BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023326
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2V3H0|PP322_ARATH Pentatricopeptide repeat-containing protein At4g18975,
chloroplastic OS=Arabidopsis thaliana GN=At4g18975 PE=2
SV=2
Length = 287
Score = 336 bits (861), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/270 (63%), Positives = 206/270 (76%), Gaps = 14/270 (5%)
Query: 19 IPPLQTAS------GFSLLTTKLATSNPHLK------CFLNQ--NKQPPVSNSNANASKK 64
I PLQ S FSLL + S LK C ++ K+ + A+
Sbjct: 12 IFPLQGLSKSQEFICFSLLQSPRCGSYSSLKTKRFGFCIRSKFSEKEAGKLDRGYVATVN 71
Query: 65 NKLVVKVGKKEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPL 124
+K + KVGKKE HLW+K DSAGSGQKALNLVR++S LPNEK AVYGAL+KW AWE EFP+
Sbjct: 72 SKEIKKVGKKEHHLWKKNDSAGSGQKALNLVRMLSGLPNEKEAVYGALNKWVAWEVEFPI 131
Query: 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNM 184
IAAAKAL+ILRKR QW RVIQ+AKWMLSKGQGATMGTYD LLLAFD D RADEAESLWNM
Sbjct: 132 IAAAKALQILRKRSQWHRVIQLAKWMLSKGQGATMGTYDILLLAFDMDERADEAESLWNM 191
Query: 185 ILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
ILHT TRSI +RLF+RMI+LY HHD+ +K+IEVFADMEEL V PDED+ RR+A AF+ +
Sbjct: 192 ILHTHTRSIPRRLFARMIALYAHHDLHDKVIEVFADMEELKVSPDEDSARRVARAFRELN 251
Query: 245 QDDKQKLVLKKYLSKWKYIHFKGERVRVRR 274
Q++ +KL+L++YLS++KYI+F GERVRV+R
Sbjct: 252 QEENRKLILRRYLSEYKYIYFNGERVRVKR 281
>sp|Q8LG95|PP332_ARATH Pentatricopeptide repeat-containing protein At4g21190
OS=Arabidopsis thaliana GN=EMB1417 PE=2 SV=1
Length = 307
Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/224 (41%), Positives = 134/224 (59%), Gaps = 5/224 (2%)
Query: 55 SNSNANASKKNKLVVKVGK----KEQHLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYG 110
S++ K N +VV + + +W+ R G+ KA ++ + L N K VYG
Sbjct: 18 SSTKLFTKKPNNVVVCAARGPRPRSPRVWKTRKRIGTISKAAKMIACIKGLSNVKEEVYG 77
Query: 111 ALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170
ALD + AWE EFPL+ KAL IL +W ++IQV KWMLSKGQG TMGTY +LL A
Sbjct: 78 ALDSFIAWELEFPLVIVKKALVILEDEKEWKKIIQVTKWMLSKGQGRTMGTYFSLLNALA 137
Query: 171 KDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230
+D+R DEAE LWN + ++ F++MIS+Y DM K+ EVFADMEELGV+P+
Sbjct: 138 EDNRLDEAEELWNKLFMEHLEGTPRKFFNKMISIYYKRDMHQKLFEVFADMEELGVKPNV 197
Query: 231 DTVRRIASAFQRVGQDDKQKLVLKKY-LSKWKYIHFKGERVRVR 273
V + F ++ DK + ++KKY +W++ + KG RV+V+
Sbjct: 198 AIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVK 241
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 145 QVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN-MILHTQTRSISKRLFSRMIS 203
QV + M + G TY+ LL + K HR EA + N M+L+ + SI ++ +IS
Sbjct: 300 QVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVT--YNSLIS 357
Query: 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245
Y M ++ +E+ M E G +PD T + S F+R G+
Sbjct: 358 AYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK 399
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
+ G +++ M KG + TY TLL F++ + + A S++ + + + +
Sbjct: 361 RDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKP-NI 419
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
F+ I +Y + +++++F ++ G+ PD T + + F + G D + V K+
Sbjct: 420 CTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKE 479
Score = 36.2 bits (82), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/133 (19%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 123 PLIAAAKALRILRKR-GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESL 181
P +A +L + R + + ++ + +L+KG + +Y+T++ A+ ++ R +A +
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 182 WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241
++ + ++ ++ I Y M + I V M + G RP+++T I +
Sbjct: 722 FSEMRNSGIVP-DVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYC 780
Query: 242 RVGQDDKQKLVLK 254
++ + D+ KL ++
Sbjct: 781 KLNRKDEAKLFVE 793
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 144 IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203
++V M+ G ++ TY++L+ A+ +D DEA L N + T+ ++ ++S
Sbjct: 334 MKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKP-DVFTYTTLLS 392
Query: 204 LYDHHDMPNKIIEVFADMEELGVRPD 229
++ + +F +M G +P+
Sbjct: 393 GFERAGKVESAMSIFEEMRNAGCKPN 418
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 17/219 (7%)
Query: 55 SNSNANASKKNKLV---VKVGKKEQHLWQKRDSAGSGQKAL-----NLVRIVSELPNEKH 106
S+ NA N + K + E+ LW ++ G G + ++R + E
Sbjct: 218 SHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQ-QFEFI 276
Query: 107 AVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLL 166
VY L + A + I + L + ++ ++VA M G Y+ L+
Sbjct: 277 KVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLI 336
Query: 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV 226
+ R +EAE ++ + + SI+ ++ MI++Y HHD +K IE+ +ME +
Sbjct: 337 HTLARAGRLEEAERVFRVEMPELGVSINTSTYNSMIAMYCHHDEEDKAIELLKEMESSNL 396
Query: 227 -RPDEDTVRRIA-SAFQR-----VGQDDKQKLVLKKYLS 258
PD T + + S F+R VG+ K+ +V K +LS
Sbjct: 397 CNPDVHTYQPLLRSCFKRGDVVEVGKLLKE-MVTKHHLS 434
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEV 217
T Y ++L A+ K + EAES++N + ++ M+ Y+ + K E+
Sbjct: 564 TKEVYSSVLCAYSKQGQVTEAESIFNQMKMAGCEP-DVIAYTSMLHAYNASEKWGKACEL 622
Query: 218 FADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKG 267
F +ME G+ PD + AF + GQ +++ L + K I F G
Sbjct: 623 FLEMEANGIEPDSIACSALMRAFNKGGQPSNVFVLMD--LMREKEIPFTG 670
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/82 (19%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220
+Y LL ++ + + +A+ ++ +++ + R + ++ +I Y + + +E+F
Sbjct: 392 SYTCLLNSYGRSRQPGKAKEVF-LMMRKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQ 450
Query: 221 MEELGVRPDEDTVRRIASAFQR 242
ME+ G++P+ +V + +A R
Sbjct: 451 MEQDGIKPNVVSVCTLLAACSR 472
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
G + I++ M+SKG T TY+TL+ + K+ +AD AE L +L ++++
Sbjct: 392 GSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGF-NVNQGS 450
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248
F+ +I L H M + + +M + P + + S + G+ K
Sbjct: 451 FTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSK 501
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
G + I++ + M KG T + T+L + K + A++LWN ++ +
Sbjct: 188 GTPEKAIEIMRQMQGKGMEVTTIAFTTILSSLYKKGELEVADNLWNEMVKKGCELDNAAY 247
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252
R++S + P ++ E+ +M +G++PD + + +A+ G D+ K V
Sbjct: 248 NVRIMSA--QKESPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGMLDEAKKV 300
>sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2
SV=1
Length = 866
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 178 AESLWNMILHTQTRSISKRLFSRM-----------ISLYDHHDMPNKIIEVFADMEELGV 226
SL M L+ + +++LFSRM IS Y+++ +P+K I+ + M++ V
Sbjct: 335 CNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSV 394
Query: 227 RPDEDTVRRIASAFQRVGQDDK----QKLVLKKYLSKW 260
+PDE TV + SA +G D KL +K L +
Sbjct: 395 KPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY 432
>sp|Q9ZUU7|PP174_ARATH Pentatricopeptide repeat-containing protein At2g28050
OS=Arabidopsis thaliana GN=At2g28050 PE=2 SV=1
Length = 462
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 146 VAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205
V K M + + +Y L+ F + +EAE L +++H + + L++ +++ Y
Sbjct: 268 VLKLMEKESVMLDLDSYKVLIDGFTSYGKVEEAERLV-LMMHDKKLRVESYLYNLIMNGY 326
Query: 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245
+ K+IE++++M GV P++DT + + + G+
Sbjct: 327 SRFGLVEKVIELYSEMSSRGVTPNKDTYWVLMNGLCKAGK 366
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 1/111 (0%)
Query: 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201
+VI++ M S+G TY L+ K + EA S N L I + ++S +
Sbjct: 334 KVIELYSEMSSRGVTPNKDTYWVLMNGLCKAGKVCEAMSFLNE-LRVNEFEIDEEMYSTL 392
Query: 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252
M +K +EV A+M G P R+A + V + + Q L+
Sbjct: 393 SEECYRVGMIDKSLEVVAEMIRDGFIPGATICERLADSLFEVNRKEAQMLI 443
>sp|Q8GZ63|PP397_ARATH Pentatricopeptide repeat-containing protein At5g25630
OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=2
Length = 574
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-- 195
G +Q M G T TY+TL+ + + + + L +++L +
Sbjct: 129 GNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPERSSELLDLMLEEGNVDVGPNI 188
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK------Q 249
R F+ ++ + + EV MEE GVRPD T IA+ + + G+ + +
Sbjct: 189 RTFNVLVQAWCKKKKVEEAWEVVKKMEECGVRPDTVTYNTIATCYVQKGETVRAESEVVE 248
Query: 250 KLVLKK 255
K+V+K+
Sbjct: 249 KMVMKE 254
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188
K + +L +RG+ V K + G ++ +Y TLL A + S+ + + +
Sbjct: 50 KLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQS 109
Query: 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248
T+ + F+ +I+ + ++ M+ELG+ P T + + G+ ++
Sbjct: 110 GTK-LDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPER 168
Query: 249 QKLVLKKYLSK 259
+L L +
Sbjct: 169 SSELLDLMLEE 179
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 51/107 (47%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
G + +++ + M G T T++TL+ + K + +E+ L +M+L + + R
Sbjct: 403 GNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRT 462
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
+ ++ + + + + M+ GV+PD T +A A+ R+G
Sbjct: 463 CNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIG 509
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187
K + L +RG+ + ++ +G ++ TY TL+ A R SL ++I
Sbjct: 323 TKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALT---RQKHFHSLLSLISK 379
Query: 188 TQTRSISKR--LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245
+ + LF+ +I+ ++ +++F M+E G +P T + + ++G+
Sbjct: 380 VEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGK 439
Query: 246 DDKQKLVLKKYL 257
++ +L L
Sbjct: 440 LEESSRLLDMML 451
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SK 195
G+ + + + + + S+G ++ TY+ L+ F R + M+ + R I SK
Sbjct: 352 GKLGKALSLCRDLKSRGLSPSLVTYNILVSGF---CRKGDTSGAAKMVKEMEERGIKPSK 408
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
++ +I + D K I++ MEELG+ PD T + F GQ ++ + K
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468
Query: 256 YLSK 259
+ K
Sbjct: 469 MVEK 472
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 77 HLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEF---PLIAAAKALRI 133
+L K ++A + I+ L +H V AL+ + ET+ ++ + +
Sbjct: 171 NLLNKMEAAKIEADVVIFNTIIDSLCKYRH-VDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193
L G+W Q+ M+ K + T++ L+ AF K+ + EAE L + ++ RSI
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIK---RSI 286
Query: 194 SKRLFS--RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242
+F+ +I+ + HD +K ++F M PD DT + F +
Sbjct: 287 DPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 145 QVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204
Q+ ++M+SK + TY+TL+ F K R ++ L+ + H + + + L
Sbjct: 311 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 370
Query: 205 YDHHDMPNKIIEVFADMEELGVRPD 229
+ D N +VF M GV PD
Sbjct: 371 FHDGDCDNA-QKVFKQMVSDGVPPD 394
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQ-TRSISKRLFSRMISLYDHHDMPNKIIEVFA 219
TY TL++ F ++ + ++A +W+ + + T ++S F+ +I HH +E F
Sbjct: 488 TYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVST--FNSLIGGLCHHGKTELAMEKFD 545
Query: 220 DMEELGVRPDEDTVRRIASAFQRVGQDDK 248
++ E G+ PD+ T I + + G+ +K
Sbjct: 546 ELAESGLLPDDSTFNSIILGYCKEGRVEK 574
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220
T + LL K+ ++A + +N ++ + R + ++ MIS + + ++ ++
Sbjct: 593 TCNILLNGLCKEGMTEKALNFFNTLI--EEREVDTVTYNTMISAFCKDKKLKEAYDLLSE 650
Query: 221 MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260
MEE G+ PD T S G+ + +LKK+ K+
Sbjct: 651 MEEKGLEPDRFTYNSFISLLMEDGKLSETDELLKKFSGKF 690
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 8/105 (7%)
Query: 141 LRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ---TRSISKRL 197
L +I V + +LS + A +LL+++ + +D + SL N +LH + SK L
Sbjct: 79 LPLISVVRSLLSHHKFADA---KSLLVSYIR--TSDASLSLCNSLLHPNLHLSPPPSKAL 133
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242
F +S Y H P+ +++F M L ++P+ T + R
Sbjct: 134 FDIALSAYLHEGKPHVALQIFQKMIRLKLKPNLLTCNTLLIGLVR 178
>sp|Q9SNB7|PP264_ARATH Pentatricopeptide repeat-containing protein At3g46610
OS=Arabidopsis thaliana GN=At3g46610 PE=2 SV=1
Length = 665
Score = 39.3 bits (90), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 144 IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL--FSRM 201
IQ+ K M+ G+ T+ +Y LL A +K DEA +WN H I L ++ M
Sbjct: 478 IQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWN---HMIKVGIEPNLYAYTTM 534
Query: 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
S+ N + + +M G+ P T + S R G
Sbjct: 535 ASVLTGQQKFNLLDTLLKEMASKGIEPSVVTFNAVISGCARNG 577
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS- 194
K G+ +++ M G TY+ +L K R++E + M+ ++ S
Sbjct: 398 KAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNE---MIKMLCDMKSNGCSP 454
Query: 195 -KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246
+ ++ M++L + M + VF +M+ G PD DT + SA+ R G +
Sbjct: 455 NRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSE 507
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 112 LDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK 171
LDK E + A L + G++ + I + + M G T+ TY+ +L F K
Sbjct: 198 LDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGK 257
Query: 172 DHRADEAESLWNMILHTQTRSISKRL------FSRMISLYDHHDMPNKIIEVFADMEELG 225
R+ W IL SK L S ++S + + E FA+++ G
Sbjct: 258 MGRS------WRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCG 311
Query: 226 VRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
P T + F + G + VLK+
Sbjct: 312 YEPGTVTYNALLQVFGKAGVYTEALSVLKE 341
>sp|Q9LIE7|PP246_ARATH Pentatricopeptide repeat-containing protein At3g22150,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2
SV=1
Length = 820
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 186 LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245
+ +QT+ + ++ MI Y H M + I +F M+E G++PD T + SA G
Sbjct: 578 MFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGL 637
Query: 246 DDK 248
D+
Sbjct: 638 IDE 640
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 38.5 bits (88), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLW-NMILHTQTRSIS 194
K GQ + K ML +G T T++T++ + + + E SL M LH +
Sbjct: 310 KSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMKLHCAPDT-- 367
Query: 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240
R ++ +ISL+ ++ + F +M++ G++PD + R + AF
Sbjct: 368 -RTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAF 412
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 133 ILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191
IL+++ W R +++ +W SKG + Y+ +L K + +SLW+ ++ +
Sbjct: 160 ILKEQIHWERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIK 219
Query: 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKL 251
I+ + +I +Y + + M ++G++PDE T + +++ + K +
Sbjct: 220 PINST-YGTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEE 278
Query: 252 VLKK 255
KK
Sbjct: 279 FFKK 282
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 69/149 (46%), Gaps = 8/149 (5%)
Query: 103 NEKHAVYGALDKWTAWETEFPLIAAAKAL-RILRKRGQWLRVIQVAKWMLSKGQGATMGT 161
+E A+Y L + + +T++P + + + + +R + + M +G+ A T
Sbjct: 662 DEAEAIYRKLLQ-SCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFDSMKQRGE-ANEFT 719
Query: 162 YDTLLLAFDKDHRADEAESLWNMI--LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219
+ +L + K+ R +EA + + + T +S ++ ++ L+ + +E F
Sbjct: 720 FAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLS---YNSVLGLFALDGRFKEAVETFK 776
Query: 220 DMEELGVRPDEDTVRRIASAFQRVGQDDK 248
+M G++PD+ T + + + ++G K
Sbjct: 777 EMVSSGIQPDDSTFKSLGTILMKLGMSKK 805
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 9/124 (7%)
Query: 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191
+L K W + VA M S+G A + A+ + EAE ++ R
Sbjct: 451 EMLEKSWSWFKRFHVAGNMSSEGYSANID-------AYGERGYLSEAERVFICCQEVNKR 503
Query: 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKL 251
++ + ++ MI Y K E+F M GV PD+ T + K +
Sbjct: 504 TVIE--YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRC 561
Query: 252 VLKK 255
L+K
Sbjct: 562 YLEK 565
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
++G R + + KG + TY L+ K AE L N + ++ +I++
Sbjct: 341 RKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNE-MQSKGVNITQ 399
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250
+F+ +I Y M ++ ++ ME+ G + D T IAS F R+ + D+ K
Sbjct: 400 VVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAK 454
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 38.1 bits (87), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 68/136 (50%), Gaps = 1/136 (0%)
Query: 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN 183
++A + + K G+ ++ K M+ +G TY +L+ F K+++ D+A + +
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376
Query: 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243
+++ ++ + R F+ +I+ Y ++ + +E+F M GV D T + F +
Sbjct: 377 LMV-SKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 435
Query: 244 GQDDKQKLVLKKYLSK 259
G+ + K + ++ +S+
Sbjct: 436 GKLEVAKELFQEMVSR 451
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 38.1 bits (87), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 168 AFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227
+ K R D+A+ +++ QT ++ MIS Y D P + + VF +M G++
Sbjct: 287 GYSKCGRLDDAQVIFD-----QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341
Query: 228 PDEDTVRRIASAFQRVGQDDKQK 250
PD ++ + SA +G DK K
Sbjct: 342 PDVVSMFSVISACANLGILDKAK 364
>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein At5g59600
OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
Length = 534
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243
MIL +T + F+ MI Y +H + +K +E+F ME G + D T I +A
Sbjct: 343 MILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHA 402
Query: 244 GQDD 247
G D
Sbjct: 403 GLTD 406
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 33/58 (56%)
Query: 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254
+F+ MIS Y ++ ++ + + DM+ LG++PD T + S F + ++K +L+
Sbjct: 185 VFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILE 242
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 37.7 bits (86), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 55/135 (40%)
Query: 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN 183
+I+ + + +L GQ ML +G + T +L+ +A LWN
Sbjct: 281 VISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWN 340
Query: 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243
++ + ++ ++ + H K + VF+ MEE+G P+ T + + F +
Sbjct: 341 QMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKR 400
Query: 244 GQDDKQKLVLKKYLS 258
G D + K L+
Sbjct: 401 GSLDGAVYIWNKMLT 415
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 37.7 bits (86), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 30/153 (19%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK---------------DHRADEAESLW 182
G W + ++V M+S G + T+ ++L A + + R + E L
Sbjct: 389 GNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDELLL 448
Query: 183 NMILHTQTRSISK----RLFSR-----------MISLYDHHDMPNKIIEVFADMEELGVR 227
+ +L ++ ++ R+F+ MIS Y H P + + F +M++ G++
Sbjct: 449 SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLK 508
Query: 228 PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260
PD T+ + SA G D+ + SK+
Sbjct: 509 PDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKY 541
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 37.7 bits (86), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221
Y+ + F K +++E L++ +L + F+ +IS + +P + +E F M
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKP-DNATFTTIISCARQNGVPKRAVEWFEKM 236
Query: 222 EELGVRPDEDTVRRIASAFQRVGQDD 247
G PD T+ + A+ R G D
Sbjct: 237 SSFGCEPDNVTMAAMIDAYGRAGNVD 262
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
K+G+ + + M+ +G TY L+ K+ + D+AE ++ + + I+
Sbjct: 569 KKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFR---EMRGKGIAP 625
Query: 196 RLFSRMISLYDHHDMPN--KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253
+FS + + + N K +F +M E G+ P+ + F R G+ +K K +L
Sbjct: 626 DVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELL 685
Query: 254 KK 255
+
Sbjct: 686 DE 687
>sp|Q9SQU6|PP216_ARATH Pentatricopeptide repeat-containing protein At3g06430,
chloroplastic OS=Arabidopsis thaliana GN=EMB2750 PE=2
SV=1
Length = 486
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188
K L +L K GQ R ++ ML +G T+ Y LL A+ + + D+A S+ + +
Sbjct: 129 KLLVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSF 188
Query: 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248
+S ++ + + ++ +M+E + P+ T + S + RVG+ D+
Sbjct: 189 PQCQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQ 248
Query: 249 QKLVLKKYL 257
+ VL L
Sbjct: 249 MEKVLSDML 257
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 37.7 bits (86), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 9/171 (5%)
Query: 77 HLWQKRDSAGSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEF---PLIAAAKALRI 133
+L K ++A + I+ L +H V AL+ + ET+ ++ + +
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRH-VDDALNLFKEMETKGIRPNVVTYSSLISC 304
Query: 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193
L G+W Q+ M+ K + T++ L+ AF K+ + EAE L++ ++ RSI
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIK---RSI 361
Query: 194 SKRLFS--RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242
+F+ +++ + HD +K ++F M PD T + F +
Sbjct: 362 DPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCK 412
>sp|Q9ZUT5|PP191_ARATH Pentatricopeptide repeat-containing protein At2g37310
OS=Arabidopsis thaliana GN=PCMP-E49 PE=2 SV=1
Length = 657
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258
+ +I+ Y H + +F M+ LG +PD+ T+ + SAF G D + + L+
Sbjct: 436 TAIITAYAVHGDSDSACSLFDQMQCLGTKPDDVTLTAVLSAFAHSGDSDMAQHIFDSMLT 495
Query: 259 KW 260
K+
Sbjct: 496 KY 497
>sp|Q9SGQ6|PP126_ARATH Pentatricopeptide repeat-containing protein At1g76280
OS=Arabidopsis thaliana GN=At1g76280 PE=2 SV=2
Length = 773
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243
F+ +++ YD D P + + V A M+EL +RPD T + S F V
Sbjct: 406 FNNLLAAYDSLDQPERAVRVLARMKELKLRPDMRTYELLFSLFGNV 451
>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520,
mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2
SV=1
Length = 418
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
G+ + +++ + M KG T+ + T+L + K+ DEAESLW +++ +
Sbjct: 188 GKPEKAMEIMRDMEVKGVEVTIIAFTTILGSLYKNGLVDEAESLWIEMVNKGCDLDNTVY 247
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240
R+++ + P ++ E+ +M +G++PD + + +A+
Sbjct: 248 NVRLMNA--AKESPERVKELMEEMSSVGLKPDTVSYNYLMTAY 288
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
++G + + ML +G + TY+T+L K EA+ L+N R++
Sbjct: 422 RKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFN---EMTERALFP 478
Query: 196 RLFSRMISLYDHHDMPN--KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253
++ I + H + N +E+F M+E +R D T + F +VG D K +
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538
Query: 254 KKYLSK 259
+SK
Sbjct: 539 ADMVSK 544
Score = 35.8 bits (81), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193
L K G++ R +V ML G TY +LL+ K E E +++ ++R +
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFS---DMRSRDV 371
Query: 194 SKRL--FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
L FS M+SL+ +K + F ++E G+ PD + + R G
Sbjct: 372 VPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG 424
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193
+ K G +L +Q KG + TY+TL+ A+ +EA L N + + S
Sbjct: 251 MEKVGTFLSQVQ------EKGVYPDIVTYNTLISAYSSKGLMEEAFELMNA-MPGKGFSP 303
Query: 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236
++ +I+ H + EVFA+M G+ PD T R +
Sbjct: 304 GVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSL 346
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 144 IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203
I+V + M +G + T++T++ +D R +A + M+ R + M
Sbjct: 279 IRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDA---YRMLDEMPKRGCQPDSITYM-C 334
Query: 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYI 263
L+ + P++I+ +F M GVRP DT + F+R G L+ L WK +
Sbjct: 335 LFSRLEKPSEILSLFGRMIRSGVRPKMDTYVMLMRKFERWG-------FLQPVLYVWKTM 387
Query: 264 HFKGE 268
G+
Sbjct: 388 KESGD 392
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 53/127 (41%)
Query: 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
G + +++ + M G ++ T+++LL K R A L++ + T +
Sbjct: 152 GLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYT 211
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257
F+ +I+ + + M ++ +F DME PD T I R G+ VL L
Sbjct: 212 FNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGML 271
Query: 258 SKWKYIH 264
K +H
Sbjct: 272 KKATDVH 278
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 145 QVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204
QV K LS Q + L+ + K D A ++N + + R++ ++ MI+
Sbjct: 499 QVVKLGLSCNQPVC----NALISMYSKCGSIDTASRVFNFM---ENRNVIS--WTSMITG 549
Query: 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244
+ H +++E F M E GV+P+E T I SA VG
Sbjct: 550 FAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVG 589
>sp|Q9FNN9|PP370_ARATH Putative pentatricopeptide repeat-containing protein At5g08490
OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1
Length = 849
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 148 KWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207
K L + T+ +Y++LL + D+A+ L+ T+ + +S M+ +Y
Sbjct: 491 KIFLGLSERRTLVSYNSLLSGYVNSGSHDDAQMLF-----TEMSTTDLTTWSLMVRIYAE 545
Query: 208 HDMPNKIIEVFADMEELGVRPDEDTVRRI 236
PN+ I VF +++ G+RP+ T+ +
Sbjct: 546 SCCPNEAIGVFREIQARGMRPNTVTIMNL 574
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201
R I+ + M+S+G + TY+T+L A KD + ++A + N L ++ S ++ +
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ-LSSKGCSPVLITYNTV 455
Query: 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261
I K I++ +M ++PD T + R G+ D+ K
Sbjct: 456 IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEA----------IK 505
Query: 262 YIHFKGERVRVRRDA 276
+ H + ER+ +R +A
Sbjct: 506 FFH-EFERMGIRPNA 519
>sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060,
mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2
SV=1
Length = 510
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEV 217
T+ TY+ ++ F R D A +W+ + + +FS +I+ H + ++ E
Sbjct: 403 TVSTYEIMVRMFCNKERLDMAIKIWDE-MKGKGVLPGMHMFSSLITALCHENKLDEACEY 461
Query: 218 FADMEELGVRPDEDTVRRIASAFQRVGQDDK-QKLVLK 254
F +M ++G+RP R+ G+ DK LV+K
Sbjct: 462 FNEMLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVK 499
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220
TY ++ + + DEA L+N ++ T+ +++ ++ ++ + M +K I+VF+
Sbjct: 272 TYTIMIRTMGRIGKCDEAVGLFNEMI-TEGLTLNVVGYNTLMQVLAKGKMVDKAIQVFSR 330
Query: 221 MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL---KKYLSKWKY 262
M E G RP+E T + + GQ + V+ K+Y+++ Y
Sbjct: 331 MVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIY 375
>sp|Q8U1R8|IF2P_PYRFU Probable translation initiation factor IF-2 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=infB
PE=3 SV=1
Length = 984
Score = 36.6 bits (83), Expect = 0.22, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRD 275
E+F E+ V+ +E VR++ G D++ + L L W+ H KGE +RV+ +
Sbjct: 39 ELFELANEVVVKDEEKEVRKLGKML--TGVDERGNVKLLNALYVWRVAH-KGEMIRVKVN 95
Query: 276 AWY 278
WY
Sbjct: 96 GWY 98
>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705,
mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2
SV=1
Length = 492
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 2/166 (1%)
Query: 90 KALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKW 149
K L +S L + K +VY L W + + + + LR+R ++L ++V+KW
Sbjct: 23 KKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRKRFLHALEVSKW 82
Query: 150 MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209
M G T + L D R + + + + + + + +++ Y
Sbjct: 83 MNETGVCVFSPTEHAVHL--DLIGRVYGFVTAEEYFENLKEQYKNDKTYGALLNCYVRQQ 140
Query: 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
K + F M+E+G T I + +GQ +K VL++
Sbjct: 141 NVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEE 186
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 101 LPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG 160
L KH +Y L +T FPL+ A RK G I + ++ G +
Sbjct: 100 LSIRKHGLY--LHGFT-----FPLVLKACTRASSRKLG-----IDLHSLVVKCGFNHDVA 147
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220
+LL + R ++A L++ I RS+ ++ + S Y + I++F
Sbjct: 148 AMTSLLSIYSGSGRLNDAHKLFDEI---PDRSVVT--WTALFSGYTTSGRHREAIDLFKK 202
Query: 221 MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254
M E+GV+PD + ++ SA VG D + ++K
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVK 236
>sp|Q9LJR6|PP253_ARATH Putative pentatricopeptide repeat-containing protein At3g25060,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3
SV=1
Length = 601
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 180 SLWNMILHTQTRSISKRLFSRM-----------ISLYDHHDMPNKIIEVFADMEELGVRP 228
SL +M ++ R+FSRM IS + + + NK E +M+ LG +P
Sbjct: 257 SLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQP 316
Query: 229 DEDTVRRIASAFQRVGQDDKQKLV 252
D T+ + A +VG +LV
Sbjct: 317 DLVTLVGVLVACSQVGSLKTGRLV 340
Score = 31.2 bits (69), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260
MIS Y H +++ +F M E + PD T + SA G ++ + ++K+
Sbjct: 389 MISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMINKY 448
Query: 261 K 261
K
Sbjct: 449 K 449
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 86 GSGQKALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQ 145
G ++A+NL++++ E G +++ PLIAA + G+ I+
Sbjct: 347 GKIEEAMNLLKLMKE--------KGLTPDAYSYD---PLIAA------FCREGRLDVAIE 389
Query: 146 VAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH---TQTRSISKRLFSRMI 202
+ M+S G + Y+T+L K+ +AD+A ++ + + S +FS +
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248
S D + I+E+ ++ G+ PDE T + S R G D+
Sbjct: 450 SSGDKIRALHMILEMMSN----GIDPDEITYNSMISCLCREGMVDE 491
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220
TY L+ AF ++ ++AE ++ L +++ ++ Y P E+F+
Sbjct: 301 TYTALVNAFAREGLCEKAEEIFEQ-LQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSL 359
Query: 221 MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
M+ +G PD + + A+ R G + V ++
Sbjct: 360 MQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFEE 394
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190
L + + GQ+ ++ ++ M + A + TY+ L+ + K + E L+ +
Sbjct: 446 LNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKAGFLERIEELFVELKEKNF 505
Query: 191 RSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250
R SR I Y + K +EVF +M + G PD T + + SA Q ++
Sbjct: 506 RPDVVTWTSR-IGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLSACSSEEQVEQVT 564
Query: 251 LVLK 254
VL+
Sbjct: 565 SVLR 568
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Query: 112 LDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK 171
D+ T E + + L + K GQ ++ M K + +Y T++ F K
Sbjct: 362 FDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAK 421
Query: 172 DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED 231
R DEA +L+ + + ++ + ++ ++S+Y + +++ +M +G++ D
Sbjct: 422 AGRFDEALNLFGEMRYLGI-ALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480
Query: 232 TVRRIASAFQRVGQDDKQKLVLKK 255
T + + + G+ D+ K V +
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTE 504
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 22/110 (20%)
Query: 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----SISKRLF---------------S 199
+G Y+ A ++ R +E L + ++ T R +I+KR+F S
Sbjct: 216 VGFYE---FAVKRERRKNEQGKLASAMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFS 272
Query: 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249
+IS Y + + I VF M+E G+RP+ T + A + G + KQ
Sbjct: 273 ALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQ 322
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190
L I K G+ + + + M S G + TY+ LL + K + DE + ++ +
Sbjct: 451 LSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHV 510
Query: 191 RSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229
+ +S +I Y + + +E+F + + G+R D
Sbjct: 511 LP-NLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRAD 548
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 35.8 bits (81), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Query: 143 VIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202
VIQ M KG + Y+TL+ A++K + +E E L+ + + S ++ ++
Sbjct: 365 VIQTE--MEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKP-SAATYNILM 421
Query: 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243
Y P+ + + +ME+LG+ P+ + + SA+ R
Sbjct: 422 DAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRT 462
Score = 34.7 bits (78), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 150 MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209
M +G ++ TY ++L AF + + +W ++L + + ++ ++ ++ +
Sbjct: 511 MCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKLMLREKIKG-TRITYNTLLDGFAKQG 569
Query: 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
+ + +V ++ ++G++P T + +A+ R GQD K +LK+
Sbjct: 570 LYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLKE 615
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190
L R+ G +++++ K ML + T TY+TLL F K EA + +
Sbjct: 527 LDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKMGL 586
Query: 191 RSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250
+ S ++ +++ Y K+ ++ +M L ++PD T + AF RV +D K+
Sbjct: 587 QP-SVMTYNMLMNAYARGGQDAKLPQLLKEMAALNLKPDSITYSTMIYAFVRV-RDFKRA 644
Query: 251 LVLKKYLSK 259
K + K
Sbjct: 645 FFYHKMMVK 653
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
K G+ ++ K M+ +G TY +L+ F K++ D+A + ++++ ++ +
Sbjct: 345 KEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV-SKGCDPNI 403
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
R F+ +I+ Y + + +E+F M GV D T + F +G+ + K + ++
Sbjct: 404 RTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQE 463
Query: 256 YLSK 259
+S+
Sbjct: 464 MVSR 467
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)
Query: 142 RVIQVAKWMLSKGQGATMGTYD----TLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197
R+I + + + S G A D TLL + K D A++++ RS+
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFR---EMSDRSVVS-- 364
Query: 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252
++ MI+ Y + + +++F +MEE G+ PD TV + + R D+ K V
Sbjct: 365 YTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRV 419
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195
K G+ Q+ K M+ +G TY++L+ F K++R +EA + ++++
Sbjct: 345 KEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDP-DI 403
Query: 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255
F+ +I+ Y + + +E+F +M GV + T + F + G+ + K + ++
Sbjct: 404 MTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQE 463
Query: 256 YLSK 259
+S+
Sbjct: 464 MVSR 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,696,931
Number of Sequences: 539616
Number of extensions: 4055702
Number of successful extensions: 11332
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 11064
Number of HSP's gapped (non-prelim): 320
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)