Query 023321
Match_columns 284
No_of_seqs 152 out of 1794
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 04:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023321.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023321hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 56.0 40 0.0029 25.9 14.2 34 84-117 38-73 (417)
2 d1iwga8 f.35.1.1 (A:513-566,A: 34.5 33 0.0024 25.4 5.6 27 222-248 96-122 (222)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 24.6 1.5E+02 0.011 23.0 16.5 32 86-117 56-89 (447)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 19.9 51 0.0037 23.8 4.1 45 204-248 60-104 (199)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 10.8 93 0.0068 14.5 3.0 19 218-236 10-28 (30)
6 d1q90r_ f.23.12.1 (R:) ISP sub 5.4 2.3E+02 0.017 14.5 3.6 26 54-79 5-30 (39)
7 d2e74g1 f.23.26.1 (G:9-35) Pet 5.4 1.8E+02 0.013 13.2 1.8 20 241-260 3-23 (27)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 4.9 1.5E+02 0.011 18.2 1.6 12 247-258 32-43 (91)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.1 5.3E+02 0.039 18.8 4.7 18 100-117 36-53 (248)
10 d1xmea1 f.24.1.1 (A:14-562) Ba 2.7 3.5E+02 0.025 22.6 2.5 40 240-279 465-504 (549)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=55.97 E-value=40 Score=25.88 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=25.0
Q ss_pred ccccHhHHHHHhhhhHHHHHHHHHHH--hhhccccc
Q 023321 84 KYSSPTLASAMGNLIPGITFLLAVFF--RMEKVAIR 117 (284)
Q Consensus 84 ~~~~~~~a~il~~~~Pi~~~lla~~~--~~E~~~~~ 117 (284)
...+.++.+++.....+...+.+.+. +-||..+|
T Consensus 38 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR 73 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 34678888888888877777776664 45888777
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=34.47 E-value=33 Score=25.39 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHH
Q 023321 222 IAVFMAVMFLGETPHLGSLIGTVVIAF 248 (284)
Q Consensus 222 ~a~i~~~~~~gE~~~~~~~~G~~li~~ 248 (284)
.+.+.+..+.|.+++....+|.++.+.
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhh
Confidence 355667778899999988888776554
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.64 E-value=1.5e+02 Score=22.95 Aligned_cols=32 Identities=9% Similarity=-0.219 Sum_probs=20.0
Q ss_pred ccHhHHHHHhhhhHHHHHHHHHHH--hhhccccc
Q 023321 86 SSPTLASAMGNLIPGITFLLAVFF--RMEKVAIR 117 (284)
Q Consensus 86 ~~~~~a~il~~~~Pi~~~lla~~~--~~E~~~~~ 117 (284)
.+.++.+.+.....+...+...+. +-+|..+|
T Consensus 56 ~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 355666666666666655555543 44888877
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=19.91 E-value=51 Score=23.76 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=30.6
Q ss_pred HhhcCccchhhhhchHHHHHHHHHHHHhCCCCchhhHHHHHHHHH
Q 023321 204 LQKKGPVFVALFKPLGTAIAVFMAVMFLGETPHLGSLIGTVVIAF 248 (284)
Q Consensus 204 l~~~~~~~~~~~~~l~pv~a~i~~~~~~gE~~~~~~~~G~~li~~ 248 (284)
.+.........+.....+........++|.+++.....+..+.+.
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~ig 104 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIG 104 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 355555555556666666666667788899999888777666654
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.82 E-value=93 Score=14.48 Aligned_cols=19 Identities=32% Similarity=0.670 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHhCCCCc
Q 023321 218 LGTAIAVFMAVMFLGETPH 236 (284)
Q Consensus 218 l~pv~a~i~~~~~~gE~~~ 236 (284)
...+.++++=.++++|+|.
T Consensus 10 fac~i~lfffaiffreppr 28 (30)
T d2axtt1 10 FACIIALFFFAIFFREPPR 28 (30)
T ss_dssp HHHHHHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3444555555566777764
No 6
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.40 E-value=2.3e+02 Score=14.46 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=16.1
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHH
Q 023321 54 PVLTFSLLCKFFMLGVLGICLVQIFA 79 (284)
Q Consensus 54 ~~~~~~~~~~~~~~g~~~~~~~~~~~ 79 (284)
|...+|++.-++..|..+......++
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~ 30 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLAL 30 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhcc
Confidence 55566777877888776544443333
No 7
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.39 E-value=1.8e+02 Score=13.16 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=10.1
Q ss_pred HHHHHH-HHHHHHhhcccccc
Q 023321 241 IGTVVI-AFGFYAVIWAQGKE 260 (284)
Q Consensus 241 ~G~~li-~~g~~l~~~~~~~~ 260 (284)
+|.+.+ +.|.+...+++.++
T Consensus 3 lgli~~tl~glf~aayqqykr 23 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQYKR 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred eeehHHHHHHHHHHHHHHhcC
Confidence 454443 45666555554443
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=4.85 E-value=1.5e+02 Score=18.18 Aligned_cols=12 Identities=8% Similarity=-0.371 Sum_probs=4.8
Q ss_pred HHHHHHhhcccc
Q 023321 247 AFGFYAVIWAQG 258 (284)
Q Consensus 247 ~~g~~l~~~~~~ 258 (284)
+.|...+..-|.
T Consensus 32 V~~~~~~~~~ry 43 (91)
T d1fftb2 32 AILMAVGFAWKY 43 (91)
T ss_dssp HHHHHHTTTTTT
T ss_pred HHHHHHhhheee
Confidence 344444433333
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.13 E-value=5.3e+02 Score=18.78 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhccccc
Q 023321 100 GITFLLAVFFRMEKVAIR 117 (284)
Q Consensus 100 i~~~lla~~~~~E~~~~~ 117 (284)
+.+.++.++++.+|.-..
T Consensus 36 ~~~~~~~~vy~s~r~~p~ 53 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAW 53 (248)
T ss_dssp HHHHHHHHHHSSSCCTTH
T ss_pred HHHHheEEEEEccCccce
Confidence 445555566766665555
No 10
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=2.71 E-value=3.5e+02 Score=22.60 Aligned_cols=40 Identities=10% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccccccccccCCCcCCccccccCCC
Q 023321 240 LIGTVVIAFGFYAVIWAQGKESNMTTGNVGSLESLNQKIP 279 (284)
Q Consensus 240 ~~G~~li~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (284)
.+|.++.+.-++...++++|.++.++++-..+++.+..+|
T Consensus 465 ~~g~l~f~~nl~~s~~~~~~~~~~~~~~~~~~~~~~~p~~ 504 (549)
T d1xmea1 465 LVALLLFIYGLFSVLLSRERKPELAEAPLPFAEVISGPED 504 (549)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCHHHHSSCCCCCCBCCCSSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCCCCCccccCCCCCC
Done!