BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023324
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 162/278 (58%), Positives = 202/278 (72%), Gaps = 4/278 (1%)
Query: 7 EISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIA 66
+ISS+K FGG K F+H S L C M F +Y K P LYWLSGLTCT++NFI+
Sbjct: 5 QISSNKCFGGLQKVFEHDSVELNCKMKFAVYLPPKAETG-KCPALYWLSGLTCTEQNFIS 63
Query: 67 KSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDY 125
KSG ++AS G+ +IAPDTSPRG N++GE +SWDFG GAGFY++AT++ WK N+RMY Y
Sbjct: 64 KSGYHQSASEHGLVVIAPDTSPRGCNIKGEDESWDFGTGAGFYVDATEDPWKTNYRMYSY 123
Query: 126 VVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCP 185
V +ELP+L++ NFP ++ R SIFGHSMGGHGAL LKN KYKSVSAFAPICNPV CP
Sbjct: 124 VTEELPQLINANFP-VDPQRMSIFGHSMGGHGALICALKNPGKYKSVSAFAPICNPVLCP 182
Query: 186 WGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPD-QLFPNKFEEA 244
WG+KAF+ YLG++++ W+ YDAT LV ILIDQG+DD+FL D QL P+ F A
Sbjct: 183 WGKKAFSGYLGTDQSKWKAYDATHLVKSYPGSQLDILIDQGKDDQFLLDGQLLPDNFIAA 242
Query: 245 CRSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 282
C + ++ R Q YDHSY+FIATFI DHI HHA+ L
Sbjct: 243 CTEKKIPVVFRLQEDYDHSYYFIATFITDHIRHHAKYL 280
>pdb|3S8Y|A Chain A, Bromide Soaked Structure Of An Esterase From The
Oil-Degrading Bacterium Oleispira Antarctica
Length = 280
Score = 309 bits (791), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 154/278 (55%), Positives = 195/278 (70%), Gaps = 9/278 (3%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
+SS+K FGG++K++ H S TL C+M F IY K PVLYWLSGLTC+DENF+ K
Sbjct: 7 LSSNKSFGGWHKQYSHVSNTLNCAMRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFMQK 66
Query: 68 SGAQRAASAEGVALIAPDTSPRGLNVEGEAD--SWDFGVGAGFYLNATQEKW-KNWRMYD 124
+GAQR A+ G+A++APDTSPRG EG AD +D G GAGFY+NATQ W ++++MYD
Sbjct: 67 AGAQRLAAELGIAIVAPDTSPRG---EGVADDEGYDLGQGAGFYVNATQAPWNRHYQMYD 123
Query: 125 YVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNC 184
YVV ELP+L+ FP + + +I GHSMGGHGALTI L+N ++Y+SVSAF+PI NPVNC
Sbjct: 124 YVVNELPELIESMFPV--SDKRAIAGHSMGGHGALTIALRNPERYQSVSAFSPINNPVNC 181
Query: 185 PWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEA 244
PWGQKAFT YLG + W EYDA+ L+ K L+DQG+ D FL +QL P E A
Sbjct: 182 PWGQKAFTAYLGKDTDTWREYDASLLMRAAKQY-VPALVDQGEADNFLAEQLKPEVLEAA 240
Query: 245 CRSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 282
S N L LR GYDHSY+FIA+FI+DH+ H+ L
Sbjct: 241 ASSNNYPLELRSHEGYDHSYYFIASFIEDHLRFHSNYL 278
>pdb|3I6Y|A Chain A, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
pdb|3I6Y|B Chain B, Structure Of An Esterase From The Oil-Degrading Bacterium
Oleispira Antarctica
Length = 280
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 151/278 (54%), Positives = 191/278 (68%), Gaps = 9/278 (3%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
+SS+K FGG++K++ H S TL C+ F IY K PVLYWLSGLTC+DENF K
Sbjct: 7 LSSNKSFGGWHKQYSHVSNTLNCAXRFAIYLPPQASTGAKVPVLYWLSGLTCSDENFXQK 66
Query: 68 SGAQRAASAEGVALIAPDTSPRGLNVEGEAD--SWDFGVGAGFYLNATQEKW-KNWRMYD 124
+GAQR A+ G+A++APDTSPRG EG AD +D G GAGFY+NATQ W ++++ YD
Sbjct: 67 AGAQRLAAELGIAIVAPDTSPRG---EGVADDEGYDLGQGAGFYVNATQAPWNRHYQXYD 123
Query: 125 YVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNC 184
YVV ELP+L+ FP + + +I GHS GGHGALTI L+N ++Y+SVSAF+PI NPVNC
Sbjct: 124 YVVNELPELIESXFPV--SDKRAIAGHSXGGHGALTIALRNPERYQSVSAFSPINNPVNC 181
Query: 185 PWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEA 244
PWGQKAFT YLG + W EYDA SL+ + L+DQG+ D FL +QL P E A
Sbjct: 182 PWGQKAFTAYLGKDTDTWREYDA-SLLXRAAKQYVPALVDQGEADNFLAEQLKPEVLEAA 240
Query: 245 CRSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 282
S N L LR GYDHSY+FIA+FI+DH+ H+ L
Sbjct: 241 ASSNNYPLELRSHEGYDHSYYFIASFIEDHLRFHSNYL 278
>pdb|3LS2|A Chain A, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|B Chain B, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|C Chain C, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
pdb|3LS2|D Chain D, Crystal Structure Of An S-Formylglutathione Hydrolase From
Pseudoalteromonas Haloplanktis Tac125
Length = 280
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 142/277 (51%), Positives = 186/277 (67%), Gaps = 5/277 (1%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
ISS K+ GG++K++ H + + C+M F ++ K PVLYWLSGLTCTDENF+ K
Sbjct: 5 ISSVKVSGGWHKQYTHSAVSTHCTMRFAVFLPPGASESNKVPVLYWLSGLTCTDENFMQK 64
Query: 68 SGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYV 126
+GA + A+ G+A++APDTSPRG NV E DS+DF GAGFY+NATQ + ++ MYDYV
Sbjct: 65 AGAFKKAAELGIAIVAPDTSPRGDNVPNE-DSYDFAQGAGFYVNATQAPYNTHFNMYDYV 123
Query: 127 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 186
V ELP L+ ++FP TS +I GHSMGGHGAL I LKN Y S SAF+PI NP+NCPW
Sbjct: 124 VNELPALIEQHFP--VTSTKAISGHSMGGHGALMIALKNPQDYVSASAFSPIVNPINCPW 181
Query: 187 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVS-ATILIDQGQDDKFLPDQLFPNKFEEAC 245
G KAFT YLG++K W +YD+ L++K + + +L+ QG D FL +QL P
Sbjct: 182 GVKAFTGYLGADKTTWAQYDSCKLMAKAEQSNYLPMLVSQGDADNFLDEQLKPQNLVAVA 241
Query: 246 RSANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 282
+ + L L Q GYDHSYFFI++FID H+ H Q L
Sbjct: 242 KQKDYPLTLEMQTGYDHSYFFISSFIDQHLVFHHQYL 278
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/277 (49%), Positives = 188/277 (67%), Gaps = 6/277 (2%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
I ++FGG + + H + TL C M F +Y V+YWLSGLTCT++NFI K
Sbjct: 12 IEQHQIFGGSQQVWAHHAQTLQCEMKFAVYLPNNPENR-PLGVIYWLSGLTCTEQNFITK 70
Query: 68 SGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWK-NWRMYDYV 126
SG QR A+ V ++APDTSPRG V + D++D G AGFYLNAT++ W N++MYDY+
Sbjct: 71 SGFQRYAAEHQVIVVAPDTSPRGEQVPND-DAYDLGQSAGFYLNATEQPWAANYQMYDYI 129
Query: 127 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 186
+ ELP+L+ ++FP + SI GHSMGGHGAL + L+N ++Y+SVSAF+PI +P PW
Sbjct: 130 LNELPRLIEKHFP--TNGKRSIMGHSMGGHGALVLALRNQERYQSVSAFSPILSPSLVPW 187
Query: 187 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACR 246
G+KAFT YLG ++ W++YDA SL+ + V + IDQG +D+FLP QL F E CR
Sbjct: 188 GEKAFTAYLGKDREKWQQYDANSLIQQGYKVQG-MRIDQGLEDEFLPTQLRTEDFIETCR 246
Query: 247 SANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQALR 283
+AN + +RF GYDHSY+FIA+FI +HI +HA L+
Sbjct: 247 AANQPVDVRFHKGYDHSYYFIASFIGEHIAYHAAFLK 283
>pdb|3E4D|A Chain A, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|B Chain B, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|C Chain C, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|E Chain E, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|D Chain D, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
pdb|3E4D|F Chain F, Structural And Kinetic Study Of An S-Formylglutathione
Hydrolase From Agrobacterium Tumefaciens
Length = 278
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/276 (46%), Positives = 167/276 (60%), Gaps = 4/276 (1%)
Query: 8 ISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAK 67
IS + FGG F H S TL F +Y PV+++LSGLTCT N K
Sbjct: 5 ISQNTAFGGXQGVFSHQSETLKSEXTFAVYVPPKAIHE-PCPVVWYLSGLTCTHANVXEK 63
Query: 68 SGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKW-KNWRMYDYV 126
+R AS G+ ++ PDTSPRG +V E +W G GAGFYL+AT+E W ++++ Y YV
Sbjct: 64 GEYRRXASELGLVVVCPDTSPRGNDVPDELTNWQXGKGAGFYLDATEEPWSEHYQXYSYV 123
Query: 127 VKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPVNCPW 186
+ELP L+ ++F + + SR SIFGHS GGHGA TI LKN +++KS SAFAPI P + W
Sbjct: 124 TEELPALIGQHF-RADXSRQSIFGHSXGGHGAXTIALKNPERFKSCSAFAPIVAPSSADW 182
Query: 187 GQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQGQDDKFLPDQLFPNKFEEACR 246
+ A YLG+++A W YDA SLV LIDQG+ D FL L P FEEA +
Sbjct: 183 SEPALEKYLGADRAAWRRYDACSLVEDGARF-PEFLIDQGKADSFLEKGLRPWLFEEAIK 241
Query: 247 SANVALLLRFQPGYDHSYFFIATFIDDHIHHHAQAL 282
++ L LR YDHSY+FI+TF DDH+ HA+ L
Sbjct: 242 GTDIGLTLRXHDRYDHSYYFISTFXDDHLKWHAERL 277
>pdb|1PV1|A Chain A, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|B Chain B, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|C Chain C, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
pdb|1PV1|D Chain D, Crystal Structure Analysis Of Yeast Hypothetical Protein:
Yjg8_yeast
Length = 299
Score = 210 bits (534), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 123/288 (42%), Positives = 167/288 (57%), Gaps = 18/288 (6%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLTCT +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAF 70
Query: 70 AQRAASAEGVALIAPDTSPRGLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 127
Q A G A++ PDTSPRG V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 128 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 179
KELP+ L +F + + +I GHSMGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 180 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVS-ATILIDQGQDDKFLPDQLFP 238
NP N PWGQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 239 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 284
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|4FOL|A Chain A, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|B Chain B, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|C Chain C, S-Formylglutathione Hydrolase Variant H160i
pdb|4FOL|D Chain D, S-Formylglutathione Hydrolase Variant H160i
Length = 299
Score = 206 bits (523), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 166/288 (57%), Gaps = 18/288 (6%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLTCT +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTCTPDNASEKAF 70
Query: 70 AQRAASAEGVALIAPDTSPRGLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 127
Q A G A++ PDTSPRG V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 128 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 179
KELP+ L +F + + +I G SMGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGISMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 180 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVS-ATILIDQGQDDKFLPDQLFP 238
NP N PWGQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPWGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 239 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 284
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|3C6B|A Chain A, Reaction Product Of Paraoxon And S-Formylglutathione
Hydrolase W197i Mutant
pdb|4FLM|A Chain A, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
pdb|4FLM|B Chain B, S-Formylglutathione Hydrolase W197i Variant Containing
Copper
Length = 299
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 164/288 (56%), Gaps = 18/288 (6%)
Query: 15 GGYNKRFKHFSTTLGCSMNFHIY-----FXXXXXXXYKFPVLYWLSGLTCTDENFIAKSG 69
GG + H S + SMN +IY + + P +++LSGLT T +N K+
Sbjct: 11 GGRLIKLSHNSNSTKTSMNVNIYLPKHYYAQDFPRNKRIPTVFYLSGLTXTPDNASEKAF 70
Query: 70 AQRAASAEGVALIAPDTSPRGLNVEGEAD-SWDFGVGAGFYLNATQEKW-KNWRMYDYVV 127
Q A G A++ PDTSPRG V + + SWDFG GAGFYLNATQE + ++++MYDY+
Sbjct: 71 WQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFYLNATQEPYAQHYQMYDYIH 130
Query: 128 KELPKLLSENFPQLETSR------ASIFGHSMGGHGALTIYLKNLD--KYKSVSAFAPIC 179
KELP+ L +F + + +I GH MGG+GA+ YLK +YKS SAFAPI
Sbjct: 131 KELPQTLDSHFNKNGDVKLDFLDNVAITGHXMGGYGAICGYLKGYSGKRYKSCSAFAPIV 190
Query: 180 NPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVS-ATILIDQGQDDKFLPDQLFP 238
NP N P GQKAF YLG KA WE YD L+ ++V ILI G D FL + L P
Sbjct: 191 NPSNVPIGQKAFKGYLGEEKAQWEAYDPCLLIKNIRHVGDDRILIHVGDSDPFLEEHLKP 250
Query: 239 NKFEEACRSANVALLLRFQP--GYDHSYFFIATFIDDHIHHHAQALRL 284
EA ++ + + + G+DHSY+F++TF+ +H HA+ L L
Sbjct: 251 ELLLEAVKATSWQDYVEIKKVHGFDHSYYFVSTFVPEHAEFHARNLGL 298
>pdb|2UZ0|A Chain A, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|B Chain B, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|C Chain C, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
pdb|2UZ0|D Chain D, The Crystal Crystal Structure Of The Esta Protein, A
Virulence Factor Esta Protein From Streptococcus
Pneumonia
Length = 263
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 54/131 (41%), Gaps = 25/131 (19%)
Query: 48 FPVLYWLSGLTCTDENFIAKSGAQRAASAEGVALIAPDTSPRGLNVEGEADSWDFGVGAG 107
PVLY L G + +++ ++ +R + ++ P+TS + W G
Sbjct: 41 IPVLYLLHGXSGNHNSWLKRTNVERLLRGTNLIVVXPNTS----------NGWYTDTQYG 90
Query: 108 FYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIF--GHSMGGHGALTIYLKN 165
F Y + +ELP++L FP + R F G S GG+G + L
Sbjct: 91 F------------DYYTALAEELPQVLKRFFPNXTSKREKTFIAGLSXGGYGCFKLALTT 138
Query: 166 LDKYKSVSAFA 176
+++ ++F+
Sbjct: 139 -NRFSHAASFS 148
>pdb|2QM0|A Chain A, Crystal Structure Of Bes Protein From Bacillus Cereus
pdb|2QM0|B Chain B, Crystal Structure Of Bes Protein From Bacillus Cereus
Length = 275
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 69/181 (38%), Gaps = 10/181 (5%)
Query: 6 TEISSSKMFGGYNKRFKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFI 65
T + ++ +++K +S G HI +PV+Y L G
Sbjct: 6 TTVEKQQIITSNTEQWKXYSKLEGKEYQIHISKPKQPAPDSGYPVIYVLDGNAFFQTFHE 65
Query: 66 AKSGAQRAASAEGV--ALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNW--- 120
A A GV A+I P GE +DF + K W
Sbjct: 66 AVKIQSVRAEKTGVSPAIIVGVGYPIEGAFSGEERCYDFTPSVISKDAPLKPDGKPWPKT 125
Query: 121 ----RMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFA 176
+ ++ +EL + +NF +++ + ++FGH +GG AL I NL+ +++ +
Sbjct: 126 GGAHNFFTFIEEELKPQIEKNF-EIDKGKQTLFGHXLGGLFALHILFTNLNAFQNYFISS 184
Query: 177 P 177
P
Sbjct: 185 P 185
>pdb|1JJF|A Chain A, Structural Basis For The Substrate Specificity Of The
Feruloyl Esterase Domain Of The Cellulosomal Xylanase Z
Of Clostridium Thermocellum
Length = 268
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 29/168 (17%)
Query: 21 FKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS----A 76
+FST + +Y K+ VLY L G+ ++ ++ G + A
Sbjct: 35 ISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIA 94
Query: 77 EG----VALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPK 132
EG + ++ P+T+ G G AD ++ N T+ D + +P
Sbjct: 95 EGKIKPLIIVTPNTNAAG---PGIADGYE---------NFTK---------DLLNSLIPY 133
Query: 133 LLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICN 180
+ S + +I G SMGG + I L NLDK+ + + N
Sbjct: 134 IESNYSVYTDREHRAIAGLSMGGGQSFNIGLTNLDKFAYIGPISAAPN 181
>pdb|1JT2|A Chain A, Structural Basis For The Substrate Specificity Of The
Ferul Domain Of The Cellulosomal Xylanase Z From C.
Thermocellum
Length = 268
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 29/168 (17%)
Query: 21 FKHFSTTLGCSMNFHIYFXXXXXXXYKFPVLYWLSGLTCTDENFIAKSGAQRAAS----A 76
+FST + +Y K+ VLY L G+ ++ ++ G + A
Sbjct: 35 ISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIA 94
Query: 77 EG----VALIAPDTSPRGLNVEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPK 132
EG + ++ P+T+ G G AD ++ N T+ D + +P
Sbjct: 95 EGKIKPLIIVTPNTNAAG---PGIADGYE---------NFTK---------DLLNSLIPY 133
Query: 133 LLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICN 180
+ S + +I G +MGG + I L NLDK+ + + N
Sbjct: 134 IESNYSVYTDREHRAIAGLAMGGGQSFNIGLTNLDKFAYIGPISAAPN 181
>pdb|3VIS|A Chain A, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
pdb|3VIS|B Chain B, Crystal Structure Of Cutinase Est119 From Thermobifida
Alba Ahk119
Length = 306
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 140 QLETSRASIFGHSMGGHGALTIYLKNLD 167
+++ SR ++ GHSMGG G L + + D
Sbjct: 163 RIDASRLAVMGHSMGGGGTLRLASQRPD 190
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 123 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPICNPV 182
Y V EL + + F Q + + ++ GHS+GG AL L + + +S+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQ 174
Query: 183 NCP-WGQKAFTNYLGSN 198
P G AF NY+ S
Sbjct: 175 GQPRVGNPAFANYVVST 191
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 123 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 170
Y V EL + + F Q + + ++ GHS+GG AL L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATAL---LCALDLYQ 159
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 123 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 170
Y V EL + + F Q + + ++ GHS+GG AL L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGATAL---LCALDLYQ 159
>pdb|3DOH|A Chain A, Crystal Structure Of A Thermostable Esterase
pdb|3DOH|B Chain B, Crystal Structure Of A Thermostable Esterase
pdb|3DOI|A Chain A, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
pdb|3DOI|B Chain B, Crystal Structure Of A Thermostable Esterase Complex With
Paraoxon
Length = 380
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 126 VVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAPIC 179
V+K + KLL E ++ +R I G SMGG+G T ++ + + +A PIC
Sbjct: 247 VIKIIRKLLDEY--NIDENRIYITGLSMGGYGTWTAIMEFPELF---AAAIPIC 295
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 123 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYK 170
Y V EL + + F Q + + ++ GHS+GG T+ L LD Y+
Sbjct: 115 YGEVQNELVATVLDQFKQYPSYKVAVTGHSLGGA---TVLLCALDLYQ 159
>pdb|1U2E|A Chain A, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|B Chain B, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|C Chain C, Crystal Structure Of The C-C Bond Hydrolase Mhpc
pdb|1U2E|D Chain D, Crystal Structure Of The C-C Bond Hydrolase Mhpc
Length = 289
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 132 KLLSENFPQLETSRASIFGHSMGGHGALTIYLK 164
++L QL+ ++ + G+SMGGH ++ LK
Sbjct: 95 RILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLK 127
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 154 GGHGALTIYLKNLDKYKSVSAFAPICNPVNCPWGQKAFTNYLGSNKADWEEYDA------ 207
G G +Y L+ Y V+ + NP C + +F SNKA + +
Sbjct: 386 GMPGGRNLYRIQLNDYTKVTCLSCELNPERCQYYSASF-----SNKAKYYQLRCFGPGLP 440
Query: 208 -TSLVSKNKNVSATILIDQGQDDKFLPDQLFPNK 240
+L S + + +L D DK L D P+K
Sbjct: 441 LYTLHSSSSDKELRVLEDNSALDKMLQDVQMPSK 474
>pdb|2XMZ|A Chain A, Structure Of Menh From S. Aureus
Length = 269
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 17/78 (21%)
Query: 105 GAGFYLNATQEKWKNWRMYDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLK 164
G G ++ E W +DY+ L ++L + + ++FG+SMGG AL
Sbjct: 52 GHGEDQSSMDETWN----FDYITTLLDRILD----KYKDKSITLFGYSMGGRVAL----- 98
Query: 165 NLDKYKSVSAFAPICNPV 182
Y +++ PI N +
Sbjct: 99 ----YYAINGHIPISNLI 112
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 123 YDYVVKELPKLLSENFPQLETSRASIFGHSMGGHGALTIYLKNLDKYKSVSAFAP 177
Y+ VV + ++ E T + + GHS+GG AL L +D Y+ +P
Sbjct: 116 YEQVVNDYFPVVQEQLTAHPTYKVIVTGHSLGGAQAL---LAGMDLYQREPRLSP 167
>pdb|2VLN|B Chain B, N75a Mutant Of E9 Dnase Domain In Complex With Im9
Length = 134
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 176 APICNPVNCPWGQKAFTNYLGSNKADWEEYDATSLVSKNKNVSATILIDQG 226
API + + K F ++ KA WEE +SKN N SA + +G
Sbjct: 32 APIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSAKSSVSKG 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,049,824
Number of Sequences: 62578
Number of extensions: 388469
Number of successful extensions: 1051
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 987
Number of HSP's gapped (non-prelim): 26
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)