~~l~v 110 (284)
.||.|+|+|...|.++|.+++... |..+.+-+.++.+ .+.+||||.|.+++.|.+..+.++|..+..- ..+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 489999999999999999887643 4556666666533 3344999999999999999999999999411 3667777
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.||+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 777644
No 144
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.47 E-value=2.2e-07 Score=79.43 Aligned_cols=82 Identities=17% Similarity=0.272 Sum_probs=67.7
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..++|||++||.++++++|++.|++||.|..+.++++.....+ |+||+|.+.+++++++. ..-..|. |+.+.|.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~---gk~vevk 171 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN---GKKVEVK 171 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeec---CceeeEe
Confidence 4679999999999999999999999999988888866433333 99999999999999985 4555665 8999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
.|.++...
T Consensus 172 rA~pk~~~ 179 (311)
T KOG4205|consen 172 RAIPKEVM 179 (311)
T ss_pred eccchhhc
Confidence 88766543
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=5.1e-06 Score=55.93 Aligned_cols=70 Identities=23% Similarity=0.330 Sum_probs=48.6
Q ss_pred CeEEEcCCCCcccHHH----HHHHhhcCCC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDVRARE----IHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~----L~~~F~~~G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..|+|.|||.+.+-.. |++++..+|. |..| . .+ .|+|.|.+.+.|.+|.+-|+|..++ |+.|.+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~---~~---tAilrF~~~~~A~RA~KRmegEdVf---G~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S---GG---TAILRFPNQEFAERAQKRMEGEDVF---GNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT----EEEEESSHHHHHHHHHHHTT--SS---SS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e---CC---EEEEEeCCHHHHHHHHHhhcccccc---cceEEE
Confidence 4699999999988775 5678889987 4333 2 45 8999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.|....
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 987433
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.27 E-value=9.4e-07 Score=71.60 Aligned_cols=75 Identities=19% Similarity=0.353 Sum_probs=66.1
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
-+||.|.|..+++.+.|-+.|.+|-.....+++.+.|.++. |+||.|.+..++..|+.+|+|..+. .++|.+.-+
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg---srpiklRkS 267 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG---SRPIKLRKS 267 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc---cchhHhhhh
Confidence 57999999999999999999999998887888766666655 9999999999999999999999997 778777643
No 147
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.20 E-value=3.8e-06 Score=69.21 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....+.+||+|+.+.+|.+++...|+.||.|..+.+..+.-.+ +.||||+|.+.+.+..|+. |+|..|. |+.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~---~~~i~ 173 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP---GPAIE 173 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc---cccce
Confidence 4456889999999999999999999999999877666432221 3399999999999999998 9999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
+.+.+.+...
T Consensus 174 vt~~r~~~pg 183 (231)
T KOG4209|consen 174 VTLKRTNVPG 183 (231)
T ss_pred eeeeeeecCC
Confidence 9988776433
No 148
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=1.7e-05 Score=72.84 Aligned_cols=194 Identities=9% Similarity=-0.033 Sum_probs=112.9
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
....+-+.+.++...+.|++++|-.- .|..+.|..+ .+...+.++|+|....++.+|++..+-..+ .|.+.+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~----~R~~q~~ 384 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDV----NRPFQTG 384 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhh----hcceeec
Confidence 34556677999999999999998633 2444444422 222223899999999999999874333333 6777766
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
.+......... .+. ..... ......+.... ..+......+++
T Consensus 385 P~g~~~~~~a~----~~~----------------~~~~~-~~~~~~hg~p~----------------~~pr~~~~~gq~- 426 (944)
T KOG4307|consen 385 PPGNLGRNGAP----PFQ----------------AGVPP-PVIQNNHGRPI----------------APPRAMVRPGQN- 426 (944)
T ss_pred CCCccccccCc----ccc----------------ccCCC-CcccccCCCCC----------------CCcccccCCCCC-
Confidence 44322211111 000 00000 00000000000 000000000000
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceE-EEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
..-....+..|||..||..+++.++.++|+..-.|++ |.+-. +..++.|||.|..++++..|..--+-..++-+
T Consensus 427 --vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r 504 (944)
T KOG4307|consen 427 --VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHR 504 (944)
T ss_pred --CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCce
Confidence 0011123778999999999999999999998888877 44433 55567999999999999998865555556544
Q ss_pred CCCcEEEE
Q 023320 268 DRGGMHIE 275 (284)
Q Consensus 268 ~~~~l~v~ 275 (284)
.|+|.
T Consensus 505 ---~irv~ 509 (944)
T KOG4307|consen 505 ---IIRVD 509 (944)
T ss_pred ---EEEee
Confidence 66664
No 149
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.11 E-value=9e-06 Score=58.65 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=38.0
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
..|.|.|++..++-++|++.|+.||.|..|.+. +|.. .|||.|.+.++|+.|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~---~G~~-~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFS---RGDT-EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE-----TT-S-EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEec---CCCC-EEEEEECCcchHHHHHHHHH
Confidence 468999999999999999999999999998888 3333 89999999999999998763
No 150
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.89 E-value=0.0003 Score=60.54 Aligned_cols=160 Identities=17% Similarity=0.153 Sum_probs=96.2
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcC----CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRK----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
...+.+..|-.++||..-+..+|-.+|..- |.+.-|... . +.+.++|.|.|.+.|.-+-|++. +...+. +
T Consensus 55 ~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~-q-grRnge~lvrf~d~e~RdlalkR-hkhh~g---~ 128 (508)
T KOG1365|consen 55 HSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNA-Q-GRRNGEALVRFVDPEGRDLALKR-HKHHMG---T 128 (508)
T ss_pred cccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehh-h-hccccceEEEecCchhhhhhhHh-hhhhcc---C
Confidence 345566778889999999999999999753 222222221 1 11122999999999998888863 223332 5
Q ss_pred CeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCC
Q 023320 106 SVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAV 185 (284)
Q Consensus 106 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (284)
+.|.+--+....--+-. .+.. .+... +.
T Consensus 129 ryievYka~ge~f~~ia--gg~s-------------------------~e~~~--------------fl----------- 156 (508)
T KOG1365|consen 129 RYIEVYKATGEEFLKIA--GGTS-------------------------NEAAP--------------FL----------- 156 (508)
T ss_pred CceeeeccCchhheEec--CCcc-------------------------ccCCC--------------CC-----------
Confidence 65555433222111100 0000 00000 00
Q ss_pred CCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCC----CceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHH
Q 023320 186 APINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP----GFNMLKMRA---RGGMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G----~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~ 258 (284)
+. ..--.|-+++||++.++.|+.++|.+-. +.+.|-++. ++-.|-|||.|..+++|+.|+.+
T Consensus 157 --------sk---~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 157 --------SK---ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred --------Cc---ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 00 0023455899999999999999996332 444454444 44456899999999999999964
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.84 E-value=4e-05 Score=47.88 Aligned_cols=52 Identities=8% Similarity=0.213 Sum_probs=42.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHH
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAM 256 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~ 256 (284)
+.|-|.+.+.+.. +++...|..||+|..+.+... .++.+|+|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 5688889998765 455558889999998877633 379999999999999995
No 152
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.82 E-value=3.9e-05 Score=64.77 Aligned_cols=76 Identities=11% Similarity=0.301 Sum_probs=62.6
Q ss_pred cCeEEEeCCCCCCCHHHH------HHHhccCCCceEEEEEeeCC-----cCe--EEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 201 CSTLFIANLGPNCTEDEL------KQTLSVYPGFNMLKMRARGG-----MPV--AFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L------~~~F~~~G~v~~v~~~~~~~-----~~~--afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+-+||-+|++.+-.|++ .++|.+||.|..+.+.++-+ .+. .||+|.+-|+|.+||.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 556899999999888873 24899999999988876331 112 49999999999999999999999988
Q ss_pred CCCcEEEEEeec
Q 023320 268 DRGGMHIEYARS 279 (284)
Q Consensus 268 ~~~~l~v~~ak~ 279 (284)
.|+..|+-.
T Consensus 194 ---~lkatYGTT 202 (480)
T COG5175 194 ---VLKATYGTT 202 (480)
T ss_pred ---eEeeecCch
Confidence 999998743
No 153
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.81 E-value=1.7e-05 Score=64.53 Aligned_cols=67 Identities=16% Similarity=0.302 Sum_probs=59.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee------------CCcC----eEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR------------GGMP----VAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~------------~~~~----~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
..+||++|||+.+...-|+++|+.||.|-+|.+... .++. -|.|+|.+-..|.+..+.|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 578999999999999999999999999999998661 1111 389999999999999999999999
Q ss_pred CCC
Q 023320 265 PSS 267 (284)
Q Consensus 265 ~~~ 267 (284)
+|+
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 977
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.78 E-value=7.3e-05 Score=46.71 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=41.5
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHH
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAAL 92 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~ 92 (284)
+.|-|.+.+.+..+. +...|+.||+|..+.+. ...+ +.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~---~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTN---WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCc---EEEEEECCHHHHHhhC
Confidence 568889998876654 55588899999887776 2344 9999999999999985
No 155
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.76 E-value=3.9e-05 Score=69.31 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccC-CCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVY-PGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~-G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
...++++|||.||---+|.-.|+.++..- |.|+...| +.-|..|||.|.+.++|..-+.+|||..+...+.+.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 44568999999999999999999999954 45666643 3334679999999999999999999999998888899999
Q ss_pred Eee
Q 023320 276 YAR 278 (284)
Q Consensus 276 ~ak 278 (284)
|+.
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 975
No 156
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.74 E-value=0.00012 Score=55.15 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=54.0
Q ss_pred CCCCCcCeEEEeCCC-----CCCCHH----HHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 196 GGVQPCSTLFIANLG-----PNCTED----ELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~-----~~~t~~----~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
..+||..|+.|.=+. ....++ +|.+.|..||++.-|++..+. -+|+|.+-++|.+|+. |+|.++.|
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~~----mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGDT----MWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETTC----EEEEESSCHHHHHHHH-GCCSEETT
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCCe----EEEEECccHHHHHHHc-cCCcEECC
Confidence 345677788876555 223344 677799999999988888765 8999999999999997 99999997
Q ss_pred CCCCcEEEEEe
Q 023320 267 SDRGGMHIEYA 277 (284)
Q Consensus 267 ~~~~~l~v~~a 277 (284)
+ .|+|.+-
T Consensus 97 ~---~l~i~LK 104 (146)
T PF08952_consen 97 R---TLKIRLK 104 (146)
T ss_dssp E---EEEEEE-
T ss_pred E---EEEEEeC
Confidence 7 9988763
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.72 E-value=0.00012 Score=51.95 Aligned_cols=79 Identities=8% Similarity=0.055 Sum_probs=54.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEE-E----------EeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-M----------RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~----------~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
.+.|.|=+.|+. .-..+.+.|++||+|.+.. + ....+.++.-|+|++..+|++||. -||..|.|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~-- 81 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS-- 81 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC--
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc--
Confidence 456777788888 5678889999999997664 0 112334799999999999999997 799999843
Q ss_pred CcEEEEEeeccccC
Q 023320 270 GGMHIEYARSKMRK 283 (284)
Q Consensus 270 ~~l~v~~ak~~~~~ 283 (284)
--+-|.+.++..+.
T Consensus 82 ~mvGV~~~~~~~~~ 95 (100)
T PF05172_consen 82 LMVGVKPCDPADEQ 95 (100)
T ss_dssp EEEEEEE-HHHHCC
T ss_pred EEEEEEEcHHhHHH
Confidence 34557777665554
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.61 E-value=0.00012 Score=61.84 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=60.1
Q ss_pred CeEEEcCCCCcccHHH----H--HHHhhcCCCeeEEEEeeeCCCC-----eeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 36 NTLFVSGLPDDVRARE----I--HNLFRRKPGFDFCQLKYTGRGN-----QVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~----L--~~~F~~~G~v~~v~~~~~~~~~-----~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
+-+||-+||..+..++ | .++|.+||.|..|.|..+.... +.-.||+|.+.|+|.+||...+|..++
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D--- 191 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD--- 191 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc---
Confidence 5689999999876665 3 3899999999888776321111 102399999999999999999999998
Q ss_pred CCeEEEEEee
Q 023320 105 GSVLHIELAR 114 (284)
Q Consensus 105 g~~l~v~~a~ 114 (284)
||.|+..|..
T Consensus 192 Gr~lkatYGT 201 (480)
T COG5175 192 GRVLKATYGT 201 (480)
T ss_pred CceEeeecCc
Confidence 9999998875
No 159
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.58 E-value=0.00055 Score=46.22 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG 97 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g 97 (284)
....+|. +|..+...||.++|+.||.|.---|. .+ .|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TT---EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CC---cEEEEeecHHHHHHHHHHhcc
Confidence 4556666 99999999999999999998433333 56 899999999999999988763
No 160
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.55 E-value=0.00064 Score=50.62 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCCCCCCCCCeEEEcCCCCcc----cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 27 HHQQQDNGINTLFVSGLPDDV----RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 27 ~~~~~~~~~~~lfV~nLp~~~----te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
--..-.+|-.||.|+=|...+ +...+...++.||+|++|.+.. +. .|.|.|.|..+|.+|+.+++...-
T Consensus 78 kk~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rq---savVvF~d~~SAC~Av~Af~s~~p-- 150 (166)
T PF15023_consen 78 KKNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQ---SAVVVFKDITSACKAVSAFQSRAP-- 150 (166)
T ss_pred cccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--Cc---eEEEEehhhHHHHHHHHhhcCCCC--
Confidence 334447788999998666553 2224456778999999998873 33 899999999999999999987444
Q ss_pred CCCCeEEEEEeecCC
Q 023320 103 QSGSVLHIELARSNS 117 (284)
Q Consensus 103 ~~g~~l~v~~a~~~~ 117 (284)
|..+++.|.+...
T Consensus 151 --gtm~qCsWqqrFM 163 (166)
T PF15023_consen 151 --GTMFQCSWQQRFM 163 (166)
T ss_pred --CceEEeecccccc
Confidence 8999999876543
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.54 E-value=0.00013 Score=65.64 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=58.3
Q ss_pred cCeEEEeCCCC--CCCHH----HHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc
Q 023320 201 CSTLFIANLGP--NCTED----ELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271 (284)
Q Consensus 201 ~~~L~v~nL~~--~~t~~----~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~ 271 (284)
.++|+|-|+|. ....+ -|..+|+++|.+..+.+.. ++.+||.|++|.+..+|+.|++.|||..|+ -.|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--knHt 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--KNHT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--ccce
Confidence 67899999994 22223 4556999999998888764 567889999999999999999999999998 2456
Q ss_pred EEEE
Q 023320 272 MHIE 275 (284)
Q Consensus 272 l~v~ 275 (284)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6554
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.52 E-value=0.00012 Score=63.85 Aligned_cols=66 Identities=21% Similarity=0.245 Sum_probs=56.3
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---------C--------CcCeEEEEeCCHHHHHHHHHHhC
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---------G--------GMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---------~--------~~~~afV~f~~~e~A~~A~~~ln 260 (284)
+.+.+||.+-|||.+-.-+-|.++|+.+|.|..|++... . .+-+|+|+|+..+.|.+|.+.||
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 356899999999999999999999999999999998652 0 13379999999999999999885
Q ss_pred CCc
Q 023320 261 DST 263 (284)
Q Consensus 261 g~~ 263 (284)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 544
No 163
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.49 E-value=0.00018 Score=68.14 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=73.2
Q ss_pred CCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
+...+..-++.++||++|+.++....|...|..||.|..|.+. .+++||+|+|.+...|+.|++.|.|..+ ..-.
T Consensus 446 glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq~yayi~yes~~~aq~a~~~~rgap~-G~P~ 520 (975)
T KOG0112|consen 446 GLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQPYAYIQYESPPAAQAATHDMRGAPL-GGPP 520 (975)
T ss_pred cccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCCcceeeecccCccchhhHHHHhcCcC-CCCC
Confidence 3334466778999999999999999999999999999877664 4556999999999999999999999999 4446
Q ss_pred CeEEEEEeecCC
Q 023320 106 SVLHIELARSNS 117 (284)
Q Consensus 106 ~~l~v~~a~~~~ 117 (284)
+.+++.++....
T Consensus 521 ~r~rvdla~~~~ 532 (975)
T KOG0112|consen 521 RRLRVDLASPPG 532 (975)
T ss_pred cccccccccCCC
Confidence 678898887554
No 164
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.00034 Score=58.14 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=58.3
Q ss_pred cCeEEEeCCCC--CCC---HHHHHHHhccCCCceEEEEEeeCCcC-----eEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 201 CSTLFIANLGP--NCT---EDELKQTLSVYPGFNMLKMRARGGMP-----VAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 201 ~~~L~v~nL~~--~~t---~~~L~~~F~~~G~v~~v~~~~~~~~~-----~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
+++|.++|.-- .++ ++++++-+++||.|.+|.+.-.-+-+ -.||+|+..++|.+|+-.|||+.|+|+
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr--- 357 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR--- 357 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce---
Confidence 56677777642 333 44788899999999999887632222 589999999999999999999999988
Q ss_pred cEEEEEe
Q 023320 271 GMHIEYA 277 (284)
Q Consensus 271 ~l~v~~a 277 (284)
.++.+|-
T Consensus 358 ~v~A~Fy 364 (378)
T KOG1996|consen 358 VVSACFY 364 (378)
T ss_pred eeeheec
Confidence 8888774
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.00016 Score=63.04 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee------CCCC---------eeEEEEEecCHHHHHHHHHHhC
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT------GRGN---------QVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~------~~~~---------~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
=++++|.+-|||.+-..+.|.++|+.+|.|..|+|+.. .++. +-||+|+|...+.|.+|.+.++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 37899999999999888999999999999999998832 1111 1199999999999999999874
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.41 E-value=0.00024 Score=60.78 Aligned_cols=80 Identities=13% Similarity=0.105 Sum_probs=66.5
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEE--------EEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNML--------KMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v--------~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
..-..+|||-+|+..+++.+|..+|.++|.|..- .+.+ ...|+-|.|+|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 3447899999999999999999999999966432 1211 445678999999999999999999999999
Q ss_pred CCCCCcEEEEEeecc
Q 023320 266 SSDRGGMHIEYARSK 280 (284)
Q Consensus 266 ~~~~~~l~v~~ak~~ 280 (284)
+ ++|+|.+|..+
T Consensus 143 g---n~ikvs~a~~r 154 (351)
T KOG1995|consen 143 G---NTIKVSLAERR 154 (351)
T ss_pred C---CCchhhhhhhc
Confidence 5 59999998755
No 167
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.39 E-value=0.00034 Score=63.43 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++.|+|.||=..+|.-+|+.++.+-|. |.+..|- .-+. .|||.|.+.++|....+.|+|..|-.+.++.|.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-kIKS---hCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~a 516 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-KIKS---HCYVSYSSVEEAAATREALHNVQWPPSNPKHLIA 516 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-Hhhc---ceeEecccHHHHHHHHHHHhccccCCCCCceeEe
Confidence 566899999999999999999999996554 5444222 0133 8999999999999999999999996557999999
Q ss_pred EEeecCC
Q 023320 111 ELARSNS 117 (284)
Q Consensus 111 ~~a~~~~ 117 (284)
.|.....
T Consensus 517 df~~~de 523 (718)
T KOG2416|consen 517 DFVRADE 523 (718)
T ss_pred eecchhH
Confidence 9986544
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.34 E-value=0.0016 Score=53.25 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=63.5
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee-EEEEEecCHHHHHHHHHHh--CCCeeCCCCCCeEEEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV-VAFATFVNHQTAVAALHEL--NGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~-~aFV~F~~~~~A~~A~~~l--~g~~~~~~~g~~l~v~~ 112 (284)
..|||.||..-+..|.|.+.|+.||.|+...++.+++++.. -++|+|...-.|.+|.... .|.-+ ...+++..|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~-~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG-TTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc-CCCCCccCCCh
Confidence 67999999999999999999999999988877777776655 8999999999999999876 33222 33466666665
Q ss_pred eecC
Q 023320 113 ARSN 116 (284)
Q Consensus 113 a~~~ 116 (284)
....
T Consensus 111 ~eq~ 114 (275)
T KOG0115|consen 111 MEQP 114 (275)
T ss_pred hhcc
Confidence 4433
No 169
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00079 Score=60.26 Aligned_cols=66 Identities=23% Similarity=0.293 Sum_probs=55.0
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhh-cCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHH
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFR-RKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHE 94 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~ 94 (284)
...-++.+|||||+||.-++.++|-.+|+ -||.|..+-|-.+.+-+-+ -|=|+|.+..+=.+||+.
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34477899999999999999999999999 7999988877755222222 899999999999999974
No 170
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.31 E-value=0.00018 Score=61.35 Aligned_cols=85 Identities=15% Similarity=0.241 Sum_probs=69.6
Q ss_pred CCCCCCeEE-EcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 31 QDNGINTLF-VSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 31 ~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
...+..++| |+||++.+++++|+..|..+|.|..+++.-....... +|||.|.+..++..++.. +...+. +++
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~---~~~ 255 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIG---GRP 255 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCccc---Ccc
Confidence 355666777 9999999999999999999999988888743333332 999999999999999987 888887 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
+.+.+.......
T Consensus 256 ~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 256 LRLEEDEPRPKS 267 (285)
T ss_pred cccccCCCCccc
Confidence 999987666443
No 171
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.23 E-value=0.00031 Score=61.22 Aligned_cols=74 Identities=23% Similarity=0.281 Sum_probs=57.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc-cCCCCCCcEEEEEeecc
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST-LPSSDRGGMHIEYARSK 280 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~-~~~~~~~~l~v~~ak~~ 280 (284)
+.|||+||.+.++..||..+|...---.+-.++.+. +|+||.+.+...|.+|++.++|.. +.|+ ++.|+++..+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~--gyafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKS--GYAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeec--ceeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhhH
Confidence 369999999999999999999754222222233333 699999999999999999999986 6655 9999887443
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.23 E-value=0.00016 Score=59.09 Aligned_cols=59 Identities=19% Similarity=0.268 Sum_probs=47.9
Q ss_pred HHHHHHhc-cCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 216 DELKQTLS-VYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 216 ~~L~~~F~-~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
|+|...|+ +||+|+++.+-. ..-.+-++|.|...|+|++|++.|||..+.|+ +|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC---cceeeec
Confidence 45555666 999999886544 22245699999999999999999999999988 9998875
No 173
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.23 E-value=0.00047 Score=59.03 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=66.9
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCee--------EEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCee
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD--------FCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
....+.+|||.+||..+++++|..+|.++|.|. .|.|..+.++. +.-|.|.|.+..+|+.|+..+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 366678999999999999999999999999882 12222111111 12899999999999999999999999
Q ss_pred CCCCCCeEEEEEeecCC
Q 023320 101 DPQSGSVLHIELARSNS 117 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~~~ 117 (284)
. +..|+|..+....
T Consensus 142 ~---gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 C---GNTIKVSLAERRT 155 (351)
T ss_pred c---CCCchhhhhhhcc
Confidence 7 8899998887665
No 174
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.23 E-value=0.0022 Score=47.80 Aligned_cols=80 Identities=24% Similarity=0.353 Sum_probs=59.1
Q ss_pred CCCCCCcCeEEEeCCCCCCC-HHHHH---HHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 195 EGGVQPCSTLFIANLGPNCT-EDELK---QTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 195 ~~~~~~~~~L~v~nL~~~~t-~~~L~---~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
....+|-.||.|+=|..++. .+||+ .-.+.||.|++|.+...+ .|.|.|.+..+|-+|+.+++. ...|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgt--- 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGT--- 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCc---
Confidence 33456778888877766543 33444 467899999999987654 699999999999999999987 44444
Q ss_pred cEEEEEeeccc
Q 023320 271 GMHIEYARSKM 281 (284)
Q Consensus 271 ~l~v~~ak~~~ 281 (284)
.+..+|-..=|
T Consensus 153 m~qCsWqqrFM 163 (166)
T PF15023_consen 153 MFQCSWQQRFM 163 (166)
T ss_pred eEEeecccccc
Confidence 77777754433
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.22 E-value=0.00021 Score=58.31 Aligned_cols=68 Identities=12% Similarity=0.244 Sum_probs=56.6
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC---------CCCee-----EEEEEecCHHHHHHHHHHhCCCe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG---------RGNQV-----VAFATFVNHQTAVAALHELNGVK 99 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~---------~~~~~-----~aFV~F~~~~~A~~A~~~l~g~~ 99 (284)
..-.||++|+|+.++-..|+++|+.||.|-.|-+--.+ +++.. -|.|+|.+...|+.+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45789999999999999999999999999877665211 11111 68999999999999999999999
Q ss_pred eC
Q 023320 100 FD 101 (284)
Q Consensus 100 ~~ 101 (284)
|.
T Consensus 153 Ig 154 (278)
T KOG3152|consen 153 IG 154 (278)
T ss_pred cC
Confidence 96
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.12 E-value=0.0034 Score=44.62 Aligned_cols=71 Identities=21% Similarity=0.197 Sum_probs=49.1
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEE------------EeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQ------------LKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~------------~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
...|-|=+.|.. ....+.+.|++||.|.+.. -.....+ .--|+|.++.+|.+||. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~N---Wi~I~Y~~~~~A~rAL~-~NG~i~~- 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGN---WIHITYDNPLSAQRALQ-KNGTIFS- 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTT---EEEEEESSHHHHHHHHT-TTTEEET-
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCC---EEEEECCCHHHHHHHHH-hCCeEEc-
Confidence 456888899988 5567788999999986654 1223344 99999999999999996 7999996
Q ss_pred CCCCeE-EEEEe
Q 023320 103 QSGSVL-HIELA 113 (284)
Q Consensus 103 ~~g~~l-~v~~a 113 (284)
|..| -|.++
T Consensus 80 --g~~mvGV~~~ 89 (100)
T PF05172_consen 80 --GSLMVGVKPC 89 (100)
T ss_dssp --TCEEEEEEE-
T ss_pred --CcEEEEEEEc
Confidence 6544 35555
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.0034 Score=40.22 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=44.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCC---CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYP---GFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G---~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
...|+|++++. ++.++|+.+|..|. ...+|.-+.+. -|-|.|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 45799999965 78899999999992 34567766664 4999999999999999876
No 178
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=97.12 E-value=0.00056 Score=64.50 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=67.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
+...+.++.|.+-+.+-..|..+|+.||.|.+.+..++. ++|.|+|.+.+.|..|+++|+|+++--- |.+.+|.|||
T Consensus 296 plqp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~--N~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL--NMALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhcccccchHHHHHHHHHhhcchhhheecccc--cchhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEecc
Confidence 334566777777888888999999999999999998866 6899999999999999999999998755 6699999997
Q ss_pred c
Q 023320 279 S 279 (284)
Q Consensus 279 ~ 279 (284)
-
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 4
No 179
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.11 E-value=0.017 Score=41.90 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
+.......+.+...|+.++-++|..+.+.+-. |..++++.+...++--+.+.|.+.++|......+||+.+........
T Consensus 8 ~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~C 87 (110)
T PF07576_consen 8 PDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETC 87 (110)
T ss_pred CCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCcee
Confidence 44455667777778888888888877777755 67778885555555589999999999999999999999964444444
Q ss_pred EEEEe
Q 023320 109 HIELA 113 (284)
Q Consensus 109 ~v~~a 113 (284)
+|-|.
T Consensus 88 hvvfV 92 (110)
T PF07576_consen 88 HVVFV 92 (110)
T ss_pred EEEEE
Confidence 44443
No 180
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.06 E-value=0.0024 Score=43.18 Aligned_cols=56 Identities=14% Similarity=0.242 Sum_probs=43.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD 261 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng 261 (284)
..+.||. .|..+...||.++|+.||.|.---+-.. -|||...+.+.|..|+..+.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 5677786 9999999999999999999864444433 499999999999999999864
No 181
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.05 E-value=3.4e-05 Score=72.48 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=102.8
Q ss_pred CeEEEcCCCCcccHH-HHHHHhhcCCCeeEEEEee-eCC-CCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 36 NTLFVSGLPDDVRAR-EIHNLFRRKPGFDFCQLKY-TGR-GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 36 ~~lfV~nLp~~~te~-~L~~~F~~~G~v~~v~~~~-~~~-~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+...+.|+.+..... ..+..|..+|.|+.|++-- ..+ ..++++++++....+++.|.. ..|.-+. ++.+.+..
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a---~~~~av~~ 647 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALA---NRSAAVGL 647 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccC---CccccCCC
Confidence 456667776665555 5678999999999887762 111 112378888888888877764 3333333 44433332
Q ss_pred eecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCC
Q 023320 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEK 192 (284)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (284)
+......... .
T Consensus 648 ad~~~~~~~~---------------------------------------------------------------------k 658 (881)
T KOG0128|consen 648 ADAEEKEENF---------------------------------------------------------------------K 658 (881)
T ss_pred CCchhhhhcc---------------------------------------------------------------------C
Confidence 2211100000 0
Q ss_pred CCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEE----eeCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 193 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR----ARGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 193 ~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~----~~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
...+....-.++||+||+..+.+++|...|+.+|.+..+++. .++-+|+|+|.|..+++|.+||....+..++
T Consensus 659 vs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 659 VSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 000000114578999999999999999999999988776654 3666789999999999999999876666655
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.95 E-value=0.0043 Score=46.87 Aligned_cols=73 Identities=26% Similarity=0.341 Sum_probs=51.8
Q ss_pred CCCCCeEEEcCCC-----C-cccH---HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 32 DNGINTLFVSGLP-----D-DVRA---REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 32 ~~~~~~lfV~nLp-----~-~~te---~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
.++-.||.|.=+. . ..++ ++|.+.|+.||.|.-+++. .+ .-.|+|.+-++|-+|+. ++|..+.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv---~~---~mwVTF~dg~sALaals-~dg~~v~- 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV---GD---TMWVTFRDGQSALAALS-LDGIQVN- 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE---TT---CEEEEESSCHHHHHHHH-GCCSEET-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe---CC---eEEEEECccHHHHHHHc-cCCcEEC-
Confidence 3345566665444 1 2332 2677889999999888877 55 79999999999999995 9999998
Q ss_pred CCCCeEEEEEee
Q 023320 103 QSGSVLHIELAR 114 (284)
Q Consensus 103 ~~g~~l~v~~a~ 114 (284)
|+.|+|..-.
T Consensus 96 --g~~l~i~LKt 105 (146)
T PF08952_consen 96 --GRTLKIRLKT 105 (146)
T ss_dssp --TEEEEEEE--
T ss_pred --CEEEEEEeCC
Confidence 9999998643
No 183
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.89 E-value=0.0028 Score=52.86 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCCCeeEEEEeee---CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 49 AREIHNLFRRKPGFDFCQLKYT---GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 49 e~~L~~~F~~~G~v~~v~~~~~---~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
++++++.+++||.|..|.|.-. ......--||+|...++|.+|+-.|||..|. ||.++..|-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG---Gr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG---GRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec---ceeeeheec
Confidence 3467899999999988877632 1111227899999999999999999999998 998887764
No 184
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.84 E-value=0.00081 Score=57.27 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=65.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCC--CceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.-.+||+||-+-+|++||.+.....| .+.+++++. +++||||+|-..+..+..+-++.|--+.|+|. ++.-+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ--~P~V~ 157 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ--SPTVL 157 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC--CCeee
Confidence 45789999999999999999988877 333444332 77899999999999999999999999999954 56667
Q ss_pred EEeeccccC
Q 023320 275 EYARSKMRK 283 (284)
Q Consensus 275 ~~ak~~~~~ 283 (284)
.|-|....+
T Consensus 158 ~~NK~~~ak 166 (498)
T KOG4849|consen 158 SYNKTNQAK 166 (498)
T ss_pred ccchhhHHH
Confidence 776665443
No 185
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.0057 Score=55.50 Aligned_cols=74 Identities=18% Similarity=0.305 Sum_probs=56.3
Q ss_pred CeEEEcCCCCc--ccHH----HHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 36 NTLFVSGLPDD--VRAR----EIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 36 ~~lfV~nLp~~--~te~----~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..|+|.|.|.- ...+ .|..+|+++|.+....+.++-.|+ .+|.|++|.+..+|+.|++.|||+.++ ...++
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld--knHtf 136 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD--KNHTF 136 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec--ccceE
Confidence 78999999974 2222 345899999998777776554433 339999999999999999999999996 34455
Q ss_pred EEE
Q 023320 109 HIE 111 (284)
Q Consensus 109 ~v~ 111 (284)
.+.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 554
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.83 E-value=0.00063 Score=55.67 Aligned_cols=60 Identities=20% Similarity=0.368 Sum_probs=47.2
Q ss_pred HHHHHhh-cCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 51 EIHNLFR-RKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 51 ~L~~~F~-~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
+|...|+ +||+|+++.|. +..+.+. -+||.|...++|++|++.||+..+. |++|..++..
T Consensus 84 d~f~E~~~kygEiee~~Vc-~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~---G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVC-DNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN---GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhh-cccchhhhhhhhhhcccHHHHHHHHHHHcCcccc---CCcceeeecC
Confidence 4444555 89999888666 2111111 7999999999999999999999998 9999999874
No 187
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.74 E-value=0.0064 Score=49.90 Aligned_cols=63 Identities=16% Similarity=0.223 Sum_probs=50.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEE-EEeeCC--cCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLK-MRARGG--MPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~~~~--~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.|||.||..-++.+.|.+.|+.||.|.+-. ++.+.+ .+-++|+|...-.|.+|+..++-.-+.
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~ 98 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFG 98 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccc
Confidence 599999999999999999999999987543 444333 347999999999999999988444433
No 188
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.73 E-value=0.059 Score=39.09 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=56.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcC--eEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMP--VAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~--~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
....+.+...|..++-++|..+.+.+- .|..++++++...+ ++.++|.+.++|.+=.+..||+.+..-....-+|-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Chvv 90 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVV 90 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEE
Confidence 356677777777888888877776666 45677887754323 89999999999999999999999875433333333
No 189
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.70 E-value=0.0026 Score=58.75 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=69.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEE
Q 023320 1 MAHPPYDPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFA 80 (284)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV 80 (284)
|||+|-+|..+.-..-.| +.+|++ .-.++.++.-++||+|+.+.+..+-++.+...+|.|-+++... |||+
T Consensus 8 ~a~~P~~~~~~~~~~~~p-~~~p~q-p~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~ 78 (668)
T KOG2253|consen 8 AAGMPMMPQVPMVGNGVP-YVVPIQ-PVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFC 78 (668)
T ss_pred CCCCCCCCCCccccCCcc-cccCCc-ccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hccc
Confidence 455555555443332222 222221 1123355678899999999999999999999999986654441 9999
Q ss_pred EecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 81 TFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 81 ~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+|....-+..|+..+.-..+. |..+....
T Consensus 79 ~f~~~~~~~ra~r~~t~~~~~---~~kl~~~~ 107 (668)
T KOG2253|consen 79 EFLKHIGDLRASRLLTELNID---DQKLIENV 107 (668)
T ss_pred chhhHHHHHHHHHHhcccCCC---cchhhccc
Confidence 999999999999988887776 66555543
No 190
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.66 E-value=0.0032 Score=49.93 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=52.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhcc-CCCc---eEEEEEe-e----C-CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSV-YPGF---NMLKMRA-R----G-GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~-~G~v---~~v~~~~-~----~-~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
...|.|++||+++|++++.+.++. +++- ..+.-.. . . ...-|+|.|.+.++...-...++|..+.+.-|+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 568999999999999999998887 7765 3443222 1 1 112699999999999999999999888766233
Q ss_pred --cEEEEEe
Q 023320 271 --GMHIEYA 277 (284)
Q Consensus 271 --~l~v~~a 277 (284)
.-.|+||
T Consensus 87 ~~~~~VE~A 95 (176)
T PF03467_consen 87 EYPAVVEFA 95 (176)
T ss_dssp EEEEEEEE-
T ss_pred CcceeEEEc
Confidence 5567776
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.64 E-value=0.0027 Score=50.37 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhc-CCCe---eEEEEeeeCCCC----eeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRR-KPGF---DFCQLKYTGRGN----QVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~-~G~v---~~v~~~~~~~~~----~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
....+|.|++||+.+||+++++.++. ++.- ..+.-....... -.-|||.|.+.+++......++|..|....
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999988876 6654 233322221111 128999999999999999999999986333
Q ss_pred CC--eEEEEEeec
Q 023320 105 GS--VLHIELARS 115 (284)
Q Consensus 105 g~--~l~v~~a~~ 115 (284)
|. ...|++|-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 33 445555533
No 192
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.32 E-value=0.0015 Score=55.65 Aligned_cols=76 Identities=9% Similarity=0.190 Sum_probs=61.5
Q ss_pred cCeEEEeCCCCCCCHHHHHH---HhccCCCceEEEEEeeC----C---cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQ---TLSVYPGFNMLKMRARG----G---MPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~---~F~~~G~v~~v~~~~~~----~---~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
.+-+||-+|+..+-++.+.+ .|.+||.|..|.+.++. + ..-++|+|...|+|.+||...+|..++++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~--- 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR--- 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---
Confidence 35578888998877776665 89999999999887743 1 12599999999999999999999999988
Q ss_pred cEEEEEeec
Q 023320 271 GMHIEYARS 279 (284)
Q Consensus 271 ~l~v~~ak~ 279 (284)
.|+.+|+-.
T Consensus 154 ~lka~~gtt 162 (327)
T KOG2068|consen 154 ALKASLGTT 162 (327)
T ss_pred hhHHhhCCC
Confidence 788777643
No 193
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.24 E-value=0.03 Score=35.93 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=41.3
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcC----CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRK----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (284)
..|+|+|+.. ++.++|+.+|..| ++. .|.-+ + .. .|=|.|.+.+.|.+|+..|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~-~IEWI-d-Dt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPF-RIEWI-D-DT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCc-eEEEe-c-CC---cEEEEECCHHHHHHHHHcC
Confidence 4699999865 7888999999999 543 34333 2 33 6999999999999999764
No 194
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.10 E-value=0.0075 Score=52.33 Aligned_cols=66 Identities=14% Similarity=0.324 Sum_probs=53.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe--eCC-----cCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGG-----MPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~-----~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
..+|-|.||.+++|.+.+..+|.-.|.|..++++. +.. ...|||.|.+...+..|-. |.++++=++
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdr 79 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDR 79 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeee
Confidence 34899999999999999999999999999999887 222 1289999999999887765 666665544
No 195
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.04 E-value=0.041 Score=36.86 Aligned_cols=66 Identities=21% Similarity=0.364 Sum_probs=40.9
Q ss_pred eEEEeCCC--CCCCHHHHHHHhccCCCc-----eEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 203 TLFIANLG--PNCTEDELKQTLSVYPGF-----NMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 203 ~L~v~nL~--~~~t~~~L~~~F~~~G~v-----~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+||| |+. ..++..+|..++..-+++ -.+++... |+||+-... .|.++++.|++..+.|+ .++|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk---~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGK---KVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCe---eEEEE
Confidence 5676 666 478999999999888754 45665544 699998765 78899999999999988 99988
Q ss_pred Ee
Q 023320 276 YA 277 (284)
Q Consensus 276 ~a 277 (284)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.75 E-value=0.021 Score=45.46 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=45.9
Q ss_pred CHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC--CCccCCCCCCcEEEEEee
Q 023320 214 TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ--DSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 214 t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln--g~~~~~~~~~~l~v~~ak 278 (284)
..+.|+++|..|+.+..+..++.- +-..|.|.+.++|.+|+..|+ +..+.|+ .++|-|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcc
Confidence 457899999999999888877743 359999999999999999999 9999977 89999884
No 197
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.70 E-value=0.012 Score=50.42 Aligned_cols=72 Identities=8% Similarity=-0.002 Sum_probs=54.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCe--eEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGF--DFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v--~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
-++|||||-.++|.+||.+.....|-- .++++.-+.-+++ +||+|...+..+.++-|+.|-.+.|+ |+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH---GQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH---GQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec---CCCCee
Confidence 568999999999999999888877753 4444442222222 29999999999999999999999998 664444
No 198
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.45 E-value=0.16 Score=40.52 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=44.2
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC--CCeeCCCCCCeEEEEEeecC
Q 023320 48 RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN--GVKFDPQSGSVLHIELARSN 116 (284)
Q Consensus 48 te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g~~l~v~~a~~~ 116 (284)
..+.|+++|..|+.+....+. +.-+ -..|.|.+.++|.+|...|+ +..+. |..+++.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFr-Ri~v~f~~~~~A~~~r~~l~~~~~~~~---g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFR-RIRVVFESPESAQRARQLLHWDGTSFN---GKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTT-EEEEE-SSTTHHHHHHHTST--TSEET---TEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCC-EEEEEeCCHHHHHHHHHHhcccccccC---CCceEEEEcccc
Confidence 446899999999998666665 2222 58999999999999999999 99998 999999998444
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.22 E-value=0.23 Score=32.32 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.1
Q ss_pred cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 46 DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 46 ~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++.++|+..+..|+-. +|+.+ +. ==||.|.+.++|++|....+|..+. +..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d-~t---GfYIvF~~~~Ea~rC~~~~~~~~~f---~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDD-RT---GFYIVFNDSKEAERCFRAEDGTLFF---TYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEec-CC---EEEEEECChHHHHHHHHhcCCCEEE---EEEEEe
Confidence 47888999999999743 45533 33 2699999999999999999999986 555443
No 200
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.11 E-value=0.5 Score=42.21 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=58.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcC--eEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMP--VAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~--~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+++.|+|=.+|.-+|--||..++..+- .|..++++++...+ ++.|+|.+.++|..-.+.+||..|..-
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~l 143 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSL 143 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCC
Confidence 3388999999999999999999987665 57788888843322 799999999999999999999998855
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.04 E-value=0.018 Score=49.17 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=58.1
Q ss_pred CeEEEcCCCCcc-cHHHHH--HHhhcCCCeeEEEEeeeC-----CCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 36 NTLFVSGLPDDV-RAREIH--NLFRRKPGFDFCQLKYTG-----RGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 36 ~~lfV~nLp~~~-te~~L~--~~F~~~G~v~~v~~~~~~-----~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
+-+||-+|+... +|..|+ +.|.+||.|..|.+..+. .+..+-++|+|...++|..||...+|.... |+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d---g~~ 154 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD---GRA 154 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh---hhh
Confidence 567888898875 444554 689999999888766322 222338999999999999999999999998 888
Q ss_pred EEEEEee
Q 023320 108 LHIELAR 114 (284)
Q Consensus 108 l~v~~a~ 114 (284)
++..+..
T Consensus 155 lka~~gt 161 (327)
T KOG2068|consen 155 LKASLGT 161 (327)
T ss_pred hHHhhCC
Confidence 7766654
No 202
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.98 E-value=0.38 Score=32.15 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=36.3
Q ss_pred cccHHHHHHHhhcCCCe-----eEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 46 DVRAREIHNLFRRKPGF-----DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 46 ~~te~~L~~~F~~~G~v-----~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
.++..+|..++..-+.| -.|++. .+ |+||+-.. +.|..++..|++..+. |+.+.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~---~S~vev~~-~~a~~v~~~l~~~~~~---gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF---DN---FSFVEVPE-EVAEKVLEALNGKKIK---GKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE----SS----EEEEE-T-T-HHHHHHHHTT--SS---S----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe---ee---EEEEEECH-HHHHHHHHHhcCCCCC---CeeEEEEEC
Confidence 36778888888877664 566666 66 99999876 4899999999999998 999999864
No 203
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.62 E-value=0.23 Score=45.42 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=48.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhcc--CCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSV--YPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~--~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
.++++|+-|+..+..|+++-+|+. +-.+++|.+--.. -.||+|++..||+.|.+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHH
Confidence 678889999999999999999975 5678888876654 3899999999999998665
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.52 E-value=0.63 Score=41.63 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+..|+|-.+|..+|-.||..++..+-. |..++++.++-.++--..|.|++.++|....+.+||..|........++-|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~V 153 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLYV 153 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEEE
Confidence 889999999999999999998886644 7888888544444448999999999999999999999996443334444443
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.51 E-value=0.056 Score=51.64 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=60.9
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeecCC
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNS 117 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 117 (284)
.++-|.+-..+-..|.-+|++||.|.+++-. ++-+ .|.|+|...+.|..|+..++|+++ .-.|-+.+|-+++.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtl-r~~N---~alvs~~s~~sai~a~dAl~gkev-s~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTL-RDLN---MALVSFSSVESAILALDALQGKEV-SVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheec-cccc---chhhhhHHHHHHHHhhhhhcCCcc-cccCCceeEEeccccc
Confidence 3444555567777889999999999888776 3344 899999999999999999999998 4558889999987544
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.81 E-value=0.16 Score=42.84 Aligned_cols=63 Identities=6% Similarity=-0.034 Sum_probs=49.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
...+=|-+.++.- ..-|...|++||+|.....-. .-++-.|.|.+.-+|++||. -||+.|++-
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhh-hcCeeeccc
Confidence 5566677888763 467888999999997766553 33699999999999999997 578888743
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.80 E-value=0.41 Score=31.18 Aligned_cols=52 Identities=13% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 211 PNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 211 ~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
..++-++++..+..|+ ..+|..-+.+ =||.|.+.++|.++.+..||..+.+.
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~d~tG----fYIvF~~~~Ea~rC~~~~~~~~~f~y 61 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRDDRTG----FYIVFNDSKEAERCFRAEDGTLFFTY 61 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEecCCE----EEEEECChHHHHHHHHhcCCCEEEEE
Confidence 3678899999999995 4445544333 58999999999999999999998855
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=91.77 E-value=0.062 Score=44.73 Aligned_cols=80 Identities=19% Similarity=0.342 Sum_probs=56.7
Q ss_pred cCeEEEeCCCCC------------CCHHHHHHHhccCCCceEEEEEe---------eCC-----cCe---------EEEE
Q 023320 201 CSTLFIANLGPN------------CTEDELKQTLSVYPGFNMLKMRA---------RGG-----MPV---------AFAD 245 (284)
Q Consensus 201 ~~~L~v~nL~~~------------~t~~~L~~~F~~~G~v~~v~~~~---------~~~-----~~~---------afV~ 245 (284)
..|||+.+||.. -+++-|+.+|+.||+|..|++.. ++. ++| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 457888888743 46778999999999999888642 111 122 5688
Q ss_pred eCCHHHHHHHHHHhCCCccCCCC-CC----cEEEEEeecc
Q 023320 246 FEEVEQASIAMEGLQDSTLPSSD-RG----GMHIEYARSK 280 (284)
Q Consensus 246 f~~~e~A~~A~~~lng~~~~~~~-~~----~l~v~~ak~~ 280 (284)
|.....-..|+.+|.|.++--++ ++ .++|.|.+++
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 88878888888888888766552 22 6788887764
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.28 E-value=0.45 Score=44.53 Aligned_cols=67 Identities=16% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 196 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
...++..++||+|+-..+..+-++.+...+|-|.+..... |||..|..+.-+.+|+..|+-..+++.
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3445688999999999999999999999999887766443 899999999999999999988888766
No 210
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.02 E-value=0.15 Score=45.64 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred CeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 36 NTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 36 ~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
+.|-+.-.|+. -|..+|...|.+||.|..|.+.+. -. .|.|+|.+..+|-+|-. ..+..|. +|.|+|.|..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~---~a~vTF~t~aeag~a~~-s~~avln---nr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SL---HAVVTFKTRAEAGEAYA-SHGAVLN---NRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc-hh---hheeeeeccccccchhc-cccceec---CceeEEEEec
Confidence 34444445555 356689999999999999999854 23 79999999999977753 6888888 9999999987
Q ss_pred cCC
Q 023320 115 SNS 117 (284)
Q Consensus 115 ~~~ 117 (284)
...
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 643
No 211
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=90.43 E-value=0.83 Score=41.96 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=49.5
Q ss_pred CeEEEcCCCCcccHHHHHHHhhc--CCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh-------CCCeeC
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRR--KPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL-------NGVKFD 101 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~--~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l-------~g~~~~ 101 (284)
+.|.++-+|..+.+|+++.||+. +..+.+|.+-..+ -=||+|.+..+|++|...| +|+.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 55778999999999999999984 6677788877433 5799999999999998654 666663
No 212
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.17 E-value=0.68 Score=39.24 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=42.0
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
|=|-++|.. ...-|.++|++||.|.....- ...+ +-.|.|.+.-+|.+||. .+|..|.
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~-~ngN---wMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP-SNGN---WMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecC-CCCc---eEEEEecchhHHHHhhh-hcCeeec
Confidence 334466654 334577899999998544332 2222 99999999999999995 7999985
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.81 E-value=14 Score=31.52 Aligned_cols=81 Identities=10% Similarity=0.148 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC---------CCCeeEEEEEecCHHHHHHHHH----HhCCCee
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG---------RGNQVVAFATFVNHQTAVAALH----ELNGVKF 100 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~---------~~~~~~aFV~F~~~~~A~~A~~----~l~g~~~ 100 (284)
.+|.|...|+..+++.-.+..-|.+||+|++|.+.-+. .+.+....+.|-+.+.+-.... .|....-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999998322 1122389999999998865432 2221111
Q ss_pred CCCCCCeEEEEEeec
Q 023320 101 DPQSGSVLHIELARS 115 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~ 115 (284)
...-..|.+.+..-
T Consensus 94 -~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 94 -KLKSESLTLSFVSL 107 (309)
T ss_pred -hcCCcceeEEEEEE
Confidence 01155667766643
No 214
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.13 E-value=3.1 Score=38.61 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=59.8
Q ss_pred CCcCeEEEeCCCC-CCCHHHHHHHhccCC----CceEEEEEee------------CC-----------------------
Q 023320 199 QPCSTLFIANLGP-NCTEDELKQTLSVYP----GFNMLKMRAR------------GG----------------------- 238 (284)
Q Consensus 199 ~~~~~L~v~nL~~-~~t~~~L~~~F~~~G----~v~~v~~~~~------------~~----------------------- 238 (284)
.++++|-|-||++ .+.-+||+-+|+.|- .|.+|.|... .+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 3478899999998 688899999988764 5778877541 00
Q ss_pred --------------cC--eEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 239 --------------MP--VAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 239 --------------~~--~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.. ||.|+|.+++.|....+.++|..+... ++.|-+.|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeee
Confidence 11 899999999999999999999999977 44444443
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.39 E-value=1.3 Score=30.69 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=20.6
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhc
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLS 223 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~ 223 (284)
..++|.|.|||..+++++|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 378899999999999999998543
No 216
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.20 E-value=0.5 Score=42.46 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=56.2
Q ss_pred cCeEEEeCCCCCC-CHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 201 CSTLFIANLGPNC-TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 201 ~~~L~v~nL~~~~-t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.|-+.-.+..+ |-++|...|.+||.|..+.+-.. ---|.|+|.+.-+|-+|-. .+|..|+++ .|+|-|=+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchhc-cccceecCc---eeEEEEec
Confidence 4556666666643 55789999999999998887653 1259999999999977753 789999988 99998854
No 217
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.62 E-value=2.4 Score=37.45 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=46.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHH
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (284)
-+.|=|.++|.....+||...|+.|++- .++|+--++. .||..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 3789999999999999999999999874 4455534456 899999999999999974
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.82 E-value=6 Score=36.79 Aligned_cols=82 Identities=21% Similarity=0.240 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCCc-ccHHHHHHHhhcC---C-CeeEEEEeee-------------CC---------------------
Q 023320 32 DNGINTLFVSGLPDD-VRAREIHNLFRRK---P-GFDFCQLKYT-------------GR--------------------- 72 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~---G-~v~~v~~~~~-------------~~--------------------- 72 (284)
..++++|-|=||..+ +...+|.-+|+.| | .|.+|.|... +.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 567899999999988 7888998888765 3 5777776521 00
Q ss_pred ---------CC------eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 73 ---------GN------QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 73 ---------~~------~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
.. --||.|+|.+++.|....+..+|..+ ...|..+-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~Ef-EsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEF-ESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCccee-ccccceeeeeecC
Confidence 00 01999999999999999999999999 4445566666653
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.99 E-value=8.3 Score=32.63 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=36.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHH
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQ 86 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~ 86 (284)
.-|+++||+.++.-.||+..+.+-|-+- +.+..+|...-||.+|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~p---m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTP---MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCc---eeEeeecCCcceeEecCCcc
Confidence 5699999999999999999998877552 22333555448999998753
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=75.26 E-value=4.9 Score=29.44 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=25.0
Q ss_pred cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHH
Q 023320 48 RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQT 87 (284)
Q Consensus 48 te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~ 87 (284)
+.++|.+.|+.|.++ .++.....+++.+++.|+|...-+
T Consensus 30 ~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~ 68 (116)
T PF03468_consen 30 SNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWS 68 (116)
T ss_dssp -SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHH
T ss_pred CHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChH
Confidence 456899999999988 466666666666699999987654
No 221
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.11 E-value=1.1 Score=37.62 Aligned_cols=66 Identities=17% Similarity=0.324 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCcc------------cHHHHHHHhhcCCCeeEEEEee--------eCCCC----eeE---------EEEE
Q 023320 35 INTLFVSGLPDDV------------RAREIHNLFRRKPGFDFCQLKY--------TGRGN----QVV---------AFAT 81 (284)
Q Consensus 35 ~~~lfV~nLp~~~------------te~~L~~~F~~~G~v~~v~~~~--------~~~~~----~~~---------aFV~ 81 (284)
-.||++.+||-.| +++-|+..|+.||.|..|.|.+ .++.. ++| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 3578888888643 5678999999999997776652 22221 112 4566
Q ss_pred ecCHHHHHHHHHHhCCCee
Q 023320 82 FVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 82 F~~~~~A~~A~~~l~g~~~ 100 (284)
|..----..||..|.|..+
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777777766
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=72.45 E-value=3 Score=32.82 Aligned_cols=74 Identities=8% Similarity=0.088 Sum_probs=51.2
Q ss_pred cCeEEEeCCCCCCCHH-----HHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 201 CSTLFIANLGPNCTED-----ELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~-----~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+++++-+++..+..+ ...++|.+|-+..-.++++.. +..-|.|.+++.|..|.-.++++.|.++ +.++.=
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~~--~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNGK--NELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCCC--ceEEEE
Confidence 4567777787654332 445577777766555555432 4677999999999999999999999955 355555
Q ss_pred Eee
Q 023320 276 YAR 278 (284)
Q Consensus 276 ~ak 278 (284)
|+.
T Consensus 86 faQ 88 (193)
T KOG4019|consen 86 FAQ 88 (193)
T ss_pred Ecc
Confidence 543
No 223
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=71.45 E-value=3.4 Score=41.69 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=24.9
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
.++++|--+-..+..+.|+.+.+.++...++..+
T Consensus 72 ak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~ 105 (2365)
T COG5178 72 AKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTK 105 (2365)
T ss_pred hhheeeeccCCCCCHHHHHhhhCccccchhhhhh
Confidence 4567777777778888999998888776555444
No 224
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=70.74 E-value=0.74 Score=42.25 Aligned_cols=65 Identities=18% Similarity=0.224 Sum_probs=52.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.++||++|++++++.++|..+|+.+-.+.++-+.. +.-..++.|+|+---.-..|+.+|||..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 57899999999999999999999999998887655 222237899998777777777778777765
No 225
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=70.49 E-value=46 Score=28.99 Aligned_cols=74 Identities=12% Similarity=0.016 Sum_probs=40.7
Q ss_pred CeEEEcCCCCcccHHHHH-----------HHhhcCCCe-eEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 36 NTLFVSGLPDDVRAREIH-----------NLFRRKPGF-DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~-----------~~F~~~G~v-~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
+.|.|| +.|.-|..+|+ -+.++||-- +.|.+..+... --+.-.+..-..+||.-|=..--
T Consensus 65 rAvLiG-INY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~----s~~~~PT~~Nir~Al~wLV~~aq--- 136 (362)
T KOG1546|consen 65 RAVLIG-INYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE----SPVRIPTGKNIRRALRWLVESAQ--- 136 (362)
T ss_pred eEEEEe-ecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC----cccccCcHHHHHHHHHHHHhcCC---
Confidence 456665 77887888886 345678864 55555544333 22333444555556554411111
Q ss_pred CCCeEEEEEeecCC
Q 023320 104 SGSVLHIELARSNS 117 (284)
Q Consensus 104 ~g~~l~v~~a~~~~ 117 (284)
.|-.|.+.|+-.-.
T Consensus 137 ~gD~LvfHYSGHGt 150 (362)
T KOG1546|consen 137 PGDSLVFHYSGHGT 150 (362)
T ss_pred CCCEEEEEecCCCC
Confidence 15677777765443
No 226
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=69.60 E-value=21 Score=22.32 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=43.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCH----HHHHHHHHHh
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEV----EQASIAMEGL 259 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~----e~A~~A~~~l 259 (284)
|+.|.|+...--...+.+.++..-+|.++.+.... +.+-|+|... ++..++|+.+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~--~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET--KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC--CEEEEEEecCCCCHHHHHHHHHHh
Confidence 67889999988899999999999999999876644 5788888744 5666666653
No 227
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.76 E-value=6.5 Score=38.10 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=6.9
Q ss_pred EEcCCCCcccHHH
Q 023320 39 FVSGLPDDVRARE 51 (284)
Q Consensus 39 fV~nLp~~~te~~ 51 (284)
.+-.||+..+-..
T Consensus 606 maPvlP~gLkpKK 618 (1102)
T KOG1924|consen 606 MAPVLPFGLKPKK 618 (1102)
T ss_pred ccccCCCCCCccc
Confidence 3445666655543
No 228
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=68.21 E-value=3.1 Score=34.10 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=31.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
.++.++||+-|+|..+|++.|.++.+..|.++.+.+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 4567899999999999999999999999987655443
No 229
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.26 E-value=7 Score=29.74 Aligned_cols=34 Identities=18% Similarity=-0.071 Sum_probs=28.7
Q ss_pred eEEEeCCCCC-CCHHHHHHHhccCCCceEEEEEee
Q 023320 203 TLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRAR 236 (284)
Q Consensus 203 ~L~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~ 236 (284)
-|-|.|||.. .+++-|+.+-+.+|.+..++....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 4558899975 788899999999999999997763
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.16 E-value=13 Score=31.64 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=57.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-----------CcCeEEEEeCCHHHHHHH----HHHhCCCc
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-----------GMPVAFADFEEVEQASIA----MEGLQDST 263 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-----------~~~~afV~f~~~e~A~~A----~~~lng~~ 263 (284)
-..+.|.+.|+..+++--.+..-|-+||.|++|.++.+. ......+.|-+.+.+..- ++.|+..+
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999999999998744 123788999998887543 33343332
Q ss_pred --cCCCCCCcEEEEEee
Q 023320 264 --LPSSDRGGMHIEYAR 278 (284)
Q Consensus 264 --~~~~~~~~l~v~~ak 278 (284)
+... .|+|+|..
T Consensus 93 ~~L~S~---~L~lsFV~ 106 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVS 106 (309)
T ss_pred HhcCCc---ceeEEEEE
Confidence 4444 67777653
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.82 E-value=8.2 Score=28.26 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=24.5
Q ss_pred eEEEeCCCC---------CCCHHHHHHHhccCCCceEEEEEee-CCcCeEEEEeCCHH
Q 023320 203 TLFIANLGP---------NCTEDELKQTLSVYPGFNMLKMRAR-GGMPVAFADFEEVE 250 (284)
Q Consensus 203 ~L~v~nL~~---------~~t~~~L~~~F~~~G~v~~v~~~~~-~~~~~afV~f~~~e 250 (284)
++.|-|++. .++.++|++.|+.|..++..-+... ...++++|+|.+--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCCh
Confidence 455667753 3567899999999998864444442 23469999997643
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=61.46 E-value=1e+02 Score=26.30 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=37.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCH
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEV 249 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~ 249 (284)
.+-||++||+-++...||+..+..-|.+ -..+..+...+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCc
Confidence 5669999999999999999999886543 34455565567799999764
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.69 E-value=26 Score=22.47 Aligned_cols=19 Identities=16% Similarity=0.252 Sum_probs=15.0
Q ss_pred HHHHHHhhcCCCeeEEEEe
Q 023320 50 REIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 50 ~~L~~~F~~~G~v~~v~~~ 68 (284)
.+|+++|+..|.|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 4799999999999655444
No 234
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=58.91 E-value=13 Score=36.14 Aligned_cols=8 Identities=38% Similarity=0.667 Sum_probs=3.7
Q ss_pred EEEcCCCC
Q 023320 38 LFVSGLPD 45 (284)
Q Consensus 38 lfV~nLp~ 45 (284)
-|.|+-|.
T Consensus 590 g~~Gg~pp 597 (1102)
T KOG1924|consen 590 GFLGGPPP 597 (1102)
T ss_pred CCCCCCCC
Confidence 44454443
No 235
>PF14893 PNMA: PNMA
Probab=58.83 E-value=9.1 Score=33.57 Aligned_cols=79 Identities=16% Similarity=0.295 Sum_probs=47.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhh----cCCCeeEEEEe---eeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFR----RKPGFDFCQLK---YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~----~~G~v~~v~~~---~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
-++-+.|.|.++|.+|++++|++.+. ..|.. +|. +....+..-|+|+|...-+ .++ --..| ++.
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~y---rvl~~~f~~~~~~~aalve~~e~~n--~~~---iP~~i-~g~ 85 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRY---RVLGKMFRREENAKAALVEFAEDVN--YSL---IPREI-PGK 85 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccc---eehhhHhhhhcccceeeeecccccc--hhh---Cchhc-CCC
Confidence 46678899999999999999887654 45543 232 1222222289999975322 221 12233 445
Q ss_pred CCeEEEEEeecCCCC
Q 023320 105 GSVLHIELARSNSRK 119 (284)
Q Consensus 105 g~~l~v~~a~~~~~~ 119 (284)
|...+|-+-....+.
T Consensus 86 gg~W~Vv~~p~~~D~ 100 (331)
T PF14893_consen 86 GGPWRVVFKPPAPDA 100 (331)
T ss_pred CCceEEEecCCCCCH
Confidence 778887766554443
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=58.67 E-value=15 Score=32.49 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=49.9
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeeCCC----CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRG----NQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~~~~~~----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
-..|.|.+||...++.+|.+-...|-. |....+.-.+.+ ....|||.|...++.......++|+.+..+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~Kg 82 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDNKG 82 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecCCC
Confidence 467899999999999999877776543 222222201000 11189999999999888888899999974445
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.60 E-value=23 Score=31.55 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=44.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCce-EEEEEeeCCcCeEEEEeCCHHHHHHHHHH
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRARGGMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~-~v~~~~~~~~~~afV~f~~~e~A~~A~~~ 258 (284)
..+|=|-|+|...-.+||..+|+.|++-- +|.-+.+ ..||-.|.+...|..||..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd---thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD---THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec---ceeEEeecchHHHHHHhhc
Confidence 57899999999999999999999998532 3333333 3699999999999999864
No 238
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=57.10 E-value=56 Score=21.86 Aligned_cols=62 Identities=8% Similarity=0.218 Sum_probs=43.1
Q ss_pred EEEcCCCCcccHHHHHHHh-------hcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee
Q 023320 38 LFVSGLPDDVRAREIHNLF-------RRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F-------~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
|-.++||..+|.++|...- ..+.+|..++-.+....++.||+.+=.|.++..++-+. .|...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 4567899989999886544 44556767766666555666888888888777776654 37665
No 239
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=56.33 E-value=52 Score=29.53 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=57.6
Q ss_pred CCCcCeEEEeCCCC-CCCHHHHHHHhccCC----CceEEEEEee------------------------------------
Q 023320 198 VQPCSTLFIANLGP-NCTEDELKQTLSVYP----GFNMLKMRAR------------------------------------ 236 (284)
Q Consensus 198 ~~~~~~L~v~nL~~-~~t~~~L~~~F~~~G----~v~~v~~~~~------------------------------------ 236 (284)
..+...|-|-||++ .+.-.+|+.+|+.|. .+..|.|...
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 45578899999998 678889999988764 4555555320
Q ss_pred ----------------CC-----------------cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 237 ----------------GG-----------------MPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 237 ----------------~~-----------------~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+ -=||.|++.+++.+.....+++|.++... .+.+-+.|
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~s-an~~DLRf 294 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENS-ANVLDLRF 294 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccc-cceeeeee
Confidence 00 12799999999999999999999999876 55555444
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=54.30 E-value=51 Score=22.60 Aligned_cols=56 Identities=13% Similarity=0.113 Sum_probs=39.8
Q ss_pred EEEeCCCCCCCHHHHHHHhccC-C-CceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 204 LFIANLGPNCTEDELKQTLSVY-P-GFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~~-G-~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
-|.--++...+..+++..++.. | .|.+|.... ..+.-=|||++..-++|......|
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444588999999999999874 4 456666544 222235999999999988876554
No 241
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=53.79 E-value=48 Score=20.06 Aligned_cols=42 Identities=12% Similarity=0.135 Sum_probs=30.1
Q ss_pred HHHHHHHhccCC-CceEEEEEeeC-CcCeEEEEeCCHHHHHHHH
Q 023320 215 EDELKQTLSVYP-GFNMLKMRARG-GMPVAFADFEEVEQASIAM 256 (284)
Q Consensus 215 ~~~L~~~F~~~G-~v~~v~~~~~~-~~~~afV~f~~~e~A~~A~ 256 (284)
-.++..++...| +|..+...... ......+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356667777776 67777765533 4568888889988888776
No 242
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=52.91 E-value=57 Score=21.60 Aligned_cols=44 Identities=32% Similarity=0.352 Sum_probs=32.1
Q ss_pred HHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 216 DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 216 ~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
.++.+....+| +.-..+....+-++.|+-+.+.+.+.++.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46677778888 555555554334689999999999999888773
No 243
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=49.06 E-value=52 Score=23.12 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=35.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHh-------ccCC-CceEEEEEe---------eCCcC-eEEEEeCCHHHHHHHHHH
Q 023320 202 STLFIANLGPNCTEDELKQTL-------SVYP-GFNMLKMRA---------RGGMP-VAFADFEEVEQASIAMEG 258 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F-------~~~G-~v~~v~~~~---------~~~~~-~afV~f~~~e~A~~A~~~ 258 (284)
.++|| |.++++++++..+. ...| .|.++.... +..+| |.++.|.-..++.+.++.
T Consensus 9 E~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 9 ETMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred eEEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 35666 66777787766654 4444 455554322 34455 899999988888888765
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.64 E-value=9.4 Score=26.42 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=21.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhh
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFR 57 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~ 57 (284)
.-..++|.|.|||...++++|++..+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 44569999999999999999986544
No 245
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.58 E-value=24 Score=30.67 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=30.2
Q ss_pred EEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeecCCCCCcC
Q 023320 78 AFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARSNSRKKRK 122 (284)
Q Consensus 78 aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~~~~ 122 (284)
|||+|.+..+|..|.+.+.... ++.++++.|....|-..+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~-----~~~~~v~~APeP~DI~W~ 40 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR-----PNSWRVSPAPEPDDIIWE 40 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC-----CCCceEeeCCCccccccc
Confidence 7999999999999999665544 345688877776665444
No 246
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=46.26 E-value=95 Score=21.27 Aligned_cols=55 Identities=9% Similarity=0.064 Sum_probs=37.9
Q ss_pred EEcCCCCcccHHHHHHHhhcC-CC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHH
Q 023320 39 FVSGLPDDVRAREIHNLFRRK-PG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHE 94 (284)
Q Consensus 39 fV~nLp~~~te~~L~~~F~~~-G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~ 94 (284)
|+=-.+...+..+|++.++.. |- |..|.......+.+ =|||.+..-+.|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K-KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK-KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE-EEEEEeCCCCcHHHHHHh
Confidence 333356688999999999874 42 55665554334433 799999999998887543
No 247
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.26 E-value=17 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=9.9
Q ss_pred cccHHHHHHHhhcCC
Q 023320 46 DVRAREIHNLFRRKP 60 (284)
Q Consensus 46 ~~te~~L~~~F~~~G 60 (284)
++++++|+++|.+.+
T Consensus 20 Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIK 34 (36)
T ss_dssp ---HHHHHHHHHCS-
T ss_pred cCCHHHHHHHHHHhc
Confidence 689999999998754
No 248
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=44.18 E-value=90 Score=20.59 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh
Q 023320 50 REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (284)
Q Consensus 50 ~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (284)
++|.+.+..+| +....+. +-|.+++.|+-+.+.+.++++.+.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~s--GsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS--GSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE--TTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC--CCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35677788898 4444444 3434558999999999999888766
No 249
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=44.05 E-value=23 Score=28.02 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=50.3
Q ss_pred eEEEcCCCCcccHH-----HHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC-eEEE
Q 023320 37 TLFVSGLPDDVRAR-----EIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS-VLHI 110 (284)
Q Consensus 37 ~lfV~nLp~~~te~-----~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~-~l~v 110 (284)
++.+-+++..+-.+ ...++|..|-+....++. +..+ .--|.|.+.+.|..|...+++..+. |+ .+.+
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l-rsfr---rvRi~f~~p~~a~~a~i~~~~~~f~---~~~~~k~ 84 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL-RSFR---RVRINFSNPEAAADARIKLHSTSFN---GKNELKL 84 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH-Hhhc---eeEEeccChhHHHHHHHHhhhcccC---CCceEEE
Confidence 35566666553222 234677777665544555 2223 6778999999999999999999997 66 7777
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
-+++....
T Consensus 85 yfaQ~~~~ 92 (193)
T KOG4019|consen 85 YFAQPGHP 92 (193)
T ss_pred EEccCCCc
Confidence 76665543
No 250
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=43.65 E-value=30 Score=27.33 Aligned_cols=51 Identities=25% Similarity=0.214 Sum_probs=36.8
Q ss_pred cCeEEEeCCCCCCCHHHHHH---HhccCCCceEEEEEeeCC-----cCeEEEEeCCHHHHHHHHHH
Q 023320 201 CSTLFIANLGPNCTEDELKQ---TLSVYPGFNMLKMRARGG-----MPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~---~F~~~G~v~~v~~~~~~~-----~~~afV~f~~~e~A~~A~~~ 258 (284)
.+++|.+ .|++.|.+ +-+ |.+..|.+.+... +|-.||+|.+.++|...++.
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5677776 45554444 444 7899999887333 45799999999999987754
No 251
>PF14893 PNMA: PNMA
Probab=41.63 E-value=32 Score=30.22 Aligned_cols=51 Identities=24% Similarity=0.509 Sum_probs=34.2
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhc----cCCCceEEE--EEeeCCcCeEEEEeCC
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLS----VYPGFNMLK--MRARGGMPVAFADFEE 248 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~----~~G~v~~v~--~~~~~~~~~afV~f~~ 248 (284)
+.+.+.|.|.+||.++++++|.+... ..|.+.-.. +.+..+..-|+|+|..
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 34577899999999999999988654 455443222 1223334478888864
No 252
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.48 E-value=71 Score=22.00 Aligned_cols=47 Identities=15% Similarity=0.148 Sum_probs=30.4
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEec
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFV 83 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~ 83 (284)
.-|||+|++..+-|.-...+.+..+.= ++.+...+.+.++|+|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEccCCCCCEEEEEeC
Confidence 349999999988776555555543332 34445555666668888773
No 253
>PRK11901 hypothetical protein; Reviewed
Probab=40.57 E-value=2e+02 Score=25.18 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=40.0
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee---EEEEEecCHHHHHHHHHHhCCC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAALHELNGV 98 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~---~aFV~F~~~~~A~~A~~~l~g~ 98 (284)
.-+|=|-.+ -.++.|..+..+++ +..+++....++++. .-+=.|.+.++|+.|+..|-..
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 355555543 46778888888776 345556544455555 3344799999999999987543
No 254
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=39.98 E-value=35 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.0
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 240 PVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 240 ~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.+.+|.|.|..+|.+|-+.|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 46899999999999999999766553
No 255
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=39.66 E-value=1.1e+02 Score=20.35 Aligned_cols=61 Identities=11% Similarity=0.132 Sum_probs=42.5
Q ss_pred EEEeCCCCCCCHHHHHHHhcc-------CCCceEEEEEe--eCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 204 LFIANLGPNCTEDELKQTLSV-------YPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~-------~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
|..+++|..+|.++|..+-.. +.+|+-++-.- +.++-||+.+=.|.|...++-+.- |...+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~d 72 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPAD 72 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCcc
Confidence 557889998999999886544 33455444332 466668888888888877776655 77766
No 256
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=38.60 E-value=96 Score=19.14 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=31.9
Q ss_pred EEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHhC
Q 023320 204 LFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~ln 260 (284)
|+|..-+..-.-.+|.++|+.+| .|..+...... +.....+++.+. .....++.|.
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~-~~~~l~~~l~ 60 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP-VPEEVLEELK 60 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC-CCHHHHHHHH
Confidence 44444444445678889999887 67777765543 333455555554 3334444443
No 257
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=37.95 E-value=17 Score=32.39 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=45.3
Q ss_pred cCeEEEeCCCCCCCHH--------HHHHHhcc--CCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHH
Q 023320 201 CSTLFIANLGPNCTED--------ELKQTLSV--YPGFNMLKMRA----RGGMPVAFADFEEVEQASIAME 257 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~--------~L~~~F~~--~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~ 257 (284)
.+.+|+.+.+...+.+ ++...|.. ++....+++.+ +..+|..|++|...+.|+++..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5778888888755555 99999999 66777777766 4456789999999999999974
No 258
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.77 E-value=46 Score=28.16 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=25.9
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
....|+||||.++..-|.++++..-.+..+.++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 357899999999999999999876555445555
No 259
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.03 E-value=6.2 Score=35.47 Aligned_cols=77 Identities=6% Similarity=-0.123 Sum_probs=56.9
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
-+-|+..||..+++++|.-+|..||.|.-+.+... +.-+...+||+-.. ..|..+|..+..+.++ |..+++..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~---~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTF---ESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhh---hhhhhhhcC
Confidence 34577889999999999999999999977766522 22223388888764 5677888877777777 777777776
Q ss_pred ecC
Q 023320 114 RSN 116 (284)
Q Consensus 114 ~~~ 116 (284)
...
T Consensus 80 ~~s 82 (572)
T KOG4365|consen 80 PSS 82 (572)
T ss_pred chh
Confidence 543
No 260
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=36.78 E-value=6.1 Score=36.58 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=50.7
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee--CCCCeeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT--GRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~--~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
.++||++|++..++-.+|..+++.+..+..+-+.-. -|.-..++.|+|.-.-....|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 367999999999999999999999977765544310 0111118899999888888888888888775
No 261
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=35.80 E-value=1.4e+02 Score=27.99 Aligned_cols=64 Identities=14% Similarity=0.176 Sum_probs=40.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhc----cCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLS----VYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~----~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
+..+-++.-..+.+.-+|..+|. .+|-|.++.+.- .......++.|.+.++|.+|+..+-...+
T Consensus 189 G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~ 259 (499)
T PRK11230 189 GEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIAAGI 259 (499)
T ss_pred CcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHhcCC
Confidence 44444543222333457777775 566677777654 22234678999999999999988754433
No 262
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=35.44 E-value=1.1e+02 Score=26.83 Aligned_cols=49 Identities=16% Similarity=0.195 Sum_probs=32.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHH----------HhhcCCCeeEEEEeeeCCCCee-EEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHN----------LFRRKPGFDFCQLKYTGRGNQV-VAFAT 81 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~----------~F~~~G~v~~v~~~~~~~~~~~-~aFV~ 81 (284)
.+-+-+|.-.|||... |.+|+. +|+.-|.|..|.+.+....-+. ||+.+
T Consensus 34 ~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~~~gcYyCL~q 93 (353)
T PF15053_consen 34 DDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPESRVGCYYCLLQ 93 (353)
T ss_pred CcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCcceeEEEEeee
Confidence 4556899999999874 456663 5666888998888864433332 44444
No 263
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.18 E-value=1.5e+02 Score=20.44 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 215 EDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 215 ~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
.+.++.+++..| .++++....+.---...+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 346777888877 577777776653347899999999998887555
No 264
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=34.66 E-value=1.1e+02 Score=19.99 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHhccCC-CceEEEEEeeCCcC---eEEEEeC-CHHHHHHHHHHhCC
Q 023320 215 EDELKQTLSVYP-GFNMLKMRARGGMP---VAFADFE-EVEQASIAMEGLQD 261 (284)
Q Consensus 215 ~~~L~~~F~~~G-~v~~v~~~~~~~~~---~afV~f~-~~e~A~~A~~~lng 261 (284)
--++.+.|+.+| ++.++.-++...+. +-||+++ ..++..+|++.|+.
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 457778888887 66666655533323 5667777 55556677777754
No 265
>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain. Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.
Probab=33.75 E-value=1.8e+02 Score=20.97 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEcCCCCcccHHHHHHHhhcCCCe--eEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC
Q 023320 38 LFVSGLPDDVRAREIHNLFRRKPGF--DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 38 lfV~nLp~~~te~~L~~~F~~~G~v--~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
.|..++...+.-.+|++++++=-.+ ..+.+.+.++. -.|..|.+.+.+++.+..+-
T Consensus 49 ~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF~~d~~---~~f~~F~~~~~~k~vv~~lp 106 (108)
T cd01201 49 SYCEELHGKWPFSEIRAIFSRRYLLQNTALELFLASRT---SIFFAFPDQNAVKKVVYALP 106 (108)
T ss_pred eccccccceeeHHHHHHHHHHhhhcccceEEEEEeCCc---eEEEEeCcHHHHHHHHhhcC
Confidence 3445666678899999999842222 34456666655 79999999999999887653
No 266
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=33.69 E-value=1.2e+02 Score=19.00 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=27.9
Q ss_pred CHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHH
Q 023320 214 TEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAME 257 (284)
Q Consensus 214 t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~ 257 (284)
.-.++..+|.+.| +|.++.......+++--+.+.+.+.|.++++
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHH
Confidence 3467888888877 6777776554334444455566666666654
No 267
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=6.3 Score=35.40 Aligned_cols=74 Identities=9% Similarity=-0.016 Sum_probs=54.1
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe--eCCc--CeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA--RGGM--PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~--~~~~--~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
...|+..++...+++++.-+|+-||-|..+.+.+ ..+. -.+||.-.+ .+|..+|+.+--..+++. .+++.++
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~---~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES---QDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhh---hhhhhcC
Confidence 3467889999999999999999999999888766 2222 378887654 456677776666666655 6667666
Q ss_pred ec
Q 023320 278 RS 279 (284)
Q Consensus 278 k~ 279 (284)
+.
T Consensus 80 ~~ 81 (572)
T KOG4365|consen 80 PS 81 (572)
T ss_pred ch
Confidence 43
No 268
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=33.39 E-value=2e+02 Score=21.37 Aligned_cols=71 Identities=17% Similarity=0.044 Sum_probs=46.3
Q ss_pred cCeEEEeCCCCC---CCHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPN---CTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~---~t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
...|-|++.... .+-..+.+....-| .++++..-.+ -..|.|.+.|+-.+|.+.|+...=++- .|.+.+
T Consensus 35 dpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~----~~~irf~~~~~Ql~Ak~vL~~~L~~~y---~VAlnl 107 (127)
T PRK10629 35 ESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND----SLLIRFDSPEQSAAAKEVLDRTLPHGY---IIAQQD 107 (127)
T ss_pred CceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHHcCCCC---EEEEec
Confidence 335666655333 45667777777766 4555555444 499999999999999998865543322 555555
Q ss_pred ee
Q 023320 277 AR 278 (284)
Q Consensus 277 ak 278 (284)
+-
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 43
No 269
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=33.33 E-value=19 Score=23.54 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=16.8
Q ss_pred CCCCCeEEEcCCCCcccHHH
Q 023320 32 DNGINTLFVSGLPDDVRARE 51 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~ 51 (284)
..-++++|||++|..+-.+.
T Consensus 24 s~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 24 SLTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HHcCceEEECCCChHHHHcC
Confidence 55689999999999987764
No 270
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.82 E-value=16 Score=31.92 Aligned_cols=50 Identities=16% Similarity=0.028 Sum_probs=42.9
Q ss_pred CCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 213 CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 213 ~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
++...+.++..+.|+|..-.|.+--+.|.+||-.-..+++.++++.|.+.
T Consensus 273 ~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 273 WPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 34578888889999998888888666689999999999999999999875
No 271
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=31.47 E-value=1e+02 Score=21.72 Aligned_cols=48 Identities=10% Similarity=0.170 Sum_probs=29.0
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecC
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN 84 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~ 84 (284)
.-|||++++..+-+.--..+-+.++. -.+.+...+.+.++|+|-++.+
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEEcCCCCCCcEEEecCC
Confidence 34999998887766543444444433 2333444555555688887764
No 272
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=30.73 E-value=33 Score=22.33 Aligned_cols=39 Identities=21% Similarity=0.316 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 216 DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 216 ~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
++|.+.|..+..+..+ +.- .+|..|.|.++|..++.++.
T Consensus 27 ~~v~~~~~~~~~f~k~--vkL----~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKI--VKL----KAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhh--hhh----hhccCCCCHHHHHHHHHHhh
Confidence 5777777665544322 222 39999999999999988764
No 273
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=30.52 E-value=40 Score=27.90 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=29.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM 233 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~ 233 (284)
...+||+-|+|...|++-|..+.++.|.++.+.+
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 3778999999999999999999999997666554
No 274
>PRK11901 hypothetical protein; Reviewed
Probab=28.95 E-value=1.6e+02 Score=25.77 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=31.4
Q ss_pred CCCHHHHHHHhccCCCceEEEEEe--eCCcC-eEEE--EeCCHHHHHHHHHHhC
Q 023320 212 NCTEDELKQTLSVYPGFNMLKMRA--RGGMP-VAFA--DFEEVEQASIAMEGLQ 260 (284)
Q Consensus 212 ~~t~~~L~~~F~~~G~v~~v~~~~--~~~~~-~afV--~f~~~e~A~~A~~~ln 260 (284)
.-.++.|..+-..++ +..+.+.. .+++. |..| .|.+.++|.+|++.|-
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLP 305 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLP 305 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCC
Confidence 355778888877775 34444444 23333 4333 5899999999999873
No 275
>COG3495 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.42 E-value=54 Score=24.77 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCe
Q 023320 7 DPYYLPPIHPPPPPVPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGF 62 (284)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v 62 (284)
-||+++-+|=+|+ ++|..|||+ .+....-++|++-|..-|.+
T Consensus 96 VPy~GACiHvPpP-------------PpNQIV~Vk-~~kg~km~elyqp~wV~Gtl 137 (166)
T COG3495 96 VPYTGACIHVPPP-------------PPNQIVLVK-PAKGYKMSELYQPVWVTGTL 137 (166)
T ss_pred ecccCceeecCCc-------------CCCeEEEEe-cCCCccHhHhhceeEEeeee
Confidence 3788888886542 246778887 57778888888777666654
No 276
>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.
Probab=28.01 E-value=1.8e+02 Score=19.81 Aligned_cols=44 Identities=16% Similarity=0.199 Sum_probs=32.7
Q ss_pred ccHHHHHHHh----h-cCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHH
Q 023320 47 VRAREIHNLF----R-RKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALH 93 (284)
Q Consensus 47 ~te~~L~~~F----~-~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~ 93 (284)
++-.+|.... . +|+....+.|++.+.. =-+|+-.+.++-..|+.
T Consensus 21 ~t~~~L~~~v~~~F~~~~~~~~~flIKYkD~d---GDlVTIts~~dL~~A~~ 69 (81)
T cd06401 21 ITYDELLLMMQRVFRGKLGSSDDVLIKYKDED---GDLITIFDSSDLSFAIQ 69 (81)
T ss_pred ccHHHHHHHHHHHhccccCCcccEEEEEECCC---CCEEEeccHHHHHHHHh
Confidence 6778877655 3 5666678888877665 37899999888888865
No 277
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.72 E-value=84 Score=27.98 Aligned_cols=66 Identities=14% Similarity=0.221 Sum_probs=47.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCce-EEEEEe------eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRA------RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~-~v~~~~------~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
..+.|.+||+..++++|.+-...|-+-. ...+.. ..-.+.|+|.|...++...-...++|..+-+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld~ 80 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLDN 80 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEecC
Confidence 4577899999999999998777765322 222221 11134799999999998888888999887654
No 278
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=25.90 E-value=53 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=22.7
Q ss_pred CCeEEEcCCCCcccHHHHHHHhh--cCCCe
Q 023320 35 INTLFVSGLPDDVRAREIHNLFR--RKPGF 62 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~--~~G~v 62 (284)
...++|+|||+.++..-|.+++. .||.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 46789999999999999998887 45443
No 279
>PF01698 FLO_LFY: Floricaula / Leafy protein; InterPro: IPR002910 This family consists of various plant development proteins which are homologues of Floricaula (FLO) and leafy (LFY) proteins which are floral meristem identity proteins. Mutations in the sequences of these proteins affect flower and leaf development.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2VY1_A 2VY2_A.
Probab=25.69 E-value=23 Score=31.47 Aligned_cols=11 Identities=18% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHhhcCCC
Q 023320 51 EIHNLFRRKPG 61 (284)
Q Consensus 51 ~L~~~F~~~G~ 61 (284)
.|.++|..||.
T Consensus 50 ~LEdLF~~YGV 60 (386)
T PF01698_consen 50 GLEDLFQGYGV 60 (386)
T ss_dssp -----------
T ss_pred hHHHHHhhccc
Confidence 78999999985
No 280
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.27 E-value=2e+02 Score=18.66 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=37.9
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE 248 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~ 248 (284)
..+|.|.++-..--...+....+.-.++..+.+.... +-++|+|++
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~--~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK--GTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc--CeEEEEEcC
Confidence 3578888888888888999999999999988877654 459999988
No 281
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=24.48 E-value=2.3e+02 Score=19.04 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=39.0
Q ss_pred EEEeCCCCCCCHHHHHHHhccCC--CceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 204 LFIANLGPNCTEDELKQTLSVYP--GFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 204 L~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
-|+-.++...|..+++..++..- .|..|.... ..+.-=|||++..-+.|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 44556899999999999998744 455665444 222225999999888887765544
No 282
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.03 E-value=1.3e+02 Score=20.30 Aligned_cols=36 Identities=8% Similarity=0.045 Sum_probs=24.8
Q ss_pred ceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 228 FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 228 v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
|.++-. .+.-+||-||+=.+..+..+|++.+-+...
T Consensus 34 I~Si~~-~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 34 IYSIFA-PDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp --EEEE--TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred eEEEEE-eCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 334333 355689999999999999999988765443
No 283
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=23.51 E-value=1.9e+02 Score=20.17 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=37.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
+.+|| -+-+.++...|..-|-.-| .-+--.+.++.=+++|.|+|.+.+.+..|.+.|-
T Consensus 14 ~QVlY--S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 14 NQVLY--SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred CCEEE--ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 34444 2445556666665555444 2223345556556799999999999999988773
No 284
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=23.34 E-value=66 Score=30.02 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=31.4
Q ss_pred CeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 240 PVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 240 ~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
.|++++|++.+.+.+|+..++|....+. .+++..+++
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~---~~~~~~~~~ 100 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGF---ILRVQLGAT 100 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcc---hhhhhhccc
Confidence 4999999999999999999999998865 766666543
No 285
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=23.02 E-value=2.1e+02 Score=19.79 Aligned_cols=47 Identities=19% Similarity=0.360 Sum_probs=26.6
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeeCCCCeeEEEEEecC
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVN 84 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~~~aFV~F~~ 84 (284)
.-|||++++..+-+. |.+...+. +. -.+.+...+.+.++|.|-++.+
T Consensus 26 ~GVyVg~~s~rVRe~-lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 26 AGVYVGGVSASVRER-IWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCcEEcCCCHHHHHH-HHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 349999998887664 33333332 22 1233344445555588877654
No 286
>PF15471 TMEM171: Transmembrane protein family 171
Probab=22.61 E-value=1.1e+02 Score=25.86 Aligned_cols=10 Identities=40% Similarity=0.932 Sum_probs=5.5
Q ss_pred CCCCCCCCCC
Q 023320 3 HPPYDPYYLP 12 (284)
Q Consensus 3 ~~~~~~~~~~ 12 (284)
||||+||..-
T Consensus 220 PPPPPPYF~e 229 (319)
T PF15471_consen 220 PPPPPPYFPE 229 (319)
T ss_pred CCccCCCCCC
Confidence 4566666543
No 287
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=22.05 E-value=1.2e+02 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.4
Q ss_pred CeEEEcCCCCcccHHHHHHHhhc
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRR 58 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~ 58 (284)
.-+.|+|||+.++..-|..++..
T Consensus 106 ~~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 106 PLKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred cceEEEeCCccchHHHHHHHHhc
Confidence 35789999999999888888764
No 288
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.02 E-value=1.2e+02 Score=29.96 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=30.1
Q ss_pred CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 237 GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 237 ~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
+..+.|||+|.+.-.|+.|.+..++.... ...+++|=+
T Consensus 303 ~~~~~aFVtf~sr~~A~~~aq~~~~~~~~-----~w~~~~APe 340 (728)
T KOG1134|consen 303 KPLPAAFVTFKSRYGAAVAAQTQQSLNPT-----KWLTEFAPE 340 (728)
T ss_pred CCCceEEEEEEeeHHHHHHHHhhhcCCCC-----ceEEEecCC
Confidence 34579999999999999999987666666 667777644
No 289
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.94 E-value=2e+02 Score=17.60 Aligned_cols=45 Identities=7% Similarity=0.205 Sum_probs=25.1
Q ss_pred CHHHHHHHhccCC-CceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHh
Q 023320 214 TEDELKQTLSVYP-GFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 214 t~~~L~~~F~~~G-~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~l 259 (284)
.-.+|..+|+.+| .|..+..... .+.....+...+. +...+++.|
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 4567888888887 5666665442 2223444555543 333444444
No 290
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=21.52 E-value=2.5e+02 Score=19.89 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=32.3
Q ss_pred HHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 216 DELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 216 ~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
+.+...++.-| .++++....+ --.|.|.+.++-.+|.+.|+..
T Consensus 49 ~~v~~~L~~~~I~~k~i~~~~~----~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 49 FQVEQALKAAGIAVKSIEQEGD----SLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred HHHHHHHHHCCCCcceEEeeCC----EEEEEECCHHHHHHHHHHHHHH
Confidence 47888888766 4555554433 4899999999999999888543
No 291
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.87 E-value=2.3e+02 Score=17.73 Aligned_cols=46 Identities=17% Similarity=0.034 Sum_probs=30.1
Q ss_pred CHHHHHHHhccCC-CceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHh
Q 023320 214 TEDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 214 t~~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~l 259 (284)
.-.+|..+|..+| .|..+...... ..+...+.++..++..++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888998888 67677655431 1345567776666666776666
No 292
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=20.29 E-value=1.3e+02 Score=25.10 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCC
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPG 61 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~ 61 (284)
-+.|+|||+.++...|.+++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 4889999999999999999975543
No 293
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.17 E-value=2.2e+02 Score=17.30 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=26.7
Q ss_pred HHHHHHHhccCC-CceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHH
Q 023320 215 EDELKQTLSVYP-GFNMLKMRARG--GMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 215 ~~~L~~~F~~~G-~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~ 258 (284)
-.++.+++..+| +|.++...... +.....++.++.+.+.++++.
T Consensus 13 L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 13 LHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence 356777888777 66666654432 333556666776666666654
Done!