Query 023320
Match_columns 284
No_of_seqs 144 out of 1474
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 04:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.5E-37 1.2E-41 252.6 17.7 166 32-280 12-181 (213)
2 3pgw_A U1-A; protein-RNA compl 100.0 1.3E-35 4.6E-40 253.4 26.1 241 30-279 4-282 (282)
3 2adc_A Polypyrimidine tract-bi 100.0 7.7E-36 2.6E-40 247.3 22.0 198 30-281 29-229 (229)
4 3tyt_A Heterogeneous nuclear r 100.0 1.4E-35 4.9E-40 241.1 18.6 197 33-277 2-204 (205)
5 3md3_A Nuclear and cytoplasmic 100.0 2.8E-35 9.6E-40 231.4 18.8 161 36-279 1-166 (166)
6 1qm9_A Polypyrimidine tract-bi 100.0 9.9E-35 3.4E-39 235.3 20.3 193 35-281 3-198 (198)
7 3nmr_A Cugbp ELAV-like family 100.0 3.5E-34 1.2E-38 227.1 22.1 166 34-277 2-174 (175)
8 1b7f_A Protein (SXL-lethal pro 100.0 3.8E-34 1.3E-38 225.5 21.6 161 34-277 2-168 (168)
9 1fxl_A Paraneoplastic encephal 100.0 8.5E-34 2.9E-38 223.1 21.8 160 35-277 2-167 (167)
10 2qfj_A FBP-interacting repress 100.0 6.9E-34 2.4E-38 233.2 18.0 176 33-282 26-207 (216)
11 1l3k_A Heterogeneous nuclear r 100.0 1.6E-33 5.5E-38 227.6 19.2 170 31-281 9-184 (196)
12 2yh0_A Splicing factor U2AF 65 100.0 2.6E-33 8.8E-38 226.7 19.0 181 33-283 2-197 (198)
13 1fje_B Nucleolin RBD12, protei 100.0 4.5E-34 1.5E-38 226.8 11.6 164 29-280 7-174 (175)
14 2g4b_A Splicing factor U2AF 65 100.0 5.6E-33 1.9E-37 219.8 16.4 154 34-277 3-171 (172)
15 2cjk_A Nuclear polyadenylated 100.0 2.8E-33 9.6E-38 220.4 12.4 159 34-280 2-166 (167)
16 3smz_A Protein raver-1, ribonu 100.0 1.2E-31 4E-36 229.1 20.8 166 34-281 94-265 (284)
17 2ghp_A U4/U6 snRNA-associated 100.0 2.4E-31 8.3E-36 228.0 16.4 168 34-280 116-291 (292)
18 3sde_A Paraspeckle component 1 100.0 7.9E-31 2.7E-35 221.3 18.9 157 32-280 19-179 (261)
19 2ghp_A U4/U6 snRNA-associated 100.0 7.7E-31 2.6E-35 224.9 17.4 158 31-281 37-198 (292)
20 3smz_A Protein raver-1, ribonu 100.0 3.1E-30 1.1E-34 220.3 20.2 152 34-281 21-176 (284)
21 2i2y_A Fusion protein consists 99.9 6.2E-24 2.1E-28 164.2 12.1 137 75-282 13-150 (150)
22 2kn4_A Immunoglobulin G-bindin 99.9 2.6E-23 9E-28 162.0 13.8 79 200-281 69-151 (158)
23 4f25_A Polyadenylate-binding p 99.9 8.7E-24 3E-28 155.8 10.3 79 35-116 5-83 (115)
24 4fxv_A ELAV-like protein 1; RN 99.9 1.1E-21 3.8E-26 140.4 9.3 77 200-279 18-98 (99)
25 3r27_A HnRNP L, heterogeneous 99.9 1.7E-21 6E-26 138.1 9.1 81 196-281 16-98 (100)
26 4fxv_A ELAV-like protein 1; RN 99.8 3.1E-20 1.1E-24 132.8 11.3 79 34-115 18-98 (99)
27 3s8s_A Histone-lysine N-methyl 99.8 1.2E-20 4E-25 137.7 9.2 79 199-280 4-86 (110)
28 3r27_A HnRNP L, heterogeneous 99.8 1.9E-20 6.5E-25 132.8 10.0 80 30-116 16-97 (100)
29 4f25_A Polyadenylate-binding p 99.8 1.2E-20 4E-25 139.0 8.7 78 201-281 5-84 (115)
30 2ad9_A Polypyrimidine tract-bi 99.8 3E-20 1E-24 136.4 10.8 81 197-282 27-109 (119)
31 2cq1_A PTB-like protein L; RRM 99.8 4.2E-20 1.4E-24 132.3 11.3 82 197-283 11-94 (101)
32 1wex_A Hypothetical protein (r 99.8 3.7E-20 1.3E-24 133.4 11.0 80 198-282 12-93 (104)
33 1sjq_A Polypyrimidine tract-bi 99.8 8.2E-21 2.8E-25 136.0 7.2 79 199-282 14-94 (105)
34 2lkz_A RNA-binding protein 5; 99.8 6.3E-21 2.2E-25 135.1 6.6 76 201-279 9-94 (95)
35 2err_A Ataxin-2-binding protei 99.8 2.2E-20 7.5E-25 136.2 9.4 82 32-116 26-107 (109)
36 1x4d_A Matrin 3; structural ge 99.8 1.7E-20 5.8E-25 134.2 7.9 78 199-281 13-93 (102)
37 2wbr_A GW182, gawky, LD47780P; 99.8 2.7E-20 9.1E-25 127.4 8.2 73 201-278 7-79 (89)
38 1x4f_A Matrin 3; structural ge 99.8 5.9E-20 2E-24 133.3 10.5 80 198-282 22-104 (112)
39 2lxi_A RNA-binding protein 10; 99.8 4.9E-21 1.7E-25 134.9 4.7 79 201-282 1-85 (91)
40 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.6E-24 131.1 12.2 85 198-282 12-99 (105)
41 2dnz_A Probable RNA-binding pr 99.8 1.2E-19 4E-24 128.9 11.7 81 199-282 3-87 (95)
42 2e5j_A Methenyltetrahydrofolat 99.8 1E-19 3.6E-24 129.7 11.4 80 199-282 17-96 (97)
43 1why_A Hypothetical protein ri 99.8 1.3E-19 4.6E-24 129.2 11.8 80 198-282 14-95 (97)
44 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.4E-24 129.5 12.1 81 199-282 15-98 (100)
45 2jvo_A Nucleolar protein 3; nu 99.8 5.9E-20 2E-24 133.6 9.8 89 21-118 17-105 (108)
46 2a3j_A U1 small nuclear ribonu 99.8 7E-20 2.4E-24 136.6 10.4 81 198-281 26-111 (127)
47 2d9p_A Polyadenylate-binding p 99.8 1.4E-19 4.6E-24 130.6 11.6 81 199-282 13-95 (103)
48 1x4d_A Matrin 3; structural ge 99.8 6.4E-20 2.2E-24 131.2 9.6 81 32-119 12-95 (102)
49 1sjq_A Polypyrimidine tract-bi 99.8 4.8E-20 1.6E-24 132.0 8.9 82 31-119 12-95 (105)
50 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.7E-20 2E-24 128.3 9.0 78 200-280 5-86 (87)
51 1x4a_A Splicing factor, argini 99.8 1.9E-19 6.5E-24 131.2 12.1 81 199-282 20-101 (109)
52 2cq3_A RNA-binding protein 9; 99.8 2.2E-19 7.4E-24 129.5 12.1 81 199-282 13-95 (103)
53 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.4E-24 128.4 10.6 77 199-278 14-94 (94)
54 2dnq_A RNA-binding protein 4B; 99.8 1.6E-19 5.6E-24 126.9 10.9 77 199-282 6-82 (90)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.3E-20 2.1E-24 127.6 8.6 77 199-278 5-85 (85)
56 2x1f_A MRNA 3'-END-processing 99.8 7.7E-20 2.6E-24 130.2 9.3 80 200-282 1-84 (96)
57 1x5s_A Cold-inducible RNA-bind 99.8 1.8E-19 6.2E-24 129.7 11.4 82 198-282 9-94 (102)
58 2khc_A Testis-specific RNP-typ 99.8 2.1E-19 7.1E-24 132.9 11.9 79 197-278 36-118 (118)
59 2xnq_A Nuclear polyadenylated 99.8 1.4E-19 4.8E-24 129.0 10.4 79 29-116 16-95 (97)
60 1u6f_A Tcubp1, RNA-binding pro 99.8 9.3E-19 3.2E-23 133.2 15.6 90 27-119 34-125 (139)
61 2cq1_A PTB-like protein L; RRM 99.8 3.2E-19 1.1E-23 127.6 12.2 82 31-119 11-94 (101)
62 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.7E-19 5.9E-24 130.1 10.9 81 199-282 13-95 (103)
63 2cpz_A CUG triplet repeat RNA- 99.8 1.7E-19 5.9E-24 132.7 11.1 82 198-282 22-107 (115)
64 2lea_A Serine/arginine-rich sp 99.8 3.8E-20 1.3E-24 140.1 7.7 79 200-281 46-128 (135)
65 1whw_A Hypothetical protein ri 99.8 1.6E-19 5.3E-24 129.3 10.5 81 199-282 6-90 (99)
66 2cq3_A RNA-binding protein 9; 99.8 6.2E-19 2.1E-23 127.1 13.8 88 30-120 10-97 (103)
67 1x5u_A Splicing factor 3B subu 99.8 2E-19 7E-24 130.1 11.3 82 199-283 13-98 (105)
68 3md1_A Nuclear and cytoplasmic 99.8 1.1E-19 3.7E-24 125.8 9.4 77 202-281 2-82 (83)
69 2dgx_A KIAA0430 protein; RRM d 99.8 9.1E-20 3.1E-24 129.8 9.2 80 200-282 8-92 (96)
70 2dgs_A DAZ-associated protein 99.8 3.4E-19 1.2E-23 127.5 12.2 80 199-282 8-91 (99)
71 3s8s_A Histone-lysine N-methyl 99.8 2.6E-19 8.8E-24 130.5 11.6 81 33-116 4-86 (110)
72 2dnm_A SRP46 splicing factor; 99.8 1.3E-19 4.3E-24 130.8 9.9 81 199-282 11-95 (103)
73 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.8E-19 1.6E-23 127.7 12.7 86 31-119 11-96 (103)
74 4a8x_A RNA-binding protein wit 99.8 1.5E-19 5E-24 126.5 9.7 79 200-281 3-86 (88)
75 1wex_A Hypothetical protein (r 99.8 2.5E-19 8.4E-24 129.0 10.9 81 31-118 11-93 (104)
76 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-19 3.9E-24 130.8 9.0 82 198-282 9-94 (102)
77 2cq0_A Eukaryotic translation 99.8 1.6E-19 5.6E-24 130.2 9.9 82 198-282 12-97 (103)
78 2xnq_A Nuclear polyadenylated 99.8 2.2E-19 7.4E-24 128.0 10.1 78 198-282 19-97 (97)
79 2cqc_A Arginine/serine-rich sp 99.8 1.6E-19 5.4E-24 128.2 9.4 79 198-279 12-94 (95)
80 2cpf_A RNA binding motif prote 99.8 1.5E-19 5.3E-24 129.1 9.3 81 199-282 3-90 (98)
81 2kvi_A Nuclear polyadenylated 99.8 2.9E-19 9.9E-24 127.2 10.5 78 198-282 7-85 (96)
82 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-19 5.1E-24 131.4 9.2 80 197-283 27-106 (108)
83 2jrs_A RNA-binding protein 39; 99.8 1.1E-18 3.9E-23 126.8 13.9 84 31-117 22-107 (108)
84 2jrs_A RNA-binding protein 39; 99.8 2.5E-19 8.6E-24 130.3 10.4 80 199-281 24-107 (108)
85 2la6_A RNA-binding protein FUS 99.8 4.1E-19 1.4E-23 127.1 11.4 77 199-278 11-99 (99)
86 2dgt_A RNA-binding protein 30; 99.8 6.2E-19 2.1E-23 124.4 12.1 81 30-119 5-85 (92)
87 2cpj_A Non-POU domain-containi 99.8 3.3E-19 1.1E-23 127.6 10.8 80 198-282 12-91 (99)
88 1x5t_A Splicing factor 3B subu 99.8 1.1E-19 3.9E-24 129.3 8.3 80 200-282 4-88 (96)
89 2diu_A KIAA0430 protein; struc 99.8 2.6E-19 8.8E-24 123.6 9.6 75 199-282 6-86 (96)
90 2hvz_A Splicing factor, argini 99.8 1.4E-19 4.7E-24 130.1 8.7 77 36-118 1-77 (101)
91 2ad9_A Polypyrimidine tract-bi 99.8 2.9E-19 9.9E-24 131.1 10.5 84 29-119 25-110 (119)
92 2cph_A RNA binding motif prote 99.8 5.4E-19 1.9E-23 128.3 11.8 80 199-281 13-98 (107)
93 1p27_B RNA-binding protein 8A; 99.8 4.5E-19 1.5E-23 128.5 11.3 81 199-282 21-105 (106)
94 2jvr_A Nucleolar protein 3; RN 99.8 7.7E-20 2.6E-24 133.1 7.2 79 200-281 27-106 (111)
95 2fy1_A RNA-binding motif prote 99.8 3.9E-19 1.3E-23 131.0 11.0 80 200-282 6-88 (116)
96 2err_A Ataxin-2-binding protei 99.8 1.7E-19 5.7E-24 131.5 8.9 81 198-281 26-108 (109)
97 2dgo_A Cytotoxic granule-assoc 99.8 3.3E-19 1.1E-23 131.2 10.6 81 199-282 13-97 (115)
98 2dgv_A HnRNP M, heterogeneous 99.8 2.6E-19 9.1E-24 126.3 9.7 81 199-282 6-88 (92)
99 2cpz_A CUG triplet repeat RNA- 99.8 1.4E-18 4.7E-23 127.9 13.9 87 31-120 21-109 (115)
100 2dnq_A RNA-binding protein 4B; 99.8 6.7E-19 2.3E-23 123.7 11.6 79 32-119 5-83 (90)
101 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-19 1.2E-23 129.1 10.5 81 199-282 11-98 (106)
102 2ytc_A PRE-mRNA-splicing facto 99.8 3.3E-19 1.1E-23 123.9 9.5 75 199-278 10-85 (85)
103 2d9p_A Polyadenylate-binding p 99.8 1.3E-18 4.4E-23 125.4 13.0 87 31-120 11-97 (103)
104 2la4_A Nuclear and cytoplasmic 99.8 1.6E-19 5.5E-24 129.7 8.2 76 200-280 26-101 (101)
105 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.5E-19 2.2E-23 122.4 10.9 80 32-114 4-85 (85)
106 2kxn_B Transformer-2 protein h 99.8 3.6E-19 1.2E-23 133.5 10.2 81 198-281 43-127 (129)
107 2dnm_A SRP46 splicing factor; 99.8 4.8E-19 1.6E-23 127.7 10.5 87 30-119 8-96 (103)
108 2cpx_A Hypothetical protein FL 99.8 3.8E-19 1.3E-23 130.9 10.1 82 198-282 22-107 (115)
109 2dnz_A Probable RNA-binding pr 99.8 1.2E-18 4E-23 123.7 12.3 85 33-120 3-89 (95)
110 2div_A TRNA selenocysteine ass 99.8 3.1E-19 1.1E-23 127.7 9.3 80 199-281 7-95 (99)
111 1oo0_B CG8781-PA, drosophila Y 99.8 3.3E-19 1.1E-23 130.2 9.5 82 199-283 24-109 (110)
112 2khc_A Testis-specific RNP-typ 99.8 1.2E-18 4.1E-23 128.8 12.6 82 30-114 35-118 (118)
113 2dgs_A DAZ-associated protein 99.8 1.3E-18 4.4E-23 124.5 12.3 86 30-119 5-92 (99)
114 2hvz_A Splicing factor, argini 99.8 1.9E-19 6.4E-24 129.4 7.9 77 202-282 1-77 (101)
115 2dgt_A RNA-binding protein 30; 99.8 5.1E-19 1.8E-23 124.8 10.0 77 199-282 8-84 (92)
116 2la6_A RNA-binding protein FUS 99.8 1.3E-18 4.5E-23 124.5 12.3 80 32-114 10-99 (99)
117 1sjr_A Polypyrimidine tract-bi 99.8 3.7E-19 1.3E-23 137.0 10.0 80 201-281 46-125 (164)
118 3ns6_A Eukaryotic translation 99.8 8.7E-20 3E-24 130.9 6.1 79 200-281 5-94 (100)
119 2ywk_A Putative RNA-binding pr 99.8 2.4E-19 8.1E-24 127.3 8.2 78 199-279 14-94 (95)
120 2cpf_A RNA binding motif prote 99.8 7.2E-19 2.5E-23 125.6 10.7 85 33-120 3-92 (98)
121 1x4f_A Matrin 3; structural ge 99.8 3.6E-19 1.2E-23 129.2 9.1 82 32-120 22-106 (112)
122 1whx_A Hypothetical protein ri 99.8 3.8E-19 1.3E-23 130.0 9.4 76 201-281 10-85 (111)
123 2a3j_A U1 small nuclear ribonu 99.8 4.2E-19 1.4E-23 132.4 9.8 87 29-119 23-113 (127)
124 3bs9_A Nucleolysin TIA-1 isofo 99.8 8.2E-19 2.8E-23 122.4 10.6 81 33-116 4-86 (87)
125 3lqv_A PRE-mRNA branch site pr 99.8 5.5E-19 1.9E-23 130.0 10.1 78 200-280 7-85 (115)
126 2cph_A RNA binding motif prote 99.8 1.7E-18 5.7E-23 125.7 12.5 88 30-120 10-101 (107)
127 2dnp_A RNA-binding protein 14; 99.8 4.7E-19 1.6E-23 124.5 9.2 77 199-282 7-83 (90)
128 1x4a_A Splicing factor, argini 99.8 1.7E-18 5.7E-23 126.2 12.4 86 30-119 17-102 (109)
129 1x4h_A RNA-binding protein 28; 99.8 8.7E-19 3E-23 128.1 10.9 81 199-282 13-103 (111)
130 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4.1E-23 125.3 11.4 86 32-120 9-96 (102)
131 2do4_A Squamous cell carcinoma 99.8 3.1E-18 1E-22 122.8 13.4 85 31-118 13-98 (100)
132 2dgu_A Heterogeneous nuclear r 99.8 6E-19 2.1E-23 127.2 9.7 77 199-282 9-85 (103)
133 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.6E-23 125.3 12.0 87 30-119 10-98 (105)
134 2dgv_A HnRNP M, heterogeneous 99.8 1.2E-18 3.9E-23 123.0 10.9 84 32-118 5-88 (92)
135 1u6f_A Tcubp1, RNA-binding pro 99.8 9.4E-19 3.2E-23 133.2 11.2 82 198-282 39-124 (139)
136 3p5t_L Cleavage and polyadenyl 99.8 1.4E-19 4.6E-24 127.3 6.0 77 202-281 2-84 (90)
137 2cqc_A Arginine/serine-rich sp 99.8 1.5E-18 5E-23 123.2 11.4 82 31-115 11-94 (95)
138 1nu4_A U1A RNA binding domain; 99.8 2.3E-19 7.9E-24 127.9 7.2 81 199-282 6-91 (97)
139 2do0_A HnRNP M, heterogeneous 99.8 1.1E-18 3.7E-23 128.2 11.0 80 199-281 13-95 (114)
140 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-18 4.6E-23 123.2 11.1 80 32-114 13-94 (94)
141 1x4g_A Nucleolysin TIAR; struc 99.8 4.6E-19 1.6E-23 129.2 8.8 79 199-282 23-101 (109)
142 1whw_A Hypothetical protein ri 99.8 1.6E-18 5.3E-23 124.1 11.4 86 31-119 4-91 (99)
143 1s79_A Lupus LA protein; RRM, 99.8 5.8E-19 2E-23 127.0 9.2 77 199-279 9-88 (103)
144 2dnh_A Bruno-like 5, RNA bindi 99.8 3.7E-18 1.3E-22 123.5 13.5 85 32-119 12-100 (105)
145 1x4c_A Splicing factor, argini 99.8 5.4E-19 1.8E-23 128.6 9.0 77 200-282 14-95 (108)
146 3ulh_A THO complex subunit 4; 99.8 7.8E-19 2.7E-23 127.5 9.9 78 199-279 27-107 (107)
147 2la4_A Nuclear and cytoplasmic 99.8 4.5E-19 1.5E-23 127.4 8.5 77 32-115 24-100 (101)
148 2cpi_A CCR4-NOT transcription 99.8 3.8E-19 1.3E-23 130.0 8.2 80 199-281 13-102 (111)
149 2cpd_A Apobec-1 stimulating pr 99.8 1.3E-18 4.5E-23 124.5 10.8 78 198-282 12-91 (99)
150 2cpd_A Apobec-1 stimulating pr 99.8 3E-18 1E-22 122.6 12.7 79 32-119 12-92 (99)
151 2dhg_A TRNA selenocysteine ass 99.8 6.1E-19 2.1E-23 127.4 9.1 81 199-282 7-92 (104)
152 2lxi_A RNA-binding protein 10; 99.8 1.4E-19 4.9E-24 127.4 5.6 80 35-117 1-84 (91)
153 1x5t_A Splicing factor 3B subu 99.8 8.8E-19 3E-23 124.6 9.7 84 33-119 3-89 (96)
154 2m2b_A RNA-binding protein 10; 99.8 4.6E-19 1.6E-23 133.5 8.6 81 199-283 21-111 (131)
155 2wbr_A GW182, gawky, LD47780P; 99.8 7.4E-19 2.5E-23 120.3 8.7 74 34-114 6-79 (89)
156 2cpj_A Non-POU domain-containi 99.8 2.1E-18 7E-23 123.4 11.6 81 32-119 12-92 (99)
157 1x4h_A RNA-binding protein 28; 99.8 2.3E-18 8E-23 125.8 12.0 87 31-120 11-105 (111)
158 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.8E-23 130.5 10.5 80 199-281 20-103 (126)
159 2x1f_A MRNA 3'-END-processing 99.8 1.3E-18 4.4E-23 123.8 10.3 82 34-118 1-84 (96)
160 3ucg_A Polyadenylate-binding p 99.8 6.8E-19 2.3E-23 123.4 8.7 79 201-283 6-88 (89)
161 3zzy_A Polypyrimidine tract-bi 99.8 9.7E-19 3.3E-23 129.9 9.9 78 202-281 29-107 (130)
162 1rk8_A CG8781-PA, CG8781-PA pr 99.8 5.3E-19 1.8E-23 138.5 9.0 79 200-281 71-153 (165)
163 2cq0_A Eukaryotic translation 99.8 2E-18 6.8E-23 124.4 11.3 86 31-119 11-98 (103)
164 2e5i_A Heterogeneous nuclear r 99.8 3.5E-18 1.2E-22 126.4 12.7 80 199-281 21-103 (124)
165 2cqp_A RNA-binding protein 12; 99.8 5.5E-19 1.9E-23 126.2 8.1 80 199-281 13-96 (98)
166 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4E-23 124.0 9.8 81 33-117 7-91 (96)
167 2lkz_A RNA-binding protein 5; 99.8 5.9E-19 2E-23 124.9 8.1 81 32-115 6-94 (95)
168 1x4c_A Splicing factor, argini 99.8 2.4E-18 8.2E-23 125.1 11.6 80 32-119 12-96 (108)
169 2rs2_A Musashi-1, RNA-binding 99.8 8.7E-19 3E-23 127.6 9.2 89 26-118 16-106 (109)
170 3md1_A Nuclear and cytoplasmic 99.8 2.4E-18 8.3E-23 118.9 11.1 79 35-116 1-81 (83)
171 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-18 4.3E-23 120.9 9.6 76 32-114 9-85 (85)
172 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.7E-18 5.7E-23 124.6 10.5 86 32-120 9-96 (102)
173 2kvi_A Nuclear polyadenylated 99.8 1.4E-18 4.7E-23 123.7 9.8 80 31-119 6-86 (96)
174 3zzy_A Polypyrimidine tract-bi 99.8 2.6E-18 8.8E-23 127.6 11.6 85 32-122 25-112 (130)
175 2dgo_A Cytotoxic granule-assoc 99.8 4.4E-18 1.5E-22 125.2 12.8 87 30-119 10-98 (115)
176 2dnp_A RNA-binding protein 14; 99.8 1.7E-18 5.9E-23 121.6 10.1 78 32-118 6-83 (90)
177 2dgp_A Bruno-like 4, RNA bindi 99.8 2E-18 6.9E-23 125.1 10.7 89 32-120 10-100 (106)
178 2cpe_A RNA-binding protein EWS 99.8 1.1E-18 3.6E-23 128.1 9.3 81 199-282 13-105 (113)
179 2kxn_B Transformer-2 protein h 99.8 1.2E-18 4.2E-23 130.6 9.8 87 28-117 39-127 (129)
180 1p1t_A Cleavage stimulation fa 99.8 6E-19 2.1E-23 127.4 7.8 79 200-281 7-89 (104)
181 2fc9_A NCL protein; structure 99.8 5.4E-19 1.8E-23 127.0 7.4 81 199-282 13-93 (101)
182 1p27_B RNA-binding protein 8A; 99.8 3.6E-18 1.2E-22 123.7 11.8 83 32-117 20-104 (106)
183 2dgu_A Heterogeneous nuclear r 99.8 2.1E-18 7.1E-23 124.4 10.3 79 32-119 8-86 (103)
184 2cqd_A RNA-binding region cont 99.8 1.9E-18 6.6E-23 127.3 10.1 79 198-280 14-96 (116)
185 3n9u_C Cleavage and polyadenyl 99.8 1.9E-18 6.6E-23 133.7 10.6 82 33-117 53-138 (156)
186 2ywk_A Putative RNA-binding pr 99.8 2.3E-18 7.9E-23 122.2 10.1 81 32-115 13-94 (95)
187 2dng_A Eukaryotic translation 99.8 2.4E-18 8.1E-23 124.1 10.3 79 199-282 13-95 (103)
188 1x4g_A Nucleolysin TIAR; struc 99.8 2.8E-18 9.7E-23 124.9 10.8 83 31-120 21-103 (109)
189 2j76_E EIF-4B, EIF4B, eukaryot 99.8 4E-19 1.4E-23 127.4 6.1 81 32-117 16-99 (100)
190 1wf1_A RNA-binding protein RAL 99.8 2.6E-18 9E-23 125.3 10.6 76 199-281 25-101 (110)
191 2kt5_A RNA and export factor-b 99.8 1.3E-17 4.5E-22 124.3 14.4 80 199-281 33-115 (124)
192 1x5o_A RNA binding motif, sing 99.8 7.8E-18 2.7E-22 123.6 13.0 82 199-280 23-112 (114)
193 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-18 7.7E-23 124.4 9.7 79 199-282 13-96 (104)
194 1x4e_A RNA binding motif, sing 99.8 2.9E-19 9.7E-24 124.2 4.6 78 199-279 3-84 (85)
195 1why_A Hypothetical protein ri 99.8 7.1E-18 2.4E-22 120.2 12.0 82 31-117 13-94 (97)
196 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.5E-18 8.7E-23 133.4 10.4 81 198-281 36-120 (156)
197 1whx_A Hypothetical protein ri 99.8 1.5E-18 5.1E-23 126.8 8.5 79 33-118 8-86 (111)
198 4a8x_A RNA-binding protein wit 99.8 4.5E-18 1.5E-22 118.8 10.6 80 34-116 3-85 (88)
199 2cq2_A Hypothetical protein LO 99.8 7.2E-19 2.5E-23 127.7 6.7 80 199-281 23-107 (114)
200 2div_A TRNA selenocysteine ass 99.8 4.2E-18 1.4E-22 121.8 10.6 83 32-117 6-95 (99)
201 3ns6_A Eukaryotic translation 99.8 2.3E-18 8E-23 123.4 9.3 81 33-116 4-93 (100)
202 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.5E-19 2.6E-23 126.0 6.6 78 199-281 17-99 (100)
203 2cqh_A IGF-II mRNA-binding pro 99.8 1.3E-18 4.6E-23 122.9 7.8 77 200-282 7-85 (93)
204 1oo0_B CG8781-PA, drosophila Y 99.8 3.9E-18 1.3E-22 124.4 10.5 85 31-118 22-108 (110)
205 2cpe_A RNA-binding protein EWS 99.8 4.1E-18 1.4E-22 124.9 10.6 86 31-119 11-106 (113)
206 1fjc_A Nucleolin RBD2, protein 99.8 7E-19 2.4E-23 125.1 6.2 80 199-282 14-93 (96)
207 2nlw_A Eukaryotic translation 99.8 1.6E-18 5.4E-23 125.4 8.1 80 200-281 14-101 (105)
208 2dng_A Eukaryotic translation 99.8 9.3E-18 3.2E-22 120.9 12.1 83 32-119 12-96 (103)
209 2cq4_A RNA binding motif prote 99.8 1.8E-18 6.1E-23 127.1 8.4 82 32-117 22-105 (114)
210 3ulh_A THO complex subunit 4; 99.8 7.9E-18 2.7E-22 122.1 11.7 82 30-114 24-106 (107)
211 1x5p_A Negative elongation fac 99.8 6.1E-18 2.1E-22 120.5 10.9 77 199-282 13-89 (97)
212 2e44_A Insulin-like growth fac 99.8 4.1E-18 1.4E-22 121.1 9.9 79 200-281 14-93 (96)
213 2diu_A KIAA0430 protein; struc 99.8 3.8E-18 1.3E-22 117.8 9.3 80 31-121 4-89 (96)
214 2fy1_A RNA-binding motif prote 99.8 6.5E-18 2.2E-22 124.4 11.1 85 32-119 4-89 (116)
215 2ek1_A RNA-binding protein 12; 99.8 7.3E-19 2.5E-23 124.8 5.8 77 200-279 14-94 (95)
216 2cq4_A RNA binding motif prote 99.8 1.5E-18 5E-23 127.5 7.5 78 200-281 24-105 (114)
217 1p1t_A Cleavage stimulation fa 99.8 2.1E-18 7.1E-23 124.5 8.2 84 32-118 5-90 (104)
218 2dhg_A TRNA selenocysteine ass 99.8 6.8E-18 2.3E-22 121.8 10.9 86 31-119 5-93 (104)
219 3n9u_C Cleavage and polyadenyl 99.8 2E-18 6.9E-23 133.6 8.5 78 200-280 54-137 (156)
220 2do0_A HnRNP M, heterogeneous 99.8 1.3E-17 4.3E-22 122.5 12.3 84 31-117 11-95 (114)
221 2cqp_A RNA-binding protein 12; 99.8 4.6E-18 1.6E-22 121.3 9.6 82 32-116 12-95 (98)
222 2dgw_A Probable RNA-binding pr 99.8 6.1E-18 2.1E-22 119.0 10.0 77 200-281 9-88 (91)
223 2cqh_A IGF-II mRNA-binding pro 99.7 5.8E-18 2E-22 119.6 9.8 80 32-119 5-86 (93)
224 1wf1_A RNA-binding protein RAL 99.7 1.2E-17 4.2E-22 121.7 11.9 78 32-118 24-102 (110)
225 2rs2_A Musashi-1, RNA-binding 99.7 3.6E-18 1.2E-22 124.4 8.9 80 199-282 23-106 (109)
226 2mss_A Protein (musashi1); RNA 99.7 2.4E-18 8.1E-23 116.6 7.0 71 203-277 1-75 (75)
227 2jvr_A Nucleolar protein 3; RN 99.7 2.8E-18 9.5E-23 124.8 7.8 78 33-116 26-105 (111)
228 2fc8_A NCL protein; structure 99.7 3.7E-18 1.3E-22 122.8 8.4 79 198-282 12-94 (102)
229 1wg1_A KIAA1579 protein, homol 99.7 2.9E-18 1E-22 119.9 7.6 76 200-281 4-79 (88)
230 3d2w_A TAR DNA-binding protein 99.7 3.8E-18 1.3E-22 119.5 8.2 80 199-284 9-88 (89)
231 3ex7_B RNA-binding protein 8A; 99.7 8.9E-18 3E-22 125.5 10.7 86 31-119 18-105 (126)
232 3lqv_A PRE-mRNA branch site pr 99.7 7.6E-18 2.6E-22 123.9 10.1 80 33-116 6-85 (115)
233 2jwn_A Embryonic polyadenylate 99.7 4.1E-18 1.4E-22 127.0 8.7 78 201-282 36-117 (124)
234 3pgw_S U1-70K; protein-RNA com 99.7 7.6E-19 2.6E-23 157.6 5.6 79 200-281 101-183 (437)
235 3p5t_L Cleavage and polyadenyl 99.7 2.1E-18 7.2E-23 121.1 6.7 80 36-118 2-85 (90)
236 2cqd_A RNA-binding region cont 99.7 1.3E-17 4.5E-22 122.8 11.2 84 30-117 12-97 (116)
237 1nu4_A U1A RNA binding domain; 99.7 4.1E-18 1.4E-22 121.4 8.2 83 30-118 3-91 (97)
238 3egn_A RNA-binding protein 40; 99.7 3.8E-18 1.3E-22 130.4 8.6 81 198-281 42-131 (143)
239 3s7r_A Heterogeneous nuclear r 99.7 1.5E-17 5E-22 116.0 10.9 79 31-113 7-87 (87)
240 2dis_A Unnamed protein product 99.7 3.4E-18 1.2E-22 124.5 7.9 79 200-281 7-93 (109)
241 1wi8_A EIF-4B, eukaryotic tran 99.7 1.1E-17 3.9E-22 120.7 10.6 83 33-120 13-98 (104)
242 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-17 1.3E-21 117.7 13.2 86 30-120 10-97 (103)
243 2ki2_A SS-DNA binding protein 99.7 9.2E-19 3.2E-23 123.0 4.5 77 202-282 2-82 (90)
244 2dh8_A DAZ-associated protein 99.7 2.3E-18 7.8E-23 124.6 6.7 80 199-282 14-97 (105)
245 2e5i_A Heterogeneous nuclear r 99.7 6.9E-17 2.4E-21 119.4 14.7 79 35-120 25-106 (124)
246 2cpi_A CCR4-NOT transcription 99.7 6.4E-18 2.2E-22 123.5 9.0 84 32-118 12-103 (111)
247 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.4E-18 3.2E-22 127.7 10.3 76 199-277 61-140 (140)
248 1uaw_A Mouse-musashi-1; RNP-ty 99.7 3.8E-18 1.3E-22 116.1 7.2 72 202-277 1-76 (77)
249 3s7r_A Heterogeneous nuclear r 99.7 8.4E-18 2.9E-22 117.2 9.2 75 199-277 9-87 (87)
250 2dh8_A DAZ-associated protein 99.7 9.5E-18 3.3E-22 121.3 9.6 85 31-119 12-98 (105)
251 2ek1_A RNA-binding protein 12; 99.7 4.1E-18 1.4E-22 120.8 7.5 81 32-115 12-94 (95)
252 3tyt_A Heterogeneous nuclear r 99.7 5.9E-18 2E-22 137.1 9.3 78 199-280 2-80 (205)
253 1sjr_A Polypyrimidine tract-bi 99.7 1.5E-17 5.2E-22 128.0 11.1 85 32-119 43-127 (164)
254 3ucg_A Polyadenylate-binding p 99.7 1.1E-17 3.8E-22 117.1 9.4 79 35-117 6-86 (89)
255 2cq2_A Hypothetical protein LO 99.7 6.4E-18 2.2E-22 122.7 8.3 81 32-116 22-106 (114)
256 2dgw_A Probable RNA-binding pr 99.7 3.6E-17 1.2E-21 115.0 11.9 82 31-117 6-88 (91)
257 1x4b_A Heterogeneous nuclear r 99.7 6.5E-18 2.2E-22 124.4 8.4 79 200-282 26-108 (116)
258 2m2b_A RNA-binding protein 10; 99.7 6.2E-18 2.1E-22 127.3 8.4 86 29-118 17-110 (131)
259 2i2y_A Fusion protein consists 99.7 1.2E-17 4.2E-22 128.6 10.3 80 31-116 69-148 (150)
260 2e5j_A Methenyltetrahydrofolat 99.7 2.7E-17 9.1E-22 117.1 11.2 79 32-117 16-95 (97)
261 2krb_A Eukaryotic translation 99.7 3.2E-18 1.1E-22 117.7 6.2 72 201-274 1-80 (81)
262 1fj7_A Nucleolin RBD1, protein 99.7 2.2E-18 7.4E-23 123.8 5.5 79 200-282 16-97 (101)
263 1x5p_A Negative elongation fac 99.7 5.4E-17 1.9E-21 115.5 12.6 79 32-119 12-90 (97)
264 2kt5_A RNA and export factor-b 99.7 1.5E-16 5.2E-21 118.5 15.3 85 31-118 31-116 (124)
265 2e44_A Insulin-like growth fac 99.7 2.9E-17 9.8E-22 116.7 10.8 81 31-116 11-92 (96)
266 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.1E-22 120.1 8.9 81 32-116 8-89 (103)
267 2jwn_A Embryonic polyadenylate 99.7 1.1E-17 3.7E-22 124.7 8.6 84 32-119 33-118 (124)
268 2bz2_A Negative elongation fac 99.7 2.5E-17 8.6E-22 122.0 10.5 76 199-281 37-112 (121)
269 2cqg_A TDP-43, TAR DNA-binding 99.7 2.3E-17 7.7E-22 118.9 10.0 78 199-281 13-94 (103)
270 1x4e_A RNA binding motif, sing 99.7 2.2E-18 7.4E-23 119.7 4.4 79 33-114 3-83 (85)
271 2e5g_A U6 snRNA-specific termi 99.7 1.1E-17 3.7E-22 118.5 8.1 78 200-282 7-84 (94)
272 3beg_B Splicing factor, argini 99.7 1.2E-17 4E-22 122.8 8.3 74 201-280 16-94 (115)
273 1wel_A RNA-binding protein 12; 99.7 9.7E-18 3.3E-22 125.0 8.0 77 200-280 24-104 (124)
274 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.1E-17 1.7E-21 126.0 12.3 84 32-118 36-121 (156)
275 2cpy_A RNA-binding protein 12; 99.7 1E-17 3.4E-22 123.0 7.8 79 199-281 13-95 (114)
276 2cpx_A Hypothetical protein FL 99.7 4.2E-17 1.4E-21 119.8 11.1 84 32-120 22-109 (115)
277 2nlw_A Eukaryotic translation 99.7 2.2E-17 7.7E-22 119.3 9.3 82 32-116 12-100 (105)
278 2e5g_A U6 snRNA-specific termi 99.7 3.4E-17 1.2E-21 115.9 10.0 80 32-118 5-84 (94)
279 2db1_A Heterogeneous nuclear r 99.7 1.3E-17 4.5E-22 123.1 7.9 77 200-280 16-98 (118)
280 1wg5_A Heterogeneous nuclear r 99.7 6.7E-17 2.3E-21 116.6 11.5 84 30-117 10-95 (104)
281 1wg5_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 117.6 10.4 77 200-280 14-94 (104)
282 1wg1_A KIAA1579 protein, homol 99.7 3.7E-17 1.3E-21 114.3 9.6 77 33-117 3-79 (88)
283 2fc9_A NCL protein; structure 99.7 4.5E-17 1.5E-21 116.8 10.4 81 32-118 12-93 (101)
284 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-17 1.1E-21 117.7 9.6 77 200-281 14-93 (102)
285 2lea_A Serine/arginine-rich sp 99.7 1E-17 3.4E-22 126.7 7.2 85 31-118 43-129 (135)
286 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 9.7E-17 3.3E-21 122.0 12.6 81 30-113 58-140 (140)
287 1x5o_A RNA binding motif, sing 99.7 2.6E-16 9E-21 115.4 14.5 87 30-116 20-112 (114)
288 2db1_A Heterogeneous nuclear r 99.7 4.3E-17 1.5E-21 120.3 10.2 82 31-116 13-98 (118)
289 2f3j_A RNA and export factor b 99.7 4.5E-17 1.5E-21 128.7 10.9 80 199-281 86-168 (177)
290 2hgl_A HNRPF protein, heteroge 99.7 1.4E-17 4.7E-22 125.6 7.3 77 200-280 43-125 (136)
291 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.3E-17 2.1E-21 126.7 11.4 85 32-119 69-155 (165)
292 1x4b_A Heterogeneous nuclear r 99.7 2.7E-17 9.2E-22 121.1 8.7 85 32-120 24-110 (116)
293 2krb_A Eukaryotic translation 99.7 1.4E-17 4.9E-22 114.5 6.7 73 35-110 1-80 (81)
294 1wel_A RNA-binding protein 12; 99.7 4.1E-17 1.4E-21 121.6 9.7 81 32-116 22-104 (124)
295 2lmi_A GRSF-1, G-rich sequence 99.7 1.5E-17 5.1E-22 120.7 6.9 78 199-280 9-92 (107)
296 2mss_A Protein (musashi1); RNA 99.7 1.4E-17 4.8E-22 112.7 6.3 73 37-113 1-75 (75)
297 2dis_A Unnamed protein product 99.7 3.7E-17 1.3E-21 118.9 8.9 84 32-118 5-94 (109)
298 2fc8_A NCL protein; structure 99.7 1.9E-16 6.4E-21 113.7 12.5 84 31-120 11-96 (102)
299 2lcw_A RNA-binding protein FUS 99.5 8.5E-19 2.9E-23 129.2 0.0 80 199-281 5-96 (116)
300 3beg_B Splicing factor, argini 99.7 2.3E-17 7.8E-22 121.3 7.6 76 32-115 13-93 (115)
301 3q2s_C Cleavage and polyadenyl 99.7 1.7E-17 5.9E-22 136.5 7.7 78 200-280 67-150 (229)
302 2kn4_A Immunoglobulin G-bindin 99.7 8.9E-17 3E-21 124.9 11.3 84 32-118 67-152 (158)
303 2hgl_A HNRPF protein, heteroge 99.7 4.7E-17 1.6E-21 122.7 9.2 84 29-116 38-125 (136)
304 1fjc_A Nucleolin RBD2, protein 99.7 2.4E-17 8.1E-22 117.1 6.4 82 31-118 12-93 (96)
305 2dnn_A RNA-binding protein 12; 99.7 4.6E-17 1.6E-21 118.1 7.9 74 201-279 16-92 (109)
306 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-16 6.1E-21 113.8 10.9 81 32-117 12-93 (102)
307 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.5E-17 8.6E-22 112.0 6.1 74 36-113 1-76 (77)
308 2ki2_A SS-DNA binding protein 99.7 1E-17 3.4E-22 117.6 4.2 79 36-118 2-82 (90)
309 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-17 4.9E-22 112.7 4.6 71 203-277 1-75 (75)
310 4f02_A Polyadenylate-binding p 99.7 7.4E-17 2.5E-21 131.6 9.3 79 199-280 13-95 (213)
311 2cpy_A RNA-binding protein 12; 99.7 5.3E-17 1.8E-21 119.1 7.7 82 32-117 12-95 (114)
312 1wf0_A TDP-43, TAR DNA-binding 99.7 3.8E-17 1.3E-21 114.2 6.4 79 33-119 3-81 (88)
313 3d2w_A TAR DNA-binding protein 99.7 9.7E-17 3.3E-21 112.3 8.5 78 32-117 8-85 (89)
314 2bz2_A Negative elongation fac 99.7 1.6E-16 5.3E-21 117.7 9.9 79 31-118 35-113 (121)
315 3egn_A RNA-binding protein 40; 99.7 1E-16 3.5E-21 122.5 9.0 83 32-118 42-132 (143)
316 1fj7_A Nucleolin RBD1, protein 99.7 1.4E-17 4.8E-22 119.5 3.9 79 32-118 14-97 (101)
317 1fxl_A Paraneoplastic encephal 99.7 1.8E-16 6.1E-21 123.8 9.7 78 201-281 2-83 (167)
318 2hzc_A Splicing factor U2AF 65 99.7 1.1E-16 3.6E-21 111.6 7.5 73 32-112 3-86 (87)
319 2pe8_A Splicing factor 45; RRM 99.7 2.4E-16 8.4E-21 113.5 9.6 78 199-279 6-93 (105)
320 2f3j_A RNA and export factor b 99.7 3.3E-16 1.1E-20 123.7 11.1 84 31-117 84-168 (177)
321 3u1l_A PRE-mRNA-splicing facto 99.7 1.2E-16 4.1E-21 131.1 8.7 78 199-281 132-230 (240)
322 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.9E-21 124.6 8.6 79 200-281 2-84 (168)
323 3q2s_C Cleavage and polyadenyl 99.7 1.5E-16 5.2E-21 130.9 9.0 81 34-117 67-151 (229)
324 2dnn_A RNA-binding protein 12; 99.7 1.4E-16 4.9E-21 115.4 7.8 79 32-115 13-92 (109)
325 2dit_A HIV TAT specific factor 99.7 4.2E-16 1.5E-20 113.9 10.3 79 199-280 13-102 (112)
326 1wf0_A TDP-43, TAR DNA-binding 99.7 5.3E-17 1.8E-21 113.4 5.2 77 200-282 4-80 (88)
327 2xs2_A Deleted in azoospermia- 99.7 5.8E-17 2E-21 116.5 5.5 77 200-281 8-87 (102)
328 2hzc_A Splicing factor U2AF 65 99.7 1.3E-16 4.6E-21 111.1 7.1 70 200-275 5-85 (87)
329 2hgn_A Heterogeneous nuclear r 99.7 5.7E-17 2E-21 122.6 5.5 77 200-281 45-124 (139)
330 2lcw_A RNA-binding protein FUS 99.5 6.2E-18 2.1E-22 124.6 0.0 85 32-119 4-98 (116)
331 3pgw_A U1-A; protein-RNA compl 99.7 1.3E-15 4.4E-20 129.4 14.1 79 31-114 203-281 (282)
332 3u1l_A PRE-mRNA-splicing facto 99.7 2.7E-16 9.4E-21 129.0 9.5 81 31-118 130-231 (240)
333 2adc_A Polypyrimidine tract-bi 99.7 2.7E-16 9.3E-21 129.6 9.2 78 199-280 32-110 (229)
334 1iqt_A AUF1, heterogeneous nuc 99.7 6.2E-17 2.1E-21 109.5 4.4 73 37-113 1-75 (75)
335 2lmi_A GRSF-1, G-rich sequence 99.6 1.1E-16 3.8E-21 116.0 5.6 81 32-116 8-92 (107)
336 2dha_A FLJ20171 protein; RRM d 99.6 1.2E-16 4.2E-21 118.3 5.6 76 200-279 22-104 (123)
337 2hgm_A HNRPF protein, heteroge 99.6 2.5E-16 8.5E-21 116.9 7.2 76 200-280 41-121 (126)
338 2xs2_A Deleted in azoospermia- 99.6 2.6E-16 8.7E-21 113.1 6.8 82 32-118 6-88 (102)
339 3nmr_A Cugbp ELAV-like family 99.6 1.1E-15 3.6E-20 120.3 10.6 82 200-281 2-89 (175)
340 3md3_A Nuclear and cytoplasmic 99.6 1.7E-15 5.8E-20 118.0 11.4 81 31-114 83-165 (166)
341 2dha_A FLJ20171 protein; RRM d 99.6 4.9E-16 1.7E-20 115.0 7.8 80 32-115 20-104 (123)
342 1qm9_A Polypyrimidine tract-bi 99.6 6.7E-16 2.3E-20 124.3 8.1 76 201-280 3-79 (198)
343 2yh0_A Splicing factor U2AF 65 99.6 8.2E-15 2.8E-19 117.7 14.0 83 32-117 111-195 (198)
344 2hgm_A HNRPF protein, heteroge 99.6 9.2E-16 3.1E-20 113.8 7.4 80 31-115 38-120 (126)
345 2qfj_A FBP-interacting repress 99.6 4.6E-15 1.6E-19 120.8 12.2 84 33-119 123-208 (216)
346 2hgn_A Heterogeneous nuclear r 99.6 2.3E-16 8E-21 119.2 4.2 80 32-116 43-123 (139)
347 2j8a_A Histone-lysine N-methyl 99.6 5.4E-16 1.8E-20 113.2 5.8 77 202-281 3-97 (136)
348 2dnl_A Cytoplasmic polyadenyla 99.6 1.2E-15 4.2E-20 111.8 7.8 59 200-259 7-72 (114)
349 3pgw_S U1-70K; protein-RNA com 99.6 2.7E-15 9.4E-20 134.6 11.4 84 32-118 99-184 (437)
350 1l3k_A Heterogeneous nuclear r 99.6 1.8E-15 6.3E-20 121.3 8.8 77 200-280 12-92 (196)
351 3v4m_A Splicing factor U2AF 65 99.6 2.3E-15 7.8E-20 108.4 8.1 78 199-279 3-96 (105)
352 2g4b_A Splicing factor U2AF 65 99.6 5.6E-15 1.9E-19 115.9 11.0 78 33-113 92-171 (172)
353 2voo_A Lupus LA protein; RNA-b 99.6 2.5E-15 8.4E-20 120.4 8.4 76 201-280 109-187 (193)
354 2dnl_A Cytoplasmic polyadenyla 99.6 2.5E-15 8.5E-20 110.1 7.3 76 32-113 5-85 (114)
355 3tht_A Alkylated DNA repair pr 99.6 2.8E-15 9.6E-20 129.4 8.6 79 198-278 15-97 (345)
356 2pe8_A Splicing factor 45; RRM 99.6 1.3E-14 4.5E-19 104.4 10.4 82 32-116 5-94 (105)
357 3sde_A Paraspeckle component 1 99.6 6.2E-15 2.1E-19 123.9 9.5 77 199-280 20-96 (261)
358 2dit_A HIV TAT specific factor 99.6 2.6E-14 8.9E-19 104.3 11.1 84 32-120 12-106 (112)
359 2j8a_A Histone-lysine N-methyl 99.6 8.5E-15 2.9E-19 106.9 7.7 77 36-115 3-95 (136)
360 2cjk_A Nuclear polyadenylated 99.6 5.2E-15 1.8E-19 115.5 7.1 80 33-116 85-166 (167)
361 1fje_B Nucleolin RBD12, protei 99.5 7.6E-15 2.6E-19 115.6 7.5 79 32-116 96-174 (175)
362 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.9E-14 2E-18 99.8 11.3 76 201-282 10-92 (100)
363 2voo_A Lupus LA protein; RNA-b 99.5 2.9E-14 9.8E-19 114.2 10.2 81 34-118 108-189 (193)
364 3s6e_A RNA-binding protein 39; 99.5 2.6E-14 9E-19 104.1 9.1 77 200-279 6-92 (114)
365 3tht_A Alkylated DNA repair pr 99.5 2E-14 6.7E-19 124.1 9.4 79 32-114 15-97 (345)
366 3ue2_A Poly(U)-binding-splicin 99.5 3.8E-14 1.3E-18 104.0 8.5 76 200-278 19-107 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.2E-13 1.1E-17 96.0 11.5 78 33-118 8-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.5 8.8E-15 3E-19 105.2 2.1 69 206-277 20-103 (104)
369 3v4m_A Splicing factor U2AF 65 99.5 1.8E-13 6.2E-18 98.4 8.7 81 33-116 3-97 (105)
370 3ue2_A Poly(U)-binding-splicin 99.4 7E-13 2.4E-17 97.2 9.3 79 34-115 19-108 (118)
371 2dnr_A Synaptojanin-1; RRM dom 99.4 8.4E-13 2.9E-17 90.3 7.6 76 197-280 3-86 (91)
372 1owx_A Lupus LA protein, SS-B, 99.4 2.4E-12 8.1E-17 93.9 9.9 76 197-277 14-93 (121)
373 1jmt_A Splicing factor U2AF 35 99.4 5.1E-13 1.8E-17 95.9 5.3 71 40-113 20-103 (104)
374 3s6e_A RNA-binding protein 39; 99.3 4.5E-12 1.5E-16 92.2 9.2 78 33-116 5-93 (114)
375 1owx_A Lupus LA protein, SS-B, 99.3 2.8E-11 9.7E-16 88.2 9.3 76 32-114 15-94 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.2 1.3E-11 4.5E-16 84.7 5.5 74 196-277 10-92 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.2 8.6E-11 2.9E-15 80.3 7.1 75 32-116 4-86 (91)
378 3dxb_A Thioredoxin N-terminall 99.0 1.6E-09 5.5E-14 88.4 10.2 75 201-278 124-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 1.3E-09 4.4E-14 74.8 5.8 72 32-113 12-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.7 7.3E-08 2.5E-12 78.5 8.9 66 47-115 141-212 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.6 3.5E-07 1.2E-11 64.1 8.3 71 201-276 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 6.8E-07 2.3E-11 62.6 7.6 71 35-112 21-96 (117)
383 1wey_A Calcipressin 1; structu 98.2 1.2E-06 4.2E-11 61.1 4.6 73 201-278 5-82 (104)
384 1whv_A Poly(A)-specific ribonu 98.2 1.1E-05 3.7E-10 55.4 8.8 55 35-96 16-70 (100)
385 1uw4_A UPF3X; nonsense mediate 98.2 1.2E-05 4.3E-10 55.1 9.1 77 202-278 2-86 (91)
386 1uw4_A UPF3X; nonsense mediate 98.1 2.6E-05 8.8E-10 53.5 9.2 78 36-113 2-85 (91)
387 1whv_A Poly(A)-specific ribonu 98.0 2.5E-05 8.5E-10 53.6 7.9 55 201-260 16-70 (100)
388 3ctr_A Poly(A)-specific ribonu 97.9 1.6E-05 5.4E-10 54.7 4.9 54 36-96 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.8 3.3E-05 1.1E-09 53.9 5.7 74 36-116 6-84 (104)
390 2dhx_A Poly (ADP-ribose) polym 97.8 9.6E-05 3.3E-09 51.3 7.9 54 201-258 8-66 (104)
391 3ctr_A Poly(A)-specific ribonu 97.8 1.8E-05 6E-10 54.5 3.4 55 201-260 6-60 (101)
392 2l08_A Regulator of nonsense t 97.7 7.6E-05 2.6E-09 51.4 5.5 78 201-278 9-94 (97)
393 2dhx_A Poly (ADP-ribose) polym 97.7 0.001 3.4E-08 46.2 11.1 72 33-114 6-82 (104)
394 2l08_A Regulator of nonsense t 97.6 0.00013 4.6E-09 50.2 5.9 79 35-113 9-93 (97)
395 1wwh_A Nucleoporin 35, nucleop 97.4 0.00057 2E-08 49.0 7.4 61 201-265 24-84 (119)
396 3pq1_A Poly(A) RNA polymerase; 97.0 0.00034 1.2E-08 62.4 3.4 55 35-93 53-107 (464)
397 1wwh_A Nucleoporin 35, nucleop 96.9 0.0071 2.4E-07 43.3 8.5 62 34-101 23-84 (119)
398 3pq1_A Poly(A) RNA polymerase; 96.8 0.00061 2.1E-08 60.8 3.3 56 201-258 53-108 (464)
399 3p3d_A Nucleoporin 53; structu 95.5 0.0085 2.9E-07 43.5 3.0 72 201-277 7-96 (132)
400 3d45_A Poly(A)-specific ribonu 94.9 0.072 2.5E-06 48.3 7.8 55 35-96 440-494 (507)
401 3p3d_A Nucleoporin 53; structu 94.8 0.061 2.1E-06 39.0 5.8 72 35-114 7-97 (132)
402 3d45_A Poly(A)-specific ribonu 93.6 0.17 5.9E-06 45.9 7.5 57 201-262 440-496 (507)
403 2g0c_A ATP-dependent RNA helic 83.8 3.2 0.00011 26.6 5.8 67 203-278 2-75 (76)
404 2g0c_A ATP-dependent RNA helic 73.7 10 0.00035 24.1 5.9 58 47-114 13-75 (76)
405 4eyt_A Telomerase associated p 64.7 28 0.00095 23.1 8.9 55 201-259 12-66 (129)
406 3fry_A Probable copper-exporti 56.4 22 0.00076 21.8 4.9 59 201-263 6-64 (73)
407 4e8u_A Putative uncharacterize 56.3 25 0.00084 26.6 5.6 49 38-87 15-74 (172)
408 4e8u_A Putative uncharacterize 53.4 26 0.00088 26.5 5.3 47 203-249 14-72 (172)
409 4eyt_A Telomerase associated p 52.9 47 0.0016 22.0 8.1 58 32-95 9-66 (129)
410 2f9f_A First mannosyl transfer 39.9 59 0.002 23.8 5.7 31 32-62 21-51 (177)
411 3dxs_X Copper-transporting ATP 38.7 64 0.0022 19.4 5.9 56 202-259 4-63 (74)
412 3uzu_A Ribosomal RNA small sub 36.5 17 0.00059 29.8 2.2 34 36-69 115-148 (279)
413 3fut_A Dimethyladenosine trans 34.7 33 0.0011 28.0 3.7 32 36-68 111-142 (271)
414 2lfv_A Protein DAMX; cell divi 40.3 8.5 0.00029 26.6 0.0 52 47-99 34-88 (106)
415 2f06_A Conserved hypothetical 33.1 1.3E+02 0.0044 21.3 6.5 50 215-265 86-136 (144)
416 4a4j_A Pacszia, cation-transpo 32.3 60 0.0021 19.2 3.9 56 202-259 4-62 (69)
417 2e7g_A Putative ribosome-bindi 32.2 65 0.0022 22.9 4.5 36 225-260 43-79 (129)
418 2ki0_A DS119; beta-alpha-beta, 28.9 26 0.00087 18.0 1.3 12 34-45 4-15 (36)
419 3ts2_A Protein LIN-28 homolog 28.8 8.9 0.00031 28.3 -0.7 28 50-83 2-29 (148)
420 3tqs_A Ribosomal RNA small sub 28.7 24 0.0008 28.5 1.8 32 37-68 98-129 (255)
421 2l3m_A Copper-ION-binding prot 27.5 96 0.0033 18.0 6.0 56 202-259 7-66 (71)
422 1yg0_A COP associated protein; 26.8 93 0.0032 17.6 5.4 55 203-259 4-61 (66)
423 1qyr_A KSGA, high level kasuga 24.4 53 0.0018 26.3 3.2 33 36-68 91-123 (252)
424 1i4w_A Mitochondrial replicati 24.0 42 0.0014 28.6 2.6 23 36-58 143-165 (353)
425 3ftd_A Dimethyladenosine trans 23.5 52 0.0018 26.3 2.9 33 36-68 96-128 (249)
426 1cqm_A Ribosomal protein S6; a 23.4 87 0.003 21.1 3.7 54 203-258 6-77 (101)
427 2g9o_A Copper-transporting ATP 23.3 1.5E+02 0.005 18.8 4.8 56 202-259 5-64 (90)
428 2xmw_A PACS-N, cation-transpor 22.8 1.2E+02 0.004 17.5 6.0 56 202-259 5-63 (71)
429 1aw0_A Menkes copper-transport 20.8 1.3E+02 0.0046 17.3 4.6 55 203-259 6-64 (72)
430 1cpz_A Protein (COPZ); copper 20.7 1.3E+02 0.0044 17.1 7.0 55 203-259 3-61 (68)
431 4bby_A Alkyldihydroxyacetoneph 20.6 69 0.0024 29.8 3.5 53 209-261 351-410 (658)
432 3lpe_A Putative transcription 20.6 80 0.0027 20.9 2.9 26 237-262 48-73 (92)
433 3d53_A Inorganic pyrophosphata 20.3 1.5E+02 0.0051 22.3 4.7 39 214-259 131-169 (173)
434 2e5p_A Protein PHF1, PHD finge 20.1 44 0.0015 20.8 1.3 8 77-84 39-46 (68)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.5e-37 Score=252.62 Aligned_cols=166 Identities=19% Similarity=0.217 Sum_probs=142.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..|.++|||+|||.++||++|+++|++||.|.+|+|..+...+. +||||+|.+.++|.+|++.+++..+. |+.++
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~---g~~i~ 88 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIK---GKPVR 88 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcC---Ccccc
Confidence 44679999999999999999999999999999999986543332 39999999999999999999999998 99999
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
+.++.........
T Consensus 89 ~~~~~~~~~~~~~------------------------------------------------------------------- 101 (213)
T 4f02_A 89 IMWSQRDPSLRKS------------------------------------------------------------------- 101 (213)
T ss_dssp EEECCCCTHHHHH-------------------------------------------------------------------
T ss_pred ccccccccccccc-------------------------------------------------------------------
Confidence 9877543221000
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
..++|||+|||.++|+++|+++|+.||.|..|+++.+. +++||||+|.+.++|.+|++.|||..|+|+
T Consensus 102 ----------~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~ 171 (213)
T 4f02_A 102 ----------GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR 171 (213)
T ss_dssp ----------CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred ----------ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 14589999999999999999999999999999988743 467999999999999999999999999988
Q ss_pred CCCcEEEEEeecc
Q 023320 268 DRGGMHIEYARSK 280 (284)
Q Consensus 268 ~~~~l~v~~ak~~ 280 (284)
.|+|.||+.+
T Consensus 172 ---~i~V~~a~~~ 181 (213)
T 4f02_A 172 ---KVFVGRFKSR 181 (213)
T ss_dssp ---ECEEEECCCH
T ss_pred ---EEEEEEcCCC
Confidence 9999999765
No 2
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.3e-35 Score=253.35 Aligned_cols=241 Identities=17% Similarity=0.245 Sum_probs=155.2
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
++.+++++|||+|||+++|+++|+ ++|+.||.|..|++....+ .++||||+|.+.++|.+|++.|+|..+. |
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~---g 79 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLK-MRGQAFVIFKEVSSATNALRSMQGFPFY---D 79 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCC-cceEEEEEECCHHHHHHHHHHhcCCeeC---C
Confidence 456779999999999999999966 8999999999998874222 2239999999999999999999999998 9
Q ss_pred CeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCC-----CCC------CCCCCCCCC--CCCCCCCCC----CC
Q 023320 106 SVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESS-----SAD------GDSDTDEAS--PVRNIDSAD----KG 168 (284)
Q Consensus 106 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~------~~~~~~~~~--~~~~~~~~~----~~ 168 (284)
+.|+|.|++........ ..+.+..........+...... ... ......... ......... ..
T Consensus 80 ~~l~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (282)
T 3pgw_A 80 KPMRIQYAKTDSDIIAK-MKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMP 158 (282)
T ss_pred cEEEEEEeccCcchhhh-hcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCC
Confidence 99999999776643322 2222211111111100000000 000 000000000 000000000 00
Q ss_pred CCCCCcCccc------CCCCCCC----------CCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEE
Q 023320 169 DFVTTQSERA------TDSGNAV----------APINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK 232 (284)
Q Consensus 169 ~~~~~~~~~~------~~~~~~~----------~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~ 232 (284)
+...+...+. ..+.... .............+++++|||+|||..+|+++|+++|+.||.|.+|+
T Consensus 159 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~ 238 (282)
T 3pgw_A 159 GQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 238 (282)
T ss_pred CCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE
Confidence 0000000000 0000000 00011112233455689999999999999999999999999999999
Q ss_pred EEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC-CCCCCcEEEEEeec
Q 023320 233 MRARGGMPVAFADFEEVEQASIAMEGLQDSTLP-SSDRGGMHIEYARS 279 (284)
Q Consensus 233 ~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~-~~~~~~l~v~~ak~ 279 (284)
+..++ ++||||+|.+.++|.+|++.|||..|. |+ .|+|+|||.
T Consensus 239 ~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~akk 282 (282)
T 3pgw_A 239 LVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNN---AMKISFAKK 282 (282)
T ss_pred EecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEEEecC
Confidence 98654 589999999999999999999999999 77 999999984
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=7.7e-36 Score=247.32 Aligned_cols=198 Identities=19% Similarity=0.299 Sum_probs=151.5
Q ss_pred CCCCCCCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 30 QQDNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+++++|||+|||. .+|+++|+++|+.||.|..|++..+.++ ||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g---~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE---NALVQMADGNQAQLAMSHLNGHKLH---GKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSC---CEEEEESCHHHHHHHHHHHTTCBCS---SSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEE
Confidence 3356789999999999 9999999999999999999999965555 9999999999999999999999998 9999
Q ss_pred EEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (284)
+|.+++.......+.... .....+. .... ...... .+
T Consensus 103 ~v~~a~~~~~~~~~~~~~-------~~~~~~~----~~~~----~~~~~~---------------------~~------- 139 (229)
T 2adc_A 103 RITLSKHQNVQLPREGQE-------DQGLTKD----YGNS----PLHRFK---------------------KP------- 139 (229)
T ss_dssp EEECCSCCCCCCCCSSSS-------TTTTEEE----CTTC----SSCCCC---------------------ST-------
T ss_pred EEEEecCccccCcccccc-------ccccccc----cccC----cccccC---------------------Cc-------
Confidence 999997664432210000 0000000 0000 000000 00
Q ss_pred CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC-C
Q 023320 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP-S 266 (284)
Q Consensus 189 ~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~-~ 266 (284)
.........+++++|||+|||..+|+++|+++|+.|| .|..|+++.+ +++||||+|.+.++|.+|++.|||..+. +
T Consensus 140 -~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 140 -GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp -TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred -cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 0000112234689999999999999999999999999 9999998663 3589999999999999999999999998 7
Q ss_pred CCCCcEEEEEeeccc
Q 023320 267 SDRGGMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~ 281 (284)
+ .|+|+|++.++
T Consensus 218 ~---~l~v~~a~~~i 229 (229)
T 2adc_A 218 H---HLRVSFSKSTI 229 (229)
T ss_dssp C---BCEEEECSSCC
T ss_pred C---eEEEEEecCCC
Confidence 7 99999999764
No 4
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.4e-35 Score=241.06 Aligned_cols=197 Identities=11% Similarity=0.117 Sum_probs=145.4
Q ss_pred CCCCeEEEcCCC-CcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 33 NGINTLFVSGLP-DDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 33 ~~~~~lfV~nLp-~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.++++|||+||| ..+|+++|+++|+.||.|.+|++..+.++ ||||+|.+.++|+.|++.|||..+. |+.|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g---~afV~f~~~~~A~~Ai~~lng~~~~---g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG---AAMVEMADGYAVDRAITHLNNNFMF---GQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTT---CEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CceEEEE
Confidence 368899999999 89999999999999999999999855556 9999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
+++......+. . ... .......+. .. .. . ...+.....
T Consensus 76 ~s~~~~~~p~~-~---~~~-~~~~~~~~~------~~---~~------------~---~~r~~~~~~------------- 113 (205)
T 3tyt_A 76 VSKQPAIMPGQ-S---YGL-EDGSCSYKD------FS---ES------------R---NNRFSTPEQ------------- 113 (205)
T ss_dssp ECSCSCCCCCS-C---CBC-TTSCBSEEE------CT---TC------------T---TCSCSSHHH-------------
T ss_pred EccCCccCCCc-c---ccc-ccCCccccc------cC---CC------------c---cccccCccc-------------
Confidence 98765431111 0 000 000000000 00 00 0 000000000
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCc--eEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGF--NMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v--~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.......+|+++|||+|||+++|+++|+++|++||.| .+|++..+ .+++||||+|.+.++|.+||..|||..|.++
T Consensus 114 ~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 114 AAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp HTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred ccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 0001123468899999999999999999999999999 89998874 3457999999999999999999999999988
Q ss_pred CCC-cEEEEEe
Q 023320 268 DRG-GMHIEYA 277 (284)
Q Consensus 268 ~~~-~l~v~~a 277 (284)
++. ++.|.||
T Consensus 194 ~~~~p~~vk~~ 204 (205)
T 3tyt_A 194 NGPYPYTLKLC 204 (205)
T ss_dssp SSSSCEECEEE
T ss_pred CCCcceEEEec
Confidence 443 7777765
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-35 Score=231.38 Aligned_cols=161 Identities=18% Similarity=0.319 Sum_probs=140.6
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
|+|||+|||.++|+++|+++|+.||.|.+|++..+..++ .+||||+|.+.++|.+|++.++|..+. |+.|.+.++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~~~~ 77 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIE---NNIVKINWAF 77 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEECC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccC---CCeeEEEEcC
Confidence 689999999999999999999999999999998543322 239999999999999999999999998 9999999875
Q ss_pred cCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCC
Q 023320 115 SNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPY 194 (284)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (284)
.....
T Consensus 78 ~~~~~--------------------------------------------------------------------------- 82 (166)
T 3md3_A 78 QSQQS--------------------------------------------------------------------------- 82 (166)
T ss_dssp CCCCC---------------------------------------------------------------------------
T ss_pred CCCCC---------------------------------------------------------------------------
Confidence 43210
Q ss_pred CCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 195 EGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 195 ~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
...+.++|||+|||..+|+++|+++|+.||.|.++.+..+ .+++||||+|.+.++|.+|++.|||..|+|+
T Consensus 83 --~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~--- 157 (166)
T 3md3_A 83 --SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR--- 157 (166)
T ss_dssp --CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE---
T ss_pred --CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc---
Confidence 0013678999999999999999999999999999998863 4467999999999999999999999999977
Q ss_pred cEEEEEeec
Q 023320 271 GMHIEYARS 279 (284)
Q Consensus 271 ~l~v~~ak~ 279 (284)
.|+|+||+.
T Consensus 158 ~i~v~~a~~ 166 (166)
T 3md3_A 158 PLRINWAAK 166 (166)
T ss_dssp ECEEEESCC
T ss_pred EEEEEecCC
Confidence 999999973
No 6
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=9.9e-35 Score=235.29 Aligned_cols=193 Identities=19% Similarity=0.302 Sum_probs=148.6
Q ss_pred CCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 35 INTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 35 ~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+++|||+|||. .+|+++|+++|+.||.|..|++..+.++ ||||+|.+.++|.+|++.|+|..+. |+.|+|.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE---NALVQMADGNQAQLAMSHLNGHKLH---GKPIRITLS 76 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSS---CCEEECTTTHHHHHHHHHHTTCCCS---SCCCEEEEC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCC---EEEEEECCHHHHHHHHHHhCCCeec---CeEEEEEEe
Confidence 68999999999 9999999999999999999999855555 9999999999999999999999998 999999999
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (284)
............. .....+. .+. .... ... . .....
T Consensus 77 ~~~~~~~~~~~~~-------~~~~~~~----~~~----~~~~----------------r~~-----~--------~~~~~ 112 (198)
T 1qm9_A 77 KHQNVQLPREGQE-------DQGLTKD----YGN----SPLH----------------RFK-----K--------PGSKN 112 (198)
T ss_dssp CCCSCCCSSSSSS-------SSSCEEE----SSC----CCTT----------------SSS-----S--------CCCCC
T ss_pred cCCCcCCCCcCCc-------ccccccc----ccC----Cchh----------------hcc-----C--------ccccc
Confidence 8765432210000 0000000 000 0000 000 0 00000
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC-CCCCCc
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP-SSDRGG 271 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~-~~~~~~ 271 (284)
.....+++++|||+|||..+|+++|+++|+.|| .|..|++..+ ++++|||+|.+.++|.+|++.|||..+. ++ .
T Consensus 113 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~---~ 188 (198)
T 1qm9_A 113 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENH---H 188 (198)
T ss_dssp CSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCC---S
T ss_pred cccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCC---e
Confidence 112235689999999999999999999999999 9999998764 3689999999999999999999999998 77 9
Q ss_pred EEEEEeeccc
Q 023320 272 MHIEYARSKM 281 (284)
Q Consensus 272 l~v~~ak~~~ 281 (284)
|+|+|++.++
T Consensus 189 l~v~~a~~~i 198 (198)
T 1qm9_A 189 LRVSFSKSTI 198 (198)
T ss_dssp CCEEEECCCC
T ss_pred EEEEeecccC
Confidence 9999999764
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=3.5e-34 Score=227.14 Aligned_cols=166 Identities=18% Similarity=0.284 Sum_probs=139.3
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC----eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN----QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~----~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
++++|||+|||.++|+++|+++|++||.|.+|++..+..++ ++||||+|.+.++|.+|++.|+|..+....++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999998654442 23999999999999999999999888544467777
Q ss_pred EEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCC
Q 023320 110 IELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPIN 189 (284)
Q Consensus 110 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (284)
+.++.......
T Consensus 82 ~~~~~~~~~~~--------------------------------------------------------------------- 92 (175)
T 3nmr_A 82 MKPADSEKNNA--------------------------------------------------------------------- 92 (175)
T ss_dssp EEECGGGCCSC---------------------------------------------------------------------
T ss_pred Ecccccccccc---------------------------------------------------------------------
Confidence 76654332100
Q ss_pred CCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 190 SEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 190 ~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
...++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..+.+
T Consensus 93 ---------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 93 ---------VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp ---------GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ---------CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 12678999999999999999999999999999998874 346799999999999999999999998874
Q ss_pred CCCCcEEEEEe
Q 023320 267 SDRGGMHIEYA 277 (284)
Q Consensus 267 ~~~~~l~v~~a 277 (284)
..+.+|+|.||
T Consensus 164 g~~~~l~V~~a 174 (175)
T 3nmr_A 164 GCSSPMVVKFA 174 (175)
T ss_dssp TCSSCCEEEEC
T ss_pred CCCCCeEEEec
Confidence 22349999997
No 8
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.8e-34 Score=225.52 Aligned_cols=161 Identities=22% Similarity=0.343 Sum_probs=140.9
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
++++|||+|||.++|+++|+++|+.||.|..|++..+..++.. ||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVR---NKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeC---CcEEEEE
Confidence 5799999999999999999999999999999999865433322 9999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
|+......
T Consensus 79 ~~~~~~~~------------------------------------------------------------------------ 86 (168)
T 1b7f_A 79 YARPGGES------------------------------------------------------------------------ 86 (168)
T ss_dssp ECCCCSST------------------------------------------------------------------------
T ss_pred ecCCCccc------------------------------------------------------------------------
Confidence 88543210
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC----CcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+.++|||+|||..+|+++|+++|++||.|..+.+..+. +++||||+|.+.++|.+|++.|||..+.|.
T Consensus 87 -------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 159 (168)
T 1b7f_A 87 -------IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 159 (168)
T ss_dssp -------TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred -------CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC
Confidence 126789999999999999999999999999999988743 357999999999999999999999999873
Q ss_pred CCCcEEEEEe
Q 023320 268 DRGGMHIEYA 277 (284)
Q Consensus 268 ~~~~l~v~~a 277 (284)
+.+|+|+||
T Consensus 160 -~~~l~V~~A 168 (168)
T 1b7f_A 160 -SQPLSVRLA 168 (168)
T ss_dssp -SSCCEEEEC
T ss_pred -CeEEEEEeC
Confidence 349999997
No 9
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.5e-34 Score=223.12 Aligned_cols=160 Identities=22% Similarity=0.371 Sum_probs=139.6
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
.++|||+|||.++|+++|+++|+.||.|..+++..+...+. +||||+|.+.++|.+|++.|+|..+. |+.|+|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQ---TKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccC---CceEEEEe
Confidence 68999999999999999999999999999999985542332 39999999999999999999999998 99999998
Q ss_pred eecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCC
Q 023320 113 ARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEK 192 (284)
Q Consensus 113 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (284)
+......
T Consensus 79 ~~~~~~~------------------------------------------------------------------------- 85 (167)
T 1fxl_A 79 ARPSSAS------------------------------------------------------------------------- 85 (167)
T ss_dssp CCCCCGG-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 7543110
Q ss_pred CCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 193 PYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 193 ~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
...++|||+|||..+|+++|+++|++||.|..+++..+. +++||||+|.+.++|.+|++.|||..+.|+
T Consensus 86 ------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~- 158 (167)
T 1fxl_A 86 ------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA- 158 (167)
T ss_dssp ------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-
T ss_pred ------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC-
Confidence 025689999999999999999999999999999988743 467999999999999999999999999976
Q ss_pred CCcEEEEEe
Q 023320 269 RGGMHIEYA 277 (284)
Q Consensus 269 ~~~l~v~~a 277 (284)
..+|+|+||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 346999986
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.9e-34 Score=233.17 Aligned_cols=176 Identities=11% Similarity=0.197 Sum_probs=143.3
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC--CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++++|||+|||.++|+++|+++|+.||.|..|++..+... .++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~---g~~l~v 102 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLG---GRNIKV 102 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC----CCCEE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeC---CeeEEE
Confidence 44689999999999999999999999999999999744211 1229999999999999999999999998 999999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.++......... .....
T Consensus 103 ~~~~~~~~~~~~------------~~~~~--------------------------------------------------- 119 (216)
T 2qfj_A 103 GRPSNIGQAQPI------------IDQLA--------------------------------------------------- 119 (216)
T ss_dssp ECCSCCGGGHHH------------HHHHH---------------------------------------------------
T ss_pred ecCCCccccchh------------hhhhh---------------------------------------------------
Confidence 876543211000 00000
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
....+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|+|
T Consensus 120 -----~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 120 -----EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp -----HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred -----cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 00013679999999999999999999999999999999874 346799999999999999999999999998
Q ss_pred CCCCcEEEEEeecccc
Q 023320 267 SDRGGMHIEYARSKMR 282 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~~ 282 (284)
+ .|+|+|++.+..
T Consensus 195 ~---~i~V~~a~~~~~ 207 (216)
T 2qfj_A 195 Q---YLRVGKAVTPPM 207 (216)
T ss_dssp S---BCEEEECSSCSS
T ss_pred c---EEEEEEecCCCC
Confidence 8 999999988754
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.6e-33 Score=227.56 Aligned_cols=170 Identities=17% Similarity=0.285 Sum_probs=139.7
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..++.++|||+|||.++|+++|+++|+.||.|..|++..+..++ .+||||+|.+.++|.+|++. ++..+. |+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~---g~~l 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVD---GRVV 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEEC---CEEe
Confidence 35568999999999999999999999999999999998653333 23999999999999999976 899998 9999
Q ss_pred EEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCC
Q 023320 109 HIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPI 188 (284)
Q Consensus 109 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (284)
.|.++.........
T Consensus 85 ~v~~~~~~~~~~~~------------------------------------------------------------------ 98 (196)
T 1l3k_A 85 EPKRAVSREDSQRP------------------------------------------------------------------ 98 (196)
T ss_dssp EEEECCC-------------------------------------------------------------------------
T ss_pred eeecccCccccccc------------------------------------------------------------------
Confidence 99987654221100
Q ss_pred CCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 189 NSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 189 ~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
....+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++. +|..|
T Consensus 99 -------~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~ 170 (196)
T 1l3k_A 99 -------GAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV 170 (196)
T ss_dssp -----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE
T ss_pred -------ccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE
Confidence 00113679999999999999999999999999999999874 3467999999999999999987 79999
Q ss_pred CCCCCCcEEEEEeeccc
Q 023320 265 PSSDRGGMHIEYARSKM 281 (284)
Q Consensus 265 ~~~~~~~l~v~~ak~~~ 281 (284)
+|+ .|.|.||..+.
T Consensus 171 ~G~---~i~v~~a~~k~ 184 (196)
T 1l3k_A 171 NGH---NCEVRKALSKQ 184 (196)
T ss_dssp TTE---ECEEEECC---
T ss_pred CCE---EEEEEecCChh
Confidence 987 99999997664
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.6e-33 Score=226.71 Aligned_cols=181 Identities=17% Similarity=0.274 Sum_probs=142.9
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
..+++|||+|||.++|+++|+++|+.| | .|..+.+. ..++ ||||+|.+.++|.+|+ .|+|..+.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~-~~~g---~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE-TTTT---EEEEEESCSHHHHHHG-GGTTEEET
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec-CCCC---EEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 357999999999999999999999999 5 56666664 4566 9999999999999999 89999998
Q ss_pred CCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCC
Q 023320 102 PQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDS 181 (284)
Q Consensus 102 ~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (284)
|+.|+|.++.......... .. .... .
T Consensus 77 ---g~~i~v~~~~~~~~~~~~~---------------~~----~~~~---------~----------------------- 102 (198)
T 2yh0_A 77 ---GQSLKIRRPHDYQPLPGMS---------------EN----PSVY---------V----------------------- 102 (198)
T ss_dssp ---TEEEEEECCCCCCCCCCSS---------------SC----SSCC---------C-----------------------
T ss_pred ---CceEEEeCCCCCCCCCCCc---------------CC----CcCC---------C-----------------------
Confidence 9999999876553221110 00 0000 0
Q ss_pred CCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC----CcCeEEEEeCCHHHHHHHHH
Q 023320 182 GNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAME 257 (284)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~A~~ 257 (284)
+.........+.++|||+|||..+|+++|+++|+.||.|..|.+..+. +++||||+|.+.++|.+|++
T Consensus 103 --------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 103 --------PGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp --------TTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHH
T ss_pred --------CCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHH
Confidence 000011112357899999999999999999999999999999988742 36799999999999999999
Q ss_pred HhCCCccCCCCCCcEEEEEeeccccC
Q 023320 258 GLQDSTLPSSDRGGMHIEYARSKMRK 283 (284)
Q Consensus 258 ~lng~~~~~~~~~~l~v~~ak~~~~~ 283 (284)
.|||..|+|+ .|+|+||+.+.++
T Consensus 175 ~l~g~~~~g~---~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 175 GLNGMQLGDK---KLLVQRASVGAKN 197 (198)
T ss_dssp HHTTCEETTE---ECEEEESCCCCCC
T ss_pred HcCCCEECCE---EEEEEECCCCCCC
Confidence 9999999987 9999999987654
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.5e-34 Score=226.84 Aligned_cols=164 Identities=22% Similarity=0.291 Sum_probs=138.2
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe----eeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK----YTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~----~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
.+...+.++|||+|||.++|+++|+++|+.||.+..+.+. ...++ ||||+|.+.++|.+|+ .|+|..+.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g---~afV~f~~~~~a~~A~-~l~g~~~~--- 79 (175)
T 1fje_B 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRK---FGYVDFESAEDLEKAL-ELTGLKVF--- 79 (175)
T ss_dssp SSSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTT---EEEEEESSHHHHHHHH-HGGGEEET---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCcccc---EEEEEECCHHHHHHHH-hcCCCEeC---
Confidence 3456678999999999999999999999999876442222 12445 9999999999999999 59999998
Q ss_pred CCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCC
Q 023320 105 GSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNA 184 (284)
Q Consensus 105 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (284)
|+.|+|.++.......
T Consensus 80 g~~l~v~~~~~~~~~~---------------------------------------------------------------- 95 (175)
T 1fje_B 80 GNEIKLEKPKGRDSKK---------------------------------------------------------------- 95 (175)
T ss_dssp TEEEEEECCCCSSCST----------------------------------------------------------------
T ss_pred CeEEEEecCCCccccc----------------------------------------------------------------
Confidence 9999999886542110
Q ss_pred CCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCcc
Q 023320 185 VAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL 264 (284)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~ 264 (284)
..+.++|||+|||.++|+++|+++|+.||.|..+ ...+.+++||||+|.+.++|.+|++.|||..|
T Consensus 96 -------------~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 96 -------------VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp -------------TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred -------------cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 0127799999999999999999999999999887 33366778999999999999999999999999
Q ss_pred CCCCCCcEEEEEeecc
Q 023320 265 PSSDRGGMHIEYARSK 280 (284)
Q Consensus 265 ~~~~~~~l~v~~ak~~ 280 (284)
.|+ .|+|+||+.|
T Consensus 162 ~g~---~i~v~~a~~k 174 (175)
T 1fje_B 162 DGR---SVSLYYTGEK 174 (175)
T ss_dssp TTE---EEEEEECSSC
T ss_pred CCe---EEEEEecCCC
Confidence 987 9999999876
No 14
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.6e-33 Score=219.75 Aligned_cols=154 Identities=18% Similarity=0.345 Sum_probs=135.2
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
++++|||+|||.++|+++|+++|++| | .|..+++. .+++ ||||+|.+.++|.+|+ .++|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-~~~g---~afV~f~~~~~A~~A~-~~~~~~~~- 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIFQ- 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-TTTT---EEEEEESSHHHHHHHG-GGTTCEET-
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-CCCC---EEEEEeCCHHHHHHHH-HhCCcEec-
Confidence 57899999999999999999999999 6 67777665 4566 9999999999999999 89999998
Q ss_pred CCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCC
Q 023320 103 QSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSG 182 (284)
Q Consensus 103 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (284)
|+.|+|.++......
T Consensus 77 --g~~i~v~~~~~~~~~--------------------------------------------------------------- 91 (172)
T 2g4b_A 77 --GQSLKIRRPHDYQPL--------------------------------------------------------------- 91 (172)
T ss_dssp --TEECEEECCSSCCCC---------------------------------------------------------------
T ss_pred --CceeeecCCcccCCC---------------------------------------------------------------
Confidence 999999865322110
Q ss_pred CCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHH
Q 023320 183 NAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~ 258 (284)
...++|||+|||..+|+++|+++|++||.|..+.+..+ .+++||||+|.+.++|.+|++.
T Consensus 92 ----------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (172)
T 2g4b_A 92 ----------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 155 (172)
T ss_dssp ----------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHH
T ss_pred ----------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHH
Confidence 01568999999999999999999999999999999874 2367999999999999999999
Q ss_pred hCCCccCCCCCCcEEEEEe
Q 023320 259 LQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 259 lng~~~~~~~~~~l~v~~a 277 (284)
|||..|+|+ .|+|+||
T Consensus 156 l~g~~~~g~---~l~V~~A 171 (172)
T 2g4b_A 156 LNGMQLGDK---KLLVQRA 171 (172)
T ss_dssp HTTCEETTE---ECEEEEC
T ss_pred cCCCEECCe---EEEEEeC
Confidence 999999988 9999997
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.8e-33 Score=220.41 Aligned_cols=159 Identities=12% Similarity=0.216 Sum_probs=135.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
++++|||+|||.++|+++|+++|+.||.|.+|++..+...+ .+||||+|.+.++|.+|++. +..+. |+.|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~---g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILD---GKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEET---TEECCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccC---CeEcccc
Confidence 57899999999999999999999999999999988542211 22999999999999999984 56777 8888877
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
++..... .
T Consensus 77 ~~~~~~~-------------------~----------------------------------------------------- 84 (167)
T 2cjk_A 77 RAIPRDE-------------------Q----------------------------------------------------- 84 (167)
T ss_dssp ECCCHHH-------------------H-----------------------------------------------------
T ss_pred cccchhh-------------------c-----------------------------------------------------
Confidence 6543210 0
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+.++|||+|||.++|+++|+++|+.||.|.++++.. +.++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 85 -------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 85 -------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp -------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred -------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 0156899999999999999999999999999999876 3456799999999999999998 899999988
Q ss_pred CCCcEEEEEeecc
Q 023320 268 DRGGMHIEYARSK 280 (284)
Q Consensus 268 ~~~~l~v~~ak~~ 280 (284)
.|+|.||+.|
T Consensus 157 ---~i~V~~a~pk 166 (167)
T 2cjk_A 157 ---KIEIKRAEPR 166 (167)
T ss_dssp ---CEEEEECCCC
T ss_pred ---EEEEeecCCC
Confidence 9999999876
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.2e-31 Score=229.14 Aligned_cols=166 Identities=19% Similarity=0.255 Sum_probs=143.8
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
+.++|||+|||.++|+++|+++|+.||.|..+++..+...+ .+||||+|.+.++|.+|++.|+|..+. |+.|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~i~v~ 170 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG---PRTLYVH 170 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 46899999999999999999999999999999988654333 239999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
++.......
T Consensus 171 ~a~~~~~~~----------------------------------------------------------------------- 179 (284)
T 3smz_A 171 WTDAGQLTP----------------------------------------------------------------------- 179 (284)
T ss_dssp ECCGGGCCT-----------------------------------------------------------------------
T ss_pred ECCCCCCCc-----------------------------------------------------------------------
Confidence 985532110
Q ss_pred CCCCCCCCCcCeEEEeCCCCCC-CHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNC-TEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~-t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
...+.++|||+|||.++ |+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|+|+
T Consensus 180 -----~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 254 (284)
T 3smz_A 180 -----ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 254 (284)
T ss_dssp -----TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred -----ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Confidence 00137789999999995 99999999999999999998773 3467999999999999999999999999977
Q ss_pred CCCcEEEEEeeccc
Q 023320 268 DRGGMHIEYARSKM 281 (284)
Q Consensus 268 ~~~~l~v~~ak~~~ 281 (284)
.|+|+|++.+.
T Consensus 255 ---~l~v~~a~~~~ 265 (284)
T 3smz_A 255 ---HLRVSFCAPGP 265 (284)
T ss_dssp ---ECEEEECCSSS
T ss_pred ---EEEEEEecCCC
Confidence 99999998664
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.4e-31 Score=228.03 Aligned_cols=168 Identities=20% Similarity=0.278 Sum_probs=140.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeeCCC-CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKYTGRG-NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~~~~~~~~-~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..++|||+|||..+|+++|+++|+.|| .|..|++..+..+ ..+||||+|.+.++|.+|+..|+|..+. |+.|.|.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 192 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIE---GYTLVTK 192 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEEE
Confidence 578999999999999999999999999 9999988743211 1229999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
++.......+.
T Consensus 193 ~a~~~~~~~~~--------------------------------------------------------------------- 203 (292)
T 2ghp_A 193 VSNPLEKSKRT--------------------------------------------------------------------- 203 (292)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred ECCCCcccccc---------------------------------------------------------------------
Confidence 98644221100
Q ss_pred CCCCCCCCCcCeEEEeCCCCC-CCHHHHHHHhccCCCceEEEEEee-----CCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 192 KPYEGGVQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.....+.++|||+|||.+ +|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|+ .|||..|.
T Consensus 204 ---~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~ 279 (292)
T 2ghp_A 204 ---DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG 279 (292)
T ss_dssp ------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEET
T ss_pred ---cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC
Confidence 000124789999999999 999999999999999999998763 34689999999999999999 99999999
Q ss_pred CCCCCcEEEEEeecc
Q 023320 266 SSDRGGMHIEYARSK 280 (284)
Q Consensus 266 ~~~~~~l~v~~ak~~ 280 (284)
|+ .|+|+||+.|
T Consensus 280 g~---~i~V~~a~~k 291 (292)
T 2ghp_A 280 NR---EISVSLADKK 291 (292)
T ss_dssp TE---EEEEEECCCC
T ss_pred Cc---EEEEEEecCC
Confidence 87 9999999876
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=7.9e-31 Score=221.32 Aligned_cols=157 Identities=22% Similarity=0.273 Sum_probs=137.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|.+. .+++ ||||+|.+.++|.+|+..++|..+. |+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~kg---~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN-RDRG---FGFIRLESRTLAEIAKAELDGTILK---SRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCc---EEEEEECCHHHHHHHHHHcCCcEEC---CceeEee
Confidence 4567899999999999999999999999999999887 5566 9999999999999999999999998 9999999
Q ss_pred EeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCC
Q 023320 112 LARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSE 191 (284)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (284)
++..
T Consensus 92 ~a~~---------------------------------------------------------------------------- 95 (261)
T 3sde_A 92 FATH---------------------------------------------------------------------------- 95 (261)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred eccc----------------------------------------------------------------------------
Confidence 8631
Q ss_pred CCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhC-CCccCCC
Q 023320 192 KPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQ-DSTLPSS 267 (284)
Q Consensus 192 ~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~ln-g~~~~~~ 267 (284)
.++|||+|||..+|+++|+++|+.||.|.+|.+..+ .+++||||+|.+.++|.+|++.|| |..+.+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~ 166 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTT 166 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecC
Confidence 347999999999999999999999999999998874 346799999999999999999995 5454422
Q ss_pred CCCcEEEEEeecc
Q 023320 268 DRGGMHIEYARSK 280 (284)
Q Consensus 268 ~~~~l~v~~ak~~ 280 (284)
.+.+|.|.+++..
T Consensus 167 ~~r~i~v~~~~~~ 179 (261)
T 3sde_A 167 TPRPVIVEPMEQF 179 (261)
T ss_dssp SCCBCEEEECCCE
T ss_pred CCceEEEeecccc
Confidence 2339999998754
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.7e-31 Score=224.93 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=136.5
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++++|||+|||.++|+++|+++|+.||.|..|++..+..+..+||||+|.+.++|.+|++ ++|..+. |+.|.|
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~---g~~i~v 112 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVG---QNEIIV 112 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEET---TEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeC---CcEEEE
Confidence 356689999999999999999999999999999999986544445599999999999999995 9999998 999999
Q ss_pred EEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCC
Q 023320 111 ELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINS 190 (284)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (284)
.++
T Consensus 113 ~~~----------------------------------------------------------------------------- 115 (292)
T 2ghp_A 113 SHL----------------------------------------------------------------------------- 115 (292)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred EEC-----------------------------------------------------------------------------
Confidence 863
Q ss_pred CCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 191 EKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 191 ~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
..++|||+|||..+|+++|+++|+.|| .|..|.+.. +.+++||||+|.+.++|.+|++.|||..|.|
T Consensus 116 ---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 186 (292)
T 2ghp_A 116 ---------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 186 (292)
T ss_dssp ---------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred ---------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 056899999999999999999999999 999999876 3467899999999999999999999999997
Q ss_pred CCCCcEEEEEeeccc
Q 023320 267 SDRGGMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~ 281 (284)
+ .|+|.|+..+.
T Consensus 187 ~---~l~v~~a~~~~ 198 (292)
T 2ghp_A 187 Y---TLVTKVSNPLE 198 (292)
T ss_dssp E---ECEEEECCCC-
T ss_pred c---EEEEEECCCCc
Confidence 7 99999987553
No 20
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.1e-30 Score=220.25 Aligned_cols=152 Identities=20% Similarity=0.383 Sum_probs=137.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
++++|||+|||.++|+++|+++|+.|| |..|.+. ..++ ||||+|.+.++|.+|++.|+|..+. |+.|.|+++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~-~~~g---~afV~f~~~~~A~~A~~~l~~~~~~---g~~i~v~~~ 92 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD-KYKG---TAFVTLLNGEQAEAAINAFHQSRLR---ERELSVQLQ 92 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHTTCEET---TEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEe-cCCC---EEEEEeCCHHHHHHHHHHcCCCeeC---CeEEEEEec
Confidence 578999999999999999999999999 8888884 5566 9999999999999999999999998 999999862
Q ss_pred ecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q 023320 114 RSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDTDEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKP 193 (284)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (284)
.
T Consensus 93 ~------------------------------------------------------------------------------- 93 (284)
T 3smz_A 93 P------------------------------------------------------------------------------- 93 (284)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 194 YEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 194 ~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
+.++|||+|||.++|+++|+++|+.||.|..+++..+ .+++||||+|.+.++|.+|++.|||..+.|+
T Consensus 94 ------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-- 165 (284)
T 3smz_A 94 ------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPR-- 165 (284)
T ss_dssp ------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE--
T ss_pred ------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc--
Confidence 1458999999999999999999999999999998763 3467999999999999999999999999977
Q ss_pred CcEEEEEeeccc
Q 023320 270 GGMHIEYARSKM 281 (284)
Q Consensus 270 ~~l~v~~ak~~~ 281 (284)
.|+|.|+..+.
T Consensus 166 -~i~v~~a~~~~ 176 (284)
T 3smz_A 166 -TLYVHWTDAGQ 176 (284)
T ss_dssp -ECEEEECCGGG
T ss_pred -EEEEEECCCCC
Confidence 99999997654
No 21
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=6.2e-24 Score=164.17 Aligned_cols=137 Identities=18% Similarity=0.220 Sum_probs=109.1
Q ss_pred eeEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCeEEEEEeecCCCCCcCCCCCceeeecccccchhccccCCCCCCCCCC
Q 023320 75 QVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHIELARSNSRKKRKPGSGAYVVIDKRTKTEANVQESSSADGDSDT 153 (284)
Q Consensus 75 ~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (284)
+++++|+|.+.++|++|++.+ ||..+. | .+.+.++......... . ...
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~---G-~~~~~~a~~~~~~~~~-----------~-----------~~~----- 61 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVD---G-EWTYDDATKTFTVTEG-----------S-----------HHH----- 61 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCC---C-EEEEETTTTEEEEECS-----------S-----------SSC-----
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCC---C-ceecccccCccccccc-----------c-----------ccc-----
Confidence 349999999999999999999 999998 8 8888866433221100 0 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCcCcccCCCCCCCCCCCCCCCCCCCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEE
Q 023320 154 DEASPVRNIDSADKGDFVTTQSERATDSGNAVAPINSEKPYEGGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKM 233 (284)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~ 233 (284)
..........+.++|||+|||+++|+++|+++|++||.|.+|++
T Consensus 62 ------------------------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i 105 (150)
T 2i2y_A 62 ------------------------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWV 105 (150)
T ss_dssp ------------------------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEE
T ss_pred ------------------------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEE
Confidence 00001111234789999999999999999999999999999999
Q ss_pred EeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecccc
Q 023320 234 RARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKMR 282 (284)
Q Consensus 234 ~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~~ 282 (284)
..+ +++||||+|.+.++|.+|++.|||..|.|+ .|+|+|++.+.+
T Consensus 106 ~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~~~~r 150 (150)
T 2i2y_A 106 ARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGC---RVRVELSNGEKR 150 (150)
T ss_dssp CSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSS---CCEEEECCCCCC
T ss_pred eeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEcCCCCC
Confidence 876 578999999999999999999999999988 999999998754
No 22
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=2.6e-23 Score=162.02 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=73.1
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||.++|+++|+++|+.||.|.+|++.. +.+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~ 145 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR---ELRVQ 145 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS---EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe---EEEEE
Confidence 478999999999999999999999999999999876 34678999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
||+.+.
T Consensus 146 ~a~~~~ 151 (158)
T 2kn4_A 146 MARYGR 151 (158)
T ss_dssp EECCSS
T ss_pred ECCCCC
Confidence 998764
No 23
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=8.7e-24 Score=155.84 Aligned_cols=79 Identities=15% Similarity=0.335 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
+.+|||+|||+++|+++|+++|++||.|.+|+|..+..+.++||||+|.+.++|++|++.|+|..+. |+.|+|.+++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~---g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN---DRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEEECC
Confidence 5689999999999999999999999999999998665444459999999999999999999999998 9999999986
Q ss_pred cC
Q 023320 115 SN 116 (284)
Q Consensus 115 ~~ 116 (284)
.+
T Consensus 82 ~~ 83 (115)
T 4f25_A 82 SR 83 (115)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=140.44 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=71.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+++|||+|||.++|+++|+++|++||.|.+|++.. +.+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr---~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK---TIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 378999999999999999999999999999999887 34567999999999999999999999999988 99999
Q ss_pred Eeec
Q 023320 276 YARS 279 (284)
Q Consensus 276 ~ak~ 279 (284)
|||.
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9974
No 25
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=1.7e-21 Score=138.10 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=73.1
Q ss_pred CCCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc--cCCCCCCcEE
Q 023320 196 GGVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMH 273 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~--~~~~~~~~l~ 273 (284)
...+|+++|||+|||.++|+++|+++|++||.|.+|++++. |+||||+|.+.++|.+|++.|||.. |.|+ +|+
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i~ 90 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIAGH---PAF 90 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEETTE---EEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeCCc---EEE
Confidence 34467999999999999999999999999999999998864 5899999999999999999999987 7777 999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|+||+.+.
T Consensus 91 V~~S~~k~ 98 (100)
T 3r27_A 91 VNYSTSQK 98 (100)
T ss_dssp EEECSCSC
T ss_pred EEeccccc
Confidence 99998764
No 26
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=132.82 Aligned_cols=79 Identities=22% Similarity=0.371 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.+.+|||+|||.++|+++|+++|++||.|..|++..+...+. +||||+|.+.++|.+|++.|||..+. |+.|+|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---gr~l~V~ 94 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ---SKTIKVS 94 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC---CEEEEEE
Confidence 457899999999999999999999999999999986544333 29999999999999999999999998 9999999
Q ss_pred Eeec
Q 023320 112 LARS 115 (284)
Q Consensus 112 ~a~~ 115 (284)
|+++
T Consensus 95 ~AkP 98 (99)
T 4fxv_A 95 YARP 98 (99)
T ss_dssp ECCB
T ss_pred EeeC
Confidence 9964
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=137.67 Aligned_cols=79 Identities=18% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
++.++|||+||++++|+++|+++|++||.|.+|+++. +.+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr---~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN---IIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe---EEEE
Confidence 4688999999999999999999999999999999886 34578999999999999999999999999988 9999
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
++|+.+
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 999754
No 28
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.83 E-value=1.9e-20 Score=132.75 Aligned_cols=80 Identities=13% Similarity=0.188 Sum_probs=72.1
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCe--eCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVK--FDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~--~~~~~g~~ 107 (284)
...+|+++|||+|||+++|+++|+++|++||.|.+|++. ..|+ ||||+|.+.++|..|++.|+|.. +. |++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~-~~kg---~AFVef~~~~~A~~Av~~ln~~~~~i~---Gr~ 88 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM-PKKR---QALVEFEDVLGACNAVNYAADNQIYIA---GHP 88 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCEEET---TEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHhcCCCceeC---CcE
Confidence 346689999999999999999999999999999999887 5566 99999999999999999999875 66 999
Q ss_pred EEEEEeecC
Q 023320 108 LHIELARSN 116 (284)
Q Consensus 108 l~v~~a~~~ 116 (284)
|+|+|++.+
T Consensus 89 i~V~~S~~k 97 (100)
T 3r27_A 89 AFVNYSTSQ 97 (100)
T ss_dssp EEEEECSCS
T ss_pred EEEEecccc
Confidence 999999765
No 29
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.2e-20 Score=139.00 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=71.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC--CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG--GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~--~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.++|||+|||+++|+++|+++|++||.|.+|++..+. +++||||+|.+.++|++||+.|||..|.|+ .|+|++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR---KVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE---EEEEEECC
Confidence 5689999999999999999999999999999988743 467999999999999999999999999988 99999997
Q ss_pred ccc
Q 023320 279 SKM 281 (284)
Q Consensus 279 ~~~ 281 (284)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 30
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=136.39 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=73.4
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCC--CccCCCCCCcEEE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD--STLPSSDRGGMHI 274 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng--~~~~~~~~~~l~v 274 (284)
..+++++|||+|||+++|+++|+++|++||.|.+|+++.+ ++||||+|++.++|.+|++.|++ ..|.|+ +|+|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l~V 101 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYI 101 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB---CCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCe---EEEE
Confidence 3456899999999999999999999999999999999876 58999999999999999999984 689988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+.-
T Consensus 102 ~~a~~k~~ 109 (119)
T 2ad9_A 102 QFSNHKEL 109 (119)
T ss_dssp EECSSSSC
T ss_pred EEccCCCC
Confidence 99987654
No 31
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.2e-20 Score=132.27 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=73.2
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh--CCCccCCCCCCcEEE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL--QDSTLPSSDRGGMHI 274 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l--ng~~~~~~~~~~l~v 274 (284)
..+++++|||+|||.++|+++|+++|++||.|.+|.+..+ ++||||+|.+.++|.+|++.| ++..|.|+ +|+|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQ---PIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTE---ECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCc---EEEE
Confidence 3456899999999999999999999999999999988865 589999999999999999987 56789988 9999
Q ss_pred EEeeccccC
Q 023320 275 EYARSKMRK 283 (284)
Q Consensus 275 ~~ak~~~~~ 283 (284)
+||+.+.-+
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999876543
No 32
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=133.38 Aligned_cols=80 Identities=18% Similarity=0.242 Sum_probs=72.1
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc--cCCCCCCcEEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMHIE 275 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~--~~~~~~~~l~v~ 275 (284)
.+++++|||+|||.++++++|+++|++||.|.+|.+..+ ++||||+|.+.++|.+|++.|||.. |.|+ +|+|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~V~ 86 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQ---QAFFN 86 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS---BCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCE---EEEEE
Confidence 456899999999999999999999999999999998864 5899999999999999999997654 8877 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
|++.+..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9987654
No 33
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=8.2e-21 Score=136.00 Aligned_cols=79 Identities=19% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCC--CccCCCCCCcEEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD--STLPSSDRGGMHIEY 276 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng--~~~~~~~~~~l~v~~ 276 (284)
.+.++|||+|||+++|+++|+++|++||.|.+|+++.+ ++||||+|.+.++|.+|++.|++ ..|.|+ +|+|+|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTE---ECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCE---EEEEEE
Confidence 35889999999999999999999999999999999875 59999999999999999999864 789988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
|+.+..
T Consensus 89 A~~~~~ 94 (105)
T 1sjq_A 89 SNHKEL 94 (105)
T ss_dssp CSSSSC
T ss_pred cCCCCC
Confidence 987653
No 34
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=6.3e-21 Score=135.07 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=68.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCC--ceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCc----cCCCCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPG--FNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDST----LPSSDRG 270 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~--v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~----~~~~~~~ 270 (284)
-.||||+|||+++|+++|+++|++||. +.+|++.+ +.++|||||+|.+.++|++|++.|||.. |+||
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr--- 85 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK--- 85 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE---
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE---
Confidence 578999999999999999999999995 66888766 4567899999999999999999999984 8877
Q ss_pred cEEEEEeec
Q 023320 271 GMHIEYARS 279 (284)
Q Consensus 271 ~l~v~~ak~ 279 (284)
+|.|+|||+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999986
No 35
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=136.19 Aligned_cols=82 Identities=22% Similarity=0.341 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+..+.++||||+|.+.++|++|++.|+|..+. |+.|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEEEE
Confidence 6667999999999999999999999999999999998553222339999999999999999999999998 9999999
Q ss_pred EeecC
Q 023320 112 LARSN 116 (284)
Q Consensus 112 ~a~~~ 116 (284)
+++.+
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98765
No 36
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=134.24 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=71.0
Q ss_pred CCcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc--cCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST--LPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~--~~~~~~~~l~v~ 275 (284)
.++++|||+|||+ ++|+++|+++|++||.|.+|+++.++ +||||+|.+.++|.+|++.|||.. |.|+ +|+|+
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGK---PVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTE---ECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCc---EEEEE
Confidence 4689999999999 99999999999999999999998754 899999999999999999998754 8877 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
||+.+.
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998643
No 37
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.7e-20 Score=127.42 Aligned_cols=73 Identities=16% Similarity=0.162 Sum_probs=69.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
+..|||+||+..+|+++|+++|++||.|.++++.. ++|||||+|.+.++|.+|+++|||.++.++ +|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANT---TIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECC
Confidence 67899999999999999999999999999999876 569999999999999999999999999988 99999985
No 38
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=133.33 Aligned_cols=80 Identities=10% Similarity=0.121 Sum_probs=71.6
Q ss_pred CCCcCeEEEeCCCCC-CCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCC--CccCCCCCCcEEE
Q 023320 198 VQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD--STLPSSDRGGMHI 274 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng--~~~~~~~~~~l~v 274 (284)
..++++|||+|||++ +|+++|+++|++||.|.+|++.+ +++||||+|.+.++|.+|++.||+ ..|.|+ +|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGR---CVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSS---CCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCE---EEEE
Confidence 456899999999998 99999999999999999999975 458999999999999999999864 568888 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+..
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99986543
No 39
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=4.9e-21 Score=134.94 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=70.7
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHh-CCCccCCCCCCcEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHI 274 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~l-ng~~~~~~~~~~l~v 274 (284)
+++|||+|||.++|+++|+++|++|| .|.+|+++. +.++|||||+|.+.++|.+|++.| |+..|.|+ .|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ---KVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE---EEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE---EEEE
Confidence 46899999999999999999999999 899999876 456789999999999999999988 46679977 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+.+
T Consensus 78 ~~a~~~~~ 85 (91)
T 2lxi_A 78 HYSDPKPK 85 (91)
T ss_dssp ECCCSCCC
T ss_pred EEcCCCCC
Confidence 99987654
No 40
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=1.3e-19 Score=131.09 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=74.4
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
..+.++|||+|||..+|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..+.+..++.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 345899999999999999999999999999999999874 33679999999999999999999999999611139999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 41
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=128.93 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
+++++|||+|||.++|+++|+++|++||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR---PMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS---CCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc---EEEE
Confidence 35789999999999999999999999999999999873 4567999999999999999999999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99988754
No 42
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1e-19 Score=129.74 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=74.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
...++|||+|||..+|+++|+++|+.||.|. ++++.+.+++||||+|.+.++|++|++.|||..|.|+ .|+|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS---CCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEcC
Confidence 3478999999999999999999999999997 7777788889999999999999999999999999988 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 93 ~~~~ 96 (97)
T 2e5j_A 93 QQRD 96 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 43
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=129.18 Aligned_cols=80 Identities=18% Similarity=0.381 Sum_probs=73.9
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC--CCCCCcEEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP--SSDRGGMHIE 275 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~--~~~~~~l~v~ 275 (284)
.++.++|||+|||.++|+++|+++|++||.|.+|++..+ ++||||+|.+.++|++|++.|||..|. ++ .|+|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDR---RLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC---BCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc---EEEEE
Confidence 345789999999999999999999999999999998866 589999999999999999999999999 77 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
|++.+.+
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998754
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.6e-19 Score=129.53 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=74.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~ 91 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN---IIKVA 91 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC---EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 45789999999999999999999999999999999873 3457999999999999999999999999988 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
|++.+.+
T Consensus 92 ~a~~~~~ 98 (100)
T 2do4_A 92 ISNSGPS 98 (100)
T ss_dssp ECCCCSC
T ss_pred ECCCCCC
Confidence 9998765
No 45
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=5.9e-20 Score=133.59 Aligned_cols=89 Identities=22% Similarity=0.362 Sum_probs=72.8
Q ss_pred CCCCCCCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee
Q 023320 21 VPPPPYHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 21 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
...|+........++++|||+|||.++|+++|+++|++||.|..|++. ++ ||||+|.+.++|++|++.|+|..+
T Consensus 17 ~~~p~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg---~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 17 RGSHMHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NG---FAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp -----------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TT---EEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCcccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHcCCCEE
Confidence 333344445557778999999999999999999999999999999988 77 999999999999999999999999
Q ss_pred CCCCCCeEEEEEeecCCC
Q 023320 101 DPQSGSVLHIELARSNSR 118 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~~~~ 118 (284)
. |+.|+|.|++....
T Consensus 91 ~---g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 91 A---NQPLEVVYSKLPAK 105 (108)
T ss_dssp T---TEECEEESCSCCC-
T ss_pred C---CeEEEEEEecCCCC
Confidence 8 99999999876643
No 46
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=136.64 Aligned_cols=81 Identities=16% Similarity=0.269 Sum_probs=73.4
Q ss_pred CCCcCeEEEeCCCCCCCHHHHH----HHhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 198 VQPCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
.+++++|||+|||+.+++++|+ ++|++||.|.+|.+.. +.++|||||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr---~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN---PL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS---CC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC---EE
Confidence 3468899999999999999876 6999999999998865 56789999999999999999999999999988 99
Q ss_pred EEEEeeccc
Q 023320 273 HIEYARSKM 281 (284)
Q Consensus 273 ~v~~ak~~~ 281 (284)
+|+||+.+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998764
No 47
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-19 Score=130.61 Aligned_cols=81 Identities=16% Similarity=0.280 Sum_probs=74.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 89 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK---PLYVAL 89 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS---BCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc---EEEEEE
Confidence 35889999999999999999999999999999999875 4567999999999999999999999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2d9p_A 90 AQRKEE 95 (103)
T ss_dssp CSSCCC
T ss_pred eccccc
Confidence 987654
No 48
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.4e-20 Score=131.23 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCC--eeCCCCCCeE
Q 023320 32 DNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGV--KFDPQSGSVL 108 (284)
Q Consensus 32 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~--~~~~~~g~~l 108 (284)
.+++++|||+|||+ ++|+++|+++|++||.|.+|.+. .+++ ||||+|.+.++|..|++.|++. .+. |++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL-NKIN---EAFIEMATTEDAQAAVDYYTTTPALVF---GKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC-SSSS---CEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHHcCCCceEC---CcEE
Confidence 55789999999999 99999999999999999999887 4556 9999999999999999998864 487 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|+|++.....
T Consensus 85 ~V~~a~~~~~~ 95 (102)
T 1x4d_A 85 RVHLSQKYKRI 95 (102)
T ss_dssp EEEEECCCTTS
T ss_pred EEEECCCCCCC
Confidence 99999866443
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-20 Score=132.01 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC--CCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN--GVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g~~l 108 (284)
+.+++++|||+|||+++|+++|+++|++||.|.+|++. .+|+ ||||+|.+.++|.+|++.++ +..+. |++|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG---faFVeF~~~~~A~~Ai~~l~~~~~~l~---Gr~l 84 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKN---QAFIEMNTEEAANTMVNYYTSVTPVLR---GQPI 84 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHTTSCCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-cCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEEE
Confidence 34568999999999999999999999999999999988 4466 99999999999999999886 47888 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|+|++.+...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999766443
No 50
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=5.7e-20 Score=128.33 Aligned_cols=78 Identities=14% Similarity=0.219 Sum_probs=70.6
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||.++|+++|+++|++||.|.+|.+..+ .+++||||+|.+.++|.+|++.|||..+.|+ .|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 81 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---QIRTN 81 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 4789999999999999999999999999999999874 3467999999999999999999999999987 99999
Q ss_pred Eeecc
Q 023320 276 YARSK 280 (284)
Q Consensus 276 ~ak~~ 280 (284)
||+.+
T Consensus 82 ~a~~k 86 (87)
T 3bs9_A 82 WATRK 86 (87)
T ss_dssp EEC--
T ss_pred ecCCC
Confidence 99876
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=131.19 Aligned_cols=81 Identities=22% Similarity=0.453 Sum_probs=74.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++.. +.+++||||+|.+.++|++|++.|||..|.++ .|+|+|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY---RLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE---ECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEc
Confidence 3578999999999999999999999999999999877 44578999999999999999999999999977 9999999
Q ss_pred ecccc
Q 023320 278 RSKMR 282 (284)
Q Consensus 278 k~~~~ 282 (284)
+.+.+
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 87654
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.2e-19 Score=129.52 Aligned_cols=81 Identities=16% Similarity=0.265 Sum_probs=74.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 89 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR---KIEVNN 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE---EEEEEE
Confidence 45899999999999999999999999999999999874 3468999999999999999999999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2cq3_A 90 ATARVM 95 (103)
T ss_dssp CCSSCC
T ss_pred cccCCC
Confidence 987754
No 53
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=128.43 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=71.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
++.++|||+|||.++++++|+++|++||.|..|.+.. +.+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v 90 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR---VIKA 90 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE---EEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc---EEEE
Confidence 4588999999999999999999999999999999977 34568999999999999999999999999988 9999
Q ss_pred EEee
Q 023320 275 EYAR 278 (284)
Q Consensus 275 ~~ak 278 (284)
+|||
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9986
No 54
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=126.89 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=72.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGV---NINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCc---EEEEEECC
Confidence 358899999999999999999999999999999988 47999999999999999999999999988 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 79 ~~~~ 82 (90)
T 2dnq_A 79 NKSK 82 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7754
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=6.3e-20 Score=127.55 Aligned_cols=77 Identities=17% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++++++|+++|++||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 81 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---TIRV 81 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 35899999999999999999999999999999998663 3467999999999999999999999999987 9999
Q ss_pred EEee
Q 023320 275 EYAR 278 (284)
Q Consensus 275 ~~ak 278 (284)
+|||
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9986
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=7.7e-20 Score=130.16 Aligned_cols=80 Identities=20% Similarity=0.248 Sum_probs=73.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
|+++|||+|||.++++++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR---FLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEE
Confidence 4789999999999999999999999999999998763 3478999999999999999999999999987 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
||+.+..
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9987653
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=129.69 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=74.6
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR---QIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC---CCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe---EEE
Confidence 345889999999999999999999999999999999773 3567999999999999999999999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 86 v~~a~~~~~ 94 (102)
T 1x5s_A 86 VDQAGKSSD 94 (102)
T ss_dssp EEEEECCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 58
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=2.1e-19 Score=132.92 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=71.8
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
...+.++|||+|||.++|+++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|+|+ .|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK---RL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE---EC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 3455899999999999999999999999999999999763 4578999999999999999999999999988 99
Q ss_pred EEEEee
Q 023320 273 HIEYAR 278 (284)
Q Consensus 273 ~v~~ak 278 (284)
+|+|+|
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 59
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.81 E-value=1.4e-19 Score=129.00 Aligned_cols=79 Identities=22% Similarity=0.280 Sum_probs=71.5
Q ss_pred CCCCCCCCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 29 QQQDNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....+++++|||+|||. ++++++|+++|+.||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~ 86 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NA---FGFIQFDNPQSVRDAIEXESQEMNF---GKK 86 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SS---EEEEEESSHHHHHHHHHHHTTSEET---TEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 34456789999999998 99999999999999999999886 77 9999999999999999999999998 999
Q ss_pred EEEEEeecC
Q 023320 108 LHIELARSN 116 (284)
Q Consensus 108 l~v~~a~~~ 116 (284)
|+|++++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998765
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=9.3e-19 Score=133.19 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=78.4
Q ss_pred CCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 27 HHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 27 ~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
...+...+.++|||+|||.++|+++|+++|+.||.|..|++..+..++ ++||||+|.+.++|.+|++.|+|..+.
T Consensus 34 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--- 110 (139)
T 1u6f_A 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL--- 110 (139)
T ss_dssp CSSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS---
T ss_pred ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 344557778999999999999999999999999999999998664433 239999999999999999999999998
Q ss_pred CCeEEEEEeecCCCC
Q 023320 105 GSVLHIELARSNSRK 119 (284)
Q Consensus 105 g~~l~v~~a~~~~~~ 119 (284)
|+.|+|.+++.....
T Consensus 111 g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 111 NKRLKVALAASGHQR 125 (139)
T ss_dssp SCEEEEEESSCCCCC
T ss_pred CeEEEEEECCCCCCC
Confidence 999999999876543
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=127.64 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=72.5
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh--CCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL--NGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l--~g~~~~~~~g~~l 108 (284)
..+++++|||+|||+++|+++|+++|++||.|..|.+. .+++ ||||+|.+.++|.+|++.| ++..+. |+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~~~---Gr~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML-KGKN---QAFLELATEEAAITMVNYYSAVTPHLR---NQPI 83 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCCEET---TEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CcEE
Confidence 35678999999999999999999999999999999877 4466 9999999999999999976 577888 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|+|++.+...
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999876544
No 62
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.06 Aligned_cols=81 Identities=21% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+.++|||+|||..+|+++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~ 89 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK---EVKVNW 89 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE---EEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC---eEEEEE
Confidence 45899999999999999999999999999999999873 3568999999999999999999999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987653
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1.7e-19 Score=132.72 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=74.2
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
.++.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 98 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK---RLK 98 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE---EEE
Confidence 345789999999999999999999999999999998873 3456999999999999999999999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999987654
No 64
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.8e-20 Score=140.07 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=72.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||.++|+++|+++|+.||.|..|++.. +.+++||||+|.+.++|++|++.|||..|.++ .|+|+
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~---~l~V~ 122 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR---ELRVQ 122 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS---CCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 378999999999999999999999999999999875 35578999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 123 ~a~~~~ 128 (135)
T 2lea_A 123 MARYGR 128 (135)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 998654
No 65
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=129.30 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 82 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR---MLHV 82 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC---EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc---EEEE
Confidence 35789999999999999999999999999999998763 3568999999999999999999999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99987754
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=127.10 Aligned_cols=88 Identities=20% Similarity=0.318 Sum_probs=77.2
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....+.++|||+|||.++|+++|+++|++||.|..|++..+..+.+.||||+|.+.++|++|++.|+|..|. |+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE---GRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 335667999999999999999999999999999999998654333449999999999999999999999998 99999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|.+++......
T Consensus 87 v~~a~~~~~~~ 97 (103)
T 2cq3_A 87 VNNATARVMTN 97 (103)
T ss_dssp EEECCSSCCCC
T ss_pred EEEcccCCCCC
Confidence 99998775543
No 67
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=130.12 Aligned_cols=82 Identities=15% Similarity=0.138 Sum_probs=74.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|++||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 89 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK---PIRV 89 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC---BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe---EEEE
Confidence 45889999999999999999999999999999998773 3567999999999999999999999999988 9999
Q ss_pred EEeeccccC
Q 023320 275 EYARSKMRK 283 (284)
Q Consensus 275 ~~ak~~~~~ 283 (284)
+|++.+.+.
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999877553
No 68
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.81 E-value=1.1e-19 Score=125.76 Aligned_cols=77 Identities=19% Similarity=0.349 Sum_probs=71.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.+|||+|||.++|+++|+++|+.||.|.++.+..+ .+++||||+|.+.++|.+|++.|||..+.|+ .|+|+||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a 78 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR---PLRINWA 78 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc---EEEEEec
Confidence 58999999999999999999999999999998864 3367999999999999999999999999987 9999999
Q ss_pred eccc
Q 023320 278 RSKM 281 (284)
Q Consensus 278 k~~~ 281 (284)
+.+.
T Consensus 79 ~~~~ 82 (83)
T 3md1_A 79 AKLE 82 (83)
T ss_dssp CCCC
T ss_pred CcCC
Confidence 8764
No 69
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.1e-20 Score=129.80 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=73.5
Q ss_pred CcCeEEEeCCCCCCCHHHHH----HHhccCCCceEEEEEee-CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRAR-GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~~-~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
..++|||+|||.++++++|+ ++|++||.|.+|++..+ .+++||||+|.+.++|++|++.|||..|.|+ .|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr---~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSK---KILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTE---EEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCe---EEEE
Confidence 47899999999999999999 99999999999999863 2278999999999999999999999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+..
T Consensus 85 ~~a~~~~~ 92 (96)
T 2dgx_A 85 SLATGASG 92 (96)
T ss_dssp EECCCSSC
T ss_pred EEcCCCCC
Confidence 99987754
No 70
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=127.52 Aligned_cols=80 Identities=15% Similarity=0.281 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|+.||.|..|++.. +.+++||||+|.+.++|.+|++ |||..|.++ .|+|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---~l~V 83 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK---KVEV 83 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC---BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe---EEEE
Confidence 4588999999999999999999999999999999976 3457899999999999999999 999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987654
No 71
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=130.50 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+.++|||+|||+++|+++|+++|++||.|.+|+|..+..+++ +||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~---gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM---GNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 4578999999999999999999999999999999987654333 39999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
+++...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 998544
No 72
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=130.78 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=74.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|.+.. +.+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGR---ELRV 87 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTB---CCEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCc---EEEE
Confidence 4588999999999999999999999999999999876 34568999999999999999999999999987 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dnm_A 88 QVARYGRR 95 (103)
T ss_dssp EECSSCCS
T ss_pred EECCcCCC
Confidence 99986643
No 73
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.8e-19 Score=127.72 Aligned_cols=86 Identities=29% Similarity=0.409 Sum_probs=76.1
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++..+..+.++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 87 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL---GKEVKV 87 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET---TEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC---CCeEEE
Confidence 35668999999999999999999999999999999998553333349999999999999999999999998 999999
Q ss_pred EEeecCCCC
Q 023320 111 ELARSNSRK 119 (284)
Q Consensus 111 ~~a~~~~~~ 119 (284)
+|++.....
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999876544
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=126.50 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=72.8
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
..++|||+|||.++|+++|+++|++||.|.++.+..+. +++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQ---EITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCe---EEEE
Confidence 36799999999999999999999999999999987643 678999999999999999999999999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
++++.+.
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9997654
No 75
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=129.03 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCC--eeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGV--KFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~--~~~~~~g~~l 108 (284)
..+++++|||+|||+++++++|+++|++||.|..|.+. .+|+ ||||+|.+.++|.+|++.|++. .+. |+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~i~---Gr~l 83 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM-PFKR---QALVEFENIDSAKECVTFAADVPVYIA---GQQA 83 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHHHSCCBSS---SSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEEE
Confidence 35678999999999999999999999999999999887 4566 9999999999999999988664 476 9999
Q ss_pred EEEEeecCCC
Q 023320 109 HIELARSNSR 118 (284)
Q Consensus 109 ~v~~a~~~~~ 118 (284)
+|+|++.+..
T Consensus 84 ~V~~a~~~~~ 93 (104)
T 1wex_A 84 FFNYSTSKRI 93 (104)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCccc
Confidence 9999976644
No 76
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=130.78 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=74.8
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|++.. +.+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---TIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc---EEE
Confidence 34589999999999999999999999999999999866 34578999999999999999999999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987754
No 77
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=130.18 Aligned_cols=82 Identities=17% Similarity=0.296 Sum_probs=74.5
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|++||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 88 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL---ILN 88 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE---ECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc---EEE
Confidence 345899999999999999999999999999999999874 3467999999999999999999999999987 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 78
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=2.2e-19 Score=128.02 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCCcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 198 VQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 198 ~~~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+++++|||+|||. ++++++|+++|+.||.|.+|++. ++||||+|.+.++|.+|++.|||..+.|+ .|+|+|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGK---KLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTE---ECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCE---EEEEEe
Confidence 34689999999998 99999999999999999999984 58999999999999999999999999977 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+.|
T Consensus 92 a~~~~r 97 (97)
T 2xnq_A 92 SSSNAR 97 (97)
T ss_dssp CCCCC-
T ss_pred cCCCCC
Confidence 998754
No 79
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=128.21 Aligned_cols=79 Identities=23% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||..+|+++|+++|++||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 88 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---RIR 88 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 345899999999999999999999999999999999863 4467999999999999999999999999988 999
Q ss_pred EEEeec
Q 023320 274 IEYARS 279 (284)
Q Consensus 274 v~~ak~ 279 (284)
|+||++
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999975
No 80
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.5e-19 Score=129.07 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=73.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee-------CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~ 271 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH---K 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE---E
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe---E
Confidence 35789999999999999999999999999999998863 3467999999999999999999999999987 9
Q ss_pred EEEEEeecccc
Q 023320 272 MHIEYARSKMR 282 (284)
Q Consensus 272 l~v~~ak~~~~ 282 (284)
|+|+|++.+..
T Consensus 80 l~V~~a~~~~~ 90 (98)
T 2cpf_A 80 LEVRISERATK 90 (98)
T ss_dssp CEEECSSCSSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 81
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.9e-19 Score=127.17 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=71.2
Q ss_pred CCCcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 198 VQPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 198 ~~~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.++.++|||+|||. .+|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|++.|||..+.|+ .|+|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGK---KLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTT---TBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCc---EEEEEE
Confidence 45689999999998 99999999999999999999985 57999999999999999999999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+.+
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987654
No 82
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.80 E-value=1.5e-19 Score=131.42 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=72.5
Q ss_pred CCCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 197 GVQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++. ++||||+|.+.++|.+|++.|||..|.|+ .|+|+|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQ---PLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTE---ECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 34558999999999999999999999999999999988 58999999999999999999999999977 999999
Q ss_pred eeccccC
Q 023320 277 ARSKMRK 283 (284)
Q Consensus 277 ak~~~~~ 283 (284)
++.+.++
T Consensus 100 a~~~~~r 106 (108)
T 2jvo_A 100 SKLPAKR 106 (108)
T ss_dssp CSCCC--
T ss_pred ecCCCCC
Confidence 9877654
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-18 Score=126.76 Aligned_cols=84 Identities=20% Similarity=0.317 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..++.++|||+|||..+|+++|+++|++||.|..|++..+..++. +||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l 98 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA---GRPM 98 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS---SSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 355679999999999999999999999999999999986644333 29999999999999999999999998 9999
Q ss_pred EEEEeecCC
Q 023320 109 HIELARSNS 117 (284)
Q Consensus 109 ~v~~a~~~~ 117 (284)
+|.+++.+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999997764
No 84
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=2.5e-19 Score=130.25 Aligned_cols=80 Identities=20% Similarity=0.262 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
++.++|||+|||..+|+++|+++|++||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~---~l~V 100 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR---PMKV 100 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS---CCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 45789999999999999999999999999999999874 3357999999999999999999999999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
+|++.+.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998763
No 85
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=127.10 Aligned_cols=77 Identities=14% Similarity=0.244 Sum_probs=71.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
++.++|||+|||.++|+++|+++|++||.|.. +++..+ .+++||||+|.+.++|.+|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45899999999999999999999999999999 888764 346799999999999999999999999998
Q ss_pred CCCCcEEEEEee
Q 023320 267 SDRGGMHIEYAR 278 (284)
Q Consensus 267 ~~~~~l~v~~ak 278 (284)
+ .|+|+||+
T Consensus 91 ~---~l~V~~A~ 99 (99)
T 2la6_A 91 N---PIKVSFAT 99 (99)
T ss_dssp S---BCEEEECC
T ss_pred c---EEEEEecC
Confidence 8 99999985
No 86
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.2e-19 Score=124.42 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=74.5
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
+...+.++|||+|||.++|+++|+++|++||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 75 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KD---YAFVHMERAEDAVEAIRGLDNTEFQ---GKRMH 75 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SS---EEEEEESCHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CC---EEEEEECCHHHHHHHHHHhCCCeeC---CcEEE
Confidence 345678999999999999999999999999999999998 77 9999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|++++.....
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999776543
No 87
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=127.62 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=73.7
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
..+.++|||+|||..+|+++|+++|++||.|..|++... ++||||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGK---QLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTB---CCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCc---eEEEEEc
Confidence 345889999999999999999999999999999998865 58999999999999999999999999977 9999999
Q ss_pred ecccc
Q 023320 278 RSKMR 282 (284)
Q Consensus 278 k~~~~ 282 (284)
+.+..
T Consensus 87 ~~~~~ 91 (99)
T 2cpj_A 87 CHSAS 91 (99)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 87654
No 88
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=129.27 Aligned_cols=80 Identities=25% Similarity=0.335 Sum_probs=73.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEE-EEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNML-KMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v-~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
++++|||+|||.++|+++|+++|+.||.|..+ ++.. +.+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v 80 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---PITV 80 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE---ECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 58899999999999999999999999999999 8876 34568999999999999999999999999987 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 81 ~~a~~~~~ 88 (96)
T 1x5t_A 81 SYAFKKDS 88 (96)
T ss_dssp EESCCCCC
T ss_pred EEecccCC
Confidence 99987654
No 89
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=123.64 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=66.8
Q ss_pred CCcCe-EEEeCCCCCCCHHH----HHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 199 QPCST-LFIANLGPNCTEDE----LKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 199 ~~~~~-L~v~nL~~~~t~~~----L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
+|+.| |||+|||.++++++ |+++|++|| .|.+|. .|+|||+|.+.++|.+|++.|||..|.|| +|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~gr---~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVFGN---RI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccCCc---eE
Confidence 45666 99999999999998 558999995 998882 28999999999999999999999999988 99
Q ss_pred EEEEeecccc
Q 023320 273 HIEYARSKMR 282 (284)
Q Consensus 273 ~v~~ak~~~~ 282 (284)
+|+||+.++.
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999998753
No 90
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=130.07 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=70.6
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeec
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 115 (284)
.+|||+|||.++|+++|+++|++||.|..|++..+.++ ||||+|.+.++|.+|++.|+|..+. |+.|+|++++.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPG---FAFVEFEDPRDAEDAVRGLDGKVIC---GSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSS---EEEEECSSHHHHHHHHHHHHHSCSS---SCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC---EEEEEECCHHHHHHHHHHHCCCeEC---CcEEEEEEccC
Confidence 47999999999999999999999999999999854455 9999999999999999999999998 99999999977
Q ss_pred CCC
Q 023320 116 NSR 118 (284)
Q Consensus 116 ~~~ 118 (284)
...
T Consensus 75 ~~~ 77 (101)
T 2hvz_A 75 MPR 77 (101)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 91
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=131.12 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCC--CeeCCCCCC
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG--VKFDPQSGS 106 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g--~~~~~~~g~ 106 (284)
....+++++|||+|||+++|+++|+++|++||.|..|++. .+|+ ||||+|.+.++|.+|++.+++ ..+. |+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~-~~kG---~AFVeF~~~e~A~~Ai~~l~~~~~~l~---Gr 97 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML-KGKN---QAFIEMNTEEAANTMVNYYTSVTPVLR---GQ 97 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE-GGGT---EEEEECSCHHHHHHHHHHHHHHCCCBT---TB
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhccCCceEC---Ce
Confidence 3346678999999999999999999999999999999988 4466 999999999999999998874 6787 99
Q ss_pred eEEEEEeecCCCC
Q 023320 107 VLHIELARSNSRK 119 (284)
Q Consensus 107 ~l~v~~a~~~~~~ 119 (284)
+|+|+|++.+...
T Consensus 98 ~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 98 PIYIQFSNHKELK 110 (119)
T ss_dssp CCEEEECSSSSCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999766543
No 92
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=128.29 Aligned_cols=80 Identities=19% Similarity=0.368 Sum_probs=73.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee-----CCcCeEEEEeCCHHHHHHHHHHh-CCCccCCCCCCcE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGM 272 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~A~~~l-ng~~~~~~~~~~l 272 (284)
.+.++|||+|||..+|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.| ||..|.++ .|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~---~l 89 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR---RL 89 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC---BC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC---EE
Confidence 45899999999999999999999999999999998764 34679999999999999999999 99999988 99
Q ss_pred EEEEeeccc
Q 023320 273 HIEYARSKM 281 (284)
Q Consensus 273 ~v~~ak~~~ 281 (284)
+|+|++.+.
T Consensus 90 ~v~~a~~~~ 98 (107)
T 2cph_A 90 VLEWADSEV 98 (107)
T ss_dssp EEEECCCCC
T ss_pred EEEeCCCCC
Confidence 999998764
No 93
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=128.55 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=73.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.++++|||+|||..+|+++|+++|+.||.|.+|.+..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 97 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ---PISV 97 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc---EEEE
Confidence 34789999999999999999999999999999999873 3367999999999999999999999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+||+.+..
T Consensus 98 ~~a~~~~~ 105 (106)
T 1p27_B 98 DWCFVRGP 105 (106)
T ss_dssp EESEESSC
T ss_pred EeecCCCC
Confidence 99987653
No 94
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.80 E-value=7.7e-20 Score=133.07 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=72.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
...+|||+|||+++|+++|+++|+.|| .|..+.+..+.+++||||+|.+.++|++|++.|||..|.|+ .|+|++++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGS---VITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTE---EEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEECC
Confidence 367999999999999999999999999 99999987666789999999999999999999999999988 99999997
Q ss_pred ccc
Q 023320 279 SKM 281 (284)
Q Consensus 279 ~~~ 281 (284)
.+.
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 653
No 95
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=3.9e-19 Score=130.97 Aligned_cols=80 Identities=20% Similarity=0.233 Sum_probs=73.6
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+.++|||+|||.++|+++|+++|+.||.|..|.+..+ .+++||||+|.+.++|++|++.|||..|.|+ .|+|+|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 82 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK---AIKVEQ 82 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS---BCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE---EEEEEE
Confidence 4789999999999999999999999999999999873 4568999999999999999999999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 987653
No 96
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=131.49 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
....++|||+|||.++|+++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 102 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR---KIEVN 102 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 345889999999999999999999999999999999863 3478999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
||+.+.
T Consensus 103 ~a~~~~ 108 (109)
T 2err_A 103 NATARV 108 (109)
T ss_dssp ECCCSC
T ss_pred ECCCCc
Confidence 998763
No 97
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=3.3e-19 Score=131.23 Aligned_cols=81 Identities=15% Similarity=0.231 Sum_probs=73.9
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|++|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V 89 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---QIRT 89 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE---ECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 45889999999999999999999999999999999874 3357999999999999999999999999987 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 90 ~~a~~~~~ 97 (115)
T 2dgo_A 90 NWATRKPP 97 (115)
T ss_dssp EESSCCCC
T ss_pred EEccCCCC
Confidence 99987653
No 98
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=2.6e-19 Score=126.30 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee--CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR--GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~--~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR---EIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB---CCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 35789999999999999999999999999999998873 3467999999999999999999999999987 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987653
No 99
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.80 E-value=1.4e-18 Score=127.86 Aligned_cols=87 Identities=21% Similarity=0.323 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..++.++|||+|||.++|+++|+++|++||.|..|++..+...+. .||||+|.+.++|++|++.|+|..|. |+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG---MKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 355679999999999999999999999999999999986543332 29999999999999999999999998 9999
Q ss_pred EEEEeecCCCCC
Q 023320 109 HIELARSNSRKK 120 (284)
Q Consensus 109 ~v~~a~~~~~~~ 120 (284)
+|+|++.+....
T Consensus 98 ~V~~a~~~~~~~ 109 (115)
T 2cpz_A 98 KVQLKRSKNDSK 109 (115)
T ss_dssp EEECCCCSCCCC
T ss_pred EEEEcCCCCcCC
Confidence 999998775543
No 100
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6.7e-19 Score=123.71 Aligned_cols=79 Identities=23% Similarity=0.470 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++. ++ ||||+|.+.++|++|++.|+|..+. |+.|+|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KN---YGFVHIEDKTAAEDAIRNLHHYKLH---GVNINVE 75 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TT---EEEEEESSHHHHHHHHHHHTTCBCS---SCBCEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHhcCCccC---CcEEEEE
Confidence 4568999999999999999999999999999999998 77 9999999999999999999999998 9999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
|++.....
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876554
No 101
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.5e-19 Score=129.11 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCcc---CCCCCCc
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTL---PSSDRGG 271 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~---~~~~~~~ 271 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..+ .++ .
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~---~ 87 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR---P 87 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS---C
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc---e
Confidence 4588999999999999999999999999999999877 34578999999999999999999999997 656 9
Q ss_pred EEEEEeecccc
Q 023320 272 MHIEYARSKMR 282 (284)
Q Consensus 272 l~v~~ak~~~~ 282 (284)
|+|.|++.+.+
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987654
No 102
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=123.92 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=70.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh-CCCccCCCCCCcEEEEEe
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL-QDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l-ng~~~~~~~~~~l~v~~a 277 (284)
.+.++|||+|||.++|+++|+++|++||.|.+|++... ++||||+|.+.++|.+|++.| ||..+.|+ .|+|+||
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTE---ECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCC---EEEEEec
Confidence 45789999999999999999999999999999999875 489999999999999999999 99999977 9999998
Q ss_pred e
Q 023320 278 R 278 (284)
Q Consensus 278 k 278 (284)
|
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 103
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=125.44 Aligned_cols=87 Identities=18% Similarity=0.302 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++..+......||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 87 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA---TKPLYV 87 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC---CcEEEE
Confidence 35578999999999999999999999999999999998651122339999999999999999999999998 999999
Q ss_pred EEeecCCCCC
Q 023320 111 ELARSNSRKK 120 (284)
Q Consensus 111 ~~a~~~~~~~ 120 (284)
.|++......
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9998776543
No 104
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-19 Score=129.72 Aligned_cols=76 Identities=16% Similarity=0.252 Sum_probs=71.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
..++|||+|||.++|+++|+++|+.||.|.+|++. .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+||+.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGR---NLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTE---ECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEEeccC
Confidence 47899999999999999999999999999999988 4568999999999999999999999999988 999999987
Q ss_pred c
Q 023320 280 K 280 (284)
Q Consensus 280 ~ 280 (284)
|
T Consensus 101 ~ 101 (101)
T 2la4_A 101 R 101 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 105
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.79 E-value=6.5e-19 Score=122.37 Aligned_cols=80 Identities=23% Similarity=0.346 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++++++|+++|++||.|..|++..+...+.. ||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 456899999999999999999999999999999998865333332 9999999999999999999999998 99999
Q ss_pred EEEee
Q 023320 110 IELAR 114 (284)
Q Consensus 110 v~~a~ 114 (284)
|+|++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99975
No 106
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=3.6e-19 Score=133.54 Aligned_cols=81 Identities=22% Similarity=0.279 Sum_probs=74.5
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+ .+++||||+|.+.++|++|++.|||..|.|+ .|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---~l~ 119 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---RIR 119 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS---CCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 356899999999999999999999999999999999863 5678999999999999999999999999988 999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|+|++.+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998764
No 107
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-19 Score=127.69 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=75.7
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
+..++.++|||+|||.++|+++|+++|++||.|..|.+..+..++. +||||+|.+.++|++|++.|+|..+. |+.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 84 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD---GRE 84 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT---TBC
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC---CcE
Confidence 4456789999999999999999999999999999999885433222 29999999999999999999999998 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.+++.....
T Consensus 85 l~V~~a~~~~~~ 96 (103)
T 2dnm_A 85 LRVQVARYGRRD 96 (103)
T ss_dssp CEEEECSSCCSC
T ss_pred EEEEECCcCCCC
Confidence 999999876543
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=130.88 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=74.6
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGF----NMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v----~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|+.||.| ..+++..+.+++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK---ILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC---BCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc---EEE
Confidence 3458999999999999999999999999998 677777777789999999999999999999999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+||+.+..
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987654
No 109
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=123.69 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
+++++|||+|||.++|+++|+++|++||.|..|++..+..++. +||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA---GRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC---CcEEEE
Confidence 3578999999999999999999999999999999985432222 29999999999999999999999998 999999
Q ss_pred EEeecCCCCC
Q 023320 111 ELARSNSRKK 120 (284)
Q Consensus 111 ~~a~~~~~~~ 120 (284)
++++.+....
T Consensus 80 ~~a~~~~~~~ 89 (95)
T 2dnz_A 80 GHVTERLDGG 89 (95)
T ss_dssp EESSCCCCCC
T ss_pred EEcccccCCC
Confidence 9998776543
No 110
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=127.74 Aligned_cols=80 Identities=15% Similarity=0.290 Sum_probs=72.8
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCce-EEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc--
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFN-MLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG-- 271 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~-~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~-- 271 (284)
.+.++|||+|||.++|+++|+++|++||.|. +|++..+ .+++||||+|.+.++|++|++.|||..|.++ .
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~~~ 83 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA---TPA 83 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC---SSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC---Ccc
Confidence 3588999999999999999999999999999 9998874 3457999999999999999999999999988 7
Q ss_pred --EEEEEeeccc
Q 023320 272 --MHIEYARSKM 281 (284)
Q Consensus 272 --l~v~~ak~~~ 281 (284)
|+|+||+...
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998654
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.79 E-value=3.3e-19 Score=130.15 Aligned_cols=82 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|+.||.|.+|.+..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V 100 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ---TIQV 100 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc---EEEE
Confidence 35789999999999999999999999999999998763 3468999999999999999999999999977 9999
Q ss_pred EEeeccccC
Q 023320 275 EYARSKMRK 283 (284)
Q Consensus 275 ~~ak~~~~~ 283 (284)
+|++.+..+
T Consensus 101 ~~a~~~~~~ 109 (110)
T 1oo0_B 101 DWCFVKGPK 109 (110)
T ss_dssp EESEESSCC
T ss_pred EEcccCCCC
Confidence 999877543
No 112
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=1.2e-18 Score=128.80 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
...++.++|||+|||.++|+++|+++|++||.|..|++..+...+ ++||||+|.+.++|++|++.|+|..+. |+.
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~ 111 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG---TKR 111 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET---TEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC---CEE
Confidence 346677999999999999999999999999999999998543221 229999999999999999999999998 999
Q ss_pred EEEEEee
Q 023320 108 LHIELAR 114 (284)
Q Consensus 108 l~v~~a~ 114 (284)
|+|+|++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999875
No 113
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=124.49 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
++..+.++|||+|||.++|+++|+++|++||.|..|++..+...+ ++||||+|.+.++|++|++ |+|..+. |+.
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM---GKK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS---SCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC---CeE
Confidence 345678999999999999999999999999999999998542211 2299999999999999998 9999998 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.++......
T Consensus 81 l~V~~a~~~~~~ 92 (99)
T 2dgs_A 81 VEVKRAEPRDSK 92 (99)
T ss_dssp CEEEECCCCCCC
T ss_pred EEEEECCCCccc
Confidence 999999876543
No 114
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=129.38 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=72.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeeccc
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSKM 281 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~~ 281 (284)
++|||+|||.++|+++|+++|++||.|..|.+..+ +++||||+|.+.++|.+|++.|||..+.|+ .|+|+|++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCCC
Confidence 48999999999999999999999999999999887 678999999999999999999999999988 99999998765
Q ss_pred c
Q 023320 282 R 282 (284)
Q Consensus 282 ~ 282 (284)
+
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=124.85 Aligned_cols=77 Identities=26% Similarity=0.514 Sum_probs=71.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||.++|+++|+++|++||.|..|.+.+ +||||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEEcc
Confidence 4588999999999999999999999999999999884 4999999999999999999999999987 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+.+
T Consensus 81 ~~~~ 84 (92)
T 2dgt_A 81 SRLR 84 (92)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7754
No 116
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=124.46 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
..+.++|||+|||.++|+++|+++|++||.|.. |++..+..++ ++||||+|.+.++|++|++.|+|..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 345799999999999999999999999999998 8888653322 239999999999999999999999998
Q ss_pred CCCCCeEEEEEee
Q 023320 102 PQSGSVLHIELAR 114 (284)
Q Consensus 102 ~~~g~~l~v~~a~ 114 (284)
|+.|+|++++
T Consensus 90 ---g~~l~V~~A~ 99 (99)
T 2la6_A 90 ---GNPIKVSFAT 99 (99)
T ss_dssp ---SSBCEEEECC
T ss_pred ---CcEEEEEecC
Confidence 9999999874
No 117
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=3.7e-19 Score=137.04 Aligned_cols=80 Identities=15% Similarity=0.139 Sum_probs=72.2
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
..+|||+||++.+|+++|+++|++||.|.+|.+..+.+++||||+|.+.++|.+|++.|||..|.+. ++.|+|+|||.+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKLT 124 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEEEECSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEEEEecCC
Confidence 4568999999999999999999999999999998766678999999999999999999999999752 349999999976
Q ss_pred c
Q 023320 281 M 281 (284)
Q Consensus 281 ~ 281 (284)
.
T Consensus 125 ~ 125 (164)
T 1sjr_A 125 S 125 (164)
T ss_dssp S
T ss_pred c
Confidence 4
No 118
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=8.7e-20 Score=130.88 Aligned_cols=79 Identities=6% Similarity=0.038 Sum_probs=72.2
Q ss_pred CcCeEEEeCCCC------CCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCC-CC
Q 023320 200 PCSTLFIANLGP------NCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS-SD 268 (284)
Q Consensus 200 ~~~~L~v~nL~~------~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~-~~ 268 (284)
.+++|||+|||. ++++++|+++|++||.|.+|++..+ .++|||||+|.+.++|.+|++.|||..|.+ +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r- 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH- 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC-
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe-
Confidence 378999999999 9999999999999999999998763 346899999999999999999999999997 7
Q ss_pred CCcEEEEEeeccc
Q 023320 269 RGGMHIEYARSKM 281 (284)
Q Consensus 269 ~~~l~v~~ak~~~ 281 (284)
.|+|.+|+.+.
T Consensus 84 --~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 --RLFLYTMKDVE 94 (100)
T ss_dssp --BCEEEESHHHH
T ss_pred --EEEEEECchhh
Confidence 99999997653
No 119
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=127.32 Aligned_cols=78 Identities=18% Similarity=0.188 Sum_probs=72.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+.++|||+|||..+++++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~ 90 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR---PINVS 90 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC---EEEEE
Confidence 35789999999999999999999999999999999874 3467999999999999999999999999988 99999
Q ss_pred Eeec
Q 023320 276 YARS 279 (284)
Q Consensus 276 ~ak~ 279 (284)
|+++
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9985
No 120
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.2e-19 Score=125.58 Aligned_cols=85 Identities=18% Similarity=0.352 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCC-----CCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-----GNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
.++++|||+|||.++|+++|+++|++||.|..|++..+.. ..++||||+|.+.++|++|++.|+|..+. |+.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD---GHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET---TEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC---CeE
Confidence 4679999999999999999999999999999999885433 11239999999999999999999999998 999
Q ss_pred EEEEEeecCCCCC
Q 023320 108 LHIELARSNSRKK 120 (284)
Q Consensus 108 l~v~~a~~~~~~~ 120 (284)
|+|.+++......
T Consensus 80 l~V~~a~~~~~~~ 92 (98)
T 2cpf_A 80 LEVRISERATKPA 92 (98)
T ss_dssp CEEECSSCSSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999997765543
No 121
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=129.21 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC--CCeeCCCCCCeE
Q 023320 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN--GVKFDPQSGSVL 108 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g~~l 108 (284)
..++++|||+|||++ +|+++|+++|++||.|..|.+. ..++ ||||+|.+.++|..|++.|+ +..+. |+.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~-~~kg---~aFVef~~~~~A~~Ai~~l~~~~~~l~---Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM-RMKS---QAFIEMETREDAMAMVDHCLKKALWFQ---GRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHHHSCCCSS---SSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhccCCceEC---CEEE
Confidence 667899999999998 9999999999999999999987 5566 99999999999999999885 45577 9999
Q ss_pred EEEEeecCCCCC
Q 023320 109 HIELARSNSRKK 120 (284)
Q Consensus 109 ~v~~a~~~~~~~ 120 (284)
+|+|++......
T Consensus 95 ~V~~a~~~~~~~ 106 (112)
T 1x4f_A 95 KVDLSEKYKKLV 106 (112)
T ss_dssp EEEEECSCSSSS
T ss_pred EEEECccccccc
Confidence 999997765543
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-19 Score=129.96 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=71.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
.++|||+|||.++|+++|+++|++||.|.+|.+.. +++||||+|.+.++|.+|++.|||..|.++ .|+|+||+..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEECCCC
Confidence 68999999999999999999999999999999875 458999999999999999999999999988 9999999865
Q ss_pred c
Q 023320 281 M 281 (284)
Q Consensus 281 ~ 281 (284)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 123
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=4.2e-19 Score=132.39 Aligned_cols=87 Identities=13% Similarity=0.247 Sum_probs=73.9
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
.++.+++++|||+|||+.+++++|+ ++|++||.|.+|.+....+. ++||||+|.+.++|..|+..|||..+.
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~-rG~aFV~F~~~~~A~~Ai~~lng~~l~--- 98 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDN-SGKAYIVFATQESAQAFVEAFQGYPFQ--- 98 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSS-CCCEEEEESSHHHHHHHHHHSTTCCCT---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCc-CCEEEEEECCHHHHHHHHHHHCCCEeC---
Confidence 4456778999999999999999876 79999999998887632221 229999999999999999999999998
Q ss_pred CCeEEEEEeecCCCC
Q 023320 105 GSVLHIELARSNSRK 119 (284)
Q Consensus 105 g~~l~v~~a~~~~~~ 119 (284)
|+.|+|.|++.....
T Consensus 99 gr~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 99 GNPLVITFSETPQSQ 113 (127)
T ss_dssp TSCCEEEECCCCCHH
T ss_pred CCEEEEEEccCcchh
Confidence 999999999877654
No 124
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=8.2e-19 Score=122.40 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++..+...+ .+||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 457899999999999999999999999999999998653222 239999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.|++.+
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999764
No 125
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=5.5e-19 Score=130.02 Aligned_cols=78 Identities=17% Similarity=0.245 Sum_probs=72.6
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
++++|||+|||..+|+++|+++|+.||.|.+|.+.. +.+++||||+|.+.++|.+|++.|||..+.|+ .|+|+|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC---BCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEec
Confidence 478999999999999999999999999999999876 45578999999999999999999999999988 99999997
Q ss_pred cc
Q 023320 279 SK 280 (284)
Q Consensus 279 ~~ 280 (284)
.+
T Consensus 84 ~~ 85 (115)
T 3lqv_A 84 AN 85 (115)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 126
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=125.68 Aligned_cols=88 Identities=22% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeC-CCC--eeEEEEEecCHHHHHHHHHHh-CCCeeCCCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTG-RGN--QVVAFATFVNHQTAVAALHEL-NGVKFDPQSG 105 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~-~~~--~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g 105 (284)
+...+.++|||+|||.++|+++|+++|++||.|..|++..+. ..+ .+||||+|.+.++|.+|++.| +|..+. |
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---g 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---G 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS---S
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC---C
Confidence 345678999999999999999999999999999999998541 111 229999999999999999999 999998 9
Q ss_pred CeEEEEEeecCCCCC
Q 023320 106 SVLHIELARSNSRKK 120 (284)
Q Consensus 106 ~~l~v~~a~~~~~~~ 120 (284)
+.|+|.|++......
T Consensus 87 ~~l~v~~a~~~~~~~ 101 (107)
T 2cph_A 87 RRLVLEWADSEVTVQ 101 (107)
T ss_dssp CBCEEEECCCCCCCC
T ss_pred CEEEEEeCCCCCCCC
Confidence 999999998775543
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-19 Score=124.54 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=71.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||.++|+++|+++|++||.|..|++.++ ||||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGK---RINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEECC
Confidence 45889999999999999999999999999999998844 899999999999999999999999988 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 128
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-18 Score=126.18 Aligned_cols=86 Identities=26% Similarity=0.418 Sum_probs=74.9
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
+...+.++|||+|||.++|+++|+++|++||.|..|++..+.+ .+.||||+|.+.++|++|++.|++..|. |+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYD---GYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEE
Confidence 3455679999999999999999999999999999999874322 2339999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|+|++.....
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 9999776543
No 129
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=128.07 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=74.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhC------CCccCCCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQ------DSTLPSSD 268 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~ln------g~~~~~~~ 268 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|| |..|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~- 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR- 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE-
Confidence 45889999999999999999999999999999998863 457899999999999999999999 9999988
Q ss_pred CCcEEEEEeecccc
Q 023320 269 RGGMHIEYARSKMR 282 (284)
Q Consensus 269 ~~~l~v~~ak~~~~ 282 (284)
.|+|+|++.+..
T Consensus 92 --~l~v~~a~~~~~ 103 (111)
T 1x4h_A 92 --QLKVDLAVTRDE 103 (111)
T ss_dssp --EEEEECCCCCCC
T ss_pred --EEEEEECCCCcc
Confidence 999999987643
No 130
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=125.33 Aligned_cols=86 Identities=22% Similarity=0.339 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+..++ +.||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD---GRQIR 85 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT---SCCCE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 5568999999999999999999999999999999998542222 229999999999999999999999998 99999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|.+++......
T Consensus 86 v~~a~~~~~~~ 96 (102)
T 1x5s_A 86 VDQAGKSSDNR 96 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEECCCCCCCC
Confidence 99998876543
No 131
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.1e-18 Score=122.75 Aligned_cols=85 Identities=18% Similarity=0.357 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++..+..+. +.||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 89 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK---ENIIK 89 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS---SCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 35567899999999999999999999999999999998554222 239999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.+++....
T Consensus 90 v~~a~~~~~ 98 (100)
T 2do4_A 90 VAISNSGPS 98 (100)
T ss_dssp EEECCCCSC
T ss_pred EEECCCCCC
Confidence 999976643
No 132
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=6e-19 Score=127.18 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=71.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||.++|+++|+++|++||.|..|.+.+ +||||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEETTE---EEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEEcC
Confidence 4578999999999999999999999999999999873 5899999999999999999999999987 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7654
No 133
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=125.33 Aligned_cols=87 Identities=18% Similarity=0.274 Sum_probs=75.4
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
...++.++|||+|||.++|+++|+++|++||.|..|++..+...+. +||||+|.+.++|++|++.|+|..+. |+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY---GKP 86 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS---SCB
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC---CeE
Confidence 3456789999999999999999999999999999999885432222 29999999999999999999999998 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.+++.....
T Consensus 87 l~v~~a~~~~~~ 98 (105)
T 1x5u_A 87 IRVNKASAHNKN 98 (105)
T ss_dssp CEEEETTTTSCC
T ss_pred EEEEECCCCCcC
Confidence 999999776543
No 134
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.2e-18 Score=122.99 Aligned_cols=84 Identities=20% Similarity=0.343 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++++++|+++|++||.|..|++..+....++||||+|.+.++|++|++.|+|..+. |+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~ 81 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS---GREIDVR 81 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT---TBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 4568999999999999999999999999999999988532222339999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
+++....
T Consensus 82 ~a~~~~~ 88 (92)
T 2dgv_A 82 IDRNASG 88 (92)
T ss_dssp ECSCCSS
T ss_pred EcCCCCC
Confidence 9977654
No 135
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=9.4e-19 Score=133.18 Aligned_cols=82 Identities=17% Similarity=0.247 Sum_probs=74.7
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|+.||.|.+|++..+. +++||||+|.+.++|.+|++.|||..|.++ .|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 115 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---RLK 115 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC---EEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe---EEE
Confidence 3457899999999999999999999999999999998743 367999999999999999999999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+||+.+.+
T Consensus 116 v~~a~~~~~ 124 (139)
T 1u6f_A 116 VALAASGHQ 124 (139)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.78 E-value=1.4e-19 Score=127.30 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=66.2
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCC--CceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+|||+|||.++|+++|+++|++|| .|.+|++..+ .++|||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ---NPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC---CCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE---EEEEE
Confidence 4799999999999999999999999 9999998773 4567999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
+++.+.
T Consensus 79 ~~~~~~ 84 (90)
T 3p5t_L 79 PSNKLE 84 (90)
T ss_dssp CC----
T ss_pred ECCCCc
Confidence 998764
No 137
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.5e-18 Score=123.20 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..+++++|||+|||.++|+++|+++|++||.|..|++..+..++. +||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 87 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---GRRI 87 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEE
Confidence 355689999999999999999999999999999999986543322 39999999999999999999999998 9999
Q ss_pred EEEEeec
Q 023320 109 HIELARS 115 (284)
Q Consensus 109 ~v~~a~~ 115 (284)
+|+|+++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.78 E-value=2.3e-19 Score=127.90 Aligned_cols=81 Identities=27% Similarity=0.360 Sum_probs=73.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHH----HHhccCCCceEEEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 199 QPCSTLFIANLGPNCTEDELK----QTLSVYPGFNMLKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~----~~F~~~G~v~~v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
+++++|||+|||.++++++|+ ++|++||.|..|.+.. +.+++||||+|.+.++|.+|++.|||..|.|+ .|+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK---PMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc---EEE
Confidence 468999999999999999999 9999999999999875 34568999999999999999999999999977 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999987643
No 139
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.18 Aligned_cols=80 Identities=20% Similarity=0.199 Sum_probs=72.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+.++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~ 89 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR---PMHVK 89 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC---EEEEE
Confidence 45889999999999999999999999999999998874 2357999999999999999999999999977 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++...
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 140
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=123.16 Aligned_cols=80 Identities=19% Similarity=0.284 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++.++|||+|||.++++++|+++|++||.|..|++..+..++. +||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 89 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF---GRVIK 89 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET---TEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 45679999999999999999999999999999999985433222 29999999999999999999999998 99999
Q ss_pred EEEee
Q 023320 110 IELAR 114 (284)
Q Consensus 110 v~~a~ 114 (284)
|+|++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 141
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.6e-19 Score=129.16 Aligned_cols=79 Identities=14% Similarity=0.238 Sum_probs=73.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
...++|||+|||..+|+++|+++|+.||.|..|++..+ ++||||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~ 97 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYWGK 97 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCc---EEEEEecC
Confidence 34789999999999999999999999999999999876 58999999999999999999999999987 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
No 142
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=124.06 Aligned_cols=86 Identities=23% Similarity=0.332 Sum_probs=75.0
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...++++|||+|||.++|+++|+++|++||.|..|++..+...+. +||||+|.+.++|.+|++.|+|..+. |+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ---GRML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS---SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC---CcEE
Confidence 355789999999999999999999999999999999885431222 29999999999999999999999998 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|.+++.....
T Consensus 81 ~V~~a~~~~~~ 91 (99)
T 1whw_A 81 HVLPSTIKKEA 91 (99)
T ss_dssp EEEECCCCSTT
T ss_pred EEEEcCCCccc
Confidence 99999877553
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.8e-19 Score=126.99 Aligned_cols=77 Identities=17% Similarity=0.225 Sum_probs=71.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
...++|||+|||.++|+++|+++|++||.|.+|++.. +.++|||||+|.+.++|.+|++ +||..|.|+ .|.|.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l~V~ 84 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET---DLLIL 84 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT---TCEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE---EEEEE
Confidence 3478999999999999999999999999999999987 4467899999999999999999 999999988 99999
Q ss_pred Eeec
Q 023320 276 YARS 279 (284)
Q Consensus 276 ~ak~ 279 (284)
+++.
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9765
No 144
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.78 E-value=3.7e-18 Score=123.46 Aligned_cols=85 Identities=26% Similarity=0.356 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCC---Ce
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSG---SV 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g---~~ 107 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|++..+..+. ++||||+|.+.++|++|++.|+|..+. | +.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---gg~~~~ 88 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM---PGASSS 88 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC---TTCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC---CCCCcc
Confidence 4568999999999999999999999999999999998553222 239999999999999999999999997 6 99
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.|++.....
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999877554
No 145
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.4e-19 Score=128.56 Aligned_cols=77 Identities=12% Similarity=0.192 Sum_probs=71.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCC-----CCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS-----SDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~-----~~~~~l~v 274 (284)
..++|||+|||.++|+++|+++|++||.|..|.+..+ +||||+|.+.++|++||+.|||..|.+ + .|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---YIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE---EEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce---EEEE
Confidence 3789999999999999999999999999999999876 799999999999999999999999997 6 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
++|+.+.+
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99987654
No 146
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=7.8e-19 Score=127.47 Aligned_cols=78 Identities=17% Similarity=0.253 Sum_probs=71.9
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.+.++|||+|||..+|+++|+++|+.||.|.+|.+..+ .+++||||+|.+.++|++|++.|||..|.++ .|+|+
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~ 103 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR---PMNIQ 103 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence 45889999999999999999999999999999998874 4467999999999999999999999999988 99999
Q ss_pred Eeec
Q 023320 276 YARS 279 (284)
Q Consensus 276 ~ak~ 279 (284)
||.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9864
No 147
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.5e-19 Score=127.37 Aligned_cols=77 Identities=16% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
...+++|||+|||.++++++|+++|++||.|..|++. ..++ ||||+|.+.++|.+|+..|+|..+. |+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKG---CCFIKYDTHEQAAVCIVALANFPFQ---GRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCEET---TEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 4457999999999999999999999999999999987 5566 9999999999999999999999998 9999999
Q ss_pred Eeec
Q 023320 112 LARS 115 (284)
Q Consensus 112 ~a~~ 115 (284)
|++.
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9875
No 148
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=130.00 Aligned_cols=80 Identities=11% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHH---HHhccCCCceEEEEEee-------CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 199 QPCSTLFIANLGPNCTEDELK---QTLSVYPGFNMLKMRAR-------GGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~---~~F~~~G~v~~v~~~~~-------~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
...++|||+|||.++++++|+ ++|++||.|..|.+..+ .+++||||+|.+.++|++|++.|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr- 91 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR- 91 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE-
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE-
Confidence 347899999999999999999 99999999999999864 3347999999999999999999999999988
Q ss_pred CCcEEEEEeeccc
Q 023320 269 RGGMHIEYARSKM 281 (284)
Q Consensus 269 ~~~l~v~~ak~~~ 281 (284)
.|+|+||+.+.
T Consensus 92 --~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 --TLKASLGTTKY 102 (111)
T ss_dssp --EEEEESCCCCS
T ss_pred --EEEEEeccccc
Confidence 99999998875
No 149
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=124.48 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=71.2
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccC--CCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVY--PGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~--G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..+.++|||+|||..+|+++|+++|++| |.|.+|++. ++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGS---PIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCc---EEEEE
Confidence 3458999999999999999999999999 889988765 46999999999999999999999999977 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
|++.+.+
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9987754
No 150
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=122.59 Aligned_cols=79 Identities=27% Similarity=0.393 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcC--CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRK--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..++++|||+|||..+|+++|+++|++| |.|..|++. ++ ||||+|.+.++|.+|+..|+|..+. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 82 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RD---YAFVHFSNREDAVEAMKALNGKVLD---GSPIE 82 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SS---EEEEEESSHHHHHHHHHHHSSEEET---TEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CC---eEEEEeCCHHHHHHHHHHhCCCEeC---CcEEE
Confidence 5568999999999999999999999999 889888876 77 9999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.|++.....
T Consensus 83 v~~a~~~~~~ 92 (99)
T 2cpd_A 83 VTLAKPVDKD 92 (99)
T ss_dssp EECCCCCCCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 151
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=127.38 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhcc-CCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCc-cCCCCCCcEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSV-YPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDST-LPSSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~-~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~-~~~~~~~~l~ 273 (284)
.+.++|||+|||.++|+++|+++|+. ||.|.+|++..+ .+++||||+|.+.++|.+|++.|||.. |.++ .|+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~---~l~ 83 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK---PVR 83 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS---CCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE---eEE
Confidence 45789999999999999999999999 999999998874 346799999999999999999999999 9988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 152
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=127.36 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCeEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHI 110 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v 110 (284)
+++|||+|||+++||++|+++|++|| .|.+|++..+..++ ++||||+|.+.++|++|++.+ ++..+. |+.|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~---gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL---GQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET---TEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC---CEEEEE
Confidence 57899999999999999999999999 79999887442222 229999999999999999987 566787 999999
Q ss_pred EEeecCC
Q 023320 111 ELARSNS 117 (284)
Q Consensus 111 ~~a~~~~ 117 (284)
+|+.++.
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9997654
No 153
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=124.61 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=73.4
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEE-EEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFC-QLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v-~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++++|||+|||.++|+++|+++|++||.|..+ ++..+...+ .+||||+|.+.++|++|++.|+|..+. |+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC---NRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET---TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 468999999999999999999999999999988 887542222 229999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.++......
T Consensus 80 v~~a~~~~~~ 89 (96)
T 1x5t_A 80 VSYAFKKDSK 89 (96)
T ss_dssp EEESCCCCCC
T ss_pred EEEecccCCC
Confidence 9999876544
No 154
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=4.6e-19 Score=133.51 Aligned_cols=81 Identities=21% Similarity=0.364 Sum_probs=73.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceE--EEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCC----ccCCCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--LKMRA----RGGMPVAFADFEEVEQASIAMEGLQDS----TLPSSD 268 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~--v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~----~~~~~~ 268 (284)
.++++|||+|||+++|+++|+++|++||.|.. |+++. +.++|||||+|.+. +|.+|++.|||. .|.|+
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr- 98 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK- 98 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE-
Confidence 45789999999999999999999999999976 88876 34678999999999 999999999999 99988
Q ss_pred CCcEEEEEeeccccC
Q 023320 269 RGGMHIEYARSKMRK 283 (284)
Q Consensus 269 ~~~l~v~~ak~~~~~ 283 (284)
.|+|+|++.+.++
T Consensus 99 --~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 99 --TINVEFAKGSKRD 111 (131)
T ss_dssp --CCCCEECCCSCCC
T ss_pred --EEEEEECCCCCCC
Confidence 9999999887654
No 155
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=7.4e-19 Score=120.27 Aligned_cols=74 Identities=15% Similarity=0.227 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
.+..|||+||++.+||++|+++|.+||+|.++++. .++| ||||+|.+.++|++|++.|||..+. |++|++.+|
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~-~~kG---faFVey~~~~eA~~Ai~~Ln~~~l~---gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPY-LNQG---IALCKYTTREEANKAQMALNNCVLA---NTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHHTTEEET---TEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEc-CCCc---EEEEEECCHHHHHHHHHHhcCCEEC---CcEEEEEEC
Confidence 36789999999999999999999999999999987 4677 9999999999999999999999999 999999998
Q ss_pred e
Q 023320 114 R 114 (284)
Q Consensus 114 ~ 114 (284)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 3
No 156
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=123.44 Aligned_cols=81 Identities=22% Similarity=0.334 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++. .+++ ||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-~~kg---~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH-KDKG---FGFIRLETRTLAEIAKVELDNMPLR---GKQLRVR 84 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE-TTTT---EEEEECSSSHHHHHHHHHHTTCCBT---TBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe-cCCC---EEEEEECCHHHHHHHHHHhCCCEeC---CceEEEE
Confidence 4567999999999999999999999999999999988 4466 9999999999999999999999998 9999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
|++.....
T Consensus 85 ~a~~~~~~ 92 (99)
T 2cpj_A 85 FACHSASL 92 (99)
T ss_dssp ESSCCSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 157
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=125.77 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhC------CCeeCC
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELN------GVKFDP 102 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~------g~~~~~ 102 (284)
...+.++|||+|||.++|+++|+++|+.||.|..|++..+...+ ++||||+|.+.++|.+|++.|+ |..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 35668999999999999999999999999999999998553222 2299999999999999999999 99998
Q ss_pred CCCCeEEEEEeecCCCCC
Q 023320 103 QSGSVLHIELARSNSRKK 120 (284)
Q Consensus 103 ~~g~~l~v~~a~~~~~~~ 120 (284)
|+.|+|.|+..+....
T Consensus 90 --g~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 90 --GRQLKVDLAVTRDEAA 105 (111)
T ss_dssp --SCEEEEECCCCCCCCC
T ss_pred --CEEEEEEECCCCccCC
Confidence 9999999998775543
No 158
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.78 E-value=1.1e-18 Score=130.49 Aligned_cols=80 Identities=16% Similarity=0.297 Sum_probs=72.9
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|+.||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.++ .|+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 96 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ---PISV 96 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe---EEEE
Confidence 34789999999999999999999999999999998753 3467999999999999999999999999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
+||+.+.
T Consensus 97 ~~a~~~~ 103 (126)
T 3ex7_B 97 DWCFVRG 103 (126)
T ss_dssp EESEESS
T ss_pred EEecCCC
Confidence 9997654
No 159
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.3e-18 Score=123.78 Aligned_cols=82 Identities=15% Similarity=0.260 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
|+++|||+|||.++++++|+++|++||.|..|++..+..++ .+||||+|.+.++|.+|++.|+|..+. |+.|+|.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~ 77 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG---SRFLKCG 77 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 47899999999999999999999999999999998543222 229999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
+++....
T Consensus 78 ~a~~~~~ 84 (96)
T 2x1f_A 78 YSSNSDI 84 (96)
T ss_dssp ECSCSSG
T ss_pred EcCCCCC
Confidence 9987654
No 160
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=6.8e-19 Score=123.36 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=72.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.++|||+|||.++|+++|+++|+.||.|..+++..+ .+++||||+|.+.++|.+|+ .|||..|.|+ .|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~---~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR---QIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE---ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc---EEEEEE
Confidence 679999999999999999999999999999998863 44679999999999999999 9999999988 999999
Q ss_pred eeccccC
Q 023320 277 ARSKMRK 283 (284)
Q Consensus 277 ak~~~~~ 283 (284)
++.++..
T Consensus 82 a~~~~pg 88 (89)
T 3ucg_A 82 KRTNRPG 88 (89)
T ss_dssp TTTTSCC
T ss_pred ccCCCCC
Confidence 9987643
No 161
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=9.7e-19 Score=129.89 Aligned_cols=78 Identities=15% Similarity=0.158 Sum_probs=69.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCe-EEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeecc
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV-AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARSK 280 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~-afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~~ 280 (284)
-.|||+||++.+|+++|+++|++||.|.+|.+..+. ++| |||+|.+.++|.+|++.|||..|.+. +++|+|+|||.+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEEEecCCC
Confidence 456699999999999999999999999999988754 576 99999999999999999999999962 359999999875
Q ss_pred c
Q 023320 281 M 281 (284)
Q Consensus 281 ~ 281 (284)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 3
No 162
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=5.3e-19 Score=138.55 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=72.1
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
++++|||+|||..+|+++|+.+|++||.|..|.+..+ .+++||||+|.+.++|.+||+.|||..|.|+ .|+|.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 147 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ---TIQVD 147 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 4789999999999999999999999999999999874 2467999999999999999999999999977 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 148 ~a~~~~ 153 (165)
T 1rk8_A 148 WCFVKG 153 (165)
T ss_dssp ESEECC
T ss_pred EecCCC
Confidence 997654
No 163
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=124.42 Aligned_cols=86 Identities=22% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
..++.++|||+|||.++|+++|+++|++||.|..|++..+...+ .+||||+|.+.++|.+|++.|+|..|. |+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD---HLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC---CcEE
Confidence 35668999999999999999999999999999999998553322 239999999999999999999999998 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|.|++.....
T Consensus 88 ~v~~a~~~~~~ 98 (103)
T 2cq0_A 88 NVEWAKPSTNS 98 (103)
T ss_dssp EEEESSCCCCS
T ss_pred EEEECCCCCCC
Confidence 99999776543
No 164
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.5e-18 Score=126.35 Aligned_cols=80 Identities=24% Similarity=0.165 Sum_probs=70.4
Q ss_pred CCcCe--EEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCe-EEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCST--LFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPV-AFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~--L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~-afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+++++ |||+||++.+|+++|+++|++||.|.+|.+..+ .+| |||+|.+.++|.+|+++|||..|.++ ++.|+|+
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~ 97 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIE 97 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEE
Confidence 44555 469999999999999999999999999998764 386 99999999999999999999999863 3599999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|||.+.
T Consensus 98 ~Ak~~~ 103 (124)
T 2e5i_A 98 YARPTR 103 (124)
T ss_dssp CCSCSC
T ss_pred EecCCc
Confidence 998764
No 165
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=126.20 Aligned_cols=80 Identities=15% Similarity=0.092 Sum_probs=71.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
+..++|||+|||..+|+++|+++|+.||.|..+.++. +.+++||||+|.+.++|++|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V 89 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR---KVKL 89 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE---ECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe---EEEE
Confidence 3478999999999999999999999999998766554 23467999999999999999999999999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
+|++.+.
T Consensus 90 ~~a~~~~ 96 (98)
T 2cqp_A 90 VLGSGPS 96 (98)
T ss_dssp EESSCSS
T ss_pred EEcCCCC
Confidence 9998764
No 166
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=123.99 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 33 NGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
....+|||+|||+++++++|+ ++|++||.|..|++..+..+ ++||||+|.+.++|++|++.|||..+. |+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~---gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIG---SKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEET---TEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEEC---CeEE
Confidence 356899999999999999999 99999999999999855433 349999999999999999999999998 9999
Q ss_pred EEEEeecCC
Q 023320 109 HIELARSNS 117 (284)
Q Consensus 109 ~v~~a~~~~ 117 (284)
+|++++...
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999997654
No 167
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=124.88 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCC--eeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCC----eeCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPG--FDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGV----KFDPQ 103 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~--v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~----~~~~~ 103 (284)
...-.||||+|||+++|+++|+++|++||. |.+|++..+..++. +||||+|.+.++|.+|++.|||. .+.
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~-- 83 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID-- 83 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET--
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC--
Confidence 455799999999999999999999999996 56787774432222 29999999999999999999997 476
Q ss_pred CCCeEEEEEeec
Q 023320 104 SGSVLHIELARS 115 (284)
Q Consensus 104 ~g~~l~v~~a~~ 115 (284)
||.|.|+||++
T Consensus 84 -Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 -GKTIGVDFAKS 94 (95)
T ss_dssp -TEEEEEEECCC
T ss_pred -CEEEEEEEccC
Confidence 99999999975
No 168
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-18 Score=125.11 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC-----C
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG-----S 106 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g-----~ 106 (284)
....++|||+|||+++|+++|+++|++||.|..|+|..+ + ||||+|.+.++|++||+.|||..|. | +
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~~~~~ 83 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--G---TGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETA 83 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--T---EEEEEESSHHHHHHHHHHSSSEEEE---CTTSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--C---EEEEEECCHHHHHHHHHHHCcCCcc---CCcCcce
Confidence 456799999999999999999999999999999999843 5 9999999999999999999999998 8 9
Q ss_pred eEEEEEeecCCCC
Q 023320 107 VLHIELARSNSRK 119 (284)
Q Consensus 107 ~l~v~~a~~~~~~ 119 (284)
.|+|++++.+...
T Consensus 84 ~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 84 YIRVKVDGPRSPS 96 (108)
T ss_dssp EEEEEESSCCSCC
T ss_pred EEEEEeCCCCCCC
Confidence 9999999876543
No 169
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=8.7e-19 Score=127.64 Aligned_cols=89 Identities=12% Similarity=0.171 Sum_probs=68.8
Q ss_pred CCCCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 26 YHHQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 26 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
........+.++|||+|||.++|+++|+++|+.||.|..|++..+..++ ++||||+|.+.++|.+|+..+ +..+.
T Consensus 16 ~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~-- 92 (109)
T 2rs2_A 16 PRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD-- 92 (109)
T ss_dssp ----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET--
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC--
Confidence 3334456678999999999999999999999999999999998543222 229999999999999999976 58887
Q ss_pred CCCeEEEEEeecCCC
Q 023320 104 SGSVLHIELARSNSR 118 (284)
Q Consensus 104 ~g~~l~v~~a~~~~~ 118 (284)
|+.|+|.++.....
T Consensus 93 -g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 93 -SKTIDPKVAFPRRA 106 (109)
T ss_dssp -TEEEEEEECCCCCC
T ss_pred -CEEEEEEEccCCCC
Confidence 99999999976643
No 170
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=2.4e-18 Score=118.87 Aligned_cols=79 Identities=22% Similarity=0.359 Sum_probs=70.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+.+|||+|||.++++++|+++|++||.|..+++..+...+ .+||||+|.+.++|++|++.|+|..+. |+.|+|.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~---g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEECEEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC---CcEEEEEe
Confidence 3589999999999999999999999999999998653333 239999999999999999999999998 99999999
Q ss_pred eecC
Q 023320 113 ARSN 116 (284)
Q Consensus 113 a~~~ 116 (284)
++.+
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 9765
No 171
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=120.89 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh-CCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL-NGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l-~g~~~~~~~g~~l~v 110 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++. .+++ ||||+|.+.++|.+|++.| +|..+. |+.|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~-~~kg---~afV~f~~~~~A~~a~~~l~~~~~~~---g~~l~v 81 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV-QRQQ---CAFIQFATRQAAEVAAEKSFNKLIVN---GRRLNV 81 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE-GGGT---EEEEEESSHHHHHHHHHTTTTTCEET---TEECCE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE-CCCC---EEEEEECCHHHHHHHHHHhcCCeeEC---CCEEEE
Confidence 4567999999999999999999999999999999988 4456 9999999999999999988 999998 999999
Q ss_pred EEee
Q 023320 111 ELAR 114 (284)
Q Consensus 111 ~~a~ 114 (284)
+|++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 9975
No 172
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=124.60 Aligned_cols=86 Identities=22% Similarity=0.317 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+...+ .+||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 85 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRTIR 85 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET---TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 4568999999999999999999999999999999987542221 229999999999999999999999998 99999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|.|++......
T Consensus 86 V~~a~~~~~~~ 96 (102)
T 2cqb_A 86 VNLAKPMRIKE 96 (102)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998765443
No 173
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.4e-18 Score=123.65 Aligned_cols=80 Identities=23% Similarity=0.266 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCC-cccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPD-DVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+++++|||+|||. .+|+++|+++|++||.|..|++. ++ ||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~ 76 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NA---FGFIQFDNPQSVRDAIECESQEMNF---GKKLI 76 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TT---EEEEEESCHHHHHHHHHHHTCSSCB---TTTBC
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCeeC---CcEEE
Confidence 456789999999998 99999999999999999999997 77 9999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|++++.....
T Consensus 77 V~~a~~~~~~ 86 (96)
T 2kvi_A 77 LEVSSSNARP 86 (96)
T ss_dssp EEEEECCCC-
T ss_pred EEEcCcCCCC
Confidence 9999876543
No 174
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=2.6e-18 Score=127.60 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeE-EEEEecCHHHHHHHHHHhCCCeeCCCCC--CeE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVV-AFATFVNHQTAVAALHELNGVKFDPQSG--SVL 108 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--~~l 108 (284)
.+...+|||+||++.+|+++|+++|++||.|.+|++..+.++ | |||+|.+.++|++|++.|||..|. | +.|
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~g---fqAFVef~~~~~A~~Ai~~LnG~~i~---g~~~~L 98 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ---FQALLQYADPVSAQHAKLSLDGQNIY---NACCTL 98 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTE---EEEEEEESCHHHHHHHHHHHTTCEEE---TTEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCC---cEEEEEECCHHHHHHHHHHcCCCeec---CCCcEE
Confidence 345577889999999999999999999999999988754433 6 999999999999999999999997 7 899
Q ss_pred EEEEeecCCCCCcC
Q 023320 109 HIELARSNSRKKRK 122 (284)
Q Consensus 109 ~v~~a~~~~~~~~~ 122 (284)
+|+|++...-....
T Consensus 99 rI~~ak~~~l~v~~ 112 (130)
T 3zzy_A 99 RIDFSKLTSLNVKY 112 (130)
T ss_dssp EEEECSCSSCCCCC
T ss_pred EEEecCCCceeEEe
Confidence 99999887554433
No 175
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=4.4e-18 Score=125.16 Aligned_cols=87 Identities=15% Similarity=0.227 Sum_probs=76.0
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....+.++|||+|||.++|+++|+++|+.||.|..|++..+...+ .+||||+|.+.++|++|++.|+|..|. |+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 86 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG---GRQ 86 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET---TEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 345678999999999999999999999999999999998653222 239999999999999999999999998 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.|++.....
T Consensus 87 l~V~~a~~~~~~ 98 (115)
T 2dgo_A 87 IRTNWATRKPPA 98 (115)
T ss_dssp CEEEESSCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876544
No 176
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=121.62 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++. ++ ||||+|.+.++|++|++.|+|..+. |+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KD---YAFVHMEKEADAKAAIAQLNGKEVK---GKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SS---CEEEEESCHHHHHHHHHHHTTCEET---TEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CC---EEEEEECCHHHHHHHHHHhCCCEEC---CcEEEEE
Confidence 4567999999999999999999999999999999998 67 9999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
+++....
T Consensus 77 ~a~~~~~ 83 (90)
T 2dnp_A 77 LSTKGQK 83 (90)
T ss_dssp ESCCCCC
T ss_pred ECCCCCC
Confidence 9977643
No 177
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=2e-18 Score=125.07 Aligned_cols=89 Identities=20% Similarity=0.269 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+...+ ++||||+|.+.++|.+|++.|+|..+....|+.|+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 5567999999999999999999999999999999998542211 22999999999999999999999987222299999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|.++.......
T Consensus 90 v~~a~~~~~~~ 100 (106)
T 2dgp_A 90 VKPADSESRGG 100 (106)
T ss_dssp EEECCCCSCCC
T ss_pred EEECCcccccC
Confidence 99998765543
No 178
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=128.07 Aligned_cols=81 Identities=19% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCce--------EEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFN--------MLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~--------~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
.+.++|||+|||.++|+++|+++|+.||.|. .|++..+ .+++||||+|.+.++|.+|++.|||..|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4588999999999999999999999999998 5887763 446799999999999999999999999998
Q ss_pred CCCCcEEEEEeecccc
Q 023320 267 SDRGGMHIEYARSKMR 282 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~~ 282 (284)
+ .|+|+|++.+..
T Consensus 93 ~---~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 S---KLKVSLARKKPP 105 (113)
T ss_dssp E---ECEEECSSCCCC
T ss_pred C---EEEEEECCCCCC
Confidence 7 999999987653
No 179
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=1.2e-18 Score=130.63 Aligned_cols=87 Identities=20% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 28 HQQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 28 ~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
.....+++++|||+|||.++|+++|+++|++||.|..|++..+..++ ++||||+|.+.++|++|++.|+|..|. |
T Consensus 39 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~---g 115 (129)
T 2kxn_B 39 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD---G 115 (129)
T ss_dssp CSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS---S
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---C
Confidence 34456778999999999999999999999999999999998542221 229999999999999999999999998 9
Q ss_pred CeEEEEEeecCC
Q 023320 106 SVLHIELARSNS 117 (284)
Q Consensus 106 ~~l~v~~a~~~~ 117 (284)
+.|+|+|++.+.
T Consensus 116 ~~l~V~~a~~~~ 127 (129)
T 2kxn_B 116 RRIRVDFSITKR 127 (129)
T ss_dssp SCCEESCCSSSS
T ss_pred EEEEEEEecCCC
Confidence 999999987653
No 180
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-19 Score=127.38 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=72.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||..+++++|+++|+.||.|..|.+..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~ 83 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR---ALRVD 83 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS---CBEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEE
Confidence 3789999999999999999999999999999998874 2367999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 84 ~a~~~~ 89 (104)
T 1p1t_A 84 NAASEK 89 (104)
T ss_dssp ETTCTT
T ss_pred eCCCcc
Confidence 998764
No 181
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-19 Score=126.98 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||.++|+++|+++|++||.|..+....+.+++||||+|.+.++|++|++.|||..|.++ .|+|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR---AIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE---EEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe---EEEEEEcC
Confidence 458999999999999999999999999987332222245678999999999999999999999999987 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+.+
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 182
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=123.73 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..++++|||+|||.++|+++|+++|+.||.|..|.+..+...+ ++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 96 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPIS 96 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS---SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC---CcEEE
Confidence 4567999999999999999999999999999999998554322 239999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.|++.+.
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998764
No 183
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.77 E-value=2.1e-18 Score=124.36 Aligned_cols=79 Identities=24% Similarity=0.397 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..++++|||+|||.++|+++|+++|++||.|..|++. ++ ||||+|.+.++|++|++.|+|..+. |+.|+|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 78 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KD---YAFIHFDERDGAVKAMEEMNGKDLE---GENIEIV 78 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SS---CEEEEESSHHHHHHHHHHHTTEEET---TEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CC---EEEEEeCCHHHHHHHHHHHCCCccC---CCEEEEE
Confidence 4567999999999999999999999999999999988 77 9999999999999999999999998 9999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
|++.....
T Consensus 79 ~a~~~~~~ 86 (103)
T 2dgu_A 79 FAKPPDQK 86 (103)
T ss_dssp ECCCCCCC
T ss_pred EcCCCccc
Confidence 99876543
No 184
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=127.28 Aligned_cols=79 Identities=10% Similarity=0.129 Sum_probs=71.8
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+ .+++||||+|.+.++|++|++.||+ .|.++ .|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~---~l~ 89 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR---KAN 89 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE---ECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE---EEE
Confidence 345899999999999999999999999999999999873 4568999999999999999999999 89977 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|+||+.+
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9999654
No 185
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=133.72 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
+..++|||+|||+++|+++|+++|+.|| .|..|++..+..++. +||||+|.+.++|.+||+.|+|..|. |+.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~---Gr~l 129 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN---GEKV 129 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET---TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CeEe
Confidence 3568999999999999999999999999 899999986643333 39999999999999999999999998 9999
Q ss_pred EEEEeecCC
Q 023320 109 HIELARSNS 117 (284)
Q Consensus 109 ~v~~a~~~~ 117 (284)
+|.++....
T Consensus 130 ~V~~a~~~~ 138 (156)
T 3n9u_C 130 DVRPATRQN 138 (156)
T ss_dssp EEEECCHHH
T ss_pred EEEEcCCCc
Confidence 999997543
No 186
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=122.18 Aligned_cols=81 Identities=21% Similarity=0.332 Sum_probs=72.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++.++|||+|||..+++++|+++|++||.|..|++..+..+. ++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 89 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY---GRPINV 89 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CCEEEE
Confidence 4567999999999999999999999999999999998654322 239999999999999999999999998 999999
Q ss_pred EEeec
Q 023320 111 ELARS 115 (284)
Q Consensus 111 ~~a~~ 115 (284)
.+++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99864
No 187
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.4e-18 Score=124.05 Aligned_cols=79 Identities=14% Similarity=0.290 Sum_probs=71.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|+.|| |..|+++.+ .+++||||+|.+.++|.+|+ .|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l~V 87 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR---SLRV 87 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE---ECEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe---EEEE
Confidence 3478999999999999999999999996 999998874 34679999999999999999 8999999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987654
No 188
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.8e-18 Score=124.94 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.....++|||+|||.++|+++|+++|++||.|..|++.. +++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 93 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-EKG---YSFVRFSTHESAAHAIVSVNGTTIE---GHVVKC 93 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-TTT---EEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCC---EEEEEECCHHHHHHHHHHcCCCEEC---CcEEEE
Confidence 345679999999999999999999999999999999883 356 9999999999999999999999998 999999
Q ss_pred EEeecCCCCC
Q 023320 111 ELARSNSRKK 120 (284)
Q Consensus 111 ~~a~~~~~~~ 120 (284)
.|++......
T Consensus 94 ~~a~~~~~~~ 103 (109)
T 1x4g_A 94 YWGKESPDMT 103 (109)
T ss_dssp ECCCCCCSSC
T ss_pred EecCCCCCCC
Confidence 9998775543
No 189
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=4e-19 Score=127.41 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCC-CC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-GN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~-~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
....++|||+|||.++|+++|+++|+.|| |..|++..+.+ .+ ++||||+|.+.++|.+|+ .|+|..+. |+.|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~---g~~l 90 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NRRI 90 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT---TBCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC---CeEE
Confidence 45679999999999999999999999999 99999885431 11 229999999999999999 89999998 9999
Q ss_pred EEEEeecCC
Q 023320 109 HIELARSNS 117 (284)
Q Consensus 109 ~v~~a~~~~ 117 (284)
+|++++...
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999997653
No 190
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=2.6e-18 Score=125.34 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=70.1
Q ss_pred CCcCeEEEeCCCCC-CCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 199 QPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 199 ~~~~~L~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.+.++|||+|||.. +|+++|+++|++||.|..|.+ .++||||+|.+.++|.+|++.|||..|.++ .|+|+|+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQ---TLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTE---ECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEEC
Confidence 34689999999999 999999999999999999998 458999999999999999999999999977 9999999
Q ss_pred eccc
Q 023320 278 RSKM 281 (284)
Q Consensus 278 k~~~ 281 (284)
+.+.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8543
No 191
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1.3e-17 Score=124.28 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.++++|||+|||..+++++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 109 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR---PMDIQ 109 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSC---EEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCc---EEEEE
Confidence 45789999999999999999999999999999999873 3578999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
||....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 998654
No 192
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.8e-18 Score=123.60 Aligned_cols=82 Identities=17% Similarity=0.253 Sum_probs=72.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC-----CC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSD-----RG 270 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~-----~~ 270 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++.|||..|.++. +.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 45789999999999999999999999999999999874 34579999999999999999999999995431 33
Q ss_pred cEEEEEeecc
Q 023320 271 GMHIEYARSK 280 (284)
Q Consensus 271 ~l~v~~ak~~ 280 (284)
+|.|.||+.+
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999865
No 193
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=124.40 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=71.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee-----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
.+.++|||+|||.++|+++|+++|+.|| |..|++..+ .+++||||+|.+.++|.+|| .|||..|.++ .|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK---RIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE---ECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc---EEE
Confidence 3478999999999999999999999999 999998763 33679999999999999999 9999999988 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 88 V~~a~~~~~ 96 (104)
T 1wi8_A 88 VDVADQAQD 96 (104)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999987654
No 194
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-19 Score=124.23 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++++++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++.|||..|.++ .|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ---MAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE---SCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE---EEee
Confidence 35789999999999999999999999999999998763 4478999999999999999999999999977 8888
Q ss_pred EEeec
Q 023320 275 EYARS 279 (284)
Q Consensus 275 ~~ak~ 279 (284)
+++++
T Consensus 80 ~~~~s 84 (85)
T 1x4e_A 80 SGPSS 84 (85)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87653
No 195
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.1e-18 Score=120.16 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++++|||+|||.++|+++|+++|++||.|..|++. .+++ ||||+|.+.++|++|++.|+|..+. ..|+.|+|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~-~~~g---~afV~f~~~~~A~~A~~~l~g~~~~-~~g~~l~V 87 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV-KGDS---FAYIQYESLDAAQAACAKMRGFPLG-GPDRRLRV 87 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC-SSSC---CEEEEESSHHHHHHHHHHHTTCBCS-SSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-CCCC---EEEEEECCHHHHHHHHHHHCCCEeC-CCCcEEEE
Confidence 35567999999999999999999999999999999887 3355 9999999999999999999999983 22799999
Q ss_pred EEeecCC
Q 023320 111 ELARSNS 117 (284)
Q Consensus 111 ~~a~~~~ 117 (284)
+|++.+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998764
No 196
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=2.5e-18 Score=133.40 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=73.6
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||..+|+++|+++|+.||.|..|.+..+ .+++||||+|.+.++|.+||+.|||..|.++ .|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR---IIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE---ECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe---EEE
Confidence 345899999999999999999999999999999999874 3457999999999999999999999999977 999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|+||+.+.
T Consensus 113 V~~a~~~~ 120 (156)
T 1h2v_Z 113 TDWDAGFK 120 (156)
T ss_dssp EEEESCCC
T ss_pred EEECCCCC
Confidence 99998654
No 197
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.5e-18 Score=126.77 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
...++|||+|||+++|+++|+++|++||.|..|.+. ..++ ||||+|.+.++|++|++.|||..+. |+.|+|+|
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~-~~~g---~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~V~~ 80 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP-EGGI---TAIVEFLEPLEARKAFRHLAYSKFH---HVPLYLEW 80 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC-SSSS---CEEEEESCHHHHHHHHHHHTTCBSS---SSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe-CCCC---EEEEEeCCHHHHHHHHHHhCCCEEC---CeEEEEEE
Confidence 346899999999999999999999999999999887 4566 9999999999999999999999998 99999999
Q ss_pred eecCCC
Q 023320 113 ARSNSR 118 (284)
Q Consensus 113 a~~~~~ 118 (284)
+.....
T Consensus 81 a~~~~~ 86 (111)
T 1whx_A 81 APIGVF 86 (111)
T ss_dssp EETTTT
T ss_pred CCCCcc
Confidence 987544
No 198
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=118.85 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC---eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN---QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~---~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..++|||+|||.++|+++|+++|++||.|..|++..+..++ .+||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 79 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID---GQEITA 79 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC---CeEEEE
Confidence 46899999999999999999999999999999987543211 129999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
+++...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999654
No 199
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-19 Score=127.66 Aligned_cols=80 Identities=16% Similarity=0.268 Sum_probs=69.5
Q ss_pred CCcCeEEE--eCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCcc-C--CCCCCcEE
Q 023320 199 QPCSTLFI--ANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL-P--SSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v--~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~-~--~~~~~~l~ 273 (284)
.|+++||| +||+.++|+++|+++|++||.|.+|.+..+ ++||||+|.+.++|++|++.|||..| . +. +.+|.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l~ 99 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITLY 99 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC-EEECE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCC-CcEEE
Confidence 45789999 669999999999999999999999988754 68999999999999999999999988 1 11 34999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|.|+++..
T Consensus 100 v~~a~~~p 107 (114)
T 2cq2_A 100 LNFVEKVQ 107 (114)
T ss_dssp EEEESCCC
T ss_pred EEecccCc
Confidence 99998643
No 200
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=121.81 Aligned_cols=83 Identities=17% Similarity=0.203 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCee-EEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe-
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFD-FCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSV- 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~-~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~- 107 (284)
..++++|||+|||.++|+++|+++|++||.|. .|++..+...+. +||||+|.+.++|++|++.|+|..+. |+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~ 82 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP---GATP 82 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES---SCSS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC---CCCc
Confidence 55689999999999999999999999999999 999985532222 39999999999999999999999998 999
Q ss_pred ---EEEEEeecCC
Q 023320 108 ---LHIELARSNS 117 (284)
Q Consensus 108 ---l~v~~a~~~~ 117 (284)
|+|.|++...
T Consensus 83 ~~~l~v~~a~~~~ 95 (99)
T 2div_A 83 AKRFKLNYATYSG 95 (99)
T ss_dssp CEECCEEETTCCS
T ss_pred ceeEEEeecCCCC
Confidence 9999987653
No 201
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=2.3e-18 Score=123.36 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCC------cccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 33 NGINTLFVSGLPD------DVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 33 ~~~~~lfV~nLp~------~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
..+++|||+|||+ ++++++|+++|++||.|.+|++..+...+++ ||||+|.+.++|.+|++.|||..+.
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~--- 80 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD--- 80 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS---
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC---
Confidence 3468999999999 9999999999999999999999866543333 9999999999999999999999998
Q ss_pred C-CeEEEEEeecC
Q 023320 105 G-SVLHIELARSN 116 (284)
Q Consensus 105 g-~~l~v~~a~~~ 116 (284)
| +.|+|.++...
T Consensus 81 g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 81 LKHRLFLYTMKDV 93 (100)
T ss_dssp SSCBCEEEESHHH
T ss_pred CCeEEEEEECchh
Confidence 8 99999998654
No 202
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=7.5e-19 Score=125.98 Aligned_cols=78 Identities=19% Similarity=0.341 Sum_probs=69.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
...++|||+|||.++|+++|+++|+.|| |.+|++..+. +++||||+|.+.++|.+|+ .|||..|.|+ .|+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~---~l~ 91 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR---RIR 91 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB---CCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe---EEE
Confidence 3489999999999999999999999999 9999987643 5789999999999999999 8999999988 999
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
|+|++.+.
T Consensus 92 V~~a~~~~ 99 (100)
T 2j76_E 92 VDVADQAQ 99 (100)
T ss_dssp CEECCCSC
T ss_pred EEeccCCC
Confidence 99998764
No 203
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=122.95 Aligned_cols=77 Identities=27% Similarity=0.323 Sum_probs=68.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCC-CccCCCCCCcEEEEEe
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMRARGGMPVAFADFEEVEQASIAMEGLQD-STLPSSDRGGMHIEYA 277 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~-v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng-~~~~~~~~~~l~v~~a 277 (284)
+.++|||+|||.++|+++|+++|++||. |..+.+.. ++||||+|.+.++|.+|++.||| ..|.++ .|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELHGK---IMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEETTE---ECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeECCE---EEEEEEc
Confidence 4789999999999999999999999999 66666542 47999999999999999999999 999977 9999999
Q ss_pred ecccc
Q 023320 278 RSKMR 282 (284)
Q Consensus 278 k~~~~ 282 (284)
+.+..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87653
No 204
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=3.9e-18 Score=124.40 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...++++|||+|||.++|+++|+++|+.||.|..|++..+..++ ++||||+|.+.++|.+|+..|+|..+. |+.|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l 98 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTI 98 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CcEE
Confidence 35567999999999999999999999999999999987543222 229999999999999999999999998 9999
Q ss_pred EEEEeecCCC
Q 023320 109 HIELARSNSR 118 (284)
Q Consensus 109 ~v~~a~~~~~ 118 (284)
+|.|++.+..
T Consensus 99 ~V~~a~~~~~ 108 (110)
T 1oo0_B 99 QVDWCFVKGP 108 (110)
T ss_dssp EEEESEESSC
T ss_pred EEEEcccCCC
Confidence 9999987643
No 205
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=124.91 Aligned_cols=86 Identities=23% Similarity=0.381 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCee--------EEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCee
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD--------FCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~--------~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
...+.++|||+|||.++|+++|+++|++||.|. .|++..+...+. +||||+|.+.++|++|++.|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999998 588885532222 2999999999999999999999999
Q ss_pred CCCCCCeEEEEEeecCCCC
Q 023320 101 DPQSGSVLHIELARSNSRK 119 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~~~~~ 119 (284)
. |+.|+|.+++.....
T Consensus 91 ~---g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 Q---GSKLKVSLARKKPPM 106 (113)
T ss_dssp T---TEECEEECSSCCCCS
T ss_pred C---CCEEEEEECCCCCCC
Confidence 8 999999999877554
No 206
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=7e-19 Score=125.13 Aligned_cols=80 Identities=23% Similarity=0.304 Sum_probs=71.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|||..+|+++|+++|+.||.|..+ ...+.+++||||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE---EEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEcC
Confidence 458999999999999999999999999998877 33355578999999999999999999999999988 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+.+
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7754
No 207
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=125.41 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=71.0
Q ss_pred CcCeEEEeCCCCCC------CHHHHHHHhccCCCceEEEEEe--eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc
Q 023320 200 PCSTLFIANLGPNC------TEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG 271 (284)
Q Consensus 200 ~~~~L~v~nL~~~~------t~~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~ 271 (284)
..++|||+|||..+ |+++|+++|++||.|.+|.+.+ +.++|||||+|.+.++|.+|++.|||..|.| ++.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g--~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK--QHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST--TCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC--Cce
Confidence 47899999999999 7899999999999999999875 3457899999999999999999999999983 248
Q ss_pred EEEEEeeccc
Q 023320 272 MHIEYARSKM 281 (284)
Q Consensus 272 l~v~~ak~~~ 281 (284)
|+|+|+.+..
T Consensus 92 l~V~~a~~~~ 101 (105)
T 2nlw_A 92 FRVNLFTDFD 101 (105)
T ss_dssp EEEECSCCCC
T ss_pred EEEEEcchHh
Confidence 9999997653
No 208
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=9.3e-18 Score=120.90 Aligned_cols=83 Identities=16% Similarity=0.276 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|+.|| |..|++..+..++. +||||+|.+.++|++|+ .|+|..+. |+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 86 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG---DRSLR 86 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET---TEECE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC---CeEEE
Confidence 44579999999999999999999999997 99999986543332 39999999999999999 89999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.++......
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2dng_A 87 VDIAEGRKQD 96 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEecCCCCC
Confidence 9999876544
No 209
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=127.07 Aligned_cols=82 Identities=16% Similarity=0.321 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
....++|||+|||.++|+++|+++|+.||.|..|++..+...+ ++||||+|.+.++|++|+ .|+|..|. |+.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 97 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL---GVPII 97 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET---TEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC---CeEEE
Confidence 4456999999999999999999999999999999998543221 229999999999999999 99999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.+++...
T Consensus 98 V~~a~~~~ 105 (114)
T 2cq4_A 98 VQASQAEK 105 (114)
T ss_dssp EEEHHHHH
T ss_pred EEecCCCc
Confidence 99987653
No 210
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=7.9e-18 Score=122.11 Aligned_cols=82 Identities=26% Similarity=0.334 Sum_probs=73.1
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
+...++++|||+|||..+|+++|+++|+.||.|..|++..+..+. ++||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 100 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD---GRPM 100 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC---CcEE
Confidence 345678999999999999999999999999999999998654332 239999999999999999999999998 9999
Q ss_pred EEEEee
Q 023320 109 HIELAR 114 (284)
Q Consensus 109 ~v~~a~ 114 (284)
+|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 211
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.1e-18 Score=120.48 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|| ++|+++|+++|++||.|..|.+. .+++||||+|.+.++|.+|++.|||..|.++ .|+|+|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV---QLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTE---EEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEEECC
Confidence 35789999996 89999999999999999999985 5568999999999999999999999999977 99999998
Q ss_pred cccc
Q 023320 279 SKMR 282 (284)
Q Consensus 279 ~~~~ 282 (284)
.+..
T Consensus 86 ~~~~ 89 (97)
T 1x5p_A 86 KQPM 89 (97)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 212
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=121.11 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=71.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEE-EEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-MRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
..++|||+|||.++|+++|+++|+.||.|.+|+ +..+...+.|||+|.+.++|.+|++.|||..|.|+ .|+|+||+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF---TLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEcC
Confidence 478999999999999999999999999999995 66655455699999999999999999999999988 99999998
Q ss_pred ccc
Q 023320 279 SKM 281 (284)
Q Consensus 279 ~~~ 281 (284)
.+.
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 773
No 213
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=117.80 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=69.7
Q ss_pred CCCCCCe-EEEcCCCCcccHHH----HHHHhhcCC-CeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 31 QDNGINT-LFVSGLPDDVRARE----IHNLFRRKP-GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 31 ~~~~~~~-lfV~nLp~~~te~~----L~~~F~~~G-~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
..+|+.| |||+|||+.+++++ |+++|++|| .|.+| . .| +|||+|.+.++|++|++.|+|..+.
T Consensus 4 ~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V--t---gG---~AfV~F~~~esA~~A~~~l~G~~l~--- 72 (96)
T 2diu_A 4 GSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI--T---GC---SAILRFINQDSAERAQKRMENEDVF--- 72 (96)
T ss_dssp SCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC--C---TT---CEEEEESSHHHHHHHHHHHTTCCSS---
T ss_pred CCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE--e---cC---EEEEEECCHHHHHHHHHHhcCCccC---
Confidence 3456877 99999999999998 558999995 99777 2 35 9999999999999999999999999
Q ss_pred CCeEEEEEeecCCCCCc
Q 023320 105 GSVLHIELARSNSRKKR 121 (284)
Q Consensus 105 g~~l~v~~a~~~~~~~~ 121 (284)
||+|+|+|++.+.+...
T Consensus 73 gr~i~v~~A~~~sd~~~ 89 (96)
T 2diu_A 73 GNRIIVSFTPKNRELCE 89 (96)
T ss_dssp SSCCEEESSCCSCCCCC
T ss_pred CceEEEEecCCCcceeE
Confidence 99999999998877543
No 214
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=124.36 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++.++|||+|||.++|+++|+++|++||.|..|.+..+..+. .+||||+|.+.++|++|++.|+|..+. |+.|+|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~---g~~l~V 80 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH---GKAIKV 80 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS---SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC---CEEEEE
Confidence 4567899999999999999999999999999999998543111 129999999999999999999999998 999999
Q ss_pred EEeecCCCC
Q 023320 111 ELARSNSRK 119 (284)
Q Consensus 111 ~~a~~~~~~ 119 (284)
++++.....
T Consensus 81 ~~a~~~~~~ 89 (116)
T 2fy1_A 81 EQAKKPSFQ 89 (116)
T ss_dssp EECCCSSCS
T ss_pred EECCCCCCC
Confidence 999876543
No 215
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.75 E-value=7.3e-19 Score=124.78 Aligned_cols=77 Identities=17% Similarity=0.106 Sum_probs=68.6
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||.++|+++|+++|++||.|..+.++. +.+++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr---~l~v~ 90 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR---KVKLS 90 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc---EEEEE
Confidence 478999999999999999999999999998777665 23467999999999999999999999999988 99999
Q ss_pred Eeec
Q 023320 276 YARS 279 (284)
Q Consensus 276 ~ak~ 279 (284)
++.+
T Consensus 91 ~a~s 94 (95)
T 2ek1_A 91 GPSS 94 (95)
T ss_dssp CCC-
T ss_pred eccC
Confidence 9864
No 216
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-18 Score=127.54 Aligned_cols=78 Identities=17% Similarity=0.322 Sum_probs=71.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..++|||+|||.++|+++|+++|+.||.|..|++.. +.+++||||+|.+.++|.+|+ .|||..|.|+ .|+|+
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l~V~ 99 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGV---PIIVQ 99 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTE---EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCe---EEEEE
Confidence 368999999999999999999999999999999986 345689999999999999999 9999999977 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 997653
No 217
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-18 Score=124.52 Aligned_cols=84 Identities=23% Similarity=0.471 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++++++|+++|+.||.|..|++..+...+. +||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 81 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS---GRALR 81 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS---SSCBE
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CcEEE
Confidence 44569999999999999999999999999999999986643332 29999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.++.....
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999876543
No 218
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=121.81 Aligned_cols=86 Identities=19% Similarity=0.274 Sum_probs=74.9
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhc-CCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCe-eCCCCCCe
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRR-KPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVK-FDPQSGSV 107 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~-~~~~~g~~ 107 (284)
+..++++|||+|||.++|+++|+++|+. ||.|..|++..+..+. ++||||+|.+.++|.+|++.|+|.. +. |+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~---g~~ 81 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG---SKP 81 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS---SSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC---CEe
Confidence 4556899999999999999999999999 9999999998654222 2399999999999999999999999 98 999
Q ss_pred EEEEEeecCCCC
Q 023320 108 LHIELARSNSRK 119 (284)
Q Consensus 108 l~v~~a~~~~~~ 119 (284)
|+|.++......
T Consensus 82 l~v~~a~~~~~~ 93 (104)
T 2dhg_A 82 VRLSVAIPKASR 93 (104)
T ss_dssp CCCCBCCCCCSC
T ss_pred EEEEEccCCCcC
Confidence 999999766544
No 219
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=133.62 Aligned_cols=78 Identities=13% Similarity=0.092 Sum_probs=70.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCC--CceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..++|||+|||.++|+++|+++|+.|| .|.+|+++.+ .++|||||+|.+.++|.+||+.|||..|.|+ .|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr---~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE---KVD 130 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE---ECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe---EeE
Confidence 468999999999999999999999999 9999998763 4567999999999999999999999999988 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|.+|+.+
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999653
No 220
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=122.45 Aligned_cols=84 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+++++|||+|||.++|+++|+++|++||.|..|++..+..+. +.||||+|.+.++|++|++.|+|..+. |+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 87 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF---DRPMH 87 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC---CCEEE
Confidence 35568999999999999999999999999999999998654322 239999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|++++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99986543
No 221
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=121.33 Aligned_cols=82 Identities=18% Similarity=0.157 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.+..++|||+|||.++|+++|+++|++||.|..+.+..+...+ ++||||+|.+.++|++|++.|+|..|. |+.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 88 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC---CeEEE
Confidence 4456899999999999999999999999999777666553333 239999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023320 110 IELARSN 116 (284)
Q Consensus 110 v~~a~~~ 116 (284)
|+++...
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998654
No 222
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=119.00 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=70.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..++|||+|||.++|+++|+++|+.| .|..|+++.+ .+++||||+|.+.++|.+|++ |||..|.++ .|+|.+
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr---~i~v~~ 83 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR---YIEVFR 83 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE---EEEEEE
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc---EEEEEE
Confidence 47899999999999999999999999 9999998874 346799999999999999999 999999988 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
|+.+.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 223
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=119.65 Aligned_cols=80 Identities=24% Similarity=0.471 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCC-CeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNG-VKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g-~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|++||. |..+.+. .++ ||||+|.+.++|++|++.|+| ..+. |+.|+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g---~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~ 76 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSG---YAFVDYPDQNWAIRAIETLSGKVELH---GKIME 76 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETT---EEEECCSCHHHHHHHHHHHTTTCEET---TEECE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCC---EEEEEECCHHHHHHHHHHccCCeeEC---CEEEE
Confidence 446789999999999999999999999999 6655554 366 999999999999999999999 9998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|+|++.+...
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876543
No 224
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=1.2e-17 Score=121.73 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..++++|||+|||.+ +|+++|+++|++||.|..|++. ++ ||||+|.+.++|++|++.|+|..+. |+.|+|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~---~g---~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 94 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH---KG---YAFVQYSNERHARAAVLGENGRVLA---GQTLDI 94 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE---TT---EEEEECSSSHHHHHHHHHHTTCEET---TEECCE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe---CC---EEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 445689999999999 9999999999999999999984 77 9999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
++++....
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99975443
No 225
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=124.37 Aligned_cols=80 Identities=13% Similarity=0.161 Sum_probs=70.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|+.||.|.+|++.. +.+++||||+|.+.++|.+|++.+ |..|.|+ .|+|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~---~l~V 98 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK---TIDP 98 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE---EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE---EEEE
Confidence 4588999999999999999999999999999999987 345789999999999999999987 5899977 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
++++.+..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987654
No 226
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=2.4e-18 Score=116.60 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=65.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
+|||+|||.++|+++|+++|++||.|.+|.+..+ .+++||||+|.+.++|++|++ |||..|.|+ .|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 5899999999999999999999999999998763 456799999999999999998 999999988 9999886
No 227
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=2.8e-18 Score=124.80 Aligned_cols=78 Identities=22% Similarity=0.358 Sum_probs=69.6
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCC-CeeEEEEee-eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKP-GFDFCQLKY-TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~v~~v~~~~-~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
+...+|||+|||+++|+++|+++|++|| .|..+.+.. +.+| ||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rG---faFV~F~~~e~A~~Ai~~lng~~l~---Gr~i~V 99 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDG---TGALEFPSEEILVEALERLNNIEFR---GSVITV 99 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSC---CEEEEESSHHHHHHHHHHTTTEEET---TEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCC---EEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3468999999999999999999999999 899988852 3445 9999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
++++..
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998654
No 228
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=122.78 Aligned_cols=79 Identities=25% Similarity=0.432 Sum_probs=68.1
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+.++|||+|||.++|+++|+++|+.|+ .|.++. +.+++||||+|.+.++|.+||+.|||..|.++ .|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 85 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN---KVT 85 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 34589999999999999999999999885 444443 34467999999999999999999999999987 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+||+.+..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987653
No 229
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.74 E-value=2.9e-18 Score=119.88 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=70.3
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
..++|||+|||.++++++|+++|++| .|.++++. .+++||||+|.+.++|.+|++.|||..+.|+ .|+|+|++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTE---EEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEcCC
Confidence 36899999999999999999999999 99999885 5678999999999999999999999999988 999999976
Q ss_pred cc
Q 023320 280 KM 281 (284)
Q Consensus 280 ~~ 281 (284)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 230
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=3.8e-18 Score=119.46 Aligned_cols=80 Identities=24% Similarity=0.243 Sum_probs=63.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
++..+|||+|||.++|+++|+++|++||.|.+|++..+ ++|||||+|.+.++|. +|+|..+.++ +..|.|.+|+
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQ----SLCGEDLIIK-GISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHH----HHTTCEEEET-TEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHH----HHcCCCcccC-CEEEEEEEcC
Confidence 45889999999999999999999999999999998874 7899999999999998 3677776533 4499999998
Q ss_pred ccccCC
Q 023320 279 SKMRKL 284 (284)
Q Consensus 279 ~~~~~~ 284 (284)
.+..+|
T Consensus 83 ~k~~~~ 88 (89)
T 3d2w_A 83 PKHNKL 88 (89)
T ss_dssp ------
T ss_pred CCCcCC
Confidence 776554
No 231
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.74 E-value=8.9e-18 Score=125.55 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...++++|||+|||.++|+++|+++|+.||.|..|.+..+...+ ++||||+|.+.++|++|++.|+|..|. |+.|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l 94 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM---GQPI 94 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS---SSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC---CeEE
Confidence 35568999999999999999999999999999999998553222 229999999999999999999999998 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
.|+|+......
T Consensus 95 ~v~~a~~~~~~ 105 (126)
T 3ex7_B 95 SVDWCFVRGPP 105 (126)
T ss_dssp EEEESEESSSC
T ss_pred EEEEecCCCCC
Confidence 99999877554
No 232
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=7.6e-18 Score=123.85 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
+++++|||+|||.++|+++|+++|+.||.|..|.+..+.+. .+||||+|.+.++|.+|++.|+|..+. |+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVS---NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSS---SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEEC---CeEEEEEE
Confidence 45789999999999999999999999999999999854332 239999999999999999999999998 99999999
Q ss_pred eecC
Q 023320 113 ARSN 116 (284)
Q Consensus 113 a~~~ 116 (284)
+...
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 8755
No 233
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.74 E-value=4.1e-18 Score=127.03 Aligned_cols=78 Identities=14% Similarity=0.282 Sum_probs=71.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.++|||+|||.++|+++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|+ .|||..|.|+ .|+|+|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l~V~~ 111 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR---TIKVLP 111 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE---ECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe---EEEEEE
Confidence 689999999999999999999999999999998763 44679999999999999999 8999999987 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 112 a~~~~~ 117 (124)
T 2jwn_A 112 KRTNMP 117 (124)
T ss_dssp SSCCCS
T ss_pred CCCCCC
Confidence 987654
No 234
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=7.6e-19 Score=157.64 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=72.8
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||..+|+++|..+|++||.|..|.|+. +.+++||||+|.+.++|.+||+.|||..|.|+ .|.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr---~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGR---RVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCE---EEEEE
Confidence 478999999999999999999999999999999875 34578999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 178 ~a~~~~ 183 (437)
T 3pgw_S 178 VERGRT 183 (437)
T ss_pred EeCCCC
Confidence 998654
No 235
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.1e-18 Score=121.15 Aligned_cols=80 Identities=8% Similarity=0.002 Sum_probs=65.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.+|||+|||+++|+++|+++|++|| .|.+|++..+..+++ +||||+|.+.++|++|++.|||..+. |+.|+|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~---gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS---SCCCEEC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC---CEEEEEE
Confidence 4799999999999999999999999 899999986543332 39999999999999999999999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
++.....
T Consensus 79 ~~~~~~~ 85 (90)
T 3p5t_L 79 PSNKLEH 85 (90)
T ss_dssp CC-----
T ss_pred ECCCCcc
Confidence 9876643
No 236
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=122.80 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....+.++|||+|||.++|+++|+++|++||.|..|++..+...+ +.||||+|.+.++|++|++.+++ .+. |+.
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~---g~~ 87 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID---GRK 87 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET---TEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC---CEE
Confidence 345678999999999999999999999999999999998542222 12999999999999999999998 787 999
Q ss_pred EEEEEeecCC
Q 023320 108 LHIELARSNS 117 (284)
Q Consensus 108 l~v~~a~~~~ 117 (284)
|+|+++....
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999997653
No 237
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=4.1e-18 Score=121.38 Aligned_cols=83 Identities=22% Similarity=0.372 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHH----HHhhcCCCeeEEEEee--eCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIH----NLFRRKPGFDFCQLKY--TGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~v~~v~~~~--~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
++.+++++|||+|||.++++++|+ ++|++||.|..|.+.. ..++ ||||+|.+.++|.+|++.|+|..+.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~-- 77 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRG---QAFVIFKEVSSATNALRSMQGFPFY-- 77 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTT---CEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCc---EEEEEeCCHHHHHHHHHHhCCCEEC--
Confidence 345678999999999999999999 9999999999998872 1344 9999999999999999999999998
Q ss_pred CCCeEEEEEeecCCC
Q 023320 104 SGSVLHIELARSNSR 118 (284)
Q Consensus 104 ~g~~l~v~~a~~~~~ 118 (284)
|+.|+|.|++....
T Consensus 78 -g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 -DKPMRIQYAKTDSD 91 (97)
T ss_dssp -TEECEEEECSSCCT
T ss_pred -CcEEEEEEccCCCc
Confidence 99999999987654
No 238
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.8e-18 Score=130.44 Aligned_cols=81 Identities=21% Similarity=0.322 Sum_probs=71.6
Q ss_pred CCCcCeEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEEe-eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 198 VQPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMRA-RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 198 ~~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~-~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
..++++|||+|||.++|+++|+.+|+.||.|.. +++.. +.+++||||+|.+.++|.+|++.|||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~- 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK- 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc-
Confidence 345889999999999999999999999999876 44333 66788999999999999999999999999987
Q ss_pred CCcEEEEEeeccc
Q 023320 269 RGGMHIEYARSKM 281 (284)
Q Consensus 269 ~~~l~v~~ak~~~ 281 (284)
.|+|+||+.+.
T Consensus 121 --~l~V~~a~~~~ 131 (143)
T 3egn_A 121 --PMVVQFARSAR 131 (143)
T ss_dssp --ECEEEECCCSC
T ss_pred --EEEEEECCCCC
Confidence 99999997654
No 239
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=1.5e-17 Score=116.01 Aligned_cols=79 Identities=19% Similarity=0.348 Sum_probs=68.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+.++|||+|||+++|+++|+++|++||.|..|++..+..++ ++||||+|.+.++|.+|++ +++..+. |+.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i 82 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD---GRVI 82 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET---TEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC---CEEE
Confidence 35668999999999999999999999999999999998654333 2399999999999999996 5788898 9999
Q ss_pred EEEEe
Q 023320 109 HIELA 113 (284)
Q Consensus 109 ~v~~a 113 (284)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 240
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.4e-18 Score=124.50 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=71.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCC-ceEEEEE-e----eCCcCeEEEEeCCHHHHHHHHHHhC--CCccCCCCCCc
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPG-FNMLKMR-A----RGGMPVAFADFEEVEQASIAMEGLQ--DSTLPSSDRGG 271 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~-v~~v~~~-~----~~~~~~afV~f~~~e~A~~A~~~ln--g~~~~~~~~~~ 271 (284)
+.++|||+|||.++|+++|+++|+.||. |..|.+. . +.+++||||+|.+.++|.+|++.|| +..+.++ .
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~---~ 83 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGH---Q 83 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTB---C
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCC---e
Confidence 4789999999999999999999999998 9999987 3 2567899999999999999999996 5899977 9
Q ss_pred EEEEEeeccc
Q 023320 272 MHIEYARSKM 281 (284)
Q Consensus 272 l~v~~ak~~~ 281 (284)
|+|+||+.+.
T Consensus 84 l~V~~a~~~~ 93 (109)
T 2dis_A 84 IAVDWAEPEI 93 (109)
T ss_dssp CEEEESCSSC
T ss_pred EEEEEcCCCC
Confidence 9999998664
No 241
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=120.66 Aligned_cols=83 Identities=22% Similarity=0.343 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC-C--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-N--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~-~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.+.++|||+|||+++|+++|+++|+.|| |..|++..+... + ++||||+|.+.++|++|+ .|+|..+. |+.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 87 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---NKRIR 87 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET---TEECE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC---CcEEE
Confidence 4569999999999999999999999999 999998855322 1 229999999999999999 99999998 99999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|+++.......
T Consensus 88 V~~a~~~~~~~ 98 (104)
T 1wi8_A 88 VDVADQAQDKD 98 (104)
T ss_dssp EEECCCCCCCC
T ss_pred EEEccCCCCCC
Confidence 99998765543
No 242
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.7e-17 Score=117.72 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=73.3
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....+.++|||+|||.++|+++|+++|++||.|..|++..+...+. +||||+|.+.++|.+|+. ++..+. |+.
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~---g~~ 84 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMID---GRW 84 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEET---TEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeC---CeE
Confidence 3456679999999999999999999999999999999986543232 399999999999999998 477887 999
Q ss_pred EEEEEeecCCCCC
Q 023320 108 LHIELARSNSRKK 120 (284)
Q Consensus 108 l~v~~a~~~~~~~ 120 (284)
|.|.++..+....
T Consensus 85 l~v~~a~~~~~~~ 97 (103)
T 2cqg_A 85 CDCKLPNSKQSQD 97 (103)
T ss_dssp EEEECCCTTCCCC
T ss_pred EEEEecCCCCcCC
Confidence 9999998775543
No 243
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=9.2e-19 Score=122.98 Aligned_cols=77 Identities=17% Similarity=0.268 Sum_probs=67.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
++|||+|||.++++++|+++|++||.|.+|.+.. +.+++||||+|.+.+ |.+|++.|||..+.|+ .|+|+||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR---TIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS---SCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe---EEEEEEc
Confidence 5899999999999999999999999999999876 345789999999999 9999999999999988 9999999
Q ss_pred ecccc
Q 023320 278 RSKMR 282 (284)
Q Consensus 278 k~~~~ 282 (284)
..+..
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 87643
No 244
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=124.58 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=72.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|++||.|..|++..+ .+++||||+|.+.++|.+||+. ||..|.++ .|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~---~l~V 89 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR---NIDP 89 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE---EEBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE---EEEE
Confidence 45889999999999999999999999999999998874 3457999999999999999999 99999988 9999
Q ss_pred EEeecccc
Q 023320 275 EYARSKMR 282 (284)
Q Consensus 275 ~~ak~~~~ 282 (284)
+|++.+..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99987653
No 245
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=6.9e-17 Score=119.38 Aligned_cols=79 Identities=18% Similarity=0.136 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeE-EEEEecCHHHHHHHHHHhCCCeeCCCCC--CeEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVV-AFATFVNHQTAVAALHELNGVKFDPQSG--SVLHIE 111 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~-aFV~F~~~~~A~~A~~~l~g~~~~~~~g--~~l~v~ 111 (284)
...|||+||++.+|+++|+++|++||.|.+|++.. ..+ | |||+|.+.++|..|++.|||..|. | +.|+|+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~~G---f~aFVef~~~~~A~~A~~~LnG~~i~---g~~~~l~V~ 97 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-RNG---IQAMVEFESVLCAQKAKAALNGADIY---AGCCTLKIE 97 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-SSS---EEEEEEESSHHHHHHHHHHHTTCCCB---TTBSEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCC---CEEEEEECCHHHHHHHHHHhCCCEec---CCCeEEEEE
Confidence 35578999999999999999999999999999863 333 6 999999999999999999999997 6 689999
Q ss_pred EeecCCCCC
Q 023320 112 LARSNSRKK 120 (284)
Q Consensus 112 ~a~~~~~~~ 120 (284)
|++......
T Consensus 98 ~Ak~~~l~v 106 (124)
T 2e5i_A 98 YARPTRLNV 106 (124)
T ss_dssp CCSCSCCCC
T ss_pred EecCCccee
Confidence 998776433
No 246
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.4e-18 Score=123.45 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHH---HHhhcCCCeeEEEEeeeCC-----CCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIH---NLFRRKPGFDFCQLKYTGR-----GNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~---~~F~~~G~v~~v~~~~~~~-----~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
..+.++|||+|||+++++++|+ ++|++||.|..|++..+.. ...+||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3456899999999999999999 9999999999999974322 11249999999999999999999999998
Q ss_pred CCCeEEEEEeecCCC
Q 023320 104 SGSVLHIELARSNSR 118 (284)
Q Consensus 104 ~g~~l~v~~a~~~~~ 118 (284)
|+.|+|+|++.+..
T Consensus 90 -gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 90 -GRTLKASLGTTKYC 103 (111)
T ss_dssp -TEEEEEESCCCCSC
T ss_pred -CEEEEEEecccccc
Confidence 99999999987753
No 247
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.74 E-value=9.4e-18 Score=127.68 Aligned_cols=76 Identities=17% Similarity=0.325 Sum_probs=69.9
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|++||.|..|++.. +.+++||||+|.+.++|.+|++.|||..|.|+ .|+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v 137 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---TIRV 137 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE---EEEE
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE---EEEE
Confidence 4589999999999999999999999999999999876 34578999999999999999999999999988 9999
Q ss_pred EEe
Q 023320 275 EYA 277 (284)
Q Consensus 275 ~~a 277 (284)
+||
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 986
No 248
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=3.8e-18 Score=116.14 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=66.7
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
++|||+|||.++|+++|+++|++||.|..+.+..+ .+++||||+|.+.++|.+|++.++ ..+.|+ .|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEec
Confidence 47999999999999999999999999999998763 447899999999999999999999 999988 9999987
No 249
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=8.4e-18 Score=117.24 Aligned_cols=75 Identities=11% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|++||.|.+|++..+ .+++||||+|.+.++|.+|++ ++|..|.|+ .|+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---~i~v 84 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR---VIDP 84 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE---EEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE---EEEE
Confidence 45889999999999999999999999999999999863 346799999999999999996 478889977 9999
Q ss_pred EEe
Q 023320 275 EYA 277 (284)
Q Consensus 275 ~~a 277 (284)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 250
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.5e-18 Score=121.27 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++..+...+. +||||+|.+.++|++|++. ++..|. |+.|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~---g~~l 87 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD---GRNI 87 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET---TEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC---CEEE
Confidence 356679999999999999999999999999999999986533222 3999999999999999998 999998 9999
Q ss_pred EEEEeecCCCC
Q 023320 109 HIELARSNSRK 119 (284)
Q Consensus 109 ~v~~a~~~~~~ 119 (284)
+|.++..+...
T Consensus 88 ~V~~a~~~~~~ 98 (105)
T 2dh8_A 88 DPKPCTPRGMQ 98 (105)
T ss_dssp BCCCSCCSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876544
No 251
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.74 E-value=4.1e-18 Score=120.85 Aligned_cols=81 Identities=19% Similarity=0.142 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++.++|||+|||+++|+++|+++|++||.|..+.+..+...+. .||||+|.+.++|++|++.|+|..+. |+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~---gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG---SRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC---CcEEE
Confidence 34468999999999999999999999999998777775544332 39999999999999999999999998 99999
Q ss_pred EEEeec
Q 023320 110 IELARS 115 (284)
Q Consensus 110 v~~a~~ 115 (284)
|+++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998753
No 252
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.74 E-value=5.9e-18 Score=137.10 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=72.1
Q ss_pred CCcCeEEEeCCC-CCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 199 QPCSTLFIANLG-PNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 199 ~~~~~L~v~nL~-~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
+++++|||+||+ .++|+++|+++|++||.|.+|+++.+ .++||||+|.+.++|++|++.|||..|.|+ .|+|.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCc---eEEEEEc
Confidence 357899999999 89999999999999999999999864 468999999999999999999999999988 9999999
Q ss_pred ecc
Q 023320 278 RSK 280 (284)
Q Consensus 278 k~~ 280 (284)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 753
No 253
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1.5e-17 Score=128.03 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
.+...+|||+||++.+|+++|+++|++||.|.+|.+..+ + .+.||||+|.+.++|++|++.|||..|. +.|+.|+|+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~-~rgfAFVeF~d~~~A~~Ai~~LnG~~i~-g~g~~L~V~ 119 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-N-NQFQALLQYADPVSAQHAKLSLDGQNIY-NACCTLRID 119 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-S-SCEEEEEEESCHHHHHHHHHHSTTBCSS-SSCSCEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C-CCCEEEEEECCHHHHHHHHHHhCCCEec-CCCcEEEEE
Confidence 445578999999999999999999999999999988632 2 2339999999999999999999999995 114999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
|++.....
T Consensus 120 ~Ak~~~l~ 127 (164)
T 1sjr_A 120 FSKLTSLN 127 (164)
T ss_dssp ECSSSSCC
T ss_pred EecCCccc
Confidence 99877543
No 254
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=1.1e-17 Score=117.13 Aligned_cols=79 Identities=15% Similarity=0.266 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
.++|||+|||.++|+++|+++|++||.|..+++..+...+ ++||||+|.+.++|++|+ .++|..+. |+.|+|++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~---g~~l~V~~ 81 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR---GRQIKVIP 81 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET---TEECEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC---CcEEEEEE
Confidence 5899999999999999999999999999999998653222 339999999999999999 99999998 99999999
Q ss_pred eecCC
Q 023320 113 ARSNS 117 (284)
Q Consensus 113 a~~~~ 117 (284)
++...
T Consensus 82 a~~~~ 86 (89)
T 3ucg_A 82 KRTNR 86 (89)
T ss_dssp TTTTS
T ss_pred ccCCC
Confidence 87653
No 255
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.4e-18 Score=122.66 Aligned_cols=81 Identities=17% Similarity=0.241 Sum_probs=70.0
Q ss_pred CCCCCeEEE--cCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee-C-CCCCCe
Q 023320 32 DNGINTLFV--SGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF-D-PQSGSV 107 (284)
Q Consensus 32 ~~~~~~lfV--~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~-~-~~~g~~ 107 (284)
..++++||| +||++++|+++|+++|++||.|..|.+. .+|+ ||||+|.+.++|++|++.|||..+ . .+.|++
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~-~~rg---faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKP---YSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECC-TTCS---CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 456899999 7799999999999999999999988876 4566 999999999999999999999988 1 112889
Q ss_pred EEEEEeecC
Q 023320 108 LHIELARSN 116 (284)
Q Consensus 108 l~v~~a~~~ 116 (284)
|.|.|++..
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999998744
No 256
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.6e-17 Score=115.01 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=71.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.....++|||+|||+++|+++|+++|+.| .|..|++..+..+. ++||||+|.+.++|.+|++ ++|..+. |+.|+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~---gr~i~ 80 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG---GRYIE 80 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET---TEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC---CcEEE
Confidence 34567999999999999999999999999 89999998663222 2399999999999999999 9999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.+++...
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99997663
No 257
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.5e-18 Score=124.44 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=72.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+.++|||+|||..+|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+||+. ||..|.++ .|+|+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~V~ 101 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR---VVEPK 101 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE---EEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE---EEEEE
Confidence 3689999999999999999999999999999999873 4568999999999999999998 99999988 99999
Q ss_pred Eeecccc
Q 023320 276 YARSKMR 282 (284)
Q Consensus 276 ~ak~~~~ 282 (284)
|++.+..
T Consensus 102 ~a~~~~~ 108 (116)
T 1x4b_A 102 RAVAREE 108 (116)
T ss_dssp CCSSCCC
T ss_pred ECCCCcc
Confidence 9987643
No 258
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=127.28 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=73.6
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeE--EEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCC----ee
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--CQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGV----KF 100 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~----~~ 100 (284)
.....++++|||+|||+++|+++|+++|++||.|.. |+|..+...++ +||||+|.+. +|.+|+..|+|. .+
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 344677899999999999999999999999999966 88885542222 2999999999 999999999999 88
Q ss_pred CCCCCCeEEEEEeecCCC
Q 023320 101 DPQSGSVLHIELARSNSR 118 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~~~~ 118 (284)
. |+.|+|.+++....
T Consensus 96 ~---gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 96 D---GKTINVEFAKGSKR 110 (131)
T ss_dssp G---GCCCCCEECCCSCC
T ss_pred C---CEEEEEEECCCCCC
Confidence 8 99999999976543
No 259
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=1.2e-17 Score=128.62 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=73.7
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...+.++|||+|||.++|+++|+++|++||.|..|++..+.++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 142 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPG---FAFVEFEDPRDAADAVRELDGRTLC---GCRVRV 142 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCS---EEEEEESSHHHHHHHHHHHSSSCSS---SSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCc---EEEEEECCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 3566799999999999999999999999999999999855566 9999999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.|++..
T Consensus 143 ~~a~~~ 148 (150)
T 2i2y_A 143 ELSNGE 148 (150)
T ss_dssp EECCCC
T ss_pred EEcCCC
Confidence 998765
No 260
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=117.15 Aligned_cols=79 Identities=23% Similarity=0.397 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee-CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+..++|||+|||.++|+++|+++|++||.|. +.+... .++ ||||+|.+.++|++|++.|||..+. |+.|+|
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~V 88 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRR---RAFLHYPDSAAAQQAVSCLQGLRLG---TDTLRV 88 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTT---EEEEECSSHHHHHHHHHHHTTCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCc---EEEEEECCHHHHHHHHHHhCCCEEC---CcEEEE
Confidence 45578999999999999999999999999996 555532 344 9999999999999999999999998 999999
Q ss_pred EEeecCC
Q 023320 111 ELARSNS 117 (284)
Q Consensus 111 ~~a~~~~ 117 (284)
.+++.+.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997653
No 261
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=117.73 Aligned_cols=72 Identities=10% Similarity=0.082 Sum_probs=63.2
Q ss_pred cCeEEEeCCCCCC------CHHHHHHHhccCCCceEEEEEe--eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 201 CSTLFIANLGPNC------TEDELKQTLSVYPGFNMLKMRA--RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 201 ~~~L~v~nL~~~~------t~~~L~~~F~~~G~v~~v~~~~--~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
+++|||+|||..+ |+++|+++|++||.|.+|.+.+ +.+++||||+|.+.++|.+|++.|||..|.|+ ++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~--~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ--HTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS--SCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc--eeE
Confidence 3689999999999 7799999999999999999875 34578999999999999999999999999843 356
Q ss_pred EE
Q 023320 273 HI 274 (284)
Q Consensus 273 ~v 274 (284)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 54
No 262
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.2e-18 Score=123.79 Aligned_cols=79 Identities=27% Similarity=0.318 Sum_probs=69.3
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEE---eeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMR---ARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~---~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
+.++|||+|||.++|+++|+++|+.||.|..+.+. .+.+++||||+|.+.++|.+|++ |||..|.++ .|+|+|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~---~l~V~~ 91 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGN---EIKLEK 91 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTB---CCEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCc---EEEEEE
Confidence 47899999999999999999999999988762222 25678899999999999999999 999999988 999999
Q ss_pred eecccc
Q 023320 277 ARSKMR 282 (284)
Q Consensus 277 ak~~~~ 282 (284)
++.+..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 987654
No 263
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.4e-17 Score=115.52 Aligned_cols=79 Identities=25% Similarity=0.327 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..++++|||+|| ++|+++|+++|++||.|..|.+. ..++ ||||+|.+.++|.+|+..|+|..+. |+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRN---CAFVTYEKMESADQAVAELNGTQVE---SVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTT---EEEEEESSHHHHHHHHHHTTTEEET---TEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCC---EEEEEECCHHHHHHHHHHhCCCeEC---CeEEEEE
Confidence 456799999996 89999999999999999999885 5566 9999999999999999999999998 9999999
Q ss_pred EeecCCCC
Q 023320 112 LARSNSRK 119 (284)
Q Consensus 112 ~a~~~~~~ 119 (284)
|++.....
T Consensus 83 ~a~~~~~~ 90 (97)
T 1x5p_A 83 IARKQPML 90 (97)
T ss_dssp CCSSCCCC
T ss_pred ECCCCCCC
Confidence 99776543
No 264
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.5e-16 Score=118.46 Aligned_cols=85 Identities=25% Similarity=0.307 Sum_probs=74.2
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...++++|||+|||.++++++|+++|++||.|..|++..+..+. ++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 107 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMD 107 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS---SCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC---CcEEE
Confidence 45677999999999999999999999999999999998543111 229999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|+++.....
T Consensus 108 V~~a~~~~~ 116 (124)
T 2kt5_A 108 IQLVASQID 116 (124)
T ss_dssp EEEECCTTC
T ss_pred EEEeCCCCC
Confidence 999976543
No 265
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=116.73 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=70.9
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEE-EeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQ-LKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~-~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.....++|||+|||+++|+++|+++|++||.|..|+ +..+ +..+ .|||+|.+.++|.+|+..|+|..+. |+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~-~~~~-~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~ 85 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTD-SETA-VVNVTYSSKDQARQALDKLNGFQLE---NFTLK 85 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCS-SSSE-EEEEEESSHHHHHHHHHHHTTCBCS---SCBCE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecC-CCCC-EEEEEECCHHHHHHHHHHhCCCEEC---CcEEE
Confidence 345578999999999999999999999999999995 5533 3322 4999999999999999999999998 99999
Q ss_pred EEEeecC
Q 023320 110 IELARSN 116 (284)
Q Consensus 110 v~~a~~~ 116 (284)
|.++...
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999776
No 266
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=120.11 Aligned_cols=81 Identities=19% Similarity=0.242 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..+.++|||+|||+++|+++|+++|++||.|.+|.+..+..+. ++||||+|.+.++|.+|+. ++|..+. |+.|.|
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~---gr~l~V 83 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK---ETDLLI 83 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT---TTTCEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC---CEEEEE
Confidence 4457999999999999999999999999999999998543211 2299999999999999998 8999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.++...
T Consensus 84 ~~~~~~ 89 (103)
T 1s79_A 84 LFKDDY 89 (103)
T ss_dssp EEHHHH
T ss_pred EEchHH
Confidence 998754
No 267
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.73 E-value=1.1e-17 Score=124.75 Aligned_cols=84 Identities=13% Similarity=0.221 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|++||.|..|++..+...+ ++||||+|.+.++|.+|+ .|+|..|. |+.|+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~---g~~l~ 108 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR---GRTIK 108 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET---TEECE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC---CeEEE
Confidence 3346999999999999999999999999999999998653222 339999999999999999 79999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.+++.....
T Consensus 109 V~~a~~~~~~ 118 (124)
T 2jwn_A 109 VLPKRTNMPG 118 (124)
T ss_dssp EEESSCCCSS
T ss_pred EEECCCCCCC
Confidence 9999765443
No 268
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.72 E-value=2.5e-17 Score=122.00 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=69.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
.+.++|||+|| ++|+++|+++|++||.|.+|.+. .+++||||+|.+.++|.+|++.|||..|.|+ .|+|+|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESV---QLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCe---EEEEEEeC
Confidence 45889999996 69999999999999999999986 5568999999999999999999999999988 99999998
Q ss_pred ccc
Q 023320 279 SKM 281 (284)
Q Consensus 279 ~~~ 281 (284)
.+.
T Consensus 110 ~~~ 112 (121)
T 2bz2_A 110 KQP 112 (121)
T ss_dssp SSC
T ss_pred CCC
Confidence 764
No 269
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.3e-17 Score=118.85 Aligned_cols=78 Identities=23% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||..+|+++|+++|+.||.|..|++..+ .+++||||+|.+.++|.+|++ ++..|.|+ .|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~---~l~v 87 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR---WCDC 87 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE---EEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe---EEEE
Confidence 45789999999999999999999999999999998874 346799999999999999999 47789877 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
.|++.+.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998764
No 270
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-18 Score=119.74 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++++|||+|||.++++++|+++|++||.|..|++..+..++ ++||||+|.+.++|.+|++.|||..+. |+.+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ---AQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC---EESCCS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe---eEEEee
Confidence 468999999999999999999999999999999988543222 229999999999999999999999998 888877
Q ss_pred EEee
Q 023320 111 ELAR 114 (284)
Q Consensus 111 ~~a~ 114 (284)
.+..
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 6653
No 271
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=118.48 Aligned_cols=78 Identities=10% Similarity=0.199 Sum_probs=68.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
..++|||+|||.++|+++|+++|+.||.|.+|.+....++ ||||+|.+.++|.+|++ |||..|.|+ .|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEECCc
Confidence 3679999999999999999999999999999833223333 99999999999999999 999999988 999999876
Q ss_pred ccc
Q 023320 280 KMR 282 (284)
Q Consensus 280 ~~~ 282 (284)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 272
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.2e-17 Score=122.81 Aligned_cols=74 Identities=12% Similarity=0.216 Sum_probs=66.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCc-----EEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGG-----MHIE 275 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~-----l~v~ 275 (284)
..+|||+|||.++|+++|+++|++||.|..|.+..+ +||||+|.+.++|++||+.|||..|.++ . |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEEEec
Confidence 689999999999999999999999999999998766 8999999999999999999999999987 7 7777
Q ss_pred Eeecc
Q 023320 276 YARSK 280 (284)
Q Consensus 276 ~ak~~ 280 (284)
.++.+
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 76543
No 273
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-18 Score=124.98 Aligned_cols=77 Identities=6% Similarity=0.027 Sum_probs=67.8
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEE-EEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLK-MRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~-~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
...+|||+|||+++|+++|+++|+.||.|..+. +.. +.+++||||+|.+.++|.+||+ |||..|.++ .|+|.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr---~i~V~ 99 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR---FIQVH 99 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS---CBEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc---EEEEE
Confidence 468999999999999999999999999987743 332 3456799999999999999999 999999988 99999
Q ss_pred Eeecc
Q 023320 276 YARSK 280 (284)
Q Consensus 276 ~ak~~ 280 (284)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 274
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=5.1e-17 Score=126.02 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++.++|||+|||.++|+++|+++|++||.|..|+|..+..++. .||||+|.+.++|++|++.|+|..|. |+.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 112 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD---DRIIR 112 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 45679999999999999999999999999999999986543332 39999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|+|++....
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999986544
No 275
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1e-17 Score=123.01 Aligned_cols=79 Identities=15% Similarity=0.112 Sum_probs=71.2
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGF-NMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v-~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.+.++|||+|||.++|+++|+++|+.||.| ..|+++. +.+++||||+|.+.++|.+||+. ||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr---~i~v 88 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGR---EAFV 88 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE---EEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCe---EEEE
Confidence 347899999999999999999999999999 8888876 44678999999999999999997 99999988 9999
Q ss_pred EEeeccc
Q 023320 275 EYARSKM 281 (284)
Q Consensus 275 ~~ak~~~ 281 (284)
.+++.+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997653
No 276
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.2e-17 Score=119.81 Aligned_cols=84 Identities=31% Similarity=0.442 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCe----eEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGF----DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v----~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
.+++++|||+|||.++|+++|+++|+.||.| ..+++. ..+ .++||||+|.+.++|.+|++.|+|..+. |+.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~---g~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGR-MRGQAFITFPNKEIAWQALHLVNGYKLY---GKI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSS-SCSEEEEECSSHHHHHHHHHHSTTCBCS---SCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCc-cceEEEEEECCHHHHHHHHHHhCCCEeC---CcE
Confidence 5568999999999999999999999999998 444444 211 1229999999999999999999999998 999
Q ss_pred EEEEEeecCCCCC
Q 023320 108 LHIELARSNSRKK 120 (284)
Q Consensus 108 l~v~~a~~~~~~~ 120 (284)
|+|.|++......
T Consensus 97 l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 97 LVIEFGKNKKQRS 109 (115)
T ss_dssp CEEEECCCCSCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998775543
No 277
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=119.30 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=70.1
Q ss_pred CCCCCeEEEcCCCCcc------cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 32 DNGINTLFVSGLPDDV------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~------te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
....++|||+|||+.+ |+++|+++|++||.|..|.+.......++||||+|.+.++|.+|+..|+|..+. |
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~---g 88 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---K 88 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS---T
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC---C
Confidence 4457899999999999 889999999999999999887211111229999999999999999999999998 9
Q ss_pred C-eEEEEEeecC
Q 023320 106 S-VLHIELARSN 116 (284)
Q Consensus 106 ~-~l~v~~a~~~ 116 (284)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998654
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-17 Score=115.87 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
....++|||+|||.++|+++|+++|+.||.|..| ..+...+. ||||+|.+.++|.+|++ |+|..+. |+.|+|.
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~---g~~l~V~ 77 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLG---GHRLRVR 77 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEET---TEECCCB
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEEC---CEEEEEE
Confidence 3457899999999999999999999999999987 33433334 99999999999999999 9999998 9999999
Q ss_pred EeecCCC
Q 023320 112 LARSNSR 118 (284)
Q Consensus 112 ~a~~~~~ 118 (284)
++.....
T Consensus 78 ~a~~~~~ 84 (94)
T 2e5g_A 78 PREQKEF 84 (94)
T ss_dssp CSCCSCC
T ss_pred ECCcCCC
Confidence 8765543
No 279
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=123.11 Aligned_cols=77 Identities=10% Similarity=0.116 Sum_probs=69.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..++|||+|||+++|+++|+++|+.||. |..|++.. +++++||||+|.+.++|.+||+ |||..|.++ .|+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr---~i~ 91 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR---YIE 91 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE---EEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe---EEE
Confidence 4789999999999999999999999998 88999876 3446799999999999999999 999999988 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|.++..+
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998643
No 280
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.7e-17 Score=116.58 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=70.4
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~-v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
+......+|||+|||+++|+++|+++|+.||.|.. |++..+..++ ++||||+|.+.++|++|++. ++..+. |+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~---gr~ 85 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG---HRY 85 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS---SSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC---CcE
Confidence 33456799999999999999999999999999976 7776542222 12999999999999999997 999998 999
Q ss_pred EEEEEeecCC
Q 023320 108 LHIELARSNS 117 (284)
Q Consensus 108 l~v~~a~~~~ 117 (284)
|.|.++....
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9999886543
No 281
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=117.61 Aligned_cols=77 Identities=16% Similarity=0.140 Sum_probs=69.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceE-EEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
...+|||+|||+++|+++|+++|+.||.|.. |.+.. +.+++||||+|.+.++|.+||+. ||..|.++ .|+|.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr---~i~v~ 89 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR---YIEIF 89 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS---CCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc---EEEEE
Confidence 4789999999999999999999999999987 77764 45578999999999999999998 99999988 99999
Q ss_pred Eeecc
Q 023320 276 YARSK 280 (284)
Q Consensus 276 ~ak~~ 280 (284)
++..+
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 98654
No 282
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=3.7e-17 Score=114.25 Aligned_cols=77 Identities=25% Similarity=0.548 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
...++|||+|||.++++++|+++|++| .|..+++. ..++ ||||+|.+.++|++|++.|+|..+. |+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g---~afV~f~~~~~a~~Ai~~l~g~~~~---g~~l~V~~ 74 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKR---TAFVTLLNGEQAQNAIQMFHQYSFR---GKDLIVQL 74 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGT---EEEECCSCHHHHHHHHHHHTTEEET---TEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCc---EEEEEECCHHHHHHHHHHhCCCeEC---CcEEEEEE
Confidence 356899999999999999999999999 99888885 5566 9999999999999999999999998 99999999
Q ss_pred eecCC
Q 023320 113 ARSNS 117 (284)
Q Consensus 113 a~~~~ 117 (284)
+....
T Consensus 75 a~~~~ 79 (88)
T 1wg1_A 75 QPTDA 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 86654
No 283
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=116.82 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..+.++|||+|||.++|+++|+++|++||.| ++..+..+. +.||||+|.+.++|++|++.|+|..+. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~v 85 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE---GRAIRL 85 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC---CeEEEE
Confidence 4568999999999999999999999999987 344221111 229999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
+|++....
T Consensus 86 ~~a~~~~~ 93 (101)
T 2fc9_A 86 ELQGPRGS 93 (101)
T ss_dssp EECSSCCC
T ss_pred EEcCCCCC
Confidence 99977644
No 284
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=117.71 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=67.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..++|||+|||+++|+++|+++|+.||. .+|+++.+ ++++||||+|.+.++|++|| .+|+..|.++ .|+|.+
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V~~ 88 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHR---YVELFL 88 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSS---CCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCc---EEEEEE
Confidence 4789999999999999999999999995 48888763 44679999999999999999 4799999988 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
+..+.
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 285
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.71 E-value=1e-17 Score=126.67 Aligned_cols=85 Identities=19% Similarity=0.309 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+.++|||+|||.++|+++|+++|+.||.|..|++..+..++ ++||||+|.+.++|++|++.|+|..+. |+.|
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~---g~~l 119 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GREL 119 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS---SSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC---CEEE
Confidence 35567999999999999999999999999999999988542222 229999999999999999999999998 9999
Q ss_pred EEEEeecCCC
Q 023320 109 HIELARSNSR 118 (284)
Q Consensus 109 ~v~~a~~~~~ 118 (284)
+|.|++....
T Consensus 120 ~V~~a~~~~~ 129 (135)
T 2lea_A 120 RVQMARYGRP 129 (135)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCCC
Confidence 9999987644
No 286
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=9.7e-17 Score=122.02 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
....+.++|||+|||..+|+++|+++|++||.|..+++..+..++ ++||||+|.+.++|++|++.|+|..+. |+.
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~ 134 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF---GRT 134 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET---TEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC---CEE
Confidence 345678999999999999999999999999999999987542221 229999999999999999999999998 999
Q ss_pred EEEEEe
Q 023320 108 LHIELA 113 (284)
Q Consensus 108 l~v~~a 113 (284)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 287
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-16 Score=115.36 Aligned_cols=87 Identities=18% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCC-----C
Q 023320 30 QQDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDP-----Q 103 (284)
Q Consensus 30 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~-----~ 103 (284)
....+.++|||+|||.++|+++|+++|+.||.|..|++..+..+. .+||||+|.+.++|.+|++.|||..+.. .
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 345567999999999999999999999999999999998654222 2399999999999999999999999931 0
Q ss_pred CCCeEEEEEeecC
Q 023320 104 SGSVLHIELARSN 116 (284)
Q Consensus 104 ~g~~l~v~~a~~~ 116 (284)
.+++|.|.|+...
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 2788999998744
No 288
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=4.3e-17 Score=120.32 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
.....++|||+|||+++|+++|+++|+.||. |..|++..+..++ .+||||+|.+.++|++|++ ++|..|. |+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---HR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---TE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---Ce
Confidence 3456799999999999999999999999999 8899988654433 2399999999999999999 9999998 99
Q ss_pred eEEEEEeecC
Q 023320 107 VLHIELARSN 116 (284)
Q Consensus 107 ~l~v~~a~~~ 116 (284)
.|+|.++...
T Consensus 89 ~i~V~~a~~~ 98 (118)
T 2db1_A 89 YIEVFKSHRT 98 (118)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEECCHH
Confidence 9999998544
No 289
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.71 E-value=4.5e-17 Score=128.72 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=73.7
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.++++|||+|||..+++++|+++|+.||.|..|.+.. +.+++||||+|.+.++|.+|++.|||..|.++ .|+|+
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr---~l~V~ 162 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR---PMDIQ 162 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS---BCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 4578999999999999999999999999999999987 44578999999999999999999999999988 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
||....
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997654
No 290
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.71 E-value=1.4e-17 Score=125.63 Aligned_cols=77 Identities=9% Similarity=0.085 Sum_probs=69.8
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..++|||+|||+++|+++|+++|+.||. |.+|++.. +++++||||+|.+.++|.+||+ |||..|.++ .|+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr---~i~ 118 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR---YIE 118 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS---EEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE---EEE
Confidence 4789999999999999999999999999 88898876 3456799999999999999999 999999988 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998654
No 291
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=6.3e-17 Score=126.66 Aligned_cols=85 Identities=21% Similarity=0.303 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..++++|||+|||..+|+++|+++|+.||.|..|.+..+..++ .+||||+|.+.++|.+||..|+|..|. |+.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~---g~~l~ 145 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM---GQTIQ 145 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 5567899999999999999999999999999999998653332 239999999999999999999999998 99999
Q ss_pred EEEeecCCCC
Q 023320 110 IELARSNSRK 119 (284)
Q Consensus 110 v~~a~~~~~~ 119 (284)
|.|+......
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999877554
No 292
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=121.08 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|++..+..++ .+||||+|.+.++|.+|++. +|..|. |+.|+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~ 99 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID---GRVVE 99 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET---TEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC---CEEEE
Confidence 4456999999999999999999999999999999998543222 22999999999999999998 999998 99999
Q ss_pred EEEeecCCCCC
Q 023320 110 IELARSNSRKK 120 (284)
Q Consensus 110 v~~a~~~~~~~ 120 (284)
|.++..+....
T Consensus 100 V~~a~~~~~~~ 110 (116)
T 1x4b_A 100 PKRAVAREESG 110 (116)
T ss_dssp EECCSSCCCCC
T ss_pred EEECCCCccCC
Confidence 99998775543
No 293
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=114.45 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCeEEEcCCCCcc------cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC-e
Q 023320 35 INTLFVSGLPDDV------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS-V 107 (284)
Q Consensus 35 ~~~lfV~nLp~~~------te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~-~ 107 (284)
+++|||+|||..+ |+++|+++|++||.|..|.+.......++||||+|.+.++|.+|++.|||..+. |+ .
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD---KQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS---SSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC---Ccee
Confidence 4789999999999 789999999999999999887221111229999999999999999999999998 98 7
Q ss_pred EEE
Q 023320 108 LHI 110 (284)
Q Consensus 108 l~v 110 (284)
|+|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 294
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-17 Score=121.55 Aligned_cols=81 Identities=14% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+..+|||+|||+++|+++|+++|+.||.|..+.++.+...+ ++||||+|.+.++|++||+ ++|..|. |+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG---NRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST---TSCBE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEE
Confidence 4556899999999999999999999999999774444343333 2399999999999999999 9999998 99999
Q ss_pred EEEeecC
Q 023320 110 IELARSN 116 (284)
Q Consensus 110 v~~a~~~ 116 (284)
|.++...
T Consensus 98 V~~a~~~ 104 (124)
T 1wel_A 98 VHPITKK 104 (124)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 295
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=120.66 Aligned_cols=78 Identities=12% Similarity=0.030 Sum_probs=70.4
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCC---ceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPG---FNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~---v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
....+|||+|||+++|+++|+++|+.||. |..|++.. +.++|||||+|.+.++|.+||+ |||..|+++ .|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr---~i 84 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQR---YV 84 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSS---CC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCe---EE
Confidence 34789999999999999999999999887 89999876 4567899999999999999999 999999988 99
Q ss_pred EEEEeecc
Q 023320 273 HIEYARSK 280 (284)
Q Consensus 273 ~v~~ak~~ 280 (284)
+|.++..+
T Consensus 85 ~V~~a~~~ 92 (107)
T 2lmi_A 85 EVYEINNE 92 (107)
T ss_dssp CCEECCHH
T ss_pred EEEECCHH
Confidence 99998754
No 296
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.4e-17 Score=112.71 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=64.7
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+|||+|||.++|+++|+++|++||.|..|++..+..++ ++||||+|.+.++|++|++ ++|..+. |+.|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~---g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN---NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS---SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC---CEEEEEEeC
Confidence 59999999999999999999999999999888543222 2399999999999999998 9999998 999999875
No 297
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.7e-17 Score=118.95 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCC-eeEEEEe-eeCC--CCeeEEEEEecCHHHHHHHHHHhC--CCeeCCCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPG-FDFCQLK-YTGR--GNQVVAFATFVNHQTAVAALHELN--GVKFDPQSG 105 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-v~~v~~~-~~~~--~~~~~aFV~F~~~~~A~~A~~~l~--g~~~~~~~g 105 (284)
..+.++|||+|||.++|+++|+++|+.||. |..|.+. .+.. ..++||||+|.+.++|.+|++.|+ +..+. |
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~---g 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW---G 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT---T
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec---C
Confidence 456899999999999999999999999998 9999887 2221 112299999999999999999996 58898 9
Q ss_pred CeEEEEEeecCCC
Q 023320 106 SVLHIELARSNSR 118 (284)
Q Consensus 106 ~~l~v~~a~~~~~ 118 (284)
+.|+|.|++....
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999976644
No 298
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=113.75 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+.++|||+|||.++|+++|+++|+.|+ .|+++.+...+ +.||||+|.+.++|++|++.|+|..|. |+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l 84 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID---GNKV 84 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC---CeEE
Confidence 355689999999999999999999999885 44555332222 239999999999999999999999998 9999
Q ss_pred EEEEeecCCCCC
Q 023320 109 HIELARSNSRKK 120 (284)
Q Consensus 109 ~v~~a~~~~~~~ 120 (284)
+|+|++.+....
T Consensus 85 ~V~~a~~~~~~~ 96 (102)
T 2fc8_A 85 TLDWAKPKGEGG 96 (102)
T ss_dssp EEEECCCCCSSS
T ss_pred EEEEecCCCCCC
Confidence 999998776543
No 299
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=8.5e-19 Score=129.21 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=72.6
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNM--------LKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~--------v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
.+.++|||+|||.++|+++|+++|++||.|.. |++.. +.+++||||+|.+.++|.+|++.|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45889999999999999999999999999988 77765 3457899999999999999999999999998
Q ss_pred CCCCcEEEEEeeccc
Q 023320 267 SDRGGMHIEYARSKM 281 (284)
Q Consensus 267 ~~~~~l~v~~ak~~~ 281 (284)
+ .|+|+||+.+.
T Consensus 85 ~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 N---PIKVSFATRRA 96 (116)
Confidence 8 99999998764
No 300
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=2.3e-17 Score=121.27 Aligned_cols=76 Identities=18% Similarity=0.354 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe----
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV---- 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~---- 107 (284)
.....+|||+|||+++|+++|+++|++||.|..|.+..+ + ||||+|.+.++|++||+.|||..|. |+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g---~afV~f~~~~~a~~Ai~~l~g~~~~---gr~~~~~ 84 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--G---TGVVEFVRKEDMTYAVRKLDNTKFR---SHEGETA 84 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--S---EEEEEESSHHHHHHHHHHHTTCBCC---CTTSCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--C---EEEEEECCHHHHHHHHHHhCCCEEC---CcEeeeE
Confidence 345789999999999999999999999999999998843 5 9999999999999999999999998 988
Q ss_pred -EEEEEeec
Q 023320 108 -LHIELARS 115 (284)
Q Consensus 108 -l~v~~a~~ 115 (284)
+++..+..
T Consensus 85 ~i~v~~~~~ 93 (115)
T 3beg_B 85 YIRVKVDGP 93 (115)
T ss_dssp BCEEEECC-
T ss_pred EEEeccCCC
Confidence 55555443
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=1.7e-17 Score=136.52 Aligned_cols=78 Identities=14% Similarity=0.125 Sum_probs=70.5
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCC--CceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYP--GFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G--~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..++|||+||+.++|+++|+++|+.|| .|.+|+|+.+ .+++||||+|.+.++|.+||+.|||..|.++ .|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr---~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ---NPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB---CCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE---EeE
Confidence 467999999999999999999999999 9999999874 4567999999999999999999999999988 999
Q ss_pred EEEeecc
Q 023320 274 IEYARSK 280 (284)
Q Consensus 274 v~~ak~~ 280 (284)
|.||+.+
T Consensus 144 V~~a~~~ 150 (229)
T 3q2s_C 144 VTPVNKQ 150 (229)
T ss_dssp EEECCHH
T ss_pred EEECCCC
Confidence 9998643
No 302
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.70 E-value=8.9e-17 Score=124.87 Aligned_cols=84 Identities=19% Similarity=0.309 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||+++|+++|+++|+.||.|..|++..+..++ ++||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD---GRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS---SSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEE
Confidence 4557999999999999999999999999999999998542221 229999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.+++....
T Consensus 144 v~~a~~~~~ 152 (158)
T 2kn4_A 144 VQMARYGRP 152 (158)
T ss_dssp EEEECCSSC
T ss_pred EEECCCCCC
Confidence 999987643
No 303
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=4.7e-17 Score=122.69 Aligned_cols=84 Identities=14% Similarity=0.139 Sum_probs=72.8
Q ss_pred CCCCCCCCeEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeeCCCCe-eEEEEEecCHHHHHHHHHHhCCCeeCCCC
Q 023320 29 QQQDNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRGNQ-VVAFATFVNHQTAVAALHELNGVKFDPQS 104 (284)
Q Consensus 29 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---v~~v~~~~~~~~~~-~~aFV~F~~~~~A~~A~~~l~g~~~~~~~ 104 (284)
.+...+.++|||+|||+++|+++|+++|+.||. |..|+|..+..++. +||||+|.+.++|++|++ ++|..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 344567799999999999999999999999999 88899886544332 299999999999999999 9999998
Q ss_pred CCeEEEEEeecC
Q 023320 105 GSVLHIELARSN 116 (284)
Q Consensus 105 g~~l~v~~a~~~ 116 (284)
|+.|+|.++...
T Consensus 114 gr~i~V~~a~~~ 125 (136)
T 2hgl_A 114 HRYIEVFKSHRT 125 (136)
T ss_dssp SSEEEEEECCHH
T ss_pred CEEEEEEECChH
Confidence 999999988543
No 304
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=2.4e-17 Score=117.14 Aligned_cols=82 Identities=16% Similarity=0.282 Sum_probs=69.7
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...+.++|||+|||..+|+++|+++|+.||.|..+ . .....++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v 85 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSL 85 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--E-ETTEEEEEEEEEESSHHHHHHHHHHTTEEEET---TEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--C-CCCCcceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 35567999999999999999999999999988766 2 11112239999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
+++.....
T Consensus 86 ~~a~~~~~ 93 (96)
T 1fjc_A 86 YYTGEKGG 93 (96)
T ss_dssp EECSSSCC
T ss_pred EEcCCCCC
Confidence 99976643
No 305
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=4.6e-17 Score=118.05 Aligned_cols=74 Identities=5% Similarity=0.013 Sum_probs=67.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
..+|||+|||+++|+++|+++|+.| .|.+|++.. ++++|||||+|.+.++|.+|| .|||..|+++ .|.|..+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V~~a 90 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR---YVEVSPA 90 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE---EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe---EEEEEEC
Confidence 6799999999999999999999999 899999876 456789999999999999999 6999999988 9999887
Q ss_pred ec
Q 023320 278 RS 279 (284)
Q Consensus 278 k~ 279 (284)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 306
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=113.83 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
....++|||+|||+++|+++|+++|+.||.+ .|+|..+..++ +.||||+|.+.++|++||+ +++..+. |+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~i~V 86 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ---HRYVEL 86 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS---SSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC---CcEEEE
Confidence 4456899999999999999999999999955 88888654322 2299999999999999995 7999998 999999
Q ss_pred EEeecCC
Q 023320 111 ELARSNS 117 (284)
Q Consensus 111 ~~a~~~~ 117 (284)
.++....
T Consensus 87 ~~~~~~~ 93 (102)
T 1wez_A 87 FLNSTAG 93 (102)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9876554
No 307
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.5e-17 Score=112.03 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=65.4
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
++|||+|||.++++++|+++|++||.|..+.+..+..++ ++||||+|.+.++|.+|++.++ ..+. |+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~---g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD---SKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS---SCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC---CEEEEEEec
Confidence 479999999999999999999999999999988543222 2299999999999999999999 8887 999999986
No 308
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1e-17 Score=117.63 Aligned_cols=79 Identities=15% Similarity=0.283 Sum_probs=67.0
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
++|||+|||.++++++|+++|++||.|..|++..+...+ ++||||+|.+.+ |.+|+..|+|..+. |+.|+|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~---g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM---GRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS---SSSCSEEEC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC---CeEEEEEEc
Confidence 689999999999999999999999999999998543222 339999999999 99999999999998 999999999
Q ss_pred ecCCC
Q 023320 114 RSNSR 118 (284)
Q Consensus 114 ~~~~~ 118 (284)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2ki2_A 78 NPKKS 82 (90)
T ss_dssp -----
T ss_pred CCCCC
Confidence 76644
No 309
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.4e-17 Score=112.68 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=64.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
+|||+|||.++|+++|+++|++||.|..|.+.. +.+++||||+|.+.++|.+|++. +|..+.|+ .|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE---EEEEEEC
Confidence 699999999999999999999999999999876 34578999999999999999995 89999987 9999876
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=7.4e-17 Score=131.58 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=71.3
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
.|.++|||+|||.++|+++|+++|++||.|.+|+++. +.+++||||+|.+.++|.+|++.|||..+.++ .|++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~---~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK---PVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc---cccc
Confidence 3578999999999999999999999999999999987 34567999999999999999999999999988 9999
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
.++...
T Consensus 90 ~~~~~~ 95 (213)
T 4f02_A 90 MWSQRD 95 (213)
T ss_dssp EECCCC
T ss_pred cccccc
Confidence 998654
No 311
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.3e-17 Score=119.10 Aligned_cols=82 Identities=11% Similarity=0.170 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCe-eEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGF-DFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v-~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||+++|+++|+++|+.||.| ..|+|..+..+. ++||||+|.+.++|++||+. +|..|. |+.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~---gr~i~ 87 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN---GREAF 87 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET---TEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC---CeEEE
Confidence 4567999999999999999999999999999 888888543221 22999999999999999987 999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.++....
T Consensus 88 v~~a~~~~ 95 (114)
T 2cpy_A 88 VHVVTLED 95 (114)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997553
No 312
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-17 Score=114.17 Aligned_cols=79 Identities=23% Similarity=0.293 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
.++++|||+|||.++|+++|+++|++||.|..|++..+.++ ||||+|.+.++|++| ++..+ ...|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g---~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA---FAFVTFADDQIAQSL----CGEDL-IIKGISVHISN 74 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCS---CCEEECSCHHHHHHT----TTCEE-EETTEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCC---EEEEEECCHHHHHHH----hcCCc-eeCCEEEEEEe
Confidence 46799999999999999999999999999999999865566 999999999999764 34444 11288999998
Q ss_pred eecCCCC
Q 023320 113 ARSNSRK 119 (284)
Q Consensus 113 a~~~~~~ 119 (284)
+..+...
T Consensus 75 a~~~~~~ 81 (88)
T 1wf0_A 75 AEPKHNS 81 (88)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 8766543
No 313
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.68 E-value=9.7e-17 Score=112.26 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+..+|||+|||+++|+++|+++|++||.|.+|++..+.+| ||||+|.+.++|++ ++|..+ ...|+.|.|.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srG---faFV~F~~~~~A~~----~~~~~~-~~~g~~v~v~ 79 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRA---FAFVTFADDKVAQS----LCGEDL-IIKGISVHIS 79 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCS---EEEEEESCHHHHHH----HTTCEE-EETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCC---EEEEEECCHHHHHH----HcCCCc-ccCCEEEEEE
Confidence 345789999999999999999999999999999999876677 99999999999983 456554 2238889998
Q ss_pred EeecCC
Q 023320 112 LARSNS 117 (284)
Q Consensus 112 ~a~~~~ 117 (284)
++..+.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 887653
No 314
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=1.6e-16 Score=117.71 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++++|||+|| ++|+++|+++|++||.|..|.+. ..++ ||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg---~aFV~f~~~~~A~~Ai~~lng~~~~---g~~l~V 105 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRN---CAFVTYEKMESADQAVAELNGTQVE---SVQLKV 105 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTT---EEEEECSSHHHHHHHHHHHTTCBCS---SCBCEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCEEC---CeEEEE
Confidence 3566899999996 69999999999999999999886 5566 9999999999999999999999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
.|++....
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 315
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=122.47 Aligned_cols=83 Identities=25% Similarity=0.364 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
..++++|||+|||+++|+++|+++|+.||.|.. +++.... ...+||||+|.+.++|.+|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g-~~~g~afV~f~~~~~A~~Ai~~lng~~~~-- 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEG-RMKGQAFIGLPNEKAAAKALKEANGYVLF-- 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEET-TTEEEEEEECSSHHHHHHHHHHHTTBEET--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCC-CcccEEEEEeCCHHHHHHHHHHhCCCEeC--
Confidence 556899999999999999999999999999865 3333222 22339999999999999999999999998
Q ss_pred CCCeEEEEEeecCCC
Q 023320 104 SGSVLHIELARSNSR 118 (284)
Q Consensus 104 ~g~~l~v~~a~~~~~ 118 (284)
|+.|+|.|++....
T Consensus 119 -g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 -GKPMVVQFARSARP 132 (143)
T ss_dssp -TEECEEEECCCSCC
T ss_pred -CcEEEEEECCCCCC
Confidence 99999999976543
No 316
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-17 Score=119.49 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeee-----CCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYT-----GRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-----~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
..+.++|||+|||.++|+++|+++|+.||.|.. .++.+ .++ ||||+|.+.++|.+|++ |+|..+. |+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g---~afV~f~~~~~a~~A~~-l~g~~~~---g~ 85 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRK---FGYVDFESAEDLEKALE-LTGLKVF---GN 85 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTT---EEEEEESSHHHHHHHHH-GGGCCBT---TB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCc---EEEEEECCHHHHHHHHh-cCCcEEC---Cc
Confidence 456789999999999999999999999998865 22222 344 99999999999999998 9999998 99
Q ss_pred eEEEEEeecCCC
Q 023320 107 VLHIELARSNSR 118 (284)
Q Consensus 107 ~l~v~~a~~~~~ 118 (284)
.|+|.+++.+..
T Consensus 86 ~l~V~~a~~~~~ 97 (101)
T 1fj7_A 86 EIKLEKPKGRDG 97 (101)
T ss_dssp CCEEECCSCCCC
T ss_pred EEEEEEcCCCCC
Confidence 999999976543
No 317
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=1.8e-16 Score=123.77 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=71.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
.++|||+|||.++|+++|+++|+.||.|.++++..+ .+++||||+|.+.++|.+|++.|||..+.++ .|+|.|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~---~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK---TIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc---eEEEEe
Confidence 689999999999999999999999999999999874 3457999999999999999999999999977 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
++.+.
T Consensus 79 ~~~~~ 83 (167)
T 1fxl_A 79 ARPSS 83 (167)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 97543
No 318
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=1.1e-16 Score=111.56 Aligned_cols=73 Identities=19% Similarity=0.381 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcC----C-------CeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRK----P-------GFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
..+.++|||+|||+++|+++|+++|++| | .|..+++. .+++ ||||+|.+.++|.+|+ .|+|..+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~-~~kg---~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-QDKN---FAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC-SSSS---EEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec-CCCc---EEEEEcCCHHHHHHHH-hcCCCEE
Confidence 3467999999999999999999999999 8 89888887 4466 9999999999999999 9999999
Q ss_pred CCCCCCeEEEEE
Q 023320 101 DPQSGSVLHIEL 112 (284)
Q Consensus 101 ~~~~g~~l~v~~ 112 (284)
. |+.|+|+.
T Consensus 78 ~---g~~l~V~r 86 (87)
T 2hzc_A 78 Q---GQSLKIRR 86 (87)
T ss_dssp T---TEECEEEC
T ss_pred C---CeEEEEeC
Confidence 8 99999874
No 319
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.4e-16 Score=113.48 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=68.9
Q ss_pred CCcCeEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEEee-----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 199 QPCSTLFIANLGP-----NCTEDELKQTLSVYPGFNMLKMRAR-----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 199 ~~~~~L~v~nL~~-----~~t~~~L~~~F~~~G~v~~v~~~~~-----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
.++++|+|+||.. +-++++|++.|++||.|.+|.+..+ .++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr- 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR- 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE-
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc-
Confidence 3588999999973 3478999999999999999998863 4578999999999999999999999999988
Q ss_pred CCcEEEEEeec
Q 023320 269 RGGMHIEYARS 279 (284)
Q Consensus 269 ~~~l~v~~ak~ 279 (284)
.|+|+|+..
T Consensus 85 --~i~v~~a~~ 93 (105)
T 2pe8_A 85 --VVKACFYNL 93 (105)
T ss_dssp --ECEEEECCH
T ss_pred --EEEEEEcCH
Confidence 999999864
No 320
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=3.3e-16 Score=123.71 Aligned_cols=84 Identities=25% Similarity=0.312 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
...++++|||+|||+.+++++|+++|+.||.|..|.+..+..+. .+||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~---Gr~l~ 160 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD---GRPMD 160 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS---SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC---CEEEE
Confidence 35567999999999999999999999999999999998543111 229999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|+|+....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99997653
No 321
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.67 E-value=1.2e-16 Score=131.10 Aligned_cols=78 Identities=17% Similarity=0.325 Sum_probs=69.7
Q ss_pred CCcCeEEEeCCCCCC---------CHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCcc-----
Q 023320 199 QPCSTLFIANLGPNC---------TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTL----- 264 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~---------t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~----- 264 (284)
..+++|||+||+..+ ++++|+++|++||.|.+|+++.. ++||||+|.+.++|+.|+++|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 358999999999998 79999999999999999999864 58999999999999999999999999
Q ss_pred -------CCCCCCcEEEEEeeccc
Q 023320 265 -------PSSDRGGMHIEYARSKM 281 (284)
Q Consensus 265 -------~~~~~~~l~v~~ak~~~ 281 (284)
.|+ .|.|.||+...
T Consensus 210 ~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSC---CCEEEECC---
T ss_pred ccccccCCCC---EEEEEEccCCC
Confidence 666 99999998653
No 322
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=1.4e-16 Score=124.57 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=72.2
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC----CcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG----GMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~----~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
++++|||+|||.++|+++|+++|+.||.|.+|++..+. +++||||+|.+.++|.+|++.|||..+.++ .|+|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~---~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK---RLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc---EEEEE
Confidence 47899999999999999999999999999999988743 457999999999999999999999999977 99999
Q ss_pred Eeeccc
Q 023320 276 YARSKM 281 (284)
Q Consensus 276 ~ak~~~ 281 (284)
|++.+.
T Consensus 79 ~~~~~~ 84 (168)
T 1b7f_A 79 YARPGG 84 (168)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 997653
No 323
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.67 E-value=1.5e-16 Score=130.89 Aligned_cols=81 Identities=7% Similarity=-0.016 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCC--CeeEEEEeeeCCCCe--eEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKP--GFDFCQLKYTGRGNQ--VVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~v~~v~~~~~~~~~~--~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..++|||+|||+++|+++|+++|+.|| .|..|+|+.+..+++ +||||+|.+.++|++||+.|+|..|. |+.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~---Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH---GQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT---TBCCE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC---CEEeE
Confidence 567899999999999999999999999 999999986643333 39999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.+++...
T Consensus 144 V~~a~~~~ 151 (229)
T 3q2s_C 144 VTPVNKQF 151 (229)
T ss_dssp EEECCHHH
T ss_pred EEECCCCc
Confidence 99987543
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=115.43 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.++..+|||+|||+++|+++|+++|+.| .|..|+|..+..++ ++||||+|.+.++|++|| .++|..+. ||.|.|
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~---gr~i~V 87 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI---QRYVEV 87 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET---TEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC---CeEEEE
Confidence 3446899999999999999999999999 88899988653322 229999999999999999 69999998 999999
Q ss_pred EEeec
Q 023320 111 ELARS 115 (284)
Q Consensus 111 ~~a~~ 115 (284)
..+..
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 87753
No 325
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=4.2e-16 Score=113.88 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=69.8
Q ss_pred CCcCeEEEeCCCCCCC-----------HHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 199 QPCSTLFIANLGPNCT-----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t-----------~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.++++|+|+||..... +++|+++|++||.|.+|.+....+++||||+|.+.++|.+|++.|||..|.++
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 92 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGR 92 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 4589999999954432 68999999999999999876666789999999999999999999999999988
Q ss_pred CCCcEEEEEeecc
Q 023320 268 DRGGMHIEYARSK 280 (284)
Q Consensus 268 ~~~~l~v~~ak~~ 280 (284)
.|+|+|++.+
T Consensus 93 ---~l~v~~a~~~ 102 (112)
T 2dit_A 93 ---QITAQAWDGT 102 (112)
T ss_dssp ---ECEEEECCSC
T ss_pred ---EEEEEEeCCC
Confidence 9999998764
No 326
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.3e-17 Score=113.41 Aligned_cols=77 Identities=25% Similarity=0.242 Sum_probs=64.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
+.++|||+|||.++|+++|+++|++||.|.+|++..+ +++||||+|.+.++|++ +++..+... +..|+|.+++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~~~-g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLIIK-GISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEEET-TEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCceeC-CEEEEEEecCC
Confidence 4789999999999999999999999999999998765 67999999999999975 455555222 33899999876
Q ss_pred ccc
Q 023320 280 KMR 282 (284)
Q Consensus 280 ~~~ 282 (284)
+..
T Consensus 78 ~~~ 80 (88)
T 1wf0_A 78 KHN 80 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 327
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=5.8e-17 Score=116.47 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=69.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..++|||+|||.++|+++|+++|+.||.|.+|++..+ .+++||||+|.+.++|.+|++ ||..|+|+ .|.|.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v~~ 82 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK---KLKLGP 82 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE---ECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE---EEEEEE
Confidence 3789999999999999999999999999999999873 346799999999999999999 99999977 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87554
No 328
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.66 E-value=1.3e-16 Score=111.05 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=64.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccC----C-------CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVY----P-------GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~----G-------~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
+.++|||+|||.++|+++|+++|++| | .|.++++..+ ++||||+|.+.++|.+|+ .|||..|.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~- 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ- 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe-
Confidence 47899999999999999999999999 8 8999988765 589999999999999999 9999999987
Q ss_pred CCcEEEE
Q 023320 269 RGGMHIE 275 (284)
Q Consensus 269 ~~~l~v~ 275 (284)
.|+|+
T Consensus 81 --~l~V~ 85 (87)
T 2hzc_A 81 --SLKIR 85 (87)
T ss_dssp --ECEEE
T ss_pred --EEEEe
Confidence 88886
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.66 E-value=5.7e-17 Score=122.60 Aligned_cols=77 Identities=13% Similarity=0.078 Sum_probs=69.1
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEY 276 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ 276 (284)
..++|||+|||+++|+++|+++|++|| +++|+++. +++++||||+|.+.++|++|| .+|+..|.++ .|+|.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR---~i~V~~ 119 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR---YIELFL 119 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC---CCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE---EEEEEE
Confidence 367999999999999999999999999 77898876 445789999999999999999 8999999988 999999
Q ss_pred eeccc
Q 023320 277 ARSKM 281 (284)
Q Consensus 277 ak~~~ 281 (284)
+..+.
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87653
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=6.2e-18 Score=124.56 Aligned_cols=85 Identities=21% Similarity=0.327 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeE--------EEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDF--------CQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~--------v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
..++++|||+|||.++++++|+++|++||.|.. |++..+...+ ++||||+|.+.++|++|++.|+|..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456899999999999999999999999999988 7777442221 229999999999999999999999998
Q ss_pred CCCCCeEEEEEeecCCCC
Q 023320 102 PQSGSVLHIELARSNSRK 119 (284)
Q Consensus 102 ~~~g~~l~v~~a~~~~~~ 119 (284)
|+.|+|.+++.+...
T Consensus 84 ---g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 ---GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 331
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=1.3e-15 Score=129.40 Aligned_cols=79 Identities=28% Similarity=0.454 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++++|||+|||..+|+++|+++|++||.|..|++..+.++ ||||+|.+.++|.+|++.|||..+. .|+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g---~afV~f~~~~~A~~A~~~l~g~~~~--~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHD---IAFVEFDNEVQAGAARDALQGFKIT--QNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCc---EEEEEeCCHHHHHHHHHHcCCcEeC--CCCEEEE
Confidence 4557899999999999999999999999999999999844445 9999999999999999999999984 3899999
Q ss_pred EEee
Q 023320 111 ELAR 114 (284)
Q Consensus 111 ~~a~ 114 (284)
.|++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 332
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.66 E-value=2.7e-16 Score=128.98 Aligned_cols=81 Identities=19% Similarity=0.286 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCCcc---------cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee-
Q 023320 31 QDNGINTLFVSGLPDDV---------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF- 100 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~- 100 (284)
....+++|||+||+..+ +|++|+++|++||.|.+|+|. ..++ ||||+|.+.++|+.|++.|+|..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~-~~kG---~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV-ESKN---CGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE-GGGT---EEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE-CCCC---EEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 36678999999999998 799999999999999999988 5567 999999999999999999999999
Q ss_pred -----------CCCCCCeEEEEEeecCCC
Q 023320 101 -----------DPQSGSVLHIELARSNSR 118 (284)
Q Consensus 101 -----------~~~~g~~l~v~~a~~~~~ 118 (284)
. |+.|.|.||+....
T Consensus 206 ~~~~~e~~~~~~---gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 206 LPSDKEWDDRRE---GTGLLVKWANEDPD 231 (240)
T ss_dssp CTTSTTGGGGGG---SCCCEEEECC----
T ss_pred ccccccccccCC---CCEEEEEEccCCCC
Confidence 6 99999999986644
No 333
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.65 E-value=2.7e-16 Score=129.65 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=73.0
Q ss_pred CCcCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 199 QPCSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 199 ~~~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
+++++|||+|||. ++|+++|+++|+.||.|.+|++..+. ++||||+|.+.++|.+|++.|||..|.|+ .|+|+|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v~~a 107 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS 107 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSS---BCEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEEEe
Confidence 4589999999999 99999999999999999999998865 68999999999999999999999999988 9999999
Q ss_pred ecc
Q 023320 278 RSK 280 (284)
Q Consensus 278 k~~ 280 (284)
+.+
T Consensus 108 ~~~ 110 (229)
T 2adc_A 108 KHQ 110 (229)
T ss_dssp SCC
T ss_pred cCc
Confidence 854
No 334
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=6.2e-17 Score=109.48 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=63.5
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEe
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELA 113 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 113 (284)
+|||+|||.++|+++|+++|++||.|..|++..+..++ ++||||+|.+.++|.+|++. ++..+. |+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~---g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG---LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT---TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC---CEEEEEEEC
Confidence 69999999999999999999999999999887542211 22999999999999999985 888898 999999875
No 335
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-16 Score=116.04 Aligned_cols=81 Identities=12% Similarity=0.102 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCC---eeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPG---FDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
.....+|||+|||+++|+++|+++|+.||. |..|++..+..++ .+||||+|.+.++|++|++ ++|..+. |+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~---gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG---QRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS---SSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC---CeE
Confidence 456799999999999999999999999988 8889888543322 2299999999999999999 9999998 999
Q ss_pred EEEEEeecC
Q 023320 108 LHIELARSN 116 (284)
Q Consensus 108 l~v~~a~~~ 116 (284)
|+|.++...
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999988643
No 336
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-16 Score=118.28 Aligned_cols=76 Identities=13% Similarity=0.010 Sum_probs=67.0
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCc----eEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGF----NMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGM 272 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v----~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l 272 (284)
...+|||+|||+++|+++|+++|+.||.| ..|++.. +++++||||+|.+.++|.+||+. ||..|.++ .|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR---~i 97 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR---YI 97 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC---EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe---EE
Confidence 36899999999999999999999999975 6888776 34567999999999999999996 99999988 89
Q ss_pred EEEEeec
Q 023320 273 HIEYARS 279 (284)
Q Consensus 273 ~v~~ak~ 279 (284)
.|..+..
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 8888754
No 337
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.64 E-value=2.5e-16 Score=116.89 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=66.9
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCce--EEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFN--MLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHI 274 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~--~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v 274 (284)
..++|||+|||+++|+++|+++|+.| .|. +|++.. ++++|||||+|.+.++|.+||+. ++..|.++ .|+|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR---~I~V 115 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHR---YIEV 115 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB---CCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCE---EEEE
Confidence 47889999999999999999999999 677 888775 45678999999999999999985 78999988 9999
Q ss_pred EEeecc
Q 023320 275 EYARSK 280 (284)
Q Consensus 275 ~~ak~~ 280 (284)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 888543
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.6e-16 Score=113.07 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
..+.++|||+|||.++|+++|+++|+.||.|..|++..+..+. ++||||+|.+.++|++|++ +|..+. |+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~---g~~l~v 80 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH---GKKLKL 80 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET---TEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC---CEEEEE
Confidence 4456999999999999999999999999999999998654221 2399999999999999998 999998 999999
Q ss_pred EEeecCCC
Q 023320 111 ELARSNSR 118 (284)
Q Consensus 111 ~~a~~~~~ 118 (284)
.++.....
T Consensus 81 ~~a~~~~~ 88 (102)
T 2xs2_A 81 GPAIRKQN 88 (102)
T ss_dssp EEEEECC-
T ss_pred EECCcCcc
Confidence 99976543
No 339
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=1.1e-15 Score=120.31 Aligned_cols=82 Identities=13% Similarity=0.203 Sum_probs=71.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee------CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR------GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~------~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..++|||+|||.++|+++|+++|++||.|.+|+++.+ .+++||||+|.+.++|.+|++.|||..+.+..+..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 3689999999999999999999999999999998874 4567999999999999999999999988744355888
Q ss_pred EEEeeccc
Q 023320 274 IEYARSKM 281 (284)
Q Consensus 274 v~~ak~~~ 281 (284)
+.+++.+.
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88887554
No 340
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.7e-15 Score=118.02 Aligned_cols=81 Identities=21% Similarity=0.379 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVNHQTAVAALHELNGVKFDPQSGSVL 108 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l 108 (284)
...+.++|||+|||..+|+++|+++|+.||.|..+++..+..++.+ ||||+|.+.++|.+|+..|+|..+. |+.|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i 159 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN---GRPL 159 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET---TEEC
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccC---CcEE
Confidence 3456789999999999999999999999999999999865333332 9999999999999999999999998 9999
Q ss_pred EEEEee
Q 023320 109 HIELAR 114 (284)
Q Consensus 109 ~v~~a~ 114 (284)
+|.|++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 341
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.9e-16 Score=115.00 Aligned_cols=80 Identities=16% Similarity=0.142 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCe----eEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGF----DFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v----~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
..+..+|||+|||+++|+++|+++|++||.| ..|+|..+..++ ++||||+|.+.++|++||+. ++..+. ||
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~---gR 95 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG---KR 95 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS---SC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC---Ce
Confidence 3457899999999999999999999999975 688888653332 23999999999999999986 999998 99
Q ss_pred eEEEEEeec
Q 023320 107 VLHIELARS 115 (284)
Q Consensus 107 ~l~v~~a~~ 115 (284)
.|.|..+..
T Consensus 96 ~i~V~~a~~ 104 (123)
T 2dha_A 96 YIELFRSTA 104 (123)
T ss_dssp EECCEEECH
T ss_pred EEEEEECCH
Confidence 999987753
No 342
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.62 E-value=6.7e-16 Score=124.26 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=71.4
Q ss_pred cCeEEEeCCCC-CCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEeec
Q 023320 201 CSTLFIANLGP-NCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYARS 279 (284)
Q Consensus 201 ~~~L~v~nL~~-~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak~ 279 (284)
+++|||+|||. ++|+++|+++|+.||.|.+|++..+. ++||||+|.+.++|.+|++.|||..+.|+ .|+|+|++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEecC
Confidence 68999999999 99999999999999999999988764 68999999999999999999999999988 999999985
Q ss_pred c
Q 023320 280 K 280 (284)
Q Consensus 280 ~ 280 (284)
+
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 343
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.62 E-value=8.2e-15 Score=117.66 Aligned_cols=83 Identities=19% Similarity=0.337 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||..+++++|+++|++||.|..|++..+...+ .+||||+|.+.++|.+|++.|+|..+. |+.|+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 187 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLL 187 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET---TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC---CEEEE
Confidence 4667999999999999999999999999999999998653222 339999999999999999999999998 99999
Q ss_pred EEEeecCC
Q 023320 110 IELARSNS 117 (284)
Q Consensus 110 v~~a~~~~ 117 (284)
|.|++...
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.61 E-value=9.2e-16 Score=113.82 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=66.6
Q ss_pred CCCCCCeEEEcCCCCcccHHHHHHHhhcCCCee--EEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 31 QDNGINTLFVSGLPDDVRAREIHNLFRRKPGFD--FCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 31 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~--~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
.....++|||+|||+++|+++|+++|+.| .|. .|+|..+..++ ++||||+|.+.++|++|++. ++..|. ||.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~---gR~ 112 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG---HRY 112 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT---TBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC---CEE
Confidence 34557899999999999999999999999 666 88887553322 22999999999999999985 778887 999
Q ss_pred EEEEEeec
Q 023320 108 LHIELARS 115 (284)
Q Consensus 108 l~v~~a~~ 115 (284)
|.|.++..
T Consensus 113 I~V~~a~~ 120 (126)
T 2hgm_A 113 IEVFKSSQ 120 (126)
T ss_dssp CCCEEECH
T ss_pred EEEEECCH
Confidence 99988754
No 345
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.61 E-value=4.6e-15 Score=120.81 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+.++|||+|||.++|+++|+++|+.||.|..|++..+..++ .+||||+|.+.++|.+|++.|+|..|. |+.|+|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~---g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG---GQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCS---SSBCEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeC---CcEEEE
Confidence 456899999999999999999999999999999998653322 239999999999999999999999998 999999
Q ss_pred EEeecCCCC
Q 023320 111 ELARSNSRK 119 (284)
Q Consensus 111 ~~a~~~~~~ 119 (284)
.|+......
T Consensus 200 ~~a~~~~~~ 208 (216)
T 2qfj_A 200 GKAVTPPMP 208 (216)
T ss_dssp EECSSCSST
T ss_pred EEecCCCCC
Confidence 999876543
No 346
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=2.3e-16 Score=119.22 Aligned_cols=80 Identities=19% Similarity=0.235 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
....++|||+|||+++|+++|+++|++|| |..|+|..+..++ +.||||+|.+.++|++|| .+++..+. |+.|.|
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~---gR~i~V 117 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ---HRYIEL 117 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS---SCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC---CEEEEE
Confidence 44568999999999999999999999999 6688888553322 229999999999999999 78999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.++...
T Consensus 118 ~~a~~~ 123 (139)
T 2hgn_A 118 FLNSTT 123 (139)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 887654
No 347
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=5.4e-16 Score=113.18 Aligned_cols=77 Identities=8% Similarity=0.100 Sum_probs=67.2
Q ss_pred CeEEEeCC----CCCCCHHHHHHHhccCCCceEEEEEe----eCCcCeEEEEeCC----HHH----HHHHHH--HhCCCc
Q 023320 202 STLFIANL----GPNCTEDELKQTLSVYPGFNMLKMRA----RGGMPVAFADFEE----VEQ----ASIAME--GLQDST 263 (284)
Q Consensus 202 ~~L~v~nL----~~~~t~~~L~~~F~~~G~v~~v~~~~----~~~~~~afV~f~~----~e~----A~~A~~--~lng~~ 263 (284)
+.|||+|| |+.+++++|+++|+.||+|.++.++. +.++|||||+|.+ +++ |.+|++ .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 99999999999999999999999888 4557799999996 433 899998 899999
Q ss_pred cCCCCCCcEEEEEeeccc
Q 023320 264 LPSSDRGGMHIEYARSKM 281 (284)
Q Consensus 264 ~~~~~~~~l~v~~ak~~~ 281 (284)
|+|+ +|+|.+-++..
T Consensus 83 I~Gr---~irV~ln~~g~ 97 (136)
T 2j8a_A 83 IMGF---KFEVILNKHSI 97 (136)
T ss_dssp ETTE---EEEEEECCTTH
T ss_pred ecCc---EEEEEECcccH
Confidence 9988 99999987643
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=111.78 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=53.4
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe-------eCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA-------RGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~-------~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
..++|||+|||.++|+++|+++|++||.|. +.++. +.+++||||+|.+.++|++|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 478999999999999999999999999999 66654 255789999999999999999999
No 349
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.61 E-value=2.7e-15 Score=134.55 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|+.+..++ .+||||+|.+.++|..||..|||..|. |+.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~---gr~i~ 175 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID---GRRVL 175 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC---CEEEE
Confidence 3456899999999999999999999999999999998553222 229999999999999999999999998 99999
Q ss_pred EEEeecCCC
Q 023320 110 IELARSNSR 118 (284)
Q Consensus 110 v~~a~~~~~ 118 (284)
|.|+.....
T Consensus 176 V~~a~~~~~ 184 (437)
T 3pgw_S 176 VDVERGRTV 184 (437)
T ss_pred EEEeCCCCC
Confidence 999986543
No 350
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=1.8e-15 Score=121.29 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred CcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEee----CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 200 PCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRAR----GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~----~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
..++|||+|||.++|+++|+++|+.||.|.+|.++.+ .+++||||+|.+.++|.+|++. +|..|.|+ .|.|.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~---~l~v~ 87 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR---VVEPK 87 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE---ECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE---Eeeee
Confidence 4889999999999999999999999999999999873 3467999999999999999986 99999987 99999
Q ss_pred Eeecc
Q 023320 276 YARSK 280 (284)
Q Consensus 276 ~ak~~ 280 (284)
++..+
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.3e-15 Score=108.43 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=67.7
Q ss_pred CCcCeEEEeCCC--CCCC--------HHHHHHHhccCCCceEEEEEee------CCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 199 QPCSTLFIANLG--PNCT--------EDELKQTLSVYPGFNMLKMRAR------GGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 199 ~~~~~L~v~nL~--~~~t--------~~~L~~~F~~~G~v~~v~~~~~------~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
.|+++|.|.|+- ..+. ++||++.|++||.|.+|.+..+ .++|+|||+|.+.++|.+|+++|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 468999999983 3333 3699999999999999998763 35789999999999999999999999
Q ss_pred ccCCCCCCcEEEEEeec
Q 023320 263 TLPSSDRGGMHIEYARS 279 (284)
Q Consensus 263 ~~~~~~~~~l~v~~ak~ 279 (284)
.+.|| .|+|+|+..
T Consensus 83 ~f~GR---~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANR---VVVTKYCDP 96 (105)
T ss_dssp EETTE---ECEEEEECH
T ss_pred EeCCC---EEEEEEeCH
Confidence 99988 999999743
No 352
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.60 E-value=5.6e-15 Score=115.93 Aligned_cols=78 Identities=22% Similarity=0.373 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC--eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN--QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
...++|||+|||.++|+++|+++|++||.|..+++..+...+ ++||||+|.+.++|.+|++.|+|..+. |+.|+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~l~V 168 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG---DKKLLV 168 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET---TEECEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC---CeEEEE
Confidence 347899999999999999999999999999999998653222 239999999999999999999999998 999999
Q ss_pred EEe
Q 023320 111 ELA 113 (284)
Q Consensus 111 ~~a 113 (284)
.||
T Consensus 169 ~~A 171 (172)
T 2g4b_A 169 QRA 171 (172)
T ss_dssp EEC
T ss_pred EeC
Confidence 987
No 353
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=2.5e-15 Score=120.43 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=68.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEe
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYA 277 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~a 277 (284)
.++|||+|||.++|+++|+++|++||.|.+|++.. +.++|||||+|.+.++|.+|++.++ ..+.|+ .|+|.++
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V~~~ 184 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKET---DLLILFK 184 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE---ECEEEET
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCE---EEEEEEh
Confidence 68999999999999999999999999999999887 4457899999999999999998775 589977 9999998
Q ss_pred ecc
Q 023320 278 RSK 280 (284)
Q Consensus 278 k~~ 280 (284)
++-
T Consensus 185 ~~y 187 (193)
T 2voo_A 185 DDY 187 (193)
T ss_dssp TTC
T ss_pred HHH
Confidence 753
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=110.13 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC-----CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG-----NQVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~-----~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
....++|||+|||+++|+++|+++|++||.|. +.+..+... .++||||+|.+.++|++|++.|++ +. |+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~---G~ 78 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED---GK 78 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET---TE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC---Cc
Confidence 45679999999999999999999999999998 666643321 122999999999999999998843 44 66
Q ss_pred eEEEEEe
Q 023320 107 VLHIELA 113 (284)
Q Consensus 107 ~l~v~~a 113 (284)
.+.+..+
T Consensus 79 ~~~~~~~ 85 (114)
T 2dnl_A 79 LYLCVSS 85 (114)
T ss_dssp EEEEECC
T ss_pred EEEeccC
Confidence 6666543
No 355
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=2.8e-15 Score=129.36 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=67.8
Q ss_pred CCCcCeEEEeC--CCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC--cEE
Q 023320 198 VQPCSTLFIAN--LGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GMH 273 (284)
Q Consensus 198 ~~~~~~L~v~n--L~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~--~l~ 273 (284)
..|+++|||+| |+..+|+++|+++|++||.|.+|.+.. +|+||||+|.+.++|++|+++|||..+.+..|. .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 35689999999 578999999999999999999988765 569999999999999999999999998433122 688
Q ss_pred EEEee
Q 023320 274 IEYAR 278 (284)
Q Consensus 274 v~~ak 278 (284)
|.|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88874
No 356
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.58 E-value=1.3e-14 Score=104.37 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=69.0
Q ss_pred CCCCCeEEEcCCCC-----cccHHHHHHHhhcCCCeeEEEEeeeCC---CCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 32 DNGINTLFVSGLPD-----DVRAREIHNLFRRKPGFDFCQLKYTGR---GNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 32 ~~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~v~~v~~~~~~~---~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
..++++|+|+||.. +-++++|+++|++||.|.+|.|..+.+ ...+||||+|.+.++|.+|++.|||..+.
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~-- 82 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG-- 82 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET--
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC--
Confidence 35689999999973 237899999999999999999985422 12349999999999999999999999998
Q ss_pred CCCeEEEEEeecC
Q 023320 104 SGSVLHIELARSN 116 (284)
Q Consensus 104 ~g~~l~v~~a~~~ 116 (284)
||.|++.++...
T Consensus 83 -Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 83 -GRVVKACFYNLD 94 (105)
T ss_dssp -TEECEEEECCHH
T ss_pred -CcEEEEEEcCHH
Confidence 999999998653
No 357
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.57 E-value=6.2e-15 Score=123.86 Aligned_cols=77 Identities=23% Similarity=0.318 Sum_probs=71.0
Q ss_pred CCcCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEEEee
Q 023320 199 QPCSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIEYAR 278 (284)
Q Consensus 199 ~~~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~~ak 278 (284)
...++|||+|||.++|+++|+++|+.||.|..|.+.+. ++||||+|.+.++|.+|++.|||..|.++ .|+|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKSR---PLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETTE---ECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECCc---eeEeeecc
Confidence 44789999999999999999999999999999998654 58999999999999999999999999977 99999987
Q ss_pred cc
Q 023320 279 SK 280 (284)
Q Consensus 279 ~~ 280 (284)
..
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.6e-14 Score=104.29 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=68.8
Q ss_pred CCCCCeEEEcCCCCcc-----------cHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCee
Q 023320 32 DNGINTLFVSGLPDDV-----------RAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKF 100 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~-----------te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~ 100 (284)
..++++|+|+||.... ++++|+++|++||.|..|.|. +. ..++||||+|.+.++|.+|+..|||..+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DR-HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TT-CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cC-CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3468999999994432 268999999999999999663 32 2223999999999999999999999999
Q ss_pred CCCCCCeEEEEEeecCCCCC
Q 023320 101 DPQSGSVLHIELARSNSRKK 120 (284)
Q Consensus 101 ~~~~g~~l~v~~a~~~~~~~ 120 (284)
. |+.|+|.++.......
T Consensus 90 ~---gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 90 G---GRQITAQAWDGTTDYQ 106 (112)
T ss_dssp T---TEECEEEECCSCCCSS
T ss_pred C---CcEEEEEEeCCCCCcc
Confidence 8 9999999997765443
No 359
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.56 E-value=8.5e-15 Score=106.87 Aligned_cols=77 Identities=14% Similarity=0.186 Sum_probs=66.7
Q ss_pred CeEEEcCC----CCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee--EEEEEecC----HHH----HHHHHH--HhCCCe
Q 023320 36 NTLFVSGL----PDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV--VAFATFVN----HQT----AVAALH--ELNGVK 99 (284)
Q Consensus 36 ~~lfV~nL----p~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~--~aFV~F~~----~~~----A~~A~~--~l~g~~ 99 (284)
..|||+|| |+.+++++|+++|+.||.|.+|.++.+..++.+ ||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999987666555 99999996 333 889988 789999
Q ss_pred eCCCCCCeEEEEEeec
Q 023320 100 FDPQSGSVLHIELARS 115 (284)
Q Consensus 100 ~~~~~g~~l~v~~a~~ 115 (284)
|. |+.|+|.+-+.
T Consensus 83 I~---Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IM---GFKFEVILNKH 95 (136)
T ss_dssp ET---TEEEEEEECCT
T ss_pred ec---CcEEEEEECcc
Confidence 98 99999997643
No 360
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.55 E-value=5.2e-15 Score=115.53 Aligned_cols=80 Identities=19% Similarity=0.271 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCC--CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRG--NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~--~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+.++|||+|||.++|+++|+++|+.||.|..+++..+..+ ..+||||+|.+.++|.+|++ ++|..+. |+.|+|
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~---g~~i~V 160 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK---DRKIEI 160 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSS---SSCEEE
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeC---CeEEEE
Confidence 34679999999999999999999999999999998854221 22399999999999999998 8999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
.|+.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999764
No 361
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=7.6e-15 Score=115.61 Aligned_cols=79 Identities=16% Similarity=0.289 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEE
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIE 111 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 111 (284)
..+.++|||+|||..+|+++|+++|+.||.|..+ . ......+||||+|.+.++|.+|+..|+|..+. |+.|+|.
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~-~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~---g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--S-QDGKSKGIAYIEFKSEADAEKNLEEKQGAEID---GRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--C-SSSSCCSEEEEECSSHHHHHHHHHHHTEEEET---TEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--c-CCCCCceEEEEEECCHHHHHHHHHHhCCCEEC---CeEEEEE
Confidence 4467999999999999999999999999988766 2 11111229999999999999999999999998 9999999
Q ss_pred EeecC
Q 023320 112 LARSN 116 (284)
Q Consensus 112 ~a~~~ 116 (284)
|++.+
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99765
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-14 Score=99.76 Aligned_cols=76 Identities=17% Similarity=0.179 Sum_probs=63.6
Q ss_pred cCeEEEeCCC-------CCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEE
Q 023320 201 CSTLFIANLG-------PNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMH 273 (284)
Q Consensus 201 ~~~L~v~nL~-------~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~ 273 (284)
..+|-|.-.. ..+|+++|+++|++||.|.+|.+. +.+++||||+|.+.++|.+|++.++| +.++ +|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~---~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEVG--LVDN---PLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCCB--CSSS---BCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcCC--CCCC---eEE
Confidence 4456665544 468999999999999999999988 46679999999999999999999766 4556 999
Q ss_pred EEEeecccc
Q 023320 274 IEYARSKMR 282 (284)
Q Consensus 274 v~~ak~~~~ 282 (284)
|+|++.+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999987754
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=2.9e-14 Score=114.19 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEE
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIEL 112 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 112 (284)
..++|||+|||+++|+++|+++|++||.|..|++..+..+. ++||||+|.+.++|.+|+..++ ..+. |+.|.|.+
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~---Gr~l~V~~ 183 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK---ETDLLILF 183 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET---TEECEEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC---CEEEEEEE
Confidence 35899999999999999999999999999999988543322 2399999999999999998665 5887 99999998
Q ss_pred eecCCC
Q 023320 113 ARSNSR 118 (284)
Q Consensus 113 a~~~~~ 118 (284)
++....
T Consensus 184 ~~~y~~ 189 (193)
T 2voo_A 184 KDDYFA 189 (193)
T ss_dssp TTTC--
T ss_pred hHHHHH
Confidence 766543
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=2.6e-14 Score=104.10 Aligned_cols=77 Identities=10% Similarity=0.119 Sum_probs=67.7
Q ss_pred CcCeEEEeCCCCCCC----------HHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCC
Q 023320 200 PCSTLFIANLGPNCT----------EDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDR 269 (284)
Q Consensus 200 ~~~~L~v~nL~~~~t----------~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~ 269 (284)
++++|.|.|+=..-. ++||++.|++||.|.+|.+.+..++|+|||+|.+.++|.+|++.|||..+.|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR-- 83 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK-- 83 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE--
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE--
Confidence 588999999874322 34889999999999999998776789999999999999999999999999988
Q ss_pred CcEEEEEeec
Q 023320 270 GGMHIEYARS 279 (284)
Q Consensus 270 ~~l~v~~ak~ 279 (284)
.|+|+|+..
T Consensus 84 -~i~v~~~~~ 92 (114)
T 3s6e_A 84 -MITAAYVPL 92 (114)
T ss_dssp -ECEEEEECH
T ss_pred -EEEEEEEcH
Confidence 999999853
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=2e-14 Score=124.10 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=68.0
Q ss_pred CCCCCeEEEcC--CCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC--e
Q 023320 32 DNGINTLFVSG--LPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGS--V 107 (284)
Q Consensus 32 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~--~ 107 (284)
.+|+++|||+| |++.+||++|+++|++||.|..|.+. .+|+ ||||+|.+.++|++|++.|||..+....|+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~-~~kg---faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP-PNKP---YSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC-TTCS---EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe-CCCC---EEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 67799999999 57899999999999999999988775 4555 999999999999999999999999534466 6
Q ss_pred EEEEEee
Q 023320 108 LHIELAR 114 (284)
Q Consensus 108 l~v~~a~ 114 (284)
+.+.|+.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777763
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.52 E-value=3.8e-14 Score=103.95 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=66.5
Q ss_pred CcCeEEEeCCCC-----CCCHHHHHHHhccCCCceEEEEEeeC--------CcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 200 PCSTLFIANLGP-----NCTEDELKQTLSVYPGFNMLKMRARG--------GMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 200 ~~~~L~v~nL~~-----~~t~~~L~~~F~~~G~v~~v~~~~~~--------~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
++++|+|+|+-. +-.++||++.|++||.|.+|.+..+. ++|++||+|.+.++|.+|+++|||+.+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 689999999952 22468999999999999999988732 34799999999999999999999999998
Q ss_pred CCCCcEEEEEee
Q 023320 267 SDRGGMHIEYAR 278 (284)
Q Consensus 267 ~~~~~l~v~~ak 278 (284)
| .|+|+|+.
T Consensus 99 R---~i~v~~~~ 107 (118)
T 3ue2_A 99 R---KVVAEVYD 107 (118)
T ss_dssp E---ECEEEEEC
T ss_pred c---EEEEEEcC
Confidence 8 99999974
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.2e-13 Score=95.97 Aligned_cols=78 Identities=15% Similarity=0.111 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCC-------CcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCC
Q 023320 33 NGINTLFVSGLP-------DDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSG 105 (284)
Q Consensus 33 ~~~~~lfV~nLp-------~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g 105 (284)
...++|.|.-.. ..+|+++|+++|++||.|..|.|....++ ||||+|.+.++|..|++.+++ +. |
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rG---faFVeF~~~~~A~~Ai~~~~~--~~---g 79 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPG---TAVVEFATVKAAELAVQNEVG--LV---D 79 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSS---EEEEEESCHHHHHHHHHTCCB--CS---S
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCC---EEEEEECCHHHHHHHHHhcCC--CC---C
Confidence 335677777655 45899999999999999999998854556 999999999999999998555 45 8
Q ss_pred CeEEEEEeecCCC
Q 023320 106 SVLHIELARSNSR 118 (284)
Q Consensus 106 ~~l~v~~a~~~~~ 118 (284)
++|+|.|++....
T Consensus 80 ~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 NPLKISWLEGQPQ 92 (100)
T ss_dssp SBCEEECSSCCCC
T ss_pred CeEEEEEccCCCC
Confidence 9999999876644
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=8.8e-15 Score=105.18 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=58.5
Q ss_pred EeCCCCCCCHHHHHHHh------------ccCCCceEEEEEee---CCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC
Q 023320 206 IANLGPNCTEDELKQTL------------SVYPGFNMLKMRAR---GGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRG 270 (284)
Q Consensus 206 v~nL~~~~t~~~L~~~F------------~~~G~v~~v~~~~~---~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~ 270 (284)
+.||+..+++++|++.| ++||.|.+|.+..+ .++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr--- 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ--- 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE---
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE---
Confidence 34555666777776655 99999999999873 3578999999999999999999999999988
Q ss_pred cEEEEEe
Q 023320 271 GMHIEYA 277 (284)
Q Consensus 271 ~l~v~~a 277 (284)
.|+|+|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=1.8e-13 Score=98.42 Aligned_cols=81 Identities=14% Similarity=0.222 Sum_probs=66.9
Q ss_pred CCCCeEEEcCC--CCcc--------cHHHHHHHhhcCCCeeEEEEeeeCCC----CeeEEEEEecCHHHHHHHHHHhCCC
Q 023320 33 NGINTLFVSGL--PDDV--------RAREIHNLFRRKPGFDFCQLKYTGRG----NQVVAFATFVNHQTAVAALHELNGV 98 (284)
Q Consensus 33 ~~~~~lfV~nL--p~~~--------te~~L~~~F~~~G~v~~v~~~~~~~~----~~~~aFV~F~~~~~A~~A~~~l~g~ 98 (284)
.|+++|.+.|+ |.++ .+++|++.|++||.|.+|+|..+..+ ..++|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 47899999998 3333 34689999999999999998844211 1239999999999999999999999
Q ss_pred eeCCCCCCeEEEEEeecC
Q 023320 99 KFDPQSGSVLHIELARSN 116 (284)
Q Consensus 99 ~~~~~~g~~l~v~~a~~~ 116 (284)
.+. ||.|++.++...
T Consensus 83 ~f~---GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFA---NRVVVTKYCDPD 97 (105)
T ss_dssp EET---TEECEEEEECHH
T ss_pred EeC---CCEEEEEEeCHH
Confidence 998 999999997543
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.42 E-value=7e-13 Score=97.19 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCeEEEcCCCCc-----ccHHHHHHHhhcCCCeeEEEEeeeCCC----C--eeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 34 GINTLFVSGLPDD-----VRAREIHNLFRRKPGFDFCQLKYTGRG----N--QVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 34 ~~~~lfV~nLp~~-----~te~~L~~~F~~~G~v~~v~~~~~~~~----~--~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
++++|+|+|+-.. -.++||++.|++||.|.+|+|..+..+ . .++|||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 6899999999432 246799999999999999999855331 1 239999999999999999999999998
Q ss_pred CCCCeEEEEEeec
Q 023320 103 QSGSVLHIELARS 115 (284)
Q Consensus 103 ~~g~~l~v~~a~~ 115 (284)
||.|++.|+..
T Consensus 98 --GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 --GRKVVAEVYDQ 108 (118)
T ss_dssp --TEECEEEEECH
T ss_pred --CcEEEEEEcCh
Confidence 99999999854
No 371
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.4e-13 Score=90.29 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=66.1
Q ss_pred CCCCcCeEEEeCCC----CCCCH----HHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCC
Q 023320 197 GVQPCSTLFIANLG----PNCTE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSD 268 (284)
Q Consensus 197 ~~~~~~~L~v~nL~----~~~t~----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~ 268 (284)
..||..||+|.-.+ .++.+ .+|.+.|++||+|..+++..+. +||+|.+.++|.+|++ |||..+.||
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr- 76 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNR- 76 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTE-
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCe-
Confidence 35678899998876 34545 5788999999999999999876 9999999999999999 999999988
Q ss_pred CCcEEEEEeecc
Q 023320 269 RGGMHIEYARSK 280 (284)
Q Consensus 269 ~~~l~v~~ak~~ 280 (284)
.|+|++++..
T Consensus 77 --~LkV~lkt~d 86 (91)
T 2dnr_A 77 --TITIALKSPS 86 (91)
T ss_dssp --EEEEEECCCS
T ss_pred --EEEEEeCCCC
Confidence 9999998754
No 372
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=2.4e-12 Score=93.90 Aligned_cols=76 Identities=11% Similarity=0.021 Sum_probs=66.9
Q ss_pred CCCCcCeEEEeCCCCC-CCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCC-HHHHHHHHHHhC--CCccCCCCCCcE
Q 023320 197 GVQPCSTLFIANLGPN-CTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE-VEQASIAMEGLQ--DSTLPSSDRGGM 272 (284)
Q Consensus 197 ~~~~~~~L~v~nL~~~-~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~-~e~A~~A~~~ln--g~~~~~~~~~~l 272 (284)
..+++..|||+||+.. +++++|+++|+.||+|..|++..+. ..|||+|.+ .++|..|+++|| |..|.+. .+
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~--~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~---~~ 88 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA--KEGIILFKEKAKEALGKAKDANNGNLQLRNK---EV 88 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC--SEEEEEESSCHHHHHHHHHHTTTSCBCTTSS---SE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CEEEEEECCChHHHHHHHHHhhcCCcEEeCc---EE
Confidence 3456999999999999 9999999999999999999998865 589999999 899999999995 7777765 77
Q ss_pred EEEEe
Q 023320 273 HIEYA 277 (284)
Q Consensus 273 ~v~~a 277 (284)
+++..
T Consensus 89 ~~evL 93 (121)
T 1owx_A 89 TWEVL 93 (121)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 77754
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=5.1e-13 Score=95.88 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=59.6
Q ss_pred EcCCCCcccHHHHHHHh------------hcCCCeeEEEEeeeCCCC-eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCC
Q 023320 40 VSGLPDDVRAREIHNLF------------RRKPGFDFCQLKYTGRGN-QVVAFATFVNHQTAVAALHELNGVKFDPQSGS 106 (284)
Q Consensus 40 V~nLp~~~te~~L~~~F------------~~~G~v~~v~~~~~~~~~-~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~ 106 (284)
+.||+..+++++|++.| ++||.|.+|+|..+..++ ++||||+|.+.++|.+|+..|||..+. ||
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~---Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN---GQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET---TE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC---CE
Confidence 67788888888777666 999999999998443221 339999999999999999999999998 99
Q ss_pred eEEEEEe
Q 023320 107 VLHIELA 113 (284)
Q Consensus 107 ~l~v~~a 113 (284)
.|+|.|+
T Consensus 97 ~i~v~~s 103 (104)
T 1jmt_A 97 PIHAELS 103 (104)
T ss_dssp ECCEEEC
T ss_pred EEEEEEc
Confidence 9999986
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=4.5e-12 Score=92.21 Aligned_cols=78 Identities=13% Similarity=0.178 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCcc----------cHHHHHHHhhcCCCeeEEEEeeeC-CCCeeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 33 NGINTLFVSGLPDDV----------RAREIHNLFRRKPGFDFCQLKYTG-RGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~v~~v~~~~~~-~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
.++++|.+.|+=..- .++||++.|++||.|.+|.|..+. +| +|||+|.+.++|.+|++.|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G---~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG---NVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTC---CEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcE---EEEEEECCHHHHHHHHHHhCCCEEC
Confidence 358899999985432 234789999999999999886322 34 9999999999999999999999998
Q ss_pred CCCCCeEEEEEeecC
Q 023320 102 PQSGSVLHIELARSN 116 (284)
Q Consensus 102 ~~~g~~l~v~~a~~~ 116 (284)
||.|++.|+...
T Consensus 82 ---GR~i~v~~~~~~ 93 (114)
T 3s6e_A 82 ---GKMITAAYVPLP 93 (114)
T ss_dssp ---TEECEEEEECHH
T ss_pred ---CEEEEEEEEcHH
Confidence 999999998644
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=2.8e-11 Score=88.17 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=65.7
Q ss_pred CCCCCeEEEcCCCCc-ccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecC-HHHHHHHHHHh--CCCeeCCCCCCe
Q 023320 32 DNGINTLFVSGLPDD-VRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVN-HQTAVAALHEL--NGVKFDPQSGSV 107 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~-~~~A~~A~~~l--~g~~~~~~~g~~ 107 (284)
-.++..|||+||+.. +++++|+++|+.||.|..|.+. .++. .|||.|.+ .++|..|+..+ +|..|. |..
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~-~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~---g~~ 87 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFV-RGAK---EGIILFKEKAKEALGKAKDANNGNLQLR---NKE 87 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECC-TTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTT---SSS
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCCC---EEEEEECCChHHHHHHHHHhhcCCcEEe---CcE
Confidence 345899999999999 9999999999999999999998 3334 79999999 89999999999 477776 888
Q ss_pred EEEEEee
Q 023320 108 LHIELAR 114 (284)
Q Consensus 108 l~v~~a~ 114 (284)
++++...
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.3e-11 Score=84.73 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCCCcCeEEEeCCCCC-----CCH----HHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCC
Q 023320 196 GGVQPCSTLFIANLGPN-----CTE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPS 266 (284)
Q Consensus 196 ~~~~~~~~L~v~nL~~~-----~t~----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~ 266 (284)
...||..||+|..++.+ +.+ .+|.+.|++||+|..+++..++ +||+|.+.++|.+||+ |||..+.+
T Consensus 10 ~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 10 FQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred ecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 44577889999888743 333 4788899999999999999876 9999999999999999 99999998
Q ss_pred CCCCcEEEEEe
Q 023320 267 SDRGGMHIEYA 277 (284)
Q Consensus 267 ~~~~~l~v~~a 277 (284)
| .|+|.+-
T Consensus 85 r---~L~V~~k 92 (95)
T 1ufw_A 85 R---AVKISGP 92 (95)
T ss_dssp E---EEEEECC
T ss_pred e---EEEEecc
Confidence 8 9999873
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=8.6e-11 Score=80.33 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCC----c-ccH---HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCC
Q 023320 32 DNGINTLFVSGLPD----D-VRA---REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQ 103 (284)
Q Consensus 32 ~~~~~~lfV~nLp~----~-~te---~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~ 103 (284)
.+|-.||+|.-++. . .++ .+|.+.|++||.|..+++. .+ .+||+|.+.++|.+|++ |+|..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~---~d---~~fVtF~d~~sAlaAi~-mnG~~v~-- 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV---ED---KMWVTFLEGSSALNVLS-LNGKELL-- 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC---SS---SEEEEESSHHHHHHGGG-GTTCEET--
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe---cC---CEEEEECChHHHHHHHh-cCCeEeC--
Confidence 34567888888762 2 232 4788999999999999998 45 59999999999999998 9999998
Q ss_pred CCCeEEEEEeecC
Q 023320 104 SGSVLHIELARSN 116 (284)
Q Consensus 104 ~g~~l~v~~a~~~ 116 (284)
||.|+|++++..
T Consensus 75 -Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 -NRTITIALKSPS 86 (91)
T ss_dssp -TEEEEEEECCCS
T ss_pred -CeEEEEEeCCCC
Confidence 999999988654
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.01 E-value=1.6e-09 Score=88.45 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=62.6
Q ss_pred cCeEEEeCCC-----CCCCHHHHHHHhccCCCceEEEEEee--------CCcCeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 023320 201 CSTLFIANLG-----PNCTEDELKQTLSVYPGFNMLKMRAR--------GGMPVAFADFEEVEQASIAMEGLQDSTLPSS 267 (284)
Q Consensus 201 ~~~L~v~nL~-----~~~t~~~L~~~F~~~G~v~~v~~~~~--------~~~~~afV~f~~~e~A~~A~~~lng~~~~~~ 267 (284)
.+.+.+.|+- ..-.+++|++.|++||.|.+|.+... .++|++||+|.+.++|.+|++.|||+.+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 3455555554 33467799999999999999998752 4568999999999999999999999999988
Q ss_pred CCCcEEEEEee
Q 023320 268 DRGGMHIEYAR 278 (284)
Q Consensus 268 ~~~~l~v~~ak 278 (284)
.|.++|+-
T Consensus 204 ---~i~~~~~~ 211 (222)
T 3dxb_A 204 ---KVVAEVYD 211 (222)
T ss_dssp ---BCEEEECC
T ss_pred ---EEEEEEcC
Confidence 99999974
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.3e-09 Score=74.84 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=60.7
Q ss_pred CCCCCeEEEcCCCCc------ccH---HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCC
Q 023320 32 DNGINTLFVSGLPDD------VRA---REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDP 102 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~------~te---~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~ 102 (284)
.+|-.||+|.-++.. .++ .+|.+.|++||.|..+++. .+ -+||+|.+.++|.+||+ |+|..+.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v---~d---~~fVtF~d~~sAl~AI~-ldG~~v~- 83 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN---QG---QMLVTFADSHSALSVLD-VDGMKVK- 83 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE---TT---EEEEECSCSHHHHHHHH-GGGSEET-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEe---cC---cEEEEEcChHHHHHHHh-cCCeeeC-
Confidence 456788999988732 232 4688999999999999998 45 59999999999999998 9999998
Q ss_pred CCCCeEEEEEe
Q 023320 103 QSGSVLHIELA 113 (284)
Q Consensus 103 ~~g~~l~v~~a 113 (284)
||.|+|++-
T Consensus 84 --Gr~L~V~~k 92 (95)
T 1ufw_A 84 --GRAVKISGP 92 (95)
T ss_dssp --TEEEEEECC
T ss_pred --CeEEEEecc
Confidence 999999864
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=7.3e-08 Score=78.49 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=55.9
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeeeCCC------CeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEeec
Q 023320 47 VRAREIHNLFRRKPGFDFCQLKYTGRG------NQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELARS 115 (284)
Q Consensus 47 ~te~~L~~~F~~~G~v~~v~~~~~~~~------~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~ 115 (284)
-.+++|++.|++||.|.++.|..+..+ ..+++||+|.+.++|.+|++.|+|..+. ||.|++.+...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~---gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA---GRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS---SSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC---CeEEEEEEcCH
Confidence 456789999999999999988743222 1239999999999999999999999998 99999999753
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.55 E-value=3.5e-07 Score=64.05 Aligned_cols=71 Identities=11% Similarity=0.014 Sum_probs=65.3
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccC-----CCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVY-----PGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~-----G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.++|-|=|||+.++++.|+.+.+.+ |+++.+.++.+. +=|+|+|.+...|.+|.-+|||.+|.++ +|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~gr---~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQGK---VIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEETTE---EEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeecCe---EEEec
Confidence 6789999999999999999999999 999999999854 4599999999999999999999999988 88876
Q ss_pred E
Q 023320 276 Y 276 (284)
Q Consensus 276 ~ 276 (284)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=6.8e-07 Score=62.57 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcC-----CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRK-----PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLH 109 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~-----G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~ 109 (284)
.++|-+-|||..++...|+.+.+.+ |.+..+.+.-+.. =|+|+|.+...|-+|.-.|+|..|. |+.|+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~---gr~Lr 93 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQ---GKVIR 93 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEET---TEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeec---CeEEE
Confidence 5899999999999999999999999 9998888874333 4999999999999999999999998 99999
Q ss_pred EEE
Q 023320 110 IEL 112 (284)
Q Consensus 110 v~~ 112 (284)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 873
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.22 E-value=1.2e-06 Score=61.09 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=62.0
Q ss_pred cCeEEEeCCCCCC-CH----HHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 201 CSTLFIANLGPNC-TE----DELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 201 ~~~L~v~nL~~~~-t~----~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
.++|+|-||+..+ .. +.++.+|..|+++......+.- .-..|.|.++++|.+|...|+|..+.|+ .|+|=
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFLGK---EMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEETTE---ECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceecCc---eeEEE
Confidence 5689999998755 22 5778899999999988877733 2489999999999999999999999977 99999
Q ss_pred Eee
Q 023320 276 YAR 278 (284)
Q Consensus 276 ~ak 278 (284)
|+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 985
No 384
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.20 E-value=1.1e-05 Score=55.36 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=46.1
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
.+.++| ++|..+...||.++|+.||.|.--.|. .+ .|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TT---EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CC---eEEEEecCHHHHHHHHHhcc
Confidence 466777 999999999999999999987422333 56 89999999999999999764
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.19 E-value=1.2e-05 Score=55.08 Aligned_cols=77 Identities=17% Similarity=0.310 Sum_probs=63.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCC------cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC--cEE
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGG------MPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GMH 273 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~------~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~--~l~ 273 (284)
+.|.|++||+++|++++.+.++....+.....+.++. -.-|+|.|.+.+++..-.+.++|..+.+.-|. +-.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4689999999999999999999999887777766321 12799999999999999999999998877333 335
Q ss_pred EEEee
Q 023320 274 IEYAR 278 (284)
Q Consensus 274 v~~ak 278 (284)
|+||-
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77764
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.10 E-value=2.6e-05 Score=53.50 Aligned_cols=78 Identities=15% Similarity=0.300 Sum_probs=59.6
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCC-CC---eeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeE--E
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGR-GN---QVVAFATFVNHQTAVAALHELNGVKFDPQSGSVL--H 109 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~-~~---~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l--~ 109 (284)
.+|.|++||..+||+++.+.++..+.+......-... .+ -.-|||.|.+.+++....+.++|..+....|... .
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 4799999999999999999999998887766651110 11 1199999999999999999999999974444422 3
Q ss_pred EEEe
Q 023320 110 IELA 113 (284)
Q Consensus 110 v~~a 113 (284)
|++|
T Consensus 82 VE~A 85 (91)
T 1uw4_A 82 VEFA 85 (91)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4544
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.03 E-value=2.5e-05 Score=53.56 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=46.6
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
..+++| +.|+.+...||.++|+.||.|. |+-+.+ ..|||.|.+++.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD---TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD---TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET---TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 678888 9999999999999999999654 343434 369999999999999999874
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.89 E-value=1.6e-05 Score=54.72 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=44.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
+.++| ++|..+...||.++|+.||.|. |.--+.+ .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999999663 3322256 89999999999999999774
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.83 E-value=3.3e-05 Score=53.87 Aligned_cols=74 Identities=22% Similarity=0.185 Sum_probs=61.6
Q ss_pred CeEEEcCCCCcc-cH----HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEE
Q 023320 36 NTLFVSGLPDDV-RA----REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHI 110 (284)
Q Consensus 36 ~~lfV~nLp~~~-te----~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v 110 (284)
.+|+|.||+.++ +. +.++.+|..|+++........-| -.-|.|.+.++|.+|-..|++..+. |+.++|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~---g~~~r~ 78 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFL---GKEMKL 78 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEET---TEECEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceec---CceeEE
Confidence 679999999876 32 45689999999987777662222 4799999999999999999999998 999999
Q ss_pred EEeecC
Q 023320 111 ELARSN 116 (284)
Q Consensus 111 ~~a~~~ 116 (284)
-+++..
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999843
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=9.6e-05 Score=51.30 Aligned_cols=54 Identities=11% Similarity=0.031 Sum_probs=47.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhcc---CC--CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHH
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSV---YP--GFNMLKMRARGGMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~---~G--~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ 258 (284)
.++|.|.|||+.++++.|.-.|+. -| +|..|.... +-|+|+|.+.+.|++.++.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 779999999999999999999987 23 677887765 3599999999999999976
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.76 E-value=1.8e-05 Score=54.49 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQ 260 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ln 260 (284)
..+++| +.|+.+...||.++|+.||+| .|+-+.+ ..|||.|.+++.|..|++.+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD---TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET---TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC---CeEEEEecCHHHHHHHHHhcc
Confidence 567888 999999999999999999943 3443444 369999999999999999885
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.67 E-value=7.6e-05 Score=51.45 Aligned_cols=78 Identities=17% Similarity=0.286 Sum_probs=59.4
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeC-C-----cCeEEEEeCCHHHHHHHHHHhCCCccCCCCCC--cE
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARG-G-----MPVAFADFEEVEQASIAMEGLQDSTLPSSDRG--GM 272 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~-~-----~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~--~l 272 (284)
+-.|.|+.||+.+|++++.+.++..-++.....+.++ + -.-|+|.|.+.++...-.+.++|..+-+.-|. +-
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 4579999999999999999888876665444443311 1 12699999999999999999999998877233 55
Q ss_pred EEEEee
Q 023320 273 HIEYAR 278 (284)
Q Consensus 273 ~v~~ak 278 (284)
.|+||-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 577764
No 393
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=0.001 Score=46.19 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=56.8
Q ss_pred CCCCeEEEcCCCCcccHHHHHHHhhc---C--CCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCe
Q 023320 33 NGINTLFVSGLPDDVRAREIHNLFRR---K--PGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSV 107 (284)
Q Consensus 33 ~~~~~lfV~nLp~~~te~~L~~~F~~---~--G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~ 107 (284)
.-.++|.|.|||..+.++.|.-+|+. - |+|..++.. .+ -|+|+|.+.+.|++.++. ....+. +..
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~---~~---~AvItF~d~~va~rVL~k-~~H~L~---~~~ 75 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL---GC---GGVLTFREPADAERVLAQ-ADHELH---GAQ 75 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE---TT---EEEEEESSHHHHHHHHTC-SCCBSS---SSB
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc---CC---cEEEEEcChHHHHHHhcC-Ccceec---CeE
Confidence 34689999999999999999999987 2 457777776 34 799999999999999863 245555 778
Q ss_pred EEEEEee
Q 023320 108 LHIELAR 114 (284)
Q Consensus 108 l~v~~a~ 114 (284)
|.|....
T Consensus 76 LsV~P~~ 82 (104)
T 2dhx_A 76 LSLRPAP 82 (104)
T ss_dssp CEEEECC
T ss_pred EEEEcCC
Confidence 8886543
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.60 E-value=0.00013 Score=50.22 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCee----EEEEEecCHHHHHHHHHHhCCCeeCCCCCC--eE
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQV----VAFATFVNHQTAVAALHELNGVKFDPQSGS--VL 108 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~----~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~--~l 108 (284)
+.+|.|+.||+.+||+++.+.++.+-.+......-.+-..++ -|||.|.+.++.....+.++|..+....|. +.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 578999999999999999888877665544333200000011 899999999999999999999999744444 33
Q ss_pred EEEEe
Q 023320 109 HIELA 113 (284)
Q Consensus 109 ~v~~a 113 (284)
.|++|
T Consensus 89 ~VE~A 93 (97)
T 2l08_A 89 VVEFA 93 (97)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 34444
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.42 E-value=0.00057 Score=48.97 Aligned_cols=61 Identities=8% Similarity=-0.012 Sum_probs=52.5
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
.+.|.|-+.|+.. -..+...|++||+|.+... ..+.++-.|+|.+..+|++||. .||..|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 6788888999885 6788889999999988876 3345799999999999999998 5999997
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.01 E-value=0.00034 Score=62.37 Aligned_cols=55 Identities=7% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHH
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALH 93 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~ 93 (284)
.|+|||. .|..+++.+|.++|++||.|..+... +.++.||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~---~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFY---ESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE---CSSSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE---ccCCeEEEEEeCCHHHHHHHHh
Confidence 4889998 79999999999999999999888776 3344599999999999997764
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.0071 Score=43.28 Aligned_cols=62 Identities=18% Similarity=0.102 Sum_probs=50.5
Q ss_pred CCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeC
Q 023320 34 GINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFD 101 (284)
Q Consensus 34 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~ 101 (284)
....|-|-+.|... .+.+.+.|++||.|.+.... ...+ .-.|.|.+..+|++||. .||..+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~-~~~N---WihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS-NTGN---WMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC-SSSS---EEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC-CCCC---eEEEEeCCHHHHHHHHH-hCCeEec
Confidence 35789999999985 56778899999999776652 2233 99999999999999996 6999984
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.82 E-value=0.00061 Score=60.79 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=43.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHH
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEG 258 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~ 258 (284)
.+.|||. .+..+++.+|.+.|++||.|.++.+..+.+ -||.|+|.+.++++.++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 6899997 799999999999999999999999887542 4999999999999976543
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.51 E-value=0.0085 Score=43.51 Aligned_cols=72 Identities=4% Similarity=-0.013 Sum_probs=51.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceE-EEEEe----------------e-CCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNM-LKMRA----------------R-GGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~-v~~~~----------------~-~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
...+.|-+.|++. ...+.+.|++||.|.+ +...+ . .+.++.-|+|++..+|++||. -||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3456666787764 5677788999998865 21110 0 134699999999999999997 7899
Q ss_pred ccCCCCCCcEEEEEe
Q 023320 263 TLPSSDRGGMHIEYA 277 (284)
Q Consensus 263 ~~~~~~~~~l~v~~a 277 (284)
.|.|. -|-|...
T Consensus 85 ii~G~---mIGV~Py 96 (132)
T 3p3d_A 85 VFNGV---LLGVIPY 96 (132)
T ss_dssp EETTE---ECEEEEC
T ss_pred EeCcE---EEEEEEC
Confidence 99844 6666554
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.87 E-value=0.072 Score=48.34 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=45.3
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhC
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHELN 96 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~ 96 (284)
...++|+ +|..+...+|.++|+.||.|. | .--+++ .|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V--~widdt---~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-I--SWIDDT---SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-E--EECSSS---EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-E--EEEcCC---eEEEEECCHHHHHHHHHHHH
Confidence 4667776 899999999999999999763 3 322356 89999999999999999885
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.83 E-value=0.061 Score=39.01 Aligned_cols=72 Identities=22% Similarity=0.299 Sum_probs=51.8
Q ss_pred CCeEEEcCCCCcccHHHHHHHhhcCCCeeE-EEEe------------------eeCCCCeeEEEEEecCHHHHHHHHHHh
Q 023320 35 INTLFVSGLPDDVRAREIHNLFRRKPGFDF-CQLK------------------YTGRGNQVVAFATFVNHQTAVAALHEL 95 (284)
Q Consensus 35 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~-v~~~------------------~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (284)
...|.|-+.|.+... .+.+.|++||.|.+ +... +...+ .--|+|.+..+|.+|+. .
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~N---WikItYds~~~A~rAL~-~ 81 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNS---WTKITYDNPASAVDALL-E 81 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETT---EEEEEBSSHHHHHHHHT-T
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCc---EEEEEcCCHHHHHHHHH-h
Confidence 456788888877554 56678999999854 2111 01122 88999999999999996 7
Q ss_pred CCCeeCCCCCCeEEEEEee
Q 023320 96 NGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 96 ~g~~~~~~~g~~l~v~~a~ 114 (284)
||..|. |..|-|.+..
T Consensus 82 NG~ii~---G~mIGV~Py~ 97 (132)
T 3p3d_A 82 NGAVFN---GVLLGVIPYT 97 (132)
T ss_dssp TTCEET---TEECEEEECC
T ss_pred CCeEeC---cEEEEEEECC
Confidence 999997 7766676653
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.62 E-value=0.17 Score=45.86 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=47.0
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
..+++|+ ++..+...+|.++|+.||.+ +|+-+.+ ..|||.|.+.++|..++++++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd---t~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD---TSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS---SEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC---CeEEEEECCHHHHHHHHHHHHhC
Confidence 5688887 99999999999999999954 4444434 36999999999999999999643
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=83.81 E-value=3.2 Score=26.64 Aligned_cols=67 Identities=10% Similarity=0.280 Sum_probs=43.7
Q ss_pred eEEEeCCC--CCCCHHHHHHHhccCCCc-----eEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccCCCCCCcEEEE
Q 023320 203 TLFIANLG--PNCTEDELKQTLSVYPGF-----NMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLPSSDRGGMHIE 275 (284)
Q Consensus 203 ~L~v~nL~--~~~t~~~L~~~F~~~G~v-----~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~~~~~~~l~v~ 275 (284)
+||| |+. ..++..+|..++..-+++ -.+++... |.||+-... .|.++++.|++..+.++ .++|+
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g~---~~~v~ 72 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKGK---QLKVN 72 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC------CCCEE
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcCc---eEEEE
Confidence 5666 454 367777888888766654 44555433 689988664 47789999999999988 99888
Q ss_pred Eee
Q 023320 276 YAR 278 (284)
Q Consensus 276 ~ak 278 (284)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=73.66 E-value=10 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=38.9
Q ss_pred ccHHHHHHHhhcCCCe-----eEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHhCCCeeCCCCCCeEEEEEee
Q 023320 47 VRAREIHNLFRRKPGF-----DFCQLKYTGRGNQVVAFATFVNHQTAVAALHELNGVKFDPQSGSVLHIELAR 114 (284)
Q Consensus 47 ~te~~L~~~F~~~G~v-----~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~ 114 (284)
++..+|..++..-+.+ -.|++. .+ |.||+-.. +.|..++..|++..+. |+.+.++.++
T Consensus 13 ~~p~~ivg~i~~~~gi~~~~IG~I~i~---d~---~s~v~v~~-~~~~~~~~~l~~~~i~---g~~~~v~~~~ 75 (76)
T 2g0c_A 13 IRAVDFVGTIAKIDGVSADDIGIITIM---DN---ASYVEILN-GKGPHVLKVMKNTTVK---GKQLKVNKAN 75 (76)
T ss_dssp --CHHHHHHHHTSTTCCGGGEEEEEEC---SS---CEEEEECT-TCHHHHHHHHTTCCC------CCCEEECC
T ss_pred CCHHHHHHHHHHccCCChhhccEEEEe---CC---cEEEEECH-HHHHHHHHHhccccCc---CceEEEEECC
Confidence 5556777766655554 445554 55 89999876 4688899999999998 9999888653
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.67 E-value=28 Score=23.08 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=47.1
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
++-|-|-|+|..+-..++.-.....|---.++...++ |.+.|.+.++..-|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidgq----amirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQ----AMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSC----EEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCe----eEEEecCChHHHHHHHHH
Confidence 5667788999999999988888888876677777776 999999999999999887
No 406
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=56.44 E-value=22 Score=21.83 Aligned_cols=59 Identities=19% Similarity=0.165 Sum_probs=45.8
Q ss_pred cCeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCc
Q 023320 201 CSTLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDST 263 (284)
Q Consensus 201 ~~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~ 263 (284)
..++.|.|+...--...+...+.. .+|..+.+.... +-+.|+|.+.++...+++.+ |+.
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~--~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE--AVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE--EEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC--CEEEEEECCHHHHHHHHHHc-CCc
Confidence 457889999999889999999999 999888765422 35788888777777777765 443
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=56.27 E-value=25 Score=26.62 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=34.5
Q ss_pred EEEcCCCCc---------ccHHHHHHHh--hcCCCeeEEEEeeeCCCCeeEEEEEecCHHH
Q 023320 38 LFVSGLPDD---------VRAREIHNLF--RRKPGFDFCQLKYTGRGNQVVAFATFVNHQT 87 (284)
Q Consensus 38 lfV~nLp~~---------~te~~L~~~F--~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~ 87 (284)
+.|-|+|.. ....+|++.| +.|.++. |+.....+++.++|.|.|.+.-.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChH
Confidence 456666651 3446889977 9999984 55555667766699999987543
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=53.44 E-value=26 Score=26.52 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=33.5
Q ss_pred eEEEeCCCC---------CCCHHHHHHHh--ccCCCceEEEEEee-CCcCeEEEEeCCH
Q 023320 203 TLFIANLGP---------NCTEDELKQTL--SVYPGFNMLKMRAR-GGMPVAFADFEEV 249 (284)
Q Consensus 203 ~L~v~nL~~---------~~t~~~L~~~F--~~~G~v~~v~~~~~-~~~~~afV~f~~~ 249 (284)
+..|-|++. .....+|++.| +.|..+....+... ...++|.|+|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCC
Confidence 455668886 25567999977 99999876666553 3346999999763
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=52.92 E-value=47 Score=21.98 Aligned_cols=58 Identities=17% Similarity=0.178 Sum_probs=48.3
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEecCHHHHHHHHHHh
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFVNHQTAVAALHEL 95 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~~~~~A~~A~~~l 95 (284)
-..++-|-|-|+|..+-..++.-.....|---.|..+ .| .|.+.|.+.++-..|+..|
T Consensus 9 ikqnclikiinipqgtlkaevvlavrhlgyefycdyi---dg---qamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DG---QAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SS---CEEEEESSHHHHHHHHHHH
T ss_pred hhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cC---eeEEEecCChHHHHHHHHH
Confidence 4467889999999999888887777788876677777 66 7999999999999999865
No 410
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=39.87 E-value=59 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=24.2
Q ss_pred CCCCCeEEEcCCCCcccHHHHHHHhhcCCCe
Q 023320 32 DNGINTLFVSGLPDDVRAREIHNLFRRKPGF 62 (284)
Q Consensus 32 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~v 62 (284)
.+...-+|+|++...=..+.|.+.|.....+
T Consensus 21 ~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~ 51 (177)
T 2f9f_A 21 CYGDFWLSVNRIYPEKRIELQLEVFKKLQDE 51 (177)
T ss_dssp CCCSCEEEECCSSGGGTHHHHHHHHHHCTTS
T ss_pred CCCCEEEEEeccccccCHHHHHHHHHhCCCc
Confidence 4455789999998887888888888887443
No 411
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=38.67 E-value=64 Score=19.43 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=44.0
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC----CHHHHHHHHHHh
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE----EVEQASIAMEGL 259 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~----~~e~A~~A~~~l 259 (284)
.++.|.|+...--...+...+....+|..+.+.... +-+.|+|. +.++...+++.+
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ--NRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG--TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHC
Confidence 467889999887788999999999999888876533 46889985 567777887765
No 412
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=36.54 E-value=17 Score=29.83 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=26.8
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEee
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLKY 69 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~ 69 (284)
..+.|+||||.++..-|.++++....+..+.+++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~ 148 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFML 148 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEe
Confidence 4579999999999999999998655565555553
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.73 E-value=33 Score=27.99 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.7
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
.-+.|+|||+.++..-|.++++. +.+..+.++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45799999999999999999987 666555444
No 414
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=40.32 E-value=8.5 Score=26.65 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.6
Q ss_pred ccHHHHHHHhhcCCCeeEEEEeeeCCCCee---EEEEEecCHHHHHHHHHHhCCCe
Q 023320 47 VRAREIHNLFRRKPGFDFCQLKYTGRGNQV---VAFATFVNHQTAVAALHELNGVK 99 (284)
Q Consensus 47 ~te~~L~~~F~~~G~v~~v~~~~~~~~~~~---~aFV~F~~~~~A~~A~~~l~g~~ 99 (284)
.++++|..+..+.+ +..+.+....++++. .-+=.|.+.++|.+|+..|....
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 45666777777776 344555533344444 34458999999999999875433
No 415
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=33.05 E-value=1.3e+02 Score=21.30 Aligned_cols=50 Identities=8% Similarity=-0.020 Sum_probs=32.9
Q ss_pred HHHHHHHhccCC-CceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHhCCCccC
Q 023320 215 EDELKQTLSVYP-GFNMLKMRARGGMPVAFADFEEVEQASIAMEGLQDSTLP 265 (284)
Q Consensus 215 ~~~L~~~F~~~G-~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~lng~~~~ 265 (284)
-.++..++...| +|..+.......+..+.+++++.+.|.++++. .|..+.
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~ 136 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLL 136 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEe
Confidence 356667777666 55454433234456778899999999999887 566553
No 416
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=32.33 E-value=60 Score=19.18 Aligned_cols=56 Identities=11% Similarity=0.155 Sum_probs=41.6
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC---CHHHHHHHHHHh
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE---EVEQASIAMEGL 259 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~---~~e~A~~A~~~l 259 (284)
.++.|.|+...--...+...+....+|..+.+.... +-+.|+|. +.++..++++.+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~i~~~i~~~ 62 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFAL--EQAVVSYHGETTPQILTDAVERA 62 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEECTTCCHHHHHHHHHHT
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecC--CEEEEEECCCCCHHHHHHHHHHc
Confidence 467899999887888999999999999888876543 45788884 445556666543
No 417
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=32.24 E-value=65 Score=22.92 Aligned_cols=36 Identities=14% Similarity=-0.028 Sum_probs=23.4
Q ss_pred CCCceEEEEEeeCCcCeEEEE-eCCHHHHHHHHHHhC
Q 023320 225 YPGFNMLKMRARGGMPVAFAD-FEEVEQASIAMEGLQ 260 (284)
Q Consensus 225 ~G~v~~v~~~~~~~~~~afV~-f~~~e~A~~A~~~ln 260 (284)
+=.|..|++-.+-+...+||. |-+.++...++++|+
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~~~~~~~~~~~~~~L~ 79 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKTTLSAEQNAHMEAVLQ 79 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECCCSCHHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCcEEEEEEEecCChhhHHHHHHHHH
Confidence 347888888887755567777 666555555555443
No 418
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=28.88 E-value=26 Score=17.99 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=9.2
Q ss_pred CCCeEEEcCCCC
Q 023320 34 GINTLFVSGLPD 45 (284)
Q Consensus 34 ~~~~lfV~nLp~ 45 (284)
..++|||++-|.
T Consensus 4 qvrtiwvggtpe 15 (36)
T 2ki0_A 4 QVRTIWVGGTPE 15 (36)
T ss_dssp SCCCCCBCCCHH
T ss_pred eeEEEEecCCHH
Confidence 468999998554
No 419
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.83 E-value=8.9 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCeeEEEEeeeCCCCeeEEEEEec
Q 023320 50 REIHNLFRRKPGFDFCQLKYTGRGNQVVAFATFV 83 (284)
Q Consensus 50 ~~L~~~F~~~G~v~~v~~~~~~~~~~~~aFV~F~ 83 (284)
+|+.++|...|.|.... ..++ ||||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~~kG---fGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---VRMG---FGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---TTTT---EEEEEEE
T ss_pred CcccccccceeEEEEEE---CCCC---eeEEeeC
Confidence 45667788888775433 3477 9999875
No 420
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=28.72 E-value=24 Score=28.53 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=25.3
Q ss_pred eEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 37 TLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 37 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
-..|+|||+.++...|..+++..+.+..+.++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34899999999999999999876666555554
No 421
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=27.51 E-value=96 Score=18.03 Aligned_cols=56 Identities=9% Similarity=0.154 Sum_probs=40.9
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC----CHHHHHHHHHHh
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE----EVEQASIAMEGL 259 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~----~~e~A~~A~~~l 259 (284)
.+|.|.++...--...+...+....+|..+.+.... +.+.|.|. +.++...+++.+
T Consensus 7 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAE--GTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHc
Confidence 457899988876677888899988888888766533 56888886 345556666655
No 422
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=26.84 E-value=93 Score=17.65 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC---CHHHHHHHHHHh
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE---EVEQASIAMEGL 259 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~---~~e~A~~A~~~l 259 (284)
++.|.|+....-...+...+....+|..+.+.... +.+.|+|. +.++..++++.+
T Consensus 4 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEK--KSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTT--TEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCC--CEEEEEECCCCCHHHHHHHHHHc
Confidence 46677888777778888999988888888765533 56788886 455556666655
No 423
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=24.45 E-value=53 Score=26.32 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=24.3
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
..+.|+|||+.++...|..+++....+..+.++
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m 123 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFM 123 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEE
Confidence 468999999999999998888754444444333
No 424
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=23.97 E-value=42 Score=28.59 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=19.6
Q ss_pred CeEEEcCCCCcccHHHHHHHhhc
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRR 58 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~ 58 (284)
....|+|||+.++..-|..+++.
T Consensus 143 ~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 143 KFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEEECCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCchHHHHHHHHHHh
Confidence 35799999999999988888874
No 425
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=23.46 E-value=52 Score=26.28 Aligned_cols=33 Identities=21% Similarity=0.192 Sum_probs=25.3
Q ss_pred CeEEEcCCCCcccHHHHHHHhhcCCCeeEEEEe
Q 023320 36 NTLFVSGLPDDVRAREIHNLFRRKPGFDFCQLK 68 (284)
Q Consensus 36 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~ 68 (284)
..+.|+|||+.++..-|..+++....+..+.++
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m 128 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAVFM 128 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEEEE
Confidence 458999999999999999998865445444444
No 426
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=23.41 E-value=87 Score=21.07 Aligned_cols=54 Identities=11% Similarity=0.148 Sum_probs=33.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhccC-------CC-ceEEEEEe---------eCCcC-eEEEEeCCHHHHHHHHHH
Q 023320 203 TLFIANLGPNCTEDELKQTLSVY-------PG-FNMLKMRA---------RGGMP-VAFADFEEVEQASIAMEG 258 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~-------G~-v~~v~~~~---------~~~~~-~afV~f~~~e~A~~A~~~ 258 (284)
++|| |.++++++++..+.+.| |+ |..+.... +..+| |.++.|....++..-++.
T Consensus 6 ~~~I--l~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler 77 (101)
T 1cqm_A 6 VNIV--LNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR 77 (101)
T ss_dssp EEEE--ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH
Confidence 3455 46677888777655444 43 44544321 22344 899999888777776654
No 427
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=23.33 E-value=1.5e+02 Score=18.81 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=42.3
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC----CHHHHHHHHHHh
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE----EVEQASIAMEGL 259 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~----~~e~A~~A~~~l 259 (284)
.+|.|.++....-...+...+....+|..+.+.... ..+.|+|. +.++...+++.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~--~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLEN--RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTT--TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccC--CEEEEEECCCCCCHHHHHHHHHhc
Confidence 357788888777777899999999899888876543 56888885 356667777766
No 428
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=22.81 E-value=1.2e+02 Score=17.47 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=40.5
Q ss_pred CeEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCC---HHHHHHHHHHh
Q 023320 202 STLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEE---VEQASIAMEGL 259 (284)
Q Consensus 202 ~~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~---~e~A~~A~~~l 259 (284)
.++.|.|+...--...+...+....+|..+.+.... +.+.|.|.. .++...+++.+
T Consensus 5 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACASSIERAIAKVPGVQSCQVNFAL--EQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccC--CEEEEEECCCCCHHHHHHHHHHc
Confidence 357788888876777889999998899888876543 568888873 44555666655
No 429
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=20.82 E-value=1.3e+02 Score=17.33 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=40.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC----CHHHHHHHHHHh
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE----EVEQASIAMEGL 259 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~----~~e~A~~A~~~l 259 (284)
++.|.++...--...+...+....+|..+.+.... +.+.|.|. +.++...+++.+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLAN--SNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTT--TEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccC--CEEEEEECCCcCCHHHHHHHHHHC
Confidence 57788888766667888888888888887765533 56888886 345666777665
No 430
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=20.73 E-value=1.3e+02 Score=17.10 Aligned_cols=55 Identities=13% Similarity=0.267 Sum_probs=41.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeC----CHHHHHHHHHHh
Q 023320 203 TLFIANLGPNCTEDELKQTLSVYPGFNMLKMRARGGMPVAFADFE----EVEQASIAMEGL 259 (284)
Q Consensus 203 ~L~v~nL~~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~----~~e~A~~A~~~l 259 (284)
++.|.|+...--...+...+....+|..+.+.... +.+.|+|. +.++...+++.+
T Consensus 3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~--~~~~v~~~~~~~~~~~i~~~i~~~ 61 (68)
T 1cpz_A 3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKK--EKAVVKFDEANVQATEICQAINEL 61 (68)
T ss_dssp EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTT--TEEEEEECTTTCCHHHHHHHHHTT
T ss_pred EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecC--CEEEEEECCCCCCHHHHHHHHHHc
Confidence 57888998887788899999998889888766543 56888886 345555666554
No 431
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.62 E-value=69 Score=29.76 Aligned_cols=53 Identities=8% Similarity=0.028 Sum_probs=36.8
Q ss_pred CCCCCCHHHHHHHhc----cCCCceEEEEEe---eCCcCeEEEEeCCHHHHHHHHHHhCC
Q 023320 209 LGPNCTEDELKQTLS----VYPGFNMLKMRA---RGGMPVAFADFEEVEQASIAMEGLQD 261 (284)
Q Consensus 209 L~~~~t~~~L~~~F~----~~G~v~~v~~~~---~~~~~~afV~f~~~e~A~~A~~~lng 261 (284)
.+.+.+-=||..+|- .+|-|+++.+.- ...+.++++.|.+.++|.+|+..+-.
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 344444447888873 566788777654 22234789999999999999987743
No 432
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=20.60 E-value=80 Score=20.87 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=21.2
Q ss_pred CCcCeEEEEeCCHHHHHHHHHHhCCC
Q 023320 237 GGMPVAFADFEEVEQASIAMEGLQDS 262 (284)
Q Consensus 237 ~~~~~afV~f~~~e~A~~A~~~lng~ 262 (284)
.-.||.||++...++.-.+++.+.|.
T Consensus 48 ~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 48 SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 45689999999999988888776553
No 433
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=20.32 E-value=1.5e+02 Score=22.32 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.6
Q ss_pred CHHHHHHHhccCCCceEEEEEeeCCcCeEEEEeCCHHHHHHHHHHh
Q 023320 214 TEDELKQTLSVYPGFNMLKMRARGGMPVAFADFEEVEQASIAMEGL 259 (284)
Q Consensus 214 t~~~L~~~F~~~G~v~~v~~~~~~~~~~afV~f~~~e~A~~A~~~l 259 (284)
.-++|+.+|+.|-..+ .+|.+.+-.|.+.+.|.+.++..
T Consensus 131 ~l~~i~~fF~~YK~le-------~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 131 LKKRIVHFFEHYKDLE-------KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHTTTTS-------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-------CCCcEEEccCcCHHHHHHHHHHH
Confidence 4578889999997664 24567888899999999988754
No 434
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.10 E-value=44 Score=20.77 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=7.1
Q ss_pred EEEEEecC
Q 023320 77 VAFATFVN 84 (284)
Q Consensus 77 ~aFV~F~~ 84 (284)
.|||.|.|
T Consensus 39 ~ClV~FeD 46 (68)
T 2e5p_A 39 VCLVQFED 46 (68)
T ss_dssp EEEEEETT
T ss_pred EEEEEEcc
Confidence 89999976
Done!