BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023323
         (284 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A0CCD2|PPX4_PARTE Serine/threonine-protein phosphatase PP-X homolog 4 OS=Paramecium
           tetraurelia GN=Ppx4 PE=3 SV=1
          Length = 306

 Score = 31.6 bits (70), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 6   RGKRMMFVGD---SLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDY 54
           RG   +F GD     NR   I ++C  H+LV E  + M     +TV++A +Y
Sbjct: 210 RGAGYLFGGDVVDDFNRKNNIELICRAHQLVMEGYRVMFNEQLVTVWSAPNY 261


>sp|A0C1E4|PPX3_PARTE Serine/threonine-protein phosphatase PP-X homolog 3 OS=Paramecium
           tetraurelia GN=Ppx3 PE=3 SV=1
          Length = 305

 Score = 31.6 bits (70), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 6   RGKRMMFVGD---SLNRGQYISMVCLLHRLVPENAKSMETFDSLTVFTAKDY 54
           RG   +F GD     NR   I ++C  H+LV E  + M     +TV++A +Y
Sbjct: 210 RGAGYLFGGDVVDDFNRKNNIELICRAHQLVMEGYRVMFNEQLVTVWSAPNY 261


>sp|Q9FX25|ARFM_ARATH Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3
          Length = 621

 Score = 31.6 bits (70), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%)

Query: 206 MQVIGEVFGNSKFPITFLNITQLSSYRKDAHTSIYKKQWNPLSPEQVANPVSYADCTH 263
           MQ  G+ F   ++  T + +  +S + KD+     K QW+ LSP    N VS  D  H
Sbjct: 296 MQFEGKDFSEKRYDGTIIGVNDMSPHWKDSEWRSLKVQWDELSPFLRPNQVSPWDIEH 353


>sp|P31226|SAX_LITCT Saxiphilin OS=Lithobates catesbeiana PE=1 SV=3
          Length = 844

 Score = 31.2 bits (69), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 26/135 (19%)

Query: 141 MVMKSMLRW---VKLNMDPKKTRVFFTSMSPTHAKS---IEWGGEPGKNCYNETTPIEDP 194
           +V K +L W    K ++    ++ F  S  P   ++    +  GE GKNC N      D 
Sbjct: 294 LVEKKLLSWDGPAKESIQRAMSKFFSVSCIPGATQTNLCKQCKGEEGKNCKNS----HDE 349

Query: 195 NYWGSDCDKRIMQVIGEVFGNSKFPITFLNITQLSSYRKDAHTSIYKKQWNPLSPEQVAN 254
            Y+G   +    + + E  G+    + FL  T LS    D H+ +Y+     L P+    
Sbjct: 350 PYYG---NYGAFRCLKEDMGD----VAFLRSTALS----DEHSEVYEL----LCPDNTRK 394

Query: 255 PVS-YADCTHWCLPG 268
           P++ Y +C    +P 
Sbjct: 395 PLNKYKECNLGTVPA 409


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.135    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,367,224
Number of Sequences: 539616
Number of extensions: 4458384
Number of successful extensions: 8718
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8714
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)