Query 023321
Match_columns 284
No_of_seqs 152 out of 1794
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:08:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 1.3E-33 2.9E-38 252.0 27.8 256 1-260 18-333 (358)
2 PRK11272 putative DMT superfam 100.0 5.8E-29 1.3E-33 218.0 26.7 241 2-258 14-288 (292)
3 PRK11689 aromatic amino acid e 100.0 2.6E-28 5.6E-33 214.2 23.6 240 2-257 10-289 (295)
4 PRK11453 O-acetylserine/cystei 100.0 1.2E-27 2.5E-32 210.5 26.4 235 2-258 10-290 (299)
5 PRK15430 putative chlorampheni 100.0 9.8E-28 2.1E-32 210.6 22.1 243 2-256 14-286 (296)
6 PRK10532 threonine and homoser 100.0 1E-26 2.3E-31 203.8 27.0 243 1-263 17-289 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 1.3E-26 2.8E-31 199.7 23.8 226 8-250 1-259 (260)
8 TIGR00817 tpt Tpt phosphate/ph 99.9 2.6E-23 5.6E-28 183.2 24.1 237 11-260 17-298 (302)
9 TIGR03340 phn_DUF6 phosphonate 99.9 2.4E-23 5.3E-28 181.5 22.9 237 2-252 7-280 (281)
10 TIGR00688 rarD rarD protein. T 99.9 8.2E-23 1.8E-27 175.8 20.8 214 1-230 7-255 (256)
11 PF06027 DUF914: Eukaryotic pr 99.9 5.6E-21 1.2E-25 167.8 24.1 238 4-262 21-312 (334)
12 PTZ00343 triose or hexose phos 99.9 9.3E-21 2E-25 169.8 26.0 234 9-256 62-349 (350)
13 COG0697 RhaT Permeases of the 99.9 1.2E-19 2.7E-24 158.0 25.9 245 2-256 13-288 (292)
14 COG2962 RarD Predicted permeas 99.9 9.9E-20 2.1E-24 153.1 21.9 247 2-258 13-286 (293)
15 COG5006 rhtA Threonine/homoser 99.8 1.4E-17 3E-22 136.8 20.5 212 11-259 27-286 (292)
16 KOG4510 Permease of the drug/m 99.8 7.9E-20 1.7E-24 150.9 4.8 241 5-260 46-330 (346)
17 TIGR00776 RhaT RhaT L-rhamnose 99.8 5E-17 1.1E-21 142.1 22.6 237 2-255 7-288 (290)
18 PF00892 EamA: EamA-like trans 99.6 1.5E-15 3.2E-20 115.8 9.9 124 6-139 1-125 (126)
19 COG2510 Predicted membrane pro 99.6 1.6E-15 3.5E-20 112.0 8.8 128 2-139 9-138 (140)
20 PF08449 UAA: UAA transporter 99.6 2.5E-13 5.5E-18 119.7 22.3 224 25-260 32-302 (303)
21 KOG2765 Predicted membrane pro 99.6 1.2E-13 2.5E-18 119.8 15.9 187 65-258 163-393 (416)
22 PF13536 EmrE: Multidrug resis 99.4 1.8E-12 4E-17 97.4 8.3 102 30-140 2-106 (113)
23 TIGR00950 2A78 Carboxylate/Ami 99.3 4E-11 8.6E-16 103.2 14.9 124 2-136 134-260 (260)
24 KOG1580 UDP-galactose transpor 99.2 8.3E-10 1.8E-14 90.4 14.9 183 64-254 88-312 (337)
25 KOG2234 Predicted UDP-galactos 99.2 2.7E-08 5.8E-13 86.7 24.4 252 2-260 21-327 (345)
26 KOG1441 Glucose-6-phosphate/ph 99.1 1.9E-10 4.2E-15 100.3 9.3 236 14-262 35-314 (316)
27 PRK10532 threonine and homoser 99.1 2.4E-09 5.2E-14 94.0 15.3 128 2-141 154-282 (293)
28 PRK11272 putative DMT superfam 99.1 1.9E-09 4E-14 94.6 14.4 128 2-139 156-284 (292)
29 PF04142 Nuc_sug_transp: Nucle 99.1 1.8E-08 3.8E-13 85.8 17.6 179 57-246 13-244 (244)
30 COG2510 Predicted membrane pro 99.0 2.4E-09 5.2E-14 79.5 8.1 70 186-255 70-139 (140)
31 PRK11689 aromatic amino acid e 99.0 1.4E-08 3E-13 89.2 13.6 124 2-139 162-286 (295)
32 KOG2766 Predicted membrane pro 99.0 8.2E-09 1.8E-13 85.6 11.1 233 10-258 32-302 (336)
33 PLN00411 nodulin MtN21 family 98.9 2.7E-08 5.9E-13 89.4 14.5 127 2-139 195-327 (358)
34 KOG1443 Predicted integral mem 98.9 6.6E-08 1.4E-12 82.3 13.4 221 25-255 45-315 (349)
35 PRK11453 O-acetylserine/cystei 98.9 1E-07 2.2E-12 83.9 15.3 129 2-139 149-286 (299)
36 PF06800 Sugar_transport: Suga 98.9 6.8E-07 1.5E-11 76.3 19.3 188 59-252 43-268 (269)
37 KOG1581 UDP-galactose transpor 98.8 2.8E-07 6.2E-12 78.5 16.1 224 24-259 50-317 (327)
38 PRK02971 4-amino-4-deoxy-L-ara 98.8 3.2E-08 7E-13 75.6 9.2 77 182-258 47-125 (129)
39 TIGR03340 phn_DUF6 phosphonate 98.8 1.2E-08 2.6E-13 89.0 7.8 126 2-137 150-280 (281)
40 PF00892 EamA: EamA-like trans 98.7 2.6E-08 5.6E-13 75.4 6.7 69 186-254 57-125 (126)
41 KOG1583 UDP-N-acetylglucosamin 98.7 3.8E-08 8.3E-13 82.6 8.1 219 26-258 34-317 (330)
42 KOG1444 Nucleotide-sugar trans 98.7 5.5E-06 1.2E-10 71.5 21.2 240 11-260 27-305 (314)
43 TIGR00817 tpt Tpt phosphate/ph 98.7 7.9E-08 1.7E-12 84.7 10.1 130 2-139 151-292 (302)
44 PRK15051 4-amino-4-deoxy-L-ara 98.7 3.1E-07 6.8E-12 68.5 11.4 70 64-139 39-108 (111)
45 PRK15430 putative chlorampheni 98.7 6.5E-07 1.4E-11 78.7 13.9 128 2-139 155-284 (296)
46 PF05653 Mg_trans_NIPA: Magnes 98.6 9.6E-07 2.1E-11 77.5 13.6 188 63-257 51-294 (300)
47 COG0697 RhaT Permeases of the 98.6 2.1E-06 4.7E-11 74.4 14.9 126 2-139 160-286 (292)
48 PTZ00343 triose or hexose phos 98.5 3.2E-06 7E-11 76.0 15.2 130 2-139 200-347 (350)
49 PRK15051 4-amino-4-deoxy-L-ara 98.5 5.1E-07 1.1E-11 67.3 8.1 65 190-254 44-108 (111)
50 PF03151 TPT: Triose-phosphate 98.5 4.9E-06 1.1E-10 65.5 14.2 128 2-138 6-151 (153)
51 PF13536 EmrE: Multidrug resis 98.5 1.4E-06 3.1E-11 65.2 9.4 69 189-258 41-109 (113)
52 TIGR00776 RhaT RhaT L-rhamnose 98.4 3.5E-06 7.6E-11 73.8 12.0 122 2-139 158-287 (290)
53 PRK10452 multidrug efflux syst 98.4 8.8E-06 1.9E-10 61.2 12.1 69 189-257 36-105 (120)
54 PRK09541 emrE multidrug efflux 98.3 2.2E-05 4.8E-10 58.2 11.9 69 189-257 36-105 (110)
55 KOG3912 Predicted integral mem 98.3 2.6E-05 5.5E-10 66.0 13.2 234 9-254 16-333 (372)
56 COG5006 rhtA Threonine/homoser 98.3 1.4E-05 3E-10 66.7 11.3 124 2-136 154-278 (292)
57 KOG4314 Predicted carbohydrate 98.3 4.4E-06 9.5E-11 67.1 7.8 177 73-257 64-278 (290)
58 PRK02971 4-amino-4-deoxy-L-ara 98.2 1.1E-05 2.4E-10 61.7 8.2 70 64-139 50-121 (129)
59 KOG1582 UDP-galactose transpor 98.1 0.00011 2.3E-09 62.1 13.0 191 61-258 106-335 (367)
60 TIGR00803 nst UDP-galactose tr 98.0 1.7E-05 3.8E-10 66.6 7.6 63 190-252 159-221 (222)
61 COG2076 EmrE Membrane transpor 98.0 0.00021 4.6E-09 52.1 10.9 67 190-256 37-104 (106)
62 KOG2922 Uncharacterized conser 97.9 0.00011 2.4E-09 63.5 10.6 187 64-258 66-309 (335)
63 TIGR00688 rarD rarD protein. T 97.9 3.6E-05 7.8E-10 66.1 7.5 62 193-254 80-141 (256)
64 PF10639 UPF0546: Uncharacteri 97.9 6.8E-05 1.5E-09 55.5 7.5 111 1-138 1-112 (113)
65 PRK11431 multidrug efflux syst 97.9 0.0004 8.8E-09 51.0 11.0 66 190-255 36-102 (105)
66 PRK13499 rhamnose-proton sympo 97.8 0.0052 1.1E-07 54.8 19.6 248 2-256 13-342 (345)
67 PRK10650 multidrug efflux syst 97.8 0.00058 1.3E-08 50.5 11.3 65 190-254 42-107 (109)
68 PF06027 DUF914: Eukaryotic pr 97.8 0.00034 7.4E-09 62.1 11.7 129 2-140 174-305 (334)
69 KOG4510 Permease of the drug/m 97.7 5.9E-05 1.3E-09 63.5 4.5 68 190-257 104-171 (346)
70 KOG1442 GDP-fucose transporter 97.7 4.4E-05 9.6E-10 64.4 3.8 233 24-264 60-336 (347)
71 PF00893 Multi_Drug_Res: Small 97.6 0.00052 1.1E-08 49.4 8.7 57 190-246 36-93 (93)
72 COG4975 GlcU Putative glucose 97.6 4.5E-06 9.9E-11 69.2 -2.5 242 2-255 8-285 (288)
73 COG5070 VRG4 Nucleotide-sugar 97.6 0.00013 2.8E-09 59.9 5.5 178 73-258 79-299 (309)
74 PRK10452 multidrug efflux syst 97.5 0.00061 1.3E-08 51.3 7.3 68 66-139 34-102 (120)
75 PRK09541 emrE multidrug efflux 97.5 0.00082 1.8E-08 49.8 7.8 67 67-139 35-102 (110)
76 PF05653 Mg_trans_NIPA: Magnes 97.4 0.00049 1.1E-08 60.5 7.7 68 190-257 57-124 (300)
77 PRK10650 multidrug efflux syst 97.4 0.0043 9.4E-08 45.8 11.1 64 69-138 42-106 (109)
78 COG2076 EmrE Membrane transpor 97.4 0.0011 2.4E-08 48.3 7.3 67 66-138 34-101 (106)
79 COG2962 RarD Predicted permeas 97.4 0.011 2.3E-07 50.9 14.3 125 3-139 155-282 (293)
80 PF03151 TPT: Triose-phosphate 97.3 0.0013 2.9E-08 51.5 7.9 63 193-255 91-153 (153)
81 PF08449 UAA: UAA transporter 97.3 0.0062 1.3E-07 53.7 12.5 130 2-139 160-296 (303)
82 PF04142 Nuc_sug_transp: Nucle 97.2 0.0017 3.7E-08 55.4 7.9 67 193-259 27-93 (244)
83 PRK11431 multidrug efflux syst 97.2 0.0028 6.1E-08 46.5 7.9 64 69-138 36-100 (105)
84 PF04657 DUF606: Protein of un 97.1 0.014 3E-07 45.2 11.8 121 6-137 11-138 (138)
85 PF00893 Multi_Drug_Res: Small 96.9 0.0049 1.1E-07 44.3 6.6 57 68-130 35-92 (93)
86 PF06800 Sugar_transport: Suga 96.8 0.011 2.3E-07 50.9 9.3 122 2-135 144-266 (269)
87 PF10639 UPF0546: Uncharacteri 96.0 0.021 4.5E-07 42.4 5.7 64 189-252 47-111 (113)
88 KOG2765 Predicted membrane pro 95.1 0.15 3.2E-06 45.5 8.6 133 2-140 253-390 (416)
89 KOG1441 Glucose-6-phosphate/ph 94.6 0.074 1.6E-06 46.9 5.7 126 4-139 171-306 (316)
90 KOG4314 Predicted carbohydrate 94.5 0.034 7.3E-07 45.1 2.9 64 195-258 65-128 (290)
91 KOG2234 Predicted UDP-galactos 94.5 0.15 3.3E-06 45.1 7.1 63 198-260 107-169 (345)
92 PRK13499 rhamnose-proton sympo 94.1 1.7 3.7E-05 39.0 13.2 74 65-140 264-341 (345)
93 TIGR00803 nst UDP-galactose tr 94.1 0.3 6.5E-06 40.8 8.2 59 73-137 163-221 (222)
94 COG3238 Uncharacterized protei 93.8 1.7 3.8E-05 33.9 11.1 109 24-138 33-144 (150)
95 KOG2922 Uncharacterized conser 93.2 0.026 5.7E-07 49.1 0.1 74 187-260 68-141 (335)
96 KOG1580 UDP-galactose transpor 92.8 0.2 4.4E-06 41.9 4.7 108 24-139 201-312 (337)
97 KOG1581 UDP-galactose transpor 92.0 0.78 1.7E-05 39.9 7.5 109 22-139 199-312 (327)
98 PF05977 MFS_3: Transmembrane 91.7 13 0.00027 35.6 18.3 43 211-253 348-390 (524)
99 PRK02237 hypothetical protein; 91.7 1.6 3.5E-05 31.9 7.7 68 190-257 36-107 (109)
100 COG4975 GlcU Putative glucose 90.3 0.23 4.9E-06 41.9 2.6 77 59-138 207-283 (288)
101 COG5070 VRG4 Nucleotide-sugar 89.6 6.7 0.00014 32.8 10.4 110 22-140 182-296 (309)
102 PF02694 UPF0060: Uncharacteri 89.0 2.8 6.1E-05 30.6 7.0 68 190-257 35-105 (107)
103 KOG4831 Unnamed protein [Funct 88.7 2.7 5.9E-05 30.6 6.7 113 1-138 8-123 (125)
104 KOG1444 Nucleotide-sugar trans 86.3 4.5 9.8E-05 35.5 8.0 124 7-139 168-299 (314)
105 KOG3912 Predicted integral mem 84.8 2.9 6.3E-05 36.2 6.0 67 190-256 93-159 (372)
106 PF04342 DUF486: Protein of un 82.8 1.6 3.6E-05 31.7 3.2 30 224-253 77-106 (108)
107 PF04657 DUF606: Protein of un 81.9 6.4 0.00014 30.3 6.5 66 187-252 68-138 (138)
108 PRK13108 prolipoprotein diacyl 81.6 47 0.001 31.2 14.7 22 235-256 254-275 (460)
109 COG3169 Uncharacterized protei 80.8 4.9 0.00011 28.8 4.9 33 223-255 83-115 (116)
110 COG1742 Uncharacterized conser 79.6 21 0.00046 25.9 8.0 68 190-257 35-106 (109)
111 KOG1443 Predicted integral mem 76.3 55 0.0012 28.9 10.9 127 3-138 171-313 (349)
112 COG3086 RseC Positive regulato 72.3 6 0.00013 30.6 3.7 25 206-230 71-95 (150)
113 KOG1582 UDP-galactose transpor 71.5 14 0.00031 31.9 6.2 114 22-142 217-334 (367)
114 KOG4831 Unnamed protein [Funct 70.1 8.6 0.00019 28.0 3.9 63 190-253 59-123 (125)
115 PRK15049 L-asparagine permease 68.7 1.1E+02 0.0023 29.0 12.9 8 60-67 252-259 (499)
116 PF07857 DUF1632: CEO family ( 67.4 14 0.0003 31.7 5.4 24 237-260 116-139 (254)
117 PF08507 COPI_assoc: COPI asso 64.8 19 0.0004 27.6 5.3 14 240-253 90-103 (136)
118 PF02487 CLN3: CLN3 protein; 64.0 1.2E+02 0.0026 28.0 14.5 41 94-140 66-108 (402)
119 PF04342 DUF486: Protein of un 61.8 60 0.0013 23.7 8.3 52 81-138 54-106 (108)
120 TIGR00892 2A0113 monocarboxyla 60.1 1.4E+02 0.003 27.7 11.2 12 87-98 274-285 (455)
121 KOG1442 GDP-fucose transporter 59.5 2.9 6.3E-05 36.0 -0.1 60 197-256 116-175 (347)
122 PRK02237 hypothetical protein; 58.7 16 0.00035 26.7 3.6 41 94-140 65-105 (109)
123 PRK11469 hypothetical protein; 57.2 13 0.00029 30.2 3.4 46 209-254 40-86 (188)
124 TIGR02840 spore_YtaF putative 56.1 25 0.00054 29.1 4.9 48 207-254 31-80 (206)
125 PF01102 Glycophorin_A: Glycop 55.8 9.4 0.0002 28.8 2.1 13 240-252 74-86 (122)
126 PF06379 RhaT: L-rhamnose-prot 54.4 1.6E+02 0.0036 26.4 20.5 130 4-139 15-152 (344)
127 PF02694 UPF0060: Uncharacteri 52.8 17 0.00038 26.5 3.0 42 93-140 62-103 (107)
128 COG3104 PTR2 Dipeptide/tripept 51.3 2.2E+02 0.0049 27.0 16.0 50 90-139 325-377 (498)
129 COG3238 Uncharacterized protei 50.8 1.2E+02 0.0026 23.8 8.3 57 200-256 86-147 (150)
130 PF05297 Herpes_LMP1: Herpesvi 50.7 5.2 0.00011 34.6 0.0 24 194-217 119-142 (381)
131 KOG1583 UDP-N-acetylglucosamin 49.8 16 0.00035 31.7 2.7 63 198-260 79-142 (330)
132 KOG2766 Predicted membrane pro 44.2 98 0.0021 26.7 6.5 121 7-139 177-298 (336)
133 PF04246 RseC_MucC: Positive r 43.7 31 0.00067 26.3 3.4 22 209-230 67-88 (135)
134 PF07168 Ureide_permease: Urei 42.0 7.9 0.00017 33.9 -0.2 114 1-116 1-126 (336)
135 PF15102 TMEM154: TMEM154 prot 41.4 33 0.00072 26.6 3.1 21 240-260 66-86 (146)
136 PRK10489 enterobactin exporter 41.2 2.7E+02 0.0059 25.1 17.8 16 240-255 383-398 (417)
137 PF07444 Ycf66_N: Ycf66 protei 38.7 30 0.00064 24.2 2.3 27 233-259 3-29 (84)
138 PF08611 DUF1774: Fungal prote 37.9 46 0.00099 23.9 3.2 11 272-282 87-97 (97)
139 PF07857 DUF1632: CEO family ( 36.0 82 0.0018 27.1 5.0 131 2-145 6-139 (254)
140 TIGR01167 LPXTG_anchor LPXTG-m 34.8 73 0.0016 17.5 3.2 17 236-252 11-27 (34)
141 PRK10862 SoxR reducing system 34.2 42 0.00091 26.4 2.8 20 210-229 75-94 (154)
142 COG1742 Uncharacterized conser 33.1 50 0.0011 24.0 2.8 39 96-140 66-104 (109)
143 PF13038 DUF3899: Domain of un 30.7 37 0.00081 23.9 1.9 20 236-255 3-22 (92)
144 PF01306 LacY_symp: LacY proto 30.6 4.4E+02 0.0096 24.4 13.3 40 78-117 32-73 (412)
145 PRK10862 SoxR reducing system 30.1 1.1E+02 0.0023 24.1 4.5 26 84-109 70-95 (154)
146 COG3169 Uncharacterized protei 29.8 2.2E+02 0.0047 20.6 10.4 30 103-138 84-113 (116)
147 PF06570 DUF1129: Protein of u 26.5 3.6E+02 0.0078 22.1 10.1 31 60-91 145-175 (206)
148 PRK09528 lacY galactoside perm 26.4 4.8E+02 0.01 23.5 17.9 33 85-117 42-76 (420)
149 PF04246 RseC_MucC: Positive r 26.3 1.1E+02 0.0025 23.1 4.0 23 87-109 66-88 (135)
150 PRK06638 NADH:ubiquinone oxido 26.2 64 0.0014 26.5 2.7 34 225-258 134-169 (198)
151 PF12606 RELT: Tumour necrosis 26.1 1.1E+02 0.0023 19.1 3.0 11 247-257 15-25 (50)
152 COG3086 RseC Positive regulato 26.0 1.8E+02 0.0039 22.6 4.8 43 86-135 72-114 (150)
153 PF15471 TMEM171: Transmembran 25.4 99 0.0021 26.7 3.6 19 238-256 162-180 (319)
154 PF05961 Chordopox_A13L: Chord 24.6 1.1E+02 0.0024 20.4 3.0 18 239-256 6-23 (68)
155 PF11027 DUF2615: Protein of u 24.2 2.2E+02 0.0048 20.8 4.8 21 238-258 55-75 (103)
156 PF01914 MarC: MarC family int 23.2 1.8E+02 0.004 23.9 4.9 46 209-254 40-89 (203)
157 COG1971 Predicted membrane pro 23.0 89 0.0019 25.5 2.9 44 211-254 42-86 (190)
158 PF15345 TMEM51: Transmembrane 22.3 65 0.0014 27.1 2.0 22 241-262 67-88 (233)
159 MTH00057 ND6 NADH dehydrogenas 22.1 59 0.0013 26.4 1.7 33 225-257 133-167 (186)
160 PF15048 OSTbeta: Organic solu 22.0 1.4E+02 0.0031 22.5 3.5 27 228-254 25-55 (125)
161 KOG3817 Uncharacterized conser 21.8 6.2E+02 0.013 23.1 8.4 83 7-96 200-285 (452)
162 TIGR00891 2A0112 putative sial 21.6 5.5E+02 0.012 22.5 14.6 32 86-117 44-77 (405)
163 PRK15462 dipeptide/tripeptide 21.3 7.1E+02 0.015 23.6 10.4 48 91-138 310-360 (493)
164 PRK00052 prolipoprotein diacyl 21.2 84 0.0018 27.2 2.6 22 235-256 237-258 (269)
165 PHA02902 putative IMV membrane 21.2 1.5E+02 0.0032 19.5 3.1 23 240-262 8-31 (70)
166 PF08802 CytB6-F_Fe-S: Cytochr 21.0 1.8E+02 0.0039 17.1 3.1 31 54-84 4-34 (39)
167 PLN00028 nitrate transmembrane 20.9 6.8E+02 0.015 23.2 13.2 15 240-254 417-431 (476)
168 TIGR00544 lgt prolipoprotein d 20.9 5.6E+02 0.012 22.2 8.1 22 235-256 246-267 (278)
169 PF08693 SKG6: Transmembrane a 20.7 86 0.0019 18.6 1.8 16 242-257 22-37 (40)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=252.01 Aligned_cols=256 Identities=38% Similarity=0.616 Sum_probs=188.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-CCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-KGPVLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
|++..++.+...++.|.+++.+++|..+.++|+.++++++++ .+.+ +++ +.++.+++++.++.+.|+++ ..++.+
T Consensus 18 ~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~--~~~~~~~~~~~~~~~~l~l~g~~g-~~~~~~ 94 (358)
T PLN00411 18 MLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFT--NRSRSLPPLSVSILSKIGLLGFLG-SMYVIT 94 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHH--HHhcccCcchHHHHHHHHHHHHHH-HHHHHH
Confidence 567889999999999999998999999999999999999998 6554 332 23445577889999999998 788889
Q ss_pred HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC---------
Q 023321 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF--------- 149 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~--------- 149 (284)
++.|++++++++++++.+++|+++.+++++++.|+++.++|+++.+++|++++++|+.++...+++.....
T Consensus 95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~ 174 (358)
T PLN00411 95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFR 174 (358)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccc
Confidence 99999999999999999999999999999996444444455555599999999999998864444211000
Q ss_pred CC---CCCCC-----CCcc----------c-----------hhh---hhH--HHHHHHH-HHHHhhh-------------
Q 023321 150 SS---PSNSN-----IQLP----------V-----------SEY---SNW--ALGGLLL-TVTCFSS------------- 181 (284)
Q Consensus 150 ~~---~~~~~-----~~~~----------~-----------~~~---~~~--~~g~~~~-~~~~~~~------------- 181 (284)
.. ..... |+.. + +.. ..| ..+.... ..+....
T Consensus 175 ~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 254 (358)
T PLN00411 175 QLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDI 254 (358)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccch
Confidence 00 00000 1100 0 000 000 1111111 0011100
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 182 ATW-KIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 182 ~~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
..+ .++. ++.+.++|.+|++++++.||++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+++++|
T Consensus 255 ~~~~i~y~-~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~ 333 (358)
T PLN00411 255 TLITIVTM-AIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 001 1232 34567899999999999999999999999999999999999999999999999999999999998766544
No 2
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=5.8e-29 Score=218.01 Aligned_cols=241 Identities=14% Similarity=0.145 Sum_probs=183.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++..++||++++++|...+ ++||.+++++|+.++++++++ ...+ ++ + ..+++++.+....|.++...++.+++
T Consensus 14 ~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~---~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~ 87 (292)
T PRK11272 14 FALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR---GH-P-LPTLRQWLNAALIGLLLLAVGNGMVT 87 (292)
T ss_pred HHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh---CC-C-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999996 899999999999999999888 5433 22 2 22456788888999887778889999
Q ss_pred HHh-ccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC----
Q 023321 81 TGI-KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS---- 155 (284)
Q Consensus 81 ~al-~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~---- 155 (284)
.+. +++++++++++.+++|+++++++++ +|||++++ +++|+.++++|+.++. .+++... +..+..
T Consensus 88 ~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~-~~~~~~~--~~~G~l~~l~ 157 (292)
T PRK11272 88 VAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLN-SGGNLSG--NPWGAILILI 157 (292)
T ss_pred HHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHh-cCccccc--chHHHHHHHH
Confidence 999 9999999999999999999999986 69999999 9999999999998874 2222111 000100
Q ss_pred -------------CCCccc---hhhhhHHHHHHHHHHHHhh----------hhH--HHHHHHHHHHHHHHHHHHHHHhhc
Q 023321 156 -------------NIQLPV---SEYSNWALGGLLLTVTCFS----------SAT--WKIFQAIVGTVIRSSIIAWCLQKK 207 (284)
Q Consensus 156 -------------~~~~~~---~~~~~~~~g~~~~~~~~~~----------~~~--~~~~~~~~~~~l~~~~~~~~l~~~ 207 (284)
..+... ........+...+...... ... ...+.+++++.++|.+|++++|+.
T Consensus 158 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~ 237 (292)
T PRK11272 158 ASASWAFGSVWSSRLPLPVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNV 237 (292)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000000 0001112222222111110 011 234567888999999999999999
Q ss_pred CccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 208 GPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 208 ~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
++++++.+.+++|+++++++++++||+++..+++|+++++.|+++.+++++
T Consensus 238 ~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 238 RPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999876543
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=2.6e-28 Score=214.16 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=170.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (284)
+.+.++||++++..|...+ ++||..+.++|+.++.+++.+. .+ . + +.++ +.++..+.+.++.+.++.+++.
T Consensus 10 l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~-~~--~-~---~~~~-~~~~~~~~~~l~~~~~~~~~~~ 80 (295)
T PRK11689 10 LIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLT-VG--F-P---RLRQ-FPKRYLLAGGLLFVSYEICLAL 80 (295)
T ss_pred HHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHH-cc--c-c---cccc-ccHHHHHHHhHHHHHHHHHHHH
Confidence 5678999999999999996 8999999999999999888762 11 1 1 1111 1223345556666788888888
Q ss_pred Hhcc----ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC---CC-CC
Q 023321 82 GIKY----SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF---SS-PS 153 (284)
Q Consensus 82 al~~----~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~---~~-~~ 153 (284)
++++ .++++++++.+++|+++.+++++++|||++++ +++|+.++++|+.++.. +++..+.. .. ..
T Consensus 81 a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~-~~~~~~~~~~~~~~~~ 153 (295)
T PRK11689 81 SLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLG-GDNGLSLAELINNIAS 153 (295)
T ss_pred HHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheec-CCccchhhhhhhcccc
Confidence 7764 57788999999999999999999999999999 99999999999988852 22111000 00 00
Q ss_pred CCCCCcc--------------------chhhhh--HHHHHHHHHH-HHh--------hhhHH-HHHHHHHHHHHHHHHHH
Q 023321 154 NSNIQLP--------------------VSEYSN--WALGGLLLTV-TCF--------SSATW-KIFQAIVGTVIRSSIIA 201 (284)
Q Consensus 154 ~~~~~~~--------------------~~~~~~--~~~g~~~~~~-~~~--------~~~~~-~~~~~~~~~~l~~~~~~ 201 (284)
...|+.. ...... ...+...+.. ... ....+ .+...++.+.++|.+|+
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~ 233 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFFILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWN 233 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001100 000000 1111111111 110 00011 12223467899999999
Q ss_pred HHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 202 WCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 202 ~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
+++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++...++
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999998886544
No 4
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=210.45 Aligned_cols=235 Identities=16% Similarity=0.124 Sum_probs=172.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (284)
++++++||++++++|...+ ++||..+.++|++++++.+++.. + +++ .++ ......|+.....++.+++.
T Consensus 10 l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~-~--~~~----~~~---~~~~~~g~~~~~~~~~~~~~ 78 (299)
T PRK11453 10 LLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV-A--RPK----VPL---NLLLGYGLTISFGQFAFLFC 78 (299)
T ss_pred HHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh-c--CCC----Cch---HHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999996 79999999999999887666522 2 111 112 23445566555566778889
Q ss_pred Hhcc-ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCcc
Q 023321 82 GIKY-SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLP 160 (284)
Q Consensus 82 al~~-~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
++++ .++++++++.+++|+++.+++++++|||++++ +++|+.++++|+.++. .++......+. .|+..
T Consensus 79 ~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~-~~~~~~~~~~~----~G~~l 147 (299)
T PRK11453 79 AINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI-EDSLNGQHVAM----LGFML 147 (299)
T ss_pred HHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc-cccCCCcchhH----HHHHH
Confidence 9998 58899999999999999999999999999999 9999999999998885 22111110000 01100
Q ss_pred ---------------------chh--hhh---H--HHHHHHHHHHH-hh------------h----hHHHHHHHHHHHHH
Q 023321 161 ---------------------VSE--YSN---W--ALGGLLLTVTC-FS------------S----ATWKIFQAIVGTVI 195 (284)
Q Consensus 161 ---------------------~~~--~~~---~--~~g~~~~~~~~-~~------------~----~~~~~~~~~~~~~l 195 (284)
... ... + ..+........ .. + ....++.+++++.+
T Consensus 148 ~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 148 TLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHH
Confidence 000 000 0 11111111000 00 0 01235667999999
Q ss_pred HHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 196 RSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
+|.+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+++..+.++
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999999877654
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.96 E-value=9.8e-28 Score=210.60 Aligned_cols=243 Identities=12% Similarity=0.044 Sum_probs=173.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC--CCc-CHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG--PVL-TFSLLCKFFMLGVLGICLVQI 77 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~g~~~~~~~~~ 77 (284)
++++++||.++++.|.. + ++||.++.++|++++.+++++ ...+ ++.+. .+. +++++ .....+.++.+.++.
T Consensus 14 l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 88 (296)
T PRK15430 14 LAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSIC--RQWSYLKTLIQTPQKI-FMLAVSAVLIGGNWL 88 (296)
T ss_pred HHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHH--ccHHHHHHHHcCHHHH-HHHHHHHHHHHHHHH
Confidence 56789999999999985 3 699999999999999988877 5443 11100 011 23333 334467777789999
Q ss_pred HHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCC------
Q 023321 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS------ 151 (284)
Q Consensus 78 ~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~------ 151 (284)
++++|++++++++++++.++.|+++++++++++|||++++ +|.|++++++|+.++....++.. ....
T Consensus 89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~~~~~-~~~l~aa~~~ 161 (296)
T PRK15430 89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTFGSLP-IIALGLAFSF 161 (296)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHcCCcc-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999 99999999999998852222110 0000
Q ss_pred --CCC---CCC-Cccch--hhhhH--HHHHHHHHHHHh------h---hhH-HHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321 152 --PSN---SNI-QLPVS--EYSNW--ALGGLLLTVTCF------S---SAT-WKIFQAIVGTVIRSSIIAWCLQKKGPVF 211 (284)
Q Consensus 152 --~~~---~~~-~~~~~--~~~~~--~~g~~~~~~~~~------~---~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 211 (284)
... ... +.... ....+ ..+......... . +.. ...+..++.+.++|.+|++++|+.++++
T Consensus 162 a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~ 241 (296)
T PRK15430 162 AFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLST 241 (296)
T ss_pred HHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 000 000 00000 00001 111111100000 0 001 1233345578899999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 242 ~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 242 LGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888777543
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=1e-26 Score=203.78 Aligned_cols=243 Identities=15% Similarity=0.088 Sum_probs=174.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
|++++++|+.+++++|.+.+ ++||.++.++|++++.+++++...+ ++ .+.++|++...+..|+.. +..+.+++
T Consensus 17 ~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~---~~--~~~~~~~~~~~~~~g~~~-~~~~~~~~ 89 (293)
T PRK10532 17 LLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP---WR--LRFAKEQRLPLLFYGVSL-GGMNYLFY 89 (293)
T ss_pred HHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH---Hh--ccCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence 46789999999999999996 7999999999999999888872211 11 134566777888888874 78888999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC--CCC
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--NIQ 158 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--~~~ 158 (284)
++++++|++.++++.++.|+++.+++ +||++ +..++.++++|+.++. ..+......+..+.. ...
T Consensus 90 ~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~~~~~~~~G~ll~l~a 156 (293)
T PRK10532 90 LSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQDVSHVDLTGAALALGA 156 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCCcccCChHHHHHHHHH
Confidence 99999999999999999999998876 24432 3456778899998874 222111111100100 000
Q ss_pred ------------------ccchhhhhHHHHHHHHHHHHhh--------hhH--HHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 023321 159 ------------------LPVSEYSNWALGGLLLTVTCFS--------SAT--WKIFQAIVGTVIRSSIIAWCLQKKGPV 210 (284)
Q Consensus 159 ------------------~~~~~~~~~~~g~~~~~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~ 210 (284)
...........+...+...... ... +.++.+++++.++|.+|++++|+.+++
T Consensus 157 a~~~a~~~v~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~ 236 (293)
T PRK10532 157 GACWAIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTR 236 (293)
T ss_pred HHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 0000001111222211111110 011 135777999999999999999999999
Q ss_pred chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccccccc
Q 023321 211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNM 263 (284)
Q Consensus 211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 263 (284)
+++.+.++||+++++++++++||+++..+++|+++++.|++...+..++|.+.
T Consensus 237 ~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~ 289 (293)
T PRK10532 237 TFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKI 289 (293)
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999999999999999999999999999998766554433
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=1.3e-26 Score=199.73 Aligned_cols=226 Identities=19% Similarity=0.202 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023321 8 EVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS 87 (284)
Q Consensus 8 wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 87 (284)
||.+++..|..++++.||.+..+.|++.+.+++.+...+ + .+++++.+....|.++..+++.++++|+++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~---~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~ 72 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR---R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLP 72 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh---c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999998767999999999999998888773322 2 23456778889999988999999999999999
Q ss_pred HhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCC-----------
Q 023321 88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSN----------- 156 (284)
Q Consensus 88 ~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~----------- 156 (284)
+++++++.+++|+++++++++++|||++++ +++|++++++|+.++. .+++... ...+...
T Consensus 73 ~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~~~~~--~~~G~~~~l~a~~~~a~~ 143 (260)
T TIGR00950 73 VGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDGNLSI--NPAGLLLGLGSGISFALG 143 (260)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCCcccc--cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999998875 3321111 1001000
Q ss_pred ----CCccchhh--------hhHHHHHHHHHHHHhh--------hhH--HHHHHHHHHHHHHHHHHHHHHhhcCccchhh
Q 023321 157 ----IQLPVSEY--------SNWALGGLLLTVTCFS--------SAT--WKIFQAIVGTVIRSSIIAWCLQKKGPVFVAL 214 (284)
Q Consensus 157 ----~~~~~~~~--------~~~~~g~~~~~~~~~~--------~~~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 214 (284)
.......+ .....+.+++...... ... +..+.+++.+.++|.+|++++|+.++++++.
T Consensus 144 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~ 223 (260)
T TIGR00950 144 TVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASI 223 (260)
T ss_pred HHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 00000000 0112222222221111 011 2455678889999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q 023321 215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGF 250 (284)
Q Consensus 215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~ 250 (284)
+.+++|+++++++++++||+++..++.|..+++.|+
T Consensus 224 ~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 224 LALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999886
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.92 E-value=2.6e-23 Score=183.19 Aligned_cols=237 Identities=11% Similarity=0.140 Sum_probs=169.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321 11 MITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL 90 (284)
Q Consensus 11 ~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 90 (284)
..+..|.++++..+|...+++|+..+.+.+.+.+.. ..+++++.+++++.+....|+++ +.++.+.++|+++++++.
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~l~~~s~s~ 93 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSS--GLPKRLKISSALLKLLLPVAIVH-TIGHVTSNVSLSKVAVSF 93 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhccHHH
Confidence 345789999633779999999999998776653211 22334557788999999999996 899999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC---------------
Q 023321 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--------------- 155 (284)
Q Consensus 91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--------------- 155 (284)
++++.++.|+++++++++++|||++++ ++.|++++++|+.+.. .++.... ..|..
T Consensus 94 ~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~~~~~~~--~~G~~~~l~a~~~~a~~~v~ 163 (302)
T TIGR00817 94 THTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--DTELSFN--WAGFLSAMISNITFVSRNIF 163 (302)
T ss_pred HHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--CCccccc--HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999997653 1211110 00100
Q ss_pred -----C---CCccchhhhhHHHHHHHHHHHHhhhh-----H--H----------HHHH-HHHHHHHHHH----HHHHHHh
Q 023321 156 -----N---IQLPVSEYSNWALGGLLLTVTCFSSA-----T--W----------KIFQ-AIVGTVIRSS----IIAWCLQ 205 (284)
Q Consensus 156 -----~---~~~~~~~~~~~~~g~~~~~~~~~~~~-----~--~----------~~~~-~~~~~~l~~~----~~~~~l~ 205 (284)
. .+...........+.+++........ . + ..+. .++.+..++. +++++++
T Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (302)
T TIGR00817 164 SKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLG 243 (302)
T ss_pred HHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 00000111122233333322221100 0 0 0111 1222332343 4557999
Q ss_pred hcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 206 KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 206 ~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
+.+++++++..+++|++++++|++++||+++..+++|.++++.|++++++.|.++
T Consensus 244 ~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 244 RVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred cCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999998765433
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.92 E-value=2.4e-23 Score=181.48 Aligned_cols=237 Identities=12% Similarity=0.112 Sum_probs=168.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
+.++++|+...+.+|...+ .-++ +.++++..+.+++.| ...+. .+++++..++ +++.....+..+...++.+++
T Consensus 7 ~~aa~~~a~~~~~~k~~~~-~~~~--~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (281)
T TIGR03340 7 VFSALMHAGWNLMAKSHAD-KEPD--FLWWALLAHSVLLTPYGLWYL-AQVGWSRLPA-TFWLLLAISAVANMVYFLGLA 81 (281)
T ss_pred HHHHHHHHHHHHHHhhcCC-chhH--HHHHHHHHHHHHHHHHHHHhc-ccCCCCCcch-hhHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999997764 3444 347777777777777 44320 1222233333 445555556666789999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCC--C---
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--S--- 155 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~--~--- 155 (284)
+|+++.++++++++.++.|+++.+++++++|||++++ +|+|+.+++.|+.++.. ++... .+..+. .
T Consensus 82 ~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~~~--~~~~g~~~~l~a 152 (281)
T TIGR03340 82 QAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRFAQ--HRRKAYAWALAA 152 (281)
T ss_pred HHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccccc--cchhHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999988752 22111 110010 0
Q ss_pred ---------CCC-c---c---chhhhhHHHHHHHH----HHHHh----------hhh-HHHHHHHHHHHHHHHHHHHHHH
Q 023321 156 ---------NIQ-L---P---VSEYSNWALGGLLL----TVTCF----------SSA-TWKIFQAIVGTVIRSSIIAWCL 204 (284)
Q Consensus 156 ---------~~~-~---~---~~~~~~~~~g~~~~----~~~~~----------~~~-~~~~~~~~~~~~l~~~~~~~~l 204 (284)
... . . .........+.... ..... ... ....+..++.+.++|.+|++++
T Consensus 153 al~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~al 232 (281)
T TIGR03340 153 ALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWAM 232 (281)
T ss_pred HHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0 00000001111110 00000 000 1224566888999999999999
Q ss_pred hhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321 205 QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 252 (284)
Q Consensus 205 ~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l 252 (284)
++.++++++.+.+++|+++.+++++++||+++..+++|+++++.|+++
T Consensus 233 ~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 233 TRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999876
No 10
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=8.2e-23 Score=175.85 Aligned_cols=214 Identities=12% Similarity=0.076 Sum_probs=149.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCcCHH-HHHHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFS-LLCKFFMLGVLGIC 73 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-----~~~~~~~-~~~~~~~~g~~~~~ 73 (284)
+++++++||.++++.|. .+ ++||.++.++|++++.+++.+ ...+ ++++ .++.+++ ++......|++ .+
T Consensus 7 ~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~ 81 (256)
T TIGR00688 7 SLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLF--RQWAALIERLKRIQKRPLILSLLLCGLL-IG 81 (256)
T ss_pred HHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHhCcccchHHHHHHHHHHH-HH
Confidence 35788999999999998 43 699999999999999988777 4333 2111 1111222 24446667776 58
Q ss_pred HHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCC
Q 023321 74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS 153 (284)
Q Consensus 74 ~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 153 (284)
.++.++++|++++++++++++.+++|+++++++++++|||++++ +++++.++++|+.++...+++.. . ..
T Consensus 82 ~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~~~~--~--~~ 151 (256)
T TIGR00688 82 FNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKGSLP--W--EA 151 (256)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcCCch--H--HH
Confidence 99999999999999999999999999999999999999999999 99999999999988753222110 0 00
Q ss_pred CCC-----------CCccchhhhhHHHHHHHHHHHHh------hh---------hH--HHHHHHHHHHHHHHHHHHHHHh
Q 023321 154 NSN-----------IQLPVSEYSNWALGGLLLTVTCF------SS---------AT--WKIFQAIVGTVIRSSIIAWCLQ 205 (284)
Q Consensus 154 ~~~-----------~~~~~~~~~~~~~g~~~~~~~~~------~~---------~~--~~~~~~~~~~~l~~~~~~~~l~ 205 (284)
+.. .............+......... .+ .. +..+.+ +.+.++|.+|++++|
T Consensus 152 l~aa~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~t~i~~~l~~~a~~ 230 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNTDLAGFCLETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAG-LITGTPLLAFVIAAN 230 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 000 00000000111111111111000 00 01 223334 458899999999999
Q ss_pred hcCccchhhhhchHHHHHHHHHHHH
Q 023321 206 KKGPVFVALFKPLGTAIAVFMAVMF 230 (284)
Q Consensus 206 ~~~~~~~~~~~~l~pv~a~i~~~~~ 230 (284)
+.++++++.+.|++|+++++++.+.
T Consensus 231 ~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 231 RLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999764
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.89 E-value=5.6e-21 Score=167.82 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 4 VEIGEVGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (284)
Q Consensus 4 ~~~~wg~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (284)
.+++-..+...+....+++.+ |..-.+.-++.-.++..+ ...|+ .+++..+..+++|+++++++++. ...+.+...
T Consensus 21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~~~~~~~~~~~w~y~lla~~D-v~aN~~~v~ 98 (334)
T PF06027_consen 21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRR-GFKKWLKVLKRPWWKYFLLALLD-VEANYLVVL 98 (334)
T ss_pred HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcc-ccccchhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 356677788888887765554 555556656555555555 44431 11122223346788899999998 788999999
Q ss_pred HhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC-CCCCCCCCCcc
Q 023321 82 GIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-SSPSNSNIQLP 160 (284)
Q Consensus 82 al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~-~~~~~~~~~~~ 160 (284)
|++|++.+.+.++..+.-+++++++++++|||.++. |++|++++++|+.++...+....+.. +..+-
T Consensus 99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~------ 166 (334)
T PF06027_consen 99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSGSDSSSGSNP------ 166 (334)
T ss_pred HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccccccCCCCCcc------
Confidence 999999999999999999999999999999999999 99999999999998865543322211 11111
Q ss_pred chhhhhHHHHHHHHHHHHhhhhHHHHH---------------------------------------------------HH
Q 023321 161 VSEYSNWALGGLLLTVTCFSSATWKIF---------------------------------------------------QA 189 (284)
Q Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------------------------------------------~~ 189 (284)
..|.++.+.++..++..++. ..
T Consensus 167 -------i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~ 239 (334)
T PF06027_consen 167 -------ILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGY 239 (334)
T ss_pred -------chhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHH
Confidence 22333333333222222211 11
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN 262 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 262 (284)
.++..+-|.+....++..+|+..++-.....+++++++++++|+++++..++|.++|+.|+++++..++++.+
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~ 312 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE 312 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence 4455556667778899999999999999999999999999999999999999999999999999876654433
No 12
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.89 E-value=9.3e-21 Score=169.81 Aligned_cols=234 Identities=14% Similarity=0.113 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc--CHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023321 9 VGMITLGKAAMSSGMS-NFVYVVYYNALGTFILLHYFIYNTYRSKGPVL--TFSLLCKFFMLGVLGICLVQIFAITGIKY 85 (284)
Q Consensus 9 g~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 85 (284)
.......|.+++ .+| |..++++|++++.++....+.. ..+++++. .++++..++..|+++... +...+.|+++
T Consensus 62 ~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl~~ 137 (350)
T PTZ00343 62 VLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWAT--GFRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISMGL 137 (350)
T ss_pred HHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 344667899986 699 9999999999998876553322 12222333 245778899999998554 5557799999
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC----------
Q 023321 86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS---------- 155 (284)
Q Consensus 86 ~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~---------- 155 (284)
++++.++++.++.|+++++++++++|||++++ ++.+++++++|+.+... ++.... ..|+.
T Consensus 138 ~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~~~~~--~~G~~~~l~s~~~~a 207 (350)
T PTZ00343 138 GAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KELHFT--WLAFWCAMLSNLGSS 207 (350)
T ss_pred ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--ccchhH--HHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999998852 221111 00110
Q ss_pred ----------CCCc----cchhhhh----HHHHHHHHHHHHhhh------hH-------------HHHHHHHHHHHHHHH
Q 023321 156 ----------NIQL----PVSEYSN----WALGGLLLTVTCFSS------AT-------------WKIFQAIVGTVIRSS 198 (284)
Q Consensus 156 ----------~~~~----~~~~~~~----~~~g~~~~~~~~~~~------~~-------------~~~~~~~~~~~l~~~ 198 (284)
.+.. ....... ...|.++.+...... .. ..+...++.+++.|.
T Consensus 208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~ 287 (350)
T PTZ00343 208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYY 287 (350)
T ss_pred HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHH
Confidence 0000 0000111 123333332221111 00 012224677899999
Q ss_pred HHHH----HHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 199 IIAW----CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 199 ~~~~----~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
+|+. +++++++...++..+++|+++++.+++++||+++..+++|.++++.|++++++-
T Consensus 288 l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 288 LYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 9995 999999999999999999999999999999999999999999999999998754
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=1.2e-19 Score=158.04 Aligned_cols=245 Identities=21% Similarity=0.210 Sum_probs=173.9
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (284)
++.++.|+.+....|...+...++....+.|++.+.+...+...+ ++....+..+ ++.+..+.+.++...++.+++.
T Consensus 13 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (292)
T COG0697 13 LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL--EPRGLRPALR-PWLLLLLLALLGLALPFLLLFL 89 (292)
T ss_pred HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh--hccccccccc-chHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999998633778888888999999885542222 1111112221 2456677777778999999999
Q ss_pred HhccccHhHHHHHhhhhHHHHHHHHH-HHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC--CCC
Q 023321 82 GIKYSSPTLASAMGNLIPGITFLLAV-FFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--NIQ 158 (284)
Q Consensus 82 al~~~~~~~a~il~~~~Pi~~~lla~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--~~~ 158 (284)
++++++++.++++.+++|+++.++++ +++|||++++ ++.++.+++.|+.++...+...... ...+.. ...
T Consensus 90 ~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~~~~~-~~~g~~~~l~a 162 (292)
T COG0697 90 ALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGGGGIL-SLLGLLLALAA 162 (292)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCcchhH-HHHHHHHHHHH
Confidence 99999999999999999999999997 6679999999 9999999999999885322221110 000000 000
Q ss_pred -c---c--------chhhhhHHHH------HHHHHHHHhh--------h--hHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 023321 159 -L---P--------VSEYSNWALG------GLLLTVTCFS--------S--ATWKIFQAIVGTVIRSSIIAWCLQKKGPV 210 (284)
Q Consensus 159 -~---~--------~~~~~~~~~g------~~~~~~~~~~--------~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~ 210 (284)
. . .........+ .......... . .....+.+++.+++++.+|++++++.++.
T Consensus 163 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~ 242 (292)
T COG0697 163 ALLWALYTALVKRLSRLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGAS 242 (292)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 0 0 0000000111 0111101000 0 01223455777779999999999999999
Q ss_pred chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
.++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 243 ~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 243 LVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998865
No 14
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.86 E-value=9.9e-20 Score=153.07 Aligned_cols=247 Identities=14% Similarity=0.041 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-C-CCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-G-PVLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
+.+.++||..+.+.|... +.|+.++...|...+..+++. ....+ +.++ + ...++|.+..+.+.+.+ ++.+...
T Consensus 13 l~Ay~lwG~lp~y~kll~--~~~~~eIlahRviwS~~~~l~ll~~~r-~~~~~~~~~~~p~~~~~~~l~a~l-i~~nW~l 88 (293)
T COG2962 13 LLAYLLWGLLPLYFKLLE--PLPATEILAHRVIWSFPFMLALLFLLR-QWRELKQLLKQPKTLLMLALTALL-IGLNWWL 88 (293)
T ss_pred HHHHHHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHhCcHHHHHHHHHHHH-HHHHHHH
Confidence 467899999999999875 699999999999999998887 43320 1111 1 12345566777777777 6999999
Q ss_pred HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC-------CC
Q 023321 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF-------SS 151 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~-------~~ 151 (284)
|.+|.++..+-++++=.+..|++.++++.+++|||+++. |++++.++.+||.......|+..-.. ..
T Consensus 89 fiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~ 162 (293)
T COG2962 89 FIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGL 162 (293)
T ss_pred hheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 99999999999988864444321100 00
Q ss_pred CCCCCCCccchhhhhHHHHHHHHHHHHhhh----------------h-HHHHHHHHHHHHHHHHHHHHHHhhcCccchhh
Q 023321 152 PSNSNIQLPVSEYSNWALGGLLLTVTCFSS----------------A-TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVAL 214 (284)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------~-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 214 (284)
++..+.....+......+-++.+...+..+ . ...+...+..|.++..+|..+-|+++-+..+.
T Consensus 163 Ygl~RK~~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~ 242 (293)
T COG2962 163 YGLLRKKLKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGF 242 (293)
T ss_pred HHHHHHhcCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 000000000011111111122222221111 1 12234558889999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
++|++|..-.+++++++||+++..++...++|..|+++...+..
T Consensus 243 lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l 286 (293)
T COG2962 243 LQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGL 286 (293)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876544
No 15
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.80 E-value=1.4e-17 Score=136.81 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=161.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321 11 MITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL 90 (284)
Q Consensus 11 ~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 90 (284)
...+.|.... ..+|...+.+|..++.+++++.+ |.++.+.+++++..++..|.. .+..|.+||.+++..|.+.
T Consensus 27 Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~-----RPwr~r~~~~~~~~~~~yGvs-Lg~MNl~FY~si~riPlGi 99 (292)
T COG5006 27 GASFAKSLFP-LVGAAGVTALRLAIAALILLALF-----RPWRRRLSKPQRLALLAYGVS-LGGMNLLFYLSIERIPLGI 99 (292)
T ss_pred hHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHh-----hHHHhccChhhhHHHHHHHHH-HHHHHHHHHHHHHhccchh
Confidence 3456777775 69999999999999999988632 233346777889999999998 4899999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchhhhhHHHH
Q 023321 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALG 170 (284)
Q Consensus 91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (284)
+.-+.++-|+...+++. +| .+ ..+.+.+++.|+.++. ..++.....+ ..|
T Consensus 100 AVAiEF~GPL~vA~~~s----Rr--~~------d~vwvaLAvlGi~lL~-p~~~~~~~lD-----------------p~G 149 (292)
T COG5006 100 AVAIEFTGPLAVALLSS----RR--LR------DFVWVALAVLGIWLLL-PLGQSVWSLD-----------------PVG 149 (292)
T ss_pred hhhhhhccHHHHHHHhc----cc--hh------hHHHHHHHHHHHHhhe-eccCCcCcCC-----------------HHH
Confidence 99999999999877643 22 23 6777888899998884 3333222111 122
Q ss_pred HHHHHHHHhhhhHHH------------------------------------------------HHHHHHHHHHHHHHHHH
Q 023321 171 GLLLTVTCFSSATWK------------------------------------------------IFQAIVGTVIRSSIIAW 202 (284)
Q Consensus 171 ~~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~ 202 (284)
..+.+.+..+|+.|. +-.+++++.+.|.+-..
T Consensus 150 v~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmi 229 (292)
T COG5006 150 VALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMI 229 (292)
T ss_pred HHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHH
Confidence 222222222222221 22348899999999999
Q ss_pred HHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321 203 CLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 259 (284)
Q Consensus 203 ~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~ 259 (284)
+++|.+....+.+..+||.++.+.|++++||+++..||.|.++++.+..-.....+|
T Consensus 230 AL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 230 ALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 999999999999999999999999999999999999999999999887766554433
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.79 E-value=7.9e-20 Score=150.92 Aligned_cols=241 Identities=15% Similarity=0.134 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023321 5 EIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI 83 (284)
Q Consensus 5 ~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 83 (284)
+.++....++.+..+ +.+|.+..-.|.+.-++...| ...+ +.. ....+....++++.|++| .....+.|+|+
T Consensus 46 s~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~---~~~-v~gp~g~R~~LiLRg~mG-~tgvmlmyya~ 118 (346)
T KOG4510|consen 46 SYFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYY---MQP-VIGPEGKRKWLILRGFMG-FTGVMLMYYAL 118 (346)
T ss_pred HHHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEE---eee-eecCCCcEEEEEeehhhh-hhHHHHHHHHH
Confidence 355555666666666 489999999998877777777 3332 111 111111224557788887 67788899999
Q ss_pred ccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchh
Q 023321 84 KYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSE 163 (284)
Q Consensus 84 ~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
+|++.++|+++.+++|.|+.+++|+++|||.++. +.++..+.+.||.+++- .+...+....+....+..+..
T Consensus 119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIvR--PpFlFG~~t~g~~~s~~~~~~ 190 (346)
T KOG4510|consen 119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIVR--PPFLFGDTTEGEDSSQVEYDI 190 (346)
T ss_pred hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEec--CCcccCCCccccccccccccC
Confidence 9999999999999999999999999999999999 99999999999999862 222111111111000000000
Q ss_pred -hh-----------------------------hH---HHHHHHHHHHHhhhhHH----------HHHHHHHHHHHHHHHH
Q 023321 164 -YS-----------------------------NW---ALGGLLLTVTCFSSATW----------KIFQAIVGTVIRSSII 200 (284)
Q Consensus 164 -~~-----------------------------~~---~~g~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~ 200 (284)
.. .+ .++.+...+.+...+.+ ....-++.+.+++++.
T Consensus 191 ~gt~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIll 270 (346)
T KOG4510|consen 191 PGTVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILL 270 (346)
T ss_pred CchHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHH
Confidence 00 00 00111111100000000 0011177789999999
Q ss_pred HHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 201 AWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 201 ~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
+.++|+-.+..+++..+...+++.++.++++||.|+++.|.|+++++.+.+....+|...
T Consensus 271 Tm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 271 TMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred HHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999887666544
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.78 E-value=5e-17 Score=142.13 Aligned_cols=237 Identities=16% Similarity=0.169 Sum_probs=164.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcC-HHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLT-FSLLCKFFMLGVLGICLVQIFA 79 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ 79 (284)
++++++||++++..|... +.++.++. |..++.+++.. .... + + ++.+ ++.+..-.+.|++ .+..+.++
T Consensus 7 lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~--~-~--~~~~~~~~~~~g~l~G~~-w~ig~~~~ 76 (290)
T TIGR00776 7 LIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIF--V-L--PEFWALSIFLVGLLSGAF-WALGQINQ 76 (290)
T ss_pred HHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHH--h-C--CcccccHHHHHHHHHHHH-HHhhhhhH
Confidence 467899999999999865 68888776 78888777765 3333 2 1 1122 2233333444444 68889999
Q ss_pred HHHhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchh----hHHHHHHhhhhhhhhcccCCCCCC---CC-
Q 023321 80 ITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAK----ILGTVVSIAGAFIVSLYKGPPLLG---FS- 150 (284)
Q Consensus 80 ~~al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~----~~g~~l~~~Gv~li~~~~~~~~~~---~~- 150 (284)
+.++++++.+.+..+.+ +.++++.+.+.+++|||.+++ + ++|+++.++|+.++...+++.... .+
T Consensus 77 ~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~ 150 (290)
T TIGR00776 77 FKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNF 150 (290)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccccccccch
Confidence 99999999999999888 999999999999999999998 8 999999999998875332221110 00
Q ss_pred CCCCCCC---Ccc------------chhh-hh--HHH----HHHHHHHHH---hhh---hHH-HHHHHHHHHHHHHHHHH
Q 023321 151 SPSNSNI---QLP------------VSEY-SN--WAL----GGLLLTVTC---FSS---ATW-KIFQAIVGTVIRSSIIA 201 (284)
Q Consensus 151 ~~~~~~~---~~~------------~~~~-~~--~~~----g~~~~~~~~---~~~---~~~-~~~~~~~~~~l~~~~~~ 201 (284)
..++..+ ... ++.. .. ... +........ -.+ ..+ .+..+++ ..+++.+|.
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~-~~ia~~~y~ 229 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAFGVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLM-WGIGNFFYL 229 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 0011000 000 0000 00 011 111111110 000 111 2233344 799999999
Q ss_pred HHHh-hcCccchhhhhchHHHHHHHHHHHHhCCCCchhhH----HHHHHHHHHHHHhhc
Q 023321 202 WCLQ-KKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSL----IGTVVIAFGFYAVIW 255 (284)
Q Consensus 202 ~~l~-~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~----~G~~li~~g~~l~~~ 255 (284)
.+.+ +.+++.++.+.+.+|+.+.+++++++||+.+..++ +|.++++.|+.+...
T Consensus 230 ~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 230 FSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9999 99999999999999999999999999999999999 999999999988754
No 18
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.64 E-value=1.5e-15 Score=115.78 Aligned_cols=124 Identities=22% Similarity=0.302 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023321 6 IGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIK 84 (284)
Q Consensus 6 ~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 84 (284)
++||...++.|...+ +.||....++|+..+.+ +++ .... ++++....+++++......|.++...++.+++++++
T Consensus 1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLIL--GRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhh--ccccccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 479999999999996 69999999999999997 555 4443 333235666778888899999977999999999999
Q ss_pred cccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 85 YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 85 ~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+.+++.++.+.+++|+++.+++++++|||++++ +++|+.+.+.|+.++.
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 9999999999998763
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.63 E-value=1.6e-15 Score=112.01 Aligned_cols=128 Identities=15% Similarity=0.167 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-CCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-PVLTFSLLCKFFMLGVLGICLVQIFA 79 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (284)
++++++||...++.|...+ ++||...++.|.....+++.. .... .+.+. -..++|.|..+.+-|+.+ ++...+|
T Consensus 9 LLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~--g~~~~~~~~~~k~~lflilSGla~-glswl~Y 84 (140)
T COG2510 9 LLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVT--GNWQAGGEIGPKSWLFLILSGLAG-GLSWLLY 84 (140)
T ss_pred HHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhc--CceecccccCcceehhhhHHHHHH-HHHHHHH
Confidence 4688999999999999995 899999999999999988887 5443 22221 124667788888888665 9999999
Q ss_pred HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
|.|++..+++....+..++|+++++++++++|||++.+ +|+|+.+..+|++++.
T Consensus 85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs 138 (140)
T COG2510 85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence 99999999999999999999999999999999999999 9999999999998764
No 20
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.61 E-value=2.5e-13 Score=119.69 Aligned_cols=224 Identities=15% Similarity=0.178 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHH
Q 023321 25 NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITF 103 (284)
Q Consensus 25 p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~ 103 (284)
|..+++..+....+.-.+ .... + .++.++..+.++...+++. .+...+.+.|++|.|.+.-.+.-++.|++++
T Consensus 32 ~~~lt~~q~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~al~~i~~p~~~~~ks~~~i~vm 105 (303)
T PF08449_consen 32 PLFLTFVQFAFNALFSFILLSLF---K--FPKSRKIPLKKYAILSFLF-FLASVLSNAALKYISYPTQIVFKSSKPIPVM 105 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc---c--ccCCCcChHHHHHHHHHHH-HHHHHHHHHHHHhCChHHHHHHhhhHHHHHH
Confidence 889999999998887766 3332 2 1222233456677888875 8889999999999999999999999999999
Q ss_pred HHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCC--CCCCc------------------c---
Q 023321 104 LLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSN--SNIQL------------------P--- 160 (284)
Q Consensus 104 lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~--~~~~~------------------~--- 160 (284)
+++.+++|+|.+++ ++.++++..+|+.+....+............ ..|.. .
T Consensus 106 i~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~ 179 (303)
T PF08449_consen 106 ILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKK 179 (303)
T ss_pred HHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999987554333222111100 00110 0
Q ss_pred chh------hhhHHHHHHHHHHHHhh--hh---------------HHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhc
Q 023321 161 VSE------YSNWALGGLLLTVTCFS--SA---------------TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKP 217 (284)
Q Consensus 161 ~~~------~~~~~~g~~~~~~~~~~--~~---------------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 217 (284)
+.. ......+..+....... .. ...+....+...++....++..++.++...+++..
T Consensus 180 ~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t 259 (303)
T PF08449_consen 180 YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTT 259 (303)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHH
Confidence 000 01112222222221111 00 01122225666777788888999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 218 LGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 218 l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
+.-+++++++++++|+++++.+|+|.+++..|..+....|+|+
T Consensus 260 ~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 260 LRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999998776554
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.57 E-value=1.2e-13 Score=119.79 Aligned_cols=187 Identities=22% Similarity=0.277 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCC
Q 023321 65 FMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGP 144 (284)
Q Consensus 65 ~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~ 144 (284)
+....+ ....+.++..|+.+++++..+++.+++.+|+..++.++..||+++. |.+++.+.+.|++++...+..
T Consensus 163 l~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 163 LFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc
Confidence 333444 5888999999999999999999999999999999999999999999 999999999999988654332
Q ss_pred CCCCCCCCCCCCCCc-------cc----------------hhhhhHHHHHHHHHHHHhhhhHHHH---------------
Q 023321 145 PLLGFSSPSNSNIQL-------PV----------------SEYSNWALGGLLLTVTCFSSATWKI--------------- 186 (284)
Q Consensus 145 ~~~~~~~~~~~~~~~-------~~----------------~~~~~~~~g~~~~~~~~~~~~~~~~--------------- 186 (284)
..+.........|+. .| ..+.+..+|.+-++--...|+...+
T Consensus 236 ~~~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~ 315 (416)
T KOG2765|consen 236 QNSDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST 315 (416)
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc
Confidence 211111000011110 00 0011223333333322233322221
Q ss_pred ------HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 187 ------FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 187 ------~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
+.+.+.+.++=++|.++.-..++..+++-+.++.+++++.+.++-|.++++.+++|.+.|.+|.+.++...+
T Consensus 316 q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 316 QFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 122889999999999999999999999999999999999999988999999999999999999999987654
No 22
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.38 E-value=1.8e-12 Score=97.36 Aligned_cols=102 Identities=21% Similarity=0.309 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHH-HHHHhhhcC--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHH
Q 023321 30 VYYNALGTFILLH-YFIYNTYRS--KGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLA 106 (284)
Q Consensus 30 ~~R~~~a~l~l~~-~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla 106 (284)
.+|+..+.+++.. ...+ ++. ..+..+++.+.+.+..|.++...++.++++|.++.+ +.++.+.+++|+++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~ 78 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIR--GRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLS 78 (113)
T ss_pred HHHHHHHHHHHHHHHHHH--ccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHH
Confidence 5799999998888 5554 221 112334455677777788886799999999999999 588899999999999999
Q ss_pred HHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 107 VFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 107 ~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
++++|||++++ ++.++.++++|+.++..
T Consensus 79 ~~~~~er~~~~------~~~a~~l~~~Gv~li~~ 106 (113)
T PF13536_consen 79 WLFFKERLSPR------RWLAILLILIGVILIAW 106 (113)
T ss_pred HHHhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999863
No 23
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.33 E-value=4e-11 Score=103.18 Aligned_cols=124 Identities=19% Similarity=0.241 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSN--FVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p--~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
++++++|+...+..|...+ +.+| .....+|+.++.+++.+ .+.. ++. +..+.+++......|.++....+.+
T Consensus 134 l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T TIGR00950 134 LGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFL--GPN--PQALSLQWGALLYLGLIGTALAYFL 208 (260)
T ss_pred HHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhc--CCC--CCcchHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999985 5664 45555789999999888 5543 222 2335667778888999888899999
Q ss_pred HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 136 (284)
+++++++.+++.++.+.+++|+++++++++++||+++.+ ++.|..+.+.|++
T Consensus 209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~~ 260 (260)
T TIGR00950 209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAVL 260 (260)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999 9999999999873
No 24
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.20 E-value=8.3e-10 Score=90.40 Aligned_cols=183 Identities=13% Similarity=0.161 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccC
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKG 143 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~ 143 (284)
+..+++- +-+..+..+.|+++.|=....+--++-|+=+++++.++.+++-+|+ +..+++..+.|++++. ++.
T Consensus 88 YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFm-YK~ 159 (337)
T KOG1580|consen 88 YAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFM-YKE 159 (337)
T ss_pred HHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhh-ccc
Confidence 3444444 5777888999999999888888899999999999999999999998 9999999999999985 554
Q ss_pred CCCCCCCCCCCCCCCc---------------------cch-hh-----hhHHHHHHHHHHHHh---------------hh
Q 023321 144 PPLLGFSSPSNSNIQL---------------------PVS-EY-----SNWALGGLLLTVTCF---------------SS 181 (284)
Q Consensus 144 ~~~~~~~~~~~~~~~~---------------------~~~-~~-----~~~~~g~~~~~~~~~---------------~~ 181 (284)
+...+........|.. .+. .. ....-..+++..+.+ .+
T Consensus 160 ~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~ 239 (337)
T KOG1580|consen 160 NKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPY 239 (337)
T ss_pred cccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccH
Confidence 3222111111111110 010 00 111111121111111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321 182 ATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 254 (284)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~ 254 (284)
..|.+..-.+++.+|+++....+...+|-.-+++....-.++++.++++++.++++.||+|..++..+...=.
T Consensus 240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 2344555589999999999999999999999999999999999999999999999999999999999887744
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.19 E-value=2.7e-08 Score=86.73 Aligned_cols=252 Identities=10% Similarity=0.092 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHHH-HHHHhhh--cCCCC------CcCHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSG---MSNFVYVVYYNALGTFILLH-YFIYNTY--RSKGP------VLTFSLLCKFFMLGV 69 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~---~~p~~~~~~R~~~a~l~l~~-~~~~~~~--~~~~~------~~~~~~~~~~~~~g~ 69 (284)
+...+.++......|..-..+ ..|....+.-=.+-.++... .+...++ ++... ...+++..++.+=++
T Consensus 21 ~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~ 100 (345)
T KOG2234|consen 21 IVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPAL 100 (345)
T ss_pred HHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHH
Confidence 445667888888888876545 56777777766666655555 4433101 11111 123456778788788
Q ss_pred HHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCC
Q 023321 70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGF 149 (284)
Q Consensus 70 ~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~ 149 (284)
+ +++.+-+.|.++.+.+++...+..++-.+-++++..+++++|.+++ ||.+..+.++|+.++-....+..+..
T Consensus 101 i-YalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~~a~ 173 (345)
T KOG2234|consen 101 I-YALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPTGAK 173 (345)
T ss_pred H-HHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 7 4888889999999999999999999999999999999999999999 99999999999988842222211111
Q ss_pred C---CCCCCCCCc-------------cc-------hhhhhH-------HHHHHHHHHHHhhh------------h-HHHH
Q 023321 150 S---SPSNSNIQL-------------PV-------SEYSNW-------ALGGLLLTVTCFSS------------A-TWKI 186 (284)
Q Consensus 150 ~---~~~~~~~~~-------------~~-------~~~~~~-------~~g~~~~~~~~~~~------------~-~~~~ 186 (284)
+ ......|-. .| +..+.| ..|.++.++..... + .+..
T Consensus 174 ~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~v 253 (345)
T KOG2234|consen 174 SESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIV 253 (345)
T ss_pred CCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHH
Confidence 0 000000000 00 011111 23333333322110 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
+.-++..+++=.+-..-+|+.|-..=+....+..+++.+.++.++|-+++....+|..+++.++.++...+.++
T Consensus 254 w~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 254 WLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 22245555555666677788887777777888899999999999999999999999999999999998554443
No 26
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.14 E-value=1.9e-10 Score=100.32 Aligned_cols=236 Identities=14% Similarity=0.189 Sum_probs=157.4
Q ss_pred HHHHHHh--cCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhH
Q 023321 14 LGKAAMS--SGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTL 90 (284)
Q Consensus 14 ~~k~~~~--~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~ 90 (284)
..|..++ ..--|..++..++..+.+.++. -..+ ..+..+..++..+..++.+|++. ++...+-+.|+++.+++.
T Consensus 35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~--~~~~~~~~~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~VsF 111 (316)
T KOG1441|consen 35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLK--LVPPSKISSKLPLRTLLPLGLVF-CISHVLGNVSLSYVPVSF 111 (316)
T ss_pred eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhc--CCCCCccccccchHHHHHHHHHH-HHHHHhcchhhhccchhH
Confidence 4577775 3344888888888888877766 3332 22222222445678889999995 999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC---------------
Q 023321 91 ASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS--------------- 155 (284)
Q Consensus 91 a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~--------------- 155 (284)
...+-.++|+++.++++++.+|+.+.+ .+..++....|+.+-... +..... .|+.
T Consensus 112 ~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--e~~fn~--~G~i~a~~s~~~~al~~I~ 181 (316)
T KOG1441|consen 112 YQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--ELSFNL--FGFISAMISNLAFALRNIL 181 (316)
T ss_pred HHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--cccccH--HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 888888888888776532 211111 0100
Q ss_pred -------CCCccchhhhhH---HHHHHHHHHHH--------h---hhhHH--HHHHHHHHHHHHH---HHHHHHHhhcCc
Q 023321 156 -------NIQLPVSEYSNW---ALGGLLLTVTC--------F---SSATW--KIFQAIVGTVIRS---SIIAWCLQKKGP 209 (284)
Q Consensus 156 -------~~~~~~~~~~~~---~~g~~~~~~~~--------~---~~~~~--~~~~~~~~~~l~~---~~~~~~l~~~~~ 209 (284)
.+....+....+ .....+++... . ....| .....++.+.+++ ..-+..+.+++|
T Consensus 182 ~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSa 261 (316)
T KOG1441|consen 182 SKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSA 261 (316)
T ss_pred HHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCc
Confidence 000000000000 00011111000 0 00000 0111122233333 444567899999
Q ss_pred cchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccc
Q 023321 210 VFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESN 262 (284)
Q Consensus 210 ~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 262 (284)
..-++.+...-.+.+..++++++|+.++.+..|.++.+.|++++++.|.++++
T Consensus 262 lT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 262 LTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred hhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999987665543
No 27
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.12 E-value=2.4e-09 Score=93.97 Aligned_cols=128 Identities=12% Similarity=0.070 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++++++|+...+..|...+ +.+|...... .+++.+++.+ .... .. ....+...+...+..|+++..+.+.+++
T Consensus 154 l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~--~~--~~~~~~~~~~~~l~lgv~~t~~~~~l~~ 227 (293)
T PRK10532 154 LGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQ--AG--EALWHWSILPLGLAVAILSTALPYSLEM 227 (293)
T ss_pred HHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHc--cC--cccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999874 6888777544 4566666666 4432 21 1223444455567889998899999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcc
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLY 141 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~ 141 (284)
+++++.+++.++++.+++|+++.++++++++|+++.. +++|..+.+.|++....+
T Consensus 228 ~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~ 282 (293)
T PRK10532 228 IALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT 282 (293)
T ss_pred HHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999 999999999999888543
No 28
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.12 E-value=1.9e-09 Score=94.63 Aligned_cols=128 Identities=13% Similarity=0.028 Sum_probs=106.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++++++|+...+..|.... -++.....+++..+.+.+.+ .... ........+.+.+..+...|+++..+.+.+++
T Consensus 156 l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~ 231 (292)
T PRK11272 156 LIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLS--GERLTALPTLSGFLALGYLAVFGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHc--CCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998652 34556778888888888877 5443 22111123456788888999998889999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+++++.++++++++.+++|+++++++++++||+++.. +++|..+.+.|+.+..
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~ 284 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVT 284 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999998874
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.06 E-value=1.8e-08 Score=85.82 Aligned_cols=179 Identities=18% Similarity=0.275 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321 57 TFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (284)
Q Consensus 57 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 136 (284)
++|+..++.+=+++ +...+.+.+.++++++++.-.++.++-.+++++++++++|+|++++ ||.++.+.++|+.
T Consensus 13 ~~~~~~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~ 85 (244)
T PF04142_consen 13 SPKDTLKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV 85 (244)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence 35677888888888 4999999999999999999999999999999999999999999999 9999999999998
Q ss_pred hhhcccCCCCCCCCCCCCCCCCccchhhhhHHHHHHHHHHHHhhhh----------------------------------
Q 023321 137 IVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSA---------------------------------- 182 (284)
Q Consensus 137 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------------------------- 182 (284)
++-..+.......+..... ++ ........|....+.+++.-+
T Consensus 86 lv~~~~~~~~~~~~~~~~~-~~---~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~ 161 (244)
T PF04142_consen 86 LVQLSSSQSSDNSSSSSVH-HD---ASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLL 161 (244)
T ss_pred eeecCCccccccccccccc-cc---cccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 8743222221111100000 00 001111222222221111100
Q ss_pred -----------------H--HHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHH
Q 023321 183 -----------------T--WKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT 243 (284)
Q Consensus 183 -----------------~--~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~ 243 (284)
. +..+.-++...++=.+....+|+.|...=+......-+++.+.+++++|.+++....+|.
T Consensus 162 ~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~ 241 (244)
T PF04142_consen 162 ALLLSDGSAISESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGA 241 (244)
T ss_pred HHhcccccccccCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhe
Confidence 0 011112555566667777889999999999999999999999999999999999999997
Q ss_pred HHH
Q 023321 244 VVI 246 (284)
Q Consensus 244 ~li 246 (284)
.++
T Consensus 242 ~~V 244 (244)
T PF04142_consen 242 ALV 244 (244)
T ss_pred ecC
Confidence 653
No 30
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.99 E-value=2.4e-09 Score=79.51 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321 186 IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~ 255 (284)
+...++.++++..+|++++|...++++.++.-+.|+++++++++++||+++..+++|+.+|..|++++.+
T Consensus 70 lilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 70 LILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 3445789999999999999999999999999999999999999999999999999999999999988764
No 31
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.96 E-value=1.4e-08 Score=89.24 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=97.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++++++|+...+..|...+ +.+|....+ ..+.+.+.+ .... . ......+.+.+..+...|+ ...+.+.+++
T Consensus 162 l~aa~~~A~~~v~~k~~~~-~~~~~~~~~---~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~~-~t~~~~~l~~ 233 (295)
T PRK11689 162 FIGAFIWAAYCNVTRKYAR-GKNGITLFF---ILTALALWIKYFLS--P-QPAMVFSLPAIIKLLLAAA-AMGFGYAAWN 233 (295)
T ss_pred HHHHHHHHHHHHHHhhccC-CCCchhHHH---HHHHHHHHHHHHHh--c-CccccCCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 5789999999999999874 678766532 333344443 3322 2 1112345556777776665 4588999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+++++.+++.++.+.++.|++++++++++++|+++.. +++|..+.+.|+.+..
T Consensus 234 ~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~ 286 (295)
T PRK11689 234 VGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCW 286 (295)
T ss_pred HHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHh
Confidence 9999999999999999999999999999999999999 9999999999997774
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.96 E-value=8.2e-09 Score=85.62 Aligned_cols=233 Identities=12% Similarity=0.092 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023321 10 GMITLGKAAMSSGMS-NFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSS 87 (284)
Q Consensus 10 ~~~~~~k~~~~~~~~-p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~ 87 (284)
..........+++++ |..-+|.-+..-+++-.| ..+| + +.+ +..|++++++++.. .=.+.+...|.||++
T Consensus 32 ~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR---~---~~~-~~~~~hYilla~~D-VEaNy~vV~AyQyTs 103 (336)
T KOG2766|consen 32 STAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFR---R---KYI-KAKWRHYILLAFVD-VEANYFVVKAYQYTS 103 (336)
T ss_pred cchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhh---h---HHH-HHHHHHhhheeEEe-ecccEEEeeehhhcc
Confidence 333444444434443 777788888888888888 6554 2 122 33577789999987 556677889999999
Q ss_pred HhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCc-------c
Q 023321 88 PTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL-------P 160 (284)
Q Consensus 88 ~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~-------~ 160 (284)
...+.++..-....+.+++|+++|-|-++. |+.|+.+|+.|+..+++.+-...+..+..+-..||. .
T Consensus 104 mtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATl 177 (336)
T KOG2766|consen 104 MTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATL 177 (336)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEeccee
Confidence 999999999999999999999999999999 999999999999988765433322111111112222 1
Q ss_pred c------------hhhhhHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321 161 V------------SEYSNWALGGLLLTVTCFSS-----------------ATWKIFQAIVGTVIRSSIIAWCLQKKGPVF 211 (284)
Q Consensus 161 ~------------~~~~~~~~g~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 211 (284)
| ..+..-..|.+-+..+..+. .....+...++.++-|.+.-..+|..+++.
T Consensus 178 YaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~~~aT~ 257 (336)
T KOG2766|consen 178 YAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKTNSATM 257 (336)
T ss_pred eeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheecCCceE
Confidence 1 11112233333333222211 111112224444444455556678889999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
.++-....-.++++. ..||-+.++...+..+.+..|.+++..+++
T Consensus 258 ~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 258 FNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred EEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 999888889999888 668989999999999999999999865443
No 33
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.93 E-value=2.7e-08 Score=89.41 Aligned_cols=127 Identities=11% Similarity=0.162 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHHH-HHHHhhhcCC-C---CCcCHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSN-FVYVVYYNALGTFILLH-YFIYNTYRSK-G---PVLTFSLLCKFFMLGVLGICLV 75 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p-~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~~~ 75 (284)
+.++++|+...+..|.... ..|| ...+++....+.+.+.+ .... ++.. . ...... ...++..|+. ..+.
T Consensus 195 l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la 269 (358)
T PLN00411 195 TIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVV--EKNNPSVWIIHFDIT-LITIVTMAII-TSVY 269 (358)
T ss_pred HHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHH--ccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence 4678999999999999875 4654 46677777776666655 3332 2211 1 112222 2234444554 4678
Q ss_pred HHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 76 QIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 76 ~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+.++++++++.+++.+++..++.|++++++++++++|+++.. +++|.++.+.|+.+..
T Consensus 270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVM 327 (358)
T ss_pred HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999 9999999999998875
No 34
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.86 E-value=6.6e-08 Score=82.34 Aligned_cols=221 Identities=15% Similarity=0.135 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhcC---CCCCcCHHH-HHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhH
Q 023321 25 NFVYVVYYNALGTFILLH-YFIYNTYRS---KGPVLTFSL-LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIP 99 (284)
Q Consensus 25 p~~~~~~R~~~a~l~l~~-~~~~~~~~~---~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~P 99 (284)
|..++.+..+.-.++-.. -... +++ .+.+.++++ .+++..+|+.+ ++...+.+++++|++.+.-++.-++.+
T Consensus 45 PLf~ts~h~~v~flfa~~~~~l~--~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGLSN~sl~yVtlSlYTM~KSSsi 121 (349)
T KOG1443|consen 45 PLFVTSLHLAVKFLFAALSRRLY--QCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGLSNWSLEYVTLSLYTMTKSSSI 121 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH--hccCCccccCCcHHHHHHHhhhhhhhh-hcccccccceeeeeeeeeeeeccccHH
Confidence 777777776665555443 1111 111 123445544 34566788775 899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCC---------CCCC--------CCCcc--
Q 023321 100 GITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSS---------PSNS--------NIQLP-- 160 (284)
Q Consensus 100 i~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~---------~~~~--------~~~~~-- 160 (284)
+|+.+++.++.-||.++. -..-+.+...|+.+++ ++....+.... .|+. +++..
T Consensus 122 ~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~ 194 (349)
T KOG1443|consen 122 LFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAK 194 (349)
T ss_pred HHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcccc
Confidence 999999999988999988 7777777777887775 44433221110 0110 00000
Q ss_pred ---c---hhhhhHHHHHHHHHHHHh-------hh----------hHHHHHHHHHHHHHHHHH---HHHHHhhcCccchhh
Q 023321 161 ---V---SEYSNWALGGLLLTVTCF-------SS----------ATWKIFQAIVGTVIRSSI---IAWCLQKKGPVFVAL 214 (284)
Q Consensus 161 ---~---~~~~~~~~g~~~~~~~~~-------~~----------~~~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~~ 214 (284)
. .....|..-.++.....+ .- ..+.+-.-.++..+++.+ -..-+.+++....++
T Consensus 195 ~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSI 274 (349)
T KOG1443|consen 195 RNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSI 274 (349)
T ss_pred CCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeH
Confidence 0 011122211111111111 00 011111123334444432 334568889999999
Q ss_pred hhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321 215 FKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 215 ~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~ 255 (284)
.....-+-+.+++..+.+|+++...|.|..+...|+.+...
T Consensus 275 aGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 275 AGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999843
No 35
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.86 E-value=1e-07 Score=83.87 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHHHH-HHHHhhhcCC-----CCCcCHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMS---NFVYVVYYNALGTFILLH-YFIYNTYRSK-----GPVLTFSLLCKFFMLGVLGI 72 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~---p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~ 72 (284)
++++++|+...+..|...+ ..+ ......+-.+.+.+.+.. .... +... ....+.+.+..++.+|+++.
T Consensus 149 l~aal~~a~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~i~~t 225 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMS-HSTRPAVMSLVVWSALIPIIPFFVASLIL--DGSATMIHSLVTIDMTTILSLMYLAFVAT 225 (299)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCccchhHHHHHHHHHHHHHHHHHHHHh--cCchhhhhhhccCCHHHHHHHHHHHHHHH
Confidence 5788999999999999763 232 233344444444443333 2222 1111 12345677888999999999
Q ss_pred HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
.+.+.++++++++.+++.++.+.+++|+++.++++++++|+++.. +++|..+.++|+.+..
T Consensus 226 ~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~ 286 (299)
T PRK11453 226 IVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV 286 (299)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 9999999999998764
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.85 E-value=6.8e-07 Score=76.29 Aligned_cols=188 Identities=20% Similarity=0.168 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321 59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (284)
Q Consensus 59 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 137 (284)
+.+..-++.|++ ....+...+.|.++...+.+..+.. .+-+.+.+.+.++++|.-+.+++ ..-..++++.++|+.+
T Consensus 43 ~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l 119 (269)
T PF06800_consen 43 TSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL 119 (269)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence 677777888888 5999999999999999999998885 77778999999999998887621 1123477888888877
Q ss_pred hhcccCCCCCCCCCCCCCCCC----------ccchhhh------------hHHHHHHHHHHHHhhhh-----------HH
Q 023321 138 VSLYKGPPLLGFSSPSNSNIQ----------LPVSEYS------------NWALGGLLLTVTCFSSA-----------TW 184 (284)
Q Consensus 138 i~~~~~~~~~~~~~~~~~~~~----------~~~~~~~------------~~~~g~~~~~~~~~~~~-----------~~ 184 (284)
....+.+.....+..+...+- ..|...+ ...+|.+. +++.+. .|
T Consensus 120 ts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~~~~~~~~lPqaiGm~i---~a~i~~~~~~~~~~~k~~~ 196 (269)
T PF06800_consen 120 TSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFHVSGWSAFLPQAIGMLI---GAFIFNLFSKKPFFEKKSW 196 (269)
T ss_pred hccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH---HHHHHhhcccccccccchH
Confidence 764333322211101111000 0010000 00111111 111110 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchh----hHHHHHHHHHHHHH
Q 023321 185 KIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLG----SLIGTVVIAFGFYA 252 (284)
Q Consensus 185 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~----~~~G~~li~~g~~l 252 (284)
.-...++.-.++-.+|..+.++.|.+..-.+..+.++++.+.|.+++||+=+.. .++|.++++.|.++
T Consensus 197 ~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 197 KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 112236666778899999999999999999999999999999999999987754 45688888887664
No 37
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.83 E-value=2.8e-07 Score=78.51 Aligned_cols=224 Identities=13% Similarity=0.128 Sum_probs=151.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHH
Q 023321 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGIT 102 (284)
Q Consensus 24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~ 102 (284)
+|....+...+.+.++-.. +..+ +++ ...++.|+++...++.+ .+...+-+.|++|.+=..-.+--++=-+-+
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~---k~~--~~~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV 123 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWW---KKE--LSGVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV 123 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcc---ccc--CCCCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence 5778888888888777655 3222 121 22234578888888886 888899999999998776666666666667
Q ss_pred HHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCC-CC----------Ccc-----------
Q 023321 103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNS-NI----------QLP----------- 160 (284)
Q Consensus 103 ~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~-~~----------~~~----------- 160 (284)
++...++.|.|.+.. +.....+.-.|+.++.+.+.+.+..-...... .| |..
T Consensus 124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~ 197 (327)
T KOG1581|consen 124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKK 197 (327)
T ss_pred HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhcc
Confidence 888899988888888 99999999999988876543331111000010 00 000
Q ss_pred -chhhhhHHHHH-----HHHHHHHhh-----hh----------HHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchH
Q 023321 161 -VSEYSNWALGG-----LLLTVTCFS-----SA----------TWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLG 219 (284)
Q Consensus 161 -~~~~~~~~~g~-----~~~~~~~~~-----~~----------~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~ 219 (284)
.........|. ++-...... .+ .+-+..--.+..+|+.+.++-+++.|+...+.++...
T Consensus 198 ~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttR 277 (327)
T KOG1581|consen 198 YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTR 277 (327)
T ss_pred CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHH
Confidence 00011111111 111111000 00 0112222566788999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321 220 TAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 259 (284)
Q Consensus 220 pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~ 259 (284)
-.++..++.+.+|.+++..||.|..++..|+.+-...+.+
T Consensus 278 k~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 278 KMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987655544
No 38
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.81 E-value=3.2e-08 Score=75.64 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHH--HhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 182 ATWKIFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVM--FLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 182 ~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~--~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
+...++.++++.++++.+|.+++++.+.+.+..+....++...+.++. ++||+++..+++|.++|+.|+++..++++
T Consensus 47 p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 47 ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 334677889999999999999999999999999999999888888885 89999999999999999999999876443
No 39
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.81 E-value=1.2e-08 Score=88.95 Aligned_cols=126 Identities=17% Similarity=0.151 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHH----HHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFV----YVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQ 76 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~----~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 76 (284)
++++++|+...+..|...+ +.+|.. ...+.+....+.+.+ ...+ + ..........+......+.+...+.+
T Consensus 150 l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~s~l~~ 225 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKR--H-GRSMFPYARQILPSATLGGLMIGGAY 225 (281)
T ss_pred HHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHH--h-ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999987642 444432 223333333222222 1111 1 11111122234455666666668899
Q ss_pred HHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321 77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (284)
Q Consensus 77 ~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 137 (284)
.++++++++.+++.++.+.+++|+++.+++++++||+++.. +++|..+.++|+.+
T Consensus 226 ~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l 280 (281)
T TIGR03340 226 ALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999 99999999999875
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.74 E-value=2.6e-08 Score=75.44 Aligned_cols=69 Identities=23% Similarity=0.493 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321 186 IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 254 (284)
Q Consensus 186 ~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~ 254 (284)
.+.+++.+.+++.++++++++.++++++.+.+++|+++.+++++++||+++..+++|.++++.|+++.+
T Consensus 57 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 57 LFLGLLGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hHhhccceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334466678999999999999999999999999999999999999999999999999999999998875
No 41
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.74 E-value=3.8e-08 Score=82.59 Aligned_cols=219 Identities=12% Similarity=0.142 Sum_probs=142.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHhHHHHHhhhhHHHHHH
Q 023321 26 FVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYS-SPTLASAMGNLIPGITFL 104 (284)
Q Consensus 26 ~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~-~~~~a~il~~~~Pi~~~l 104 (284)
..+++.+|++-+.-=++..-+ ....+++...|++. ....++ ...+.+.++++++- +...=.++-+..++-++.
T Consensus 34 NLITFaqFlFia~eGlif~sk--f~~~k~kiplk~Y~--i~V~mF--F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~ 107 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSK--FFTVKPKIPLKDYA--ITVAMF--FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMI 107 (330)
T ss_pred eehHHHHHHHHHHhceeeecc--ccccCCCCchhhhh--eehhee--eeeeeeccceeeecccceEEEEEecCcHHHHHH
Confidence 456666666554433331001 11112455554443 333333 56678888999884 555556677889999999
Q ss_pred HHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCccchhhhhHHHHHHHHHHHHhhhhHH
Q 023321 105 LAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQLPVSEYSNWALGGLLLTVTCFSSATW 184 (284)
Q Consensus 105 la~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 184 (284)
++|++.|+|-+.+ |..++.+.-+|+++.++.+...... ...+...++ -......|.+|...+..+.+..+..
T Consensus 108 ~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~-~~~~l~~~~-~~~~~~~w~iGi~lL~~al~~sa~m 179 (330)
T KOG1583|consen 108 LGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS-KLSGLDSGS-AQSDFFWWLIGIALLVFALLLSAYM 179 (330)
T ss_pred HHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh-hhcccccCc-ccccchHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888 9999999999998887544332221 001111111 1234567778776655444332221
Q ss_pred HHHH-----H-------------------------------------------------------HHHHHHHHHHHHHHH
Q 023321 185 KIFQ-----A-------------------------------------------------------IVGTVIRSSIIAWCL 204 (284)
Q Consensus 185 ~~~~-----~-------------------------------------------------------~~~~~l~~~~~~~~l 204 (284)
.+++ + ++...+.++...++.
T Consensus 180 giyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgV 259 (330)
T KOG1583|consen 180 GIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGV 259 (330)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhh
Confidence 1111 1 566666666666554
Q ss_pred ----hhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 205 ----QKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 205 ----~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
.+.++-.++++..+.-.++++++...++.++++..|+|.+++..|.++......
T Consensus 260 y~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~ 317 (330)
T KOG1583|consen 260 YILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWN 317 (330)
T ss_pred hhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 456777889999999999999999999999999999999999999999864433
No 42
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.5e-06 Score=71.48 Aligned_cols=240 Identities=14% Similarity=0.077 Sum_probs=152.0
Q ss_pred HHHHHHHHHhcCCCHHHHHH--HHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Q 023321 11 MITLGKAAMSSGMSNFVYVV--YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSP 88 (284)
Q Consensus 11 ~~~~~k~~~~~~~~p~~~~~--~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~ 88 (284)
+-+..|.++.+.=-|..+.. ++.+...+.+...-+. +--+.++++++..++.+...++. .++...-..+++|.+.
T Consensus 27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~--~lv~~~~l~~~~~kk~~P~~~lf-~~~i~t~~~slk~lnV 103 (314)
T KOG1444|consen 27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL--GLVNFRPLDLRTAKKWFPVSLLF-VGMLFTGSKSLKYLNV 103 (314)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh--ceeecCCcChHHHHHHccHHHHH-HHHHHHccccccccCc
Confidence 45667888764222444444 8888887776652111 11224667777788888888884 7888888999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCC-CCC----------------
Q 023321 89 TLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLG-FSS---------------- 151 (284)
Q Consensus 89 ~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~-~~~---------------- 151 (284)
..-+++-...|+++++....++|.|++++ .|.++...++|.......+-..... -.+
T Consensus 104 pm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~k 177 (314)
T KOG1444|consen 104 PMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVK 177 (314)
T ss_pred hHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988777777 9999998888887665322222111 000
Q ss_pred ---CCCCCCC---ccchhhhhHHHHHHHHH-HH---Hhh-----hh-----HHHHHHHHHHHHHHHHHHHHHHhhcCccc
Q 023321 152 ---PSNSNIQ---LPVSEYSNWALGGLLLT-VT---CFS-----SA-----TWKIFQAIVGTVIRSSIIAWCLQKKGPVF 211 (284)
Q Consensus 152 ---~~~~~~~---~~~~~~~~~~~g~~~~~-~~---~~~-----~~-----~~~~~~~~~~~~l~~~~~~~~l~~~~~~~ 211 (284)
.....++ ..++.......+..+.. .. +.. +. ....+.++.+-++ -++-..+.+..++..
T Consensus 178 k~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~i-sy~s~~ct~~~SAtT 256 (314)
T KOG1444|consen 178 KSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGI-SYTSFLCTRVNSATT 256 (314)
T ss_pred HhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHH-HHHHHHHHhhccccc
Confidence 0000000 00111111111111100 00 000 00 1112222333233 244456778889999
Q ss_pred hhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 212 VALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 212 ~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
.++.+...-..+.+.+.++.|++.++...+|..+-.+|-+++++.+.++
T Consensus 257 ~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~ 305 (314)
T KOG1444|consen 257 TTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRK 305 (314)
T ss_pred eeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhh
Confidence 9999988888888888888899999999999999998888887765443
No 43
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.72 E-value=7.9e-08 Score=84.69 Aligned_cols=130 Identities=18% Similarity=0.207 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCC---------cCHHHHHH-HHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSS-GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPV---------LTFSLLCK-FFMLGV 69 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~-~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~---------~~~~~~~~-~~~~g~ 69 (284)
++++++|+...+..|...++ +.+|..+.++....+.+.++| .... +...... ........ .+..+.
T Consensus 151 l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (302)
T TIGR00817 151 MISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFIT--EGPPFLPHGFMQAISGVNVTKIYTVSLVAAM 228 (302)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHH--cchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence 56889999999999998731 589999999999999999998 5543 2111000 01001111 223333
Q ss_pred HHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 70 LGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 70 ~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
......+.+++.+++++++..+++.....|++++++++++++|+++.. +++|..+.+.|+.+..
T Consensus 229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~ 292 (302)
T TIGR00817 229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYS 292 (302)
T ss_pred HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHH
Confidence 233444567788999999999999999999999999999999999999 9999999999998875
No 44
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.71 E-value=3.1e-07 Score=68.48 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
....++.+++..+.++..+++..|.+.+..+.++.++++.+++++++|||++.+ +++|+.+.++|+.++.
T Consensus 39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 344455777889999999999999999999999999999999999999999999 9999999999998874
No 45
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.66 E-value=6.5e-07 Score=78.69 Aligned_cols=128 Identities=13% Similarity=0.037 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSG-MSNFVYVVYYNALGTFILLHYFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQIFA 79 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~-~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (284)
+.++++|+...+..|....++ .+......+-...+.+...+.. . .... ........+..+...|+. ....+.++
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~g~~-t~i~~~~~ 230 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA-D--SSTSHMGQNPMSLNLLLIAAGIV-TTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc-c--CCcccccCCcHHHHHHHHHHHHH-HHHHHHHH
Confidence 467899999999999874311 2223333333333333322211 1 0000 011112223444445554 47899999
Q ss_pred HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
++++++.+++.++++.+..|++..++++++++|+++.. +++|..+.++|+.++.
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999988874
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.62 E-value=9.6e-07 Score=77.46 Aligned_cols=188 Identities=19% Similarity=0.282 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhccc
Q 023321 63 KFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYK 142 (284)
Q Consensus 63 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 142 (284)
..+..|+..+.....+.+.|+.+.|++..+.+....-++..+++..++|||++++ .+.|+.+++.|..++....
T Consensus 51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC
Confidence 3456677767888899999999999999999999999999999999999999999 9999999999998875433
Q ss_pred CCCCCCCCC---------CCCC-------------------C-CC--c-cchhhhhHHHHHHH---------HHHHHh--
Q 023321 143 GPPLLGFSS---------PSNS-------------------N-IQ--L-PVSEYSNWALGGLL---------LTVTCF-- 179 (284)
Q Consensus 143 ~~~~~~~~~---------~~~~-------------------~-~~--~-~~~~~~~~~~g~~~---------~~~~~~-- 179 (284)
.......+. ..+. . +. . .+..... ..|... .+-..+
T Consensus 125 ~~~~~~~t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g~~~i~vyi~i~s-l~Gs~tvl~~K~i~~~i~~~~~g 203 (300)
T PF05653_consen 125 PKEEPIHTLDELIALLSQPGFLVYFILVLVLILILIFFIKPRYGRRNILVYISICS-LIGSFTVLSAKAISILIKLTFSG 203 (300)
T ss_pred CCCCCcCCHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcchhcccceEEEEEEec-cccchhhhHHHHHHHHHHHHhcC
Confidence 222111110 0000 0 00 0 0000000 011100 000000
Q ss_pred -----hhhHHHHHHHHHHHHHHH-HHHHHHHhhcCccchhhhhchH-HHHHHHHHHHHhCCC--Cch----hhHHHHHHH
Q 023321 180 -----SSATWKIFQAIVGTVIRS-SIIAWCLQKKGPVFVALFKPLG-TAIAVFMAVMFLGET--PHL----GSLIGTVVI 246 (284)
Q Consensus 180 -----~~~~~~~~~~~~~~~l~~-~~~~~~l~~~~~~~~~~~~~l~-pv~a~i~~~~~~gE~--~~~----~~~~G~~li 246 (284)
.+..|.+....+.+.+.+ ...++++++.+++.+.++.+.. ...+.+-|.++++|. .+. ....|..++
T Consensus 204 ~~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~i 283 (300)
T PF05653_consen 204 DNQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLII 283 (300)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 011233333344444444 6667899999999888877654 445666677788875 334 335678888
Q ss_pred HHHHHHhhccc
Q 023321 247 AFGFYAVIWAQ 257 (284)
Q Consensus 247 ~~g~~l~~~~~ 257 (284)
+.|+++.+..|
T Consensus 284 i~GV~lL~~~~ 294 (300)
T PF05653_consen 284 IIGVFLLSSSK 294 (300)
T ss_pred HHhhheeeccC
Confidence 89999987544
No 47
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.58 E-value=2.1e-06 Score=74.44 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVV-YYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~-~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++++++|+...+..|... ..++..... +.+........+.... ... .....+.+......|+++....+.+++
T Consensus 160 l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~ 233 (292)
T COG0697 160 LAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLS---GFG-APILSRAWLLLLYLGVFSTGLAYLLWY 233 (292)
T ss_pred HHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhc---ccc-ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999876 467777666 4444233332222111 111 344556788899999998778999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
++++..+++.++.+.++.|++..++++++++|+++.+ +++|..+.+.|+.+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~ 286 (292)
T COG0697 234 YALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS 286 (292)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 9999999999998774
No 48
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.54 E-value=3.2e-06 Score=76.03 Aligned_cols=130 Identities=15% Similarity=0.154 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC-----------CCcCHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG-----------PVLTFSLLCK 63 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~-----------~~~~~~~~~~ 63 (284)
++++++|+...++.|..+++ +.++.....+-...++++++| .... +.... ..........
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~l~ 277 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF--EGKKWVPVWTNYTANMTNYTKGIIIF 277 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHhhhcccccchHHHHH
Confidence 46789999999999998852 256777777778899999888 5433 21100 0101111122
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
..+.+.+...+.+...|++++++++...++..+..|+++.++++++++|+++.. +++|..+.+.|+.+..
T Consensus 278 ~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 278 KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHHHh
Confidence 222333333444455557999999999999999999999999999999999999 9999999999997764
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.53 E-value=5.1e-07 Score=67.34 Aligned_cols=65 Identities=14% Similarity=0.009 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 254 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~ 254 (284)
.+..++++.++.+++|+.+.+.+..+..+.++.+.+.|++++||+++..+++|.++++.|+++..
T Consensus 44 ~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 44 LACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35567799999999999999999999999999999999999999999999999999999998875
No 50
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.52 E-value=4.9e-06 Score=65.52 Aligned_cols=128 Identities=21% Similarity=0.283 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC----C-----Cc--CHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSS------GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG----P-----VL--TFSLLCK 63 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~------~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~----~-----~~--~~~~~~~ 63 (284)
+.+.++-+...+..|...++ +.+|.+...+-...+.+++.| .... ++.+. . .. ..+.+..
T Consensus 6 l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (153)
T PF03151_consen 6 LASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLL--EGPQLSSFFSEIFGEELSSDPNFIFL 83 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhhHHHHhhhhhhcchHHHHHH
Confidence 45778889999999998765 689999999999999999999 5554 32220 0 01 2244566
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
+...|+++ ...+...+..++++++...++....-.+.+.++++++++|+++.+ ++.|+.+++.|+.+-
T Consensus 84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhee
Confidence 66667775 789999999999999999999999999999999999999999999 999999999999653
No 51
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.47 E-value=1.4e-06 Score=65.21 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 189 AIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
+.+....++.+|.+++++.+ ..++.+..+.|+++.++++++++|+++..++.|.+++..|+++..+.+.
T Consensus 41 g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 41 GLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34555588999999999999 5888999999999999999999999999999999999999999987543
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.42 E-value=3.5e-06 Score=73.81 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNA---LGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~---~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
++++++++...+..|.. +.||.+..+.... ++..++.+.. + +. ++. ..+..+...+.|++ ....+.+
T Consensus 158 l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~-~~~~~~~~~~~Gi~-~~ia~~~ 227 (290)
T TIGR00776 158 LMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH-I--LA--KPL-KKYAILLNILPGLM-WGIGNFF 227 (290)
T ss_pred HHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH-h--cc--cch-HHHHHHHHHHHHHH-HHHHHHH
Confidence 45788899999999964 4889888555444 3433333311 1 11 222 33344555668888 5999999
Q ss_pred HHHHhc-cccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhh----HHHHHHhhhhhhhh
Q 023321 79 AITGIK-YSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKI----LGTVVSIAGAFIVS 139 (284)
Q Consensus 79 ~~~al~-~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~----~g~~l~~~Gv~li~ 139 (284)
|+.+.+ +.+++.+.++.+..|+.+.+.+++++||+.+++ ++ +|.++.+.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence 999999 999999999999999999999999999999999 89 99999999998774
No 53
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.41 E-value=8.8e-06 Score=61.18 Aligned_cols=69 Identities=12% Similarity=0.211 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 189 AIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
.+...+++++++.+++|+++.+.+-.+ .-+.-+.+.+.+++++||+++..+++|..+++.|++......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 366778899999999999999988777 468899999999999999999999999999999999986544
No 54
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.29 E-value=2.2e-05 Score=58.20 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 189 AIVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
.++...++++++..++|+++.+.+-.+ .-+.-+.+.+.+++++||+++..+++|..+++.|+++.+..+
T Consensus 36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 367778899999999999999988766 568889999999999999999999999999999999986543
No 55
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.28 E-value=2.6e-05 Score=66.05 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHh---cCC----CHHHHHHHHHHHHHHHHHH-HHHHhhhcC---------------CCCCcCHHHHHHHH
Q 023321 9 VGMITLGKAAMS---SGM----SNFVYVVYYNALGTFILLH-YFIYNTYRS---------------KGPVLTFSLLCKFF 65 (284)
Q Consensus 9 g~~~~~~k~~~~---~~~----~p~~~~~~R~~~a~l~l~~-~~~~~~~~~---------------~~~~~~~~~~~~~~ 65 (284)
+.+-+.+|++-+ .+- +|+..+...|+.=++++.. .++| .+. +++++++....
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir--~~sn~~g~~s~~~~ilsq~~~pf~p~lfl--- 90 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIR--LRSNGQGVSSDLDSILSQDSSPFNPVLFL--- 90 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHH--HhhcCCCcccccccccccccCCCCcceec---
Confidence 455667777632 122 3777777777777777777 4444 111 11233332222
Q ss_pred HHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCC
Q 023321 66 MLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPP 145 (284)
Q Consensus 66 ~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~ 145 (284)
.=+++. .....++|.|+.+++++.-.++-...-+|+.+++.-+++.++..+ +|+|+....+|+..+...+-..
T Consensus 91 ~Pal~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~ 163 (372)
T KOG3912|consen 91 PPALCD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHL 163 (372)
T ss_pred ChHHHH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeeccc
Confidence 233443 455688999999999999999999999999999999999999999 9999999999998885332111
Q ss_pred CCCC--CCCCCCCCCcc---------------------chhhh------hHHHHHHHHHHHHhh--h------------h
Q 023321 146 LLGF--SSPSNSNIQLP---------------------VSEYS------NWALGGLLLTVTCFS--S------------A 182 (284)
Q Consensus 146 ~~~~--~~~~~~~~~~~---------------------~~~~~------~~~~g~~~~~~~~~~--~------------~ 182 (284)
.... .......|+.. +...+ .-.+|...+-..... + +
T Consensus 164 ~~~p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g 243 (372)
T KOG3912|consen 164 VTDPYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRG 243 (372)
T ss_pred ccCCccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCc
Confidence 1110 01112223220 00111 113332221111110 0 0
Q ss_pred -------HHH-------HHHHHHHHHHHHHHHHHH----HhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHH
Q 023321 183 -------TWK-------IFQAIVGTVIRSSIIAWC----LQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTV 244 (284)
Q Consensus 183 -------~~~-------~~~~~~~~~l~~~~~~~~----l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~ 244 (284)
.+. +........++-.+|+.+ -|..+++.=.++..+...+-=+++.....|.++..|+.|.+
T Consensus 244 ~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFl 323 (372)
T KOG3912|consen 244 VLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFL 323 (372)
T ss_pred chhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHH
Confidence 000 111233334444444432 36667777778888888888888888889999999999999
Q ss_pred HHHHHHHHhh
Q 023321 245 VIAFGFYAVI 254 (284)
Q Consensus 245 li~~g~~l~~ 254 (284)
+.+.|+++++
T Consensus 324 iLi~Gi~lY~ 333 (372)
T KOG3912|consen 324 ILIMGIILYN 333 (372)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 56
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.27 E-value=1.4e-05 Score=66.69 Aligned_cols=124 Identities=17% Similarity=0.090 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
+.+..||+...+..|..-. ..+-..-+..-+.+++++.+| -... ......+++....-+..|+++..+.|.+-.
T Consensus 154 l~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~~----ag~~l~~p~ll~laLgvavlSSalPYsLEm 228 (292)
T COG5006 154 LGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAAQ----AGPALFSPSLLPLALGVAVLSSALPYSLEM 228 (292)
T ss_pred HHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhhh----cchhhcChHHHHHHHHHHHHhcccchHHHH
Confidence 3578899999999999874 455556666778999999998 4322 112334556677778889999999999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhh
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAF 136 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ 136 (284)
.+++..|...-+++.++.|.+.++.++++++|+++.. ||.++...+++.+
T Consensus 229 iAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsa 278 (292)
T COG5006 229 IALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASA 278 (292)
T ss_pred HHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999 9999998887775
No 57
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.26 E-value=4.4e-06 Score=67.07 Aligned_cols=177 Identities=17% Similarity=0.212 Sum_probs=115.0
Q ss_pred HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCC
Q 023321 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP 152 (284)
Q Consensus 73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 152 (284)
.+.+..|..+++..++++++-+..+...|+.+++++.+|+|+..- ++++.++++.|+..+...++.-.+.+ .
T Consensus 64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~~a~e~--i 135 (290)
T KOG4314|consen 64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNEHADEI--I 135 (290)
T ss_pred ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccchhhhhh--h
Confidence 677889999999999999999999999999999999999999998 99999999999988864333322221 1
Q ss_pred CC--CCCCc----cch-------------hhhhH--HHHHHHHHHHHh----------------hhhHHHHHHHHHHHHH
Q 023321 153 SN--SNIQL----PVS-------------EYSNW--ALGGLLLTVTCF----------------SSATWKIFQAIVGTVI 195 (284)
Q Consensus 153 ~~--~~~~~----~~~-------------~~~~~--~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~l 195 (284)
|+ ..++. .|. +...+ .+|..=+....+ .+..|-...+.-.-.+
T Consensus 136 Gi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~l 215 (290)
T KOG4314|consen 136 GIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSL 215 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHH
Confidence 11 01110 000 00000 011100000000 0001111111111122
Q ss_pred HH-HHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 196 RS-SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 196 ~~-~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
++ .+.+.++....|-..++-+....+.....+.++-+-..+...+.|..+++.|.++.....
T Consensus 216 AFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 216 AFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 22 455677888888888888888888888999776565677788899999999999887543
No 58
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.17 E-value=1.1e-05 Score=61.68 Aligned_cols=70 Identities=20% Similarity=0.408 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHH--HhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVF--FRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
....|+.++.+.+.++.++++..|++.+..+.+..+.++.+.++. ++||+++.+ +++|+.+.++|+.++.
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 467888888999999999999999999999999999888888885 799999999 9999999999998875
No 59
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.09 E-value=0.00011 Score=62.11 Aligned_cols=191 Identities=8% Similarity=0.150 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 61 LCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 61 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
|+.+.+++.+. ...+.+..-++.|.+=..-.+.-.+--+=+++.+.++.+.|-++. ..++..+..+|.+++++
T Consensus 106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTL 178 (367)
T KOG1582|consen 106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTL 178 (367)
T ss_pred hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhh
Confidence 45556666664 667778888888887555555555555556677888888888888 99999999999999987
Q ss_pred ccCCCCCCCCCCCCC--C---------CCc------------cchhhhhHHHHHHHHHHHHhh----hhHHH--------
Q 023321 141 YKGPPLLGFSSPSNS--N---------IQL------------PVSEYSNWALGGLLLTVTCFS----SATWK-------- 185 (284)
Q Consensus 141 ~~~~~~~~~~~~~~~--~---------~~~------------~~~~~~~~~~g~~~~~~~~~~----~~~~~-------- 185 (284)
.+...+-.++..|.. . |+. ......++.+|..+++...+. +..|.
T Consensus 179 ADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~ 258 (367)
T KOG1582|consen 179 ADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVR 258 (367)
T ss_pred cccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHh
Confidence 665544333322210 0 110 001123445555555443321 11111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 186 ----IFQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 186 ----~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
.+.--..+.+|...-..-++..|+..++.+....-.+++++++++|..+++.....|..++..|+++-.+.++
T Consensus 259 tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 259 TYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 1111334455555556667888999999999999999999999999999999999999999999999877663
No 60
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.04 E-value=1.7e-05 Score=66.62 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 252 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l 252 (284)
++...++..+..+.+|+.++...+.....+++++.+++++++||+++..+++|..+++.|+++
T Consensus 159 ~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 159 GLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 566777888899999999999999999999999999999999999999999999999988765
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.96 E-value=0.00021 Score=52.06 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHhhcCccch-hhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFV-ALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~-~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
++...++|.+...++|+++.+.+ ++..-+..+.+.+.|+++|||+++..+++|..+++.|++..+..
T Consensus 37 ~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 37 IVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 67778899999999999998865 56677888999999999999999999999999999999988754
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.00011 Score=63.49 Aligned_cols=187 Identities=19% Similarity=0.289 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccC
Q 023321 64 FFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKG 143 (284)
Q Consensus 64 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~ 143 (284)
.+..|++.+.......|.|+.+.|++..+.+..++-+..++++..++|||++.. ..+|+.++++|-.+++. ..
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-ha 138 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HA 138 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ec
Confidence 345788888999999999999999999999999999999999999999999999 99999999999988863 33
Q ss_pred CCCCCCCCC-CC--CCCCc---cc---------------h--hhhhH--HHHHHHHHHHHh-------------------
Q 023321 144 PPLLGFSSP-SN--SNIQL---PV---------------S--EYSNW--ALGGLLLTVTCF------------------- 179 (284)
Q Consensus 144 ~~~~~~~~~-~~--~~~~~---~~---------------~--~~~~~--~~g~~~~~~~~~------------------- 179 (284)
+........ .. ...+. .| . ..... ..-.++.+.+.+
T Consensus 139 P~e~~i~t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~ 218 (335)
T KOG2922|consen 139 PKEQEIESVEEVWELATEPGFLVYVIIIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN 218 (335)
T ss_pred CcccccccHHHHHHHhcCccHHHHHHHHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence 332211100 00 00000 00 0 00000 000000011000
Q ss_pred ---hhh-HHHHHHHHHHHHHHHH--HHHHHHhhcCccchhhhhchH-HHHHHHHHHHHhCCC--Cch----hhHHHHHHH
Q 023321 180 ---SSA-TWKIFQAIVGTVIRSS--IIAWCLQKKGPVFVALFKPLG-TAIAVFMAVMFLGET--PHL----GSLIGTVVI 246 (284)
Q Consensus 180 ---~~~-~~~~~~~~~~~~l~~~--~~~~~l~~~~~~~~~~~~~l~-pv~a~i~~~~~~gE~--~~~----~~~~G~~li 246 (284)
.++ .|.... .+.+...+. -.+++++..+++.++++.|.. ..++++.+.+++.|- .+. ....|...+
T Consensus 219 ~ql~~~~ty~~~l-~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti 297 (335)
T KOG2922|consen 219 NQLFYPLTWIFLL-VVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTI 297 (335)
T ss_pred cccccHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHh
Confidence 011 122222 333333333 346899999999888887754 566777788888874 333 345688889
Q ss_pred HHHHHHhhcccc
Q 023321 247 AFGFYAVIWAQG 258 (284)
Q Consensus 247 ~~g~~l~~~~~~ 258 (284)
+.|+.++...|.
T Consensus 298 ~~G~flL~~~kd 309 (335)
T KOG2922|consen 298 FLGIFLLHRTKD 309 (335)
T ss_pred hheeeEeeeecc
Confidence 999999865443
No 63
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=97.91 E-value=3.6e-05 Score=66.12 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321 193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 254 (284)
Q Consensus 193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~ 254 (284)
....+.+|++++++.+++.++.+.+..|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999988764
No 64
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.89 E-value=6.8e-05 Score=55.51 Aligned_cols=111 Identities=18% Similarity=0.061 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
|++++++||...++.|.+.. +.++..-.. |..-....++ + .+.+ ...+.-.-.....|+
T Consensus 1 ~l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~Ll----~-------------n~~y--~ipf~lNq~GSv~f~ 59 (113)
T PF10639_consen 1 LLLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKFLL----L-------------NPKY--IIPFLLNQSGSVLFF 59 (113)
T ss_pred CeeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHHHH----H-------------hHHH--HHHHHHHHHHHHHHH
Confidence 57789999999999999985 555444331 3222221111 1 1121 223333466778899
Q ss_pred HHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 81 TGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 81 ~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
+.+...+.+.+..+. ++.=+++++.++++.+|..+++ .++|+.+.++|+.+.
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC 112 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence 999999999999885 7888889999988877777777 899999999999764
No 65
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.85 E-value=0.0004 Score=50.99 Aligned_cols=66 Identities=15% Similarity=0.365 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhhcCccchh-hhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVA-LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~-~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~ 255 (284)
++...++|++...++|+++.+.+- +..-+.-+.+.+.|++++||++++.+++|..+++.|++..+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 666788999999999999988764 455588899999999999999999999999999999998754
No 66
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.82 E-value=0.0052 Score=54.78 Aligned_cols=248 Identities=15% Similarity=0.061 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHHH--HHHH-hhhcCCCCCcCHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVY-YNALGTFILLH--YFIY-NTYRSKGPVLTFSLLCKFFMLGVLGICLVQI 77 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~-R~~~a~l~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 77 (284)
++++++||+.++-.|. . ++.+=..+ +. -..++.++.-. .... +.......+.+.+.+..-++.|++ .+..+.
T Consensus 13 ~i~~~~~GS~~~p~K~-~-k~w~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~-W~iG~i 88 (345)
T PRK13499 13 LIGGASSGSFYAPFKK-V-KKWSWETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL-WGIGGI 88 (345)
T ss_pred HHHHHHhhcccccccc-c-CCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH-HHhhhh
Confidence 5688999999999999 3 34552222 11 11111111110 0110 000011123456677777888888 499999
Q ss_pred HHHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcc---cccccccchhhHHHHHHhhhhhhhhc----ccCCCCCC-
Q 023321 78 FAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKV---AIRSRSSQAKILGTVVSIAGAFIVSL----YKGPPLLG- 148 (284)
Q Consensus 78 ~~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~---~~~~~~~~~~~~g~~l~~~Gv~li~~----~~~~~~~~- 148 (284)
.++.++++...+.+..+. .++-+...++..++++|-. +.. -...-.+|+++.++|+.+... .+.+....
T Consensus 89 ~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~ 166 (345)
T PRK13499 89 TYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKK 166 (345)
T ss_pred hHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999999999999998665 5999999999999988765 221 112267888999999988864 22111100
Q ss_pred CCCCCCCC---------------------CCc------------cchhhhhHH---HHHHHHHH-HHh-------h----
Q 023321 149 FSSPSNSN---------------------IQL------------PVSEYSNWA---LGGLLLTV-TCF-------S---- 180 (284)
Q Consensus 149 ~~~~~~~~---------------------~~~------------~~~~~~~~~---~g~~~~~~-~~~-------~---- 180 (284)
....+... +.. .+...+.+. .|.+..-. -+. .
T Consensus 167 ~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 167 AEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred ccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 00000000 000 011111221 22221110 000 0
Q ss_pred -h-hH-----HHH----HHHHHHHHHHHHHHHHHHhhcCccchhh---hh-chHHHHHHHHHHHHhCCCCc------hhh
Q 023321 181 -S-AT-----WKI----FQAIVGTVIRSSIIAWCLQKKGPVFVAL---FK-PLGTAIAVFMAVMFLGETPH------LGS 239 (284)
Q Consensus 181 -~-~~-----~~~----~~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~-~l~pv~a~i~~~~~~gE~~~------~~~ 239 (284)
. .. +.- ...++.-.+++..|..+-++.+...... +. .+..+++.++|. ++||.=+ ...
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l 325 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVL 325 (345)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHH
Confidence 0 00 111 1123444556677778778886654444 44 777799999998 5999755 566
Q ss_pred HHHHHHHHHHHHHhhcc
Q 023321 240 LIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 240 ~~G~~li~~g~~l~~~~ 256 (284)
++|.++++.|..+....
T Consensus 326 ~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 326 SLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88999999999887654
No 67
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.81 E-value=0.00058 Score=50.47 Aligned_cols=65 Identities=14% Similarity=0.217 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHhhcCccchh-hhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhh
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVA-LFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVI 254 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~-~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~ 254 (284)
+....++|++...++|+++.+.+- +..-+.-+.+.+.+++++||+++..+++|..+++.|++..+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 666778999999999999988764 44558888999999999999999999999999999999864
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.79 E-value=0.00034 Score=62.14 Aligned_cols=129 Identities=17% Similarity=0.057 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCC--CcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGP--VLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
+++++++|...+.-+.... +.|+.++..+--+++.++..+ .... +++... +.+.+... +.+...++....+.+
T Consensus 174 l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~il--e~~~i~~~~w~~~~~~-~~v~~~~~lf~~y~l 249 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAIL--ERSGIESIHWTSQVIG-LLVGYALCLFLFYSL 249 (334)
T ss_pred HHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHhe--ehhhhhccCCChhhHH-HHHHHHHHHHHHHHH
Confidence 6789999999999999985 789999998888899998888 5554 444332 23333333 333344455777778
Q ss_pred HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
.-..++++++....+=.-+..+++++++.+++|+++++. .++|.++.++|..+...
T Consensus 250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~ 305 (334)
T PF06027_consen 250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence 888889998887777778899999999999999999999 99999999999988753
No 69
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.66 E-value=5.9e-05 Score=63.52 Aligned_cols=68 Identities=10% Similarity=0.093 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
++-...|..+.+|++++.+-+.+.++....|+++.+++|.+++|+.+....+|..+.+.|+++..+..
T Consensus 104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 56667788889999999999999999999999999999999999999999999999999999998543
No 70
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=4.4e-05 Score=64.44 Aligned_cols=233 Identities=16% Similarity=0.067 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHH-H-hhhcCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhh
Q 023321 24 SNFVYVVYYNALGTFILLH-YFI-Y-NTYRSKGP--VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLI 98 (284)
Q Consensus 24 ~p~~~~~~R~~~a~l~l~~-~~~-~-~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~ 98 (284)
.|..+++++-+....+-.. ... + .+.+...| +++.+..+.+.-+.+.. .+...+..+.++|.+++---+--++.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL~yVgVaFYyvgRsLt 138 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCLKYVGVAFYYVGRSLT 138 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceehhhcceEEEEeccchh
Confidence 3788888887777555444 222 1 00111112 23333444445555542 55566778888888888777777888
Q ss_pred HHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCCCCCCCc----------------cch
Q 023321 99 PGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPSNSNIQL----------------PVS 162 (284)
Q Consensus 99 Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~----------------~~~ 162 (284)
-+|++++.++++|+|-+.. -..++.+.+.|..+-+ ..++..+..+..|...|-. ...
T Consensus 139 tvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv-dqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v 211 (347)
T KOG1442|consen 139 TVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV-DQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPV 211 (347)
T ss_pred hhHHHHhHHhhcccccccc------cceeehhheehheecc-ccccccCccchhhhHHHHHHHHHHHHHHHhhheecccc
Confidence 9999999999999998887 7777777777765443 2222222233223221100 001
Q ss_pred hhhhHHH-------HHHHHHHHHhh-------------hhHHHHHHHHHHHHHHHHHHH---HHHhhcCccchhhhhchH
Q 023321 163 EYSNWAL-------GGLLLTVTCFS-------------SATWKIFQAIVGTVIRSSIIA---WCLQKKGPVFVALFKPLG 219 (284)
Q Consensus 163 ~~~~~~~-------g~~~~~~~~~~-------------~~~~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~~~~~~l~ 219 (284)
.+..|.+ ..++.+..... ++.+.-..-.+++..+|.+-+ +=+|-.+|..-.+-....
T Consensus 212 ~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAk 291 (347)
T KOG1442|consen 212 GDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAK 291 (347)
T ss_pred cCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHH
Confidence 1111211 11111111100 011111111333344443332 225778888888888888
Q ss_pred HHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccccccc
Q 023321 220 TAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKESNMT 264 (284)
Q Consensus 220 pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~ 264 (284)
-..-.++++.+++|.-+..-|.|-++++.|-.++++.|+.|++++
T Consensus 292 a~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 292 AAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 888999999999999999999999999999999998777665554
No 71
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.64 E-value=0.00052 Score=49.37 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhh-hchHHHHHHHHHHHHhCCCCchhhHHHHHHH
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALF-KPLGTAIAVFMAVMFLGETPHLGSLIGTVVI 246 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~-~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li 246 (284)
+..-.+++.++.+++|+++.+.+-.+ .-+..+...+.|.+++||++|..++.|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 55778899999999999999998554 5689999999999999999999999999875
No 72
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.62 E-value=4.5e-06 Score=69.23 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAIT 81 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 81 (284)
++.++.||+...+.-.. +=.|.+-...-.+.+.++-+..++. ..|..+.+.+..-++-|++ ....+..-+.
T Consensus 8 L~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~-----~~p~~T~~~~iv~~isG~~-Ws~GQ~~Qfk 78 (288)
T COG4975 8 LLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLF-----VSPELTLTIFIVGFISGAF-WSFGQANQFK 78 (288)
T ss_pred HHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHhee-----ecCccchhhHHHHHHhhhH-hhhhhhhhhh
Confidence 35678999988776553 4556665555444444444433321 1345565566666666766 5889999999
Q ss_pred HhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCCC-CCCC--
Q 023321 82 GIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSPS-NSNI-- 157 (284)
Q Consensus 82 al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~-~~~~-- 157 (284)
|+++.+++.+..+.. ++-+-+.+++++.++|..+..|. -...+++++.++|+.+-. .+.+.+...+... ...+
T Consensus 79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~--IlG~iAliliviG~~lTs-~~~~~nk~~~~~~n~kkgi~ 155 (288)
T COG4975 79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQI--ILGFIALILIVIGIYLTS-KQDRNNKEEENPSNLKKGIV 155 (288)
T ss_pred heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhH--HHHHHHHHHHHHhheEee-eeccccccccChHhhhhhee
Confidence 999999999998775 88888899999999998776620 001234556666765553 2222211111111 1111
Q ss_pred -----Cc---cchhh------------hhHHHHHHHHHHHH-hhh-------hHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 023321 158 -----QL---PVSEY------------SNWALGGLLLTVTC-FSS-------ATWKIFQAIVGTVIRSSIIAWCLQKKGP 209 (284)
Q Consensus 158 -----~~---~~~~~------------~~~~~g~~~~~~~~-~~~-------~~~~~~~~~~~~~l~~~~~~~~l~~~~~ 209 (284)
+. .|... -....|.+.-.+.. ..- -.|.-...++.-..+-..+..+.++.|.
T Consensus 156 ~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~Gv 235 (288)
T COG4975 156 ILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGV 235 (288)
T ss_pred eeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhce
Confidence 00 11100 11122322111110 000 0122222355567788888999999999
Q ss_pred cchhhhhchHHHHHHHHHHHHhCCCCchhh----HHHHHHHHHHHHHhhc
Q 023321 210 VFVALFKPLGTAIAVFMAVMFLGETPHLGS----LIGTVVIAFGFYAVIW 255 (284)
Q Consensus 210 ~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~----~~G~~li~~g~~l~~~ 255 (284)
+..=.++-+..+.+.+-|.++++|+=+..+ ++|.++++.|..+...
T Consensus 236 At~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 236 ATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred eeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 988888889999999999999999988655 5688888888777654
No 73
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00013 Score=59.87 Aligned_cols=178 Identities=12% Similarity=0.093 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhcccCCCCCCCCCC
Q 023321 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPPLLGFSSP 152 (284)
Q Consensus 73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~ 152 (284)
......--.+++|.+...-++.-++..+..+.....++|.|++.. +..+.++.+..-..-...+..... ....
T Consensus 79 v~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~~-~~~~ 151 (309)
T COG5070 79 VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQASA-FKAQ 151 (309)
T ss_pred HHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHHH-HHhc
Confidence 344455668899999999999999999999999999999999988 888888777776554322211100 0000
Q ss_pred CCCCCCc---------------------c------chhhhhHHHHHHHHHHHHhhhhH----------------HHHHHH
Q 023321 153 SNSNIQL---------------------P------VSEYSNWALGGLLLTVTCFSSAT----------------WKIFQA 189 (284)
Q Consensus 153 ~~~~~~~---------------------~------~~~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~ 189 (284)
.+..|.. . .....+..+..-.++...+...- +..+.
T Consensus 152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~IS- 230 (309)
T COG5070 152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFIS- 230 (309)
T ss_pred ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHH-
Confidence 0111100 0 00011222222222222222111 12222
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
.+++.--.+|-.+.++-.+.+.-+.++.++-.-..+.|.+++||+.+...+....+=..+-.++...+.
T Consensus 231 gl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks 299 (309)
T COG5070 231 GLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS 299 (309)
T ss_pred HHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333335666788999999999999999999999999999999999888887776665555554443
No 74
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.47 E-value=0.00061 Score=51.27 Aligned_cols=68 Identities=24% Similarity=0.251 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 66 MLGVLGICLVQIFAITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 66 ~~g~~~~~~~~~~~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+..+.+++..+.++..++++.|.+.+-.+- ..--+.+++.+++++||+++.. +++|+.+.++|++.+-
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 344555688999999999999999988664 6889999999999999999999 9999999999998874
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.45 E-value=0.00082 Score=49.85 Aligned_cols=67 Identities=16% Similarity=0.248 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 67 LGVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 67 ~g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
..+.++.+.+.++..+++..|.+.+--+ ...--+.+.+.+++++||++++. +++|+.+.++|++.+-
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 4455678889999999999999988866 55888899999999999999999 9999999999998884
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.45 E-value=0.00049 Score=60.49 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
.+...++..+...++...+++.++++..+.-+++.+++..++||+++..++.|..+++.|..+...-.
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 55567788888899999999999999999999999999999999999999999999999998876433
No 77
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.41 E-value=0.0043 Score=45.83 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHhccccHhHHHH-HhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 69 VLGICLVQIFAITGIKYSSPTLASA-MGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 69 ~~~~~~~~~~~~~al~~~~~~~a~i-l~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
+.++...+.+...++++.|.+.+-- -...--+.+.+.+++++||++++. |++|+.+.+.|+..+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 4446788999999999999998875 445888899999999999999999 999999999999775
No 78
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.0011 Score=48.33 Aligned_cols=67 Identities=21% Similarity=0.195 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccHhHHH-HHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 66 MLGVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 66 ~~g~~~~~~~~~~~~~al~~~~~~~a~-il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
+..+.++...+.+.-.++++.|.+.+- +-...-.+.+.+.+++++||+.+.. +++|+.+.++|++.+
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 334445688899999999999998886 5556888999999999999999999 999999999999876
No 79
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.35 E-value=0.011 Score=50.85 Aligned_cols=125 Identities=14% Similarity=0.038 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC--CCCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321 3 LVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSK--GPVLTFSLLCKFFMLGVLGICLVQIFA 79 (284)
Q Consensus 3 ~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (284)
..++.||..+..=|.. ++|+.+=.+.-.+.-.+.-+. .+.. .... ..+-+.+.+..+...|... +.+-.+|
T Consensus 155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l--~~~~~~~~~~~~~~~~LLv~aG~vT-avpL~lf 228 (293)
T COG2962 155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFL--ADSGQFLQQNANSLWLLLVLAGLVT-AVPLLLF 228 (293)
T ss_pred HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHH--hcCchhhhcCCchHHHHHHHhhHHH-HHHHHHH
Confidence 3466777777766653 477776666665555554444 3322 2221 1113456778888899986 9999999
Q ss_pred HHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 80 ITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 80 ~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
..|-+++|.+...+++|..|....+++.++++|+++.. +..+.+..-+|+++..
T Consensus 229 ~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~ 282 (293)
T COG2962 229 AAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFS 282 (293)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999888988775
No 80
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.30 E-value=0.0013 Score=51.54 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321 193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~ 255 (284)
..+-....+..+++.+|...++...+..+...+.+++++||+++..++.|.++.+.|.+++++
T Consensus 91 ~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 91 AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 334456667789999999999999999999999999999999999999999999999988753
No 81
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.26 E-value=0.0062 Score=53.68 Aligned_cols=130 Identities=21% Similarity=0.191 Sum_probs=98.5
Q ss_pred hhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH-HHH--HhhhcCCC---CCcCHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFI--YNTYRSKG---PVLTFSLLCKFFMLGVLGICL 74 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~-~~~--~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 74 (284)
+++.++=|...+..+...+ .+.++.+..++-.+++.++..+ ... . ++-.+. ....+..+..++...+.+ ..
T Consensus 160 ~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~-~~~~~~~~f~~~~p~~~~~l~~~s~~~-~~ 237 (303)
T PF08449_consen 160 LLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPT-GEFRSAIRFISAHPSVLLYLLLFSLTG-AL 237 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHhHHHHHHHHHHHHHH-HH
Confidence 4556677888888888774 4789999999999999998887 544 2 011110 111223345555555554 66
Q ss_pred HHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 75 VQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 75 ~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
...+.+.-.+..++-..+++..+--+++.+++.++++++++.. +|.|+.+.+.|..+-.
T Consensus 238 g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~ 296 (303)
T PF08449_consen 238 GQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYS 296 (303)
T ss_pred HHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHH
Confidence 6677777889999999999999999999999999999999999 9999999999997764
No 82
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.19 E-value=0.0017 Score=55.40 Aligned_cols=67 Identities=10% Similarity=0.149 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccccc
Q 023321 193 TVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGK 259 (284)
Q Consensus 193 ~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~ 259 (284)
-.+...+.+.++++.+|+.-.++.....+++++++++++|.+++..||++..+...|+.+.......
T Consensus 27 Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 27 YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 3445577889999999999999999999999999999999999999999999999999988765443
No 83
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.17 E-value=0.0028 Score=46.55 Aligned_cols=64 Identities=13% Similarity=0.066 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 69 VLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 69 ~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
+.++...+.+...+++..|.+.+--+ ...--+.+.+.+++++||++++. +++|+.+.++|+..+
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 44568889999999999999888754 45888999999999999999999 999999999999876
No 84
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.13 E-value=0.014 Score=45.21 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023321 6 IGEVGMITLGKAAMSSGM-SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI 83 (284)
Q Consensus 6 ~~wg~~~~~~k~~~~~~~-~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 83 (284)
.+-+....+.-..-+ .. +|...++.-+..+.+.+.. .... +++.....++ .-++...-|++| .....+..+..
T Consensus 11 ~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~--~~~~~~~~~~-~p~w~~lGG~lG-~~~V~~~~~~v 85 (138)
T PF04657_consen 11 ALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLIT--GRPSLASLSS-VPWWAYLGGLLG-VFFVLSNIILV 85 (138)
T ss_pred HHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHh--cccccchhcc-CChHHhccHHHH-HHHHHHHHHHh
Confidence 333444444444443 34 4999999999999999887 5554 3322222222 224445578887 88888999999
Q ss_pred ccccHhHHHHH-hhhhHHHHHHHHHH----HhhhcccccccccchhhHHHHHHhhhhhh
Q 023321 84 KYSSPTLASAM-GNLIPGITFLLAVF----FRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (284)
Q Consensus 84 ~~~~~~~a~il-~~~~Pi~~~lla~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 137 (284)
+..+++.+..+ ..-+-+...++..+ .-|++++.+ |.+|+.+.++|+.+
T Consensus 86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL 138 (138)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence 99988877754 45777777787775 345667777 99999999999853
No 85
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.86 E-value=0.0049 Score=44.31 Aligned_cols=57 Identities=28% Similarity=0.250 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhccccHhHHHHH-hhhhHHHHHHHHHHHhhhcccccccccchhhHHHHH
Q 023321 68 GVLGICLVQIFAITGIKYSSPTLASAM-GNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVV 130 (284)
Q Consensus 68 g~~~~~~~~~~~~~al~~~~~~~a~il-~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l 130 (284)
.+.+++..+.++..++++.|.+.+-.+ ...-.+.+.+.+..++||+++.. |+.|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 344568889999999999999999654 56999999999999999999999 9999875
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.80 E-value=0.011 Score=50.89 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
++..+.+....++.|.. +++|.+..+=. .++.++-.. .... . +++ ...|..++-.+.|++ ....+.+++
T Consensus 144 l~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~--~--~~~-~~~k~~~~nil~G~~-w~ignl~~~ 213 (269)
T PF06800_consen 144 LISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLF--S--KKP-FFEKKSWKNILTGLI-WGIGNLFYL 213 (269)
T ss_pred HHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhc--c--ccc-ccccchHHhhHHHHH-HHHHHHHHH
Confidence 45566666666776652 57887776644 333333222 2111 1 112 222334555777887 489999999
Q ss_pred HHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhh
Q 023321 81 TGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGA 135 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv 135 (284)
.|.+....+.+-.+.++..+.+.+.+.+++||+=++| .-...++|+++.++|.
T Consensus 214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~k--e~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKK--EMIYTLIGLILIVIGA 266 (269)
T ss_pred HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchh--hHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999996655 2222334444444444
No 87
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.02 E-value=0.021 Score=42.41 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCccchhhhh-chHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHH
Q 023321 189 AIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYA 252 (284)
Q Consensus 189 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l 252 (284)
.......|...|++.+.+.+.+.+.++. .+.=+++++.++++.+|..+...++|+++++.|+.+
T Consensus 47 pf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 47 PFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3555677889999999999999999995 888899999997766666778889999999999865
No 88
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.08 E-value=0.15 Score=45.49 Aligned_cols=133 Identities=11% Similarity=0.167 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCC-CCCcCHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSS---GMSNFVYVVYYNALGTFILLH-YFIYNTYRSK-GPVLTFSLLCKFFMLGVLGICLVQ 76 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~---~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~ 76 (284)
++.++++|...++.|.=.++ .++-..+-.+--++..++++| .++.+..+.+ ..-.+..+...+++.++++.....
T Consensus 253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD 332 (416)
T KOG2765|consen 253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence 35678899999999887653 255555555557777888887 5544111111 122233456677888999999999
Q ss_pred HHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 77 IFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 77 ~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
.+|.+|.-.+++-.+++=+..+....++...++.+.++++. .++|.+..++|..++..
T Consensus 333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~ 390 (416)
T KOG2765|consen 333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI 390 (416)
T ss_pred HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence 99999999999999999888777778888888855556655 99999999999988753
No 89
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.65 E-value=0.074 Score=46.93 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHH-H-HHHHhhhcCCC-----CCcCHHHHHHHHHHHHHHHH
Q 023321 4 VEIGEVGMITLGKAAMS---SGMSNFVYVVYYNALGTFILL-H-YFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGIC 73 (284)
Q Consensus 4 ~~~~wg~~~~~~k~~~~---~~~~p~~~~~~R~~~a~l~l~-~-~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~ 73 (284)
+.+..+.-.++.|..+. ..+++.....+..-.+.++++ | .... ++... ...+.+ ........++. .
T Consensus 171 s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~sv~~-f 246 (316)
T KOG1441|consen 171 SNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV--EGNKFVGFLTAPWFVT-FLILLLNSVLA-F 246 (316)
T ss_pred HHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh--cccceeeeeccccchh-hHHHHHHHHHH-H
Confidence 44556677788888873 358999999999999999999 7 4433 22211 012222 23333344443 6
Q ss_pred HHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 74 LVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 74 ~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
..+...|..+.++++-+-.+....==.++.+.++++++|+++.. +..|..++++|+.+-.
T Consensus 247 ~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 247 LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence 77888899999999988888887777777888989999999999 9999999999998764
No 90
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=94.47 E-value=0.034 Score=45.12 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccc
Q 023321 195 IRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 195 l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~ 258 (284)
.+.+.|..++++++++.++.+..-.-.+..+++++.+|+++....++..++.+.|+++..+.++
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN 128 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN 128 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc
Confidence 3467899999999999999999999999999999999999999999999999999998876543
No 91
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.46 E-value=0.15 Score=45.09 Aligned_cols=63 Identities=11% Similarity=0.032 Sum_probs=57.0
Q ss_pred HHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 198 SIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
-+++.++.+.+++...+...+....++++.+++++++++..||...++...|+.+......++
T Consensus 107 nl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~ 169 (345)
T KOG2234|consen 107 NLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSP 169 (345)
T ss_pred hHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC
Confidence 378889999999999999999999999999999999999999999999999999988444433
No 92
>PRK13499 rhamnose-proton symporter; Provisional
Probab=94.15 E-value=1.7 Score=38.99 Aligned_cols=74 Identities=23% Similarity=0.161 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHhHHHH---Hh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 65 FMLGVLGICLVQIFAITGIKYSSPTLASA---MG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 65 ~~~g~~~~~~~~~~~~~al~~~~~~~a~i---l~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
.+.|++ ....+.++..|-+..+.+.+.+ +. .+.-++..+-+. ++||+=+..||+.+.-++|+++.++|..++.+
T Consensus 264 ~l~G~~-W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~ 341 (345)
T PRK13499 264 ALAGVM-WYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGL 341 (345)
T ss_pred HHHHHH-HHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 444444 5777888888888876554444 55 555566666666 59999776678888899999999999988753
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.13 E-value=0.3 Score=40.80 Aligned_cols=59 Identities=17% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhh
Q 023321 73 CLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFI 137 (284)
Q Consensus 73 ~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l 137 (284)
+....+..+.+++.++..-++...+.++++.+++.++++|+++.. ++.|..+.+.|+.+
T Consensus 163 a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~l 221 (222)
T TIGR00803 163 VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATFL 221 (222)
T ss_pred HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeEe
Confidence 666778999999999999999999999999999999999999999 99999999988743
No 94
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=1.7 Score=33.92 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHH-HHhhhhHHH
Q 023321 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLAS-AMGNLIPGI 101 (284)
Q Consensus 24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~-il~~~~Pi~ 101 (284)
+|....+.-+..+.+++.. .+.+ +++.......+.-++.++-|++| ..+-...........++... ++..-+-+.
T Consensus 33 spl~As~isf~vGt~~L~~l~l~~--~~~~~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~ 109 (150)
T COG3238 33 SPLLASLISFLVGTVLLLILLLIK--QGHPGLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM 109 (150)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHh--cCCCchhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence 5999999999999888887 5554 33332222233345667777776 66666667777777665544 455677777
Q ss_pred HHHHHHHH-hhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 102 TFLLAVFF-RMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 102 ~~lla~~~-~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
.+++..+= +++ .+|+++..+++|+++.++|+.++
T Consensus 110 glliD~fG~~g~---~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 110 GLLIDHFGWFGV---PKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred HHHHHhhcccCC---CcCCCCHHHHHHHHHHHHHHHHh
Confidence 77776542 222 12344555999999999995554
No 95
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.026 Score=49.14 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
+.+.+...+|-...+-+....+++.+++++.+..+.+++++..+++|+++....+|+++.++|-.+...-.+++
T Consensus 68 w~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e 141 (335)
T KOG2922|consen 68 WAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKE 141 (335)
T ss_pred HHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcc
Confidence 34456667777777777888899999999999999999999999999999999999999999888876544443
No 96
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.82 E-value=0.2 Score=41.88 Aligned_cols=108 Identities=18% Similarity=0.145 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC---CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhH
Q 023321 24 SNFVYVVYYNALGTFILLH-YFIYNTYRSKG---PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIP 99 (284)
Q Consensus 24 ~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~P 99 (284)
+-..+.+.-.+.+.+.+.. ..+. ++-.+. ....+..++.+..+++.+ ++.+.+.|.-+.+-++-.-+++..+--
T Consensus 201 ~g~~MM~~~NlwStL~Lg~g~lfT-GElweF~yF~~RhP~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRK 278 (337)
T KOG1580|consen 201 TGTSMMFYTNLWSTLYLGAGLLFT-GELWEFFYFVQRHPYVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRK 278 (337)
T ss_pred CchhhHHHHHHHHHHHhhhhheeh-hhHHHHHHHHHhccHHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHH
Confidence 3455666667777777665 4432 011000 111234567777788776 888999999999999988999999999
Q ss_pred HHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 100 GITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 100 i~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+|+++.+.++++.+++.| ||+|..+.|.|...=.
T Consensus 279 fFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 279 FFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence 999999999999999999 9999999999886543
No 97
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.02 E-value=0.78 Score=39.90 Aligned_cols=109 Identities=12% Similarity=0.133 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh
Q 023321 22 GMSNFVYVVYYNALGTFILLHYFIYNTYRSKG-----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN 96 (284)
Q Consensus 22 ~~~p~~~~~~R~~~a~l~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~ 96 (284)
.+++.++.+.-.+...+.-....+. .+... -...++-++.+++....+ +..+.+.|+-++.-++-.-+.++-
T Consensus 199 k~s~~~mM~~vNLf~~i~~~~~li~--qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 199 KVSSLHMMFGVNLFSAILNGTYLIL--QGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred CccHhHHHHHHHHHHHHHHHHhhhc--CCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence 5889999998888888776652222 11111 122344456666666666 777899999999988888889999
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 97 ~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
+-=++++.++.+.++.++++. +|.|+.+.|.|..+=.
T Consensus 276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~ 312 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI 312 (327)
T ss_pred HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence 999999999999999999999 9999999998886543
No 98
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=91.71 E-value=13 Score=35.60 Aligned_cols=43 Identities=7% Similarity=-0.056 Sum_probs=21.9
Q ss_pred chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 023321 211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAV 253 (284)
Q Consensus 211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~ 253 (284)
.........|+-+.++|.+.-.-..+....++++.++.+..+.
T Consensus 348 ~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 348 YQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 3344555677777777766433333333344444444444443
No 99
>PRK02237 hypothetical protein; Provisional
Probab=91.68 E-value=1.6 Score=31.86 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhcC---cc-chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 190 IVGTVIRSSIIAWCLQKKG---PV-FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~---~~-~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
++...++-.+|.......+ .. .-+...-.-.+.++++++..-|++|+..+++|..+.+.|+.+..+..
T Consensus 36 ~~pg~~~L~lfg~llTl~p~~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 36 LLPGALSLALFGWLLTLQPDAAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHHHHHHhcCCchhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 4445555555555555444 22 23566777888999999999999999999999999999998775543
No 100
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=90.35 E-value=0.23 Score=41.90 Aligned_cols=77 Identities=14% Similarity=0.204 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 59 SLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 59 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
|..+.-.+-|++- +..+.+++.|.+....+++=-+..+..+.+.+-+.+++|||=+++ .=...++|+++.+.|..++
T Consensus 207 K~t~~nii~G~~W-a~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkk--Em~~v~iGiilivvgai~l 283 (288)
T COG4975 207 KYTWLNIIPGLIW-AIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKK--EMVYVIIGIILIVVGAILL 283 (288)
T ss_pred HHHHHHHhhHHHH-HhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchh--hhhhhhhhHHHHHHHhhhh
Confidence 3456667888884 899999999999888888888888999999999999999997777 1122344555555555544
No 101
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=89.62 E-value=6.7 Score=32.84 Aligned_cols=110 Identities=20% Similarity=0.229 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC----CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhh
Q 023321 22 GMSNFVYVVYYNALGTFILLH-YFIYNTYRSKG----PVLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGN 96 (284)
Q Consensus 22 ~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~ 96 (284)
+...++..++..+++..+++. .... +.... ..++.....+..+-|+.. .+...+--|.++-++...-+++..
T Consensus 182 Nf~d~dtmfYnNllslPiL~~~s~~~--edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGA 258 (309)
T COG5070 182 NFKDFDTMFYNNLLSLPILLSFSFLF--EDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGA 258 (309)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHh--ccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHH
Confidence 577899999999999999887 4433 22211 234554556777777776 555566778888888888999998
Q ss_pred hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 97 LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 97 ~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
+.-.-..+-+.++++|+.++. ++.++.+++...++-..
T Consensus 259 LNKlp~alaGlvffdap~nf~------si~sillGflsg~iYav 296 (309)
T COG5070 259 LNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYAV 296 (309)
T ss_pred hhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHHH
Confidence 888888889999999999999 99999999988877653
No 102
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=88.97 E-value=2.8 Score=30.57 Aligned_cols=68 Identities=13% Similarity=0.272 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhhcCcc---chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPV---FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~---~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
++...++..+|..-....++. .-+...-.-.+.++++++.+-|++|+..+++|..+.+.|+.+..+..
T Consensus 35 ~~~G~~~L~lfg~l~Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 35 LLPGALSLALFGWLLTLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HhhHHHHHHHHHHHhhcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 444455555555444433322 23566777888999999999999999999999999999998876543
No 103
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.72 E-value=2.7 Score=30.56 Aligned_cols=113 Identities=14% Similarity=0.047 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHH--HHHHHHHHHHHHHHHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYV--VYYNALGTFILLHYFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~--~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
|+.+.++||...++.|.... +++...-. -+|.+. + +.+ ...++ |.+.+-. +++ -....+
T Consensus 8 lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~~l----------q--e~~-tl~l~---w~Y~iPF-llN-qcgSal 68 (125)
T KOG4831|consen 8 LVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMIAL----------Q--EMK-TLFLN---WEYLIPF-LLN-QCGSAL 68 (125)
T ss_pred HHHHHHHHccccHHHHHHHh-hHhhccCchHHHHHHH----------H--HHH-HHHHh---HHHHHHH-HHH-HhhHHH
Confidence 46788999999999999863 44322111 111110 0 100 01111 1222222 222 334577
Q ss_pred HHHHhccccHhHHHHHh-hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 79 AITGIKYSSPTLASAMG-NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~-~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
||.-++.++-+.+..+. ++.-.|+++++..+ +|+...++ .+.|..+.++|+.+.
T Consensus 69 y~~tLa~a~islavpv~nsltfafta~~G~~L-GE~~~g~~-----a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 69 YYLTLASAPISLAVPVTNSLTFAFTAIFGKAL-GEETQGGL-----ALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhcCCceeeeeecchhHHHHHHHHHHHh-ccccccce-----eehhhhHHhhhhhhe
Confidence 88889999998888655 56777888888776 55544442 899999999998765
No 104
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.26 E-value=4.5 Score=35.50 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcC-----CCC-CcCHHHHHHHHHHHHHHHHHHHHH
Q 023321 7 GEVGMITLGKAAMS-SGMSNFVYVVYYNALGTFILLH-YFIYNTYRS-----KGP-VLTFSLLCKFFMLGVLGICLVQIF 78 (284)
Q Consensus 7 ~wg~~~~~~k~~~~-~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~-----~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 78 (284)
.=+...+..|+-.+ .+.+.+++.++..+.+.+.+.. .... ... ..+ ......+..+.+-++++ .+-..+
T Consensus 168 ~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~--ge~~~l~~~~~~~~~~~~~~~~~lScv~g-f~isy~ 244 (314)
T KOG1444|consen 168 TTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFIT--GELDALSLNFDNWSDSSVLVVMLLSCVMG-FGISYT 244 (314)
T ss_pred HHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHh--cchHHHHhhcccccchhHHHHHHHHHHHH-HHHHHH
Confidence 33455566777664 3678888999999998887776 4333 110 011 11223455666667776 555666
Q ss_pred HHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 79 AITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 79 ~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
-++..+..++..-++.....-..+.+...++.+++.++. ..+|+.++++|-.+-.
T Consensus 245 s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~ 299 (314)
T KOG1444|consen 245 SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS 299 (314)
T ss_pred HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence 778888888877777776666667777777888999999 9999999999997764
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.81 E-value=2.9 Score=36.17 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
.++-..|..+.+.++....++....+.-...+++-+++.-+++.+++..||+|+..+..|++.+-..
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 3444556667777888888888888888889999999999999999999999999999998887543
No 106
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=82.76 E-value=1.6 Score=31.66 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHHHHHh
Q 023321 224 VFMAVMFLGETPHLGSLIGTVVIAFGFYAV 253 (284)
Q Consensus 224 ~i~~~~~~gE~~~~~~~~G~~li~~g~~l~ 253 (284)
+.++++++||++++.+..|.++++.+++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 456778999999999999999999887754
No 107
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=81.90 E-value=6.4 Score=30.34 Aligned_cols=66 Identities=8% Similarity=0.069 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCccchhhhh-chHHHHHHHHHHH-H---hCCCCchhhHHHHHHHHHHHHH
Q 023321 187 FQAIVGTVIRSSIIAWCLQKKGPVFVALFK-PLGTAIAVFMAVM-F---LGETPHLGSLIGTVVIAFGFYA 252 (284)
Q Consensus 187 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~l~pv~a~i~~~~-~---~gE~~~~~~~~G~~li~~g~~l 252 (284)
+.+++....-..+..+..+++|++.+.... .-+-+.+.+++.+ + -.++++..+++|.++++.|+++
T Consensus 68 ~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 68 YLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 334555566667777888888888766554 4466777888875 2 3467889999999999999864
No 108
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=81.65 E-value=47 Score=31.19 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=18.8
Q ss_pred CchhhHHHHHHHHHHHHHhhcc
Q 023321 235 PHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 235 ~~~~~~~G~~li~~g~~l~~~~ 256 (284)
++..|++.+.++++|++++.+.
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~ 275 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILA 275 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999998887653
No 109
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.81 E-value=4.9 Score=28.79 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhc
Q 023321 223 AVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 223 a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~ 255 (284)
-+.++.++++|++.+.++.|..+++.+++...+
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 345788999999999999999999999987753
No 110
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=79.56 E-value=21 Score=25.94 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhcCcc----chhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhccc
Q 023321 190 IVGTVIRSSIIAWCLQKKGPV----FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~----~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~ 257 (284)
++...++-.+|..-....++. .-+...-+-.+.++++.++.=|..|+.++++|..+.+.|+.++....
T Consensus 35 ~l~g~~sL~lf~~llT~~~~~a~GRvYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 35 LLPGALSLALFGWLLTLQPAAAFGRVYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHHHHHHHHHHHHHHHcCCchhhhhHHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 445556666666666555544 23556677788899999999999999999999999999987776543
No 111
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=76.29 E-value=55 Score=28.93 Aligned_cols=127 Identities=13% Similarity=0.102 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCC--------CCc---CHHHHHHHHH
Q 023321 3 LVEIGEVGMITLGKAAMSSG----MSNFVYVVYYNALGTFILLH-YFIYNTYRSKG--------PVL---TFSLLCKFFM 66 (284)
Q Consensus 3 ~~~~~wg~~~~~~k~~~~~~----~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~--------~~~---~~~~~~~~~~ 66 (284)
.++++=|.-|.+++..+.++ -+|++..+.---.-.+.++| .+.- ++... .+- -.+....+..
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~f--EG~~~~~~s~~f~~~d~~~~~rv~g~i~l 248 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLF--EGLHLITSSSIFRFQDTGLILRVIGLISL 248 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHH--cccccchhhhHHHhcCccHHHHHHHHHHH
Confidence 46677788888888887532 24666666555556666666 4432 22111 011 1122233344
Q ss_pred HHHHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 67 LGVLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 67 ~g~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
.|.+. .+.-..-+.=+..++.-..++..-.-=+.+.+++.+..+|+++.. .|.|..++..|+.+-
T Consensus 249 ~g~la-F~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 249 GGLLA-FLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH 313 (349)
T ss_pred HHHHH-HHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence 44443 222233333344454444444444556778889999999999998 999999999999665
No 112
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=72.33 E-value=6 Score=30.57 Aligned_cols=25 Identities=16% Similarity=0.273 Sum_probs=19.5
Q ss_pred hcCccchhhhhchHHHHHHHHHHHH
Q 023321 206 KKGPVFVALFKPLGTAIAVFMAVMF 230 (284)
Q Consensus 206 ~~~~~~~~~~~~l~pv~a~i~~~~~ 230 (284)
--+.-+.+.+.|+.|.++.+.+.++
T Consensus 71 EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 71 EKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999998888765
No 113
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=71.55 E-value=14 Score=31.88 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HHHHh-hhcCCCC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHhhh
Q 023321 22 GMSNFVYVVYYNALGTFILLH-YFIYN-TYRSKGP--VLTFSLLCKFFMLGVLGICLVQIFAITGIKYSSPTLASAMGNL 97 (284)
Q Consensus 22 ~~~p~~~~~~R~~~a~l~l~~-~~~~~-~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~il~~~ 97 (284)
.-+..++.++.+.++..+++. +.... ..+.... +-..+...+.++.++.+ .+...+...=++.-++..++.+...
T Consensus 217 ~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~g-ylG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 217 PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAG-YLGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHh-HhhHHHHHHHHHHhchhHHHHHHHh
Confidence 456678888888888888776 44430 0011111 11223455555555554 4444444444555678888888888
Q ss_pred hHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhccc
Q 023321 98 IPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYK 142 (284)
Q Consensus 98 ~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~ 142 (284)
--..+.+++++++.++++.+ ...+.++.+.|+.+=...+
T Consensus 296 RKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhcccC
Confidence 88999999999999999998 8999999999998765444
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=70.10 E-value=8.6 Score=28.04 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHhhcCccchhhhhch-HHHHHHHHHHHHhCCC-CchhhHHHHHHHHHHHHHh
Q 023321 190 IVGTVIRSSIIAWCLQKKGPVFVALFKPL-GTAIAVFMAVMFLGET-PHLGSLIGTVVIAFGFYAV 253 (284)
Q Consensus 190 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~l-~pv~a~i~~~~~~gE~-~~~~~~~G~~li~~g~~l~ 253 (284)
.+..-.+..+|+.-+++.+-+.+..+.+. .-.++.+.|.. +||. .....+.|..+++.|+.+.
T Consensus 59 FllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~-LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 59 FLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKA-LGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHH-hccccccceeehhhhHHhhhhhhe
Confidence 33345567889999999999888777654 66678888866 6665 5567789999999998874
No 115
>PRK15049 L-asparagine permease; Provisional
Probab=68.65 E-value=1.1e+02 Score=29.02 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 023321 60 LLCKFFML 67 (284)
Q Consensus 60 ~~~~~~~~ 67 (284)
+..+....
T Consensus 252 ~iPrAi~~ 259 (499)
T PRK15049 252 MVPKAINS 259 (499)
T ss_pred HHHHHHHH
Confidence 34444433
No 116
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=67.40 E-value=14 Score=31.73 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHhhcccccc
Q 023321 237 LGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 237 ~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
...++|++++++|..+...-|.++
T Consensus 116 ~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 116 WLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred HHHHHHHHHHHHHHHheeeecCCC
Confidence 467899999999988876654433
No 117
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=64.84 E-value=19 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.536 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 023321 240 LIGTVVIAFGFYAV 253 (284)
Q Consensus 240 ~~G~~li~~g~~l~ 253 (284)
++|..++..|++..
T Consensus 90 i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 90 IIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 118
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=64.04 E-value=1.2e+02 Score=27.95 Aligned_cols=41 Identities=24% Similarity=0.492 Sum_probs=25.0
Q ss_pred HhhhhHHHHHHHHHHHhhhcc--cccccccchhhHHHHHHhhhhhhhhc
Q 023321 94 MGNLIPGITFLLAVFFRMEKV--AIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 94 l~~~~Pi~~~lla~~~~~E~~--~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
+....|-+.+=+.+-++-.|+ +.| -+...++..+|.+++.+
T Consensus 66 ladi~P~l~~Kl~aP~fi~~v~y~~R------i~~~~~l~~~g~l~va~ 108 (402)
T PF02487_consen 66 LADILPSLLVKLIAPFFIHRVPYWIR------ILICVALSAAGMLLVAF 108 (402)
T ss_pred HHHHHHHHHHHHHhHhhhhhccchHH------HHHHHHHHHHHHhheee
Confidence 334667666534333332343 344 78888888899888763
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=61.82 E-value=60 Score=23.72 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=34.8
Q ss_pred HHhccccHhHHHHHhh-hhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 81 TGIKYSSPTLASAMGN-LIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 81 ~al~~~~~~~a~il~~-~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
.|.+.-++++--+++= ..-..-+.++.+++||++++. ...|..+.+.++.++
T Consensus 54 iG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n------~l~af~~i~~av~fi 106 (108)
T PF04342_consen 54 IGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWN------YLWAFLCILGAVYFI 106 (108)
T ss_pred hhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHH------HHHHHHHHHHhhhee
Confidence 3444445555555553 333344567788999999999 899888877776543
No 120
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=60.14 E-value=1.4e+02 Score=27.69 Aligned_cols=12 Identities=17% Similarity=0.074 Sum_probs=5.6
Q ss_pred cHhHHHHHhhhh
Q 023321 87 SPTLASAMGNLI 98 (284)
Q Consensus 87 ~~~~a~il~~~~ 98 (284)
+...++.+....
T Consensus 274 s~~~~g~~~~~~ 285 (455)
T TIGR00892 274 DEYEAAFLLSII 285 (455)
T ss_pred CHHHHHHHHHHH
Confidence 445555544433
No 121
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.50 E-value=2.9 Score=36.02 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=53.2
Q ss_pred HHHHHHHHhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcc
Q 023321 197 SSIIAWCLQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
-...++++++++++.-.+-..+..++++++.+++++++-+.....++.+|+.|..+-..+
T Consensus 116 I~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdq 175 (347)
T KOG1442|consen 116 ISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQ 175 (347)
T ss_pred hhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheecccc
Confidence 345678899999999999999999999999999999999999899999999998876643
No 122
>PRK02237 hypothetical protein; Provisional
Probab=58.74 E-value=16 Score=26.75 Aligned_cols=41 Identities=10% Similarity=0.161 Sum_probs=32.7
Q ss_pred HhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 94 MGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 94 l~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
.-....+.+.+-.+..=|+|+++. .++|..++++|+.++.+
T Consensus 65 YGGvyI~~Sl~W~w~vdg~~Pd~~------D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 65 YGGVYVAGSLLWLWVVDGVRPDRW------DWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhHHHHHHHHHHHHhcCcCCChh------HHHhHHHHHHhHHHhee
Confidence 444666677777788877888877 99999999999988853
No 123
>PRK11469 hypothetical protein; Provisional
Probab=57.23 E-value=13 Score=30.23 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=33.2
Q ss_pred ccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHHHHHhh
Q 023321 209 PVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT-VVIAFGFYAVI 254 (284)
Q Consensus 209 ~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~-~li~~g~~l~~ 254 (284)
+...+.++.+.|..+...|..+-+-.....+|+|. +++..|..+..
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457778889999999998766555556678875 55567888775
No 124
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=56.05 E-value=25 Score=29.13 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=32.8
Q ss_pred cCccchhhhhchHHHHHHHHHHHHhCCCCc-hhhHHH-HHHHHHHHHHhh
Q 023321 207 KGPVFVALFKPLGTAIAVFMAVMFLGETPH-LGSLIG-TVVIAFGFYAVI 254 (284)
Q Consensus 207 ~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~-~~~~~G-~~li~~g~~l~~ 254 (284)
..+...+.++.+.|..+...|..+-+--+. ..+++| .+++..|..+..
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 344567777888899898888775543333 356776 466678888774
No 125
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=55.80 E-value=9.4 Score=28.78 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 023321 240 LIGTVVIAFGFYA 252 (284)
Q Consensus 240 ~~G~~li~~g~~l 252 (284)
+.|++++++.++.
T Consensus 74 ~aGvIg~Illi~y 86 (122)
T PF01102_consen 74 MAGVIGIILLISY 86 (122)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 126
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=54.41 E-value=1.6e+02 Score=26.40 Aligned_cols=130 Identities=18% Similarity=0.113 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-H--HHHhhhcCC---CCCcCHHHHHHHHHHHHHHHHHHHH
Q 023321 4 VEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-Y--FIYNTYRSK---GPVLTFSLLCKFFMLGVLGICLVQI 77 (284)
Q Consensus 4 ~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~--~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~ 77 (284)
.+++=|+.++-.|..- +.+=...-....+++.++ .| . +.. .... ....+.+.+.+....|++- ++...
T Consensus 15 Gg~~~~sfy~P~kkvk--~WsWEs~Wlv~gi~swli-~P~~~a~l~--ip~~~~i~~~~~~~~l~~~~l~G~lW-GIGgl 88 (344)
T PF06379_consen 15 GGFASGSFYVPFKKVK--GWSWESYWLVQGIFSWLI-VPWLWALLA--IPDFFSIYSATPASTLFWTFLFGVLW-GIGGL 88 (344)
T ss_pred HHHHhhhhccchhhcC--CccHHHHHHHHHHHHHHH-HHHHHHHHh--CCcHHHHHHhCChhHHHHHHHHHHHH-hcchh
Confidence 3445555556666553 354444444444444433 34 2 221 1100 1223334567778888884 88899
Q ss_pred HHHHHhccccHhHHH-HHhhhhHHHHHHHHHHHhhhcc-cccccccchhhHHHHHHhhhhhhhh
Q 023321 78 FAITGIKYSSPTLAS-AMGNLIPGITFLLAVFFRMEKV-AIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 78 ~~~~al~~~~~~~a~-il~~~~Pi~~~lla~~~~~E~~-~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
.|=.+++|+..+... +...+.-.+-.++-.++.++-- -..++-.+..++|++++++|+.+..
T Consensus 89 tfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g 152 (344)
T PF06379_consen 89 TFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICG 152 (344)
T ss_pred hHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHh
Confidence 999999999877665 4445666666666555543210 0112234458999999999999885
No 127
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=52.80 E-value=17 Score=26.52 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 93 AMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 93 il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
..-....+.+.+-.+.+=|+|+++. .++|..++++|+.++.+
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~------D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRW------DWIGAAICLVGVAIILF 103 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChH------HHHhHHHHHHhHHheEe
Confidence 3445667777777888877888877 99999999999998853
No 128
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=51.26 E-value=2.2e+02 Score=27.03 Aligned_cols=50 Identities=12% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHh---hhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 90 LASAMGNLIPGITFLLAVFFR---MEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 90 ~a~il~~~~Pi~~~lla~~~~---~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
..+..++..|+++++++.++- .+-.+.+|.|+...-.++.+.++|..++.
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~ 377 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLI 377 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 456788899999998886542 23223445677667777777777777664
No 129
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.80 E-value=1.2e+02 Score=23.77 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHhhcCccc-hhhhhchHHHHHHHHHHHHhC----CCCchhhHHHHHHHHHHHHHhhcc
Q 023321 200 IAWCLQKKGPVF-VALFKPLGTAIAVFMAVMFLG----ETPHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 200 ~~~~l~~~~~~~-~~~~~~l~pv~a~i~~~~~~g----E~~~~~~~~G~~li~~g~~l~~~~ 256 (284)
-.....+.|++. ......-+-+.+++++.+=+. .+++...++|.++++.|+++..++
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 345556666654 444555667777777765333 458899999999999996665543
No 130
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=50.67 E-value=5.2 Score=34.56 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCccchhhhhc
Q 023321 194 VIRSSIIAWCLQKKGPVFVALFKP 217 (284)
Q Consensus 194 ~l~~~~~~~~l~~~~~~~~~~~~~ 217 (284)
+++.++|.+.+++.+++.-+++.+
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaF 142 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAF 142 (381)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445566666777777776655443
No 131
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=49.75 E-value=16 Score=31.70 Aligned_cols=63 Identities=13% Similarity=0.185 Sum_probs=48.5
Q ss_pred HHHHHHHhh-cCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhhcccccc
Q 023321 198 SIIAWCLQK-KGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 198 ~~~~~~l~~-~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~g~~l~~~~~~~~ 260 (284)
.+.+++++. ++.-.--++..-.++.+.++++++.|.+-+..|+....++-+|+++.+..+.++
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 344455542 344445566677888999999999999999999999999999999988765543
No 132
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=44.16 E-value=98 Score=26.73 Aligned_cols=121 Identities=14% Similarity=0.015 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023321 7 GEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGIKY 85 (284)
Q Consensus 7 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~ 85 (284)
+++.+++.-.... ++.|-.++...--+.+.++-.+ .... ++....+.+..-....+...+.+++.+.+.-.=++.
T Consensus 177 lYaVSNv~EEflv-kn~d~~elm~~lgLfGaIIsaIQ~i~~---~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k~ 252 (336)
T KOG2766|consen 177 LYAVSNVSEEFLV-KNADRVELMGFLGLFGAIISAIQFIFE---RHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIKT 252 (336)
T ss_pred eeeeccccHHHHH-hcCcHHHHHHHHHHHHHHHHHHHHhhh---ccceeeEeehHHHHHHHHHHHHHHHHHHhhHHheec
Confidence 4455555555555 4788889888888999988887 6553 333333333211223333455555555555555666
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhh
Q 023321 86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVS 139 (284)
Q Consensus 86 ~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~ 139 (284)
.++....+-.-++-.++.++ ..++-++.|. -.++......|.++-.
T Consensus 253 ~~aT~~nlslLTsDmwsl~i--~~FgYhv~wL------Y~laF~~i~~GliiYs 298 (336)
T KOG2766|consen 253 NSATMFNLSLLTSDMWSLLI--RTFGYHVDWL------YFLAFATIATGLIIYS 298 (336)
T ss_pred CCceEEEhhHhHHHHHHHHH--HHHhcchhhh------hHHHHHHHHHhhEEee
Confidence 55554444444556666666 4456668888 8888888888886663
No 133
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=43.73 E-value=31 Score=26.26 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.6
Q ss_pred ccchhhhhchHHHHHHHHHHHH
Q 023321 209 PVFVALFKPLGTAIAVFMAVMF 230 (284)
Q Consensus 209 ~~~~~~~~~l~pv~a~i~~~~~ 230 (284)
..+.+.+.|+-|++.++.+.++
T Consensus 67 ~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 67 LLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888888888888653
No 134
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=41.95 E-value=7.9 Score=33.91 Aligned_cols=114 Identities=12% Similarity=0.053 Sum_probs=64.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHH-hhhc---CCC-------CCcCHHHHHHHHHHH
Q 023321 1 MALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIY-NTYR---SKG-------PVLTFSLLCKFFMLG 68 (284)
Q Consensus 1 m~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~-~~~~---~~~-------~~~~~~~~~~~~~~g 68 (284)
|+++.+|||+.....|.+-. .....+...+-+.++.++... ..+. .... .+. .+-++..+...+.-|
T Consensus 1 M~itmlcwGSW~nt~kL~~r-~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGG 79 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAER-RGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGG 79 (336)
T ss_pred CeeehhhhcChHHHHHHHHh-cCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhh
Confidence 78899999999999999875 344334466667776655544 2222 0011 111 122333344444444
Q ss_pred HHHHHHHHHHHHHHhccccHhHHHHHhhhhHHHHHHHHHHHhhhcccc
Q 023321 69 VLGICLVQIFAITGIKYSSPTLASAMGNLIPGITFLLAVFFRMEKVAI 116 (284)
Q Consensus 69 ~~~~~~~~~~~~~al~~~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~ 116 (284)
++ ..+.+++.-+|+.+...+.+-++.....+..-..---++..|.++
T Consensus 80 vv-fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~ 126 (336)
T PF07168_consen 80 VV-FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINR 126 (336)
T ss_pred Hh-hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCC
Confidence 44 477788888888888777766655433332222222334555543
No 135
>PF15102 TMEM154: TMEM154 protein family
Probab=41.42 E-value=33 Score=26.64 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q 023321 240 LIGTVVIAFGFYAVIWAQGKE 260 (284)
Q Consensus 240 ~~G~~li~~g~~l~~~~~~~~ 260 (284)
++++++++..++++.+.||++
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred HHHHHHHHHHHHheeEEeecc
Confidence 344444555555555444433
No 136
>PRK10489 enterobactin exporter EntS; Provisional
Probab=41.19 E-value=2.7e+02 Score=25.08 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhc
Q 023321 240 LIGTVVIAFGFYAVIW 255 (284)
Q Consensus 240 ~~G~~li~~g~~l~~~ 255 (284)
+.|....+.+++....
T Consensus 383 ~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 383 ASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455555555555443
No 137
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=38.68 E-value=30 Score=24.22 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=21.1
Q ss_pred CCCchhhHHHHHHHHHHHHHhhccccc
Q 023321 233 ETPHLGSLIGTVVIAFGFYAVIWAQGK 259 (284)
Q Consensus 233 E~~~~~~~~G~~li~~g~~l~~~~~~~ 259 (284)
-..++..++|.++++.|..++..+..+
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~ 29 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFR 29 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 356788999999999999988754433
No 138
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=37.91 E-value=46 Score=23.94 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=7.9
Q ss_pred cccccCCCCCC
Q 023321 272 ESLNQKIPPLK 282 (284)
Q Consensus 272 ~~~~~~~~~~~ 282 (284)
.+++|.+|+++
T Consensus 87 ~~d~EraPLLn 97 (97)
T PF08611_consen 87 STDRERAPLLN 97 (97)
T ss_pred CCccccccccC
Confidence 56778888764
No 139
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=36.02 E-value=82 Score=27.05 Aligned_cols=131 Identities=15% Similarity=0.011 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 023321 2 ALVEIGEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH-YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAI 80 (284)
Q Consensus 2 ~~~~~~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 80 (284)
+++.+++|++++-.|..- .-|++.+.++......+.-+. ...+ ..++. ..+.++-|.+ .+..+.+..
T Consensus 6 ~va~~~fGs~~vPvK~~~--~gDg~~fQw~~~~~i~~~g~~v~~~~-----~~p~f----~p~amlgG~l-W~~gN~~~v 73 (254)
T PF07857_consen 6 IVAVLFFGSNFVPVKKFD--TGDGFFFQWVMCSGIFLVGLVVNLIL-----GFPPF----YPWAMLGGAL-WATGNILVV 73 (254)
T ss_pred HHHHHHhcccceeeEecc--CCCcHHHHHHHHHHHHHHHHHHHHhc-----CCCcc----eeHHHhhhhh-hhcCceeeh
Confidence 467899999999999764 467877776654444333333 2222 12332 2333444555 588888889
Q ss_pred HHhccccHhHHHHHhhhhHHHHH-HHHHH-HhhhcccccccccchhhHHHHHHhhhhhhhhcccCCC
Q 023321 81 TGIKYSSPTLASAMGNLIPGITF-LLAVF-FRMEKVAIRSRSSQAKILGTVVSIAGAFIVSLYKGPP 145 (284)
Q Consensus 81 ~al~~~~~~~a~il~~~~Pi~~~-lla~~-~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~~~~~~ 145 (284)
-.++....+.+..+-++.-..+- .-+.+ +++++...-+ -.....+|+.+.++|..+..+.+.+.
T Consensus 74 pii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~-~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 74 PIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPS-SPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccc-hhHHHHHHHHHHHHHHHheeeecCCC
Confidence 99999999999888776444333 33322 3433322211 12347889999999998886655443
No 140
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=34.79 E-value=73 Score=17.47 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=8.5
Q ss_pred chhhHHHHHHHHHHHHH
Q 023321 236 HLGSLIGTVVIAFGFYA 252 (284)
Q Consensus 236 ~~~~~~G~~li~~g~~l 252 (284)
+...++|..++..+.++
T Consensus 11 ~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556677444444333
No 141
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=34.24 E-value=42 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=13.0
Q ss_pred cchhhhhchHHHHHHHHHHH
Q 023321 210 VFVALFKPLGTAIAVFMAVM 229 (284)
Q Consensus 210 ~~~~~~~~l~pv~a~i~~~~ 229 (284)
.+.+.+.|+.|+++++.+..
T Consensus 75 lkaa~lvYllPLl~li~ga~ 94 (154)
T PRK10862 75 LRSALLVYMTPLVGLFLGAA 94 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776644
No 142
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=33.14 E-value=50 Score=24.05 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=28.2
Q ss_pred hhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhhhhhhc
Q 023321 96 NLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIVSL 140 (284)
Q Consensus 96 ~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li~~ 140 (284)
......+.+-.+..=|.|+.+. .|+|..++++|+.++.+
T Consensus 66 GvyI~~sL~W~~~Vdg~~pdr~------D~~Ga~icl~G~~vil~ 104 (109)
T COG1742 66 GVYIAASLAWLWVVDGVRPDRY------DWIGAAICLAGVAVILF 104 (109)
T ss_pred chHHHHHHHHHHHHcCcCCcHH------HhhhHHHHHhceeeeEe
Confidence 3445555555666656666666 99999999999988854
No 143
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=30.75 E-value=37 Score=23.86 Aligned_cols=20 Identities=15% Similarity=0.487 Sum_probs=13.9
Q ss_pred chhhHHHHHHHHHHHHHhhc
Q 023321 236 HLGSLIGTVVIAFGFYAVIW 255 (284)
Q Consensus 236 ~~~~~~G~~li~~g~~l~~~ 255 (284)
+...++|.++.+.|..+...
T Consensus 3 N~~Fl~~l~lliig~~~~v~ 22 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFVF 22 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44567888888777777653
No 144
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=30.56 E-value=4.4e+02 Score=24.41 Aligned_cols=40 Identities=15% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHHhccccHhHHHHHhhhhHHHHHHHHHH--Hhhhccccc
Q 023321 78 FAITGIKYSSPTLASAMGNLIPGITFLLAVF--FRMEKVAIR 117 (284)
Q Consensus 78 ~~~~al~~~~~~~a~il~~~~Pi~~~lla~~--~~~E~~~~~ 117 (284)
.|.......++++..++.....++..+..-+ +..+|...|
T Consensus 32 iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~k 73 (412)
T PF01306_consen 32 IWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLK 73 (412)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTC
T ss_pred HHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhh
Confidence 3444456788999999999999988887765 356777766
No 145
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=30.11 E-value=1.1e+02 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=18.7
Q ss_pred ccccHhHHHHHhhhhHHHHHHHHHHH
Q 023321 84 KYSSPTLASAMGNLIPGITFLLAVFF 109 (284)
Q Consensus 84 ~~~~~~~a~il~~~~Pi~~~lla~~~ 109 (284)
..-+.-.++.+.|..|++.++.+..+
T Consensus 70 ~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 70 AEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567888888898888877655
No 146
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.81 E-value=2.2e+02 Score=20.60 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=25.0
Q ss_pred HHHHHHHhhhcccccccccchhhHHHHHHhhhhhhh
Q 023321 103 FLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 103 ~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
..++.+++||++++. .+.+..+...|+.++
T Consensus 84 v~Fsvfyl~epl~~~------~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWN------YLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHH------HHHHHHHHHHHHHHh
Confidence 467888999999999 899988877777665
No 147
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=26.48 E-value=3.6e+02 Score=22.06 Aligned_cols=31 Identities=16% Similarity=0.349 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHhHH
Q 023321 60 LLCKFFMLGVLGICLVQIFAITGIKYSSPTLA 91 (284)
Q Consensus 60 ~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a 91 (284)
.+++.+..++.. .......+......|+...
T Consensus 145 ~~~k~~~~~~~~-~~~w~~~~~~~~~lp~~in 175 (206)
T PF06570_consen 145 SWWKYILISVLA-MVLWIVIFVLTSFLPPVIN 175 (206)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHccccCC
Confidence 344444545443 3444444555555665533
No 148
>PRK09528 lacY galactoside permease; Reviewed
Probab=26.36 E-value=4.8e+02 Score=23.47 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=24.6
Q ss_pred cccHhHHHHHhhhhHHHHHHHHHHH--hhhccccc
Q 023321 85 YSSPTLASAMGNLIPGITFLLAVFF--RMEKVAIR 117 (284)
Q Consensus 85 ~~~~~~a~il~~~~Pi~~~lla~~~--~~E~~~~~ 117 (284)
..++.+.+++.....+...+...+. +-||.++|
T Consensus 42 g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r 76 (420)
T PRK09528 42 GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK 76 (420)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 4577888888888777777777665 34888877
No 149
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=26.33 E-value=1.1e+02 Score=23.07 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=16.1
Q ss_pred cHhHHHHHhhhhHHHHHHHHHHH
Q 023321 87 SPTLASAMGNLIPGITFLLAVFF 109 (284)
Q Consensus 87 ~~~~a~il~~~~Pi~~~lla~~~ 109 (284)
+...++++.|..|++..+++.++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777788888777777665
No 150
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=26.23 E-value=64 Score=26.50 Aligned_cols=34 Identities=6% Similarity=0.122 Sum_probs=21.5
Q ss_pred HHHHHHhCCCCchhhHHHHHHHH--HHHHHhhcccc
Q 023321 225 FMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQG 258 (284)
Q Consensus 225 i~~~~~~gE~~~~~~~~G~~li~--~g~~l~~~~~~ 258 (284)
-+|..+++|-.-+-+..|..+.+ .|.+...++++
T Consensus 134 ~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~~ 169 (198)
T PRK06638 134 AIGILLFTDYLLPFELASVLLLVAMVGAIVLARRER 169 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 34666777776677777876653 56666665443
No 151
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.11 E-value=1.1e+02 Score=19.13 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=5.0
Q ss_pred HHHHHHhhccc
Q 023321 247 AFGFYAVIWAQ 257 (284)
Q Consensus 247 ~~g~~l~~~~~ 257 (284)
++|+.+.+..|
T Consensus 15 lLg~~I~~~~K 25 (50)
T PF12606_consen 15 LLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHhh
Confidence 44444444433
No 152
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=25.97 E-value=1.8e+02 Score=22.64 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=27.1
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHHhhhcccccccccchhhHHHHHHhhhh
Q 023321 86 SSPTLASAMGNLIPGITFLLAVFFRMEKVAIRSRSSQAKILGTVVSIAGA 135 (284)
Q Consensus 86 ~~~~~a~il~~~~Pi~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv 135 (284)
-+.-.++.+.|..|++..+++.++ -+++... +.+.++.++.|.
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L-a~~L~~~------e~~~~~~~~lg~ 114 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL-AQYLFFS------ELIVIFGAFLGL 114 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh------hHHHHHHHHHHH
Confidence 345567888999999998888765 2333333 444444444444
No 153
>PF15471 TMEM171: Transmembrane protein family 171
Probab=25.39 E-value=99 Score=26.68 Aligned_cols=19 Identities=16% Similarity=0.413 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHHHhhcc
Q 023321 238 GSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 238 ~~~~G~~li~~g~~l~~~~ 256 (284)
.|++|-++++.|+......
T Consensus 162 lQImGPlIVl~GLCFFVVA 180 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVA 180 (319)
T ss_pred hhhhhhHHHHHhhhhhhee
Confidence 6899999999998776544
No 154
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=24.62 E-value=1.1e+02 Score=20.36 Aligned_cols=18 Identities=22% Similarity=0.021 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHhhcc
Q 023321 239 SLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 239 ~~~G~~li~~g~~l~~~~ 256 (284)
.+++..+++.|++++...
T Consensus 6 iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777776543
No 155
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=24.17 E-value=2.2e+02 Score=20.75 Aligned_cols=21 Identities=0% Similarity=-0.029 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHhhcccc
Q 023321 238 GSLIGTVVIAFGFYAVIWAQG 258 (284)
Q Consensus 238 ~~~~G~~li~~g~~l~~~~~~ 258 (284)
..++.++.++++++++..+..
T Consensus 55 ~~~~~~~w~~~A~~ly~~RP~ 75 (103)
T PF11027_consen 55 MFMMMMLWMVLAMALYLLRPS 75 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCch
Confidence 455666677777777766544
No 156
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=23.16 E-value=1.8e+02 Score=23.88 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=25.5
Q ss_pred ccchhhhhchHHHHHHHHHHHH---hCCCCchhhHHHHHHHH-HHHHHhh
Q 023321 209 PVFVALFKPLGTAIAVFMAVMF---LGETPHLGSLIGTVVIA-FGFYAVI 254 (284)
Q Consensus 209 ~~~~~~~~~l~pv~a~i~~~~~---~gE~~~~~~~~G~~li~-~g~~l~~ 254 (284)
+.+++......-++..+.|-.+ +|-+++.-++.|.++.. .|.=+..
T Consensus 40 a~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 40 ARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444444444444443 57777778888765554 5555443
No 157
>COG1971 Predicted membrane protein [Function unknown]
Probab=22.98 E-value=89 Score=25.50 Aligned_cols=44 Identities=18% Similarity=0.351 Sum_probs=29.6
Q ss_pred chhhhhchHHHHHHHHHHHHhCCCCchhhHHHH-HHHHHHHHHhh
Q 023321 211 FVALFKPLGTAIAVFMAVMFLGETPHLGSLIGT-VVIAFGFYAVI 254 (284)
Q Consensus 211 ~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~-~li~~g~~l~~ 254 (284)
..+.+..+.|.++...+.++=+-.-...+|+|. .+.+.|+.+..
T Consensus 42 ~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~ 86 (190)
T COG1971 42 IFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMII 86 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667778888888886655333446677765 56678888765
No 158
>PF15345 TMEM51: Transmembrane protein 51
Probab=22.34 E-value=65 Score=27.09 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q 023321 241 IGTVVIAFGFYAVIWAQGKESN 262 (284)
Q Consensus 241 ~G~~li~~g~~l~~~~~~~~~~ 262 (284)
.|+++.++++++..+.|+|+++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3677778888888776665443
No 159
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=22.11 E-value=59 Score=26.43 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCchhhHHHHHHHH--HHHHHhhccc
Q 023321 225 FMAVMFLGETPHLGSLIGTVVIA--FGFYAVIWAQ 257 (284)
Q Consensus 225 i~~~~~~gE~~~~~~~~G~~li~--~g~~l~~~~~ 257 (284)
-+|..++.|-.-+-+..|..+.+ .|.+...+++
T Consensus 133 ~iG~~Lyt~Y~l~fe~~s~lLLvAmIGAIvLa~~~ 167 (186)
T MTH00057 133 VLGRVLYTDYYYLFILASFILLVAMIGAIVLTHDL 167 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34667777777777788876654 5666665443
No 160
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=21.96 E-value=1.4e+02 Score=22.50 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=14.7
Q ss_pred HHHhCCCCchhh--HHH--HHHHHHHHHHhh
Q 023321 228 VMFLGETPHLGS--LIG--TVVIAFGFYAVI 254 (284)
Q Consensus 228 ~~~~gE~~~~~~--~~G--~~li~~g~~l~~ 254 (284)
|+|--|..+++. +++ ++++++|++++.
T Consensus 25 W~fR~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 25 WFFRVEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred HheecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 344457777544 333 445556777764
No 161
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.80 E-value=6.2e+02 Score=23.08 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023321 7 GEVGMITLGKAAMSSGMSNFVYVVYYNALGTFILLH---YFIYNTYRSKGPVLTFSLLCKFFMLGVLGICLVQIFAITGI 83 (284)
Q Consensus 7 ~wg~~~~~~k~~~~~~~~p~~~~~~R~~~a~l~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 83 (284)
.|+.+.-+.|.+.+ ++.-..+.-..++++-++... .... .+...+.-.+.+-...+.+-++ .-.+.|.+.
T Consensus 200 gWs~slY~i~ql~~-nLq~Iwieyr~yvLgYvlivgliSfaVC--YK~GPp~d~RS~~ilmWtLqli----~lvl~Yfsv 272 (452)
T KOG3817|consen 200 GWSISLYVIKQLAD-NLQLIWIEYRDYVLGYVLIVGLISFAVC--YKIGPPKDPRSQTILMWTLQLI----GLVLAYFSV 272 (452)
T ss_pred cchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhh--hccCCCCCcchhhHHHHHHHHH----HHHHHHHhc
Confidence 58888888888886 688888777777777443322 2222 1111122222222222333333 346678888
Q ss_pred ccccHhHHHHHhh
Q 023321 84 KYSSPTLASAMGN 96 (284)
Q Consensus 84 ~~~~~~~a~il~~ 96 (284)
++..++.|.+++.
T Consensus 273 q~p~~a~A~iI~~ 285 (452)
T KOG3817|consen 273 QHPSAAIAAIIMV 285 (452)
T ss_pred ccHHHHHHHHHHH
Confidence 8888888766554
No 162
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=21.57 E-value=5.5e+02 Score=22.45 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=18.7
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHH--hhhccccc
Q 023321 86 SSPTLASAMGNLIPGITFLLAVFF--RMEKVAIR 117 (284)
Q Consensus 86 ~~~~~a~il~~~~Pi~~~lla~~~--~~E~~~~~ 117 (284)
.+..+.+.+.....+...+.+.+. +-||..+|
T Consensus 44 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r 77 (405)
T TIGR00891 44 LTTVDAASLISAALISRWFGALMFGLWGDRYGRR 77 (405)
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 355666666666555555555443 34777766
No 163
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=21.31 E-value=7.1e+02 Score=23.63 Aligned_cols=48 Identities=8% Similarity=0.011 Sum_probs=28.4
Q ss_pred HHHHhhhhHHHHHHHHHHH--hhhccc-ccccccchhhHHHHHHhhhhhhh
Q 023321 91 ASAMGNLIPGITFLLAVFF--RMEKVA-IRSRSSQAKILGTVVSIAGAFIV 138 (284)
Q Consensus 91 a~il~~~~Pi~~~lla~~~--~~E~~~-~~~~~~~~~~~g~~l~~~Gv~li 138 (284)
++-.++..|++.++++-++ +-.|.. ++|.||...=.++.+.++|+..+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~ 360 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFC 360 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5678899999999887653 223332 23345555545555555555543
No 164
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=21.25 E-value=84 Score=27.15 Aligned_cols=22 Identities=27% Similarity=0.683 Sum_probs=18.9
Q ss_pred CchhhHHHHHHHHHHHHHhhcc
Q 023321 235 PHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 235 ~~~~~~~G~~li~~g~~l~~~~ 256 (284)
++..|+++..+++.|+++..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999887654
No 165
>PHA02902 putative IMV membrane protein; Provisional
Probab=21.21 E-value=1.5e+02 Score=19.50 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhh-cccccccc
Q 023321 240 LIGTVVIAFGFYAVI-WAQGKESN 262 (284)
Q Consensus 240 ~~G~~li~~g~~l~~-~~~~~~~~ 262 (284)
+.....++.+.+++. +++.|..+
T Consensus 8 i~~v~v~Ivclliya~YrR~kci~ 31 (70)
T PHA02902 8 ILAVIVIIFCLLIYAAYKRYKCIP 31 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455555555543 34443333
No 166
>PF08802 CytB6-F_Fe-S: Cytochrome B6-F complex Fe-S subunit ; InterPro: IPR014909 The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. The cytochrome b6-f complex has 4 large subunits, these are: cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are: PetG, PetL, PetM and PetN. The complex functions as a dimer. This protein corresponds to the alpha helical transmembrane domain of the cytochrome b6-f complex Rieske iron-sulphur subunit. ; GO: 0009496 plastoquinol-plastocyanin reductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process, 0042651 thylakoid membrane; PDB: 1Q90_R 1VF5_D 2E75_D 2E74_D 2E76_D 2D2C_Q 2ZT9_D.
Probab=20.97 E-value=1.8e+02 Score=17.11 Aligned_cols=31 Identities=10% Similarity=0.033 Sum_probs=18.5
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023321 54 PVLTFSLLCKFFMLGVLGICLVQIFAITGIK 84 (284)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~ 84 (284)
|...+|++.-++..|..+......++-+.--
T Consensus 4 Pdm~RR~lmN~ll~Gava~~a~~~lyP~~~f 34 (39)
T PF08802_consen 4 PDMSRRQLMNLLLGGAVAVPAGGMLYPYVKF 34 (39)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHhhHHHHHHHHhhhheeE
Confidence 4556677777788887765555555544433
No 167
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=20.92 E-value=6.8e+02 Score=23.23 Aligned_cols=15 Identities=27% Similarity=0.498 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 023321 240 LIGTVVIAFGFYAVI 254 (284)
Q Consensus 240 ~~G~~li~~g~~l~~ 254 (284)
+.|+++++.+++...
T Consensus 417 ~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 417 LMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHHHHHHh
Confidence 335445554444443
No 168
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=20.88 E-value=5.6e+02 Score=22.22 Aligned_cols=22 Identities=18% Similarity=0.277 Sum_probs=18.5
Q ss_pred CchhhHHHHHHHHHHHHHhhcc
Q 023321 235 PHLGSLIGTVVIAFGFYAVIWA 256 (284)
Q Consensus 235 ~~~~~~~G~~li~~g~~l~~~~ 256 (284)
++..|++...+++.|+++..+.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876543
No 169
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.72 E-value=86 Score=18.56 Aligned_cols=16 Identities=25% Similarity=0.868 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhccc
Q 023321 242 GTVVIAFGFYAVIWAQ 257 (284)
Q Consensus 242 G~~li~~g~~l~~~~~ 257 (284)
|.+++++++++..+++
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4555556666665443
Done!