Query 023322
Match_columns 284
No_of_seqs 239 out of 1538
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 04:52:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 91.2 0.099 3.4E-06 33.0 1.9 32 89-120 8-39 (51)
2 2ayj_A 50S ribosomal protein L 86.0 0.32 1.1E-05 31.0 1.6 27 94-120 18-44 (56)
3 3t7l_A Zinc finger FYVE domain 74.9 1.8 6.2E-05 30.5 2.5 25 95-119 20-46 (90)
4 1x4u_A Zinc finger, FYVE domai 74.0 1.4 4.8E-05 30.6 1.7 24 95-118 14-39 (84)
5 1z2q_A LM5-1; membrane protein 73.8 1.4 4.9E-05 30.6 1.7 25 95-119 21-47 (84)
6 2yw8_A RUN and FYVE domain-con 71.7 1.6 5.4E-05 30.2 1.6 25 95-119 19-45 (82)
7 1joc_A EEA1, early endosomal a 69.1 1.7 5.9E-05 32.6 1.4 25 95-119 69-95 (125)
8 1wfk_A Zinc finger, FYVE domai 64.6 2.3 8E-05 29.8 1.2 25 94-118 8-34 (88)
9 2knc_B Integrin beta-3; transm 63.7 24 0.00082 24.0 6.3 42 181-222 11-52 (79)
10 1dvp_A HRS, hepatocyte growth 61.5 2.7 9.4E-05 34.7 1.3 25 96-120 162-188 (220)
11 1vfy_A Phosphatidylinositol-3- 59.6 2.1 7.3E-05 28.8 0.3 24 96-119 12-37 (73)
12 1y02_A CARP2, FYVE-ring finger 57.1 2.6 8.8E-05 31.5 0.3 23 96-118 20-44 (120)
13 3zyq_A Hepatocyte growth facto 54.0 4.3 0.00015 33.7 1.3 24 96-119 165-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 49.6 6.1 0.00021 24.5 1.1 22 96-117 12-33 (53)
15 2c6a_A Ubiquitin-protein ligas 47.0 8 0.00027 23.5 1.3 23 95-117 13-35 (46)
16 1wfl_A Zinc finger protein 216 45.0 22 0.00075 23.9 3.4 37 95-132 25-66 (74)
17 2dkt_A Ring finger and CHY zin 44.8 4.3 0.00015 31.2 -0.1 41 94-134 82-126 (143)
18 3u5e_m 60S ribosomal protein L 44.3 8.9 0.00031 28.5 1.6 25 94-118 92-118 (128)
19 3mpx_A FYVE, rhogef and PH dom 41.3 5.6 0.00019 36.0 0.0 25 95-119 375-401 (434)
20 2dkt_A Ring finger and CHY zin 38.5 4.9 0.00017 30.9 -0.7 31 97-127 103-136 (143)
21 1ffk_W Ribosomal protein L37AE 33.7 14 0.00049 24.8 1.1 28 93-120 25-56 (73)
22 2vrw_B P95VAV, VAV1, proto-onc 30.9 14 0.00046 33.2 0.8 27 94-120 356-385 (406)
23 1twf_L ABC10-alpha, DNA-direct 30.6 26 0.0009 23.3 2.0 27 94-120 27-56 (70)
24 3j20_Y 30S ribosomal protein S 30.2 14 0.00047 22.8 0.5 23 94-116 18-44 (50)
25 3jyw_9 60S ribosomal protein L 29.7 28 0.00094 23.3 1.9 27 94-120 25-55 (72)
26 1tac_A TAT protein; transcript 28.6 19 0.00066 24.8 1.0 13 96-115 25-37 (86)
27 2pg3_A Queuosine biosynthesis 28.5 12 0.00042 30.6 0.0 18 105-122 191-208 (232)
28 1wff_A Riken cDNA 2810002D23 p 28.1 92 0.0031 21.5 4.4 37 94-131 24-66 (85)
29 3arc_T Photosystem II reaction 26.6 88 0.003 17.3 4.1 25 47-71 5-30 (32)
30 1h7d_A Aminolevulinic acid syn 24.9 25 0.00086 21.6 1.0 14 120-133 5-18 (49)
31 2xzm_5 Ribosomal protein S26E 24.0 18 0.00062 26.6 0.2 22 108-129 19-40 (119)
32 3gj3_B Nuclear pore complex pr 23.7 33 0.0011 19.1 1.3 21 96-116 8-28 (33)
33 1wil_A KIAA1045 protein; ring 23.0 46 0.0016 23.0 2.1 23 96-118 16-38 (89)
34 3bl5_A Queuosine biosynthesis 22.3 19 0.00066 28.8 0.1 23 97-121 182-204 (219)
35 3u5c_a 40S ribosomal protein S 22.3 19 0.00065 26.5 0.1 21 108-128 19-39 (119)
36 2apo_B Ribosome biogenesis pro 21.9 34 0.0012 22.0 1.2 22 94-117 5-26 (60)
37 2jrp_A Putative cytoplasmic pr 21.3 16 0.00055 25.1 -0.5 21 96-117 19-39 (81)
38 3mi9_C Protein TAT; P-TEFB, HI 21.0 19 0.00065 24.8 -0.2 13 96-115 25-37 (86)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=91.21 E-value=0.099 Score=32.97 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=25.8
Q ss_pred hhcCCccccccccCcccCCCCCCCcccCcccc
Q 023322 89 KRKGGDLRYCQKCSHYKPPRAHHCRVCKRCVL 120 (284)
Q Consensus 89 ~~~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 120 (284)
++.......|..|....|+++..|+.||.--+
T Consensus 8 e~r~~~k~iCpkC~a~~~~gaw~CrKCG~~~l 39 (51)
T 3j21_g 8 EARIFKKYVCLRCGATNPWGAKKCRKCGYKRL 39 (51)
T ss_dssp HHHSSSEEECTTTCCEECTTCSSCSSSSSCCC
T ss_pred HHHHhCCccCCCCCCcCCCCceecCCCCCccc
Confidence 33334668999999999999999999987544
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=86.04 E-value=0.32 Score=31.05 Aligned_cols=27 Identities=37% Similarity=0.783 Sum_probs=23.3
Q ss_pred ccccccccCcccCCCCCCCcccCcccc
Q 023322 94 DLRYCQKCSHYKPPRAHHCRVCKRCVL 120 (284)
Q Consensus 94 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~ 120 (284)
+...|..|...-|+|+..|+.|+..-+
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~~L 44 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHSTNL 44 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCCCE
T ss_pred chhhhccccCcCCcccccccCCCCCCC
Confidence 558999999999999999999885433
No 3
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=74.89 E-value=1.8 Score=30.50 Aligned_cols=25 Identities=32% Similarity=0.762 Sum_probs=17.8
Q ss_pred cccccccCcc--cCCCCCCCcccCccc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
...|..|... --.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 3668888752 345789999998743
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.98 E-value=1.4 Score=30.61 Aligned_cols=24 Identities=21% Similarity=0.539 Sum_probs=18.1
Q ss_pred cccccccCcc--cCCCCCCCcccCcc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRC 118 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~C 118 (284)
...|..|... --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 3678888763 45788999999874
No 5
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=73.77 E-value=1.4 Score=30.57 Aligned_cols=25 Identities=32% Similarity=0.736 Sum_probs=18.6
Q ss_pred cccccccCcc--cCCCCCCCcccCccc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
...|..|... --.|-|||+.|++-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 4678888863 346889999998743
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=71.66 E-value=1.6 Score=30.18 Aligned_cols=25 Identities=32% Similarity=0.776 Sum_probs=18.4
Q ss_pred cccccccCcc--cCCCCCCCcccCccc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
...|..|... --.|-|||+.||+-+
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCcccCcCCcccCccccccCCCCCCEE
Confidence 4678888853 346889999998744
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=69.13 E-value=1.7 Score=32.64 Aligned_cols=25 Identities=32% Similarity=0.768 Sum_probs=18.6
Q ss_pred cccccccCcc--cCCCCCCCcccCccc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
...|..|... --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 3678888863 346889999999743
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=64.61 E-value=2.3 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=18.6
Q ss_pred ccccccccCcc--cCCCCCCCcccCcc
Q 023322 94 DLRYCQKCSHY--KPPRAHHCRVCKRC 118 (284)
Q Consensus 94 ~~~~C~~C~~~--kP~Rs~HC~~C~~C 118 (284)
+...|..|... --.|-|||+.|++-
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCE
Confidence 34678888863 44688999999874
No 9
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=63.71 E-value=24 Score=24.03 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhHHhhhhh
Q 023322 181 AYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRA 222 (284)
Q Consensus 181 ~~~i~~~~~~~~~~~~~~l~~~h~~li~~n~Tt~E~~~~~~~ 222 (284)
..++.+++...+++.+..|+++-+..-.+.+--++.+++.|.
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~ 52 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERA 52 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544444555556666666666666666666655444
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=61.52 E-value=2.7 Score=34.66 Aligned_cols=25 Identities=36% Similarity=0.830 Sum_probs=18.5
Q ss_pred ccccccCcc--cCCCCCCCcccCcccc
Q 023322 96 RYCQKCSHY--KPPRAHHCRVCKRCVL 120 (284)
Q Consensus 96 ~~C~~C~~~--kP~Rs~HC~~C~~CV~ 120 (284)
..|..|... --.|-|||+.||+.+-
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C 188 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFC 188 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccCCCCCccCCcccccccCCcCCEEC
Confidence 678888753 3468899999987543
No 11
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=59.64 E-value=2.1 Score=28.79 Aligned_cols=24 Identities=38% Similarity=0.747 Sum_probs=17.4
Q ss_pred ccccccCcc--cCCCCCCCcccCccc
Q 023322 96 RYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 96 ~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
..|..|... .-.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 357778753 346889999999743
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=57.08 E-value=2.6 Score=31.50 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=17.5
Q ss_pred ccccccCcc--cCCCCCCCcccCcc
Q 023322 96 RYCQKCSHY--KPPRAHHCRVCKRC 118 (284)
Q Consensus 96 ~~C~~C~~~--kP~Rs~HC~~C~~C 118 (284)
..|..|... -..|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 568888752 34688999999974
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=54.02 E-value=4.3 Score=33.68 Aligned_cols=24 Identities=33% Similarity=0.836 Sum_probs=17.3
Q ss_pred ccccccCcc--cCCCCCCCcccCccc
Q 023322 96 RYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 96 ~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
..|..|... ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 578888742 334789999998754
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=49.61 E-value=6.1 Score=24.51 Aligned_cols=22 Identities=23% Similarity=0.712 Sum_probs=16.3
Q ss_pred ccccccCcccCCCCCCCcccCc
Q 023322 96 RYCQKCSHYKPPRAHHCRVCKR 117 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C~~ 117 (284)
-.|.+|+..-||-..||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 5688888888887777776643
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.04 E-value=8 Score=23.47 Aligned_cols=23 Identities=30% Similarity=0.835 Sum_probs=18.1
Q ss_pred cccccccCcccCCCCCCCcccCc
Q 023322 95 LRYCQKCSHYKPPRAHHCRVCKR 117 (284)
Q Consensus 95 ~~~C~~C~~~kP~Rs~HC~~C~~ 117 (284)
.-.|.+|+..-||-..||..|-.
T Consensus 13 ~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 13 YWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp CEECTTTCCEECSSCSSCTTTCC
T ss_pred eEecccccccCCCccchhhHHHh
Confidence 35699999998888888877743
No 16
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.96 E-value=22 Score=23.92 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=22.5
Q ss_pred cccccccCcccCCCCCCCcccCc--cc---cCCcccCcccccc
Q 023322 95 LRYCQKCSHYKPPRAHHCRVCKR--CV---LRMDHHCIWISNC 132 (284)
Q Consensus 95 ~~~C~~C~~~kP~Rs~HC~~C~~--CV---~~~DHHC~wi~nC 132 (284)
...|..|+..--.=...|+ |+. |- .--||.|++--.=
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~ 66 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKA 66 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhh
Confidence 4679999875322247787 764 32 2238999875433
No 17
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=44.84 E-value=4.3 Score=31.17 Aligned_cols=41 Identities=24% Similarity=0.661 Sum_probs=26.0
Q ss_pred ccccccccCcccCCC-CCCCcccCccccC---CcccCcccccccC
Q 023322 94 DLRYCQKCSHYKPPR-AHHCRVCKRCVLR---MDHHCIWISNCVG 134 (284)
Q Consensus 94 ~~~~C~~C~~~kP~R-s~HC~~C~~CV~~---~DHHC~wi~nCIG 134 (284)
...||.+|+.+.+++ ..||..||-|... -=-||.--|.|+.
T Consensus 82 ~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 82 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp CSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred eeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 457899999885543 5677777777764 2235555555543
No 18
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=44.34 E-value=8.9 Score=28.53 Aligned_cols=25 Identities=44% Similarity=0.941 Sum_probs=21.8
Q ss_pred ccccccccCcccCCCCCCCc--ccCcc
Q 023322 94 DLRYCQKCSHYKPPRAHHCR--VCKRC 118 (284)
Q Consensus 94 ~~~~C~~C~~~kP~Rs~HC~--~C~~C 118 (284)
....|.+|...-|+|+..|+ .|+..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 45899999999999999999 48764
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=41.32 E-value=5.6 Score=36.02 Aligned_cols=25 Identities=32% Similarity=0.778 Sum_probs=0.0
Q ss_pred cccccccCcc--cCCCCCCCcccCccc
Q 023322 95 LRYCQKCSHY--KPPRAHHCRVCKRCV 119 (284)
Q Consensus 95 ~~~C~~C~~~--kP~Rs~HC~~C~~CV 119 (284)
...|..|... --.|-|||+.||+.+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~ 401 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIV 401 (434)
T ss_dssp ---------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEe
Confidence 4678888752 334789999999743
No 20
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=38.49 E-value=4.9 Score=30.89 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=21.6
Q ss_pred cccccCcccCCCCCCCcccCcccc--CCc-ccCc
Q 023322 97 YCQKCSHYKPPRAHHCRVCKRCVL--RMD-HHCI 127 (284)
Q Consensus 97 ~C~~C~~~kP~Rs~HC~~C~~CV~--~~D-HHC~ 127 (284)
.|..|++=+..--.||..||.|+. -.| |.|.
T Consensus 103 ~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 455555555677899999999954 344 7764
No 21
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=33.66 E-value=14 Score=24.81 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=21.9
Q ss_pred CccccccccCcccCCCC----CCCcccCcccc
Q 023322 93 GDLRYCQKCSHYKPPRA----HHCRVCKRCVL 120 (284)
Q Consensus 93 ~~~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 120 (284)
.....|+.|...+-.|. ++|+.|++-+.
T Consensus 25 ~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 56 (73)
T 1ffk_W 25 KKKYKCPVCGFPKLKRASTSIWVCGHCGYKIA 56 (73)
T ss_pred ccCccCCCCCCceeEEEEeEEEECCCCCcEEE
Confidence 35688999998766665 88999998655
No 22
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=30.88 E-value=14 Score=33.18 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=19.9
Q ss_pred ccccccccCccc---CCCCCCCcccCcccc
Q 023322 94 DLRYCQKCSHYK---PPRAHHCRVCKRCVL 120 (284)
Q Consensus 94 ~~~~C~~C~~~k---P~Rs~HC~~C~~CV~ 120 (284)
...+|..|...- -.|-|||+.|+..|-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h 385 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAH 385 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEEC
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccc
Confidence 568999998643 458899998875443
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.59 E-value=26 Score=23.26 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=19.7
Q ss_pred ccccccccCcc---cCCCCCCCcccCcccc
Q 023322 94 DLRYCQKCSHY---KPPRAHHCRVCKRCVL 120 (284)
Q Consensus 94 ~~~~C~~C~~~---kP~Rs~HC~~C~~CV~ 120 (284)
....|..|... ++.-+-||+.|+.-|+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~RIL 56 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHRIL 56 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCceEe
Confidence 34679999875 5555788999987655
No 24
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.18 E-value=14 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.713 Sum_probs=13.6
Q ss_pred ccccccccCc--c-cC-CCCCCCcccC
Q 023322 94 DLRYCQKCSH--Y-KP-PRAHHCRVCK 116 (284)
Q Consensus 94 ~~~~C~~C~~--~-kP-~Rs~HC~~C~ 116 (284)
..++|+.|.. . .+ ...++|..|+
T Consensus 18 ~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 18 KNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred ecccCCCCCCceEEecCCCeEECCCCC
Confidence 4589999975 2 11 1245666665
No 25
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=29.73 E-value=28 Score=23.33 Aligned_cols=27 Identities=26% Similarity=0.543 Sum_probs=20.7
Q ss_pred ccccccccCcccCCCC----CCCcccCcccc
Q 023322 94 DLRYCQKCSHYKPPRA----HHCRVCKRCVL 120 (284)
Q Consensus 94 ~~~~C~~C~~~kP~Rs----~HC~~C~~CV~ 120 (284)
....|+.|...+-.|. +||+.|++=+.
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~A 55 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVA 55 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEe
Confidence 4578999987776663 69999988654
No 26
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=28.61 E-value=19 Score=24.76 Aligned_cols=13 Identities=31% Similarity=0.365 Sum_probs=8.9
Q ss_pred ccccccCcccCCCCCCCccc
Q 023322 96 RYCQKCSHYKPPRAHHCRVC 115 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C 115 (284)
-||.+| +.||.+|
T Consensus 25 CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 25 AHAKKS-------AYHSQVA 37 (86)
T ss_dssp SSTTTT-------TTTCCCS
T ss_pred ceecch-------hhhhhHH
Confidence 566666 6777766
No 27
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=28.48 E-value=12 Score=30.58 Aligned_cols=18 Identities=28% Similarity=0.663 Sum_probs=14.1
Q ss_pred cCCCCCCCcccCccccCC
Q 023322 105 KPPRAHHCRVCKRCVLRM 122 (284)
Q Consensus 105 kP~Rs~HC~~C~~CV~~~ 122 (284)
.+.|.+||..|+.|++|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455668999999998763
No 28
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=28.09 E-value=92 Score=21.47 Aligned_cols=37 Identities=22% Similarity=0.553 Sum_probs=24.4
Q ss_pred ccccccccCcccCC-CCCCCcccCc--cccC---CcccCccccc
Q 023322 94 DLRYCQKCSHYKPP-RAHHCRVCKR--CVLR---MDHHCIWISN 131 (284)
Q Consensus 94 ~~~~C~~C~~~kP~-Rs~HC~~C~~--CV~~---~DHHC~wi~n 131 (284)
....|..|+..-.. -..+|+ |+. |-.- -||.|++--.
T Consensus 24 ~~~rC~~C~kkvgl~~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyK 66 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFECR-CGNNFCASHRYAEAHGCNYDYK 66 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEECT-TCCEECTTTCSTGGGTCCSCCS
T ss_pred cCccchhhCCeecccCCeEcC-CCCEecccCCCccCCCCcchhh
Confidence 34789999876555 467786 763 4433 4899987543
No 29
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=26.56 E-value=88 Score=17.30 Aligned_cols=25 Identities=12% Similarity=0.350 Sum_probs=13.8
Q ss_pred HHHHHHHHH-HHHHhHHhhcCCCCCC
Q 023322 47 VFTAVALMC-VFSYTVAILRDPGRVP 71 (284)
Q Consensus 47 ~~~~l~~~~-~~~~~~~~~~dPG~~p 71 (284)
.|+++.++. ...++...++||-.++
T Consensus 5 vYt~ll~~tlgiiFFAI~FRePPri~ 30 (32)
T 3arc_T 5 TYVFIFACIIALFFFAIFFREPPRIT 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHHHHHHhhhhcCCCCCC
Confidence 344444333 2335566789996665
No 30
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=24.91 E-value=25 Score=21.62 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=10.9
Q ss_pred cCCcccCccccccc
Q 023322 120 LRMDHHCIWISNCV 133 (284)
Q Consensus 120 ~~~DHHC~wi~nCI 133 (284)
..++|+||+++.+=
T Consensus 5 a~~l~~CPFL~R~p 18 (49)
T 1h7d_A 5 AMLLRSCPVLSQGP 18 (49)
T ss_dssp SCSCCSCCCCSSCS
T ss_pred hhhhccCCchhcCC
Confidence 35789999998763
No 31
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=24.01 E-value=18 Score=26.61 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.7
Q ss_pred CCCCCcccCccccCCcccCccc
Q 023322 108 RAHHCRVCKRCVLRMDHHCIWI 129 (284)
Q Consensus 108 Rs~HC~~C~~CV~~~DHHC~wi 129 (284)
+.-||..|++||.+----+.++
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf~ 40 (119)
T 2xzm_5 19 RTVPCTNCGRQVAKDKAVKRYT 40 (119)
T ss_dssp CEEECTTTCCEEETTTSEECCE
T ss_pred ccEeeCCccccCcccceeEEEE
Confidence 4557999999999877666543
No 32
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=23.71 E-value=33 Score=19.13 Aligned_cols=21 Identities=29% Similarity=0.719 Sum_probs=13.8
Q ss_pred ccccccCcccCCCCCCCcccC
Q 023322 96 RYCQKCSHYKPPRAHHCRVCK 116 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C~ 116 (284)
--|..|-..-++.+.+|..|+
T Consensus 8 W~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 8 WDCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp EECTTTCCEECTTCSBCTTTC
T ss_pred eeCCcccCCCccccCEEcccC
Confidence 347777776666677776664
No 33
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.02 E-value=46 Score=23.00 Aligned_cols=23 Identities=30% Similarity=0.839 Sum_probs=20.3
Q ss_pred ccccccCcccCCCCCCCcccCcc
Q 023322 96 RYCQKCSHYKPPRAHHCRVCKRC 118 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C~~C 118 (284)
..|..|..+--.--.-|++|+|+
T Consensus 16 ~~C~VC~~~t~~~l~pCRvC~Rv 38 (89)
T 1wil_A 16 EMCDVCEVWTAESLFPCRVCTRV 38 (89)
T ss_dssp CCCTTTCCCCSSCCSSCSSSSSC
T ss_pred cccCccccccccceecccccccc
Confidence 78999999987778889999996
No 34
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=22.34 E-value=19 Score=28.77 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=16.2
Q ss_pred cccccCcccCCCCCCCcccCccccC
Q 023322 97 YCQKCSHYKPPRAHHCRVCKRCVLR 121 (284)
Q Consensus 97 ~C~~C~~~kP~Rs~HC~~C~~CV~~ 121 (284)
.-..|. .+.|..||..|..|+.|
T Consensus 182 ~t~sc~--~~~~~~~CG~C~~C~~r 204 (219)
T 3bl5_A 182 NTLTCY--NGIIADGCGECPACHLR 204 (219)
T ss_dssp HCCCST--TSCCSSCCSCSHHHHHH
T ss_pred heeecc--CCCCCCCCCCCHHHHHH
Confidence 344553 45566999999999875
No 35
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=22.34 E-value=19 Score=26.54 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=15.6
Q ss_pred CCCCCcccCccccCCcccCcc
Q 023322 108 RAHHCRVCKRCVLRMDHHCIW 128 (284)
Q Consensus 108 Rs~HC~~C~~CV~~~DHHC~w 128 (284)
+.-||..|++||.+----+.+
T Consensus 19 ~~V~C~nCgr~vPKDKAIKrf 39 (119)
T 3u5c_a 19 KPVRCVNCSKSIPKDKAIKRM 39 (119)
T ss_dssp CEEECTTTCCEEEGGGSCEEE
T ss_pred ccEeeccccccccccceeeEE
Confidence 355799999999986655544
No 36
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.93 E-value=34 Score=22.01 Aligned_cols=22 Identities=27% Similarity=0.768 Sum_probs=16.9
Q ss_pred ccccccccCcccCCCCCCCcccCc
Q 023322 94 DLRYCQKCSHYKPPRAHHCRVCKR 117 (284)
Q Consensus 94 ~~~~C~~C~~~kP~Rs~HC~~C~~ 117 (284)
..+.|..|..+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4578999988776 677888875
No 37
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.27 E-value=16 Score=25.10 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=12.6
Q ss_pred ccccccCcccCCCCCCCcccCc
Q 023322 96 RYCQKCSHYKPPRAHHCRVCKR 117 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C~~ 117 (284)
..|..|+..-++.+ .|..|++
T Consensus 19 ~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 19 AHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EECTTTCCEEEEEE-ECSSSCS
T ss_pred eECccccccCCCcc-cCcchhh
Confidence 44666666655555 6666654
No 38
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=21.03 E-value=19 Score=24.81 Aligned_cols=13 Identities=62% Similarity=1.730 Sum_probs=7.7
Q ss_pred ccccccCcccCCCCCCCccc
Q 023322 96 RYCQKCSHYKPPRAHHCRVC 115 (284)
Q Consensus 96 ~~C~~C~~~kP~Rs~HC~~C 115 (284)
-||.+| +.||-+|
T Consensus 25 CYCKkC-------cyHCq~C 37 (86)
T 3mi9_C 25 CYCKKC-------CFHCQVC 37 (86)
T ss_dssp CCSTTG-------GGSSHHH
T ss_pred ccccch-------hhhhhhh
Confidence 566666 5666544
Done!