BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023326
MICRSSWVMGFGFSNSCRIPPLQTASGFSLLTTKLATSNPHLKCFLNQNKQPPVSNSNAN
ASKKNKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWET
EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAES
LWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF
QRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWYESGSTN

High Scoring Gene Products

Symbol, full name Information P value
AT4G18975 protein from Arabidopsis thaliana 1.4e-73
emb1417
AT4G21190
protein from Arabidopsis thaliana 4.2e-40
AT1G04590 protein from Arabidopsis thaliana 3.5e-27

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023326
        (284 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006498 - symbol:AT4G18975 "AT4G18975" speci...   743  1.4e-73   1
TAIR|locus:2127388 - symbol:emb1417 "AT4G21190" species:3...   427  4.2e-40   1
TAIR|locus:2197783 - symbol:AT1G04590 "AT1G04590" species...   305  3.5e-27   1


>TAIR|locus:505006498 [details] [associations]
            symbol:AT4G18975 "AT4G18975" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] InterPro:IPR002885 GO:GO:0009507 EMBL:CP002687
            GenomeReviews:CT486007_GR EMBL:AL021711 EMBL:AL161549
            PROSITE:PS51375 TIGRFAMs:TIGR00756 EMBL:BT012648 EMBL:AK221620
            IPI:IPI00534141 IPI:IPI00656620 IPI:IPI00921719 PIR:T05034
            RefSeq:NP_001031667.1 RefSeq:NP_001119009.1 RefSeq:NP_001190768.1
            RefSeq:NP_567571.1 UniGene:At.23239 ProteinModelPortal:Q2V3H0
            STRING:Q2V3H0 EnsemblPlants:AT4G18975.1 EnsemblPlants:AT4G18975.3
            EnsemblPlants:AT4G18975.4 GeneID:827633 KEGG:ath:AT4G18975
            TAIR:At4g18975 eggNOG:NOG293136 HOGENOM:HOG000242355
            InParanoid:Q2V3H0 OMA:NEKEAVY PhylomeDB:Q2V3H0
            ProtClustDB:CLSN2689504 Genevestigator:Q2V3H0 Uniprot:Q2V3H0
        Length = 287

 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 138/200 (69%), Positives = 163/200 (81%)

Query:    75 EQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXX 134
             E HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP           
Sbjct:    82 EHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPIIAAAKALQIL 141

Query:   135 XXXGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194
                 QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAESLWNMILHT TRSI 
Sbjct:   142 RKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNMILHTHTRSIP 201

Query:   195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254
             +RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF+ + Q++ +KL+L+
Sbjct:   202 RRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELNQEENRKLILR 261

Query:   255 KYLSKWKYIHFKGERVRVRR 274
             +YLS++KYI+F GERVRV+R
Sbjct:   262 RYLSEYKYIYFNGERVRVKR 281


>TAIR|locus:2127388 [details] [associations]
            symbol:emb1417 "AT4G21190" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0009793 "embryo development
            ending in seed dormancy" evidence=NAS] InterPro:IPR002885
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161554
            PROSITE:PS51375 EMBL:AL021960 Pfam:PF01535 Pfam:PF13812
            TIGRFAMs:TIGR00756 HOGENOM:HOG000242355 EMBL:AK175548 EMBL:AK176577
            EMBL:AK176584 EMBL:AY084397 IPI:IPI00524396 PIR:T04950
            RefSeq:NP_567622.1 UniGene:At.23696 UniGene:At.71130
            ProteinModelPortal:Q8LG95 PRIDE:Q8LG95 EnsemblPlants:AT4G21190.1
            GeneID:827867 KEGG:ath:AT4G21190 TAIR:At4g21190 eggNOG:NOG314664
            InParanoid:Q8LG95 OMA:GQGRTMG PhylomeDB:Q8LG95
            ProtClustDB:CLSN2689533 Genevestigator:Q8LG95 Uniprot:Q8LG95
        Length = 307

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 83/197 (42%), Positives = 117/197 (59%)

Query:    78 LWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXX 137
             +W+ R   G+  KA  ++  +  L N K  VYGALD + AWE EFP              
Sbjct:    45 VWKTRKRIGTISKAAKMIACIKGLSNVKEEVYGALDSFIAWELEFPLVIVKKALVILEDE 104

Query:   138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
              +W ++IQV KWMLSKGQG TMGTY +LL A  +D+R DEAE LWN +         ++ 
Sbjct:   105 KEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALAEDNRLDEAEELWNKLFMEHLEGTPRKF 164

Query:   198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257
             F++MIS+Y   DM  K+ EVFADMEELGV+P+   V  +   F ++   DK + ++KKY 
Sbjct:   165 FNKMISIYYKRDMHQKLFEVFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYP 224

Query:   258 S-KWKYIHFKGERVRVR 273
               +W++ + KG RV+V+
Sbjct:   225 PPQWEFRYIKGRRVKVK 241


>TAIR|locus:2197783 [details] [associations]
            symbol:AT1G04590 "AT1G04590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0000278 "mitotic cell cycle"
            evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
            EMBL:CP002684 IPI:IPI00516308 RefSeq:NP_849590.1 UniGene:At.56217
            ProteinModelPortal:F4I5Q5 PRIDE:F4I5Q5 DNASU:839484
            EnsemblPlants:AT1G04590.2 GeneID:839484 KEGG:ath:AT1G04590
            OMA:HQIGENI PhylomeDB:F4I5Q5 Uniprot:F4I5Q5
        Length = 384

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 62/167 (37%), Positives = 96/167 (57%)

Query:    94 LVRIVSELPNEKHAVYGALDKWTAWETEFPXXXXXXXXXXXXXXGQWLRVIQVAKWMLSK 153
             LV  + ++ + K AVYGALD W AWE  FP               QW R++QV KW+LSK
Sbjct:   149 LVNTLLDIEDNKEAVYGALDAWVAWERNFPIASLKIVIASLEKEHQWHRMVQVIKWILSK 208

Query:   154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213
             GQG TMGTY  L+ A D D RA+EA  +W   +     S+  +L  +M+ +Y  ++M  +
Sbjct:   209 GQGNTMGTYGQLIRALDMDRRAEEAHVIWRKKVGNDLHSVPWQLCLQMMRIYFRNNMLQE 268

Query:   214 IIEV---FADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256
             +++V   F D+E    +P D+  V+ +A A++ +G  D+++ V+ KY
Sbjct:   269 LVKVMKLFKDLESYDRKPPDKHIVQTVADAYELLGMLDEKERVVTKY 315


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      284       249   0.00080  114 3  11 22  0.43    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  228 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.70u 0.09s 19.79t   Elapsed:  00:00:01
  Total cpu time:  19.70u 0.09s 19.79t   Elapsed:  00:00:01
  Start:  Mon May 20 21:53:15 2013   End:  Mon May 20 21:53:16 2013

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