Query 023326
Match_columns 284
No_of_seqs 256 out of 2029
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.2E-27 2.5E-32 235.4 21.4 159 99-264 272-460 (697)
2 PLN03218 maturation of RBCL 1; 100.0 1.5E-26 3.2E-31 232.9 25.2 158 100-261 628-785 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 2.9E-26 6.4E-31 230.7 25.8 157 100-260 593-749 (1060)
4 PLN03081 pentatricopeptide (PP 99.9 2.1E-24 4.6E-29 212.3 24.6 136 120-260 185-355 (697)
5 PLN03077 Protein ECB2; Provisi 99.9 5.9E-25 1.3E-29 220.8 18.5 167 90-264 426-623 (857)
6 PLN03077 Protein ECB2; Provisi 99.9 7.1E-24 1.5E-28 213.0 18.6 154 99-259 235-418 (857)
7 PF13041 PPR_2: PPR repeat fam 99.6 5.2E-16 1.1E-20 100.5 6.5 50 193-242 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 3.2E-15 7E-20 96.7 6.8 50 122-171 1-50 (50)
9 KOG4422 Uncharacterized conser 99.2 5.3E-10 1.1E-14 100.3 13.7 131 123-258 206-341 (625)
10 PF12854 PPR_1: PPR repeat 99.1 6.2E-11 1.3E-15 69.9 4.3 34 224-257 1-34 (34)
11 PRK11788 tetratricopeptide rep 99.1 6.2E-09 1.3E-13 95.4 19.9 123 133-259 189-311 (389)
12 PRK11788 tetratricopeptide rep 99.1 1.2E-08 2.6E-13 93.5 19.6 171 100-279 194-369 (389)
13 PF12854 PPR_1: PPR repeat 99.1 1.6E-10 3.5E-15 68.1 4.1 32 154-185 2-33 (34)
14 KOG4422 Uncharacterized conser 98.9 2.9E-08 6.2E-13 89.3 12.9 98 159-261 207-308 (625)
15 TIGR02917 PEP_TPR_lipo putativ 98.8 6.2E-07 1.3E-11 89.6 21.1 131 122-257 768-898 (899)
16 TIGR00756 PPR pentatricopeptid 98.8 8.4E-09 1.8E-13 60.6 4.4 34 197-230 2-35 (35)
17 TIGR02917 PEP_TPR_lipo putativ 98.7 4.3E-06 9.4E-11 83.5 23.7 132 123-258 600-731 (899)
18 PF13812 PPR_3: Pentatricopept 98.6 4.5E-08 9.9E-13 57.3 4.0 33 196-228 2-34 (34)
19 TIGR02521 type_IV_pilW type IV 98.5 4.1E-05 8.8E-10 63.7 21.3 131 125-258 100-231 (234)
20 TIGR00756 PPR pentatricopeptid 98.5 1.4E-07 3.1E-12 55.2 4.2 33 126-158 2-34 (35)
21 PF01535 PPR: PPR repeat; Int 98.5 8.4E-08 1.8E-12 54.8 3.1 30 197-226 2-31 (31)
22 TIGR02521 type_IV_pilW type IV 98.5 6E-05 1.3E-09 62.7 21.5 155 99-259 44-198 (234)
23 PF13812 PPR_3: Pentatricopept 98.5 2.5E-07 5.5E-12 54.0 4.2 33 125-157 2-34 (34)
24 KOG4318 Bicoid mRNA stability 98.4 5.3E-06 1.1E-10 80.7 13.6 67 110-177 11-101 (1088)
25 COG2956 Predicted N-acetylgluc 98.3 0.00013 2.9E-09 64.0 18.4 156 99-260 120-279 (389)
26 PF13429 TPR_15: Tetratricopep 98.3 9.7E-06 2.1E-10 71.2 11.0 127 123-255 145-273 (280)
27 PF13429 TPR_15: Tetratricopep 98.2 1.6E-05 3.4E-10 69.8 11.9 137 122-261 108-245 (280)
28 PRK12370 invasion protein regu 98.2 0.00014 2.9E-09 70.3 18.9 133 123-260 337-471 (553)
29 PRK15174 Vi polysaccharide exp 98.2 0.00019 4.2E-09 70.7 19.8 126 129-259 217-347 (656)
30 TIGR00990 3a0801s09 mitochondr 98.2 0.00036 7.9E-09 68.2 21.5 151 99-259 344-496 (615)
31 PF01535 PPR: PPR repeat; Int 98.2 1.7E-06 3.6E-11 49.3 3.0 29 126-154 2-30 (31)
32 PRK15174 Vi polysaccharide exp 98.2 0.00058 1.3E-08 67.3 22.5 150 100-259 90-241 (656)
33 PF06239 ECSIT: Evolutionarily 98.2 4E-05 8.7E-10 63.9 11.9 92 136-247 64-155 (228)
34 PF04733 Coatomer_E: Coatomer 98.1 4.5E-05 9.7E-10 67.5 12.2 132 122-259 129-265 (290)
35 PRK10049 pgaA outer membrane p 98.0 0.0011 2.3E-08 66.7 21.8 160 98-261 284-458 (765)
36 TIGR00990 3a0801s09 mitochondr 98.0 0.00064 1.4E-08 66.5 19.3 131 124-260 331-463 (615)
37 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00039 8.4E-09 63.9 16.3 121 129-257 174-295 (395)
38 PF08579 RPM2: Mitochondrial r 98.0 0.0002 4.4E-09 53.5 11.5 74 169-242 35-116 (120)
39 PRK09782 bacteriophage N4 rece 98.0 0.0012 2.6E-08 67.7 20.4 120 134-259 586-706 (987)
40 PRK12370 invasion protein regu 98.0 0.0014 3.1E-08 63.3 20.2 155 99-265 351-508 (553)
41 PF10037 MRP-S27: Mitochondria 97.9 0.00011 2.4E-09 68.0 11.3 120 123-243 65-186 (429)
42 KOG4318 Bicoid mRNA stability 97.9 0.00031 6.7E-09 68.8 14.4 90 156-249 201-290 (1088)
43 PF08579 RPM2: Mitochondrial r 97.8 0.00033 7.3E-09 52.3 10.5 78 129-207 30-116 (120)
44 KOG1840 Kinesin light chain [C 97.8 0.0034 7.3E-08 59.5 19.7 160 100-259 297-479 (508)
45 PRK11447 cellulose synthase su 97.8 0.0019 4.1E-08 67.8 19.9 138 122-262 601-743 (1157)
46 PF10037 MRP-S27: Mitochondria 97.8 0.00023 5E-09 65.8 11.1 116 146-261 50-169 (429)
47 PRK09782 bacteriophage N4 rece 97.8 0.0051 1.1E-07 63.1 21.6 150 99-259 522-672 (987)
48 PRK14574 hmsH outer membrane p 97.8 0.0026 5.7E-08 64.0 19.1 117 133-255 111-228 (822)
49 PRK10747 putative protoheme IX 97.8 0.0054 1.2E-07 56.8 19.9 157 95-259 93-292 (398)
50 PRK10049 pgaA outer membrane p 97.8 0.004 8.7E-08 62.6 20.2 150 98-257 27-177 (765)
51 TIGR00540 hemY_coli hemY prote 97.8 0.0019 4.2E-08 60.0 16.8 130 123-256 262-396 (409)
52 PRK10747 putative protoheme IX 97.7 0.0029 6.2E-08 58.6 17.7 126 123-256 262-387 (398)
53 PRK11447 cellulose synthase su 97.7 0.0021 4.6E-08 67.5 18.5 124 129-261 578-702 (1157)
54 TIGR02552 LcrH_SycD type III s 97.7 0.0025 5.4E-08 49.1 14.6 103 127-234 20-122 (135)
55 PF04733 Coatomer_E: Coatomer 97.7 0.00096 2.1E-08 59.1 13.2 159 90-258 67-229 (290)
56 PRK15179 Vi polysaccharide bio 97.7 0.0032 6.9E-08 62.2 18.0 130 124-259 86-217 (694)
57 PF05843 Suf: Suppressor of fo 97.7 0.0015 3.2E-08 57.7 14.0 132 125-261 2-138 (280)
58 PF09976 TPR_21: Tetratricopep 97.7 0.0038 8.2E-08 49.2 14.9 124 127-255 15-143 (145)
59 PRK15359 type III secretion sy 97.7 0.0035 7.5E-08 49.5 14.6 99 131-234 31-129 (144)
60 TIGR03302 OM_YfiO outer membra 97.7 0.0039 8.4E-08 53.0 16.0 159 99-261 46-234 (235)
61 cd00189 TPR Tetratricopeptide 97.6 0.0016 3.4E-08 45.2 11.5 90 130-222 6-95 (100)
62 PRK10370 formate-dependent nit 97.6 0.0045 9.7E-08 51.7 15.8 117 138-258 53-172 (198)
63 PRK15359 type III secretion sy 97.6 0.0023 5.1E-08 50.5 13.3 95 162-259 27-121 (144)
64 PRK11189 lipoprotein NlpI; Pro 97.6 0.011 2.3E-07 52.6 18.6 92 124-220 98-190 (296)
65 KOG3081 Vesicle coat complex C 97.6 0.0083 1.8E-07 51.6 16.3 149 100-259 83-236 (299)
66 COG5010 TadD Flp pilus assembl 97.6 0.0077 1.7E-07 51.5 16.0 126 125-254 101-226 (257)
67 cd00189 TPR Tetratricopeptide 97.5 0.0029 6.3E-08 43.8 11.5 95 162-259 3-97 (100)
68 TIGR02552 LcrH_SycD type III s 97.5 0.004 8.6E-08 48.0 13.1 103 156-261 13-116 (135)
69 COG2956 Predicted N-acetylgluc 97.5 0.014 3.1E-07 51.6 16.9 156 93-258 42-208 (389)
70 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0063 1.4E-07 45.3 13.2 98 127-224 5-105 (119)
71 PRK14574 hmsH outer membrane p 97.5 0.016 3.4E-07 58.5 19.5 132 123-256 326-476 (822)
72 COG4783 Putative Zn-dependent 97.4 0.018 3.8E-07 53.4 17.1 149 89-264 309-459 (484)
73 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.015 3.2E-07 43.3 13.7 101 161-261 4-107 (119)
74 KOG1840 Kinesin light chain [C 97.3 0.024 5.1E-07 53.9 17.6 161 99-259 212-396 (508)
75 PF12921 ATP13: Mitochondrial 97.3 0.0023 5E-08 49.4 9.0 81 158-238 1-96 (126)
76 COG3063 PilF Tfp pilus assembl 97.3 0.015 3.2E-07 49.1 14.2 120 134-257 45-166 (250)
77 TIGR00540 hemY_coli hemY prote 97.3 0.035 7.6E-07 51.6 18.6 130 91-227 89-219 (409)
78 PF03704 BTAD: Bacterial trans 97.3 0.011 2.4E-07 46.4 13.0 97 135-233 17-139 (146)
79 TIGR03302 OM_YfiO outer membra 97.2 0.025 5.4E-07 48.0 15.9 137 124-262 33-198 (235)
80 PF12895 Apc3: Anaphase-promot 97.2 0.00085 1.8E-08 47.6 5.7 81 172-255 2-83 (84)
81 PRK11189 lipoprotein NlpI; Pro 97.2 0.024 5.3E-07 50.2 16.3 130 125-259 65-194 (296)
82 PF12895 Apc3: Anaphase-promot 97.2 0.00079 1.7E-08 47.8 5.5 82 136-220 1-83 (84)
83 cd05804 StaR_like StaR_like; a 97.2 0.04 8.6E-07 49.7 17.9 95 161-257 116-213 (355)
84 KOG1126 DNA-binding cell divis 97.2 0.0024 5.3E-08 60.8 9.8 124 115-256 424-549 (638)
85 PRK02603 photosystem I assembl 97.2 0.042 9E-07 44.5 15.6 82 127-210 38-121 (172)
86 CHL00033 ycf3 photosystem I as 97.1 0.018 4E-07 46.4 13.3 85 134-220 45-138 (168)
87 PLN03088 SGT1, suppressor of 97.1 0.019 4.1E-07 52.4 14.4 102 134-240 12-113 (356)
88 PF12921 ATP13: Mitochondrial 97.1 0.01 2.3E-07 45.7 10.8 88 123-210 1-103 (126)
89 KOG1129 TPR repeat-containing 97.1 0.014 2.9E-07 51.8 12.6 150 100-259 237-387 (478)
90 KOG4626 O-linked N-acetylgluco 97.1 0.015 3.3E-07 55.5 13.6 127 125-257 287-415 (966)
91 PRK10370 formate-dependent nit 97.1 0.039 8.4E-07 46.0 14.9 108 123-234 72-182 (198)
92 KOG1155 Anaphase-promoting com 97.1 0.054 1.2E-06 50.2 16.4 130 115-260 367-496 (559)
93 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.026 5.5E-07 52.1 14.7 113 99-221 182-294 (395)
94 COG3071 HemY Uncharacterized e 97.0 0.046 9.9E-07 49.5 15.1 126 124-257 263-388 (400)
95 COG3063 PilF Tfp pilus assembl 97.0 0.17 3.6E-06 42.9 17.3 127 133-262 112-239 (250)
96 KOG1155 Anaphase-promoting com 96.9 0.088 1.9E-06 48.8 16.3 157 98-259 274-461 (559)
97 PF12569 NARP1: NMDA receptor- 96.9 0.071 1.5E-06 51.0 16.5 133 125-261 195-336 (517)
98 KOG3941 Intermediate in Toll s 96.9 0.029 6.4E-07 48.8 12.4 93 135-247 83-175 (406)
99 KOG2076 RNA polymerase III tra 96.9 0.047 1E-06 54.1 15.3 135 123-259 413-555 (895)
100 COG4783 Putative Zn-dependent 96.9 0.071 1.5E-06 49.5 15.6 119 134-257 316-435 (484)
101 PF14559 TPR_19: Tetratricopep 96.8 0.0065 1.4E-07 40.9 6.7 51 136-187 3-53 (68)
102 KOG1070 rRNA processing protei 96.8 0.14 3E-06 53.2 18.0 129 125-257 1531-1661(1710)
103 KOG4626 O-linked N-acetylgluco 96.7 0.056 1.2E-06 51.8 14.1 132 119-256 314-448 (966)
104 KOG1128 Uncharacterized conser 96.7 0.012 2.7E-07 56.8 9.9 71 99-183 411-481 (777)
105 KOG1126 DNA-binding cell divis 96.7 0.063 1.4E-06 51.5 14.4 120 134-258 499-619 (638)
106 PRK10153 DNA-binding transcrip 96.7 0.16 3.5E-06 48.7 17.5 136 120-259 333-482 (517)
107 cd05804 StaR_like StaR_like; a 96.7 0.086 1.9E-06 47.5 14.9 124 134-261 53-179 (355)
108 KOG1129 TPR repeat-containing 96.6 0.035 7.7E-07 49.3 11.1 127 130-261 229-355 (478)
109 CHL00033 ycf3 photosystem I as 96.6 0.08 1.7E-06 42.6 12.8 114 141-256 16-139 (168)
110 PF06239 ECSIT: Evolutionarily 96.6 0.014 3E-07 49.0 8.1 68 107-174 70-153 (228)
111 PRK02603 photosystem I assembl 96.5 0.12 2.7E-06 41.7 13.6 86 158-245 34-121 (172)
112 PF12688 TPR_5: Tetratrico pep 96.5 0.19 4.2E-06 38.3 13.7 104 134-241 11-117 (120)
113 PF09976 TPR_21: Tetratricopep 96.5 0.056 1.2E-06 42.4 11.0 88 130-220 54-143 (145)
114 PRK15179 Vi polysaccharide bio 96.5 0.14 3E-06 50.9 15.7 129 99-237 99-229 (694)
115 PLN03088 SGT1, suppressor of 96.4 0.076 1.6E-06 48.5 12.8 89 167-259 10-99 (356)
116 PF14559 TPR_19: Tetratricopep 96.4 0.024 5.1E-07 38.0 7.2 64 170-237 2-65 (68)
117 PF13432 TPR_16: Tetratricopep 96.3 0.025 5.4E-07 37.6 7.1 51 169-221 7-57 (65)
118 COG5010 TadD Flp pilus assembl 96.3 0.35 7.7E-06 41.5 15.4 126 130-259 72-197 (257)
119 PRK10803 tol-pal system protei 96.3 0.13 2.8E-06 44.9 13.0 98 125-224 144-246 (263)
120 COG3071 HemY Uncharacterized e 96.2 0.91 2E-05 41.3 20.0 159 95-259 93-292 (400)
121 KOG2003 TPR repeat-containing 96.2 0.33 7.2E-06 45.0 15.6 63 193-257 657-720 (840)
122 KOG2003 TPR repeat-containing 96.2 0.79 1.7E-05 42.7 17.8 153 99-261 537-691 (840)
123 KOG1070 rRNA processing protei 96.2 0.26 5.6E-06 51.4 16.1 130 124-255 1564-1696(1710)
124 PRK10803 tol-pal system protei 96.1 0.21 4.6E-06 43.6 13.4 103 159-261 143-248 (263)
125 KOG1914 mRNA cleavage and poly 96.0 0.52 1.1E-05 44.7 15.8 133 126-261 368-503 (656)
126 KOG2076 RNA polymerase III tra 96.0 0.13 2.8E-06 51.1 12.5 139 130-279 383-524 (895)
127 KOG0547 Translocase of outer m 96.0 0.31 6.8E-06 45.6 14.2 131 123-256 427-563 (606)
128 PRK15363 pathogenicity island 95.9 0.22 4.7E-06 39.8 11.3 86 134-223 45-131 (157)
129 PF03704 BTAD: Bacterial trans 95.8 0.32 6.9E-06 38.0 12.2 100 159-259 3-125 (146)
130 PF13432 TPR_16: Tetratricopep 95.8 0.051 1.1E-06 36.1 6.5 55 132-188 5-60 (65)
131 PF12569 NARP1: NMDA receptor- 95.8 0.61 1.3E-05 44.7 16.0 133 125-260 144-292 (517)
132 PF05843 Suf: Suppressor of fo 95.7 0.085 1.8E-06 46.5 9.4 98 160-259 2-99 (280)
133 KOG2002 TPR-containing nuclear 95.7 0.094 2E-06 52.5 10.3 127 132-259 654-798 (1018)
134 PLN02789 farnesyltranstransfer 95.7 0.99 2.2E-05 40.6 16.2 106 134-243 81-189 (320)
135 PRK15363 pathogenicity island 95.6 0.32 6.9E-06 38.8 11.5 91 167-260 43-133 (157)
136 PF13424 TPR_12: Tetratricopep 95.6 0.041 8.9E-07 38.0 5.7 64 195-258 5-74 (78)
137 KOG3060 Uncharacterized conser 95.6 1.3 2.9E-05 38.1 17.1 121 134-259 96-220 (289)
138 KOG0495 HAT repeat protein [RN 95.5 2.6 5.7E-05 41.1 19.5 124 137-265 563-686 (913)
139 PF14938 SNAP: Soluble NSF att 95.5 0.4 8.7E-06 42.2 12.8 161 98-259 47-225 (282)
140 PF13170 DUF4003: Protein of u 95.3 1.1 2.4E-05 39.8 15.0 86 140-227 78-175 (297)
141 PF04840 Vps16_C: Vps16, C-ter 95.3 0.34 7.3E-06 43.6 11.8 111 125-256 178-288 (319)
142 PF13414 TPR_11: TPR repeat; P 95.3 0.16 3.5E-06 34.0 7.6 60 159-220 3-63 (69)
143 KOG1915 Cell cycle control pro 95.2 0.67 1.5E-05 43.4 13.6 108 116-224 429-536 (677)
144 PF13424 TPR_12: Tetratricopep 95.2 0.058 1.3E-06 37.2 5.5 61 160-221 6-72 (78)
145 COG3629 DnrI DNA-binding trans 95.2 0.28 6.1E-06 43.0 10.6 78 160-239 154-236 (280)
146 KOG3081 Vesicle coat complex C 95.1 2.1 4.4E-05 37.3 18.5 123 131-259 144-271 (299)
147 KOG2002 TPR-containing nuclear 95.0 0.13 2.8E-06 51.5 9.0 120 137-259 625-745 (1018)
148 KOG3616 Selective LIM binding 95.0 0.16 3.4E-06 49.8 9.2 111 129-253 737-847 (1636)
149 PRK14720 transcript cleavage f 94.9 1.2 2.6E-05 45.4 15.6 131 122-259 29-178 (906)
150 KOG2053 Mitochondrial inherita 94.8 0.86 1.9E-05 45.6 13.8 112 125-241 42-155 (932)
151 KOG1173 Anaphase-promoting com 94.8 3.9 8.5E-05 39.1 17.8 120 135-257 391-516 (611)
152 PF13371 TPR_9: Tetratricopept 94.7 0.16 3.5E-06 34.4 6.6 52 169-222 5-56 (73)
153 KOG2376 Signal recognition par 94.7 0.42 9.1E-06 45.6 11.0 113 134-259 22-139 (652)
154 PF13371 TPR_9: Tetratricopept 94.5 0.3 6.5E-06 33.0 7.6 58 132-190 3-60 (73)
155 PLN03098 LPA1 LOW PSII ACCUMUL 94.5 0.99 2.2E-05 42.1 12.8 67 120-188 71-141 (453)
156 KOG1156 N-terminal acetyltrans 94.4 3.1 6.7E-05 40.4 16.0 83 192-276 366-454 (700)
157 PRK04841 transcriptional regul 94.3 1.7 3.6E-05 44.5 15.6 132 127-258 494-640 (903)
158 KOG1173 Anaphase-promoting com 94.3 0.69 1.5E-05 44.0 11.4 116 123-242 413-534 (611)
159 KOG1125 TPR repeat-containing 94.3 0.53 1.1E-05 44.8 10.7 113 140-256 410-524 (579)
160 PF13414 TPR_11: TPR repeat; P 94.2 0.33 7.1E-06 32.4 7.1 63 194-258 2-66 (69)
161 PF13170 DUF4003: Protein of u 94.2 3.8 8.2E-05 36.4 17.6 123 139-263 118-254 (297)
162 KOG0547 Translocase of outer m 94.2 3.7 8E-05 38.8 15.6 127 127-258 363-490 (606)
163 KOG1915 Cell cycle control pro 94.2 4.2 9E-05 38.3 15.9 117 136-260 153-274 (677)
164 PF14938 SNAP: Soluble NSF att 94.0 1.1 2.3E-05 39.4 11.8 126 134-261 45-186 (282)
165 KOG3785 Uncharacterized conser 94.0 0.91 2E-05 41.0 11.0 121 132-258 367-489 (557)
166 PF10300 DUF3808: Protein of u 94.0 3.8 8.3E-05 38.9 16.1 133 124-259 229-376 (468)
167 smart00299 CLH Clathrin heavy 94.0 1.8 3.8E-05 33.5 11.8 49 125-174 8-56 (140)
168 KOG0553 TPR repeat-containing 93.7 0.61 1.3E-05 41.0 9.3 109 115-240 84-192 (304)
169 COG4700 Uncharacterized protei 93.7 3.5 7.6E-05 34.1 17.9 140 116-257 81-220 (251)
170 KOG0553 TPR repeat-containing 93.7 1.4 3E-05 38.8 11.4 83 110-196 99-184 (304)
171 KOG3060 Uncharacterized conser 93.6 4.5 9.8E-05 35.0 17.8 134 120-260 47-184 (289)
172 PLN03098 LPA1 LOW PSII ACCUMUL 93.5 0.62 1.3E-05 43.5 9.5 66 157-224 73-141 (453)
173 COG1729 Uncharacterized protei 93.5 2.5 5.4E-05 36.7 12.6 100 161-261 144-246 (262)
174 PF12688 TPR_5: Tetratrico pep 93.4 0.71 1.5E-05 35.2 8.3 88 167-256 9-101 (120)
175 KOG4340 Uncharacterized conser 93.2 2.4 5.2E-05 37.6 12.0 121 133-255 153-335 (459)
176 COG5107 RNA14 Pre-mRNA 3'-end 93.1 2 4.3E-05 40.1 11.9 150 129-282 402-557 (660)
177 KOG0985 Vesicle coat protein c 93.0 3.4 7.3E-05 42.4 14.1 124 115-246 1124-1265(1666)
178 PF13512 TPR_18: Tetratricopep 92.9 3.6 7.7E-05 32.3 11.6 87 124-212 11-99 (142)
179 KOG1156 N-terminal acetyltrans 92.8 5.5 0.00012 38.8 14.7 131 125-261 372-513 (700)
180 PRK04841 transcriptional regul 92.7 11 0.00023 38.7 18.2 160 99-258 544-719 (903)
181 PLN02789 farnesyltranstransfer 92.5 7.8 0.00017 34.8 17.5 104 135-243 117-229 (320)
182 PRK14720 transcript cleavage f 92.4 4.7 0.0001 41.2 14.6 62 126-189 118-179 (906)
183 smart00299 CLH Clathrin heavy 92.4 2 4.4E-05 33.2 9.9 86 162-256 10-95 (140)
184 KOG2376 Signal recognition par 92.3 3.2 6.9E-05 39.9 12.4 129 125-257 377-518 (652)
185 KOG2796 Uncharacterized conser 92.1 7.6 0.00017 33.9 13.9 117 121-241 209-330 (366)
186 COG5107 RNA14 Pre-mRNA 3'-end 92.1 2 4.2E-05 40.2 10.5 94 159-256 397-492 (660)
187 KOG3941 Intermediate in Toll s 92.0 0.52 1.1E-05 41.3 6.4 69 107-175 90-174 (406)
188 KOG0985 Vesicle coat protein c 91.9 1.6 3.4E-05 44.6 10.3 62 189-252 1127-1188(1666)
189 PF04840 Vps16_C: Vps16, C-ter 91.8 3.8 8.2E-05 36.8 12.1 87 160-257 178-264 (319)
190 PRK15331 chaperone protein Sic 91.6 2.1 4.6E-05 34.4 9.1 87 134-223 47-133 (165)
191 PF00637 Clathrin: Region in C 91.4 0.072 1.6E-06 41.6 0.5 87 165-259 13-99 (143)
192 KOG2047 mRNA splicing factor [ 90.9 4.6 0.0001 39.4 12.0 114 127-243 172-294 (835)
193 COG1729 Uncharacterized protei 90.5 5.9 0.00013 34.4 11.5 96 126-224 144-244 (262)
194 PF13512 TPR_18: Tetratricopep 90.5 7 0.00015 30.7 10.9 101 159-261 11-130 (142)
195 PF13525 YfiO: Outer membrane 90.3 9 0.0002 31.8 12.4 127 134-261 15-172 (203)
196 KOG3616 Selective LIM binding 90.3 1.9 4.1E-05 42.6 9.0 80 129-220 796-875 (1636)
197 PRK15331 chaperone protein Sic 90.1 4.5 9.9E-05 32.6 9.7 86 171-259 49-134 (165)
198 COG4235 Cytochrome c biogenesi 90.0 3.8 8.3E-05 36.0 10.0 87 134-224 166-256 (287)
199 KOG1914 mRNA cleavage and poly 90.0 4.4 9.4E-05 38.7 10.8 115 141-259 348-464 (656)
200 PF13176 TPR_7: Tetratricopept 89.9 0.63 1.4E-05 27.0 3.6 23 198-220 2-24 (36)
201 KOG3617 WD40 and TPR repeat-co 89.5 6.9 0.00015 39.4 12.1 53 199-257 942-994 (1416)
202 KOG0543 FKBP-type peptidyl-pro 89.3 15 0.00032 33.9 13.5 124 134-261 218-357 (397)
203 KOG1174 Anaphase-promoting com 89.3 13 0.00029 34.5 13.0 120 134-257 344-498 (564)
204 KOG4570 Uncharacterized conser 88.6 1.5 3.3E-05 39.0 6.4 57 135-191 111-167 (418)
205 PRK10866 outer membrane biogen 88.4 15 0.00033 31.5 16.8 154 99-258 45-240 (243)
206 PF10602 RPN7: 26S proteasome 88.2 4.6 9.9E-05 32.9 8.8 100 160-260 37-143 (177)
207 PF10300 DUF3808: Protein of u 88.1 17 0.00037 34.5 13.9 131 126-259 190-334 (468)
208 KOG3785 Uncharacterized conser 88.1 8.7 0.00019 35.0 10.9 115 139-256 338-454 (557)
209 KOG4570 Uncharacterized conser 88.1 5.2 0.00011 35.7 9.4 47 210-256 115-161 (418)
210 KOG0548 Molecular co-chaperone 88.0 2.6 5.7E-05 39.9 8.0 103 133-240 11-114 (539)
211 PF10366 Vps39_1: Vacuolar sor 88.0 7.9 0.00017 28.8 9.3 48 198-245 42-94 (108)
212 KOG2047 mRNA splicing factor [ 87.4 21 0.00045 35.1 13.6 126 128-259 142-277 (835)
213 PF07035 Mic1: Colon cancer-as 87.3 14 0.00031 29.9 12.4 135 109-258 14-148 (167)
214 PF10602 RPN7: 26S proteasome 87.2 13 0.00027 30.4 10.9 89 132-222 44-140 (177)
215 PF07079 DUF1347: Protein of u 86.9 27 0.00059 32.9 13.6 42 199-240 132-177 (549)
216 KOG2053 Mitochondrial inherita 86.9 38 0.00083 34.4 21.3 106 94-207 51-156 (932)
217 PF13525 YfiO: Outer membrane 86.6 8.4 0.00018 31.9 9.8 92 169-261 15-121 (203)
218 COG4235 Cytochrome c biogenesi 86.6 22 0.00048 31.4 12.9 99 157-259 154-256 (287)
219 COG4105 ComL DNA uptake lipopr 86.5 21 0.00045 30.9 15.7 163 97-261 45-235 (254)
220 COG3629 DnrI DNA-binding trans 86.5 12 0.00026 32.9 10.9 79 124-204 153-236 (280)
221 KOG1125 TPR repeat-containing 86.5 7.9 0.00017 37.1 10.3 126 122-252 428-564 (579)
222 PRK10153 DNA-binding transcrip 86.4 16 0.00035 35.2 12.7 66 157-225 418-483 (517)
223 KOG4340 Uncharacterized conser 86.3 22 0.00047 31.7 12.2 142 120-265 39-213 (459)
224 PF07163 Pex26: Pex26 protein; 85.8 24 0.00052 31.1 12.9 88 128-218 87-181 (309)
225 PF13428 TPR_14: Tetratricopep 85.5 4.4 9.5E-05 24.5 5.7 22 166-187 8-29 (44)
226 PF13929 mRNA_stabil: mRNA sta 85.5 25 0.00054 31.0 12.8 66 155-220 198-263 (292)
227 KOG1585 Protein required for f 85.4 24 0.00051 30.6 12.0 145 125-270 92-277 (308)
228 PRK10866 outer membrane biogen 85.1 23 0.00051 30.3 15.1 126 134-262 42-207 (243)
229 PF13176 TPR_7: Tetratricopept 84.9 2 4.4E-05 24.8 3.8 26 232-257 1-26 (36)
230 PF04184 ST7: ST7 protein; In 84.9 20 0.00043 34.1 11.9 78 133-210 268-346 (539)
231 KOG1538 Uncharacterized conser 84.1 46 0.001 32.9 14.4 117 131-259 710-846 (1081)
232 PF13374 TPR_10: Tetratricopep 84.0 3.1 6.6E-05 24.2 4.5 26 232-257 4-29 (42)
233 KOG4648 Uncharacterized conser 84.0 13 0.00029 33.7 10.0 85 113-220 98-183 (536)
234 PF13428 TPR_14: Tetratricopep 83.4 2.8 6E-05 25.4 4.1 28 197-224 3-30 (44)
235 PF13374 TPR_10: Tetratricopep 82.8 3.4 7.4E-05 24.0 4.3 28 195-222 2-29 (42)
236 PF00637 Clathrin: Region in C 82.7 0.33 7.2E-06 37.7 -0.4 54 130-183 13-66 (143)
237 KOG2796 Uncharacterized conser 82.2 27 0.00059 30.6 10.8 128 129-259 182-315 (366)
238 KOG3617 WD40 and TPR repeat-co 81.3 16 0.00034 37.0 10.2 56 198-256 829-884 (1416)
239 PF04053 Coatomer_WDAD: Coatom 81.1 18 0.00039 34.1 10.4 116 124-255 295-427 (443)
240 PF04184 ST7: ST7 protein; In 80.9 40 0.00088 32.1 12.3 81 165-245 265-346 (539)
241 PF13762 MNE1: Mitochondrial s 80.9 25 0.00055 27.7 11.3 98 150-247 28-132 (145)
242 TIGR02508 type_III_yscG type I 80.9 16 0.00034 27.0 7.7 86 139-233 20-105 (115)
243 PF09205 DUF1955: Domain of un 80.4 19 0.00041 28.2 8.4 67 159-227 86-152 (161)
244 KOG0495 HAT repeat protein [RN 80.1 66 0.0014 31.9 19.6 136 120-260 647-783 (913)
245 PF13929 mRNA_stabil: mRNA sta 79.3 32 0.0007 30.4 10.6 117 137-253 141-261 (292)
246 KOG0548 Molecular co-chaperone 79.3 12 0.00027 35.5 8.5 99 99-205 15-114 (539)
247 PF10579 Rapsyn_N: Rapsyn N-te 79.2 5.6 0.00012 27.9 4.7 47 171-217 18-65 (80)
248 cd00923 Cyt_c_Oxidase_Va Cytoc 79.1 22 0.00047 26.1 7.9 59 107-167 25-84 (103)
249 KOG4555 TPR repeat-containing 78.6 30 0.00064 27.1 10.3 93 133-227 52-147 (175)
250 PF02284 COX5A: Cytochrome c o 78.5 11 0.00024 27.9 6.3 47 177-224 28-74 (108)
251 KOG1127 TPR repeat-containing 77.8 30 0.00064 35.8 11.0 124 134-260 572-701 (1238)
252 PF13431 TPR_17: Tetratricopep 77.5 2.9 6.3E-05 23.9 2.6 25 191-215 9-33 (34)
253 COG4455 ImpE Protein of avirul 77.3 20 0.00043 30.5 8.3 78 126-204 3-81 (273)
254 KOG1128 Uncharacterized conser 77.3 8 0.00017 38.2 6.8 85 134-222 529-614 (777)
255 cd00923 Cyt_c_Oxidase_Va Cytoc 77.3 13 0.00028 27.2 6.3 63 174-238 22-84 (103)
256 PF11848 DUF3368: Domain of un 77.2 10 0.00023 23.6 5.2 33 206-238 13-45 (48)
257 KOG1127 TPR repeat-containing 76.8 74 0.0016 33.1 13.4 118 134-257 502-657 (1238)
258 KOG0991 Replication factor C, 76.4 50 0.0011 28.6 13.2 129 129-264 164-303 (333)
259 PF11663 Toxin_YhaV: Toxin wit 75.9 2.7 5.9E-05 32.6 2.7 34 134-169 105-138 (140)
260 KOG1174 Anaphase-promoting com 75.6 71 0.0015 29.9 14.5 81 173-257 314-395 (564)
261 COG0457 NrfG FOG: TPR repeat [ 75.5 36 0.00078 26.5 17.2 137 123-260 94-232 (291)
262 PF04053 Coatomer_WDAD: Coatom 75.4 56 0.0012 30.8 11.9 85 120-220 343-427 (443)
263 PF11848 DUF3368: Domain of un 75.2 13 0.00028 23.2 5.3 35 133-167 11-45 (48)
264 PF00515 TPR_1: Tetratricopept 75.0 9.9 0.00021 21.1 4.4 26 197-222 3-28 (34)
265 PF13281 DUF4071: Domain of un 74.2 73 0.0016 29.4 16.1 32 228-259 303-334 (374)
266 KOG1498 26S proteasome regulat 73.6 49 0.0011 30.6 10.4 103 129-238 136-256 (439)
267 TIGR03504 FimV_Cterm FimV C-te 73.5 8.4 0.00018 23.7 4.0 25 201-225 5-29 (44)
268 COG2178 Predicted RNA-binding 73.3 53 0.0011 27.3 11.5 19 242-260 133-151 (204)
269 PRK10564 maltose regulon perip 73.2 8.7 0.00019 34.0 5.5 43 192-234 254-296 (303)
270 PF11846 DUF3366: Domain of un 72.9 21 0.00046 29.2 7.6 55 207-261 120-175 (193)
271 COG4455 ImpE Protein of avirul 72.7 33 0.00071 29.3 8.4 46 123-168 34-81 (273)
272 PF11207 DUF2989: Protein of u 72.3 48 0.001 27.7 9.4 79 169-250 117-198 (203)
273 KOG4162 Predicted calmodulin-b 72.0 55 0.0012 32.8 11.0 103 154-258 318-422 (799)
274 COG3118 Thioredoxin domain-con 71.7 73 0.0016 28.3 12.0 112 129-244 173-286 (304)
275 PF09205 DUF1955: Domain of un 71.6 47 0.001 26.0 13.5 65 126-191 88-152 (161)
276 PF11207 DUF2989: Protein of u 71.6 54 0.0012 27.4 9.5 80 134-215 117-198 (203)
277 PF14689 SPOB_a: Sensor_kinase 70.3 12 0.00026 24.7 4.5 26 232-257 25-50 (62)
278 KOG2041 WD40 repeat protein [G 70.3 42 0.00091 33.5 9.7 29 192-220 849-877 (1189)
279 PF13281 DUF4071: Domain of un 70.2 74 0.0016 29.3 11.0 31 208-238 195-225 (374)
280 KOG2280 Vacuolar assembly/sort 70.2 45 0.00097 33.4 9.9 113 122-254 682-794 (829)
281 COG5108 RPO41 Mitochondrial DN 69.6 33 0.00073 33.9 8.8 47 129-175 33-81 (1117)
282 PF13174 TPR_6: Tetratricopept 69.5 6.8 0.00015 21.4 2.8 26 236-261 6-31 (33)
283 PHA02940 hypothetical protein; 69.2 65 0.0014 27.8 9.5 95 164-280 147-243 (315)
284 PF14689 SPOB_a: Sensor_kinase 68.6 8.1 0.00017 25.6 3.4 46 175-223 6-51 (62)
285 cd00280 TRFH Telomeric Repeat 68.5 17 0.00037 29.9 5.8 38 129-169 116-153 (200)
286 KOG0543 FKBP-type peptidyl-pro 67.6 1E+02 0.0023 28.5 11.2 97 124-223 257-354 (397)
287 PF02284 COX5A: Cytochrome c o 66.3 51 0.0011 24.4 9.6 43 110-152 31-73 (108)
288 PF10579 Rapsyn_N: Rapsyn N-te 65.9 23 0.0005 24.8 5.3 47 207-253 18-66 (80)
289 PF07721 TPR_4: Tetratricopept 65.7 11 0.00025 19.9 3.1 16 203-218 9-24 (26)
290 KOG2908 26S proteasome regulat 65.7 76 0.0016 28.8 9.7 60 128-187 79-143 (380)
291 COG5187 RPN7 26S proteasome re 65.5 71 0.0015 28.5 9.3 103 158-264 114-226 (412)
292 KOG2114 Vacuolar assembly/sort 65.3 89 0.0019 31.8 11.0 83 134-225 378-460 (933)
293 PF13181 TPR_8: Tetratricopept 64.8 19 0.00042 19.7 4.2 25 197-221 3-27 (34)
294 PF09613 HrpB1_HrpK: Bacterial 64.0 75 0.0016 25.5 10.5 91 133-231 19-113 (160)
295 TIGR02561 HrpB1_HrpK type III 64.0 72 0.0016 25.3 10.2 90 137-232 23-114 (153)
296 KOG4162 Predicted calmodulin-b 63.4 1.7E+02 0.0037 29.5 15.2 83 178-262 463-545 (799)
297 PF11846 DUF3366: Domain of un 63.1 49 0.0011 27.0 7.9 53 136-188 120-173 (193)
298 PF10475 DUF2450: Protein of u 62.6 1.1E+02 0.0024 27.0 10.9 110 129-250 103-217 (291)
299 KOG0276 Vesicle coat complex C 62.4 1.2E+02 0.0026 29.8 11.0 15 239-253 730-744 (794)
300 KOG0624 dsRNA-activated protei 62.3 1.3E+02 0.0028 27.6 15.1 117 134-253 116-246 (504)
301 COG4649 Uncharacterized protei 62.0 90 0.0019 25.7 13.9 144 115-259 50-196 (221)
302 COG5159 RPN6 26S proteasome re 61.8 1.2E+02 0.0026 27.1 11.1 126 134-259 13-154 (421)
303 PF11817 Foie-gras_1: Foie gra 61.4 71 0.0015 27.3 8.9 59 198-256 181-244 (247)
304 PF00515 TPR_1: Tetratricopept 60.8 26 0.00057 19.2 4.5 29 231-259 2-30 (34)
305 PRK15180 Vi polysaccharide bio 60.4 64 0.0014 30.8 8.6 115 137-257 302-418 (831)
306 PF07719 TPR_2: Tetratricopept 60.0 27 0.00057 19.0 4.4 25 198-222 4-28 (34)
307 COG0735 Fur Fe2+/Zn2+ uptake r 59.7 75 0.0016 24.9 8.0 46 199-244 24-69 (145)
308 COG0457 NrfG FOG: TPR repeat [ 59.7 79 0.0017 24.4 17.3 125 133-259 139-265 (291)
309 PF07079 DUF1347: Protein of u 59.1 1.7E+02 0.0036 27.9 16.0 129 127-257 131-325 (549)
310 TIGR02561 HrpB1_HrpK type III 59.0 90 0.002 24.8 11.0 67 99-172 23-89 (153)
311 COG3898 Uncharacterized membra 58.8 1.6E+02 0.0034 27.5 16.9 109 161-271 190-304 (531)
312 TIGR03504 FimV_Cterm FimV C-te 58.7 20 0.00044 22.0 3.6 25 165-189 5-29 (44)
313 KOG4077 Cytochrome c oxidase, 58.4 50 0.0011 25.6 6.3 45 179-224 69-113 (149)
314 PF08870 DUF1832: Domain of un 57.7 36 0.00079 25.6 5.6 89 141-244 6-96 (113)
315 KOG1538 Uncharacterized conser 57.7 25 0.00054 34.7 5.6 93 122-220 554-657 (1081)
316 PRK11906 transcriptional regul 57.1 1.8E+02 0.0038 27.6 12.4 113 139-255 273-397 (458)
317 PF07035 Mic1: Colon cancer-as 56.7 1E+02 0.0023 24.8 15.3 101 144-256 14-115 (167)
318 PRK10564 maltose regulon perip 56.6 26 0.00055 31.2 5.2 35 128-162 261-295 (303)
319 COG4105 ComL DNA uptake lipopr 56.4 1.3E+02 0.0029 26.0 12.0 83 122-206 33-117 (254)
320 TIGR03581 EF_0839 conserved hy 55.5 30 0.00066 29.2 5.2 84 139-222 136-235 (236)
321 COG3947 Response regulator con 55.2 98 0.0021 27.6 8.4 53 167-221 287-339 (361)
322 PF13762 MNE1: Mitochondrial s 55.0 1E+02 0.0022 24.3 9.3 84 126-210 41-130 (145)
323 COG1747 Uncharacterized N-term 54.8 2.1E+02 0.0045 27.7 14.1 130 123-257 65-232 (711)
324 COG2178 Predicted RNA-binding 54.7 91 0.002 25.9 7.7 91 134-224 39-150 (204)
325 KOG0550 Molecular chaperone (D 54.5 1.8E+02 0.0038 27.3 10.3 96 110-221 247-347 (486)
326 PRK09857 putative transposase; 54.5 95 0.0021 27.5 8.6 88 140-230 188-275 (292)
327 PF08311 Mad3_BUB1_I: Mad3/BUB 54.5 31 0.00067 26.3 4.9 42 213-254 81-123 (126)
328 KOG0687 26S proteasome regulat 54.1 1.4E+02 0.003 27.1 9.3 89 132-222 112-208 (393)
329 PF11838 ERAP1_C: ERAP1-like C 53.8 1.5E+02 0.0033 25.9 11.5 120 129-254 134-261 (324)
330 PRK14958 DNA polymerase III su 53.7 2.1E+02 0.0046 27.5 12.6 80 149-231 190-281 (509)
331 COG3118 Thioredoxin domain-con 53.5 1.6E+02 0.0036 26.1 15.2 121 134-259 144-265 (304)
332 KOG1130 Predicted G-alpha GTPa 50.8 1.5E+02 0.0033 27.8 9.3 124 134-257 205-342 (639)
333 KOG2114 Vacuolar assembly/sort 50.8 2.3E+02 0.005 29.0 11.1 119 124-255 334-456 (933)
334 PF14669 Asp_Glu_race_2: Putat 50.7 45 0.00098 27.8 5.4 59 162-220 135-206 (233)
335 KOG2280 Vacuolar assembly/sort 49.6 65 0.0014 32.3 7.1 87 159-256 684-770 (829)
336 cd08819 CARD_MDA5_2 Caspase ac 49.6 95 0.0021 22.2 6.9 65 179-250 22-86 (88)
337 PF11663 Toxin_YhaV: Toxin wit 49.5 21 0.00045 27.8 3.1 31 172-205 108-138 (140)
338 PF07163 Pex26: Pex26 protein; 49.4 1.9E+02 0.0041 25.7 10.2 90 163-253 87-181 (309)
339 KOG1147 Glutamyl-tRNA syntheta 49.0 26 0.00056 33.7 4.2 39 241-281 314-352 (712)
340 TIGR03184 DNA_S_dndE DNA sulfu 48.9 55 0.0012 24.3 5.2 90 141-244 5-98 (105)
341 COG4700 Uncharacterized protei 48.8 1.6E+02 0.0035 24.6 14.9 104 154-260 84-190 (251)
342 PRK13342 recombination factor 48.7 2.3E+02 0.0049 26.3 11.8 104 140-245 153-280 (413)
343 smart00028 TPR Tetratricopepti 48.4 34 0.00075 17.1 3.3 26 197-222 3-28 (34)
344 PF11817 Foie-gras_1: Foie gra 47.2 1.8E+02 0.0039 24.8 9.1 56 166-221 185-244 (247)
345 PRK08691 DNA polymerase III su 47.1 3.1E+02 0.0068 27.6 11.5 88 141-231 181-281 (709)
346 PF02607 B12-binding_2: B12 bi 47.1 46 0.001 22.6 4.5 38 207-244 13-50 (79)
347 PF09613 HrpB1_HrpK: Bacterial 46.3 1.5E+02 0.0033 23.7 11.9 106 99-216 23-130 (160)
348 KOG0276 Vesicle coat complex C 45.5 1.3E+02 0.0028 29.6 8.3 79 115-221 669-747 (794)
349 PRK14135 recX recombination re 45.4 2E+02 0.0043 24.7 11.1 113 140-256 88-202 (263)
350 PF13934 ELYS: Nuclear pore co 45.3 1.9E+02 0.0041 24.5 10.0 104 126-241 78-183 (226)
351 cd07153 Fur_like Ferric uptake 45.1 67 0.0015 23.6 5.4 34 212-245 17-50 (116)
352 PLN03025 replication factor C 44.3 2.3E+02 0.005 25.2 12.6 92 141-235 161-264 (319)
353 smart00544 MA3 Domain in DAP-5 44.2 1.2E+02 0.0027 22.0 10.9 96 129-240 7-105 (113)
354 PRK11639 zinc uptake transcrip 44.2 1.7E+02 0.0036 23.5 8.0 64 148-214 15-79 (169)
355 PRK11906 transcriptional regul 44.2 2.9E+02 0.0062 26.3 13.0 111 139-253 319-430 (458)
356 PF09477 Type_III_YscG: Bacter 43.4 1.4E+02 0.003 22.4 8.8 79 139-225 21-99 (116)
357 COG2987 HutU Urocanate hydrata 43.3 19 0.00041 33.7 2.4 68 172-253 216-288 (561)
358 PRK14951 DNA polymerase III su 42.5 3.5E+02 0.0077 26.8 11.5 88 141-231 186-286 (618)
359 smart00804 TAP_C C-terminal do 41.9 25 0.00055 23.4 2.3 22 208-229 38-60 (63)
360 KOG4555 TPR repeat-containing 41.8 1.7E+02 0.0037 23.0 10.8 68 123-190 76-146 (175)
361 COG5210 GTPase-activating prot 41.6 2.8E+02 0.006 26.5 10.2 44 146-189 364-407 (496)
362 PF04090 RNA_pol_I_TF: RNA pol 41.5 2.1E+02 0.0045 23.9 9.9 28 126-153 43-70 (199)
363 cd08819 CARD_MDA5_2 Caspase ac 41.5 1.3E+02 0.0028 21.5 7.2 68 142-216 20-87 (88)
364 KOG1464 COP9 signalosome, subu 41.1 1.4E+02 0.003 26.4 7.2 154 103-257 44-218 (440)
365 cd00280 TRFH Telomeric Repeat 41.1 1E+02 0.0022 25.5 6.0 67 175-244 85-157 (200)
366 PF09454 Vps23_core: Vps23 cor 40.4 81 0.0018 21.1 4.6 50 122-172 6-55 (65)
367 PF01475 FUR: Ferric uptake re 40.3 63 0.0014 24.0 4.6 48 199-246 11-58 (120)
368 PF10475 DUF2450: Protein of u 39.6 1.7E+02 0.0036 25.8 7.9 87 125-216 128-218 (291)
369 KOG1130 Predicted G-alpha GTPa 39.3 43 0.00093 31.3 4.0 47 169-217 27-77 (639)
370 COG3947 Response regulator con 39.1 2.9E+02 0.0063 24.8 10.3 102 155-257 223-340 (361)
371 PF09670 Cas_Cas02710: CRISPR- 38.7 3.2E+02 0.0069 25.2 11.5 54 134-188 141-198 (379)
372 COG4649 Uncharacterized protei 38.6 2.3E+02 0.0049 23.5 15.1 130 99-231 71-203 (221)
373 KOG0687 26S proteasome regulat 38.4 3.1E+02 0.0067 25.0 10.0 99 161-262 106-213 (393)
374 PF10366 Vps39_1: Vacuolar sor 38.3 1.3E+02 0.0027 22.3 5.8 27 161-187 41-67 (108)
375 PF02847 MA3: MA3 domain; Int 37.4 1.6E+02 0.0035 21.4 8.9 63 128-192 6-70 (113)
376 PF08631 SPO22: Meiosis protei 37.0 2.8E+02 0.0061 24.1 13.6 152 99-257 6-184 (278)
377 cd08780 Death_TRADD Death Doma 36.9 1.6E+02 0.0034 21.2 5.9 56 196-254 33-89 (90)
378 PF11768 DUF3312: Protein of u 36.9 4.1E+02 0.0088 25.9 10.9 96 129-224 413-523 (545)
379 COG5108 RPO41 Mitochondrial DN 36.8 2.1E+02 0.0045 28.7 8.2 48 164-211 33-81 (1117)
380 COG4003 Uncharacterized protei 36.5 67 0.0014 22.7 3.7 29 129-157 36-65 (98)
381 PF02847 MA3: MA3 domain; Int 36.5 48 0.001 24.3 3.4 62 163-227 6-69 (113)
382 KOG1524 WD40 repeat-containing 36.2 4.2E+02 0.0091 25.8 10.4 86 122-220 571-669 (737)
383 COG2987 HutU Urocanate hydrata 35.3 1.2E+02 0.0025 28.8 6.1 44 138-181 239-287 (561)
384 PRK10292 hypothetical protein; 34.9 1.4E+02 0.003 20.0 5.3 39 219-257 23-61 (69)
385 PRK13341 recombination factor 34.4 5.1E+02 0.011 26.3 11.5 102 141-245 171-308 (725)
386 PRK07764 DNA polymerase III su 34.3 3.6E+02 0.0078 27.8 10.0 85 141-229 182-281 (824)
387 PRK14963 DNA polymerase III su 34.0 4.4E+02 0.0095 25.4 11.9 89 140-231 177-277 (504)
388 PF09868 DUF2095: Uncharacteri 34.0 68 0.0015 24.2 3.6 25 130-154 67-91 (128)
389 COG4003 Uncharacterized protei 33.9 76 0.0017 22.4 3.7 26 200-225 36-61 (98)
390 PF11123 DNA_Packaging_2: DNA 33.7 1.2E+02 0.0026 20.9 4.5 33 174-208 12-44 (82)
391 KOG4567 GTPase-activating prot 33.5 3.6E+02 0.0079 24.3 10.7 58 144-207 263-320 (370)
392 KOG4077 Cytochrome c oxidase, 33.5 2.3E+02 0.005 22.0 7.1 59 142-202 67-125 (149)
393 PF09454 Vps23_core: Vps23 cor 33.4 1E+02 0.0022 20.6 4.2 44 198-242 11-54 (65)
394 PRK07003 DNA polymerase III su 33.2 5.6E+02 0.012 26.4 11.9 87 140-229 180-279 (830)
395 KOG2041 WD40 repeat protein [G 32.4 1.4E+02 0.003 30.1 6.4 114 137-253 747-875 (1189)
396 PF10345 Cohesin_load: Cohesin 32.4 4.9E+02 0.011 25.5 14.3 129 129-258 105-253 (608)
397 smart00386 HAT HAT (Half-A-TPR 32.3 81 0.0018 16.4 4.1 28 173-202 1-28 (33)
398 KOG2610 Uncharacterized conser 31.9 4.1E+02 0.0089 24.4 11.6 137 123-261 136-279 (491)
399 KOG2610 Uncharacterized conser 31.7 4.1E+02 0.0089 24.4 10.9 85 135-220 186-272 (491)
400 TIGR02508 type_III_yscG type I 31.7 2.2E+02 0.0047 21.2 7.7 78 174-259 20-97 (115)
401 PRK15180 Vi polysaccharide bio 31.5 1.9E+02 0.0041 27.8 6.9 56 135-191 334-389 (831)
402 PF09868 DUF2095: Uncharacteri 31.3 80 0.0017 23.8 3.6 26 200-225 66-91 (128)
403 COG5187 RPN7 26S proteasome re 31.2 3.9E+02 0.0085 24.0 10.9 97 126-222 117-219 (412)
404 cd07153 Fur_like Ferric uptake 31.1 1.2E+02 0.0026 22.2 4.8 47 130-176 6-52 (116)
405 PF13934 ELYS: Nuclear pore co 31.1 1.2E+02 0.0025 25.8 5.2 83 119-208 101-185 (226)
406 PF00531 Death: Death domain; 30.9 88 0.0019 21.2 3.8 40 141-182 41-80 (83)
407 PF08311 Mad3_BUB1_I: Mad3/BUB 30.8 2.4E+02 0.0052 21.4 8.7 59 160-220 66-124 (126)
408 KOG0991 Replication factor C, 30.7 3.6E+02 0.0079 23.5 9.5 48 120-169 235-282 (333)
409 KOG2063 Vacuolar assembly/sort 30.7 4.9E+02 0.011 27.0 10.2 110 126-243 506-639 (877)
410 PRK05414 urocanate hydratase; 30.4 38 0.00083 32.3 2.3 68 174-255 218-290 (556)
411 TIGR01228 hutU urocanate hydra 30.1 39 0.00085 32.1 2.3 45 209-253 230-279 (545)
412 KOG3364 Membrane protein invol 29.9 2.8E+02 0.006 21.9 6.7 52 136-189 47-101 (149)
413 KOG3280 Mitochondrial/chloropl 29.8 1.4E+02 0.0031 23.9 5.0 67 212-279 49-117 (171)
414 COG1775 HgdB Benzoyl-CoA reduc 29.5 2.3E+02 0.0049 26.1 6.9 28 159-186 159-186 (379)
415 smart00777 Mad3_BUB1_I Mad3/BU 29.3 2.6E+02 0.0056 21.4 7.3 43 212-254 80-123 (125)
416 KOG2908 26S proteasome regulat 29.0 4.5E+02 0.0098 24.0 10.8 40 120-159 109-155 (380)
417 KOG0403 Neoplastic transformat 28.7 1.7E+02 0.0037 27.8 6.1 74 163-242 513-586 (645)
418 cd07229 Pat_TGL3_like Triacylg 27.8 4E+02 0.0087 24.8 8.4 100 145-250 100-206 (391)
419 PF09797 NatB_MDM20: N-acetylt 27.8 1.7E+02 0.0038 26.5 6.2 73 161-235 182-257 (365)
420 PF10363 DUF2435: Protein of u 27.5 1.2E+02 0.0026 21.7 4.1 46 140-189 41-86 (92)
421 PRK09462 fur ferric uptake reg 27.0 3E+02 0.0065 21.3 7.5 63 148-212 6-69 (148)
422 KOG0403 Neoplastic transformat 26.7 3.9E+02 0.0083 25.6 7.9 102 129-245 514-617 (645)
423 COG2909 MalT ATP-dependent tra 26.4 7.4E+02 0.016 25.7 14.8 138 121-261 494-649 (894)
424 cd08326 CARD_CASP9 Caspase act 26.3 2.4E+02 0.0051 19.9 5.7 15 174-188 45-59 (84)
425 COG3898 Uncharacterized membra 25.8 5.6E+02 0.012 24.1 14.6 80 172-257 133-215 (531)
426 PF02607 B12-binding_2: B12 bi 25.6 1E+02 0.0022 20.8 3.4 40 134-173 11-50 (79)
427 PF05944 Phage_term_smal: Phag 25.5 2E+02 0.0043 22.3 5.1 26 200-225 53-78 (132)
428 COG1775 HgdB Benzoyl-CoA reduc 25.1 3.3E+02 0.0071 25.1 7.1 64 124-187 159-223 (379)
429 PF09670 Cas_Cas02710: CRISPR- 25.0 3.6E+02 0.0078 24.8 7.7 52 171-224 143-198 (379)
430 PF11838 ERAP1_C: ERAP1-like C 24.9 4.6E+02 0.01 22.8 10.3 91 166-259 136-230 (324)
431 cd00045 DED The Death Effector 24.8 1.7E+02 0.0037 20.1 4.3 39 210-250 35-74 (77)
432 PHA02875 ankyrin repeat protei 24.8 2.4E+02 0.0052 25.8 6.6 13 146-158 117-129 (413)
433 PF08542 Rep_fac_C: Replicatio 24.7 1.5E+02 0.0033 20.4 4.2 34 138-172 18-51 (89)
434 KOG3807 Predicted membrane pro 24.7 5.4E+02 0.012 23.6 8.3 105 140-256 232-337 (556)
435 KOG4567 GTPase-activating prot 24.4 4.5E+02 0.0098 23.8 7.6 59 179-243 263-321 (370)
436 PF04124 Dor1: Dor1-like famil 24.4 1.7E+02 0.0037 26.4 5.4 34 163-196 110-143 (338)
437 smart00005 DEATH DEATH domain, 24.2 2.4E+02 0.0053 19.3 5.5 41 210-252 45-85 (88)
438 smart00164 TBC Domain in Tre-2 24.0 2.5E+02 0.0055 22.5 6.0 82 139-225 108-197 (199)
439 PF01475 FUR: Ferric uptake re 23.0 1.4E+02 0.0031 22.1 4.0 47 129-175 12-58 (120)
440 KOG1920 IkappaB kinase complex 22.9 9.8E+02 0.021 25.8 13.2 52 202-256 972-1025(1265)
441 KOG1166 Mitotic checkpoint ser 22.4 3.6E+02 0.0078 28.4 7.6 57 136-192 90-147 (974)
442 PF12796 Ank_2: Ankyrin repeat 22.3 1.4E+02 0.0031 20.2 3.7 10 219-228 76-85 (89)
443 PF08631 SPO22: Meiosis protei 22.3 5.2E+02 0.011 22.4 18.8 102 125-231 85-193 (278)
444 PF10255 Paf67: RNA polymerase 22.3 6.5E+02 0.014 23.5 9.0 99 123-221 74-190 (404)
445 PF12862 Apc5: Anaphase-promot 22.1 2.9E+02 0.0063 19.4 7.8 55 134-188 8-70 (94)
446 KOG3364 Membrane protein invol 22.1 2.7E+02 0.0059 21.9 5.2 68 156-224 29-100 (149)
447 smart00777 Mad3_BUB1_I Mad3/BU 21.9 2.1E+02 0.0046 21.9 4.7 44 176-219 80-123 (125)
448 KOG1046 Puromycin-sensitive am 21.7 9.2E+02 0.02 25.1 13.3 121 126-254 673-800 (882)
449 PRK14970 DNA polymerase III su 21.7 6E+02 0.013 22.9 12.1 83 150-237 180-275 (367)
450 PHA02875 ankyrin repeat protei 21.5 2E+02 0.0042 26.4 5.3 126 117-254 23-156 (413)
451 KOG4648 Uncharacterized conser 21.4 3.1E+02 0.0068 25.2 6.2 82 169-260 107-188 (536)
452 PF14840 DNA_pol3_delt_C: Proc 21.1 91 0.002 23.8 2.5 27 207-233 9-35 (125)
453 PF07304 SRA1: Steroid recepto 21.0 2E+02 0.0044 22.9 4.6 17 170-186 101-117 (157)
454 KOG1873 Ubiquitin-specific pro 21.0 3.1E+02 0.0067 27.8 6.5 65 158-225 213-281 (877)
455 PF11740 KfrA_N: Plasmid repli 20.8 3.5E+02 0.0076 19.9 6.1 45 213-261 5-49 (120)
456 KOG1147 Glutamyl-tRNA syntheta 20.8 1.2E+02 0.0026 29.4 3.6 70 146-223 255-331 (712)
457 cd01670 Death Death Domain: a 20.7 2.5E+02 0.0054 18.7 4.5 40 211-252 38-77 (79)
458 KOG0550 Molecular chaperone (D 20.6 5.1E+02 0.011 24.4 7.5 84 170-257 260-348 (486)
459 PF07218 RAP1: Rhoptry-associa 20.6 8.2E+02 0.018 24.0 10.1 119 133-262 587-761 (782)
460 TIGR03362 VI_chp_7 type VI sec 20.4 4.2E+02 0.0092 23.6 6.9 59 202-260 220-280 (301)
461 PRK14971 DNA polymerase III su 20.2 8.5E+02 0.018 24.1 12.5 77 151-230 194-282 (614)
462 PF00627 UBA: UBA/TS-N domain; 20.2 1.9E+02 0.0041 16.5 4.1 7 210-216 29-35 (37)
463 cd08316 Death_FAS_TNFRSF6 Deat 20.1 3.2E+02 0.0069 19.8 5.1 44 212-257 50-93 (97)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=235.38 Aligned_cols=159 Identities=16% Similarity=0.148 Sum_probs=132.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|.++|+.|. .+|+++||.+|.+|+++|++++|+++|++|.+.|+.||.+||++||.+|++.|++++|
T Consensus 272 ~g~~~~A~~vf~~m~-------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 272 CGDIEDARCVFDGMP-------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred CCCHHHHHHHHHhCC-------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 456667777777653 4677788888888888888888888888888778888888887777777777777777
Q ss_pred HHHHHHHHHcCCCC------------------------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 179 ESLWNMILHTQTRS------------------------------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 179 ~~l~~~m~~~~~~~------------------------------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+++.+|.+.|..+ +|..+||+||.+|+++|+.++|+++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 77777776666432 277889999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
|.+||++||++|++.|.+++|.++|+.|.+++++.+
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p 460 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999998877655
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=1.5e-26 Score=232.85 Aligned_cols=158 Identities=15% Similarity=0.129 Sum_probs=136.6
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
|..++|..+|+.|. ..+..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.|++++|.
T Consensus 628 G~~deAl~lf~eM~---~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~ 704 (1060)
T PLN03218 628 GDWDFALSIYDDMK---KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704 (1060)
T ss_pred CCHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 44555666665553 456778899999999999999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++|++|.+.|..| |..+||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 705 ~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 705 ELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999998888876 889999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC
Q 023326 260 WK 261 (284)
Q Consensus 260 ~~ 261 (284)
..
T Consensus 784 Gi 785 (1060)
T PLN03218 784 GI 785 (1060)
T ss_pred CC
Confidence 43
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.95 E-value=2.9e-26 Score=230.72 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=126.6
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
|..++|.++|+.|. ..+..|+..+|+.+|.+|++.|++++|+++|++|.+.|+.||.+||++||++|++.|++++|.
T Consensus 593 G~ldeA~elf~~M~---e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 593 GQVDRAKEVYQMIH---EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred CCHHHHHHHHHHHH---HcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 44455555655553 355667888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++|++|.+.|+.| +..+||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.
T Consensus 670 ~l~~eM~k~G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 670 EILQDARKQGIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 8888888888775 888888888888888888888888888888888888888888888888888888888888888765
Q ss_pred c
Q 023326 260 W 260 (284)
Q Consensus 260 ~ 260 (284)
.
T Consensus 749 G 749 (1060)
T PLN03218 749 G 749 (1060)
T ss_pred C
Confidence 3
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.93 E-value=2.1e-24 Score=212.33 Aligned_cols=136 Identities=16% Similarity=0.204 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-----------------------------------HHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGT-----------------------------------YDT 164 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t-----------------------------------y~~ 164 (284)
..||+++|+.+|.+|++.|++++|+++|++|.+.|+.||..| ||+
T Consensus 185 ~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 358999999999999999999999999999988777666544 466
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
||++|++.|++++|.++|++|. ++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 7777888888888888888774 23888999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHHhc
Q 023326 245 QDDKQKLVLKKYLSKW 260 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~~ 260 (284)
.+++|.+++++|.+..
T Consensus 340 ~~~~a~~i~~~m~~~g 355 (697)
T PLN03081 340 LLEHAKQAHAGLIRTG 355 (697)
T ss_pred chHHHHHHHHHHHHhC
Confidence 9999999999998764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=99.93 E-value=5.9e-25 Score=220.81 Aligned_cols=167 Identities=18% Similarity=0.156 Sum_probs=122.4
Q ss_pred HHHHHHHHH--hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 023326 90 KALNLVRIV--SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL 167 (284)
Q Consensus 90 ~a~~l~~~~--~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~ 167 (284)
....|++.+ .|..++|.++|+.|. .+|+++|+.+|.+|+++|+.++|+++|++|.+ ++.||.+||+++|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~-------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~ 497 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIP-------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALS 497 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCC-------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHH
Confidence 334444443 456667777776653 35666777777777777777777777777764 46666666666665
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----------------------------CCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQTR-----------------------------SISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~~~-----------------------------~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
+|++.|+++.+.+++..|++.|.. ++|..+||+||.+|+++|+.++|+++|
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555554444444331 248889999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 219 ADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
++|.+.|+.||.+||++||.+|++.|.+++|.++|++|.+++++.+
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999998777655
No 6
>PLN03077 Protein ECB2; Provisional
Probab=99.92 E-value=7.1e-24 Score=213.01 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=101.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|+.+|+.|. .||+++||.+|.+|++.|++++|+++|++|.+.|+.||.+||+++|.+|++.|+++.|
T Consensus 235 ~g~~~~A~~lf~~m~-------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 235 CGDVVSARLVFDRMP-------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred CCCHHHHHHHHhcCC-------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 355566777776653 3666777777777777777777777777777777766666666666666666666666
Q ss_pred HHHHHHHHHcCCCC------------------------------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 179 ESLWNMILHTQTRS------------------------------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 179 ~~l~~~m~~~~~~~------------------------------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+++..|.+.|..| +|..+||+||.+|++.|++++|+++|++|++.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 66666665555543 244556666666666666666666666666666667
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|..||+++|.+|++.|++++|.++++.|.+.
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~ 418 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERK 418 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 7777777777777777777777766666655
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=5.2e-16 Score=100.46 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 193 ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 193 ~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
||+++||+||.+|++.|++++|+++|++|++.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999985
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=3.2e-15 Score=96.70 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK 171 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~ 171 (284)
||+++||.+|.+|++.|++++|+++|++|.+.|+.||.+||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888875
No 9
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=5.3e-10 Score=100.26 Aligned_cols=131 Identities=14% Similarity=0.135 Sum_probs=114.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..+|..+|.++|+--..++|.+++++-.....+.+..+||.||.+-+-. .+++++++|++..+.| |..|||+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P-nl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP-NLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC-chHhHHHHH
Confidence 56799999999999999999999999999888889999999999876433 3489999999999997 999999999
Q ss_pred HHHHhCCChhHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHhHH
Q 023326 203 SLYDHHDMPNKI----IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK-QKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A----~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~-a~~l~~~m~~ 258 (284)
+...+.|+++.| ++++.||++-|+.|...+|..+|.-+++-++..+ +..++.+++.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N 341 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQN 341 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHH
Confidence 999999998865 5678899999999999999999999999988755 4445555443
No 10
>PF12854 PPR_1: PPR repeat
Probab=99.14 E-value=6.2e-11 Score=69.89 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 224 LGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 224 ~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|+.||.+||++||++||+.|++|+|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3667777777777777777777777777777763
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.14 E-value=6.2e-09 Score=95.41 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=57.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+... ...+++.++.+|++.|+++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHcCCHH
Confidence 3444444444444444444331 1123344444444455555555555555544432110 1233455555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|.+.++++.+. .|+...+..+...+.+.|++++|..+++++.+.
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555443 244444455555555555555555555555443
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.10 E-value=1.2e-08 Score=93.46 Aligned_cols=171 Identities=11% Similarity=0.066 Sum_probs=131.1
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAE 179 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~ 179 (284)
+..++|...|+.+... ..-+...+..+...|.+.|++++|+++|+++.+.+-.....+++.|..+|.+.|++++|.
T Consensus 194 ~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 194 GDLDAARALLKKALAA----DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHhH----CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 5555666666555321 122355777788899999999999999999997643333567899999999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHh
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR---VGQDDKQKLVLKKY 256 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~---~G~~d~a~~l~~~m 256 (284)
.+++.+.+.+ | +...++.++..|.+.|++++|+++|+++.+. .||..+++.++..+.. .|+.+++..++++|
T Consensus 270 ~~l~~~~~~~--p-~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 270 EFLRRALEEY--P-GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHHHhC--C-CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 9999998863 4 4455799999999999999999999998766 7999999999988875 56899999999999
Q ss_pred HHhc-CCCccccce-eeeecccccc
Q 023326 257 LSKW-KYIHFKGER-VRVRRDAWYE 279 (284)
Q Consensus 257 ~~~~-~~~~~~g~~-~~~~~~~~~~ 279 (284)
.++. .-.+.+.+. .+.....|++
T Consensus 345 ~~~~~~~~p~~~c~~cg~~~~~~~~ 369 (389)
T PRK11788 345 VGEQLKRKPRYRCRNCGFTARTLYW 369 (389)
T ss_pred HHHHHhCCCCEECCCCCCCCcccee
Confidence 8643 334444433 3455555543
No 13
>PF12854 PPR_1: PPR repeat
Probab=99.08 E-value=1.6e-10 Score=68.09 Aligned_cols=32 Identities=34% Similarity=0.478 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023326 154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMI 185 (284)
Q Consensus 154 g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m 185 (284)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.89 E-value=2.9e-08 Score=89.31 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
..||.+||.|+||-...+.|.+++.+-.....+- +..+||.+|.+-.-.-+ .+++.+|....++||..|||++|+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv-~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKV-YREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhee-eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 5899999999999999999999999998887774 88999999987654433 889999999999999999999999
Q ss_pred HHHHcCCHHHHH----HHHHHhHHhcC
Q 023326 239 AFQRVGQDDKQK----LVLKKYLSKWK 261 (284)
Q Consensus 239 a~~~~G~~d~a~----~l~~~m~~~~~ 261 (284)
..++.|+++.|. +++.+|++-..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGV 308 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGV 308 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCC
Confidence 999999988755 56667766544
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.81 E-value=6.2e-07 Score=89.57 Aligned_cols=131 Identities=9% Similarity=0.071 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+...|.+.|++++|.+.|+++.+.. +.+..+++.+...+.+.|+ .+|..+++...+. .|.+..++..+
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~ 843 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTL 843 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHH
Confidence 356666777777777888888888888877653 3466777777777877777 7788887777764 34466677788
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
...|.+.|++++|+++|+++.+.+.. |..++..+..++.+.|+.++|.+++++|.
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 88888889999999999888887654 88888888888999999999999888875
No 16
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.80 E-value=8.4e-09 Score=60.62 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6999999999999999999999999999999984
No 17
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.72 E-value=4.3e-06 Score=83.54 Aligned_cols=132 Identities=10% Similarity=-0.052 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+...|.+.|++++|+..|+.+.+.. +.+...+..+...+.+.|++++|..+++.+.+. .|.+..+|..++
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL--KPDNTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHH
Confidence 44555555556666666666666666655432 123445555555555666666666666655543 233455555555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+...|++++|+++++.|.+.+ ..+...+..+...+.+.|++++|.+.|..+.+
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 731 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK 731 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555443 22344455555555555555555555555544
No 18
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.63 E-value=4.5e-08 Score=57.28 Aligned_cols=33 Identities=21% Similarity=0.577 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888877
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.55 E-value=4.1e-05 Score=63.72 Aligned_cols=131 Identities=9% Similarity=0.018 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+..+-..+...|++++|...|++..+....+ ....+..+-..+.+.|++++|...+++..+.. |.+...|..+..
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 177 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHH
Confidence 344444455555566666666665555432111 23344444455555566666666665555432 223444555555
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+...|++++|.+++++..+. ...+...+..+...+...|+.++|..+.+.+.+
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555666666666666555544 222344444555555555666665555555443
No 20
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.53 E-value=1.4e-07 Score=55.18 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT 158 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~ 158 (284)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677788888888888888888888888887776
No 21
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.53 E-value=8.4e-08 Score=54.81 Aligned_cols=30 Identities=30% Similarity=0.496 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGV 226 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~ 226 (284)
|||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 688888888888888888888888887774
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.51 E-value=6e-05 Score=62.69 Aligned_cols=155 Identities=7% Similarity=-0.012 Sum_probs=120.1
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...++..-.. ..-+...+..+-..|...|++++|.+.|++..+.. +.+...+..+...+...|++++|
T Consensus 44 ~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A 118 (234)
T TIGR02521 44 QGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQA 118 (234)
T ss_pred CCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHH
Confidence 45555565555544221 12235566677778999999999999999988764 23556788888889999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+.+++..+....+.....+..+...|...|++++|.+.|++.....- .+...+..+...+...|++++|...+++..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 119 MQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987644444556688888999999999999999999876532 2456788888999999999999999999876
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
.
T Consensus 198 ~ 198 (234)
T TIGR02521 198 T 198 (234)
T ss_pred h
Confidence 5
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.47 E-value=2.5e-07 Score=54.01 Aligned_cols=33 Identities=21% Similarity=0.104 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA 157 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p 157 (284)
.+|+.+|.+|++.|++++|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 24
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.41 E-value=5.3e-06 Score=80.70 Aligned_cols=67 Identities=13% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----------------------CCHHHHHHH
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG--QG----------------------ATMGTYDTL 165 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~~----------------------p~~~ty~~L 165 (284)
+.+..+...+..|+-+||..+|..||..|+++.|- +|.-|.-.. +. |-.-||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 33444567788899999999999999999999998 877775332 11 557899999
Q ss_pred HHHHHhcCCHHH
Q 023326 166 LLAFDKDHRADE 177 (284)
Q Consensus 166 l~~~~~~g~~~~ 177 (284)
+.+|...||+..
T Consensus 90 l~ayr~hGDli~ 101 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHhccchHH
Confidence 999999998755
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.30 E-value=0.00013 Score=63.96 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=125.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCC
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHR 174 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~ 174 (284)
.|+.+.|+.+|..+-+ ...+-......++..|-+..+|++|+++-+++.+.|-.+. ...|+-|-..+....+
T Consensus 120 aGl~DRAE~~f~~L~d----e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 120 AGLLDRAEDIFNQLVD----EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred hhhhhHHHHHHHHHhc----chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 5888888888876632 2334556778899999999999999999999998765554 3577788777878889
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++.|..++..-.+.. |.++..--.+=..+...|+++.|++.++...+....--..+...|..+|.+.|+.+++...+.
T Consensus 196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999887764 335554445557888999999999999999988655556688999999999999999999988
Q ss_pred HhHHhc
Q 023326 255 KYLSKW 260 (284)
Q Consensus 255 ~m~~~~ 260 (284)
++.+.+
T Consensus 274 ~~~~~~ 279 (389)
T COG2956 274 RAMETN 279 (389)
T ss_pred HHHHcc
Confidence 877654
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.26 E-value=9.7e-06 Score=71.21 Aligned_cols=127 Identities=14% Similarity=0.115 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...|..+-..+.+.|+.++|+++|++.++. .| |....+.++..+...|+.+++.++++...+.. |.|...|..+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~l 220 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDAL 220 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 3333444444445555555555555554443 23 23444445555555555555555554444432 2233334555
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
-.+|...|+.++|+.+|++.... .| |......+..++...|+.++|.++..+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT--------------
T ss_pred HHHhccccccccccccccccccc--cccccccccccccccccccccccccccccc
Confidence 55555555555555555554332 22 444444445555555555555554443
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.24 E-value=1.6e-05 Score=69.85 Aligned_cols=137 Identities=12% Similarity=0.043 Sum_probs=103.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
++...+..++..+.+.|+++++.++++...... ...+...|..+-..+.+.|+.++|.+++++.++. .|.|....+.
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~ 185 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNA 185 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHH
Confidence 556667788888999999999999999987543 4567888888999999999999999999999986 4667888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++..+...|+.+++.++++...... ..|...+..+-.+|...|+.++|...|++..+...
T Consensus 186 l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 186 LAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999999999999999998887664 44555778889999999999999999999876543
No 28
>PRK12370 invasion protein regulator; Provisional
Probab=98.22 E-value=0.00014 Score=70.34 Aligned_cols=133 Identities=9% Similarity=-0.104 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...+..+=..+...|++++|...|++..+.+ |+ ...|..+-..+...|++++|...+++.++.. |.+...+..+
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~ 412 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITK 412 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHH
Confidence 34455555556778899999999999888763 43 5567777778888999999999999988764 4344334445
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...+...|++++|++.+++..... .|+ ...+..+-.++...|+.++|.+.+.++....
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 555777899999999998876553 343 3345666677888999999999988876543
No 29
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.20 E-value=0.00019 Score=70.68 Aligned_cols=126 Identities=21% Similarity=0.212 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE----AESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
.+...+.+.|++++|+..|+...+.. .-+...+..+-..+...|++++ |...+++.++. .|.+...+..+...
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 293 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Confidence 33445556666666666666655442 2234555556666666666664 56666666653 35566677777777
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.+.|++++|+..+++..+. .|+ ...+..+..+|.+.|++++|...++++.+.
T Consensus 294 l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777777777776654 343 345556667777788888888877777654
No 30
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.19 E-value=0.00036 Score=68.23 Aligned_cols=151 Identities=8% Similarity=-0.116 Sum_probs=119.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.|..++|...|+.. +...|+ ...|..+-..+...|++++|+..|+...+.. +-+..+|..+-..+...|++++
T Consensus 344 ~g~~~eA~~~~~ka-----l~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 417 (615)
T TIGR00990 344 KGKHLEALADLSKS-----IELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQ 417 (615)
T ss_pred cCCHHHHHHHHHHH-----HHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 35555555555433 223354 4466777777899999999999999987753 2356788888889999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...|++.++. .|.+...|..+...|.+.|++++|+..|++.... .| +...|+.+-..+...|++++|.+.|++.
T Consensus 418 A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 418 AGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999886 4667888888999999999999999999997754 45 4668888889999999999999999987
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 494 l~l 496 (615)
T TIGR00990 494 IEL 496 (615)
T ss_pred Hhc
Confidence 654
No 31
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.18 E-value=1.7e-06 Score=49.27 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG 154 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g 154 (284)
+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555555444
No 32
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.17 E-value=0.00058 Score=67.34 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=91.9
Q ss_pred cCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
|..++|...|+.+-. ..| +...+..+-..+.+.|++++|+..|+...+. .| +...+..+...+...|++++
T Consensus 90 g~~~~A~~~l~~~l~-----~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 90 SQPDAVLQVVNKLLA-----VNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred CCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHH
Confidence 444455555544421 122 3344555556677778888888888777654 23 45566777777777788888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|...+..+....-. +...+..+ ..+.+.|++++|+++++++....-.++...+..+..++...|++++|.+.+++..
T Consensus 163 A~~~~~~~~~~~P~--~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al 239 (656)
T PRK15174 163 AISLARTQAQEVPP--RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL 239 (656)
T ss_pred HHHHHHHHHHhCCC--CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 87777777655322 33333333 2366777777777777776655433444455555566777777777777777766
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 240 ~~ 241 (656)
T PRK15174 240 AR 241 (656)
T ss_pred hc
Confidence 44
No 33
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.17 E-value=4e-05 Score=63.86 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=74.5
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
+.|.++=....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|..+.-.+ -.+.+-|+
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~hy------------------p~Qq~c~i 123 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMHY------------------PRQQECAI 123 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhccC------------------cHHHHHHH
Confidence 468899899999999999999999999999999987 4442 244444444322 13456699
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 216 ~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
+++++|+..|+.||..|+..|+..+++.+..-
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999999988754
No 34
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.12 E-value=4.5e-05 Score=67.51 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRL 197 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~t 197 (284)
-+.......+..|.+.++++.|.+.++.|.+. ..|.. ..-|..++.. ...+.+|..+|++|.+.. +.+..+
T Consensus 129 ~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~ 203 (290)
T PF04733_consen 129 GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKL 203 (290)
T ss_dssp TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHH
T ss_pred CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHH
Confidence 44555566667777777777777777777654 23432 2223333222 235777777777776553 236666
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD-DKQKLVLKKYLSK 259 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~-d~a~~l~~~m~~~ 259 (284)
.|.+..++...|++++|.+++.+-.+..- -|..|...+|......|+. +.+.+++.+++..
T Consensus 204 lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 204 LNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 77777777777777777777776543321 1444666666666666666 5566677766644
No 35
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.05 E-value=0.0011 Score=66.67 Aligned_cols=160 Identities=9% Similarity=0.013 Sum_probs=118.9
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCC---HHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-----------QGAT---MGTYD 163 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-----------~~p~---~~ty~ 163 (284)
..+..++|+..|+.+..-...........+..+..++.+.|++++|+++++.+.+.. -.|| ...+.
T Consensus 284 ~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 284 KLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred hcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 456666777776654321000000113455666777899999999999999998752 1233 23455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 023326 164 TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQR 242 (284)
Q Consensus 164 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~ 242 (284)
.+...+...|++++|.++++++... .|.+...+..+...+...|++++|++++++..+. .|| ...+..+...+.+
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHH
Confidence 6777788999999999999999876 4668888999999999999999999999987664 475 4566666678899
Q ss_pred cCCHHHHHHHHHHhHHhcC
Q 023326 243 VGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~~ 261 (284)
.|++++|+++++++.+...
T Consensus 440 ~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred hCCHHHHHHHHHHHHHhCC
Confidence 9999999999999987643
No 36
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.02 E-value=0.00064 Score=66.51 Aligned_cols=131 Identities=11% Similarity=0.005 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...+..+-..+...|++++|+..|+..++. .|+ ...|..+-..+...|++++|...|++.++. .|.+..+|..+.
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg 406 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRA 406 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345566666678899999999999998865 454 568888888899999999999999999876 455788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|++.|++..+. .| +...+..+...+.+.|++++|...|++..+..
T Consensus 407 ~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 463 (615)
T TIGR00990 407 QLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF 463 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998765 45 45677778888999999999999999987654
No 37
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00039 Score=63.94 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=102.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.++..+...+++++|+.+|+++.+.. |++.. .|...+...++-.+|.+++++.++. .|.+....+.-...+.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev~~--~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEVAV--LLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcHHH--HHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 66777777899999999999999885 66543 4777777778888999999998865 344777778888889999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 209 DMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|+.+.|+++.+++.+. .|+.+ +|..|..+|.+.|+++.|...++.+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999998765 78777 99999999999999999999999886
No 38
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.98 E-value=0.0002 Score=53.46 Aligned_cols=74 Identities=9% Similarity=0.247 Sum_probs=42.4
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH--------DMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~--------G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
|...+++...-.+|..+++.|+.-|++.+||.++.+-++- +.+-+++.+|+.|...+++|+..||+.+|..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333444444444444444444112444444444443332 23445677888888888999999999988877
Q ss_pred HH
Q 023326 241 QR 242 (284)
Q Consensus 241 ~~ 242 (284)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 54
No 39
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.96 E-value=0.0012 Score=67.67 Aligned_cols=120 Identities=13% Similarity=0.038 Sum_probs=94.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|++-.+. .|+...|..+-..+.+.|+.++|...+++.++. .|.+...++.+-..+...|++++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 34458888888888887755 467778888888888888999998888888875 46677788888888888999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|+++|++..+. .| +...+..+-.++...|++++|...+++..+.
T Consensus 662 Ai~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 662 SREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99988887664 44 4557788888888999999998888877643
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=97.95 E-value=0.0014 Score=63.27 Aligned_cols=155 Identities=10% Similarity=-0.052 Sum_probs=107.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~ 176 (284)
.+..++|...|+..- ...|+ ...+..+-..|...|++++|+..|++..+.. |+ ...+..++..+...|+++
T Consensus 351 ~g~~~~A~~~~~~Al-----~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQAN-----LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGID 423 (553)
T ss_pred ccCHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHH
Confidence 344455555554332 23354 4556666777999999999999999988764 33 223334454567789999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~ 255 (284)
+|...+.++.+.. .|.+...+..+-..|...|++++|...+.++... .|+..+....+ ..|+..| |++...++.
T Consensus 424 eA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ 498 (553)
T PRK12370 424 DAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIRE 498 (553)
T ss_pred HHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHH
Confidence 9999999987653 2335556788888899999999999999887544 55555444444 4567777 588888888
Q ss_pred hHHhcCCCcc
Q 023326 256 YLSKWKYIHF 265 (284)
Q Consensus 256 m~~~~~~~~~ 265 (284)
+.+...-.++
T Consensus 499 ll~~~~~~~~ 508 (553)
T PRK12370 499 FLESEQRIDN 508 (553)
T ss_pred HHHHhhHhhc
Confidence 8776555544
No 41
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.93 E-value=0.00011 Score=67.95 Aligned_cols=120 Identities=10% Similarity=-0.062 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+.+....++..+...-+++++..++...... ...--..|.+++|..|.+.|..+.+..+++.=...|+-| |..+||.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFP-DNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCC-ChhhHHH
Confidence 4555666666666677788888888877755 222223455688899999888888888888888888886 8888999
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
||..+.+.|++..|.+++.+|...+...+..|+..-+.+|.+.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999988888888778888888888888776
No 42
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=97.91 E-value=0.00031 Score=68.82 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=77.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 156 ~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
.|+..+|+.+++.-..+|+++.|..++.+|.+.|..- +..-|-.||-| .|+...++.+++-|.+.|+.|+..||..
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHH
Confidence 4999999999999999999999999999999999864 54445566655 8999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHH
Q 023326 236 IASAFQRVGQDDKQ 249 (284)
Q Consensus 236 ll~a~~~~G~~d~a 249 (284)
.+-.+...|....+
T Consensus 277 yvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 277 YVIPQLSNGQTKYG 290 (1088)
T ss_pred HHHhhhcchhhhhc
Confidence 99888876654433
No 43
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.85 E-value=0.00033 Score=52.33 Aligned_cols=78 Identities=8% Similarity=0.153 Sum_probs=65.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQ-GATMGTYDTLLLAFDKDH--------RADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~~~ty~~Ll~~~~~~g--------~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
..|..+...|++.....+|+.+++.|+ .|.+.+|+.+|.+.++.. .+-+.+.++..|+..+++| +..|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHHHHH
Confidence 445557788999999999999999999 999999999999988743 2445677899999999997 999999
Q ss_pred HHHHHHHh
Q 023326 200 RMISLYDH 207 (284)
Q Consensus 200 ~lI~~~~~ 207 (284)
.+|..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99988765
No 44
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.83 E-value=0.0034 Score=59.53 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=116.2
Q ss_pred cCCchHHHHHHHHHH-HHH--ccCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHH
Q 023326 100 ELPNEKHAVYGALDK-WTA--WETEFPLIAA-AKALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLA 168 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~-~~~--~~~~p~~~~y-~~~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~ 168 (284)
|.+.+|+..++..-+ +.. ....|.+.+. +-+...|+..+++++|..+++.-.+. -+.++ ..+|+.|=..
T Consensus 297 GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l 376 (508)
T KOG1840|consen 297 GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAEL 376 (508)
T ss_pred CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 666666655543333 222 1223344433 45666688899999999999875532 22333 3689999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcC----CC--CCCHHHHHHHHHHHHhCCChhHHHHHHHH----HHHCCC-CCCHH-HHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQ----TR--SISKRLFSRMISLYDHHDMPNKIIEVFAD----MEELGV-RPDED-TVRRI 236 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~----~~--~~~~~tyn~lI~~~~~~G~~~~A~~l~~~----M~~~g~-~Pd~~-ty~~l 236 (284)
|-+.|++++|++++.+.+..- .. ...-..+|-|-..|-+.+..++|..+|.+ |+..|. .||+. ||..|
T Consensus 377 ~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL 456 (508)
T KOG1840|consen 377 YLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNL 456 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 999999999999998886543 11 21234578899999999999999999997 555663 36554 89999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++|.|.++.+...+-
T Consensus 457 ~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 457 AALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999988744
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.83 E-value=0.0019 Score=67.80 Aligned_cols=138 Identities=11% Similarity=-0.002 Sum_probs=110.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+-..|.+.|+.++|+..|+...+.. +-+...+..+...+...|+.++|.+.++.+.+. .|.+..++..+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~l 677 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRV 677 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 344455667777899999999999999988763 236788999999999999999999999988764 45567778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCC--C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVR--P---DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~--P---d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
-..+...|++++|.++|++.....-. | +...+..+...+...|+.++|...|+......++
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~ 743 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGI 743 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCC
Confidence 89999999999999999998765322 2 3346666678889999999999999988755444
No 46
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00023 Score=65.85 Aligned_cols=116 Identities=10% Similarity=0.145 Sum_probs=95.7
Q ss_pred HHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 146 VAKWMLS---KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 146 l~~~M~~---~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
++..|.+ .+.....+....+++.+....++++++.++..+...... ..-..|..++|..|...|..++++++++.=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 4555543 345667889999999999999999999998888765221 012234579999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 222 EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 222 ~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..-|+-||.+|||.||+.+.+.|++..|.++..+|..+-.
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~ 169 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEE 169 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999875533
No 47
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.79 E-value=0.0051 Score=63.15 Aligned_cols=150 Identities=11% Similarity=0.013 Sum_probs=106.2
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|...|+.+ ....|+...+..+-..+.+.|+.++|...|+...+.. ..+...+..+...+.+.|++++|
T Consensus 522 ~Gr~eeAi~~~rka-----~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 522 VEDYATALAAWQKI-----SLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred CCCHHHHHHHHHHH-----hccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 34455555555433 1223444445555667888899999999998888764 22333333344445566999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
...+++.++. .| +...|..+-..+.+.|++++|++.|++..+. .| +...++.+-.++...|+.++|..++++..
T Consensus 596 l~~~~~AL~l--~P-~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLNI--AP-SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHh--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988875 35 5777888899999999999999999987665 45 44566777778999999999999998877
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 671 ~l 672 (987)
T PRK09782 671 KG 672 (987)
T ss_pred Hh
Confidence 65
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.78 E-value=0.0026 Score=63.97 Aligned_cols=117 Identities=11% Similarity=0.138 Sum_probs=58.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.|...|++++|+++|+++.+..- -|...+..|...+.+.++.++|.+.++.+... .| +...|-.++..+...++..
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp-~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DP-TVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--Cc-chHHHHHHHHHHHhcchHH
Confidence 44455666666666666554421 12333445555555566666666666655543 22 3333333333333344444
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+|++.++++.+. .| +...+..++.++.+.|....|.++..+
T Consensus 187 ~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 187 DALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 466666665554 23 333445555556666665555555443
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.77 E-value=0.0054 Score=56.82 Aligned_cols=157 Identities=10% Similarity=0.049 Sum_probs=104.2
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhc
Q 023326 95 VRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD--TLLLAFDKD 172 (284)
Q Consensus 95 ~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~--~Ll~~~~~~ 172 (284)
+....|..+.|++....-... ... ....|-..-.+..+.|+.++|.+.|.++.+. .|+...+. .....+...
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~---~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~ 166 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADH---AEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLAR 166 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhc---ccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHC
Confidence 333456666666554433221 111 1223333344447888899999998888764 45544333 334567788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC------------------------
Q 023326 173 HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP------------------------ 228 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P------------------------ 228 (284)
|+.+.|...++++.+.. |.+......+...|.+.|++++|.+++..+.+.+..+
T Consensus 167 g~~~~Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 167 NENHAARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999888888764 5577778888888999999999998888887665432
Q ss_pred -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 229 -----------------DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 229 -----------------d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+......+..++...|+.++|.+++++..++
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~ 292 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR 292 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2223345566777888888888888777654
No 50
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.76 E-value=0.004 Score=62.59 Aligned_cols=150 Identities=12% Similarity=0.066 Sum_probs=116.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|..++..... ....+...+..+-..+.+.|++++|..+|+..++.. +.+...+..+...+.+.|+.++
T Consensus 27 ~~g~~~~A~~~~~~~~~----~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 27 WAGQDAEVITVYNRYRV----HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HcCCHHHHHHHHHHHHh----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 35666666655554431 233455567888888999999999999999987652 2345667788888999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...++++++. .|.+.. |..+-..+...|+.++|+..+++..+. .| +...+..+..++...|..++|.+.++..
T Consensus 102 A~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 102 ALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999999987 455777 999999999999999999999998876 44 4445566777888899999999888754
Q ss_pred H
Q 023326 257 L 257 (284)
Q Consensus 257 ~ 257 (284)
.
T Consensus 177 ~ 177 (765)
T PRK10049 177 N 177 (765)
T ss_pred C
Confidence 4
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.75 E-value=0.0019 Score=59.97 Aligned_cols=130 Identities=12% Similarity=0.030 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCCH--HH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY-DTLLLAF--DKDHRADEAESLWNMILHTQTRSISK--RL 197 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty-~~Ll~~~--~~~g~~~~A~~l~~~m~~~~~~~~~~--~t 197 (284)
+...+..+...+.+.|+.++|.+++++..+. .||.... ..++..+ ...++.+.+.+.++...+. .|.|. ..
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~l 337 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCI 337 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHH
Confidence 6778888889999999999999999999876 3443321 0133333 3457888888888887765 35566 77
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..++-..|.+.|++++|.+.|+.-......||...+..+...+-+.|+.++|.+++++-
T Consensus 338 l~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 338 NRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 78999999999999999999996555556899999999999999999999999999864
No 52
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.75 E-value=0.0029 Score=58.65 Aligned_cols=126 Identities=14% Similarity=0.084 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
++.....+...+.+.|+.++|..++++..+. .||.. -.++.+....++.+++.+..+...+. .|.|...+.++-
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lg 335 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLG 335 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHH
Confidence 5556678888899999999999999998874 45542 22455555679999999999999876 466888899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++.+-
T Consensus 336 rl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999998865 799999999999999999999999998754
No 53
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.73 E-value=0.0021 Score=67.46 Aligned_cols=124 Identities=15% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.....+...|+.++|+.+++. .+.+...+..|-..+.+.|+.++|...|++.++. .|.+...+..+...|...
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence 345668889999999999872 2445567778888899999999999999999986 466888999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 209 DMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|++++|+++++...+. .|+ ..++..+-.++...|+.++|.++++.+.....
T Consensus 651 g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 651 GDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 9999999999976543 453 44667777889999999999999999887643
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.73 E-value=0.0025 Score=49.14 Aligned_cols=103 Identities=8% Similarity=0.019 Sum_probs=73.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
...+...+.+.|+.++|.+.|+.....+ ..+...+..+-..+.+.|++++|..+++..++.+ |.+..+|..+-..|.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHH
Confidence 3344455777888888888888877653 3356777777777888888888888888877754 446666777777888
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
..|+.++|+..|++..+. .|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 888888888888776654 35444433
No 55
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.70 E-value=0.00096 Score=59.07 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=106.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHccCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023326 90 KALNLVRIVSELPNEKHAVYGALDKWTAWETE-FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA 168 (284)
Q Consensus 90 ~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~-p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~ 168 (284)
.+..++-.........+.+...+.++..-... .+....-..-..+...|++++|+++++.- -+.......+..
T Consensus 67 ~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi 140 (290)
T PF04733_consen 67 QAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQI 140 (290)
T ss_dssp HHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHH
Confidence 34444433444444555666666553222222 12222222223456679999999988642 467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRL---FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~t---yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
|.+.++++.|.+.++.|.+.+ . |... ..+.|..+...+.+++|+.+|++|.+. ..++..+.+.+..++...|+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~--e-D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~ 216 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQID--E-DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH 216 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCS--C-CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-
T ss_pred HHHcCCHHHHHHHHHHHHhcC--C-cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999998763 2 3332 344455555556899999999998654 67889999999999999999
Q ss_pred HHHHHHHHHHhHH
Q 023326 246 DDKQKLVLKKYLS 258 (284)
Q Consensus 246 ~d~a~~l~~~m~~ 258 (284)
+++|.+++.+..+
T Consensus 217 ~~eAe~~L~~al~ 229 (290)
T PF04733_consen 217 YEEAEELLEEALE 229 (290)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.70 E-value=0.0032 Score=62.20 Aligned_cols=130 Identities=13% Similarity=0.092 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..+-.+-.+..+.|+.++|..+++...+. .|| +.....+...+.+.+++++|....++..+. .|.+....+.+-
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEA 161 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHH
Confidence 566667777788899999999999988865 665 456677778888999999999999998876 455778888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.++.+.|++++|+++|++.... .|| ..++..+-.++-+.|+.++|...|+...+.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999998873 444 678888888899999999999999887654
No 57
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.68 E-value=0.0015 Score=57.65 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..|..+|....+.+..+.|..+|.+-++.+ +...++...++|.-+ -.++.+.|.+||+..++... .+...|...|.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 467788888999999999999999988654 456666666666443 34678889999999998743 47888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDED----TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~----ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-+.+.|+.+.|..+|++.... .|... .|...|.-=.+.|+++.+.++.+++.+.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred HHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 999999999999999997655 44444 899999999999999999999988887644
No 58
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.66 E-value=0.0038 Score=49.21 Aligned_cols=124 Identities=12% Similarity=0.088 Sum_probs=87.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH--HHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT---MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK--RLFSRM 201 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~--~tyn~l 201 (284)
|..++..+ ..++...+...++.+.+.. .-+ ....-.+-..+...|++++|...|+...+....+ +. ...-.|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHH
Confidence 44444445 4788899999999998763 222 1223334466778999999999999999876221 22 234557
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
...+...|++++|+..++......+ ....+...-+.|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7888899999999999977443333 334556667889999999999998875
No 59
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.66 E-value=0.0035 Score=49.50 Aligned_cols=99 Identities=9% Similarity=0.010 Sum_probs=80.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
-..+.+.|++++|...|+...... +.+...|..+-..+.+.|++++|...|+..... .|.+...|..+-.++.+.|+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHcCC
Confidence 344788999999999999988653 236788888888999999999999999999975 46688889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
+++|++.|++-... .|+...|.
T Consensus 108 ~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHh--CCCChHHH
Confidence 99999999987654 56544433
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.65 E-value=0.0039 Score=53.01 Aligned_cols=159 Identities=16% Similarity=0.088 Sum_probs=107.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHhc---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GATM-GTYDTLLLAFDKD--- 172 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~~-~ty~~Ll~~~~~~--- 172 (284)
.+..++|...|+.+.... -..|. ..++..+-..|.+.|++++|+..|+.+.+..- .|.. .++..+-..+.+.
T Consensus 46 ~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 46 SGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred cCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 455556665555543211 01111 13445556678999999999999999987531 2222 2343344444443
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCCHHHH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCC-CC-
Q 023326 173 -----HRADEAESLWNMILHTQTRSISKRLF-----------------SRMISLYDHHDMPNKIIEVFADMEELGV-RP- 228 (284)
Q Consensus 173 -----g~~~~A~~l~~~m~~~~~~~~~~~ty-----------------n~lI~~~~~~G~~~~A~~l~~~M~~~g~-~P- 228 (284)
|+.++|.+.++.+++.+-. +...+ -.+-..|.+.|++++|+..|++..+..- .|
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 6789999999999876433 33222 1345668889999999999999876532 23
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
....+..+..++.+.|+.++|..+++.+..++.
T Consensus 202 ~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 202 TEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356888999999999999999999999987763
No 61
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.0016 Score=45.16 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=55.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+-..+...|++++|+.+|++..+.. ..+...+..+-..+...+++++|.++++...+.. |.+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHHHHH
Confidence 3344666777777777777766542 1223555556666666677777777777666653 224455666666777777
Q ss_pred ChhHHHHHHHHHH
Q 023326 210 MPNKIIEVFADME 222 (284)
Q Consensus 210 ~~~~A~~l~~~M~ 222 (284)
+.++|.+.+.+..
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777666654
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.65 E-value=0.0045 Score=51.68 Aligned_cols=117 Identities=11% Similarity=0.047 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCCC--hhHH
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHDM--PNKI 214 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G~--~~~A 214 (284)
++.++++..++...+.. +.|...|..|-..|...|++++|...++...+.. |.+...|..+-.+ |...|+ .++|
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 33444444444433321 2244455555555555555555555555554432 3344444444443 234444 2555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+++++..+..-. +...+..+-.++...|++++|...|+++.+
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554443222 333444444455555555555555555543
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.63 E-value=0.0023 Score=50.48 Aligned_cols=95 Identities=8% Similarity=0.031 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
+..+-..+...|++++|...|...+.. .|.+...|..+-..+.+.|++++|+..|++..+.. .-+...+..+-.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 445667788999999999999999875 56688999999999999999999999999988753 237778888999999
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999987654
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.61 E-value=0.011 Score=52.58 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...|+.+=..|...|++++|+..|+...+. .| +..+|..+-..+...|++++|.+.|+...+.. |.+.. .....
T Consensus 98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~-~~~~~ 172 (296)
T PRK11189 98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPY-RALWL 172 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHH
Confidence 445555555555666666666666555543 23 23445555555555566666666665555432 22221 11111
Q ss_pred HHHHhCCChhHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~ 220 (284)
..+...++.++|++.|.+
T Consensus 173 ~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 173 YLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHccCCHHHHHHHHHH
Confidence 122334555666666544
No 65
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0083 Score=51.59 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=90.5
Q ss_pred cCCchHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWET-EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~-~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
......+.....+.+|.+--. +-+.+........|++.|++++|++...... +......=+..+.+..+++-|
T Consensus 83 ~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A 156 (299)
T KOG3081|consen 83 ELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLA 156 (299)
T ss_pred hCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444433322 2222334445555888888888887776521 223333334446677788888
Q ss_pred HHHHHHHHHcCCCCCCHHHHH----HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFS----RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn----~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++.++.|.+-. +..|.+ +.|......+.+.+|+-+|++|-++ ..|+..+.+-...++...|++++|..+++
T Consensus 157 ~~~lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ 231 (299)
T KOG3081|consen 157 EKELKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLE 231 (299)
T ss_pred HHHHHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHH
Confidence 88888887632 334444 3344444456778888888887543 67777888888888888888888888887
Q ss_pred HhHHh
Q 023326 255 KYLSK 259 (284)
Q Consensus 255 ~m~~~ 259 (284)
+...+
T Consensus 232 eaL~k 236 (299)
T KOG3081|consen 232 EALDK 236 (299)
T ss_pred HHHhc
Confidence 77644
No 66
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.0077 Score=51.53 Aligned_cols=126 Identities=11% Similarity=0.007 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
...+.......++|++.+|+..|++.... -++|..+|+.+=.+|.+.|++++|..-|.+..+.... +....|-|-..
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms 177 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHH
Confidence 34445778899999999999999998754 4678999999999999999999999999999886443 55667888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
|.-.|+.+.|..++..-...+.. |...-..|.......|++++|+.+-.
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88889999999999998776544 55666777788899999999988764
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.53 E-value=0.0029 Score=43.76 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
|..+...+...|++++|..++++..+.. |.+...+..+...|...|++++|+++|++..... ..+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 5556677888999999999999998763 4355778889999999999999999999977654 224467888888999
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...+....+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999877643
No 68
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.53 E-value=0.004 Score=47.97 Aligned_cols=103 Identities=14% Similarity=0.155 Sum_probs=84.7
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 156 GA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 156 ~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
.| +......+...+.+.|++++|.+.|+.+.+.+ |.+...|..+-..|.+.|++++|.++|++....+ ..+...+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 44 34556677778889999999999999998864 5578889999999999999999999999876654 33566777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+-..|...|+.++|.+.|+...+...
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 778899999999999999988877643
No 69
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.48 E-value=0.014 Score=51.55 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=105.3
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 023326 93 NLVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAA-KALRILRKRGQWLRVIQVAKWMLSKGQGATM------GTYDTL 165 (284)
Q Consensus 93 ~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~-~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~------~ty~~L 165 (284)
.+-..++...+.|-+.|-.|-. ..|..+-.+ ++=+.|.+.|.+|+|+++.+-+.+. ||. ...--|
T Consensus 42 GlNfLLs~Q~dKAvdlF~e~l~-----~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 42 GLNFLLSNQPDKAVDLFLEMLQ-----EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHHHHhhcCcchHHHHHHHHHh-----cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 3334467788888888766643 112222222 3334588899999999999988875 432 222234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED----TVRRIASAFQ 241 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~----ty~~ll~a~~ 241 (284)
-.=|-..|-+|.|+.+|..+++.+-. ....--.|+..|-...++++|+++-+++...|-++..+ -|--|-..+.
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~ 191 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL 191 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh
Confidence 44467789999999999999986654 44557889999999999999999999888776554433 2333334444
Q ss_pred HcCCHHHHHHHHHHhHH
Q 023326 242 RVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~ 258 (284)
...++|.|..++.+-..
T Consensus 192 ~~~~~d~A~~~l~kAlq 208 (389)
T COG2956 192 ASSDVDRARELLKKALQ 208 (389)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 55677777777776653
No 70
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0063 Score=45.34 Aligned_cols=98 Identities=11% Similarity=0.032 Sum_probs=56.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMIS 203 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~ 203 (284)
+-.....+.+.|++++|...|+.+.+..- ......+..+-..+.+.|++++|...|+.+...+-. +.....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444556666777777777776665421 111234445666666677777777777766654322 112334555666
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 023326 204 LYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|.+.|+.++|.+.+++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666667777777777766655
No 71
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.47 E-value=0.016 Score=58.49 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-----QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT------- 190 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-----~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~------- 190 (284)
+..+-..+-.+|...++.++|+.+|+...... ..++......|..++..++++++|..+++.+.+.--
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 44444566666666666666666666665432 122344455666666666666666666666665210
Q ss_pred -----CCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 191 -----RSISKR-LFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 191 -----~~~~~~-tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+|.. .+..++..+...|++.+|++.++++... .| |.-....+-+.+...|..++|++.++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 001211 1234455566666666666666666322 44 5556666666666666666666666433
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.38 E-value=0.018 Score=53.44 Aligned_cols=149 Identities=15% Similarity=0.026 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 023326 89 QKALNLVRIVSELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLL 166 (284)
Q Consensus 89 ~~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll 166 (284)
....++.....+..++|+..++.+- ...|+ +.-.......+.+.++.++|.+.|+.+... .|+ ....-.+-
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~-----~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a 381 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLI-----AAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHH
Confidence 3455555666788888888877653 23354 444446667799999999999999998876 566 34455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.+|-+.|+..+|..+++..... .|.|...|+.|-.+|...|+..+|..-..|+ |.-.|.+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~--~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~ 441 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFN--DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRL 441 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhc--CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCH
Confidence 7788899999999999888765 3558888999999999999999998877765 5567777
Q ss_pred HHHHHHHHHhHHhcCCCc
Q 023326 247 DKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 247 d~a~~l~~~m~~~~~~~~ 264 (284)
+.|...+....++.+...
T Consensus 442 ~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 442 EQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHHHHHHHHHHhccCCc
Confidence 777777777666655433
No 73
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.015 Score=43.28 Aligned_cols=101 Identities=14% Similarity=0.212 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-C-CHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-P-DEDTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-P-d~~ty~~ll 237 (284)
++-.+...+.+.|++++|.+.++.+++..-. +.....+..+...|.+.|++++|+++|++.....-. | ....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4566777788899999999999999876432 112445777899999999999999999998765322 1 245677777
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..+.+.|+.++|.+.++++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCc
Confidence 889999999999999999988765
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.31 E-value=0.024 Score=53.88 Aligned_cols=161 Identities=11% Similarity=0.106 Sum_probs=109.9
Q ss_pred hcCCchHHHHHHHHHHH--HHc-cCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKW--TAW-ETEFPLIAAAK-ALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~--~~~-~~~p~~~~y~~-~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~ 167 (284)
.+..+.|+.+|+.--.- ... ...|.+.+... +=..|...+++++|..+|+++..- .+-++ +.|++.|=.
T Consensus 212 ~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ 291 (508)
T KOG1840|consen 212 QGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAV 291 (508)
T ss_pred hccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46666666666422211 011 12333333333 444588899999999999998752 22233 467888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-----CCCCCH-HHHHHHHHHHHhCCChhHHHHHHHHHHH---CCCCCCH----HHHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQ-----TRSISK-RLFSRMISLYDHHDMPNKIIEVFADMEE---LGVRPDE----DTVR 234 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~-----~~~~~~-~tyn~lI~~~~~~G~~~~A~~l~~~M~~---~g~~Pd~----~ty~ 234 (284)
+|++.|++++|+.+++.-++-. ..++.+ .-++.++..|+..+++++|..+++.-.+ .-..++. -+|+
T Consensus 292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~ 371 (508)
T KOG1840|consen 292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYA 371 (508)
T ss_pred HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHH
Confidence 8999999999988876654322 222232 3378889999999999999999986432 1123333 3899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|-..|-+.|++++|+++|++...+
T Consensus 372 nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 372 NLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9999999999999999999988744
No 75
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.30 E-value=0.0023 Score=49.36 Aligned_cols=81 Identities=9% Similarity=0.112 Sum_probs=42.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR--------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~--------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
|..++.++|.++++.|+++..+.+.+..=.-... -|+..+-.+++.+|+.+|++..|+++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5667888888888888888877776554211100 11444444444444444444444444444322
Q ss_pred -CCCCCCHHHHHHHHH
Q 023326 224 -LGVRPDEDTVRRIAS 238 (284)
Q Consensus 224 -~g~~Pd~~ty~~ll~ 238 (284)
-++.-+..+|..|+.
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 233334444444443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.29 E-value=0.015 Score=49.07 Aligned_cols=120 Identities=13% Similarity=0.113 Sum_probs=57.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
|.+.|+...|..-+++-++. .|+ .-+|..+-..|-+.|+.+.|.+-|+.-++.. |.+-.+.|-.=.-+|..|.++
T Consensus 45 YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhhHHHHhCCChH
Confidence 55555555555555554443 232 2344444445555555555555555554432 223333444444455555555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|...|++-...---| -..||..+.-...+.|+++.|++.|.+-.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL 166 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL 166 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH
Confidence 5555555544333222 22244444444445555555555555444
No 77
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.29 E-value=0.035 Score=51.57 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 91 ALNLVRIVSELPNEKHAVYGALDKWTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 91 a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
...++....|....|++......+ ..|+ ...|-..-.+..+.|+.++|.+.|.+..+..-.++...--+....+
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~-----~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~ 163 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNAD-----HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRIL 163 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Confidence 334455556777777776654332 2343 3344455566778899999999999987653222223333446667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
...|+++.|...++.+.+.+ |.+..++-.+...|.+.|++++|.+++.++.+.++.
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 88999999999999999875 557788999999999999999999999999988754
No 78
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.27 E-value=0.011 Score=46.40 Aligned_cols=97 Identities=16% Similarity=0.223 Sum_probs=68.0
Q ss_pred HHcCCHHHHHHHHHHHHHc--C-CCCC------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023326 135 RKRGQWLRVIQVAKWMLSK--G-QGAT------------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~--g-~~p~------------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 193 (284)
...|+.+.+.+.+.+.... | +-|+ ......++..+...|+.++|..+...++.. .|.
T Consensus 17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~ 94 (146)
T PF03704_consen 17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALAL--DPY 94 (146)
T ss_dssp HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCC
Confidence 4556777777777776643 2 2222 244556666777899999999999999986 467
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHHHH
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADME-----ELGVRPDEDTV 233 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g~~Pd~~ty 233 (284)
+...|-.+|.+|.+.|+..+|+++|+++. +.|+.|+..|-
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 89999999999999999999999999873 56999988763
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.24 E-value=0.025 Score=47.97 Aligned_cols=137 Identities=9% Similarity=0.029 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-RLFSR 200 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~tyn~ 200 (284)
...+-.....+.+.|++++|...|++..+..- .|. ...+..+-..+-+.|++++|...++++++..-..+.. .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 33444444559999999999999999877531 121 2466777888999999999999999999875432221 23444
Q ss_pred HHHHHHhC--------CChhHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHH
Q 023326 201 MISLYDHH--------DMPNKIIEVFADMEELGVRPDED-TV-----------------RRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 201 lI~~~~~~--------G~~~~A~~l~~~M~~~g~~Pd~~-ty-----------------~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+-..|.+. |+.++|++.|++.... .|+.. .+ ..+-..|.+.|+.++|...++
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444443 7899999999998765 33221 11 134456788899999999999
Q ss_pred HhHHhcCC
Q 023326 255 KYLSKWKY 262 (284)
Q Consensus 255 ~m~~~~~~ 262 (284)
+..+.+.-
T Consensus 191 ~al~~~p~ 198 (235)
T TIGR03302 191 TVVENYPD 198 (235)
T ss_pred HHHHHCCC
Confidence 99887653
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.24 E-value=0.00085 Score=47.64 Aligned_cols=81 Identities=15% Similarity=0.251 Sum_probs=41.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G~~d~a~ 250 (284)
.|+++.|..+++.+.+..-..++...|-.+-..|.+.|++++|++++++ ....|+. .....+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~---~~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK---LKLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC---HTHHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666665533100223334466666666666666666666 1122222 22223345566666666666
Q ss_pred HHHHH
Q 023326 251 LVLKK 255 (284)
Q Consensus 251 ~l~~~ 255 (284)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.24 E-value=0.024 Score=50.24 Aligned_cols=130 Identities=9% Similarity=-0.065 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..|...=..|.+.|++++|...|++..+.. +-+...|+.+-..+...|++++|...|+..++. .|.+..+|.-+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 335555556889999999999999988753 235789999999999999999999999999875 46577888889999
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|++.|++-.+. .|+..........+...++.++|...|++....
T Consensus 142 l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999999999997765 454332223333345677899999999775543
No 82
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.23 E-value=0.00079 Score=47.78 Aligned_cols=82 Identities=11% Similarity=0.101 Sum_probs=60.6
Q ss_pred HcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQ-GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~-~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+|++++|+.+|+.+.+..- .++...+-.+-.+|.+.|++++|..+++. .+. .+.+....-.+-.+|.+.|++++|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHH
Confidence 36899999999999998743 22455555588899999999999999988 322 222434344557889999999999
Q ss_pred HHHHHH
Q 023326 215 IEVFAD 220 (284)
Q Consensus 215 ~~l~~~ 220 (284)
+++|++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 83
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.23 E-value=0.04 Score=49.67 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCH--HHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDE--DTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~--~ty~~ll 237 (284)
....+-..+...|++++|...+++..+.. |.+...+..+-..|...|++++|+..+++.....- .|+. ..|..+.
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 33344455666777777777777777643 44555666777777777777777777776554321 2332 2344566
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 023326 238 SAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~ 257 (284)
..+...|+.++|..++++..
T Consensus 194 ~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 194 LFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 66777777777777777763
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.21 E-value=0.0024 Score=60.82 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 193 (284)
|.+++.. |.-+++.+.|++.|++-.+. .| .+++|+.+=+-+.....+|.|...|+.-+... |.
T Consensus 424 Wca~GNc------------fSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~r 487 (638)
T KOG1126|consen 424 WCALGNC------------FSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PR 487 (638)
T ss_pred HHHhcch------------hhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--ch
Confidence 8888888 99999999999999887754 44 56777776666677777777777766554322 22
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+-..|--|-..|.+.++++.|+--|++- ..+.| +.+....+-..+-+.|+.|+|.+++++.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 3333333444555555555555555442 22333 3333333444445555555555555543
No 85
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.16 E-value=0.042 Score=44.51 Aligned_cols=82 Identities=7% Similarity=0.093 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
|..+-..|...|++++|+..|++..+..-.+. ...+..+-..+.+.|++++|...+.+.++. .|.+...+..+...
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 33444448889999999999999887543332 467888888899999999999999998885 34467777777788
Q ss_pred HHhCCC
Q 023326 205 YDHHDM 210 (284)
Q Consensus 205 ~~~~G~ 210 (284)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.14 E-value=0.018 Score=46.35 Aligned_cols=85 Identities=8% Similarity=0.040 Sum_probs=64.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH-----
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA--TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD----- 206 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p--~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~----- 206 (284)
+...|++++|+..|+......-.| ...+|..+-..+.+.|+.++|...++..... .|....+++.+...|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~~~~~~ 122 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICHYRGEQ 122 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhhHH
Confidence 778899999999999887653222 2357888888889999999999999888875 3445566777777777
Q ss_pred --hCCChhHHHHHHHH
Q 023326 207 --HHDMPNKIIEVFAD 220 (284)
Q Consensus 207 --~~G~~~~A~~l~~~ 220 (284)
..|+++.|+..+++
T Consensus 123 ~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 123 AIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHcccHHHHHHHHHH
Confidence 77888876666654
No 87
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.10 E-value=0.019 Score=52.41 Aligned_cols=102 Identities=9% Similarity=-0.015 Sum_probs=83.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+...|++++|+++|++.++.. .-+...|..+-.+|.+.|++++|...++..++. .|.+...|..+-.+|.+.|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 677899999999999998763 225678888888999999999999999999886 45578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
|+..|++.... .|+......++.-|
T Consensus 89 A~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999998765 56555555555433
No 88
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.10 E-value=0.01 Score=45.71 Aligned_cols=88 Identities=13% Similarity=0.040 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLS---------------KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~---------------~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
|..++..+|-++++.|+++....+.+..-. ....|+..+..+++.+|+.+|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345788899999999999999998876521 12458999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCC
Q 023326 188 TQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 188 ~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
.+-.|.+..+|..|+.-....-+
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhcC
Confidence 98888889999999976655544
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.014 Score=51.82 Aligned_cols=150 Identities=13% Similarity=0.074 Sum_probs=114.1
Q ss_pred cCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD-TLLLAFDKDHRADEA 178 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~-~Ll~~~~~~g~~~~A 178 (284)
|...+|++.+. .++...|-+.||-.+-+.|.+..+.+.|+.+|.+-++. .|-.+||- -+-..+-..++.++|
T Consensus 237 gm~r~Aekqlq-----ssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 237 GMPRRAEKQLQ-----SSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred cChhhhHHHHH-----HHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHH
Confidence 45555555443 23556688889999999999999999999999887654 56555554 344556667889999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+++....+.. |.++...-++-.+|...|+.|.|+..++++.+.|+. +..-|+.+--.|.-.+++|.+.--|.+...
T Consensus 310 ~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 310 LQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 99999887754 447777777888899999999999999999999987 556677777777788899988887776654
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
-
T Consensus 387 t 387 (478)
T KOG1129|consen 387 T 387 (478)
T ss_pred h
Confidence 3
No 90
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.09 E-value=0.015 Score=55.52 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+.|-.+-..|-.+|.++.|+..|++-++. .|+ ...||.|-.++-..|++.+|...++.-... .|.-....|-|-.
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgn 362 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGN 362 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 33444444577788888888888887754 454 457888888888888998888888877654 2323444566777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|...|++++|..+|..-. .+.|+- ..++.|-..|-..|++++|...+.+..
T Consensus 363 i~~E~~~~e~A~~ly~~al--~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKAL--EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHhccchHHHHHHHHHH--hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 7777777777777776543 234443 356677777777777777776665544
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.07 E-value=0.039 Score=46.02 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=84.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF-DKDHR--ADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~-~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+...+..+-..|...|++++|+..|+...+.. .-|...+..+-.++ ...|+ .++|.+++++..+.+ |.+..++.
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~ 148 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALM 148 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHH
Confidence 45555555556999999999999999888764 22566777776654 67777 599999999999864 55888899
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
.+-..+...|++++|+..|+++.+. ..|+..-+.
T Consensus 149 ~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 149 LLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 9999999999999999999999766 344554443
No 92
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.054 Score=50.15 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=114.3
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
|.-+|-+ |..-++...|++-++.-.+-. +-|-..|=.|=.+|.-.+...=|+-.|.+-.. ++|.|
T Consensus 367 WTLmGHE------------yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnD 431 (559)
T KOG1155|consen 367 WTLMGHE------------YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPND 431 (559)
T ss_pred HHHhhHH------------HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCc
Confidence 7778888 999999999999999887642 44778899999999999998889999988776 67889
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|.+|-..|-+.+++++|++.|..-...|-. +...|..|-..|-+.++.++|.+.|++..+..
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877744 77899999999999999999999998887755
No 93
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.05 E-value=0.026 Score=52.10 Aligned_cols=113 Identities=6% Similarity=-0.014 Sum_probs=88.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..+.|..+|+.+.. ..|++. ..+...+...++-.+|++++++..+. .+-+....+.-...|.+.++.+.|
T Consensus 182 t~~~~~ai~lle~L~~-----~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRE-----RDPEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred cccHHHHHHHHHHHHh-----cCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3455666777776642 235543 34777788888999999999998864 223566666666778899999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
..+..+.++. .|.+..+|..|..+|.+.|++++|+-.++.|
T Consensus 254 L~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999985 5768889999999999999999999998875
No 94
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.98 E-value=0.046 Score=49.50 Aligned_cols=126 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+..-..++.-+.+.|+.++|.++..+-.+.+..|+..+ +-.+.+-++.+.-.+..++-.... |.+.-.+.+|=.
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tLG~ 336 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTLGR 336 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhC--CCChhHHHHHHH
Confidence 44455788889999999999999999999888887332 334556666666555555554443 335577999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.|.+++.+.+|.+.|+. ....+|+..+|+-+-+++.+.|+.++|.++.++-.
T Consensus 337 L~~k~~~w~kA~~~lea--Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 337 LALKNKLWGKASEALEA--ALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHhhHHHHHHHHHHH--HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999999994 55679999999999999999999999999998765
No 95
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.95 E-value=0.17 Score=42.87 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
.+|..|++++|.+.|++-...-.-| -..||..+.-+..+.|+.+.|+..|..-.+.. |....+.-.|-.-..+.|++
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccc
Confidence 3899999999999999987763222 24578888777789999999999999888764 33455577888888999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
-.|...++.....|. ++..+....|.--.+.|+.+.+.+.=..+.+.+.+
T Consensus 190 ~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 190 APARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred hHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 999999998877766 99999999999999999999988888777777653
No 96
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.088 Score=48.79 Aligned_cols=157 Identities=9% Similarity=0.092 Sum_probs=121.7
Q ss_pred HhcCCchHHHHHHHHHH------------------------------HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDK------------------------------WTAWETEFPLIAAAKALRILRKRGQWLRVIQVA 147 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~------------------------------~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~ 147 (284)
-..+.+.|+.+|+.+.. -...+...-+.|+-++=.-|.-.++.++|...|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YF 353 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYF 353 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHH
Confidence 35677888888887765 011122222333334445566678899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 148 KWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 148 ~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
++-++.+- -....|+.+=+-|...+....|.+-++.-++. .|.|-..|=.|=.+|.-.++..-|+-.|++-.+ ++
T Consensus 354 kRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~k 428 (559)
T KOG1155|consen 354 KRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LK 428 (559)
T ss_pred HHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cC
Confidence 99887632 23467777888899999999999999999885 466999999999999999999999999998544 57
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 228 P-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 228 P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
| |...|.+|-..|.+.++.++|.+.|.....-
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7 7889999999999999999999999876644
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.87 E-value=0.071 Score=51.02 Aligned_cols=133 Identities=11% Similarity=0.055 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.++..+-..|-..|+.++|++..++-++. .|+ +..|..--..+-+.|++++|.+.+++-.+.... |...=+-.+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~--DRyiNsK~aK 270 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA--DRYINSKCAK 270 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh--hHHHHHHHHH
Confidence 35556667788999999999999988876 576 567888888899999999999999999987665 8887788889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC--CHHH---H---HHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP--DEDT---V---RRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P--d~~t---y---~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.++|++++|.+++...-..+..| |..- . .-.-.+|.+.|+...|.+.|....+.+.
T Consensus 271 y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~ 336 (517)
T PF12569_consen 271 YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFD 336 (517)
T ss_pred HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999887766544 2221 1 2234578899999999998887776654
No 98
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.86 E-value=0.029 Score=48.82 Aligned_cols=93 Identities=24% Similarity=0.309 Sum_probs=69.7
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHH
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+.+.++=...-++.|.+-|+.-|..+|+.||+.+-|..-+- ..+|....-.+ | .+-+=+
T Consensus 83 r~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~~F~HY--P----------------~QQ~C~ 142 (406)
T KOG3941|consen 83 RGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQKVFLHY--P----------------QQQNCA 142 (406)
T ss_pred cccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHHHHhhC--c----------------hhhhHH
Confidence 345678888888899999999999999999999887644321 12222222111 1 233448
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
++++++|+..|+.||-.+--.||.++++.|..-
T Consensus 143 I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 143 IKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHhccccccH
Confidence 899999999999999999999999999998754
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.86 E-value=0.047 Score=54.05 Aligned_cols=135 Identities=11% Similarity=0.116 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
++.-|..+-.+|...|++.+|+.+|..+...-.--+.+.|-.+-..|-..|..++|.+.|+..+.. .|.+.-.--+|-
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~La 490 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLA 490 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHH
Confidence 455677888889999999999999999998766667889999999999999999999999999875 455655567788
Q ss_pred HHHHhCCChhHHHHHHHHH--------HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADM--------EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M--------~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.|-+.|+.|+|++++..| +..+..|+...-.-..+.+...|+.++-..+-..|...
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8899999999999999995 34456777777777788889999998866666666543
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.85 E-value=0.071 Score=49.53 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=98.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|..++|+..++.+... .| |+.........+.+.++.++|.+.++.++.. .|.....+-.+-.+|.+.|+..
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 55778999999999998865 45 4555556667789999999999999999986 4545666788889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|+.++++-... ..-|...|..|-.+|...|+..++..-..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999999986544 44588899999999999999999988776664
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.81 E-value=0.0065 Score=40.86 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=22.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
+.|++++|+++|+.+.+.. +-|...+..+...|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555554444331 11333444444444445555555554444444
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.75 E-value=0.14 Score=53.25 Aligned_cols=129 Identities=14% Similarity=0.074 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMI 202 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI 202 (284)
..|..|...|.+.+.+++|-++|+.|.+. +.-....|......+.+..+-+.|++++.+-.+. .|- -+..-.-.+
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHH
Confidence 45668888899999999999999999875 2234456777777777766666666665554432 121 112222333
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..-.++|+.+++..+|+......-+ -..-|+..|+.=.+.|..+.++.+|++..
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 3334445555555555544433111 23345555555555555555555554443
No 103
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.72 E-value=0.056 Score=51.84 Aligned_cols=132 Identities=11% Similarity=0.157 Sum_probs=96.1
Q ss_pred cCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 119 ETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 119 ~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
...|+ ...|+.+-.++-..|++.||.+.|..-+.. .|+ .-..+.|-..+...|.+++|-.+|..-.+. .|.-..
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aa 389 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAA 389 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--Chhhhh
Confidence 34454 467788888888899999999999887654 454 356788888899999999999988877664 333445
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.+|-|-..|-+.|++++|+..+++-. .|+|+-. .|+.+-..|-..|+++.|.+.+.+.
T Consensus 390 a~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA 448 (966)
T KOG4626|consen 390 AHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRA 448 (966)
T ss_pred hhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHH
Confidence 57888888888888888888888743 3566543 6666666677777777766666543
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=96.70 E-value=0.012 Score=56.83 Aligned_cols=71 Identities=14% Similarity=0.099 Sum_probs=54.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|....|..+|+.+..|...+.. |+..|+.++|..+..+..+ -+||..-|..|.+......-+++|
T Consensus 411 lGitksAl~I~Erlemw~~vi~C------------Y~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 411 LGITKSALVIFERLEMWDPVILC------------YLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred cchHHHHHHHHHhHHHHHHHHHH------------HHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 47777788888888888877777 9999988899888888777 378888888888776665556666
Q ss_pred HHHHH
Q 023326 179 ESLWN 183 (284)
Q Consensus 179 ~~l~~ 183 (284)
.++++
T Consensus 477 wElsn 481 (777)
T KOG1128|consen 477 WELSN 481 (777)
T ss_pred HHHhh
Confidence 66643
No 105
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.69 E-value=0.063 Score=51.49 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=94.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.|.++++.|+--|+.-.+-+ +-|.+....+...+-+.|+.|+|..++++-....-+ |.-.-=-.+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k--n~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK--NPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC--CchhHHHHHHHHHhhcchHH
Confidence 999999999999998876543 225677777778888999999999999999876544 44333345566777899999
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 214 IIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
|+..++++++. .||.. .|-.+-..|.+.|+.+.|..-|..+.+
T Consensus 576 al~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 576 ALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 99999999875 77665 566777899999999999888876653
No 106
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.68 E-value=0.16 Score=48.69 Aligned_cols=136 Identities=6% Similarity=-0.056 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 023326 120 TEFPLIAAAKALRILRKRG-----QWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKD--------HRADEAESLWNMI 185 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g-----~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~--------g~~~~A~~l~~~m 185 (284)
...+...|...+.+..... ..++|.++|++..+. .|| ...|..+-.++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3457789999999866532 377999999998876 565 34444433333221 1233344444443
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 186 LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 186 ~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
......+.+...|.++--.+...|++++|...|++..+.. |+...|..+-..|...|+.++|.+.+++-.+-
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3332344466778888666677899999999999988775 78889999999999999999999999876543
No 107
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.66 E-value=0.086 Score=47.49 Aligned_cols=124 Identities=10% Similarity=0.064 Sum_probs=85.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDT---LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~---Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...|++++|.+++++..+.. +-|...+.. +.......+..+.+.+.+.. .....|.....+..+-..+...|+
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC
Confidence 667899999999999988762 223344442 11111224555555555554 122234344455566678899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+++|++.+++..+.. ..+...+..+-..|...|++++|...+++..+.+.
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~ 179 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD 179 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence 999999999988763 22456777888899999999999999998877654
No 108
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.58 E-value=0.035 Score=49.27 Aligned_cols=127 Identities=9% Similarity=0.029 Sum_probs=104.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+=+.|.+.|...+|...|+.-++. .|-+.||-.|-++|-+..+...|..++.+-++. .|.++.-..-+-..+-..+
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 334599999999999999987776 566778888999999999999999999988775 5656665567778888899
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.++|.+++++..+.. .-++....++-.+|.-.++.|.|++++.++..-..
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 9999999999977653 23566777888889999999999999999876644
No 109
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.58 E-value=0.08 Score=42.57 Aligned_cols=114 Identities=11% Similarity=0.075 Sum_probs=79.7
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 141 LRVIQVAKWML-SKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 141 ~~A~~l~~~M~-~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+...+..+. ..+..-....|..+...+...|++++|...|++.+.....+. ...+|..+-..|.+.|++++|++.+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33444444443 222222356777888888889999999999999987643332 2357888999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHH-------HcCCHHHHHHHHHHh
Q 023326 219 ADMEELGVRP-DEDTVRRIASAFQ-------RVGQDDKQKLVLKKY 256 (284)
Q Consensus 219 ~~M~~~g~~P-d~~ty~~ll~a~~-------~~G~~d~a~~l~~~m 256 (284)
++.... .| ...++..+...+. ..|+++.|...+++-
T Consensus 96 ~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 96 FQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 987754 33 3445666666666 788888666666543
No 110
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.56 E-value=0.014 Score=48.98 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPLIAAAKALRILRKR----------------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~----------------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~ 170 (284)
=++.+|..|.+.+..-|+.+|+.||..+=+. .+.+-|++|+++|...|+.||..|+..|++.|+
T Consensus 70 FI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG 149 (228)
T PF06239_consen 70 FIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFG 149 (228)
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhc
Confidence 4556777788888888999999888876542 244678888888888888888888888888887
Q ss_pred hcCC
Q 023326 171 KDHR 174 (284)
Q Consensus 171 ~~g~ 174 (284)
+.+.
T Consensus 150 ~~s~ 153 (228)
T PF06239_consen 150 RKSH 153 (228)
T ss_pred cccH
Confidence 7664
No 111
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.53 E-value=0.12 Score=41.70 Aligned_cols=86 Identities=17% Similarity=0.225 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRR 235 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ 235 (284)
....|..+-..+...|++++|...|++.++..-.+++ ...|..+...|.+.|++++|+..+++.... .| +...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 3456778888888999999999999999876543322 467899999999999999999999987764 44 3445666
Q ss_pred HHHHHHHcCC
Q 023326 236 IASAFQRVGQ 245 (284)
Q Consensus 236 ll~a~~~~G~ 245 (284)
+...|...|+
T Consensus 112 lg~~~~~~g~ 121 (172)
T PRK02603 112 IAVIYHKRGE 121 (172)
T ss_pred HHHHHHHcCC
Confidence 6667777766
No 112
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.51 E-value=0.19 Score=38.30 Aligned_cols=104 Identities=15% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~ 210 (284)
+-..|+.++|+.+|++-...|.... ...+-.+-..+-..|++++|..++++.....-. +.+....-.+--++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 6678999999999999999887665 345666777788899999999999999876322 1122222333347788899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.++|++.+-.... ++..-|.--|..|+
T Consensus 91 ~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 91 PKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 9999998876543 23335555555443
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.48 E-value=0.056 Score=42.45 Aligned_cols=88 Identities=9% Similarity=0.028 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
+-..+...|++++|...|++.......|+. ...-.|-..+...|++++|...++..... +.....+...-..|.+
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~ 130 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLA 130 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHH
Confidence 335688899999999999999987633332 34445667788899999999999774332 2244557778899999
Q ss_pred CCChhHHHHHHHH
Q 023326 208 HDMPNKIIEVFAD 220 (284)
Q Consensus 208 ~G~~~~A~~l~~~ 220 (284)
.|+.++|...|++
T Consensus 131 ~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 131 QGDYDEARAAYQK 143 (145)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999875
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.45 E-value=0.14 Score=50.87 Aligned_cols=129 Identities=9% Similarity=0.030 Sum_probs=96.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~ 176 (284)
.|..++|+.+++... ...|+-. ....+...+.+.+++++|+..+++.... .|+ ....+.+=.++.+.|+.+
T Consensus 99 ~g~~~ea~~~l~~~~-----~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~~~ 171 (694)
T PRK15179 99 AHRSDEGLAVWRGIH-----QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQSE 171 (694)
T ss_pred cCCcHHHHHHHHHHH-----hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcchH
Confidence 466667776666553 3445544 4456777799999999999999999876 455 455566667778899999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+|..+|+.+... .|.+..++..+-.++-..|+.++|...|++-.+. ..|-..-|+.++
T Consensus 172 ~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 172 QADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 999999999983 3557888999999999999999999999986543 233444544443
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.40 E-value=0.076 Score=48.46 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=75.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~ 245 (284)
......|++++|..+|++.++. .|.+...|..+-.+|.+.|++++|+..+++..+. .| +...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCC
Confidence 3455789999999999999986 4558888999999999999999999999998775 44 56678888889999999
Q ss_pred HHHHHHHHHHhHHh
Q 023326 246 DDKQKLVLKKYLSK 259 (284)
Q Consensus 246 ~d~a~~l~~~m~~~ 259 (284)
+++|...|++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876643
No 116
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.37 E-value=0.024 Score=38.03 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=52.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
.+.|++++|.++|+++.+.. |.+...+-.+...|.+.|++++|.++++++... .||...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 46799999999999999874 558888889999999999999999999998766 56655665554
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.33 E-value=0.025 Score=37.65 Aligned_cols=51 Identities=8% Similarity=0.091 Sum_probs=23.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+.+.|++++|..+|+++++.. |.+...|..+-..+.+.|++++|..+|++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444432 334444444444444444444444444444
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.33 E-value=0.35 Score=41.54 Aligned_cols=126 Identities=10% Similarity=-0.018 Sum_probs=98.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
.=..+...|+-+.+..+....... ..-|....+.+.....+.|++.+|...+.+.... .|+|..+||.+=-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhhHHHHHHHHcc
Confidence 334466677777777766654432 2335566777888899999999999999999874 5779999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++++|..-|.+-.+.-.. +...+|.|.-.|.-.|+.+.|..++..-...
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999887665322 4556778888888899999999998766543
No 119
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.29 E-value=0.13 Score=44.92 Aligned_cols=98 Identities=8% Similarity=0.044 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM----GTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFS 199 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn 199 (284)
..|...+..+.+.|++++|+..|+.+.+. .|+. ..+--|-..|...|++++|...|..+++.+-. +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555556666666666666553 1221 12333444455566666666666666654322 11112222
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
-+...|-..|+.++|.++|++..+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444556666666666555443
No 120
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.23 E-value=0.91 Score=41.34 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=99.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 023326 95 VRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR 174 (284)
Q Consensus 95 ~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~ 174 (284)
.+...|....|++.... + +...+-.+..|....++--+.|+.+.|=+.+.+..+.--.++...+-+.-......|+
T Consensus 93 ~~l~eG~~~qAEkl~~r---n-ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d 168 (400)
T COG3071 93 LKLFEGDFQQAEKLLRR---N-AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRD 168 (400)
T ss_pred HHHhcCcHHHHHHHHHH---h-hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCC
Confidence 33344555555544433 2 2223334556666666777777777777777777666445566666677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-------------------------
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD------------------------- 229 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd------------------------- 229 (284)
...|..=++++.+++-. +..+-..+...|.+.|+++....++.+|.+.|+--|
T Consensus 169 ~~aA~~~v~~ll~~~pr--~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 169 YPAARENVDQLLEMTPR--HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred chhHHHHHHHHHHhCcC--ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 77777777777776433 555577777777777777777777777766654322
Q ss_pred ----------------HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 230 ----------------EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 230 ----------------~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...-.+++.-+.++|..|+|.++..+-.++
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 222344455566778888888777665544
No 121
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.33 Score=45.05 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred CCHHHHHHHHHH-HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 193 ISKRLFSRMISL-YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 193 ~~~~tyn~lI~~-~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|+.+-|..||.. +-+.|++++|++++++.... +.-|......|++.|...|.-| +.++-++++
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d-~key~~kle 720 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD-AKEYADKLE 720 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh-HHHHHHHHH
Confidence 488888888854 45678888888888887544 5557778888888888888754 555555544
No 122
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.79 Score=42.66 Aligned_cols=153 Identities=11% Similarity=0.036 Sum_probs=112.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+.+++|...|-.+.. +..-++...-.+-..|--..+..+|++++.+.. .+.| |......|-..|-+.|+-.+
T Consensus 537 ~~~ldeald~f~klh~----il~nn~evl~qianiye~led~aqaie~~~q~~--slip~dp~ilskl~dlydqegdksq 610 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHA----ILLNNAEVLVQIANIYELLEDPAQAIELLMQAN--SLIPNDPAILSKLADLYDQEGDKSQ 610 (840)
T ss_pred hcCHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc--ccCCCCHHHHHHHHHHhhcccchhh
Confidence 3555556555554432 112234444455666777788888888875543 4444 67889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF-QRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~-~~~G~~d~a~~l~~~m 256 (284)
|.+.+-.--. ..|.+..|---|-.-|....-.++|+..|++ ..-++|+..-|-.+|..| .+.|++++|..++...
T Consensus 611 afq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ek--aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 611 AFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEK--AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred hhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHH--HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 9887543222 2366888877788888888889999999987 345899999999999765 5789999999999999
Q ss_pred HHhcC
Q 023326 257 LSKWK 261 (284)
Q Consensus 257 ~~~~~ 261 (284)
.+++.
T Consensus 687 hrkfp 691 (840)
T KOG2003|consen 687 HRKFP 691 (840)
T ss_pred HHhCc
Confidence 88865
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.20 E-value=0.26 Score=51.37 Aligned_cols=130 Identities=12% Similarity=0.066 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD-TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~-~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...|...+..+.++.+-+.|.+++.+-++.--+-.++-+- -....--+.|+.+.++.+|+.++..+-+ -.-.|+..|
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYi 1641 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYI 1641 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc--chhHHHHHH
Confidence 3455666677999999999999998877652222233222 2223335789999999999999998755 344599999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
..-.++|+.+.+.++|++....++.|--. -|.-.|..=-..|+-..++.+-.+
T Consensus 1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 99999999999999999999999887544 778888777777776555554433
No 124
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.09 E-value=0.21 Score=43.58 Aligned_cols=103 Identities=16% Similarity=0.187 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC-CHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRP-DEDTVRR 235 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~P-d~~ty~~ 235 (284)
...|..-+..+.+.|++++|...|+.+++.+-.. .....+--+-..|...|++++|...|+.+...- -.| ....+--
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4567777777777899999999999999886432 113456677888999999999999999997642 111 2233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+...+...|+.++|.++|+...+.|.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 55667799999999999999998875
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.99 E-value=0.52 Score=44.70 Aligned_cols=133 Identities=11% Similarity=0.101 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
+|-..|..-.+..-++.|..+|.+..+.+..+ .++.++++|.-+|. ++..-|.++|+-=...... +..--+..+.-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 44466676777777899999999999998877 88899999988876 6888899999865555432 33334777888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.+.|+-..|..+|++....++.||.. .|..+|+-=...|++..+.++-+++...+.
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 889999999999999999887777664 899999999999999999999888877665
No 126
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=95.98 E-value=0.13 Score=51.08 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=104.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKG--QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g--~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
++-++.+....+....+..-+.+.. +.-++..|.-+-.+|-..|.+++|..+|..+....... +...|--+-..|-.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYME 461 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHH
Confidence 3344555555555556666666666 44467889999999999999999999999999877665 67789999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCccccceeeeecccccc
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWYE 279 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~~~g~~~~~~~~~~~~ 279 (284)
.|..++|++.|+..... .||.. .=-+|-.-+-+.|+.|+|.+.++.|. +.+|. .++..+|-+
T Consensus 462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~------~~D~~--~~e~~a~~~ 524 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII------NPDGR--NAEACAWEP 524 (895)
T ss_pred HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc------CCCcc--chhhccccH
Confidence 99999999999997655 55443 33344556789999999999999887 22332 455566654
No 127
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.31 Score=45.58 Aligned_cols=131 Identities=12% Similarity=0.106 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCH--H
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS----ISK--R 196 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~--~ 196 (284)
++++|-.+=.+.-+.+++++++..|++-++. ++-....||-.-..+...++++.|.+.|+.-++..-.. .+. .
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl 505 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL 505 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence 5666666666677778888888888887765 33345677777777888888888888888776542220 011 1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+--.++-.= -.+++..|+.++++-.+..-+ -...|.+|-.--.+.|+.++|.++|++-
T Consensus 506 V~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 506 VHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 112222211 237888888888776544322 3457888888888889999999998753
No 128
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.85 E-value=0.22 Score=39.81 Aligned_cols=86 Identities=9% Similarity=-0.024 Sum_probs=66.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|++++|..+|+-+..- .| +..-|-.|=..|-..|++++|...|....... |.|...+-.+-.+|...|+.+
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHH
Confidence 88889999999999988765 34 34455556566666789999999998888765 457777777888888899999
Q ss_pred HHHHHHHHHHH
Q 023326 213 KIIEVFADMEE 223 (284)
Q Consensus 213 ~A~~l~~~M~~ 223 (284)
.|.+.|+.-..
T Consensus 121 ~A~~aF~~Ai~ 131 (157)
T PRK15363 121 YAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHH
Confidence 99988886443
No 129
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.78 E-value=0.32 Score=37.96 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=68.8
Q ss_pred HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC-------CH-------------HHHHHHHHHHHhCCChhHHH
Q 023326 159 MGTYDTLLLA---FDKDHRADEAESLWNMILHTQTRSI-------SK-------------RLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 159 ~~ty~~Ll~~---~~~~g~~~~A~~l~~~m~~~~~~~~-------~~-------------~tyn~lI~~~~~~G~~~~A~ 215 (284)
+..|-.++.. ....++.+.+...+.+....+--+. +. .....++..+...|++++|+
T Consensus 3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence 3445555432 3456777888887777766543211 11 22467777888899999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 216 EVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 216 ~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.+.+.... .-|...|..+|.+|...|+...|.++|+.+.+.
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 9999987663 238889999999999999999999999988643
No 130
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.77 E-value=0.051 Score=36.12 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=47.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..+.+.|++++|+..|++.++.. | +...+..+-..+.+.|++++|..+|++.++.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35889999999999999999875 5 5678888888899999999999999999875
No 131
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.76 E-value=0.61 Score=44.72 Aligned_cols=133 Identities=11% Similarity=0.078 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSK----G----------QGATMG--TYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g----------~~p~~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..|+.+-..|....+.+-..+++..+... | -.|... ++.-|-..|...|++++|.++.++-++.
T Consensus 144 slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 144 SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH 223 (517)
T ss_pred hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 34555555566555566666666665532 1 124443 4455566678899999999999998886
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|..+..|.+--..|-+.|++++|.+.+++-+..... |-+.-+-....+-++|++++|.+++....+.-
T Consensus 224 --tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 224 --TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 4656888999999999999999999999998777544 77788888889999999999999998876554
No 132
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.71 E-value=0.085 Score=46.47 Aligned_cols=98 Identities=6% Similarity=0.086 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
.+|..+|...-+.+.++.|+.+|.+..+.+.....+....++|.- ...++.+.|.++|+..... +.-+..-+...|+-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~-~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEY-YCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHH-HTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998654332344444555543 3357888899999997755 45577788889999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.+.|+.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999987654
No 133
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.67 E-value=0.094 Score=52.47 Aligned_cols=127 Identities=6% Similarity=0.048 Sum_probs=94.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..++..|++.+|..+|.+..+... -+.-+|-.|-+.|...|++..|.+.|+...++.....+..+.+.|-.++-+.|++
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~ 732 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL 732 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence 448889999999999999998764 2334688889999999999999999988877766656788889999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------HHcCCHHHHHHHHHHhHHh
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAF------------------QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~------------------~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|.+.+..-...-..=..+-||..+-.. ...+.++.|.++|.+|...
T Consensus 733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999876654443332334555544322 1224566677777777654
No 134
>PLN02789 farnesyltranstransferase
Probab=95.66 E-value=0.99 Score=40.57 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=76.4
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRG-QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+.+.| .+++++..++.+.+..- -+..+|+-.--.+.+.|. .+++..+++.+++.. |.|..+|+..--.+.+.|+
T Consensus 81 L~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 81 LEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhh
Confidence 34456 57999999999987643 244566655444555555 367788898998865 4488899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
++++++.++++.+.... |...|+-....+.+.
T Consensus 158 ~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 158 WEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 99999999999887655 444555544445444
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=95.65 E-value=0.32 Score=38.85 Aligned_cols=91 Identities=9% Similarity=0.040 Sum_probs=70.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
..+...|++++|+++|+-+... .|.+..-|-.|-..+-..|++++|++.|........ =|...|-.+-.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3356778899999998888764 344666677788888888899999998888777653 3666777777888888999
Q ss_pred HHHHHHHHHhHHhc
Q 023326 247 DKQKLVLKKYLSKW 260 (284)
Q Consensus 247 d~a~~l~~~m~~~~ 260 (284)
+.|.+-|+......
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888776554
No 136
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.60 E-value=0.041 Score=38.03 Aligned_cols=64 Identities=16% Similarity=0.380 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEE----LGV-RPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~----~g~-~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+|+.+-..|...|++++|++.|++..+ .|- .|+ ..++..+-..|...|++++|.+++++-.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34577777888888888888888877543 231 233 44677777778888888888888776543
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=1.3 Score=38.11 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=88.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+-..|++++|+++++.+++.. +-|.++|--=|...-..|.--+|.+-+++..+.-. .|...|--+-..|...|++++
T Consensus 96 lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHHHH
Confidence 445789999999999999886 44677777666666666666678877787777643 489999999999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHH---HHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPD-EDTVRRIASAF---QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd-~~ty~~ll~a~---~~~G~~d~a~~l~~~m~~~ 259 (284)
|.-.+++|.-. +|. ..-|..+-..+ +...+.+-+.+++++-.+-
T Consensus 173 A~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 173 AAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999998754 453 33334444433 3444566677777766544
No 138
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.54 E-value=2.6 Score=41.13 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=96.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.|..++-..+|++.... ++-..+.|.-....+-..|++..|..++.+..+.. |.+...|-.-+..-..+.++|+|..
T Consensus 563 hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~ 639 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARD 639 (913)
T ss_pred cCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHH
Confidence 46667777777776654 22233445555555667899999999999988864 4478889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCcc
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHF 265 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~~ 265 (284)
+|.+-.. ..|+...|.--+.----.|++|+|.+++++-.+.|...|.
T Consensus 640 llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K 686 (913)
T KOG0495|consen 640 LLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHK 686 (913)
T ss_pred HHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH
Confidence 9998654 6788888887777777889999999999999988876654
No 139
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=95.45 E-value=0.4 Score=42.16 Aligned_cols=161 Identities=10% Similarity=0.083 Sum_probs=89.9
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEF--PLIAAAKALRILRKRGQWLRVIQVAKWMLS----KGQGAT-MGTYDTLLLAFD 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p--~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~----~g~~p~-~~ty~~Ll~~~~ 170 (284)
..+...+|...|....++......+ -...|..+...|.+. ++++|+..+++-.+ .|-... ...+..+-..|-
T Consensus 47 ~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 47 LAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYE 125 (282)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred HHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3455666655554443322111111 112333333334333 66677666665432 231111 234555555566
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-----CCCHH-HHHHHHHH
Q 023326 171 KD-HRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-----RPDED-TVRRIASA 239 (284)
Q Consensus 171 ~~-g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-----~Pd~~-ty~~ll~a 239 (284)
+. |++++|.+.|.+-.+.+.... ....+.-+...+.+.|++++|+++|++....-. +.+.. .|-..+-.
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~ 205 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC 205 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 66 899999999888766543321 124467888999999999999999999876533 22332 22233335
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
+...|+...|.+.+++....
T Consensus 206 ~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 206 HLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHTT-HHHHHHHHHHHGTT
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 55678999999999887754
No 140
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.30 E-value=1.1 Score=39.81 Aligned_cols=86 Identities=9% Similarity=0.243 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhCCCh
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--D----HRADEAESLWNMILHTQTR--SISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--~----g~~~~A~~l~~~m~~~~~~--~~~~~tyn~lI~~~~~~G~~ 211 (284)
+++.+.+++.|++.|++-+.++|-+..-.... . ..+..|..+++.|.+.+.- .++-.++.+|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44555566666666666665555543222222 1 1344466666666555432 1233335555444 22222
Q ss_pred ----hHHHHHHHHHHHCCCC
Q 023326 212 ----NKIIEVFADMEELGVR 227 (284)
Q Consensus 212 ----~~A~~l~~~M~~~g~~ 227 (284)
++++.+|+.+.+.|+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 3445555555555544
No 141
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.27 E-value=0.34 Score=43.55 Aligned_cols=111 Identities=11% Similarity=0.028 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
.+.+..|.-+...|+...|.++..+.+ .|+-.-|-..|.++++.+++++-+++... -+ +..-|-..+..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kK--sPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----KK--SPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CC--CCCChHHHHHH
Confidence 456677777888888888876654442 47888888999999999999886665432 12 22448888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+.+.|+.++|..+... .++..-+..|.++|++.+|.+.--+.
T Consensus 247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8899998888888777 23356677788888888887664443
No 142
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.25 E-value=0.16 Score=34.00 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD-MPNKIIEVFAD 220 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G-~~~~A~~l~~~ 220 (284)
..+|..+=..+.+.|++++|...|++.++.. |.+...|..+-.+|.+.| ++++|++.|++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3444555555555555555555555555542 334555555555555555 45555555554
No 143
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.24 E-value=0.67 Score=43.37 Aligned_cols=108 Identities=7% Similarity=0.006 Sum_probs=91.0
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 116 TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 116 ~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
++.|..|..-.+...|..=.+.+.++.+..+++..++-+ +-|..+|.---..=...|+.+.|..+|+--++........
T Consensus 429 ~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 429 NAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 577888999999999999999999999999999988764 2366777766666667799999999999988887665567
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..|-+.|.--...|.+++|..+++.+.+.
T Consensus 508 llwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 508 LLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 77999999999999999999999998765
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.22 E-value=0.058 Score=37.25 Aligned_cols=61 Identities=15% Similarity=0.201 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTR------SISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
.+|+.+-..|...|++++|...|++.++. .. +....+++-|-..|...|++++|++.+++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45666666677777777777777666544 21 111445677777777777777777777653
No 145
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.16 E-value=0.28 Score=42.98 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE-----LGVRPDEDTVR 234 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-----~g~~Pd~~ty~ 234 (284)
-++..++..+...|+++.+.+.+++++.. .|.+...|-.||.+|.+.|+...|+..|+.+.. .|+.|-..+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 46677888888899999999999999986 466889999999999999999999999998754 79999888776
Q ss_pred HHHHH
Q 023326 235 RIASA 239 (284)
Q Consensus 235 ~ll~a 239 (284)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66665
No 146
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=2.1 Score=37.27 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=92.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
...+.+..+++-|.+.++.|.+-. +-.|.+-|-.++.+ .+.+.+|.-+|++|-++. +|+.-+-|-+..++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~--~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT--PPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc--CCChHHHccHHHHHH
Confidence 334777788999999999998753 45677766666544 457899999999998863 348888999999999
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhHHh
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD-DKQKLVLKKYLSK 259 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~-d~a~~l~~~m~~~ 259 (284)
..|++++|..++++.....-. |..|...+|-.--..|.. +.-.+.+.+++..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999998877543 566666666666667755 3355566666544
No 147
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.03 E-value=0.13 Score=51.50 Aligned_cols=120 Identities=12% Similarity=0.173 Sum_probs=97.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.+..++|+++|...++.. +-|.+.-|-+=-.++..|++.+|..||.+..+.... ..-+|--+-..|.-.|++-.|++
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~--~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD--FEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh--CCceeeeHHHHHHHHHHHHHHHH
Confidence 456789999999888753 347788888888899999999999999999988763 33347788899999999999999
Q ss_pred HHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 217 VFADM-EELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 217 l~~~M-~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|+.. +..+-.-+......|-.++-+.|.+.+|.+.+-.-.+.
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99975 44555567778899999999999999998877655543
No 148
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.01 E-value=0.16 Score=49.80 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
..|++-...++|.+|+.+++.+..+.. -..-|.-+-+-|+..|+++.|+++|.+- + .|+-.|..|.++
T Consensus 737 kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~--------~--~~~dai~my~k~ 804 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA--------D--LFKDAIDMYGKA 804 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc--------c--hhHHHHHHHhcc
Confidence 556666778899999999998887643 2345788888999999999999998752 1 167788999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
|++++|.++-.+. .|-......|-+-..-+-+.|.+.+|++++
T Consensus 805 ~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 805 GKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred ccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 9999999976653 344444445554444455555555555443
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.93 E-value=1.2 Score=45.36 Aligned_cols=131 Identities=11% Similarity=0.144 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH------------------H
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESL------------------W 182 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l------------------~ 182 (284)
.+...+..++..|...|++++|.++.+.-.+. .-.+....|..+ .+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHH
Confidence 34555667777788999999999998865543 122233333333 34555555554444 2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 183 NMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 183 ~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+. +.+...+-.+-.+|-+.|+.++|..+++++.+.. .-|....|.+-..|+.. ++++|.+++.+....
T Consensus 107 ~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 107 DKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 222221 1133456678888888899999999999998876 33777888888888888 999999988877655
No 150
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.83 E-value=0.86 Score=45.56 Aligned_cols=112 Identities=14% Similarity=0.081 Sum_probs=63.1
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 125 IAAAKALRILR--KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 125 ~~y~~~i~~~~--~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
..|..+++++. +.|+.++|..+++.....+.. |..|.-++-..|-..+..++|..+|+...+.+ | +..--..+.
T Consensus 42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P-~eell~~lF 117 (932)
T KOG2053|consen 42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--P-SEELLYHLF 117 (932)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--C-cHHHHHHHH
Confidence 35555565543 456666666666665544433 56666666666666666666666666666543 3 344455566
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.+|.|.+++.+..++--+|-. .+.-+.+.|.++++-+.
T Consensus 118 mayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 666666655554444333322 12225556666666554
No 151
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=3.9 Score=39.10 Aligned_cols=120 Identities=14% Similarity=0.059 Sum_probs=69.9
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCCHHHHHHHHHHHHhC
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHT----QTR-SISKRLFSRMISLYDHH 208 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~-~~~~~tyn~lI~~~~~~ 208 (284)
.+.+.++.|.+.|.+-. ++.| |...++-+=-..-+.+.+.+|..+|..-+.. +-. +.-..+++-|-.+|.+.
T Consensus 391 ~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHhccHHHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 34455556665555443 3333 3344444433344455666666666554311 000 00123456677778888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+++++|+..|++-... ..-|..||.++-..|...|++|.|...|.+-.
T Consensus 469 ~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred hhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 8888888888775544 23377788888888888888888877776543
No 152
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.75 E-value=0.16 Score=34.38 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=25.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
|.+.+++++|.++++.++.. .|.+...|...-..|.+.|++++|.+.|++..
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44445555555555555443 23344444444455555555555555555444
No 153
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.42 Score=45.63 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=57.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH--HHHHH--hCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM--ISLYD--HHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l--I~~~~--~~G 209 (284)
+.++|++++|.+..+.++..+ +-|...+..=+-++.+.+.+++|..+.+. +. ...+++.. =.+|| +.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk----~~---~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK----NG---ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh----cc---hhhhcchhhHHHHHHHHHcc
Confidence 556666777777777666554 22233344444445566666666643321 11 11112222 44444 456
Q ss_pred ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.|+|++.++ |..++.. +...=--.|-+.|++|+|..++..+.+.
T Consensus 94 k~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 94 KLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 6777766665 3333332 3332233455667777777777666433
No 154
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.54 E-value=0.3 Score=32.99 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~ 190 (284)
..|.+.+++++|+++++.+.+.+- -+...+...-..+.+.|++++|.+.++...+..-
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 468999999999999999998732 2556666677778999999999999999997643
No 155
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.51 E-value=0.99 Score=42.11 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM----GTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
...+...++.+=.+|.+.|++++|+..|++-++. .||. .+|..+-.+|.+.|++++|.+.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3346777788888899999999999999987765 4553 56899999999999999999999998875
No 156
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.39 E-value=3.1 Score=40.40 Aligned_cols=83 Identities=13% Similarity=0.020 Sum_probs=62.4
Q ss_pred CCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH-hcCCCcccc
Q 023326 192 SISKRL--FSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS-KWKYIHFKG 267 (284)
Q Consensus 192 ~~~~~t--yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~-~~~~~~~~g 267 (284)
||.... +--++..|-+.|+++.|+++++.-. +-.|+.+ -|.+=-+.+.+.|.++.|...+++-.+ .-..+.|||
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AI--dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI--DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 444444 4567899999999999999999754 4478776 555556889999999999999998873 345688888
Q ss_pred cee--eeeccc
Q 023326 268 ERV--RVRRDA 276 (284)
Q Consensus 268 ~~~--~~~~~~ 276 (284)
+++ -+++++
T Consensus 444 KcAKYmLrAn~ 454 (700)
T KOG1156|consen 444 KCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHccc
Confidence 887 344443
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.34 E-value=1.7 Score=44.50 Aligned_cols=132 Identities=8% Similarity=-0.022 Sum_probs=89.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--CCCH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG--Q---GATMGTYDTLLLAFDKDHRADEAESLWNMILHT----QTR--SISK 195 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~---~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~--~~~~ 195 (284)
.+.+-..+...|++++|...+++..... . ..-..+++.+-..+...|++++|...+++..+. +.. +...
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 3444455778999999999999877431 1 111345556666778899999999998776542 211 1123
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELG--VRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..+..+-..+...|++++|...+++..... ..+. ...+..+...+...|+.+.|.+.+++...
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556667777899999999998865431 1222 33455556678899999999999988754
No 158
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.69 Score=43.98 Aligned_cols=116 Identities=13% Similarity=0.090 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGA----TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p----~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
|+..++=+=....+.+.+.+|...|+.-+.. .+.+ -.-+++.|=++|-+.+.+++|...++.-+.. .|.+..
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~ 490 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDAS 490 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchh
Confidence 3444443333356678899999999876521 1111 2346788888899999999999999998876 455999
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
+|.++--.|...|+++.|.+-|.+ ..++.||-.+-..+|.-+..
T Consensus 491 ~~asig~iy~llgnld~Aid~fhK--aL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHK--ALALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHH--HHhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999997 56789999988888886543
No 159
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.29 E-value=0.53 Score=44.76 Aligned_cols=113 Identities=10% Similarity=0.066 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 140 WLRVIQVAKWMLS-KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 140 ~~~A~~l~~~M~~-~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
+.+..++|-++.. .+-.+|...++.|=-.|--.|.+++|...|+..+.. +|.|...||-|=..++...+.++|++.|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 4566677766654 454455556666666688899999999999999874 6879999999999999999999999999
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 219 ADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 219 ~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.+-.+. +|+.+ .-..|--.|...|.+++|.+.|=..
T Consensus 488 ~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 488 NRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 987654 77655 4444555788999999998877543
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.25 E-value=0.33 Score=32.43 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHhHH
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVG-QDDKQKLVLKKYLS 258 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~ 258 (284)
+..+|..+-..+.+.|++++|+..|++..+. .| +...|..+-.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567899999999999999999999998776 35 5557888888899999 79999999987654
No 161
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=3.8 Score=36.44 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-
Q 023326 139 QWLRVIQVAKWMLSKG---QGATMGTYDTLLLAFDKDHR----ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM- 210 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g---~~p~~~ty~~Ll~~~~~~g~----~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~- 210 (284)
...+|..+|+.|++.- -.++-+++.+||.. ..++ .+.++.+|+.|.+.|....|..-+-+-|-+++..-.
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 4668999999999874 34677889999877 3333 466888899999988875455444444444444322
Q ss_pred --hhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCC---HHHHHHHHHHhHHhcCCC
Q 023326 211 --PNKIIEVFADMEELGVRPDEDTVRRIAS-AFQRVGQ---DDKQKLVLKKYLSKWKYI 263 (284)
Q Consensus 211 --~~~A~~l~~~M~~~g~~Pd~~ty~~ll~-a~~~~G~---~d~a~~l~~~m~~~~~~~ 263 (284)
..++.++++.+++.|+++....|.++-- ++...+. ++...++.+.+.++-+++
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHHHHHhhCcccC
Confidence 3478899999999999998888776643 3333333 444555555665554443
No 162
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=3.7 Score=38.75 Aligned_cols=127 Identities=8% Similarity=-0.041 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
|-.+-..|.+..+-++-+..|++-.+.. -.||++..-.=| +--.+++++|..=|++-++. .|.+...|--+-.+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm--~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~ 438 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQM--RFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCAL 438 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHH--HHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHH
Confidence 7777778999999999999999877654 345554433333 33346788888888888764 566788888888888
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
-|.+.+++++..|++.+.. +.--...|+..-..+...+++|+|.+.|+.-.+
T Consensus 439 Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 8999999999999998765 222344777788889999999999999987663
No 163
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.17 E-value=4.2 Score=38.34 Aligned_cols=117 Identities=13% Similarity=0.162 Sum_probs=72.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
..|++..|.++|+.-.+. .|+...|++.|+-=.+-+.++.|..+++..+-. .| ++.+|--...---++|++.-|.
T Consensus 153 ~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP-~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HP-KVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cc-cHHHHHHHHHHHHhcCcHHHHH
Confidence 356777777777654433 677777777777777777777777777777643 34 7777777777777777777777
Q ss_pred HHHHHHHH-CCCCCCHHHHHHHHHHHH----HcCCHHHHHHHHHHhHHhc
Q 023326 216 EVFADMEE-LGVRPDEDTVRRIASAFQ----RVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 216 ~l~~~M~~-~g~~Pd~~ty~~ll~a~~----~~G~~d~a~~l~~~m~~~~ 260 (284)
.+|..-.+ .| |...-..|+.+++ ++..++.|.-+|....+++
T Consensus 228 ~VyerAie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 228 SVYERAIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77765332 22 2333333444443 4455566666665555543
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.03 E-value=1.1 Score=39.43 Aligned_cols=126 Identities=13% Similarity=0.263 Sum_probs=71.1
Q ss_pred HHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK----GQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISL 204 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~----g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~ 204 (284)
|...|++++|.+.|...... +-... ...|......| +..++++|.+.+++..+.+.... ....+.-+-..
T Consensus 45 fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ 123 (282)
T PF14938_consen 45 FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEI 123 (282)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 66666666666666554321 11111 23344433333 33366666666666554433211 12345555566
Q ss_pred HHhC-CChhHHHHHHHHHH----HCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 205 YDHH-DMPNKIIEVFADME----ELGVRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 205 ~~~~-G~~~~A~~l~~~M~----~~g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|-.. |++++|++.|++-. ..| .+. ...+.-+...+.+.|++++|.++|++......
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 6666 88999999888743 344 222 23567777889999999999999999877543
No 165
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.91 Score=41.05 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=84.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHHhCCC
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI-SLYDHHDM 210 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI-~~~~~~G~ 210 (284)
+.+.-..++++.+-.++....-=..-|.+-|| +-.+.+..|...+|+++|-......++ |..+|-+|+ ..|.++|+
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik--n~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK--NKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh--hhHHHHHHHHHHHHhcCC
Confidence 33444556777777777666544444555554 567788889999999999877766655 677776555 78899999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHhHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+-|.+++-+|...+ +.++.--|| .-|-+++++=-|-+.|+++..
T Consensus 444 P~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~ 489 (557)
T KOG3785|consen 444 PQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEI 489 (557)
T ss_pred chHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc
Confidence 999998887775332 445555555 568888888888888877653
No 166
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.99 E-value=3.8 Score=38.88 Aligned_cols=133 Identities=8% Similarity=-0.000 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc--CCCCCCHH
Q 023326 124 LIAAAKALRILRKR----GQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRADEAESLWNMILHT--QTRSISKR 196 (284)
Q Consensus 124 ~~~y~~~i~~~~~~----g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~--~~~~~~~~ 196 (284)
...|+.++..++.. ...+.|.++++++.+. -||...|.-.-.- +...|++++|.+.|+..... ..+.....
T Consensus 229 LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l 306 (468)
T PF10300_consen 229 LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHL 306 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHH
Confidence 44566666655554 5688999999999976 7887766544433 45679999999999976532 11222233
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCH-------HHHHHHHHHhHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA-FQRVGQD-------DKQKLVLKKYLSK 259 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a-~~~~G~~-------d~a~~l~~~m~~~ 259 (284)
.|--+.-.+.-.+++++|.+.|..+.+.. .-...+|.-+.-+ +...|+. ++|.++|.+...-
T Consensus 307 ~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 307 CYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 34445555788899999999999998753 1123344444333 3466777 8888888876643
No 167
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.98 E-value=1.8 Score=33.49 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR 174 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~ 174 (284)
.....+|..+.+.+........++.+...|. .+...+|.+|..|++...
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~ 56 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP 56 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH
Confidence 3445778888888999999999999988873 677789999999988643
No 168
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.73 E-value=0.61 Score=40.96 Aligned_cols=109 Identities=13% Similarity=0.097 Sum_probs=88.4
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
....+.. +.+++++++|+..|.+-++.. +-|.+-|..--.+|++.|.++.|.+=.+.-+.. .|.-
T Consensus 84 LK~eGN~------------~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~y 148 (304)
T KOG0553|consen 84 LKNEGNK------------LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHY 148 (304)
T ss_pred HHHHHHH------------HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHH
Confidence 4567777 999999999999999988752 337899999999999999999998877766653 4545
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
..+|..|=.+|...|++++|++.|++- ..+.|+-.+|..=|+.-
T Consensus 149 skay~RLG~A~~~~gk~~~A~~aykKa--LeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 149 SKAYGRLGLAYLALGKYEEAIEAYKKA--LELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHhh--hccCCCcHHHHHHHHHH
Confidence 678999999999999999999998874 45688887887666543
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.68 E-value=3.5 Score=34.13 Aligned_cols=140 Identities=8% Similarity=-0.074 Sum_probs=104.1
Q ss_pred HHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 116 TAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 116 ~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
++....|++..--.+-.++...|+..||...|++-...-+.-|....-.+-++.-..+++..|...++.+.+..-.-.+.
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 45566788888888889999999999999999998876677788888888888888999999999999998765221111
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+--.+-..|...|..++|..-|+...+.--.|....|-+. -+.+.|+.+++..-+..+.
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e--~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAE--MLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHH--HHHHhcchhHHHHHHHHHH
Confidence 22345667889999999999999998776555555544333 3456676666655444433
No 170
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.68 E-value=1.4 Score=38.83 Aligned_cols=83 Identities=18% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 110 GALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 110 ~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
+.+..|+..+ ..| |.+-|..=-.+|.+.|+.+.|++=.+.-+.- .|. ..+|..|=.+|...|++++|.+.|..-+
T Consensus 99 eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 99 EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 4455565543 333 4555555566788888888887755544432 333 3578888888888888888888877766
Q ss_pred HcCCCCCCHH
Q 023326 187 HTQTRSISKR 196 (284)
Q Consensus 187 ~~~~~~~~~~ 196 (284)
+ +.|.+..
T Consensus 177 e--ldP~Ne~ 184 (304)
T KOG0553|consen 177 E--LDPDNES 184 (304)
T ss_pred c--cCCCcHH
Confidence 5 3554443
No 171
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=4.5 Score=34.99 Aligned_cols=134 Identities=10% Similarity=0.116 Sum_probs=103.0
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 120 TEFPLIA-AAKALRILRKRGQWLRVIQVAKWMLSKGQGATM---GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 120 ~~p~~~~-y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+++..+ |..++=+....|+.+.|..+++.+..+- |+. .-+-.++ +-..|..++|.++++.+++.+ |.|.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd--pt~~ 120 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD--PTDT 120 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC--cchh
Confidence 4555544 3345555667789999999999988763 443 2222222 344689999999999999886 6788
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
++|--=|...-..|+--+|++-+.+-.+. +.-|...|.-+-.-|...|++++|.-.+++|.-..
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 88987777777788888999888876654 66799999999999999999999999999987543
No 172
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.53 E-value=0.62 Score=43.46 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK---RLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+...++.+-.+|.+.|++++|...|++-++. .|.+. .+|..+-.+|.+.|++++|++.+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35789999999999999999999999998875 35444 46999999999999999999999998876
No 173
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.49 E-value=2.5 Score=36.71 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC-CCCCCH-HHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKIIEVFADMEEL-GVRPDE-DTVRRIA 237 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~-g~~Pd~-~ty~~ll 237 (284)
-|+.-++.+ ++|++..|..-|...++.|-.. .....+=-|-..+...|++++|-.+|..+... +-.|-. ..+--|-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 588888766 6678999999999999886431 11222444778888999999999999988654 333433 4666677
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
....+.|+.|+|..+|++..++|.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 778899999999999999998875
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.42 E-value=0.71 Score=35.21 Aligned_cols=88 Identities=18% Similarity=0.165 Sum_probs=65.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HH-HHHHHHHHHH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---ED-TVRRIASAFQ 241 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~~-ty~~ll~a~~ 241 (284)
.++-..|+.++|..+|++-...|...++ ...+-.+-+.|-..|++++|+.+|++....- |+ .. ....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 3456789999999999999998876422 3456667788999999999999999877652 44 22 1222334778
Q ss_pred HcCCHHHHHHHHHHh
Q 023326 242 RVGQDDKQKLVLKKY 256 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m 256 (284)
..|+.++|...+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 999999998877543
No 175
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.18 E-value=2.4 Score=37.60 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=86.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CCH----
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS------------ISK---- 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~------------~~~---- 195 (284)
...+.|+.++|++-|+.-.+- |+.|- ..||.-+.-| +.|+.+.|.++..++++.|++. +|+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvg 230 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVG 230 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhccc
Confidence 367889999999999886654 66664 5688777665 5578889999999998888761 122
Q ss_pred -----------HHHHHHHHHHHhCCChhHHHHHHHHHHH---------------------------------CCCCC-CH
Q 023326 196 -----------RLFSRMISLYDHHDMPNKIIEVFADMEE---------------------------------LGVRP-DE 230 (284)
Q Consensus 196 -----------~tyn~lI~~~~~~G~~~~A~~l~~~M~~---------------------------------~g~~P-d~ 230 (284)
..||.=...+-+.|+++-|.+.+.+|-- .|+.| -.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCCh
Confidence 1244445556677888888887776611 13344 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 231 DTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 231 ~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
.||..++--||+..-++-|-.++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 5899999999999999988887765
No 176
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.12 E-value=2 Score=40.14 Aligned_cols=150 Identities=9% Similarity=0.036 Sum_probs=101.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
..|....+..-++.|..+|-+..+.| +.++++.|++.|.-++. |+...|..+|+.=... .|++..--+-.+.-+.+
T Consensus 402 ~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 402 VHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHH
Confidence 34555555666888999999999888 77889999999987765 6777788888754433 23232223566667778
Q ss_pred CCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCC---ccccceeeeecccccccCC
Q 023326 208 HDMPNKIIEVFADMEELGVRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYI---HFKGERVRVRRDAWYESGS 282 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~---~~~g~~~~~~~~~~~~~~~ 282 (284)
.|+-+.|..+|+.-.+. ++-+ ...|..+|+-=...|++..+..+=++|.+.+.-. .+..-|-.+++++--|+-+
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~da~~~~le 557 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKADAILPPLE 557 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhccccCCCCC
Confidence 88888999998854322 2222 4578888888888999888887777777665533 2333344466666555443
No 177
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.05 E-value=3.4 Score=42.40 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH------------
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLW------------ 182 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~------------ 182 (284)
..+.+..-|...|.-+|....+.|.|++-.+.+..-++..-.|.+. +.||-+|++.+++.+.+++.
T Consensus 1124 ieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vG 1201 (1666)
T KOG0985|consen 1124 IESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVG 1201 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHh
Confidence 3445666788899999999999999999999998888887778776 47999999999998877762
Q ss_pred HHHHHcCCCC------CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 183 NMILHTQTRS------ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 183 ~~m~~~~~~~------~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
++..+.+.-. .++.-|.-|-.-+.+.|+++.|.+.-++- -++.||.-+-.||...+.+
T Consensus 1202 drcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1202 DRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 2222222210 14555778888888889998888765542 1444555555555544443
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.89 E-value=3.6 Score=32.33 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
..-|+.... ..+.|++++|.+.|+.+...= ..| ....---|+.+|-+.+++++|...++..++.+-..+++- |-..
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y 88 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYY 88 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHH
Confidence 334444444 345677888888888887651 111 235566778888888888888888888887765433433 7777
Q ss_pred HHHHHhCCChh
Q 023326 202 ISLYDHHDMPN 212 (284)
Q Consensus 202 I~~~~~~G~~~ 212 (284)
+.|++.....+
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77776655544
No 179
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.76 E-value=5.5 Score=38.75 Aligned_cols=131 Identities=12% Similarity=0.074 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.++-.+...|-+.|+++.|....+.-... .|+.+ -|.+=-..+..+|++++|..++++-.+.+.. |+..=.--..
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a--DR~INsKcAK 447 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA--DRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch--hHHHHHHHHH
Confidence 34447778899999999999999987744 66653 4544457788999999999999999887543 6553225556
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH--------HH--HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRR--------IA--SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~--------ll--~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-..++.++++|.++....-..|. +...+-. += .+|.+.|.+-.|.+=|..+.+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~ 513 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYK 513 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 67789999999999988877775 3332221 11 367788888888877777665543
No 180
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.66 E-value=11 Score=38.66 Aligned_cols=160 Identities=10% Similarity=-0.023 Sum_probs=83.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETE---F-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGAT--MGTYDTLLLAFD 170 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~---p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~--~~ty~~Ll~~~~ 170 (284)
.|..++|+..++..-....-... + ....+..+-..+...|++++|...+++.... ...+. ...+..+-..+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 46666666555443332211111 1 1223333444566679999999998886543 11122 334444555677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHH-----HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTRSISKRLF-----SRMISLYDHHDMPNKIIEVFADMEELGVRPDE---DTVRRIASAFQR 242 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~~~ty-----n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~---~ty~~ll~a~~~ 242 (284)
..|+.++|.+.+.+.............+ ...+..+...|+.+.|.+++.+.......... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999988887775432111010101 11224445567777777776654332111111 113344556667
Q ss_pred cCCHHHHHHHHHHhHH
Q 023326 243 VGQDDKQKLVLKKYLS 258 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~ 258 (284)
.|+.++|..++++...
T Consensus 704 ~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 704 LGQFDEAEIILEELNE 719 (903)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 7777777777766653
No 181
>PLN02789 farnesyltranstransferase
Probab=92.47 E-value=7.8 Score=34.83 Aligned_cols=104 Identities=9% Similarity=0.093 Sum_probs=69.3
Q ss_pred HHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC---C
Q 023326 135 RKRGQ--WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH---D 209 (284)
Q Consensus 135 ~~~g~--~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~---G 209 (284)
.+.|. .++++.+++.|.+.. .-|...|+-.--.+.+.|+++++.+.++++++.+.. |...|+..--.+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHHHHHHhccccc
Confidence 34454 367888998888664 237889998888899999999999999999987654 777788776666555 2
Q ss_pred Chh----HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 210 MPN----KIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 210 ~~~----~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
..+ ++++...++ -...|+-.+--.-+.+....
T Consensus 194 ~~~~~~e~el~y~~~a--I~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 194 GLEAMRDSELKYTIDA--ILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred cccccHHHHHHHHHHH--HHhCCCCcCHHHHHHHHHhc
Confidence 222 333333222 22456655555555555544
No 182
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.41 E-value=4.7 Score=41.22 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
.+-.+-.+|-+.|+.++|.++++++++.. .-|....|.+-..|+.. ++++|.+++..-+...
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 44456666777899999999999999876 44778888888888888 8888888866555443
No 183
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.39 E-value=2 Score=33.15 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=58.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
...+|..+.+.+.......+++.++..+. .+...+|.+|..|++.+ .++.++.++. ..+.+....+++.|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence 35678888888899999999999998874 37778999999999874 4455555552 123334444555555
Q ss_pred HcCCHHHHHHHHHHh
Q 023326 242 RVGQDDKQKLVLKKY 256 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m 256 (284)
+.+.++++..++.++
T Consensus 81 ~~~l~~~~~~l~~k~ 95 (140)
T smart00299 81 KAKLYEEAVELYKKD 95 (140)
T ss_pred HcCcHHHHHHHHHhh
Confidence 555555555555444
No 184
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.30 E-value=3.2 Score=39.93 Aligned_cols=129 Identities=11% Similarity=0.129 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAK--------WMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----- 191 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~--------~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----- 191 (284)
+..-..+......|+++.|++++. ...+.+..|-++. +++..+.+.++-+.|-.++++-+.-...
T Consensus 377 ~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 377 VVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 344466777888999999999999 6777777776654 5666677877777788887776543322
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.-..+|--+...--++|+.++|..+++++... ..+|+.+...++.+|++. +.++|..+-..+.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 112234555666667889999999999999875 357999999999999988 5677877765554
No 185
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.11 E-value=7.6 Score=33.92 Aligned_cols=117 Identities=11% Similarity=-0.037 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-----FDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-----~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
+-+..-...+...-.+.|+.+.|...|++..+..-+.|..+++.++.- |.-++++..|...+++....+-. |.
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~--~~ 286 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR--NA 286 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC--ch
Confidence 345556667777788899999999999988877666676676666532 44467888888889888876533 44
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
..-|.=--.....|+..+|++.++.|.+. .|...+-++++.-++
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~ 330 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLT 330 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHH
Confidence 43333222333458999999999999876 566666665554433
No 186
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.08 E-value=2 Score=40.18 Aligned_cols=94 Identities=10% Similarity=0.138 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCCHHHH-HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD-MEELGVRPDEDTV-RRI 236 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~-M~~~g~~Pd~~ty-~~l 236 (284)
...|+.+|+..-+..-++.|+.+|-++.+.+....++.+|+++|.-||. |+..-|..+|+- |+. -||.-.| +-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 5788999999999999999999999999999776699999999999987 888889998874 332 2444433 445
Q ss_pred HHHHHHcCCHHHHHHHHHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m 256 (284)
+.-+...++-+.|..+|+.-
T Consensus 473 l~fLi~inde~naraLFets 492 (660)
T COG5107 473 LLFLIRINDEENARALFETS 492 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHh
Confidence 55666777777788888733
No 187
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.98 E-value=0.52 Score=41.28 Aligned_cols=69 Identities=23% Similarity=0.137 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHc----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPLIAAAKALRILRKR----------------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD 170 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~----------------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~ 170 (284)
-+|.++..|...+.+-|+.+|+.+|..+=+- .+-+=++.++++|...|+.||..+--.||++|+
T Consensus 90 FIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FG 169 (406)
T KOG3941|consen 90 FIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFG 169 (406)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhc
Confidence 3456666666677777777777766665442 223458899999999999999999999999999
Q ss_pred hcCCH
Q 023326 171 KDHRA 175 (284)
Q Consensus 171 ~~g~~ 175 (284)
+.+-.
T Consensus 170 r~~~p 174 (406)
T KOG3941|consen 170 RWNFP 174 (406)
T ss_pred ccccc
Confidence 87753
No 188
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.90 E-value=1.6 Score=44.64 Aligned_cols=62 Identities=6% Similarity=0.072 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
+++.+|...|.-+|....+.|.+|+-+..+.--+...-.|...| .||.||++.+++.+.+++
T Consensus 1127 yikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1127 YIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred HHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHH
Confidence 33444556666666666666666666665554444445555443 556666666666555444
No 189
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=91.82 E-value=3.8 Score=36.85 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
-+.+.-|.-|...|+...|.++..+. -.| +...|-..|.+|+..|++++-.+.... +-..+-|..++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~-dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVP-DKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCc-HHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 35556677777889988888876654 244 999999999999999999988875432 2234889999999
Q ss_pred HHHcCCHHHHHHHHHHhH
Q 023326 240 FQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~ 257 (284)
|.+.|+.++|..+...+.
T Consensus 247 ~~~~~~~~eA~~yI~k~~ 264 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP 264 (319)
T ss_pred HHHCCCHHHHHHHHHhCC
Confidence 999999999999887754
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=91.56 E-value=2.1 Score=34.42 Aligned_cols=87 Identities=9% Similarity=-0.045 Sum_probs=63.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+-+.|++++|..+|.-+.-.+.- |..-+..|-..|-..+.+++|..+|......... |...+=.+-..|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCccchHHHHHHHhCCHHH
Confidence 77899999999999988775421 3444555555556678999999998877665543 44445556678888999999
Q ss_pred HHHHHHHHHH
Q 023326 214 IIEVFADMEE 223 (284)
Q Consensus 214 A~~l~~~M~~ 223 (284)
|.+.|..-.+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9998887665
No 191
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.37 E-value=0.072 Score=41.55 Aligned_cols=87 Identities=13% Similarity=0.244 Sum_probs=52.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
+|..+-+.+..+....+++.++..+.. .+....|.++..|++.++.++.++.++. .+.+-...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 445555566666666667777655543 2566677777777777776777766662 12244456666677777
Q ss_pred CHHHHHHHHHHhHHh
Q 023326 245 QDDKQKLVLKKYLSK 259 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~ 259 (284)
.++++..++.++...
T Consensus 85 l~~~a~~Ly~~~~~~ 99 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNH 99 (143)
T ss_dssp SHHHHHHHHHCCTTH
T ss_pred hHHHHHHHHHHcccH
Confidence 777777776665543
No 192
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.86 E-value=4.6 Score=39.37 Aligned_cols=114 Identities=11% Similarity=0.084 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG------QGATMGTYDTLLLAFDKDHRADE---AESLWNMILHTQTRSISKRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g------~~p~~~ty~~Ll~~~~~~g~~~~---A~~l~~~m~~~~~~~~~~~t 197 (284)
-+-.|+.+++.+++++|-+.+...+... -+-|...|+-+-+..++.-+.-. ...++..++..+-.. --..
T Consensus 172 ~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq-~g~L 250 (835)
T KOG2047|consen 172 REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ-LGFL 250 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH-HHHH
Confidence 4456777788888888888887776431 23455666666666665443322 223344433332111 2356
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
|++|-.-|.+.|++|+|-++|++-... ...+.-|+.+.++|+..
T Consensus 251 w~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 251 WCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 999999999999999999999985443 33556677777777654
No 193
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.54 E-value=5.9 Score=34.42 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG----QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~ 200 (284)
.|+..+.. .+.|++.+|.+.|..-++.. +.||..-| |-..+...|++++|..+|..+.+.+-..+ .....--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 68888875 46777999999999998752 56777666 67889999999999999999998765522 2344555
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC
Q 023326 201 MISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
|-....+.|+.|+|..+|++..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667778899999999999998765
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.48 E-value=7 Score=30.70 Aligned_cols=101 Identities=9% Similarity=0.056 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDEDTVRRI 236 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~~ty~~l 236 (284)
...|..-..++ +.|++++|.+.|+.+...+-. +.....---|+.+|-+.|++++|+..+++..+..- .|+ +-|...
T Consensus 11 ~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34455555444 567888888888888766533 23445567778888888888888888887766653 233 445555
Q ss_pred HHHHHHcCC-----------------HHHHHHHHHHhHHhcC
Q 023326 237 ASAFQRVGQ-----------------DDKQKLVLKKYLSKWK 261 (284)
Q Consensus 237 l~a~~~~G~-----------------~d~a~~l~~~m~~~~~ 261 (284)
+.|++.... ...|..-|++++++|.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP 130 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP 130 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence 555443332 4567777777776654
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=90.31 E-value=9 Score=31.76 Aligned_cols=127 Identities=12% Similarity=0.131 Sum_probs=75.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG-QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH---- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g-~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~---- 207 (284)
+.+.|++++|...|+.+...- ..| -....-.+..++-+.|+++.|...++.+++.+-..+.. -+-..+.|.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhC
Confidence 678899999999999998752 111 12445567788889999999999999998876553222 24333333332
Q ss_pred ---------CCChhHHHHHHHHHHHCC----CCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 208 ---------HDMPNKIIEVFADMEELG----VRPDEDTVR------------RIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 208 ---------~G~~~~A~~l~~~M~~~g----~~Pd~~ty~------------~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+...+|+..|+++...- ..++..... .+..-|.+.|...-|..-++.+.++|.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 223346666676665431 122222221 123356677888888888888887765
No 196
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.29 E-value=1.9 Score=42.63 Aligned_cols=80 Identities=25% Similarity=0.437 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
..|..|.++|+|++|.++-.+-. |-......|-+--.-+-+.|++.+|++++-..- .| .-.|..|-++
T Consensus 796 dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p------~~aiqmydk~ 863 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP------DKAIQMYDKH 863 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc------hHHHHHHHhh
Confidence 44444555555555555443321 222233344433334444455555554442211 12 3346777777
Q ss_pred CChhHHHHHHHH
Q 023326 209 DMPNKIIEVFAD 220 (284)
Q Consensus 209 G~~~~A~~l~~~ 220 (284)
|..|+++.+..+
T Consensus 864 ~~~ddmirlv~k 875 (1636)
T KOG3616|consen 864 GLDDDMIRLVEK 875 (1636)
T ss_pred CcchHHHHHHHH
Confidence 777777777664
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=90.10 E-value=4.5 Score=32.56 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=43.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
..|++++|+.+|.-+.-.+. .+..-|..|-..|-..+++++|++.|...-..+. =|...+--.-..|...|+.+.|+
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHH
Confidence 45666666666665554332 2444455555555555666666666655433332 12222333334455556666666
Q ss_pred HHHHHhHHh
Q 023326 251 LVLKKYLSK 259 (284)
Q Consensus 251 ~l~~~m~~~ 259 (284)
..|+...++
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 666555443
No 198
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.03 E-value=3.8 Score=36.05 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=60.3
Q ss_pred HHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAF---DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~---~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
|.+.|+.+.|..-|..-.+. |-.|+ .+..+-.++ +...+-.++..+|++++.. .|.|+.+-..|-.++...|
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~g~n~~--~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~afe~g 241 (287)
T COG4235 166 YMALGRASDALLAYRNALRLAGDNPE--ILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFAAFEQG 241 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHcc
Confidence 88888888888888876543 43333 333333332 2233456688888888875 3557777777778888888
Q ss_pred ChhHHHHHHHHHHHC
Q 023326 210 MPNKIIEVFADMEEL 224 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~ 224 (284)
++.+|...|+.|.+.
T Consensus 242 ~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 242 DYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHhc
Confidence 888888888888766
No 199
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.99 E-value=4.4 Score=38.72 Aligned_cols=115 Identities=10% Similarity=0.194 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 141 LRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 141 ~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
+.....+++++.. ...|+ .+|..+|+.--+..-++.|+.+|.+..+.+..+-.+.+++++|.-||. +|.+-|..+|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3344444444433 23333 467777777778888888888888888887776678888888888886 78888888887
Q ss_pred H-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 220 D-MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 220 ~-M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
- |+..|-.| .--...++-+.+.++-..+..+|++....
T Consensus 426 LGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 426 LGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4 44444333 23345667777888888888888888776
No 200
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.89 E-value=0.63 Score=27.04 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHH
Q 023326 198 FSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
|+.|-..|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55666666777777777776666
No 201
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=89.46 E-value=6.9 Score=39.44 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
-+|+...|-.|+.++|-.+-++- -|....-.|-+.|-..|++.+|..+|-+.+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34444445555555555555442 255666677788888888888888876654
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=15 Score=33.86 Aligned_cols=124 Identities=15% Similarity=0.086 Sum_probs=90.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-----GQGA---------TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-----g~~p---------~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
|.+.|++..|...|++-... +..+ -..+++.|...|.|.+++..|.+..+..+..+ |.|+-..=
T Consensus 218 ~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALy 295 (397)
T KOG0543|consen 218 LFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALY 295 (397)
T ss_pred HHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHH
Confidence 89999999999998874431 1221 24678888889999999999999999888764 44665444
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHhHHhcC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV--GQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~--G~~d~a~~l~~~m~~~~~ 261 (284)
-==.+|...|+++.|...|+++.+. .|+-..-..=|..|.+. ...++..++|..|..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4456788889999999999998765 77666665555555432 234456788888876644
No 203
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=13 Score=34.53 Aligned_cols=120 Identities=14% Similarity=0.137 Sum_probs=78.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------------
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMIL-------------------------- 186 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~-------------------------- 186 (284)
+.+.|+.++|.--|+.-... .| +...|--|+..|...|++.+|.-.-+.-.
T Consensus 344 L~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 344 LIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHH
Confidence 55566666666666654432 22 45566666666666666666554422111
Q ss_pred ------HcCC--CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 187 ------HTQT--RSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 187 ------~~~~--~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.+. .|.=.-.-+.+-..+...|..++++.+++.-. -..||..-.+.|-..+.....+++++..|....
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L--~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL--IIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH--hhccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 1111 12112224677778888899999999998754 358999999999999999999999888876554
No 204
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.58 E-value=1.5 Score=38.99 Aligned_cols=57 Identities=14% Similarity=0.007 Sum_probs=49.8
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
+-.=+.++++.++..=++-|+-||.+|++.||+.+.+.+.+.+|.++...|+.....
T Consensus 111 llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~~ 167 (418)
T KOG4570|consen 111 LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEAF 167 (418)
T ss_pred HHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 334467799999999899999999999999999999999999999999888876544
No 205
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=88.39 E-value=15 Score=31.49 Aligned_cols=154 Identities=10% Similarity=0.041 Sum_probs=98.1
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh--
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPL-IA---AAKALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDK-- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~-~~---y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~-- 171 (284)
.|..++|...|+.+.. ..|+. .. .-.+..+|.+.+++++|...|++..+.- -.|++ -|.-.+.|.+.
T Consensus 45 ~g~y~~Ai~~f~~l~~-----~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 45 DGNWKQAITQLEALDN-----RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred CCCHHHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 4555666666666543 11211 11 1234566889999999999999988762 33433 34444444431
Q ss_pred ---------------cCC---HHHHHHHHHHHHHcCCCCC---CHHH------------HHHHHHHHHhCCChhHHHHHH
Q 023326 172 ---------------DHR---ADEAESLWNMILHTQTRSI---SKRL------------FSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 172 ---------------~g~---~~~A~~l~~~m~~~~~~~~---~~~t------------yn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+ ..+|..-|+.+++.+-... +... --.+..-|-+.|.+.-|+.=|
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 012 3456678888888753310 1100 123445588999999999999
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 219 ADMEELG--VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 219 ~~M~~~g--~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
+.+.+.= -.........++.+|...|..++|..+...+..
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 9998752 334555777888999999999999998876654
No 206
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.19 E-value=4.6 Score=32.94 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC---CCHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS--KRLFSRMISLYDHHDMPNKIIEVFADMEELGVR---PDEDTVR 234 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~--~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~---Pd~~ty~ 234 (284)
..+..+-.-|++.|+++.|.+.+.++.+....+ . ...+-.+|....-.|++..+...+.+.+..--. ++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~-~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSP-GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 578888899999999999999999987754332 2 234678888888899999999988876654433 3333333
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHhHHhc
Q 023326 235 RIASAF--QRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 235 ~ll~a~--~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+..|+ ...|++..|-++|-+....+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 344443 46678888888886665444
No 207
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=88.12 E-value=17 Score=34.49 Aligned_cols=131 Identities=15% Similarity=0.054 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSK-GQGAT-----MGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~-----~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+..+++..+=.|+=+.+++++.+-.+. |+.-. .-+|+.++..++. ...++.|.++++.+.+.+ | +-
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P-~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--P-NS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--C-Cc
Confidence 4457777888889999999999875543 23321 3566777766654 457889999999999875 4 54
Q ss_pred HHHHHHH-HHHHhCCChhHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMI-SLYDHHDMPNKIIEVFADMEELG---VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI-~~~~~~G~~~~A~~l~~~M~~~g---~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...- ..+...|++++|++.|++..... -+.....|--+.-.+.-.+++++|.+.|.++.+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 4454444 45566799999999999754321 1234455666666788899999999999999854
No 208
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.11 E-value=8.7 Score=34.99 Aligned_cols=115 Identities=8% Similarity=-0.040 Sum_probs=77.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGT-YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEV 217 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l 217 (284)
.+.-|.+.|+..-+.+..-|.+. --++-+.+--..++++....++....- ...+|..-|| +-.+++..|.+.+|+++
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N-~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLN-LAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhH-HHHHHHHhcChHHHHHH
Confidence 45667777776666654433321 112223333445788888888876654 4444666666 56899999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHh
Q 023326 218 FADMEELGVRPDEDTVRRIA-SAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 218 ~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d~a~~l~~~m 256 (284)
|-......++ |.++|-.++ +.|.+.+..+.|..++-.+
T Consensus 416 f~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 416 FIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 9876544444 777887776 6778999999998887554
No 209
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.09 E-value=5.2 Score=35.74 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+.++++.++..=..-|+-||.+|+..||+.+.+.|+..+|..+.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 44455555554445555555555555555555555555544444333
No 210
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=2.6 Score=39.88 Aligned_cols=103 Identities=12% Similarity=0.007 Sum_probs=80.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+.+..|+++.|+.+|.+-+... ++|++-|..-..+|++.|++++|.+=-.+-++. .|.=.--|+-.=.++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 3567899999999999877554 349999999999999999999988776666553 4522345888888999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAF 240 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~ 240 (284)
+|+.-|.+=.+. .| |..-++.+..++
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 999999874443 33 566777777776
No 211
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=88.00 E-value=7.9 Score=28.82 Aligned_cols=48 Identities=17% Similarity=0.419 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC--C--CCCC-HHHHHHHHHHHHHcCC
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL--G--VRPD-EDTVRRIASAFQRVGQ 245 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~--g--~~Pd-~~ty~~ll~a~~~~G~ 245 (284)
|..|+.-|-..|+.++|++++.+..+. + ..|. .....++|..+.+.|.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~ 94 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGN 94 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCCh
Confidence 899999999999999999999998772 1 1111 1123345777777765
No 212
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=87.43 E-value=21 Score=35.12 Aligned_cols=126 Identities=17% Similarity=0.188 Sum_probs=89.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT------QTRSISKRLFSRM 201 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~l 201 (284)
...|......|..+-++.++++-++. .|. .-+--|.-+++.+++++|.+.+...+.. ..+ .+...|+-+
T Consensus 142 ~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gk-Sn~qlw~el 216 (835)
T KOG2047|consen 142 DLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGK-SNHQLWLEL 216 (835)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhccc-chhhHHHHH
Confidence 35556666778888888888887764 333 3566778889999999999888776533 233 377778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCC--CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELG--VRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g--~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-...+++-+.-.-+.+ ++....| .-+|.. -|.+|.+.|.+.|.+|+|..++++-...
T Consensus 217 cdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred HHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 8887777554433332 2233334 346765 7899999999999999999999876543
No 213
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.30 E-value=14 Score=29.86 Aligned_cols=135 Identities=11% Similarity=0.074 Sum_probs=93.1
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 109 YGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 109 f~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
.+-+..++.....|+...|..+|..+.+.|++.. +..+.+.++-+|.......+-.+.. ....+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 3445557778888999999999999999998554 4667778887877666655543333 344556665555433
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
=.. .+..++..+-..|++-+|+.+.+..... |.....-++.|-...++...-..++.-..+
T Consensus 88 L~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 LGT-----AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hhh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 2788889999999999999998875322 233346678888888877766666665554
No 214
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.17 E-value=13 Score=30.35 Aligned_cols=89 Identities=7% Similarity=-0.119 Sum_probs=63.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH------HHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL------FSRMIS 203 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t------yn~lI~ 203 (284)
..|++.|+.++|++.|.++.+....+.. ..+-.+|....-.+++..+....++....--...|... |..|.
T Consensus 44 ~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~- 122 (177)
T PF10602_consen 44 DHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLA- 122 (177)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH-
Confidence 3399999999999999999987655543 56778888888899999998887666543333223322 23222
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~ 222 (284)
+...|++.+|-++|-+..
T Consensus 123 -~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 123 -NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred -HHHhchHHHHHHHHHccC
Confidence 233589999999888764
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=86.91 E-value=27 Score=32.89 Aligned_cols=42 Identities=7% Similarity=-0.126 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELG----VRPDEDTVRRIASAF 240 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g----~~Pd~~ty~~ll~a~ 240 (284)
+..+..+...|++.++..++++|...= ..-|..+|+.++-.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml 177 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML 177 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence 455555555666666666655554332 224555555533333
No 216
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=86.87 E-value=38 Score=34.42 Aligned_cols=106 Identities=12% Similarity=0.041 Sum_probs=72.0
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 023326 94 LVRIVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH 173 (284)
Q Consensus 94 l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g 173 (284)
+.-...|..++|....+.+.. ... -|..|...+-..|...|+.++|..+|++..+. -|+..-...+..+|.+.+
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~---~~~-~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~ 124 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYG---LKG-TDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREK 124 (932)
T ss_pred HHHHHhcCchhHHHHHhhhcc---CCC-CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH
Confidence 333346777777766665542 222 27888889999999999999999999998755 678888888999999998
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
++.+-.+.--+|-+. .|.+...|-++|+.+.+
T Consensus 125 ~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 125 SYKKQQKAALQLYKN--FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHHHHHHh--CCcccchHHHHHHHHHH
Confidence 887755554444332 23344444444444444
No 217
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=86.62 E-value=8.4 Score=31.94 Aligned_cols=92 Identities=9% Similarity=0.075 Sum_probs=59.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH----
Q 023326 169 FDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRPDEDTVRRIASAFQR---- 242 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~---- 242 (284)
+...|++++|...|+.+...+-. +......-.++.+|-+.|++++|...|++....- -.|.. -+...+.|.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHhC
Confidence 45779999999999999987543 2234556678899999999999999999976542 23332 23333333322
Q ss_pred ---------cCCHHHHHHHHHHhHHhcC
Q 023326 243 ---------VGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 243 ---------~G~~d~a~~l~~~m~~~~~ 261 (284)
.+...+|...|+.+.++|.
T Consensus 94 ~~~~~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 94 PGILRSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHH-TT---HHHHHHHHHHHHHHHH-T
T ss_pred ccchhcccChHHHHHHHHHHHHHHHHCc
Confidence 2334577888888888765
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=22 Score=31.37 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=79.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHCCCCC-CHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD---MPNKIIEVFADMEELGVRP-DEDT 232 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G---~~~~A~~l~~~M~~~g~~P-d~~t 232 (284)
-|...|--|=..|-..|+++.|..-|..-.+. .|++...+..+-.++.... +-.++..+|+++... .| |...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHH
Confidence 36789999999999999999999999988875 4557777777766665543 456899999998765 44 5556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|-.++...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666778899999999999999999865
No 219
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.51 E-value=21 Score=30.94 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=108.7
Q ss_pred HHhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhc-
Q 023326 97 IVSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGATM--GTYDTLLLAFDKD- 172 (284)
Q Consensus 97 ~~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~--~ty~~Ll~~~~~~- 172 (284)
...|...+|..-|+.++. ..........+--.++-++-+.++.++|+..+++.... +-.||+ +.|-..+..+-..
T Consensus 45 L~~gn~~~A~~~fe~l~~-~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDS-RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHH-cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 347888889999998873 22233334455567778888999999999999986654 566765 4454444433222
Q ss_pred ---CC---HHHHHHHHHHHHHcCCCC---CCHHH-----------H-HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 023326 173 ---HR---ADEAESLWNMILHTQTRS---ISKRL-----------F-SRMISLYDHHDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 173 ---g~---~~~A~~l~~~m~~~~~~~---~~~~t-----------y-n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
.+ ..+|..=|.++++.+-.. +|+.. + -.+-.-|.+.|.+.-|..=+++|.+. ..=...
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 22 233444566666654220 12211 2 34447789999999999999999987 222222
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 232 ---TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 232 ---ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+-.|..+|-+.|..++|.+.-.-+...+.
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 466677899999999999999888876655
No 220
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.51 E-value=12 Score=32.89 Aligned_cols=79 Identities=15% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH-----TQTRSISKRLF 198 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~-----~~~~~~~~~ty 198 (284)
+.+++.+++.+...|+.+.+...++++.... .-|...|..||.+|.+.|+...|...|+.|.+ .|+.| ...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P-~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP-APELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc-cHHHH
Confidence 4467788999999999999999999998763 23788999999999999999999999888854 56666 66666
Q ss_pred HHHHHH
Q 023326 199 SRMISL 204 (284)
Q Consensus 199 n~lI~~ 204 (284)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
No 221
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.48 E-value=7.9 Score=37.12 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH-HH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL-FS 199 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t-yn 199 (284)
+|...+..|=-.|--.|++++|...|+..++. +| |...||-|=..++...+-++|..-|++-++. +|-=+++ ||
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyN 503 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYN 503 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehh
Confidence 34444444445566788999999999998865 66 5679999999999999999999999998874 4422333 55
Q ss_pred HHHHHHHhCCChhHHHHHHHH---HHHCC------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFAD---MEELG------VRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~---M~~~g------~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
.-| .|...|.+++|.+.|-+ |...+ ..++...|.+|=.++.-.++.|-+.+.
T Consensus 504 lgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 504 LGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 554 57888999999998775 44442 233455777777777777777755444
No 222
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=86.38 E-value=16 Score=35.20 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.+...|.++--.....|++++|...+++.++.. | +...|..+-..|...|+.++|.+.|++-....
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667766555556799999999999999864 5 78889999999999999999999998865543
No 223
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.30 E-value=22 Score=31.75 Aligned_cols=142 Identities=7% Similarity=-0.048 Sum_probs=90.8
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCC-------
Q 023326 120 TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTL-LLAFDKDHRADEAESLWNMILHTQT------- 190 (284)
Q Consensus 120 ~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~L-l~~~~~~g~~~~A~~l~~~m~~~~~------- 190 (284)
..| +....+.+=-.|-...++.+|-..++++... .|...-|--- -..+.+.+.+..|.++...|.+..-
T Consensus 39 r~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 39 RSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 345 6666777777788899999999999998764 3443333211 1234455666666666555533100
Q ss_pred --------C-------------C--CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCH
Q 023326 191 --------R-------------S--ISKRLFSRMISLYDHHDMPNKIIEVFADMEE-LGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 191 --------~-------------~--~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
. | .+..+-+-.-...-+.|+++.|++=|++-.+ .|.+| ...||.-+..| +.|+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy-~~~qy 194 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY-SSRQY 194 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-hhhhH
Confidence 0 0 0111222233344578999999999998665 45665 55788777766 56788
Q ss_pred HHHHHHHHHhHHhcCCCcc
Q 023326 247 DKQKLVLKKYLSKWKYIHF 265 (284)
Q Consensus 247 d~a~~l~~~m~~~~~~~~~ 265 (284)
+.|.++..++.++..-.|.
T Consensus 195 asALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHHHHHHHHHHHhhhhcCC
Confidence 9999999999988654443
No 224
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.78 E-value=24 Score=31.05 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLS--KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~--~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
..-|.+++.-++|.+++...-+--+ +.++|.+.-.++|+ |+|.+....+.++-..-.+..... +..-|.+++..|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILL--ysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELy 163 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILL--YSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELY 163 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHH
Confidence 3568889999999988775544333 35778887777777 899999999988887776654332 344488888777
Q ss_pred Hh-----CCChhHHHHHH
Q 023326 206 DH-----HDMPNKIIEVF 218 (284)
Q Consensus 206 ~~-----~G~~~~A~~l~ 218 (284)
.. .|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 76 49999999887
No 225
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=85.54 E-value=4.4 Score=24.46 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=8.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~ 187 (284)
-..|...|++++|.++++..++
T Consensus 8 a~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 8 ARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333444444444444444433
No 226
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.52 E-value=25 Score=31.03 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 155 QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 155 ~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
-.++..+-.++|..+++.+++..-.++|+.....-....|...|...|..-...||..-+.++.++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 445555555666666666666666666665554411112445566666666666666555555443
No 227
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=24 Score=30.61 Aligned_cols=145 Identities=14% Similarity=0.153 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLS--KGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTR--------- 191 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~--~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~--------- 191 (284)
.-|+.....|..+|..+-|-.-++.--+ .++.|+. ..|.--+..+-..++...|.+++...-...++
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 3466777777777777766555554322 2455652 34444444444444444444443322111111
Q ss_pred ---------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 192 ---------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--VRP-DEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 192 ---------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~P-d~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
+.--..|-+.|-.|....|+..|..++++--+-+ ..+ |..+...||.+| ..|+.|++.+++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 1111235566667777889999999999865554 233 667999999999 678888887765
Q ss_pred -----HHhHHhc-----CCCcccccee
Q 023326 254 -----KKYLSKW-----KYIHFKGERV 270 (284)
Q Consensus 254 -----~~m~~~~-----~~~~~~g~~~ 270 (284)
..|-..| .+...+|+++
T Consensus 251 ~sp~~r~MDneya~l~kdl~~P~gn~~ 277 (308)
T KOG1585|consen 251 SSPTVRNMDNEYAHLNKDLSNPNGNYV 277 (308)
T ss_pred cChHhhhhhHHHHHHhhccCCCCCCcc
Confidence 3343332 4566688888
No 228
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.11 E-value=23 Score=30.33 Aligned_cols=126 Identities=10% Similarity=0.062 Sum_probs=81.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATM-GTY---DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH-- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty---~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~-- 207 (284)
+.+.|++++|.+.|+.+...- |+. ..- --|..++-+.+++++|...+++.++.+-..+++ -|-..+.|.+.
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 567899999999999998753 332 222 345577789999999999999999887654333 36566666552
Q ss_pred C---------------CCh---hHHHHHHHHHHHC----CCCCCHHHHHHH------------HHHHHHcCCHHHHHHHH
Q 023326 208 H---------------DMP---NKIIEVFADMEEL----GVRPDEDTVRRI------------ASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 208 ~---------------G~~---~~A~~l~~~M~~~----g~~Pd~~ty~~l------------l~a~~~~G~~d~a~~l~ 253 (284)
. .|. .+|++.|++..+. ...|+....... ..-|-+.|...-|..=+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 1 122 3566666666543 122333332222 23466778887788888
Q ss_pred HHhHHhcCC
Q 023326 254 KKYLSKWKY 262 (284)
Q Consensus 254 ~~m~~~~~~ 262 (284)
+.+.++|..
T Consensus 199 ~~v~~~Yp~ 207 (243)
T PRK10866 199 EQMLRDYPD 207 (243)
T ss_pred HHHHHHCCC
Confidence 888777653
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.91 E-value=2 Score=24.80 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|..|-..|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57888899999999999999999843
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.87 E-value=20 Score=34.14 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=57.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
.+.+.|+.+||++.|++|.+.. ..-+....-.||.++...++..++..++.+--+..........|+..+--+-..|+
T Consensus 268 CarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 268 CARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 3457899999999999998753 22245577889999999999999999998864443333356778887755554444
No 231
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=84.14 E-value=46 Score=32.91 Aligned_cols=117 Identities=11% Similarity=0.133 Sum_probs=65.6
Q ss_pred HHHHHHcCCHHHHHHHHHH------HHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKW------MLSKGQGA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~------M~~~g~~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
-+.+...|+.++|..+.-+ +.+-+.+. +..+.-.+-.-+-+...+..|-++|..|-++ -++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksi 779 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSL 779 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHH
Confidence 3445556666666554321 12222222 2334444434444556677777777766432 345
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH-H----------HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDED-T----------VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-t----------y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..+...|++++|+.+-+..-+ +.||++ . |.--=.||-++|+..+|.++++++...
T Consensus 780 VqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 5666777888888877665322 244443 2 333345778888888888888777644
No 232
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.97 E-value=3.1 Score=24.24 Aligned_cols=26 Identities=19% Similarity=0.387 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+++.|-..|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444444444444444433
No 233
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.96 E-value=13 Score=33.66 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=60.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 113 DKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 113 ~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
.+....+.. |.++|.+++|+.+|..-.. +.| |.++|..--.+|.+...+..|+.=.+.-+..
T Consensus 98 SEiKE~GN~------------yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--- 160 (536)
T KOG4648|consen 98 SEIKERGNT------------YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--- 160 (536)
T ss_pred HHHHHhhhh------------hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---
Confidence 335667888 9999999999999986543 456 8999999999999999998777665554432
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
=...+.+|.|.|.-.+++....+
T Consensus 161 ------d~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 161 ------DKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhHHH
Confidence 13345666665554444444443
No 234
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=83.37 E-value=2.8 Score=25.38 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+|..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4677788888888888888888888765
No 235
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.82 E-value=3.4 Score=24.02 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
..+++.|-..|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3578999999999999999999999864
No 236
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.66 E-value=0.33 Score=37.71 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=44.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWN 183 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~ 183 (284)
+|..+.+.+..+.....++.+...+..-+....+.|+..|++.++.+...++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 566677888899999999999988766778999999999999988888777766
No 237
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.22 E-value=27 Score=30.64 Aligned_cols=128 Identities=8% Similarity=-0.013 Sum_probs=81.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH-----H
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI-----S 203 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI-----~ 203 (284)
.++..+.-.|.+.-.+.++++.++..-.-+..--..|.+.--+.||++.|...|+...+...+- +..+++.++ .
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhhhhh
Confidence 3444455567788888888888886555566666677777777899999999998665443332 333343333 3
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|.-..++.+|...|.+.....-+ |-.+.-.+|+- .-.|+..+|.++++.|++.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl--lYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL--LYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHH--HHHHHHHHHHHHHHHHhcc
Confidence 455566777888878776554322 22222223333 3467888899999998866
No 238
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=81.31 E-value=16 Score=37.02 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|+.|=..|-..|++++|+++-+.=..- ---.||......+-..|+.+.|.+.|++-
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 555555566666666666554431111 12234544455555556666677666653
No 239
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=81.14 E-value=18 Score=34.14 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK-----------------GQGATMGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----------------g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
....+.++.-+-+.|..+.|+++-.+-..+ .-..+...|..|-+...+.|+++-|++.|.+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 444566666677777777776664432211 111345566666666666666666666555421
Q ss_pred HcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 187 HTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 187 ~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
. |..|+=.|.-.|+.++..++.+.-...|- +|.-+.++--.|++++..+++.+
T Consensus 375 -----d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 375 -----D-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----C-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 55555566666666655555555554442 34444555555666666555543
No 240
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.93 E-value=40 Score=32.12 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHc
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV-RPDEDTVRRIASAFQRV 243 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd~~ty~~ll~a~~~~ 243 (284)
|-..+-+.|+.++|.+.+.+|.+..-.-.+..+.-.||.++...+.+.++..++.+-.+... +--...|+..|--+...
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 33344567999999999999986542212455678899999999999999999999643221 22345788777555444
Q ss_pred CC
Q 023326 244 GQ 245 (284)
Q Consensus 244 G~ 245 (284)
|+
T Consensus 345 ~d 346 (539)
T PF04184_consen 345 GD 346 (539)
T ss_pred cc
Confidence 43
No 241
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.91 E-value=25 Score=27.68 Aligned_cols=98 Identities=9% Similarity=0.038 Sum_probs=64.0
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHH
Q 023326 150 MLSKGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTR----SISKRLFSRMISLYDHHDM-PNKIIEVFADME 222 (284)
Q Consensus 150 M~~~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~~tyn~lI~~~~~~G~-~~~A~~l~~~M~ 222 (284)
|.+.+..++. ...|.+|.-...-+.+.-...+++.+.-.... -.+..+|++++.+..+..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444555543 45677777777777777777777666322111 1134457888888866655 445677888888
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
+.+.+++..-|..+|+++.+.-..|
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~~ 132 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFHD 132 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCCc
Confidence 8888888888888888886654333
No 242
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.86 E-value=16 Score=27.05 Aligned_cols=86 Identities=13% Similarity=0.102 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||--+-+++...|-. ...+--+-+..+-..|++++|..+.+.+ +.| |...|-+|-. .+.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~p-dlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYP-DLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCc-hHHHHHHHHH--HhhccHHHHHHHH
Confidence 367888888888877643 3333334445566789999999888766 454 8888887755 4778888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 023326 219 ADMEELGVRPDEDTV 233 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty 233 (284)
.+|...| .|-..+|
T Consensus 92 ~rla~sg-~p~lq~F 105 (115)
T TIGR02508 92 NRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHhCC-CHHHHHH
Confidence 8888776 3444444
No 243
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=80.44 E-value=19 Score=28.15 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
......-|+.+.+.|.-|+-.++++++...+ .+ +....--+-.+|.+.|+..++.+++.+--+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~-~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EI-NPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CC-CHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3456677788888888888888888887532 33 5565667778899999999998888888777764
No 244
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=80.10 E-value=66 Score=31.94 Aligned_cols=136 Identities=10% Similarity=-0.028 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM-GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
..|+...|..-+..-.-.+..++|++++++-++. -|+- -.|.-+=..+-+.++++.|.+-|..=... .|...-.|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLW 722 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLW 722 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHH
Confidence 4455555555555555555666666666554433 2332 23333444444555555555555432221 24455567
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-.|...-=+.|.+-+|..+|++-+-..- -|..-|-..|..=.+.|+.++|..++.+...++
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777778888888888877554422 277789999999999999999998887776653
No 245
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.34 E-value=32 Score=30.38 Aligned_cols=117 Identities=7% Similarity=0.095 Sum_probs=85.5
Q ss_pred cCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 137 RGQWLRVIQVAKWMLS-KGQGATMGTYDTLLLAFDK-DH-RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~-~g~~p~~~ty~~Ll~~~~~-~g-~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+..+.+|+.+|+..-- ..+--|..+-..|++.... .+ ....--++.+-+++.....++..+--.+|..++..+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4456788888874332 3455678888888888866 32 3333446666666653344477778999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 214 IIEVFADMEEL-GVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 214 A~~l~~~M~~~-g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
-++.++.-... +..-|..-|..+|+.-...|+..-+.++.
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 99998886555 56679999999999999999977555544
No 246
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=79.31 E-value=12 Score=35.53 Aligned_cols=99 Identities=11% Similarity=0.008 Sum_probs=73.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~ 177 (284)
.|..+.|...|..- -....+|-+-|+.=..+|.+.|++++|++=-.+- ..+.|+ .--|.-+=.++.-.|++++
T Consensus 15 ~~d~~~ai~~~t~a----i~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 15 SGDFETAIRLFTEA----IMLSPTNHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred cccHHHHHHHHHHH----HccCCCccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45666665555322 1356668999999999999999999998744333 345666 3568888888888899999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
|..-|.+=.+. .|.+...++-+..++
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhh
Confidence 99999887764 466888888888877
No 247
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.18 E-value=5.6 Score=27.85 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=31.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHHHhCCChhHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTRSIS-KRLFSRMISLYDHHDMPNKIIEV 217 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l 217 (284)
....-++|...|...++....+++ -.++..|+.+|+..|++.++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777766655444 24567777777777777777764
No 248
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.11 E-value=22 Score=26.09 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLS-KGQGATMGTYDTLLL 167 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~-~g~~p~~~ty~~Ll~ 167 (284)
.+-..|....++...|++....+.|++|.+.+++..|.++|+-.+. .|. +...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3444455455556667777777777777777777777777776663 232 3345555553
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=78.59 E-value=30 Score=27.09 Aligned_cols=93 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHHhCC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL---FSRMISLYDHHD 209 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t---yn~lI~~~~~~G 209 (284)
++...|++++|++.|.+-+.. .+-+.-.||.--.++--.|+.++|..=+++-++.-... +... |----..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456778888888888776643 22356678888888888888888887777776653322 3322 222223456667
Q ss_pred ChhHHHHHHHHHHHCCCC
Q 023326 210 MPNKIIEVFADMEELGVR 227 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~ 227 (284)
+-|.|..=|+.-.+.|-.
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 788888777777777743
No 250
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.45 E-value=11 Score=27.88 Aligned_cols=47 Identities=4% Similarity=0.059 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+..+-++.+......| +..+..+.+.+|-|.+++--|+.+|+-.+.+
T Consensus 28 e~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445566666666665 6666677777777777777777777666543
No 251
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=77.78 E-value=30 Score=35.81 Aligned_cols=124 Identities=12% Similarity=0.017 Sum_probs=71.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|-+.++..+|+.-|+.-.+-. +-|...|..|..+|...|++..|.++|+..... +|.+...-=-.-..-|.+|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 556666777776666555432 125677888888888888888888888776553 34332211111123466788888
Q ss_pred HHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 214 IIEVFADMEEL------GVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 214 A~~l~~~M~~~------g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|++.+...... |..--..++.-+...+.-.|-..++..+++.-.+.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 88877765321 222223355555555555565556666665555443
No 252
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.55 E-value=2.9 Score=23.94 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 191 RSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 191 ~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
.|.+...|+-|-..|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4667888888888888888888875
No 253
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.34 E-value=20 Score=30.53 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISL 204 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~ 204 (284)
|.+..|+.+.+.+.+.+|+.+.++-.+.. +-|..+-..|++.+|-.|++++|..-++-.-+..-. .+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45677889999999999999998766652 336778889999999999999998777766554221 1134567666654
No 254
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=77.30 E-value=8 Score=38.19 Aligned_cols=85 Identities=6% Similarity=0.028 Sum_probs=40.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
..+.++++.|.+-|..-... .|| ...||.|=.+|-+.++-.+|...+.+-.+.... +..+|--.+-...+.|.++
T Consensus 529 ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeeeechhhhhhhcccHH
Confidence 34444555555555444322 232 345555555555555555555555555444422 3333433333445555555
Q ss_pred HHHHHHHHHH
Q 023326 213 KIIEVFADME 222 (284)
Q Consensus 213 ~A~~l~~~M~ 222 (284)
+|++.+.+|.
T Consensus 605 da~~A~~rll 614 (777)
T KOG1128|consen 605 DAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 255
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.26 E-value=13 Score=27.19 Aligned_cols=63 Identities=5% Similarity=0.012 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
+.=+..+-++.+......| +..+-++.+.+|-|.+|+.-|+.+|+-.+.+. ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVP-EPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 3334555566777777765 66667777777777777777777777665331 113335555443
No 256
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=77.17 E-value=10 Score=23.62 Aligned_cols=33 Identities=9% Similarity=0.277 Sum_probs=21.6
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
-+.|.++++..++++|.+.|+.-+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666677777777777776666666665554
No 257
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=76.77 E-value=74 Score=33.09 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=75.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH--------------------------------
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESL-------------------------------- 181 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l-------------------------------- 181 (284)
|+..-+...|.+.|+.-.+.. .-|....-.+.+.|+....++.|..+
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~ 580 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG 580 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence 555555666666666554432 12455666666777777777777666
Q ss_pred ----HHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHH
Q 023326 182 ----WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS--AFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 182 ----~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~--a~~~~G~~d~a~~l~~~ 255 (284)
|..-.+ ..|.|...|-.+..+|...|.+.-|+++|.+.-. +.|+. +|.-.-. .-|..|...++...++.
T Consensus 581 aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 581 AVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLS-KYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred HHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 222221 2255888899999999999999999999987543 35543 2332222 25677888888877776
Q ss_pred hH
Q 023326 256 YL 257 (284)
Q Consensus 256 m~ 257 (284)
..
T Consensus 656 ii 657 (1238)
T KOG1127|consen 656 II 657 (1238)
T ss_pred HH
Confidence 65
No 258
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.44 E-value=50 Score=28.57 Aligned_cols=129 Identities=10% Similarity=0.112 Sum_probs=77.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCCHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-----------SISKRL 197 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-----------~~~~~t 197 (284)
++|-.|.+..+.+--.++.+-.+.+++.-+..-.-++| +...|++.+|...+..-+..... .|....
T Consensus 164 CAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~ 241 (333)
T KOG0991|consen 164 CAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLL 241 (333)
T ss_pred hHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHH
Confidence 44555555555444444444445556665555555555 66789999888877665443322 123333
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
---|+.. |..+++++|.+++.++-+.|+.|.... +++.+.+-.. +.++.+--+|.+..++-|
T Consensus 242 v~~ml~~-~~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~~---~~~E~~rlE~ikeig~th 303 (333)
T KOG0991|consen 242 VKKMLQA-CLKRNIDEALKILAELWKLGYSPEDII-TTLFRVVKNM---DVAESLRLEFIKEIGLTH 303 (333)
T ss_pred HHHHHHH-HHhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHhc---cHHHHHHHHHHHHHhhHH
Confidence 4555554 556899999999999999999986543 4555555443 334444445555555544
No 259
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=75.91 E-value=2.7 Score=32.57 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=27.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
+.+.|.-.+|..+|..|++.|-.||- |+.||...
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 56667777899999999999999985 77877654
No 260
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.57 E-value=71 Score=29.92 Aligned_cols=81 Identities=7% Similarity=0.064 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 023326 173 HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKL 251 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~ 251 (284)
++++.|..+.++-++.. |.++..|-.==..+...|++++|.--|++-... .| +...|..|+..|-..|.+.+|..
T Consensus 314 K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHhhchHHHHHH
Confidence 44555555555444432 223333322224566789999999999885543 54 77899999999999999998776
Q ss_pred HHHHhH
Q 023326 252 VLKKYL 257 (284)
Q Consensus 252 l~~~m~ 257 (284)
+-....
T Consensus 390 ~An~~~ 395 (564)
T KOG1174|consen 390 LANWTI 395 (564)
T ss_pred HHHHHH
Confidence 554433
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=75.50 E-value=36 Score=26.45 Aligned_cols=137 Identities=13% Similarity=0.117 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL-AFDKDHRADEAESLWNMILHTQTR-SISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~ 200 (284)
....+...-..+...+...++...+.........+.. ....... .+...|+++.|...+.+....... ......+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 172 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-AEALLALGALYELGDYEEALELYEKALELDPELNELAEALLA 172 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHH
Confidence 3344445555555566666666666666654333311 1111112 566667777777777766442110 012333344
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
....+...|+.++++..+.+....-..-+...+..+-..+...|..+.+...+....+..
T Consensus 173 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred hhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 444456666777777777665544211135566666666666666677776666665443
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=75.36 E-value=56 Score=30.84 Aligned_cols=85 Identities=6% Similarity=-0.050 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
...+...|..+=+...++|+++-|.+.|..... |..|+-.|.-.|+.+.-.++.+.-...| . +|
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~------~n 406 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D------IN 406 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HH
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C------HH
Confidence 334555666666669999999999999988754 6778888899999988777776655543 2 78
Q ss_pred HHHHHHHhCCChhHHHHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~ 220 (284)
....++...|++++..+++.+
T Consensus 407 ~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 407 IAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 888888888999999988875
No 263
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=75.16 E-value=13 Score=23.17 Aligned_cols=35 Identities=14% Similarity=0.194 Sum_probs=22.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL 167 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~ 167 (284)
...+.|.+.++..++++|.+.|+.-+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34556666677777777777776666666665554
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=74.97 E-value=9.9 Score=21.08 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+|..+-..|...|++++|++.|++..
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45566666666666666666666544
No 265
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=74.19 E-value=73 Score=29.36 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 228 PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 228 Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|.=-+.+++.++.-.|+.++|.+..++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34445677778888888888888888877643
No 266
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=73.55 E-value=49 Score=30.55 Aligned_cols=103 Identities=13% Similarity=0.107 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTL------------LLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~L------------l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
.+-..+-..|++++|..++.+.. +.||+++ +..|.-.+|+-.|.-+-..........++..
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~ 208 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQ 208 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHH
Confidence 34445667899999998887765 3466544 4567777888888777777766666554553
Q ss_pred -----HHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHH
Q 023326 197 -----LFSRMISLYDHHDMPNKIIEVFADMEELG-VRPDEDTVRRIAS 238 (284)
Q Consensus 197 -----tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~Pd~~ty~~ll~ 238 (284)
-|+.||....+.+.+=.+.+.|+..-+.| ++-|..-+.-.+.
T Consensus 209 ~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 209 ELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 39999999999999999999999998877 5566655555544
No 267
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.46 E-value=8.4 Score=23.67 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=14.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3455666666666666666655443
No 268
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=73.28 E-value=53 Score=27.32 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=15.3
Q ss_pred HcCCHHHHHHHHHHhHHhc
Q 023326 242 RVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~~ 260 (284)
+.|+++.|.++++-|.+-|
T Consensus 133 ~~~~~~~Ae~~~~~ME~lY 151 (204)
T COG2178 133 RKGSFEEAERFLKFMEKLY 151 (204)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 5689999999998887654
No 269
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=73.23 E-value=8.7 Score=34.05 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
+.+..-||..|..-.+.||+++|+.+++|-+..|+.-=..||-
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 4334447999999999999999999999999999764444443
No 270
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.87 E-value=21 Score=29.20 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=35.9
Q ss_pred hCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 207 HHDMPNKIIEVFADMEE-LGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~-~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..++.+......+..++ ....|+..+|..++.++...|+.++|.+++.++..-|.
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 44554444444444333 23567888888888888888888888777777776655
No 271
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.71 E-value=33 Score=29.27 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK--GQGATMGTYDTLLLA 168 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~Ll~~ 168 (284)
+...-..++..||-.|+|++|..-++-.-+. ...+-..+|..+|.+
T Consensus 34 da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 34 DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4445567788888888888887666654433 234445666666643
No 272
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.33 E-value=48 Score=27.69 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL---GVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~---g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
..+.|+- .|.+.|-++...+... +...--.|-.-|. ..|.++++.++.+..+. +-.+|...+.+|.+.|-+.|+
T Consensus 117 Wsr~~d~-~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGDQ-EALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCcH-HHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444443 4455555555554442 4443333333333 45666666665554432 235566666666666666666
Q ss_pred HHHHH
Q 023326 246 DDKQK 250 (284)
Q Consensus 246 ~d~a~ 250 (284)
.+.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 66553
No 273
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=71.99 E-value=55 Score=32.80 Aligned_cols=103 Identities=13% Similarity=0.127 Sum_probs=77.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 023326 154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTV 233 (284)
Q Consensus 154 g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty 233 (284)
.+.-|...|-.|--+....|+++.+-+.|++....-.. ....|+.+-..|..+|.-..|+.++++-....-.|+..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~--~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG--EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh--hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 35567888888888889999999999999887654332 4566999999999999999999999886544445766666
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHhHH
Q 023326 234 RRIASAFQ--RVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 234 ~~ll~a~~--~~G~~d~a~~l~~~m~~ 258 (284)
-.++...| +.|.++++..+-.+...
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~ 422 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAIS 422 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHH
Confidence 66665433 66788887777766665
No 274
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.71 E-value=73 Score=28.29 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.+...|...|+.++|..+++.+...--....+....=|..+.+.....+...+-..+-. .|.|...=-.+-..|...
T Consensus 173 ~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~ 249 (304)
T COG3118 173 LLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLV 249 (304)
T ss_pred HHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHc
Confidence 34445556666666666666555432222222222222333333333332333332222 244555555566667777
Q ss_pred CChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC
Q 023326 209 DMPNKIIEVFADMEEL--GVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~--g~~Pd~~ty~~ll~a~~~~G 244 (284)
|+.++|++.+-.+... |.. |...=..||..+.-.|
T Consensus 250 g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 250 GRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 7777777766555443 232 3333344555444444
No 275
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=71.63 E-value=47 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
-...+|..+.+.|+-++-.+++.++.+ .-.++....-.+-.+|.+.|+..++.+++.+--+.|.+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 345788888999998988889888875 34678888899999999999999999999998888865
No 276
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.57 E-value=54 Score=27.39 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=61.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhCCCh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR--SISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~--~~~~~tyn~lI~~~~~~G~~ 211 (284)
+.+.|+ ++|++.|-.+...+.--++...- -|..|.-..+.+++..++....+..-. .+|...+.+|.+.|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 555565 78999999999888665555444 445555578999999998888765433 34788899999999999999
Q ss_pred hHHH
Q 023326 212 NKII 215 (284)
Q Consensus 212 ~~A~ 215 (284)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 9986
No 277
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.27 E-value=12 Score=24.74 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
----+|.||...|+.|+|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444455555555555555444443
No 278
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.26 E-value=42 Score=33.48 Aligned_cols=29 Identities=14% Similarity=0.316 Sum_probs=18.9
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
|.+....-.|-..+.+.|+-++|.+.|-+
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 43445556667777777777777776544
No 279
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=70.24 E-value=74 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=14.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 208 HDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
.|+.++|++++..+....-.++..||..+-.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555555555555433333444444444433
No 280
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.21 E-value=45 Score=33.36 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+.-.+.+-.+.-+...|+..+|.++-.+.+ -||-..|--=+.+++..+++++-+++-..+.. | .-|.-.
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks----P---IGy~PF 750 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS----P---IGYLPF 750 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC----C---CCchhH
Confidence 333455566666788888888866544433 56777788888888888888776655554431 2 226677
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+.+|.+.|+.++|.+++-+.... . -...+|.+.|++.+|.++-.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHHHHH
Confidence 88888888888888877664211 1 56778888888888776543
No 281
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=69.64 E-value=33 Score=33.93 Aligned_cols=47 Identities=13% Similarity=0.149 Sum_probs=24.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSK--GQGATMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~Ll~~~~~~g~~ 175 (284)
.++++|..+|++.++.++++..... |-+.=...||.-|+.+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5555566666666665555555432 2222334455555555555544
No 282
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.50 E-value=6.8 Score=21.35 Aligned_cols=26 Identities=12% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+-.++.+.|+.++|.++|+++.+++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 34456667777777777777776653
No 283
>PHA02940 hypothetical protein; Provisional
Probab=69.23 E-value=65 Score=27.78 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 164 TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 164 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
.|..-|.+.+..++-..+-+++... ..+ |-.|+ -..-+++.+++-+++|.+..-....-||+.|..+
T Consensus 147 ~la~~yvq~vk~d~r~~~a~~l~ke-Ls~-----~~d~~---enepdle~d~keie~~lE~~~dl~rGtY~vL~~a---- 213 (315)
T PHA02940 147 LLAGRYVQDVKKDDRRTIANKLSKE-LSW-----TIDYQ---ENEPDLESDFKEIEEELEEKDDLSRGTYKVLKRA---- 213 (315)
T ss_pred HHHHHHHHHccccHHHHHHHHHHhh-hhH-----HHHHH---hcCcchhhhHHHHHHHHhccchhhhhHHHHHHHH----
Confidence 4455556666666644444444321 111 11111 2334577788888888777655556677776554
Q ss_pred CCHHHHHHHHHHhHHhc--CCCccccceeeeeccccccc
Q 023326 244 GQDDKQKLVLKKYLSKW--KYIHFKGERVRVRRDAWYES 280 (284)
Q Consensus 244 G~~d~a~~l~~~m~~~~--~~~~~~g~~~~~~~~~~~~~ 280 (284)
++.|+++| |++..||-+.-++.++|++.
T Consensus 214 ---------ld~m~ehy~kGi~~an~a~~~~~~daydad 243 (315)
T PHA02940 214 ---------LDLMKEHYWKGIRLANEAKAMIKRDAYDAD 243 (315)
T ss_pred ---------HHHHHHHHhhccccchhHHHHHHhhcccch
Confidence 45565443 45566666666777777764
No 284
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.62 E-value=8.1 Score=25.59 Aligned_cols=46 Identities=11% Similarity=0.020 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 175 ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
++...++.+.+....- |..---.+|.||...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~RH---D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRH---DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555533211 222245678888888888888888877653
No 285
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.47 E-value=17 Score=29.90 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=25.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
.++..|.++|.+++|.+++++..+. |+....-.-|...
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHH
Confidence 3445599999999999999998874 4444443333333
No 286
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=67.65 E-value=1e+02 Score=28.49 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+..+..+...|.+.+++.+|++.-+..+..+ .+|+-..=-==.+|...|+++.|+..|..+++. .|.|..+=+-|+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3455566667999999999999999888763 335544444446778889999999999999985 5778877788888
Q ss_pred HHHhCCChhHH-HHHHHHHHH
Q 023326 204 LYDHHDMPNKI-IEVFADMEE 223 (284)
Q Consensus 204 ~~~~~G~~~~A-~~l~~~M~~ 223 (284)
.--+.....+. -++|..|..
T Consensus 334 l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 77777666544 677888754
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=66.31 E-value=51 Score=24.42 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLS 152 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~ 152 (284)
..|....+....|++.....+|.+|.+.+++..|+++|+-.+.
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344444455556666666667777777777777776666654
No 288
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.93 E-value=23 Score=24.82 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=37.0
Q ss_pred hCCChhHHHHHHHHHHHCCCC-CCHH-HHHHHHHHHHHcCCHHHHHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGVR-PDED-TVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~-Pd~~-ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
...+.++|+..++...+.-.. |+-+ ++..|+.+|+..|++.++.+.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999887766544 4444 8999999999999999887654
No 289
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.72 E-value=11 Score=19.85 Aligned_cols=16 Identities=6% Similarity=0.081 Sum_probs=6.6
Q ss_pred HHHHhCCChhHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVF 218 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~ 218 (284)
..+...|++++|..++
T Consensus 9 ~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 9 RALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344444444444433
No 290
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=65.65 E-value=76 Score=28.81 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSK---GQGATMGTYDTLLLA--FDKDHRADEAESLWNMILH 187 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~ty~~Ll~~--~~~~g~~~~A~~l~~~m~~ 187 (284)
..++...-+.++.++|++.++++.+. --.|+.+.|.-.-.+ +...|+++++++++++..+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35556666667888888888888754 234666666544433 4456788888888777665
No 291
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.53 E-value=71 Score=28.49 Aligned_cols=103 Identities=9% Similarity=0.016 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCHHHHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCH-
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILH----TQTRSISKRLFSRMISLYDH--HDMPNKIIEVFADMEELGVRPDE- 230 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~----~~~~~~~~~tyn~lI~~~~~--~G~~~~A~~l~~~M~~~g~~Pd~- 230 (284)
-...+-.+-.-||+.++.+.+.+...+..+ .|.+- |+. +..+=-||.- ..-+++-++..+.|.+.|.--+-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~Ki-Dv~-l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRr 191 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKI-DVF-LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERR 191 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccch-hhH-HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhh
Confidence 345666777788888888888887766643 34442 443 2222233333 23356777888888888854332
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCc
Q 023326 231 ---DTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIH 264 (284)
Q Consensus 231 ---~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~ 264 (284)
.+|..+... ...++.+|-.+|-+....+....
T Consensus 192 NRyK~Y~Gi~~m--~~RnFkeAa~Ll~d~l~tF~S~E 226 (412)
T COG5187 192 NRYKVYKGIFKM--MRRNFKEAAILLSDILPTFESSE 226 (412)
T ss_pred hhHHHHHHHHHH--HHHhhHHHHHHHHHHhccccccc
Confidence 255554433 33467777777776665555443
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.31 E-value=89 Score=31.79 Aligned_cols=83 Identities=11% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|..-|-+-... +.| ..+|.-|.+..++.+--.+++.+.+.|... ...-+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHH
Confidence 66788888888777654421 222 335566677777777777888888888763 3334788888888888877
Q ss_pred HHHHHHHHHHCC
Q 023326 214 IIEVFADMEELG 225 (284)
Q Consensus 214 A~~l~~~M~~~g 225 (284)
-.+..+.-. .|
T Consensus 450 L~efI~~~~-~g 460 (933)
T KOG2114|consen 450 LTEFISKCD-KG 460 (933)
T ss_pred HHHHHhcCC-Cc
Confidence 777666544 44
No 293
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.84 E-value=19 Score=19.71 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+|..+-..|...|++++|++.|++-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555666666666666666654
No 294
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.03 E-value=75 Score=25.51 Aligned_cols=91 Identities=11% Similarity=0.079 Sum_probs=52.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT---MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
.-.+.++.+++..+++-|.-. +|. ..+|-..+ +...|++.+|..+|+++.+... ... |-.-+-++|-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~~---~~p-~~kALlA~CL~~ 90 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERAP---GFP-YAKALLALCLYA 90 (160)
T ss_pred HHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccCC---CCh-HHHHHHHHHHHH
Confidence 344567888888888888754 444 34454444 5677888888888888765432 111 444444444443
Q ss_pred ChhHHHHHH-HHHHHCCCCCCHH
Q 023326 210 MPNKIIEVF-ADMEELGVRPDED 231 (284)
Q Consensus 210 ~~~~A~~l~-~~M~~~g~~Pd~~ 231 (284)
.-|-....+ +++.+.|--|+..
T Consensus 91 ~~D~~Wr~~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGADPDAR 113 (160)
T ss_pred cCChHHHHHHHHHHhcCCChHHH
Confidence 333333332 3455555445444
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.01 E-value=72 Score=25.34 Aligned_cols=90 Identities=9% Similarity=0.038 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 137 RGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
.++.+++..+++.|.-.. -.|...+|-..| +...|++++|.++|+++.+.+... .|-.-+.++|-...-|-..
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~----p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP----PYGKALLALCLNAKGDAEW 96 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc----hHHHHHHHHHHHhcCChHH
Confidence 677888888888887542 223345555555 556788888888888887665321 2666666666655555444
Q ss_pred HHH-HHHHHCCCCCCHHH
Q 023326 216 EVF-ADMEELGVRPDEDT 232 (284)
Q Consensus 216 ~l~-~~M~~~g~~Pd~~t 232 (284)
..+ +++.+.|-.|+...
T Consensus 97 r~~A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 97 HVHADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHHHHhCCCHhHHH
Confidence 432 34555555555554
No 296
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=63.38 E-value=1.7e+02 Score=29.48 Aligned_cols=83 Identities=6% Similarity=0.007 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.+.+++-++.+...+++..|-+| -|+-.++++.|++..++..+.+-.-+...|..|.-.+...+++.+|..+.+.-.
T Consensus 463 slqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 344456666555443344434333 466678999999999999888777788888888888888899999999999888
Q ss_pred HhcCC
Q 023326 258 SKWKY 262 (284)
Q Consensus 258 ~~~~~ 262 (284)
++|+.
T Consensus 541 ~E~~~ 545 (799)
T KOG4162|consen 541 EEFGD 545 (799)
T ss_pred HHhhh
Confidence 88775
No 297
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.08 E-value=49 Score=27.00 Aligned_cols=53 Identities=11% Similarity=0.011 Sum_probs=30.2
Q ss_pred HcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 136 KRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..++.+......+++.+. ...|+..+|..++.++...|+.++|+++..++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444443332 34566666666666666666666666666666554
No 298
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=62.59 E-value=1.1e+02 Score=26.96 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.++..+.+.++..+.++.+..|.. +..-...|..+...|++..|.++..+..+. .. ...-|+++=.. .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~--~l~~~~c~~~L---~ 170 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE--ELKGYSCVRHL---S 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH--hcccchHHHHH---h
Confidence 355556666666666666666653 345566677777889999988887766543 11 00001111110 1
Q ss_pred CChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 209 DMPNKIIEVFADMEELG-----VRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g-----~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
.++++.....+++.+.. ...|...|..++.||.-.|+.+.+.
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 23333444444433221 2578889999999998888776544
No 299
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.44 E-value=1.2e+02 Score=29.82 Aligned_cols=15 Identities=20% Similarity=0.198 Sum_probs=6.4
Q ss_pred HHHHcCCHHHHHHHH
Q 023326 239 AFQRVGQDDKQKLVL 253 (284)
Q Consensus 239 a~~~~G~~d~a~~l~ 253 (284)
+|-..|+++++.+++
T Consensus 730 ~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 730 AYFLSGDYEECLELL 744 (794)
T ss_pred HHHHcCCHHHHHHHH
Confidence 333444444444444
No 300
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=62.26 E-value=1.3e+02 Score=27.63 Aligned_cols=117 Identities=14% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC----CCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQG----ATM----------GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~----p~~----------~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+.+.|.+++|..=|+..++..-. -++ ......+..+.-.|+...|....+.+++. .|.|...|-
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l~~ 193 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASLRQ 193 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHHHH
Confidence 67899999999999998876321 111 11222334455678888899888888874 566888788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.--.+|...|++.+|+.=++..-... .-++.++--+-.-+-+.|+.+......
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~i 246 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEI 246 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence 88888888888888875444322221 123333333344444555555544433
No 301
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.01 E-value=90 Score=25.74 Aligned_cols=144 Identities=12% Similarity=0.046 Sum_probs=83.8
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLAFDKDHRADEAESLWNMILHTQTRSI 193 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 193 (284)
|+.-...-+-..|...|+ +.+.|..++|+.-|.++.+.|..--.+ .-.-.-......|+...|...|++.-.....|.
T Consensus 50 w~~s~as~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 50 WQTSRASKSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred hcccccccchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 443333334444554444 556677788888888888877542211 111112235667888888888888866555442
Q ss_pred CHHHHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 194 SKRLFSRMIS--LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 194 ~~~tyn~lI~--~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..----|=. .+..+|-+++...-.+-+-..|-.--...=..|--+--+.|++.+|.+.|..+.+.
T Consensus 129 ~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 129 IGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 2111111222 24567777777776666655543334444455555666888888888888877653
No 302
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.78 E-value=1.2e+02 Score=27.09 Aligned_cols=126 Identities=13% Similarity=0.114 Sum_probs=82.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH---HHHHcCCCCCCHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATM-------GTYDTLLLAFDKDHRADEAESLWN---MILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~-------~ty~~Ll~~~~~~g~~~~A~~l~~---~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+.+++++|++++.+++..|+..|. .|...|...|...|+...-.+... +....-..|..+.+--+||.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 66778999999999999999988775 455567788888887766444432 22222234445555677777
Q ss_pred HHHhCC-ChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 204 LYDHHD-MPNKIIEVFADMEELGVRPD-----EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 204 ~~~~~G-~~~~A~~l~~~M~~~g~~Pd-----~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-+-... .++.-+++.....+-..+-. ..-=.-+|..+-+.|.+.+|..+..-+..+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 666543 45666666665443222211 112235778889999999999888766533
No 303
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.37 E-value=71 Score=27.35 Aligned_cols=59 Identities=12% Similarity=0.080 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH----HCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADME----ELG-VRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~----~~g-~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
---|-..|.+.|++++|+++|+.+. ..| ..+...+...++.++.+.|+.+....+-=+|
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456688999999999999999873 456 3467778888888899999998877765554
No 304
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=60.85 E-value=26 Score=19.23 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 231 DTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 231 ~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|..+-..|...|++++|...|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46788889999999999999999987754
No 305
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.36 E-value=64 Score=30.84 Aligned_cols=115 Identities=10% Similarity=0.006 Sum_probs=68.9
Q ss_pred cCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHH
Q 023326 137 RGQWLRV-IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKII 215 (284)
Q Consensus 137 ~g~~~~A-~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~ 215 (284)
.|++..| .++|+-+....-.|+.+-.-+.| +...|+++.+...+...... ......+-.+++...-+.|+.++|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3443333 45566666666667776665555 45667787777776544322 2224455677888888888888888
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 216 EVFADMEELGVR-PDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 216 ~l~~~M~~~g~~-Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+-+-|....++ |...+..+ -.--..|.+|++...|++..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa--~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAA--GSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHhccccCChhheeeec--ccHHHHhHHHHHHHHHHHHh
Confidence 888887777665 33333221 12234566777766666554
No 306
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=59.99 E-value=27 Score=19.00 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=13.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
|..+-..|.+.|++++|++.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444455555666666666555543
No 307
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=59.68 E-value=75 Score=24.89 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
-.++..+..+++.-.|.++++++.+.|...+..|---.|+.+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3444444444444445555555544444444444333333333333
No 308
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=59.66 E-value=79 Score=24.39 Aligned_cols=125 Identities=15% Similarity=0.145 Sum_probs=82.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
.+...|++++|...|.......- ......+......+...++.+.+...+.......... ....+..+-..+...|+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHccc
Confidence 67788888888888888755221 1234445555555667788888888888887753321 35667788888888888
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++.|...+.......-. ....+..+...+...|..+.+...+.+..+.
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888876654222 2344444444444667778787777766544
No 309
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=59.12 E-value=1.7e+02 Score=27.90 Aligned_cols=129 Identities=9% Similarity=0.025 Sum_probs=79.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCCHHH---------------HHHHHHHHH-
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKG----QGATMGTYDTLLLAFDKDHRADE---------------AESLWNMIL- 186 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p~~~ty~~Ll~~~~~~g~~~~---------------A~~l~~~m~- 186 (284)
-+.....+...|++.++..++++|...= +..|+.+|+.++-.++++=-++. +.-+..+|.
T Consensus 131 ~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 131 DEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 3577888999999999999999988654 44899999997777766422211 111111111
Q ss_pred ------------------------------------------HcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 187 ------------------------------------------HTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 187 ------------------------------------------~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..+..|...-+--.|+..+.+ +.+++..+-+.+...
T Consensus 211 ~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~ 288 (549)
T PF07079_consen 211 FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASS 288 (549)
T ss_pred HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHH
Confidence 111112111112333444444 556666655555443
Q ss_pred CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 225 GVRP----DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 225 g~~P----d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+.+ -..+|..+++...+.++..+|.+.+.-++
T Consensus 289 ~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 289 KIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3322 34589999999999999999988887654
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=59.04 E-value=90 Score=24.81 Aligned_cols=67 Identities=24% Similarity=0.219 Sum_probs=41.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD 172 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~ 172 (284)
.+..++++.+.+.|....--.. .+.++-..| +...|+|++|+++|++..+.+.. ..|..-|.++|-.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL~ 89 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLK--ELDMFDGWL--LIARGNYDEAARILRELLSSAGA---PPYGKALLALCLN 89 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCcc--ccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC---chHHHHHHHHHHH
Confidence 4666677888887764332222 233333332 77889999999999999887532 2455555555543
No 311
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=58.83 E-value=1.6e+02 Score=27.55 Aligned_cols=109 Identities=16% Similarity=-0.010 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhC---CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR--LFSRMISLYDHH---DMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~--tyn~lI~~~~~~---G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
...++|...|..|+++.|.++++.-.+.....+++. .--.|+.+-+.. -|...|.+.- .+.....||.+--..
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A--~~a~KL~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA--LEANKLAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH--HHHhhcCCccchHHH
Confidence 445556666666666666666555444433322221 112222221111 1222222211 223345666654332
Q ss_pred H-HHHHHHcCCHHHHHHHHHHhHHhcCCCccccceee
Q 023326 236 I-ASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERVR 271 (284)
Q Consensus 236 l-l~a~~~~G~~d~a~~l~~~m~~~~~~~~~~g~~~~ 271 (284)
+ -.++.+.|++.++-.+++-+-+...-..|--.+|+
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ 304 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR 304 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH
Confidence 2 35788889999998888888776554444444443
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.74 E-value=20 Score=21.98 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
|-.+|...|+.+.|.+++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567888888888888888887543
No 313
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.39 E-value=50 Score=25.55 Aligned_cols=45 Identities=4% Similarity=0.080 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+-++.+...++.| +..+-..-+.++-+.+|+--|+.+|+-.+.+
T Consensus 69 rkglN~l~~yDlVP-~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVP-SPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34456666666665 5555667777777777777777777766543
No 314
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=57.72 E-value=36 Score=25.56 Aligned_cols=89 Identities=10% Similarity=0.107 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 141 LRVIQVAKWMLSK-GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 141 ~~A~~l~~~M~~~-g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
++|.+.+.++++. |+.| |+..=-++-..+.....++. ..+...+....+..||. |++++....+
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-----~~~~~d~g~e~~~~t~~---------Ge~~~~~~~l 71 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-----EDIKDDSGLELNWKTFT---------GEYDDIYEAL 71 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-----CccCCCCCeEEeeeeec---------CchHHHHHHH
Confidence 5677888887754 8999 77666566555554443331 11122222223444443 9999988888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 219 ADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
-++.. |...|..++...+.+..+.|
T Consensus 72 l~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 72 LKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 88777 77889999999888876554
No 315
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=57.66 E-value=25 Score=34.68 Aligned_cols=93 Identities=9% Similarity=0.071 Sum_probs=50.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH---------HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHcCC
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVA---------KWMLSKGQGATMGTYDTLLLAFDKDHRADEAESL--WNMILHTQT 190 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~---------~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l--~~~m~~~~~ 190 (284)
+-.+.|..-+--|...|.+++|.++- +.+... ..++--|++-=++|.+..+..--+-+ +++|.+.|-
T Consensus 554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge 631 (1081)
T KOG1538|consen 554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE 631 (1081)
T ss_pred cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence 44556666666677777777776542 111111 12344556666666666555442222 345555555
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 191 RSISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 191 ~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
.| +.. .+-..++-.|.+.+|-++|.+
T Consensus 632 ~P-~~i---LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 632 TP-NDL---LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred Cc-hHH---HHHHHHHhhhhHHHHHHHHHH
Confidence 55 332 234556667777777777765
No 316
>PRK11906 transcriptional regulator; Provisional
Probab=57.10 E-value=1.8e+02 Score=27.61 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHH-cCCCCCH-HHHHHH--------HHHHHh-cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 139 QWLRVIQVAKWMLS-KGQGATM-GTYDTL--------LLAFDK-DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 139 ~~~~A~~l~~~M~~-~g~~p~~-~ty~~L--------l~~~~~-~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
..+.|+.+|.+-.. +...|+- ..|..+ +.+... ..+..+|.++-+.-++.+ +.|...-..+-.+...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHh
Confidence 35677888887762 2355552 222221 111111 234555666666666654 4466655555555577
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
.|+++.|..+|++-... .||.. +|...-..+.-.|+.++|.+.+++
T Consensus 351 ~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 351 SGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77788888888875544 45433 333333334557778888887776
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=56.69 E-value=1e+02 Score=24.85 Aligned_cols=101 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC-CChhHHHHHHHHHH
Q 023326 144 IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-DMPNKIIEVFADME 222 (284)
Q Consensus 144 ~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-G~~~~A~~l~~~M~ 222 (284)
++..+.+.+.|+.|+...|..||+.+.+.|++.. +..+++.++.+++...=..|++.-.+. .-.+-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445566678899999999999999999998766 556677777775554333333222111 12445555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
. .+..++..+-..|++-+|.++....
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 2 3567777888888888888887664
No 318
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.61 E-value=26 Score=31.16 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=19.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY 162 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty 162 (284)
+..|+.-.+.|++++|+.|++|-++.|..--..||
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 35555556666666666666666555554333343
No 319
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=56.41 E-value=1.3e+02 Score=26.01 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
|-..-|+..+..+ +.|++++|..-|+.+..+- ..| ...+.-.++.++-+.++.++|....++.+..+-..+|.- |-
T Consensus 33 p~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 33 PASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 5555566555543 5677777777777777542 112 345566666677777777777777777776655543443 55
Q ss_pred HHHHHHH
Q 023326 200 RMISLYD 206 (284)
Q Consensus 200 ~lI~~~~ 206 (284)
.-|.|.+
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 5566555
No 320
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=55.46 E-value=30 Score=29.15 Aligned_cols=84 Identities=14% Similarity=0.154 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHcCCC--C-----CHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQG--A-----TMGTYDTLLLAFDKDH---------RADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~--p-----~~~ty~~Ll~~~~~~g---------~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
..+.|+.++.+|--..++ | ...-|-.+-.+|++.| +++.-.++++..++.|+.-.-...|+++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 467888888888644322 2 3567888888998877 45666777777788887644456688888
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~ 222 (284)
+--...-+.++..++|..|+
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 77666777788887777665
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.16 E-value=98 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 167 LAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
..|..+|.+.+|-++....+.. .|.+...|-.+|..++..||--.|.+-++.|
T Consensus 287 ~~yle~g~~neAi~l~qr~ltl--dpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTL--DPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 4455566666666666655543 3445555666666666666655555555544
No 322
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.02 E-value=1e+02 Score=24.27 Aligned_cols=84 Identities=8% Similarity=0.059 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C--CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG---Q--GATMGTYDTLLLAFDKDHR-ADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g---~--~p~~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
..+++|.-...-+.+...+++++.+..-. + .-+.-+|++++.+.++... --.+..+|+-|.+.+.+. +..-|-
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~-t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEF-TPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCC-CHHHHH
Confidence 34677777777788888888887774321 0 2345689999999988777 555789999999877764 888899
Q ss_pred HHHHHHHhCCC
Q 023326 200 RMISLYDHHDM 210 (284)
Q Consensus 200 ~lI~~~~~~G~ 210 (284)
.||.++.+.-.
T Consensus 120 ~li~~~l~g~~ 130 (145)
T PF13762_consen 120 CLIKAALRGYF 130 (145)
T ss_pred HHHHHHHcCCC
Confidence 99999877533
No 323
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.79 E-value=2.1e+02 Score=27.75 Aligned_cols=130 Identities=13% Similarity=0.171 Sum_probs=78.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
|-...-++|..+.++-.+.-...+-.+|+.-| -+-..|-.++..|..+ .-++-..+|+.+++.... |++.=..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHHH
Confidence 33344467777888888888888888887764 3567777888887777 444556777777665443 333222222
Q ss_pred HHHHh-------------------------------------CCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcC
Q 023326 203 SLYDH-------------------------------------HDMPNKIIEVFADME-ELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 203 ~~~~~-------------------------------------~G~~~~A~~l~~~M~-~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
.-|-+ ..+.|..+.+..++. ..|..--.+.+.-+-.-|....
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 22222 123333333333332 2345555566677777888888
Q ss_pred CHHHHHHHHHHhH
Q 023326 245 QDDKQKLVLKKYL 257 (284)
Q Consensus 245 ~~d~a~~l~~~m~ 257 (284)
++++|.+++..+.
T Consensus 220 N~~eai~Ilk~il 232 (711)
T COG1747 220 NWTEAIRILKHIL 232 (711)
T ss_pred CHHHHHHHHHHHh
Confidence 9999998887443
No 324
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=54.70 E-value=91 Score=25.94 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=54.5
Q ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHhcC--CHHHHHHHHHHHHHcCCCCCCH--HHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK--GQGATMGTYDTLLL-AFDKDH--RADEAESLWNMILHTQTRSISK--RLFSRMISLYD 206 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~--g~~p~~~ty~~Ll~-~~~~~g--~~~~A~~l~~~m~~~~~~~~~~--~tyn~lI~~~~ 206 (284)
..+.|++++|.+-++.+.+. -++--...|.-+.. +++..+ .+-+|..++.-+.+.....++. +.+-..|.|.|
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~ 118 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLA 118 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHH
Confidence 77788888888888877543 12222345666665 566554 4566777777666554332110 11222333333
Q ss_pred --------------hCCChhHHHHHHHHHHHC
Q 023326 207 --------------HHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 207 --------------~~G~~~~A~~l~~~M~~~ 224 (284)
+.|+++.|...++-|+..
T Consensus 119 D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 119 DAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 469999999999998753
No 325
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=54.55 E-value=1.8e+02 Score=27.33 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=70.6
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK---GQGATMGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
+.+..|..-+.. ..++|...+|.+.|.+-+.. ...|++..|...-.+..+.|+.++|..--++-.
T Consensus 247 k~le~~k~~gN~------------~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 247 KKLEVKKERGND------------AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHHHhhhhh------------HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 444457777777 89999999999999998754 467788888888888899999999988877765
Q ss_pred HcCCCCCCHHHHHHHHHHHHh--CCChhHHHHHHHHH
Q 023326 187 HTQTRSISKRLFSRMISLYDH--HDMPNKIIEVFADM 221 (284)
Q Consensus 187 ~~~~~~~~~~tyn~lI~~~~~--~G~~~~A~~l~~~M 221 (284)
.. . +...+-.|..+-|+ .+++++|.+-|++-
T Consensus 315 ~i--D--~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 315 KI--D--SSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred hc--C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 1 34444555544444 46778887777754
No 326
>PRK09857 putative transposase; Provisional
Probab=54.52 E-value=95 Score=27.50 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
+.+-+..+.++...+..++.. +..++.-..+.++.++-.++++.+.+. .. .......++..-+-+.|..++++++..
T Consensus 188 l~~~~~~l~~ll~~~~~~~~~-~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~-~~~e~iMTiAEqL~qeG~qe~~~~ia~ 264 (292)
T PRK09857 188 LMGLVEQMACLLSSGYANDRQ-IKGLFNYILQTGDAVRFNDFIDGVAER-SP-KHKESLMTIAERLRQEGEQSKALHIAK 264 (292)
T ss_pred HHHHHHHHHHHHHhccCCHHH-HHHHHHHHhhccccchHHHHHHHHHHh-Cc-cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334333333322 456666656777777777787777665 22 122233455566666777778888888
Q ss_pred HHHHCCCCCCH
Q 023326 220 DMEELGVRPDE 230 (284)
Q Consensus 220 ~M~~~g~~Pd~ 230 (284)
+|...|+.++.
T Consensus 265 ~ml~~g~~~~~ 275 (292)
T PRK09857 265 IMLESGVPLAD 275 (292)
T ss_pred HHHHcCCCHHH
Confidence 88888887664
No 327
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.45 E-value=31 Score=26.34 Aligned_cols=42 Identities=14% Similarity=0.100 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++.++|..|...|+.- -..-|...-.-+...|++++|.++|.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5666666666666543 33355555555566666666666654
No 328
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.14 E-value=1.4e+02 Score=27.11 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCC---CHHHHHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLS----KGQGATMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTRSI---SKRLFSRMIS 203 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~----~g~~p~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~---~~~tyn~lI~ 203 (284)
.-||+.|+-+.|++.++...+ .|.+.|++.+.+-|..+.-.. -+.+-.+..+.|++.|+.=. -..+|--|-.
T Consensus 112 eYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ 191 (393)
T KOG0687|consen 112 EYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC 191 (393)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH
Confidence 449999999999999987554 488999988887776654433 34555566777788887510 1223433322
Q ss_pred HHHhCCChhHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~ 222 (284)
. ...++.+|-++|-+..
T Consensus 192 m--svR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 192 M--SVRNFKEAADLFLDSV 208 (393)
T ss_pred H--HHHhHHHHHHHHHHHc
Confidence 2 2357888888887754
No 329
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=53.78 E-value=1.5e+02 Score=25.90 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHH-HcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 129 KALRILR-KRGQWLRVIQVAKWMLSKGQ----GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 129 ~~i~~~~-~~g~~~~A~~l~~~M~~~g~----~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.++...| ..+-.++|.+.|+.....+. ..+...-..++....+.|..+.-..+++.... ..+...-+.++.
T Consensus 134 ~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~ 209 (324)
T PF11838_consen 134 LLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLS 209 (324)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHH
Confidence 3355555 12236788999998887522 34555666777777777776664444444432 336666899999
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCH--HHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELG-VRPDEDTVRRIASAFQRVGQD--DKQKLVLK 254 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~~G~~--d~a~~l~~ 254 (284)
+.+...+.+...++++.....+ +.+.. ...++.++...+.. +.+.+.+.
T Consensus 210 aLa~~~d~~~~~~~l~~~l~~~~v~~~d--~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 210 ALACSPDPELLKRLLDLLLSNDKVRSQD--IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHTT-S-HHHHHHHHHHHHCTSTS-TTT--HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred hhhccCCHHHHHHHHHHHcCCcccccHH--HHHHHHHHhcCChhhHHHHHHHHH
Confidence 9999999999999999888765 55544 34455555534433 55555443
No 330
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.69 E-value=2.1e+02 Score=27.51 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=55.1
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CCHHHHHHHHHHHHhCCChhHHHH
Q 023326 149 WMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS------------ISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 149 ~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~------------~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.+.+.|+..+......++... .|++..|..+++++...|... .+....-.|+.+... |+.+++++
T Consensus 190 il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~ 266 (509)
T PRK14958 190 LLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLG 266 (509)
T ss_pred HHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHH
Confidence 345678777766666665443 589999999998877654211 122333455555544 99999999
Q ss_pred HHHHHHHCCCCCCHH
Q 023326 217 VFADMEELGVRPDED 231 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ 231 (284)
++++|.+.|..|...
T Consensus 267 ~~~~l~~~g~~~~~i 281 (509)
T PRK14958 267 CVTRLVEQGVDFSNA 281 (509)
T ss_pred HHHHHHHcCCCHHHH
Confidence 999999999888644
No 331
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.54 E-value=1.6e+02 Score=26.14 Aligned_cols=121 Identities=12% Similarity=0.134 Sum_probs=82.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
....|++.+|..+|+......-. +...--.|...|...|+++.|..+++.+-...-.. ....-..=|..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhcCCC
Confidence 77889999999999988765322 23455677888999999999999999876543221 22222334555666666665
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..++-.+... .| |..-=-.+-..+...|+.+.|.+.+-.+.++
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555433 35 5555566778889999999988766555543
No 332
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=50.84 E-value=1.5e+02 Score=27.84 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=87.3
Q ss_pred HHHcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLS----KGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMI----LHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~----~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m----~~~~~~~~~~~tyn~lI~~ 204 (284)
|.-.|++++|+...+.=+. -|-+. --..+..|-+++.-.|.++.|.+.|..- ++.|-+.......-+|-..
T Consensus 205 yYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 205 YYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred eeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 5567899999887765322 23222 2356777888888889999988886543 4554443344455667778
Q ss_pred HHhCCChhHHHHHHHHH----HHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 205 YDHHDMPNKIIEVFADM----EELG-VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M----~~~g-~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|.-..++++|++++.+= ++.+ ..-....|.+|-.+|...|..++|+.+.+.-.
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 88888899999987753 2222 33467799999999999999999998876554
No 333
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.77 E-value=2.3e+02 Score=29.00 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD----KDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~----~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
..+...-|..+++...++-|+.+-+. .+. +..+--.+...|+ +.|++++|..-+-+-+.. ..| .
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~------s 401 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP------S 401 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh------H
Confidence 34556778889999999999887543 333 3344445555544 579999998887665543 233 4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
.+|.-|-....+.+--.+++.+-+.|+. +...-+.||.+|.+.++.++-.++.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 5677787778888888889999999977 444457899999999999887666543
No 334
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=50.68 E-value=45 Score=27.78 Aligned_cols=59 Identities=7% Similarity=0.105 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTR-------------SISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
=-++|..|.+..++.+++++++.|.+..+. .+-...-|.....|.+.|.+|.|+.++++
T Consensus 135 GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 135 GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 346778888888999999998888665443 11223457778888888888888888774
No 335
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.61 E-value=65 Score=32.30 Aligned_cols=87 Identities=11% Similarity=0.008 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
--|.+--+.-+...|+-.+|.++-.+.. . +|...|-.=|.+++..+++++-+++-+.++. .+-|.-.+.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----i-pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe 752 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----I-PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVE 752 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC----C-cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHH
Confidence 3455556666777888889888776543 3 4999999999999999999999988777652 344566788
Q ss_pred HHHHcCCHHHHHHHHHHh
Q 023326 239 AFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m 256 (284)
+|.+.|+.++|.+++.+.
T Consensus 753 ~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred HHHhcccHHHHhhhhhcc
Confidence 999999999999887544
No 336
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=49.55 E-value=95 Score=22.23 Aligned_cols=65 Identities=8% Similarity=0.095 Sum_probs=32.0
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
.++++.+.+.|+. +..-.+.+-.+--..|+.+.|.+++..+. .| |+ -|...++++...|+-+-|.
T Consensus 22 ~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhh
Confidence 4455566665544 22223333333334466666666666655 32 22 3455566666666554443
No 337
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.53 E-value=21 Score=27.82 Aligned_cols=31 Identities=6% Similarity=0.105 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.|.-..|-.+|..|++.|-.|+| |+.|+...
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd---W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD---WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc---HHHHHHHh
Confidence 35556677888888888876644 77777653
No 338
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=49.43 E-value=1.9e+02 Score=25.66 Aligned_cols=90 Identities=13% Similarity=0.114 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF-- 240 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~-- 240 (284)
..=|.+++..+++.++....-+--+.--+- ...+.-.-|-.|.+.|.+..+.++-..-...--.-+.-.|.++..-|
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEkl-PpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKL-PPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 344789999999988776544333222221 23335667888999999999999988876543333333477766655
Q ss_pred ---HHcCCHHHHHHHH
Q 023326 241 ---QRVGQDDKQKLVL 253 (284)
Q Consensus 241 ---~~~G~~d~a~~l~ 253 (284)
.=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 4569999998876
No 339
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.95 E-value=26 Score=33.70 Aligned_cols=39 Identities=10% Similarity=-0.084 Sum_probs=26.2
Q ss_pred HHcCCHHHHHHHHHHhHHhcCCCccccceeeeecccccccC
Q 023326 241 QRVGQDDKQKLVLKKYLSKWKYIHFKGERVRVRRDAWYESG 281 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~~~~~~~~g~~~~~~~~~~~~~~ 281 (284)
++...+|+-.++|++|.+ +..-.--+|||.+-+-=.++|
T Consensus 314 ~R~~~vEenl~iw~EM~k--Gs~~Gl~~CvRaKIdm~s~Nk 352 (712)
T KOG1147|consen 314 CRSNSVEENLRIWEEMKK--GSEKGLKCCVRAKIDMSSPNK 352 (712)
T ss_pred ccCCCHHHHHHHHHHHhc--cchhhhhhheeeeecccCCCc
Confidence 455678899999999987 334444457877766544443
No 340
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=48.95 E-value=55 Score=24.27 Aligned_cols=90 Identities=11% Similarity=0.078 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 141 LRVIQVAKWMLSK-GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 141 ~~A~~l~~~M~~~-g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
++|.+.+.+++.. |+.| |+..=-++...+.....+..+ .+...+....+..||. |+++.....+
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~-----~~~~d~~~E~~~~T~~---------Ge~~~i~~al 70 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVA-----DIKLDGNVEIDWYTFA---------GEYGDIYLAL 70 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCcc-----ccCCCCCeEEEeeeec---------CchHHHHHHH
Confidence 5788888888865 8999 776655555555443333311 1111222223444443 8888888877
Q ss_pred HHHH--HCCCCCCHHHHHHHHHHHHHcC
Q 023326 219 ADME--ELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 219 ~~M~--~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
-++. ..|...|...+...+.+..+.|
T Consensus 71 Lkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 71 LKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 6655 6778889888888888876655
No 341
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=48.83 E-value=1.6e+02 Score=24.65 Aligned_cols=104 Identities=13% Similarity=0.064 Sum_probs=82.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC---CCCCH
Q 023326 154 GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG---VRPDE 230 (284)
Q Consensus 154 g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g---~~Pd~ 230 (284)
...|++.---.|-.+....|+..+|...|.+-.. |....|....-.+-.+....+++..|...++++.+.. -.||.
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 3467777777888999999999999999998775 4444577778888888888999999999999987653 45654
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 231 DTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 231 ~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.-.+-..|...|..++|+.-|+.....|
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 3455677889999998888888776654
No 342
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.71 E-value=2.3e+02 Score=26.34 Aligned_cols=104 Identities=19% Similarity=0.104 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHc---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------------CCCHHHH
Q 023326 140 WLRVIQVAKWMLSK---GQ-GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-----------------SISKRLF 198 (284)
Q Consensus 140 ~~~A~~l~~~M~~~---g~-~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-----------------~~~~~ty 198 (284)
.++...+++..... |+ ..+......++..+ .|++..+..+++.....+.. ......+
T Consensus 153 ~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It~~~v~~~~~~~~~~~d~~~~~~ 230 (413)
T PRK13342 153 EEDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSITLELLEEALQKRAARYDKDGDEH 230 (413)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCCHHHHHHHHhhhhhccCCCccHH
Confidence 35555666554322 33 34444444444332 56777666666554322100 0011123
Q ss_pred HHHHHHHHh---CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 199 SRMISLYDH---HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 199 n~lI~~~~~---~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
--+|+++.+ .++.+.|+..+..|.+.|..|..+.=..++.++-..|.
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 344455544 58999999999999999988887776666666655554
No 343
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=48.39 E-value=34 Score=17.07 Aligned_cols=26 Identities=8% Similarity=0.050 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+|..+-..|...|++++|...|++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 35555666666677777776666543
No 344
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=47.15 E-value=1.8e+02 Score=24.81 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC----CCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTR----SISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
-.-|.+.|++++|.++|+.+...+.. .....+-..+..++.+.|+.++.+.+--+|
T Consensus 185 A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34466677777777777776544332 112333455666667777777776665554
No 345
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=47.14 E-value=3.1e+02 Score=27.64 Aligned_cols=88 Identities=13% Similarity=0.039 Sum_probs=59.2
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CCHHHHHHHHHHHHh
Q 023326 141 LRVIQVAKWM-LSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS------------ISKRLFSRMISLYDH 207 (284)
Q Consensus 141 ~~A~~l~~~M-~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~------------~~~~tyn~lI~~~~~ 207 (284)
++....+... .+.|+.-+......|+... .|++..+..++++++..+... .+......|+.++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 4444445443 4568777777776666554 589999999998877643210 122334556666665
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
|+...+++++++|...|+.+..+
T Consensus 259 -~d~~~al~~l~~L~~~G~d~~~~ 281 (709)
T PRK08691 259 -QDGAALLAKAQEMAACAVGFDNA 281 (709)
T ss_pred -CCHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999998876543
No 346
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=47.13 E-value=46 Score=22.59 Aligned_cols=38 Identities=11% Similarity=0.191 Sum_probs=25.1
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
-.|+.+++.+++++..+.|+.|..+-...+.-+..+.|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34777777777777777777777776666666655444
No 347
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=46.26 E-value=1.5e+02 Score=23.72 Aligned_cols=106 Identities=11% Similarity=0.055 Sum_probs=56.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKA-LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~-i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++++.+++.|..+ .|.......+ --.+.+.|+|.+|+++|+++.+.+ |..-.-..|+..|... .-+.
T Consensus 23 ~~~~~D~e~lL~ALrvL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~-~~D~ 94 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYA-LGDP 94 (160)
T ss_pred cCChHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHH-cCCh
Confidence 45666778888887643 3433333211 122778899999999999987663 3333334444444332 2222
Q ss_pred HHH-HHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 178 AES-LWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 178 A~~-l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.++ .-+++.+.+..| +. -.++..+-...+...|..
T Consensus 95 ~Wr~~A~evle~~~d~-~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 SWRRYADEVLESGADP-DA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHHHhcCCCh-HH---HHHHHHHHHhccccchhh
Confidence 333 344455554443 22 344555555444444443
No 348
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.51 E-value=1.3e+02 Score=29.64 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=58.6
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
|.+++.. ..+.|++..|.+.|..-.. |..|+-.+...|+-+....+-..-.+.|.
T Consensus 669 w~~Lg~~------------al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~---- 723 (794)
T KOG0276|consen 669 WRQLGDA------------ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK---- 723 (794)
T ss_pred HHHHHHH------------HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc----
Confidence 7777777 8899999999998876543 67788888888888765555555555543
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
.|...-+|...|+++++++++.+-
T Consensus 724 ---~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ---NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence 244455677889999999988764
No 349
>PRK14135 recX recombination regulator RecX; Provisional
Probab=45.36 E-value=2e+02 Score=24.75 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
.+.+..+++.+.+.|+-=|...--..+..+.+.+.. .-.++-.+|.+.|+.+ + .-...|..+...+.++.|..+.+
T Consensus 88 ~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~~-g~~~I~~kL~~kGi~~-~--~Ie~~l~~l~~~~~~d~a~~~~~ 163 (263)
T PRK14135 88 EEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGDK-GPRVIKQKLLQKGIED-E--IIEEALSEYTEEDQIEVAQKLAE 163 (263)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHcCCCH-H--HHHHHHHhCChhhHHHHHHHHHH
Confidence 344445556666666544433333333344333321 2245667777776643 2 23455555544455666655554
Q ss_pred HHHH-CCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHh
Q 023326 220 DMEE-LGVRPDEDTVRRIASAFQRVG-QDDKQKLVLKKY 256 (284)
Q Consensus 220 ~M~~-~g~~Pd~~ty~~ll~a~~~~G-~~d~a~~l~~~m 256 (284)
.... ..-.++.....-+...+.+.| ..+...++++++
T Consensus 164 k~~~~~~~~~~~~~k~Ki~~~L~rkGf~~~~I~~~l~~~ 202 (263)
T PRK14135 164 KLLKKYQKLPFKALKQKIIQSLLTKGFSYEVIKAALEEL 202 (263)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHc
Confidence 4322 222233334455667777777 455566666655
No 350
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.26 E-value=1.9e+02 Score=24.48 Aligned_cols=104 Identities=6% Similarity=-0.033 Sum_probs=61.9
Q ss_pred HHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILR--KRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~--~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.|...|.++- ..+++++|++++-+ -.+.|+... -++.++...|+.+.|..++....-. ..+...-+.++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHH
Confidence 4445555543 35778888877722 233333322 4777888889999999998865322 113333344445
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
. ..+|.+.+|+..-+...+..- ...+..++..|.
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~ 183 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDELR---RRLFEQLLEHCL 183 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhhh---HHHHHHHHHHHH
Confidence 5 666899999987776544211 335566666555
No 351
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.10 E-value=67 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
-.|.++++++++.|...+..|.--.|+.+...|.
T Consensus 17 ~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 17 LTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3344444444444444444444444444444443
No 352
>PLN03025 replication factor C subunit; Provisional
Probab=44.30 E-value=2.3e+02 Score=25.15 Aligned_cols=92 Identities=5% Similarity=-0.026 Sum_probs=58.6
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------CCCHHHHHHHHHHHHhC
Q 023326 141 LRVIQVAKWM-LSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-----------SISKRLFSRMISLYDHH 208 (284)
Q Consensus 141 ~~A~~l~~~M-~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-----------~~~~~tyn~lI~~~~~~ 208 (284)
++....+.+. .+.|+.-+......++..+ .|++..+...++........ .+....-..++... ..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~ 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LK 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-Hc
Confidence 4445555544 3568877777777777653 58888888887754321111 00122234445444 46
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
+++++|+..+.+|...|+.|..+....
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l 264 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTL 264 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 899999999999999999987664443
No 353
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=44.22 E-value=1.2e+02 Score=22.04 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=53.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
.+|.-|...|++++|.+.+.++....+.+. +.+ .+|..+...+ .-+..-.++..+.+.+... =+.+..|+.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~~~~~-vv~-~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~-----~~~~~~~f~ 79 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPEQHHE-VVK-VLLTCALEEKRTYREMYSVLLSRLCQANVIS-----TKQFEKGFW 79 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCcchHH-HHH-HHHHHHHcCCccHHHHHHHHHHHHHHcCCcC-----HHHHHHHHH
Confidence 456668899999999999998865433222 233 3344343332 3344556677777665442 233334433
Q ss_pred hCCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGV-RPDEDTVRRIASAF 240 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~-~Pd~~ty~~ll~a~ 240 (284)
+ +++.|.+..+ .|+...+-+-+-|.
T Consensus 80 ~---------~~~~l~dl~~D~P~a~~~la~~~a~ 105 (113)
T smart00544 80 R---------LLEDIEDLELDIPNAWRNLAEFVAR 105 (113)
T ss_pred H---------HHhhChhhhcccccHHHHHHHHHHH
Confidence 3 4444444443 56666655544443
No 354
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.22 E-value=1.7e+02 Score=23.53 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH-HHHHHHHHHhCCChhHH
Q 023326 148 KWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL-FSRMISLYDHHDMPNKI 214 (284)
Q Consensus 148 ~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t-yn~lI~~~~~~G~~~~A 214 (284)
+.+++.|++.+..-. .++..+...++.-.|.+|++.|.+.+... +..| |++ |..+...|-+.+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~i-s~aTVYRt-L~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQA-KPPTVYRA-LDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCC-CcchHHHH-HHHHHHCCCEEEE
Confidence 335566777766543 45555555555557788888888776543 4333 443 4566666665443
No 355
>PRK11906 transcriptional regulator; Provisional
Probab=44.22 E-value=2.9e+02 Score=26.26 Aligned_cols=111 Identities=5% Similarity=-0.026 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
...+|.++-+.-.+.+ .-|......+=.+..-.++++.|..+|++-... .|....+|-..--....+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666666665554 225555555555566677799999999988775 3545556665556667789999999999
Q ss_pred HH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 219 AD-MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 219 ~~-M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
++ ++-.-.+.-.......|+.|+..+. |.+.+++
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 430 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPL-KNNIKLY 430 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCch-hhhHHHH
Confidence 98 4433345555666777778888875 5566655
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.45 E-value=1.4e+02 Score=22.41 Aligned_cols=79 Identities=10% Similarity=0.069 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||-.+.+++...+.. ..++--+-+..+-..|++++|..+ - .....| |...|-+|-. .+.|..+++..-+
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~--~--~~~~~p-dL~p~~AL~a--~klGL~~~~e~~l 92 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLL--P--QCHCYP-DLEPWAALCA--WKLGLASALESRL 92 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHH--H--TTS--G-GGHHHHHHHH--HHCT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHh--c--ccCCCc-cHHHHHHHHH--HhhccHHHHHHHH
Confidence 478999999999988652 233334455567788999998211 1 111233 7777776644 5789999998888
Q ss_pred HHHHHCC
Q 023326 219 ADMEELG 225 (284)
Q Consensus 219 ~~M~~~g 225 (284)
.++...|
T Consensus 93 ~rla~~g 99 (116)
T PF09477_consen 93 TRLASSG 99 (116)
T ss_dssp HHHCT-S
T ss_pred HHHHhCC
Confidence 8887665
No 357
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.30 E-value=19 Score=33.71 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcC-CH
Q 023326 172 DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT----VRRIASAFQRVG-QD 246 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t----y~~ll~a~~~~G-~~ 246 (284)
...+++|.++-++-...|- | ...|-+-.|-+++.++.+.|+.||..| ..-.+++|+=.| .+
T Consensus 216 a~~ldeAl~~a~~~~~ag~-p-------------~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ 281 (561)
T COG2987 216 AETLDEALALAEEATAAGE-P-------------ISIGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTV 281 (561)
T ss_pred cCCHHHHHHHHHHHHhcCC-c-------------eEEEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCH
Confidence 3456666666665555442 2 123455567788888888888888775 445666666665 34
Q ss_pred HHHHHHH
Q 023326 247 DKQKLVL 253 (284)
Q Consensus 247 d~a~~l~ 253 (284)
|++.++.
T Consensus 282 ee~~~lr 288 (561)
T COG2987 282 EEADELR 288 (561)
T ss_pred HHHHHHH
Confidence 5554444
No 358
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.52 E-value=3.5e+02 Score=26.82 Aligned_cols=88 Identities=11% Similarity=0.095 Sum_probs=57.9
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------------CHHHHHHHHHHHHh
Q 023326 141 LRVIQVAKW-MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI------------SKRLFSRMISLYDH 207 (284)
Q Consensus 141 ~~A~~l~~~-M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~------------~~~tyn~lI~~~~~ 207 (284)
++..+.+.+ +.+.|+..+......|+. ...|++..+..+++++...+.... +......|+.+...
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 344444433 445688777777666665 345899999998887765442211 23334455565555
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
|+...+++++++|.+.|..|..+
T Consensus 264 -~d~~~al~~l~~l~~~G~~~~~i 286 (618)
T PRK14951 264 -GDGRTVVETADELRLNGLSAAST 286 (618)
T ss_pred -CCHHHHHHHHHHHHHcCCCHHHH
Confidence 89999999999999998876544
No 359
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=41.91 E-value=25 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=15.4
Q ss_pred CCChhHHHHHHHHHHHCC-CCCC
Q 023326 208 HDMPNKIIEVFADMEELG-VRPD 229 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g-~~Pd 229 (284)
.=|++.|+..|.+++..| +.|+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~e 60 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPE 60 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChh
Confidence 447888888888888776 4344
No 360
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=41.82 E-value=1.7e+02 Score=22.98 Aligned_cols=68 Identities=13% Similarity=0.052 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQT 190 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~ 190 (284)
....||.--.+|.-.|+.++|++=+++-.+. |-+-- ...|.---..|-..|+-+.|..=|+.-.+.|.
T Consensus 76 raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 76 RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 4455555555566666666666555554432 21100 11222222223445555555555555555543
No 361
>COG5210 GTPase-activating protein [General function prediction only]
Probab=41.64 E-value=2.8e+02 Score=26.53 Aligned_cols=44 Identities=16% Similarity=0.292 Sum_probs=21.4
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 146 VAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 146 l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
++..|...|+....+++.-++..+.+.-.++.+.++|+.+.-.|
T Consensus 364 l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg 407 (496)
T COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEG 407 (496)
T ss_pred HHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 33444444444445555555555555555555555554444333
No 362
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=41.50 E-value=2.1e+02 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSK 153 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~ 153 (284)
..+.+|..+...|+|+.|.+.|.-+...
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 3445666688888888888888887764
No 363
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.50 E-value=1.3e+02 Score=21.52 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 142 ~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
++-++++.+.+.|+- +..-...+-.+=...|+.+.|.++++.+. .|- ++ |...++++-..|+.+-|.+
T Consensus 20 ~~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~---~a--F~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 20 KTRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKE---GW--FSKFLQALRETEHHELARE 87 (88)
T ss_pred hHHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC---cH--HHHHHHHHHHcCchhhhhc
Confidence 355666777777632 22223333333335577888888888777 432 32 6788888877777665543
No 364
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.13 E-value=1.4e+02 Score=26.44 Aligned_cols=154 Identities=12% Similarity=0.200 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC--CHHHHHHHHHHHHhcCCHHH
Q 023326 103 NEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLS---KGQGA--TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 103 ~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~---~g~~p--~~~ty~~Ll~~~~~~g~~~~ 177 (284)
++|...|...-++.....+...-+...+|+.+.+.|++++-+.-|.+|+. ..+.. ..-+.|++++-.+.+.+.+.
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~L 123 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDL 123 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHH
Confidence 34444444443322222222333555677779999999999999999863 22322 35678899998888888877
Q ss_pred HHHHHHHHHHcCCCCCCHHHH----HHHHHHHHhCCChhHHHHHHHHHHHC------------CCCCCHHHHHHHHHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLF----SRMISLYDHHDMPNKIIEVFADMEEL------------GVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~ty----n~lI~~~~~~G~~~~A~~l~~~M~~~------------g~~Pd~~ty~~ll~a~~ 241 (284)
-.++++.-.+.--...+...| +-|-..|...|++.+..++++++... |-+ -...|..=|-.|-
T Consensus 124 LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQ-LLEiYAlEIQmYT 202 (440)
T KOG1464|consen 124 LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQ-LLEIYALEIQMYT 202 (440)
T ss_pred HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccch-hhhhHhhHhhhhh
Confidence 666654433221111122223 45566777778888888888877432 111 1224555555565
Q ss_pred HcCCHHHHHHHHHHhH
Q 023326 242 RVGQDDKQKLVLKKYL 257 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~ 257 (284)
...+-.+-..++++-.
T Consensus 203 ~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 203 EQKNNKKLKALYEQAL 218 (440)
T ss_pred hhcccHHHHHHHHHHH
Confidence 5555555555665443
No 365
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=41.10 E-value=1e+02 Score=25.55 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCH------HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 175 ADEAESLWNMILHTQTRSISK------RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~------~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
++.|..+|+.+.+..-.|.+. ..=-..+..|.+.|.+++|.++++.... .|+..+...-|-...+..
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHHcc
Confidence 567888888776653332111 1123445678888888888888888765 577777766666665544
No 366
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.37 E-value=81 Score=21.09 Aligned_cols=50 Identities=8% Similarity=0.090 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD 172 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~ 172 (284)
|...-++.+++.+++..-+++++..+++..+.|. -+..+|.--+..+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777777775 3556666666666654
No 367
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=40.28 E-value=63 Score=24.05 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=33.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
..++......+..-.|.++++.|.+.|...+..|.---|+.+...|.+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 355666666666777888888888888888888777777777776654
No 368
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.63 E-value=1.7e+02 Score=25.81 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSR 200 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~ 200 (284)
..-...|..+...|++..|+++..+..+.--.-.. |+. +..+ ..++++-....+++++.. +...|...|..
T Consensus 128 ~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~--~~c-~~~L--~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~ 202 (291)
T PF10475_consen 128 QQTQSRLQELLEEGDYPGALDLIEECQQLLEELKG--YSC-VRHL--SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSK 202 (291)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhccc--chH-HHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 33446677788899999999999887653100000 110 0000 112333333333332221 22357888999
Q ss_pred HHHHHHhCCChhHHHH
Q 023326 201 MISLYDHHDMPNKIIE 216 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~ 216 (284)
++.||.-.|+.+.+.+
T Consensus 203 v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 203 VQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHhhhHHHHH
Confidence 9999999998776664
No 369
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=39.34 E-value=43 Score=31.32 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=28.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHH----HHHHHHHHHHhCCChhHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKR----LFSRMISLYDHHDMPNKIIEV 217 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~----tyn~lI~~~~~~G~~~~A~~l 217 (284)
+|+.|+.+.+..+|+.-++.|-. |.. +|.-|=.+|...+++++|++.
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 56666666666666666666654 332 255555666666666666664
No 370
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=39.06 E-value=2.9e+02 Score=24.80 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC------CCH---------HHHHHHHHHHHhCCChhHHHHHH
Q 023326 155 QGATMGTYDTLLLAFDKD-HRADEAESLWNMILHTQTRS------ISK---------RLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 155 ~~p~~~ty~~Ll~~~~~~-g~~~~A~~l~~~m~~~~~~~------~~~---------~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
.+-|+.-|-..+...-.- --++++.++...-...+... .|. .+++..-..|..+|.+.+|.++-
T Consensus 223 ~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 223 PKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred ccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 445677777777666443 35677777776665444431 011 12356668899999999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 219 ADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+...... ..+...+-.|+..+...|+--.+.+-++.|.
T Consensus 303 qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 303 QRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 8765442 3377788899999999999777777777665
No 371
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.69 E-value=3.2e+02 Score=25.17 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=41.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHHc
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMG--TYDTLLLAFDK--DHRADEAESLWNMILHT 188 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~--ty~~Ll~~~~~--~g~~~~A~~l~~~m~~~ 188 (284)
+.+.+++..|.++|+++.+. +.++.. .|..|..||.. .-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 55889999999999999987 666555 55566666654 56788899998877654
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.58 E-value=2.3e+02 Score=23.46 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=86.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH--HHhcCCH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLA--FDKDHRA 175 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~--~~~~g~~ 175 (284)
.+..++|...|..+..- ..+. ..+..--.+-....+.|+...|..-|++.-...-.|-.. -..-|=.+ +...|.+
T Consensus 71 ~~k~d~Alaaf~~lekt-g~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 71 ENKTDDALAAFTDLEKT-GYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred cCCchHHHHHHHHHHhc-CCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 56677788888877651 1111 122333344455788999999999999998876666554 22223333 4567889
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
++.....+-+...+. |.-...--.|--+--+.|++.+|.+.|..+...--.|--+
T Consensus 149 ~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 149 DDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 888888877765443 3334444566666778999999999999988765566443
No 373
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.43 E-value=3.1e+02 Score=24.97 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HHcCCCCCCHHHHHHHHHH-HHhCCChhHHHHHHHHHHHCCCCCCH----H
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMI----LHTQTRSISKRLFSRMISL-YDHHDMPNKIIEVFADMEELGVRPDE----D 231 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m----~~~~~~~~~~~tyn~lI~~-~~~~G~~~~A~~l~~~M~~~g~~Pd~----~ 231 (284)
.+-..-.-||+-|+.+.|++.+... +..|.+- |++.+.+=+.- |..+.-+.+-++..+.|.+.|.--+- .
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~ki-DVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKI-DVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccch-hhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 3444445577777777777665544 4445553 66544433332 22333445556666666666643332 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 232 TVRRIASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 232 ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
+|..+- |....++.+|-.+|-+...-+..
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccc
Confidence 455443 23445667777766665554443
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=38.30 E-value=1.3e+02 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
-|..|+.-|-..|..++|.+++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999987
No 375
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=37.44 E-value=1.6e+02 Score=21.36 Aligned_cols=63 Identities=11% Similarity=-0.043 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD--HRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~--g~~~~A~~l~~~m~~~~~~~ 192 (284)
..+|..|...|+.++|...+.++...... ..+.+ .+|..+... ..-+..-.++..+.+.+..+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~~-~~vv~-~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~ 70 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQH-HEVVK-VILECALEEKKSYREYYSKLLSHLCKRKLIS 70 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGGH-HHHHH-HHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCccH-HHHHH-HHHHHHhhccHHHHHHHHHHHHHHHhcCCCC
Confidence 34566688889999999999886443221 22333 333333333 23334567777777776653
No 376
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=37.03 E-value=2.8e+02 Score=24.07 Aligned_cols=152 Identities=9% Similarity=0.020 Sum_probs=85.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH-------HcC-CHHHHHHHHHHHHHc--------CCCCCH---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILR-------KRG-QWLRVIQVAKWMLSK--------GQGATM--- 159 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~-------~~g-~~~~A~~l~~~M~~~--------g~~p~~--- 159 (284)
.|..+.|+..+...+..... ..|+ .+..+-..|- +.+ ++++|...+++-.+- ...|+.
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~-~~~~--~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNS-LDPD--MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhc-CCcH--HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46667777788777765432 2222 2222222222 245 777776666553221 233443
Q ss_pred --HHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 160 --GTYDTLLLAFDKDHR---ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 160 --~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
.++..|+.+|...+. .++|.++++.+.+.+..+ ..+|-.-|..+-+.++.+.+.+++.+|...-.. ....|.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~ 159 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHH
Confidence 566677777777665 445666777776665543 333555566666688888999998888876321 233444
Q ss_pred HHHHHH---HHcCCHHHHHHHHHHhH
Q 023326 235 RIASAF---QRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 235 ~ll~a~---~~~G~~d~a~~l~~~m~ 257 (284)
.++..+ ..... ..+...++++.
T Consensus 160 ~~l~~i~~l~~~~~-~~a~~~ld~~l 184 (278)
T PF08631_consen 160 SILHHIKQLAEKSP-ELAAFCLDYLL 184 (278)
T ss_pred HHHHHHHHHHhhCc-HHHHHHHHHHH
Confidence 444444 44444 34555555554
No 377
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=36.89 E-value=1.6e+02 Score=21.15 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEE-LGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~-~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
..-..+-.-|-+.|..|.+.+++.+-++ .|-. .|...|+.|+..++.-..|+.+++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHhc
Confidence 3356666677888899999998887655 5544 788889999988888887877763
No 378
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.86 E-value=4.1e+02 Score=25.87 Aligned_cols=96 Identities=11% Similarity=0.005 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---C---HHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI---S---KRLFSRM 201 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~---~---~~tyn~l 201 (284)
-++.-|.+.+++++|+.++..|.=.-... .-.+.+.+++.+-+..--.+.+..++.....-..|. . +.-|--=
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d~ 492 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRDP 492 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHHH
Confidence 45556999999999999999885221111 124556667777777655666666666665544321 1 1123333
Q ss_pred HHHH--------HhCCChhHHHHHHHHHHHC
Q 023326 202 ISLY--------DHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 202 I~~~--------~~~G~~~~A~~l~~~M~~~ 224 (284)
|..| .|.+++++|+.+--++...
T Consensus 493 V~~~aRRfFhhLLR~~rfekAFlLAvdi~~~ 523 (545)
T PF11768_consen 493 VSDLARRFFHHLLRYQRFEKAFLLAVDIGDR 523 (545)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHhccch
Confidence 3333 3568888888777766533
No 379
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.77 E-value=2.1e+02 Score=28.73 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCh
Q 023326 164 TLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 164 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~ 211 (284)
+|+.+|..+|++..+.++++.+....-- -.=...||..|..+.+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 5666666666666666666666543221 00122356666666666654
No 380
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.49 E-value=67 Score=22.71 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=23.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGA 157 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p 157 (284)
.++..+.++.-.++|+++++.|.++| +.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrGEi~~ 65 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRGEITP 65 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCCCCH
Confidence 45556888888999999999999998 443
No 381
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=36.47 E-value=48 Score=24.27 Aligned_cols=62 Identities=6% Similarity=0.054 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--CChhHHHHHHHHHHHCCCC
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH--DMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~--G~~~~A~~l~~~M~~~g~~ 227 (284)
..+|..|-..|+.++|..-+.++.-... -...-..+|...... ..-+.+..++..+...|..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~---~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ---HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG---HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 4456667777888888887777633211 112233344433333 2334555666777666644
No 382
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.20 E-value=4.2e+02 Score=25.84 Aligned_cols=86 Identities=14% Similarity=0.133 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------------HHHhcCCHHHHHHHHHHHHHc
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL-------------AFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~-------------~~~~~g~~~~A~~l~~~m~~~ 188 (284)
-++..|-.+|.-|...++|++|+++-+...+. ..|.+|-. +|+..++.|+ ..+.+++...
T Consensus 571 isV~py~~iL~e~~sssKWeqavRLCrfv~eq------TMWAtlAa~Av~~~~m~~~EiAYaA~~~idK-Vsyin~iK~l 643 (737)
T KOG1524|consen 571 ISVNPYPEILHEYLSSSKWEQAVRLCRFVQEQ------TMWATLAAVAVRKHQMQISEIAYAAALQIDK-VSYINHIKAL 643 (737)
T ss_pred eeccccHHHHHHHhccchHHHHHHHHHhccch------HHHHHHHHHHHhhccccHHHHHHHHhhchhh-HHHHHHHhcc
Confidence 35667778899999999999999998765543 33333332 3444445544 3344555443
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
- +..+- |-.-..-.|++.+|.-++..
T Consensus 644 t----ske~~--mA~~~l~~G~~~eAe~iLl~ 669 (737)
T KOG1524|consen 644 T----SKEEQ--MAENSLMLGRMLEAETILLH 669 (737)
T ss_pred C----cHHHH--HHHHHHHhccchhhhHHHHh
Confidence 2 32222 22223345777788777654
No 383
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.32 E-value=1.2e+02 Score=28.77 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcC-CHHHHHHH
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMG----TYDTLLLAFDKDH-RADEAESL 181 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~----ty~~Ll~~~~~~g-~~~~A~~l 181 (284)
|-..-|.+++.++.+.|+.||.+ +.+-.+++|+-.| .++++.++
T Consensus 239 gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ee~~~l 287 (561)
T COG2987 239 GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTVEEADEL 287 (561)
T ss_pred EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCHHHHHHH
Confidence 34567889999999999999864 4667777777766 45555554
No 384
>PRK10292 hypothetical protein; Provisional
Probab=34.90 E-value=1.4e+02 Score=19.97 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 219 ADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
-+|.+.|..|+.+....+|..-...+..+.-......|.
T Consensus 23 l~m~~lG~e~k~i~Ia~vlrTa~a~~r~~rs~~~~qaMe 61 (69)
T PRK10292 23 LEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAME 61 (69)
T ss_pred HHHHHcCCCcchhhHHHHHHHHHHhcccccCHHHHHHHH
Confidence 357889999999999888865555555444444444443
No 385
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=34.40 E-value=5.1e+02 Score=26.29 Aligned_cols=102 Identities=19% Similarity=0.143 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C-C--CC------------
Q 023326 141 LRVIQVAKWMLS--------KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT---R-S--IS------------ 194 (284)
Q Consensus 141 ~~A~~l~~~M~~--------~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---~-~--~~------------ 194 (284)
++...+++...+ .++.-+......|+... .|++.++..+++.+..... . . .+
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Confidence 455556655543 23444555555555433 6788888877776543210 0 0 00
Q ss_pred -------HHHHHHHHHHH---HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 195 -------KRLFSRMISLY---DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 195 -------~~tyn~lI~~~---~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
...| -+|+++ ++.+|++.|+..+.+|.+.|.-|..+.=..++.+.-..|.
T Consensus 249 ~~ydk~gd~hy-d~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 249 VLYDKEGDAHF-DTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred hhcccCCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 0112 234433 3468999999999999999988887777777777766665
No 386
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=34.27 E-value=3.6e+02 Score=27.82 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------CCHHHHHHHHHHH
Q 023326 141 LRVIQVAKWM-LSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS--------------ISKRLFSRMISLY 205 (284)
Q Consensus 141 ~~A~~l~~~M-~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~--------------~~~~tyn~lI~~~ 205 (284)
++..+.+.++ .+.|+..+...+..|+... .|++..+..++++++.. ... .+......+|++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidAL 258 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDAL 258 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4444455444 3457777777666665544 47888888888887742 111 0122233455555
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCC
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
. .|+...++.++++|.+.|..|.
T Consensus 259 ~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 259 A-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred H-cCCHHHHHHHHHHHHHcCCCHH
Confidence 5 5889999999999998887654
No 387
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.02 E-value=4.4e+02 Score=25.39 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=56.7
Q ss_pred HHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CCHHHHHHHHHHHHh
Q 023326 140 WLRVIQVAKW-MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS-----------ISKRLFSRMISLYDH 207 (284)
Q Consensus 140 ~~~A~~l~~~-M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-----------~~~~tyn~lI~~~~~ 207 (284)
.++....+.. +.+.|+..+......++... .|++..+..+++.+...+..- +.....-.|+++. .
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 3444555544 34568777766666665443 488888888888776543221 0112234455655 5
Q ss_pred CCChhHHHHHHHHHHHCCCCCCHH
Q 023326 208 HDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
.++.++|+.++++|...|..|..+
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~~~I 277 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAARTL 277 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHH
Confidence 599999999999999999766533
No 388
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.96 E-value=68 Score=24.19 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKG 154 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g 154 (284)
+|..+.++.-.++|+++.+.|.+.|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4455788889999999999999998
No 389
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.93 E-value=76 Score=22.42 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=15.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
++|.-+.++.-.++|+++++-|...|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45555555556666666666655554
No 390
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=33.70 E-value=1.2e+02 Score=20.95 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
+.+.|..++..+.+...+ +...||++..-+.++
T Consensus 12 DtEmA~~mL~DLr~dekR--sPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKR--SPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchhhc--ChHHHHHHHHHHHHc
Confidence 445566666666554333 455677777666665
No 391
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.51 E-value=3.6e+02 Score=24.33 Aligned_cols=58 Identities=12% Similarity=0.250 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 144 IQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 144 ~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
.++++.|.+.++.|.-+.|-=+.-.+.+.=.+.+...+|+.+.....+ |..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r------fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR------FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh------hHHHHHHHHH
Confidence 467777777788887766665555577777777778888887654332 7777777776
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=33.50 E-value=2.3e+02 Score=22.02 Aligned_cols=59 Identities=10% Similarity=0.063 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 142 ~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
|..+-++.+..-.+.|+.-.--.-|.+|-+.+++..|.++|+.++.+- -+ -...|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~-g~-~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC-GA-QKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc-cc-HHHHHHHHH
Confidence 555556666677889999999999999999999999999999887652 22 233455554
No 393
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.37 E-value=1e+02 Score=20.65 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
++.|+..++.---+++++..+.+....|. .+..+|.--++.+++
T Consensus 11 ~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 11 SNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 56666666666666666666666666554 244445444444444
No 394
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=33.17 E-value=5.6e+02 Score=26.38 Aligned_cols=87 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------CCCHHHHHHHHHHHH
Q 023326 140 WLRVIQVAKWML-SKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR------------SISKRLFSRMISLYD 206 (284)
Q Consensus 140 ~~~A~~l~~~M~-~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~------------~~~~~tyn~lI~~~~ 206 (284)
.++..+.+++.. ++|+.-+......|... ..|++..|..++++....+.. -.+...+..++..+
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL- 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL- 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-
Confidence 445555665544 45666666555554433 368888888887776543311 01333345555544
Q ss_pred hCCChhHHHHHHHHHHHCCCCCC
Q 023326 207 HHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
..|+++++++++++|...|+.+.
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCHH
Confidence 44899999999999988887654
No 395
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=32.44 E-value=1.4e+02 Score=30.06 Aligned_cols=114 Identities=17% Similarity=0.187 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc--CCHHHH-HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 137 RGQWLRVIQVAKWMLSKGQ----GATMGTYDTLLLAFDKD--HRADEA-ESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~----~p~~~ty~~Ll~~~~~~--g~~~~A-~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
-|++++|.++|-+|-++.+ .....-|-.++..+-.- ++-|+. +.-|+.|-+.. . +...|-.....|.+.|
T Consensus 747 ~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~f--a-~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETF--A-EMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHhcc
Confidence 4788888888888766532 22233344444443221 122222 22234333221 1 4455777788888888
Q ss_pred ChhHHHHHHHHHHHCC------C-CC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 210 MPNKIIEVFADMEELG------V-RP-DEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g------~-~P-d~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
+.+.-.+.+...+..| . -| |.--.--+-.++...|.-|+|.+.|
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 8876665554433322 1 13 3344555667777778777777655
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=32.40 E-value=4.9e+02 Score=25.53 Aligned_cols=129 Identities=12% Similarity=0.074 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSK----GQGATMGTYDTL-LLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRM 201 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p~~~ty~~L-l~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~l 201 (284)
.++..|.+.+... |+...++..+. +..+=...|.-| +..+...++...|.+.++.+...-.... ...++-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 5566677777655 99999887653 222333444444 3333334799999999988876543222 34444555
Q ss_pred HHHHH--hCCChhHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhHH
Q 023326 202 ISLYD--HHDMPNKIIEVFADMEELGV---------RPDEDTVRRIASAFQ--RVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 202 I~~~~--~~G~~~~A~~l~~~M~~~g~---------~Pd~~ty~~ll~a~~--~~G~~d~a~~l~~~m~~ 258 (284)
+.+.. +.+..+++++.++++..... .|-...|..++.-++ ..|+++.+...+.+++.
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54444 44667888888888754332 346668888887665 67887777777766653
No 397
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.27 E-value=81 Score=16.45 Aligned_cols=28 Identities=14% Similarity=0.205 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 173 HRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
|+.+.|..+|+.++... |.+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHH
Confidence 34556666666666542 22444555444
No 398
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=4.1e+02 Score=24.44 Aligned_cols=137 Identities=11% Similarity=0.016 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSK-GQGATMGTYDTLLLAF--DKDHRADEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~--~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
|..+....=.+|.-+|+.+.-...++...-. +-..-.++|.-=|.+| -..|-+++|++.-++-.+.+ +.|...-.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN--~~D~Wa~H 213 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN--RFDCWASH 213 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC--CcchHHHH
Confidence 5666677777788888888888877776643 2111123444444444 35688888888877766543 34555556
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HhHHhcC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL---GVRPDEDTVRRIASAFQRVGQDDKQKLVLK-KYLSKWK 261 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~---g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~-~m~~~~~ 261 (284)
+.-..+-..|++.++.+...+-+.. |...-...|.-..-.+...+.++.|.++|+ +|.++..
T Consensus 214 a~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~k~l~ 279 (491)
T KOG2610|consen 214 AKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIWKRLE 279 (491)
T ss_pred HHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHHHHhh
Confidence 6667777788888888776664432 222223344444445556688889999887 4444433
No 399
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.71 E-value=4.1e+02 Score=24.41 Aligned_cols=85 Identities=9% Similarity=0.017 Sum_probs=42.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhCCChh
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~~~~~G~~~ 212 (284)
...|-+++|.+.-++-.+-+ +-|.-.-+++-+.+-..|++.++.++..+=.+.--... ...-|-..--.|...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 34566777766655544332 22445556666666667777777766554322211100 0011222222233446777
Q ss_pred HHHHHHHH
Q 023326 213 KIIEVFAD 220 (284)
Q Consensus 213 ~A~~l~~~ 220 (284)
.|+++|+.
T Consensus 265 ~aleIyD~ 272 (491)
T KOG2610|consen 265 KALEIYDR 272 (491)
T ss_pred HHHHHHHH
Confidence 77777764
No 400
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=31.68 E-value=2.2e+02 Score=21.20 Aligned_cols=78 Identities=10% Similarity=0.082 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.-++|..|-+-+...+.. ...+--+=++.+...|++++|..+.+.+ ..||...|-+|-. .+.|..+....-+
T Consensus 20 cHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 456777777777665432 2333334456677889999999987776 5899999887754 3677777666666
Q ss_pred HHhHHh
Q 023326 254 KKYLSK 259 (284)
Q Consensus 254 ~~m~~~ 259 (284)
.+|...
T Consensus 92 ~rla~s 97 (115)
T TIGR02508 92 NRLAAS 97 (115)
T ss_pred HHHHhC
Confidence 556543
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.49 E-value=1.9e+02 Score=27.84 Aligned_cols=56 Identities=21% Similarity=0.091 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR 191 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~ 191 (284)
...|.++++++.+...... +.-..-+.-.++...-+.|++++|..+-+.|....+.
T Consensus 334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie 389 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE 389 (831)
T ss_pred HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC
Confidence 3445555555554433211 1122334445555555555555555555555544443
No 402
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.25 E-value=80 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=13.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
++|.-.-++.-.++|+++++-|...|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 34455555555555555555555554
No 403
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.23 E-value=3.9e+02 Score=23.99 Aligned_cols=97 Identities=6% Similarity=0.013 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLS----KGQGATMGTYDTLLLA-FDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~----~g~~p~~~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
....+-+-|++.++.+.+.+..++..+ .|.+.|+...-+-+.. |+...-+++-.+..+.|++.|+.=.-..-|-+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~ 196 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKV 196 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHH
Confidence 333445559999999999998877554 3777777544433322 34444577788889999999986111111333
Q ss_pred HHHHHHh-CCChhHHHHHHHHHH
Q 023326 201 MISLYDH-HDMPNKIIEVFADME 222 (284)
Q Consensus 201 lI~~~~~-~G~~~~A~~l~~~M~ 222 (284)
.=..|+- ..++.+|-.+|-+..
T Consensus 197 Y~Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 197 YKGIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHh
Confidence 3333332 246777777777654
No 404
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.13 E-value=1.2e+02 Score=22.24 Aligned_cols=47 Identities=15% Similarity=0.178 Sum_probs=28.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~ 176 (284)
+++.+...+..-.|.++++.+.+.+...+..|-=-.|+.+.+.|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 44555555555667777777777766556555555556666666543
No 405
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.09 E-value=1.2e+02 Score=25.81 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=50.6
Q ss_pred cCCCCH-HHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 119 ETEFPL-IAAA-KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 119 ~~~p~~-~~y~-~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
...|++ .++. .+|.++...|+.+.|+.+++.+.-..-.+ ..-..++.. ..++.+.+|..+-....+.. -..
T Consensus 101 L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~~~~~----~~~ 173 (226)
T PF13934_consen 101 LSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSYPDEL----RRR 173 (226)
T ss_pred hCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhCchhh----hHH
Confidence 344544 2333 78888999999999999998865433333 222333333 55689999988776554421 123
Q ss_pred HHHHHHHHHHhC
Q 023326 197 LFSRMISLYDHH 208 (284)
Q Consensus 197 tyn~lI~~~~~~ 208 (284)
.|..++..+...
T Consensus 174 l~e~l~~~~~~~ 185 (226)
T PF13934_consen 174 LFEQLLEHCLEE 185 (226)
T ss_pred HHHHHHHHHHHH
Confidence 456666555533
No 406
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=30.93 E-value=88 Score=21.21 Aligned_cols=40 Identities=20% Similarity=0.164 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 023326 141 LRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLW 182 (284)
Q Consensus 141 ~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~ 182 (284)
+.+.+++..-... .....|...|+.++-+.|+-+-|..+-
T Consensus 41 ~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i~ 80 (83)
T PF00531_consen 41 EQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKIE 80 (83)
T ss_dssp HHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 4555555544433 122335556666666666666555543
No 407
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.77 E-value=2.4e+02 Score=21.38 Aligned_cols=59 Identities=5% Similarity=0.164 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~ 220 (284)
.-|--+=-.|++.-+ .+.++|..|.+.|+--.-...|..--..+-..|++++|.++|+.
T Consensus 66 ~RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 66 ERYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334444444444333 88888888888777544566688888888888888888888864
No 408
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.75 E-value=3.6e+02 Score=23.48 Aligned_cols=48 Identities=13% Similarity=0.029 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 120 TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 120 ~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
..|.+.....+|..|. .+++++|.++|+++-+.|+.|.-.. ++++..+
T Consensus 235 d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 235 DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 4577777777777655 4579999999999999999986543 5666665
No 409
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.69 E-value=4.9e+02 Score=27.02 Aligned_cols=110 Identities=7% Similarity=0.042 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCCH--HHHHH---------------HHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG-----QGATMGTYDTLLLAFDKDHRA--DEAES---------------LWN 183 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-----~~p~~~ty~~Ll~~~~~~g~~--~~A~~---------------l~~ 183 (284)
-|..++..|...|+.++|++++.+....- ..++. +--++.-+-+.+.- +-.++ +|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~--~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG--LEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh--HHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeee
Confidence 46678888999999999999999987632 11121 11244444443332 33332 333
Q ss_pred H-H-HHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 184 M-I-LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 184 ~-m-~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
. . .+.+..+.+ -+-.|+.....+-++..++.+...--.++..-.+.++.-|+..
T Consensus 584 ~~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 584 SEDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred ccChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 2 0 011222212 2345667777888888999888777778888888888887643
No 410
>PRK05414 urocanate hydratase; Provisional
Probab=30.41 E-value=38 Score=32.31 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcC-CHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT----VRRIASAFQRVG-QDDK 248 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t----y~~ll~a~~~~G-~~d~ 248 (284)
++++|.++.++-.+.+ +| ...|-+-.|.++|.++.+.|+.||..| ....+.+|+=.| .+++
T Consensus 218 ~Ldeal~~~~~a~~~~-~~-------------~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ee 283 (556)
T PRK05414 218 DLDEALALAEEAKAAG-EP-------------LSIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLEE 283 (556)
T ss_pred CHHHHHHHHHHHHHcC-Cc-------------eEEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHHH
Confidence 5566666665555543 22 223445556777777777777777664 333344666665 4555
Q ss_pred HHHHHHH
Q 023326 249 QKLVLKK 255 (284)
Q Consensus 249 a~~l~~~ 255 (284)
+.++..+
T Consensus 284 ~~~lr~~ 290 (556)
T PRK05414 284 AAELRAE 290 (556)
T ss_pred HHHHHHh
Confidence 5554443
No 411
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.08 E-value=39 Score=32.10 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHHcC-CHHHHHHHH
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDT----VRRIASAFQRVG-QDDKQKLVL 253 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~t----y~~ll~a~~~~G-~~d~a~~l~ 253 (284)
|-+-.|.++|.++.+.|+.||..| ....+.+|+=.| .++++.++.
T Consensus 230 g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ee~~~lr 279 (545)
T TIGR01228 230 GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVEDADKLR 279 (545)
T ss_pred EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHHHHHHHH
Confidence 444456666666666666666553 333344455555 444444443
No 412
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=29.94 E-value=2.8e+02 Score=21.85 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.4
Q ss_pred HcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 136 KRGQWLRVIQVAKWMLSKGQG---ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~---p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
...++.+.+.+|+++.+...+ -+..-| |--++.+.++++.+.++.+.+.+..
T Consensus 47 ~~~dv~~GI~iLe~l~~~~~~~~rRe~lyY--LAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 47 DTEDVQEGIVILEDLLKSAHPERRRECLYY--LAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred chHHHHHhHHHHHHHhhhcCcccchhhhhh--hHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 345678888999988863221 122333 3446889999999999999998863
No 413
>KOG3280 consensus Mitochondrial/chloroplast ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=29.83 E-value=1.4e+02 Score=23.94 Aligned_cols=67 Identities=9% Similarity=-0.047 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCCCcccccee-eeecccccc
Q 023326 212 NKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWKYIHFKGERV-RVRRDAWYE 279 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~~~~~g~~~-~~~~~~~~~ 279 (284)
++|-.+.+.|...|++- +..-+......+--.|+ |-..++|+.+..+|+.++.-=.|+ ++++.+|.-
T Consensus 49 ~Ear~~aEklIt~~~k~g~~~~~~~~~a~~~l~ek-dli~KlF~vl~pRY~dr~ggYTRllrlppr~~d~ 117 (171)
T KOG3280|consen 49 KEARRYAEKLITLGKKAGSLHERTARMADGWLREK-DLLHKLFTVLAPRYKDRNGGYTRLLRLPPRRGDR 117 (171)
T ss_pred HHHHHHHHHHHHHHHhcCcHhHHHHHHHhcccccc-hHHHHHHHHhchhhccCCCCceehhccCcccccc
Confidence 45666666666666442 33333333333333333 467889999999888777655555 666666643
No 414
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=29.46 E-value=2.3e+02 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.022 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
.+|...|-+++.+.++..+|..=+-+|.
T Consensus 159 ~iT~e~L~da~~r~N~~rea~~k~~kL~ 186 (379)
T COG1775 159 EITEEKLRDAIARYNRLREALAKLYKLA 186 (379)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555444333343
No 415
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.32 E-value=2.6e+02 Score=21.36 Aligned_cols=43 Identities=16% Similarity=0.174 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 023326 212 NKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++..++|..|...||.-... -|...-.-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44667777777777665443 55566666677777777777764
No 416
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.96 E-value=4.5e+02 Score=24.02 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCH
Q 023326 120 TEFPLIAAA--KALRILRKRGQWLRVIQVAKWMLS-----KGQGATM 159 (284)
Q Consensus 120 ~~p~~~~y~--~~i~~~~~~g~~~~A~~l~~~M~~-----~g~~p~~ 159 (284)
.+|+.+.|- .+...+...|+.+++.+++++.++ .|+.|++
T Consensus 109 ~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~V 155 (380)
T KOG2908|consen 109 KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNV 155 (380)
T ss_pred ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhh
Confidence 444444443 222333345555555555555554 3555544
No 417
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=28.66 E-value=1.7e+02 Score=27.79 Aligned_cols=74 Identities=14% Similarity=0.201 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
..|+.-|--.|++.+|.+...++---... -.+++-++|.+.-+.|+-+..++++++.-..|. +|-+-|-.||.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFh--HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFH--HEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcch--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45666677777777777766665321111 345678888888888887777777777766652 233444444443
No 418
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=27.83 E-value=4e+02 Score=24.76 Aligned_cols=100 Identities=13% Similarity=0.009 Sum_probs=54.6
Q ss_pred HHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH----HHHHhCCChhHHHHH
Q 023326 145 QVAKWMLSKGQGATMG---TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI----SLYDHHDMPNKIIEV 217 (284)
Q Consensus 145 ~l~~~M~~~g~~p~~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI----~~~~~~G~~~~A~~l 217 (284)
.+++.+.+.|+.|+.+ +-.+++.++...+.-++..+++..- .. +...+...- -++...+..+.-...
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~---~~---d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD---GI---DLSAFNRLRGKKSLGYSGYGWLGTLGRR 173 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc---ch---hhhhhhhhccccccccccccccchHHHH
Confidence 4667788899999863 5667787777666666666665531 00 111111100 011122222333444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 218 FADMEELGVRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 218 ~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
++.....|...|...+.-.+..+..---+++|.
T Consensus 174 l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy 206 (391)
T cd07229 174 IQRLLREGYFLDVKVLEEFVRANLGDLTFEEAY 206 (391)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHH
Confidence 455555676777777777776655555555554
No 419
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=27.78 E-value=1.7e+02 Score=26.50 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 161 TYDTLLLAFDKDHRAD---EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~---~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
.-+.|++.+.+.++.. +|..+++...... |.|...=-.+|..|...|-.+.|.+.|..+.-+.++-|+..|..
T Consensus 182 a~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s--~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~ 257 (365)
T PF09797_consen 182 AAHSLLDLYSKTKDSEYLLQAIALLEHALKKS--PHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLI 257 (365)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHH
Confidence 3345566565666544 4556666665542 44666556788999999999999999998877777766665544
No 420
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=27.52 E-value=1.2e+02 Score=21.72 Aligned_cols=46 Identities=7% Similarity=0.061 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
.+..+.+|-.+.+ .+|.++|-..|++++...+... .+++..|.+.+
T Consensus 41 ~~~il~l~l~~L~---d~DsyVYL~aI~~L~~La~~~p-~~vl~~L~~~y 86 (92)
T PF10363_consen 41 IPKILDLFLSQLK---DEDSYVYLNAIKGLAALADRHP-DEVLPILLDEY 86 (92)
T ss_pred HHHHHHHHHHHcC---CCCchHHHHHHHHHHHHHHHCh-HHHHHHHHHHH
Confidence 4445555554444 3688888888888877665543 24555555443
No 421
>PRK09462 fur ferric uptake regulator; Provisional
Probab=27.02 E-value=3e+02 Score=21.31 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=32.4
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 148 KWMLSKGQGATMGTYDTLLLAFDKD-HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 148 ~~M~~~g~~p~~~ty~~Ll~~~~~~-g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+.|.+.|++++..= ..++..+... +..-.|.+|++.|.+.+... +..|-=-.|..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i-~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEI-GLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHCCCEE
Confidence 34556677666543 3444444443 34556777777777766432 4333222234445555443
No 422
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.69 E-value=3.9e+02 Score=25.56 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.+++-|.-.|.+.+|.++.+++-- -+---.+++-+|+.+.-+.|+-...+.++++....|.. |-|.|-.||.|.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI-----T~nQMtkGf~RV 587 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI-----TTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce-----eHHHhhhhhhhh
Confidence 788889999999999998877531 11223578999999999999988778888887766554 478888888764
Q ss_pred CChhHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHHcCC
Q 023326 209 DMPNKIIEVFADMEELG-VRPDED-TVRRIASAFQRVGQ 245 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g-~~Pd~~-ty~~ll~a~~~~G~ 245 (284)
. +.+.+.. -.||.. -|+..+.-|-+.|-
T Consensus 588 ~---------dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 588 Y---------DSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred h---------ccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 2 3333333 235555 56666666767763
No 423
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=26.39 E-value=7.4e+02 Score=25.67 Aligned_cols=138 Identities=11% Similarity=0.040 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHH--HHHHHH-----HHc
Q 023326 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-----FDKDHRADEAE--SLWNMI-----LHT 188 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-----~~~~g~~~~A~--~l~~~m-----~~~ 188 (284)
.+.++.+..+..+..-.|+.++|..+..+-.+..-.-|++.|...... +-..|+...+. .-|+.. .+.
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~ 573 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQK 573 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 355677777777888889999988887765554333344333322221 33445333222 222222 222
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChhHHHHH----HHHHHHCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 189 QTRSISKRLFSRMISLYDHHDMPNKIIEV----FADMEELGVRPDEDTVR--RIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 189 ~~~~~~~~tyn~lI~~~~~~G~~~~A~~l----~~~M~~~g~~Pd~~ty~--~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
....+-..++.-+..++.+ ++.+..- +.--......|-..-+. .|...+...|+.|+|...++++..-..
T Consensus 574 ~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 574 PRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred ccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 2222244556667777666 3333332 22222233333333333 667788889999999999999885533
No 424
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=26.28 E-value=2.4e+02 Score=19.86 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHHc
Q 023326 174 RADEAESLWNMILHT 188 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~ 188 (284)
+.+++.++++.+...
T Consensus 45 r~~q~~~LLd~L~~R 59 (84)
T cd08326 45 RRDQARQLLIDLETR 59 (84)
T ss_pred HHHHHHHHHHHHHhc
Confidence 444455555544443
No 425
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=25.79 E-value=5.6e+02 Score=24.08 Aligned_cols=80 Identities=10% Similarity=0.025 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSISKR--LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDK 248 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~~~--tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~ 248 (284)
.|+.+.|.+-|+.|.+. | ... -.-.|.-.--+.|+.+-|...-++- .+..|..- ....+|...|..|++|.
T Consensus 133 eG~~~~Ar~kfeAMl~d---P-EtRllGLRgLyleAqr~GareaAr~yAe~A--a~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---P-ETRLLGLRGLYLEAQRLGAREAARHYAERA--AEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhcC---h-HHHHHhHHHHHHHHHhcccHHHHHHHHHHH--HhhccCCchHHHHHHHHHHhcCChHH
Confidence 46666666666666532 1 110 0112222223345555554443332 22233222 44455555555555555
Q ss_pred HHHHHHHhH
Q 023326 249 QKLVLKKYL 257 (284)
Q Consensus 249 a~~l~~~m~ 257 (284)
|.++++.-+
T Consensus 207 AlkLvd~~~ 215 (531)
T COG3898 207 ALKLVDAQR 215 (531)
T ss_pred HHHHHHHHH
Confidence 555555443
No 426
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=25.65 E-value=1e+02 Score=20.80 Aligned_cols=40 Identities=13% Similarity=-0.020 Sum_probs=24.9
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH 173 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g 173 (284)
..-.|+.+.+.+++++....|+.|..+....|..+.-+-|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777677777666666666654433
No 427
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=25.47 E-value=2e+02 Score=22.27 Aligned_cols=26 Identities=8% Similarity=-0.022 Sum_probs=14.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.++-.....|+++.|+++.+-..+.|
T Consensus 53 ~~mvW~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 53 TVMVWLFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhHhhhhcccCHHHHHHHHHHHHHcC
Confidence 34444455555555555555555555
No 428
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=25.11 E-value=3.3e+02 Score=25.08 Aligned_cols=64 Identities=5% Similarity=-0.100 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATM-GTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
-+|.+.+-+++.+..+..+|..=+..|....-.|-. .-+...+..-.-.++.+.....+++|.+
T Consensus 159 ~iT~e~L~da~~r~N~~rea~~k~~kL~~~~P~plsg~D~~~~~~~~~~~~d~d~~~~~l~~l~e 223 (379)
T COG1775 159 EITEEKLRDAIARYNRLREALAKLYKLAKHKPSPLSGSDAFNVMAFAVFLRDKDAFIEELEELIE 223 (379)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHhhHHHHhcchHHHHHHHHHHHH
Confidence 356666666666666666666666555544333322 1122222222233455555555555543
No 429
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.03 E-value=3.6e+02 Score=24.79 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=28.3
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCHH--HHHHHHHHHHh--CCChhHHHHHHHHHHHC
Q 023326 171 KDHRADEAESLWNMILHTQTRSISKR--LFSRMISLYDH--HDMPNKIIEVFADMEEL 224 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~~~~~~--tyn~lI~~~~~--~G~~~~A~~l~~~M~~~ 224 (284)
..+++..|.++++++.+. +. .+.. .|..+..||-. ..++++|.+.|+.....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~-~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LP-GREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CC-chhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 556777777777777665 22 2222 34444444433 45566666666665433
No 430
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=24.88 E-value=4.6e+02 Score=22.78 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 166 LLAFD-KDHRADEAESLWNMILHTQTR---SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 166 l~~~~-~~g~~~~A~~l~~~m~~~~~~---~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
+...| ..+-.+.|.++|+++.+.+.. ..+...-..++....+.|+.+.-..+++..+.. .+...-..++.+++
T Consensus 136 ~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa 212 (324)
T PF11838_consen 136 LSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALA 212 (324)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHT
T ss_pred HHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhh
Confidence 44444 222367788999999885332 234455677788888888866655555554432 36777788888888
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
...+.+...++++.....
T Consensus 213 ~~~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 213 CSPDPELLKRLLDLLLSN 230 (324)
T ss_dssp T-S-HHHHHHHHHHHHCT
T ss_pred ccCCHHHHHHHHHHHcCC
Confidence 888888888888877764
No 431
>cd00045 DED The Death Effector Domain: a protein-protein interaction domain. Death Effector Domains comprise a subfamily of the Death Domain (DD) superfamily. DED-containing proteins include Fas-Associated via Death Domain (FADD), Astrocyte phosphoprotein PEA-15, the initiator caspases (caspase-8 and -10), and FLICE-inhibitory protein (FLIP), among others. These proteins are prominent components of the programmed cell death (apoptosis) pathway. Some members also have non-apoptotic functions such as regulation of insulin signaling (DEDD and PEA15) and cell cycle progression (DEDD). DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes.
Probab=24.83 E-value=1.7e+02 Score=20.07 Aligned_cols=39 Identities=18% Similarity=0.365 Sum_probs=23.1
Q ss_pred ChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHH
Q 023326 210 MPNKIIEVFADMEELG-VRPDEDTVRRIASAFQRVGQDDKQK 250 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~~G~~d~a~ 250 (284)
++..++++|.+|++.| +.|| ....|...+...|+.|-+.
T Consensus 35 ~~~s~l~lf~~Le~~~~l~~~--nl~~L~~lL~~i~R~DL~~ 74 (77)
T cd00045 35 KIKTPFDLFLVLERQGKLGED--NLSYLEELLRSIGRNDLLK 74 (77)
T ss_pred ccCCHHHHHHHHHHcCCCCCc--hHHHHHHHHHHcCHHHHHH
Confidence 4556778888888887 5564 3333444455556555443
No 432
>PHA02875 ankyrin repeat protein; Provisional
Probab=24.77 E-value=2.4e+02 Score=25.80 Aligned_cols=13 Identities=15% Similarity=0.542 Sum_probs=5.8
Q ss_pred HHHHHHHcCCCCC
Q 023326 146 VAKWMLSKGQGAT 158 (284)
Q Consensus 146 l~~~M~~~g~~p~ 158 (284)
+++.+.+.|..|+
T Consensus 117 iv~~Ll~~gad~~ 129 (413)
T PHA02875 117 IMKLLIARGADPD 129 (413)
T ss_pred HHHHHHhCCCCCC
Confidence 3344444454443
No 433
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=24.74 E-value=1.5e+02 Score=20.44 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD 172 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~ 172 (284)
++++++...++++...|+.++.. .+.|...+-..
T Consensus 18 ~~~~~~~~~~~~l~~~G~s~~~I-l~~l~~~l~~~ 51 (89)
T PF08542_consen 18 GDFKEARKKLYELLVEGYSASDI-LKQLHEVLVES 51 (89)
T ss_dssp TCHHHHHHHHHHHHHTT--HHHH-HHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHh
Confidence 46677777776666666655432 24444444443
No 434
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=24.73 E-value=5.4e+02 Score=23.59 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
+.+|..+|++-++. -..+|+ ++.+...--...+.+.+.+..- -+..=.-|-..--+.|+..+|.+.|+
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnv-l~YIKRRLAMCARklGrlrEA~K~~R 299 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNV-LVYIKRRLAMCARKLGRLREAVKIMR 299 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccch-hhHHHHHHHHHHHHhhhHHHHHHHHH
Q ss_pred H-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 220 D-MEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 220 ~-M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+ |++..+.--......||.+|....-+.+...++.+.
T Consensus 300 DL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 300 DLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 435
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.45 E-value=4.5e+02 Score=23.76 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
.++|+.|.+.++.| .-..|--+--.+.+.=.+.+.+.+++.+.....+ |..|+..||..
T Consensus 263 ~EL~~~L~~~~i~P-qfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcsm 321 (370)
T KOG4567|consen 263 EELWRHLEEKEIHP-QFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCSM 321 (370)
T ss_pred HHHHHHHHhcCCCc-cchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHHH
Confidence 57899999998887 7777766666778888899999999988654333 88888888754
No 436
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.35 E-value=1.7e+02 Score=26.38 Aligned_cols=34 Identities=18% Similarity=0.044 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
=.|++.|.++|.+++|.++.........+-++..
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~ 143 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIP 143 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHHHhccCch
Confidence 4678888888888888888766655444323433
No 437
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=24.24 E-value=2.4e+02 Score=19.31 Aligned_cols=41 Identities=17% Similarity=0.387 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 210 MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
..+.+.+++..-... .+...|...|+.++.+.|..+-|..+
T Consensus 45 ~~~~~~~lL~~W~~~--~g~~at~~~L~~aL~~~~~~d~a~~i 85 (88)
T smart00005 45 LAEQSVQLLRLWEQR--EGKNATLGTLLEALRKMGRDDAVELL 85 (88)
T ss_pred HHHHHHHHHHHHHHc--cchhhHHHHHHHHHHHcChHHHHHHH
Confidence 345666666665444 22336778888888888887766544
No 438
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=24.04 E-value=2.5e+02 Score=22.54 Aligned_cols=82 Identities=9% Similarity=0.002 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCCHHHHHHHHHHHHhCCC
Q 023326 139 QWLRVIQVAKWMLSKG----QGATM---GTYDTLLLAFDKDHRADEAESLWNMILH-TQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g----~~p~~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+-++|..+|..+.+.. +.++. ..+..++..+.+..+ -++++.+.+ .|+.+ ....+.-++..+++.-.
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----p~l~~~l~~~~~i~~-~~~~~~W~~~lF~~~~~ 182 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD----PDLYKHLKDKLGIDP-SLYALRWFLTLFARELP 182 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC----HHHHHHHHHhcCCCc-hhHHHHHHHHHHHhhCC
Confidence 4567777777765532 33442 233333333333332 356777774 67765 77778888888888888
Q ss_pred hhHHHHHHHHHHHCC
Q 023326 211 PNKIIEVFADMEELG 225 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g 225 (284)
++.+..+++.+...|
T Consensus 183 ~~~~~riwD~~l~eG 197 (199)
T smart00164 183 LEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999888777
No 439
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=22.99 E-value=1.4e+02 Score=22.09 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~ 175 (284)
.++..+.+.+..-.|.++++.|.+.|...+..|.=--|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45555566655667777777777776666655433444555555543
No 440
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=22.86 E-value=9.8e+02 Score=25.83 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+.+|-.+|++.+|+.+..+|... -|.. +-..|+.-+...|+.-+|-+++.+.
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 44455555555555555544211 1221 2245556666666666655555444
No 441
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=22.38 E-value=3.6e+02 Score=28.37 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=43.9
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023326 136 KRGQWLRVIQVAKWMLSKGQGATMGT-YDTLLLAFDKDHRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~~p~~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 192 (284)
....+.+++.+|+.|.+.|+....-. |-..=..+.+.+.+.+|..+|..=++....|
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP 147 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEP 147 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 45668899999999999988776544 4444444567788999999998888888887
No 442
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=22.31 E-value=1.4e+02 Score=20.21 Aligned_cols=10 Identities=20% Similarity=0.066 Sum_probs=3.5
Q ss_pred HHHHHCCCCC
Q 023326 219 ADMEELGVRP 228 (284)
Q Consensus 219 ~~M~~~g~~P 228 (284)
+-+.+.|..+
T Consensus 76 ~~Ll~~g~~~ 85 (89)
T PF12796_consen 76 KLLLEHGADV 85 (89)
T ss_dssp HHHHHTTT-T
T ss_pred HHHHHcCCCC
Confidence 3333444443
No 443
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=22.27 E-value=5.2e+02 Score=22.38 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 125 IAAAKALRILRKRGQ---WLRVIQVAKWMLSK-GQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~---~~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
.++..+..+|...+. +++|..+++.+.+. |-+ ..+|.-=|..+.+.++.+.+.+++..|+..-.. ....|..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~--~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH--SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHhccc--ccchHHH
Confidence 344577777777765 44677777777554 222 345555566676789999999999999876432 2333666
Q ss_pred HHHHH---HhCCChhHHHHHHHHHHHCCCCCCHH
Q 023326 201 MISLY---DHHDMPNKIIEVFADMEELGVRPDED 231 (284)
Q Consensus 201 lI~~~---~~~G~~~~A~~l~~~M~~~g~~Pd~~ 231 (284)
++..+ ... ....|...+..+...-+.|...
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 66665 333 3356777777776665665543
No 444
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=22.27 E-value=6.5e+02 Score=23.53 Aligned_cols=99 Identities=12% Similarity=-0.029 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----Hc--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWML-----SK--GQGA-----TMGTYDTLLLAFDKDHRADEAESLWNMILHT-- 188 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~-----~~--g~~p-----~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-- 188 (284)
++.+.-.+|..+....++.+-++..+... .. |-.| .-++...|++.++-.||+..|.++++.+--.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 33444455666666766666655544421 01 1111 1266778888899999999999987765211
Q ss_pred C----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 189 Q----TRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 189 ~----~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+ +.+-.+.+|=.+==+|...+++.+|+++|...
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11112344555555667778888888888764
No 445
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.14 E-value=2.9e+02 Score=19.44 Aligned_cols=55 Identities=9% Similarity=0.072 Sum_probs=28.6
Q ss_pred HHHcCCHHHHHHHHHHH----HHcCCCCC--HHHHH--HHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 134 LRKRGQWLRVIQVAKWM----LSKGQGAT--MGTYD--TLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M----~~~g~~p~--~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
..+.|++.+|++-+.+. ...+.... ...+. .+-......|+.++|...+++-++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667777775444443 33333221 12222 2233345567777777777776554
No 446
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=22.09 E-value=2.7e+02 Score=21.90 Aligned_cols=68 Identities=10% Similarity=0.009 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 156 GATMGTYDTLLLAFDKD---HRADEAESLWNMILHTQTRSISKRLF-SRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 156 ~p~~~ty~~Ll~~~~~~---g~~~~A~~l~~~m~~~~~~~~~~~ty-n~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+...+--.+--++.++ .++.++..+++++.+... |....-| -.|--++.+.|++++++.+.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~-~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAH-PERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcC-cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444444555554 467778889999987322 2233223 34446889999999999998887654
No 447
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=21.88 E-value=2.1e+02 Score=21.86 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFA 219 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~ 219 (284)
++..++|..|.+.++--.-...|-..-.-+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566777777777653234446666677777788888887775
No 448
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=21.72 E-value=9.2e+02 Score=25.10 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHcC--CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 126 AAAKALRILRKRGQ---WLRVIQVAKWMLSKG--QGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 126 ~y~~~i~~~~~~g~---~~~A~~l~~~M~~~g--~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
....++...|..|. .+.|...|.+..... ++||. .+|+..+. .| ..+.|+.+.+.+....+...-
T Consensus 673 l~~~~~~~a~~~~~~~~~~~a~~~f~~~~~~~~~ip~~lr~~vy~~~~~----~g----~~~~w~~~~~~y~~~~~~~e~ 744 (882)
T KOG1046|consen 673 LRVSVLSFACRFGHEECLKKAVELFRQWLAGTNPIPPDLREVVYCTAVQ----FG----TEEDWEQLLELYKKETTAAEK 744 (882)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCCCChhhhhhhhhHHHH----hc----CHhHHHHHHHHHhccccHHHH
Confidence 34455555565553 567777777776652 33343 34444443 22 233444454444444455667
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+.++.+++...+...-.++++...+.+..++...+..+........-.+.|.+.+.
T Consensus 745 ~~~l~al~~~~~~~~l~~~l~~~~~~~~v~~qd~~~~~~~~~~~~~g~~~a~~~~~ 800 (882)
T KOG1046|consen 745 RKLLNALSCSKDPWLLQRLLDLAFDAENVRDQDVLTLLQGISGNPRGVELAWKFLQ 800 (882)
T ss_pred HHHHHHhccCccHHHHHHHHHHhcccccccchhHHHHHHHHhcCcccHHHHHHHHH
Confidence 88888888888887777777665555566677777766666555555555555543
No 449
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.68 E-value=6e+02 Score=22.89 Aligned_cols=83 Identities=10% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC----------CCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 150 MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT---QT----------RSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 150 M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~----------~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
..+.|+.-+......|+.. ..|++..+...++.+... .+ .+.....|. ++++. ..|+.++|+.
T Consensus 180 ~~~~g~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~ 255 (367)
T PRK14970 180 AVKEGIKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLL 255 (367)
T ss_pred HHHcCCCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHH
Confidence 3455766555555555543 236777777777766521 10 111222344 45554 4488999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q 023326 217 VFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+++++...|..|- .....++
T Consensus 256 ~~~~l~~~~~~~~-~il~~l~ 275 (367)
T PRK14970 256 AFNEILRKGFDGH-HFIAGLA 275 (367)
T ss_pred HHHHHHHcCCCHH-HHHHHHH
Confidence 9999888887773 3334443
No 450
>PHA02875 ankyrin repeat protein; Provisional
Probab=21.49 E-value=2e+02 Score=26.38 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=68.3
Q ss_pred HccCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023326 117 AWETEFPLIA--AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMG--TYDTLLLAFDKDHRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 117 ~~~~~p~~~~--y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 192 (284)
..+..|+... ....|...++.|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+....++ +.|...
T Consensus 23 ~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~~~~~ 94 (413)
T PHA02875 23 DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL----DLGKFA 94 (413)
T ss_pred HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH----HcCCcc
Confidence 3454555433 234555666777754 456666777766643 1223455556778877655544 444332
Q ss_pred CCHH--HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 023326 193 ISKR--LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT--VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 193 ~~~~--tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t--y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
.+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+++
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~ 156 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID 156 (413)
T ss_pred cccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 1111 0134445556667764 4455556676665432 2345566667888876666654
No 451
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=21.45 E-value=3.1e+02 Score=25.22 Aligned_cols=82 Identities=11% Similarity=-0.032 Sum_probs=53.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDK 248 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~ 248 (284)
|-+.|.+++|...|..-+.. .|.|.++|.---.+|.+...+..|+.=-..-... =...+.||.+.|.-..
T Consensus 107 yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQARE 176 (536)
T ss_pred hhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHHH
Confidence 66888999999888876654 4557777877788888888877666533332211 1345677877776666
Q ss_pred HHHHHHHhHHhc
Q 023326 249 QKLVLKKYLSKW 260 (284)
Q Consensus 249 a~~l~~~m~~~~ 260 (284)
+.....+.++.+
T Consensus 177 ~Lg~~~EAKkD~ 188 (536)
T KOG4648|consen 177 SLGNNMEAKKDC 188 (536)
T ss_pred HHhhHHHHHHhH
Confidence 655555555443
No 452
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=21.06 E-value=91 Score=23.77 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=17.3
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTV 233 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty 233 (284)
-.|+.+.|..+++.++.+|+.|-...|
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw 35 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLW 35 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHH
Confidence 357777888888888888877766644
No 453
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.02 E-value=2e+02 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.9
Q ss_pred HhcCCHHHHHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMIL 186 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~ 186 (284)
.+.++++.|.+|...|.
T Consensus 101 L~~~d~~~A~~Ih~~L~ 117 (157)
T PF07304_consen 101 LQARDYDAADEIHVDLM 117 (157)
T ss_dssp HHHT-HHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555544444
No 454
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.97 E-value=3.1e+02 Score=27.80 Aligned_cols=65 Identities=8% Similarity=0.054 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
|+..||++|.-++..-.+ ..++.+....| +.|+.......|...+..-|-+--|+..+.+|.+.+
T Consensus 213 NTCFFNavMQnL~qt~~L---~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ 281 (877)
T KOG1873|consen 213 NTCFFNAVMQNLAQTPAL---RDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSETT 281 (877)
T ss_pred chhhHHHHHHHHhhcHHH---HHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhhcc
Confidence 577889999888876544 56777777777 566677777888888888888888888888888764
No 455
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=20.80 E-value=3.5e+02 Score=19.86 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+..+..+++...|.+|+.......|. .|......++++.+.....
T Consensus 5 ~V~~Aa~~L~~~G~~pT~~~Vr~~lG----~GS~~ti~~~l~~w~~~~~ 49 (120)
T PF11740_consen 5 DVIEAADELLAAGKKPTVRAVRERLG----GGSMSTISKHLKEWREERE 49 (120)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHC----CCCHHHHHHHHHHHHHhhh
Confidence 34444555666666665444333333 5555556666655554433
No 456
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=1.2e+02 Score=29.43 Aligned_cols=70 Identities=9% Similarity=0.076 Sum_probs=40.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCHHH----HHHHHHHHHhCCChhHHHHHH
Q 023326 146 VAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR---SISKRL----FSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 146 l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~---~~~~~t----yn~lI~~~~~~G~~~~A~~l~ 218 (284)
+++.+-..|++||.+||++ .-+++...+-..|++.|-. ..+..+ -.-=|..-||...+|+-+++|
T Consensus 255 IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~iw 326 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLRIW 326 (712)
T ss_pred HHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHHHH
Confidence 4455666799999999874 2344444444444443321 000000 011133448889999999999
Q ss_pred HHHHH
Q 023326 219 ADMEE 223 (284)
Q Consensus 219 ~~M~~ 223 (284)
+||..
T Consensus 327 ~EM~k 331 (712)
T KOG1147|consen 327 EEMKK 331 (712)
T ss_pred HHHhc
Confidence 99964
No 457
>cd01670 Death Death Domain: a protein-protein interaction domain. Death Domains (DDs) are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. Structural analysis of DD-DD complexes show that the domains interact with each other in many different ways. DD-containing proteins serve as adaptors in signaling pathways and they can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways. In invertebrates, they are involved in transcriptional regulation of zygotic patterning genes in insect embryogenesis, and are components of the ToII/NF-kappaB pathway, a conserved innate immune pathway in a
Probab=20.68 E-value=2.5e+02 Score=18.74 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
.+.+.+++....... ++..|...|+.++.+.|..+.|.++
T Consensus 38 ~~~~~~mL~~W~~~~--~~~at~~~L~~aL~~~~~~~~a~~~ 77 (79)
T cd01670 38 REQAYQLLLKWEERE--GDNATVGNLIEALREIGRRDDAAKL 77 (79)
T ss_pred HHHHHHHHHHHHhcc--CcCcHHHHHHHHHHHcCHHHHHHHh
Confidence 355556665554442 2356667777777777665555443
No 458
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.64 E-value=5.1e+02 Score=24.43 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=52.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC--CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHH--HHHcC
Q 023326 170 DKDHRADEAESLWNMILHTQTR--SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT-VRRIASA--FQRVG 244 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~--~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t-y~~ll~a--~~~~G 244 (284)
.+.|.+..|.+.+.+-+...-. .++...|--.-....+.|+.++|+.--++-.. .|..- ...+..| +-..+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988764321 12444466666778889999999986665432 24332 2223333 33456
Q ss_pred CHHHHHHHHHHhH
Q 023326 245 QDDKQKLVLKKYL 257 (284)
Q Consensus 245 ~~d~a~~l~~~m~ 257 (284)
++++|.+-++...
T Consensus 336 ~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 336 KWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666544
No 459
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=20.58 E-value=8.2e+02 Score=24.04 Aligned_cols=119 Identities=9% Similarity=0.211 Sum_probs=70.7
Q ss_pred HHHHcC--CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHH--------------HHHHHHcCCC
Q 023326 133 ILRKRG--QWLRVIQVAKWMLSK-----GQGATMGTYDTLLLAFDKDHRADEAESL--------------WNMILHTQTR 191 (284)
Q Consensus 133 ~~~~~g--~~~~A~~l~~~M~~~-----g~~p~~~ty~~Ll~~~~~~g~~~~A~~l--------------~~~m~~~~~~ 191 (284)
.|.... .+-+|.++++.+.+. .+--|+..||.+|.+... +...+ |+.+.+...+
T Consensus 587 ~Y~~~d~~nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgIhe-----qmK~lmkl~PR~~iL~DiHF~aLL~K~kK 661 (782)
T PF07218_consen 587 KYVEHDKSNIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGIHE-----QMKNLMKLMPRKPILKDIHFEALLNKEKK 661 (782)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-----HHHHHHHhCCCcchhHHHHHHHHhhhccc
Confidence 455555 788899888887653 366789999999988643 22222 4555444333
Q ss_pred C------------CCHHHH----------HHHHHHHHhCCChhHHHHHHHHHHH-------C------CCCCCHHHHHHH
Q 023326 192 S------------ISKRLF----------SRMISLYDHHDMPNKIIEVFADMEE-------L------GVRPDEDTVRRI 236 (284)
Q Consensus 192 ~------------~~~~ty----------n~lI~~~~~~G~~~~A~~l~~~M~~-------~------g~~Pd~~ty~~l 236 (284)
| |++..| -.+|.+|.....- +..++..+|+- . .-.||..-+.-|
T Consensus 662 p~K~~~td~v~YdPTVKsyAL~~LeR~PmvsvInsfFEaKKK-~Ls~i~aqmKLDlfSL~nedlKiP~d~~~nsKL~~kL 740 (782)
T PF07218_consen 662 PQKITRTDYVLYDPTVKSYALTELEREPMVSVINSFFEAKKK-DLSDIMAQMKLDLFSLTNEDLKIPNDKGANSKLTAKL 740 (782)
T ss_pred ccccccccceecCchHHHHHhhhhccchHHHHHHHHHHHHHH-HHHHHHHHHhhhHHhhccccccCCCCCCcchHHHHHH
Confidence 1 122222 3455555443321 22334444431 1 124777888889
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHhcCC
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSKWKY 262 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~~~~ 262 (284)
|+-|- .+...+|++|..+|..
T Consensus 741 iskYK-----~EIK~~FkEMr~dYVk 761 (782)
T PF07218_consen 741 ISKYK-----KEIKKLFKEMRDDYVK 761 (782)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHH
Confidence 98884 3577889999887763
No 460
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=20.38 E-value=4.2e+02 Score=23.58 Aligned_cols=59 Identities=7% Similarity=0.054 Sum_probs=43.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA--SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll--~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...+...|.++.|+..+++-...--.|-..-|.-|+ ..|...|..+.|..++.++.+..
T Consensus 220 A~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~~~~ 280 (301)
T TIGR03362 220 ARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALDQQI 280 (301)
T ss_pred HHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456677888999999888743333455555555555 45889999999999999887653
No 461
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.24 E-value=8.5e+02 Score=24.12 Aligned_cols=77 Identities=10% Similarity=0.140 Sum_probs=45.7
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------------CCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 151 LSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQT------------RSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 151 ~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~------------~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
.+.|+..+......|+... .|++..|...++.+..... ...+...+-.|+.+.. .|+.++|+.++
T Consensus 194 ~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~~~~~~iF~L~dai~-~~~~~~al~ll 270 (614)
T PRK14971 194 SKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVVSFTGGNITYKSVIENLNILDYDYYFRLTDALL-AGKVSDSLLLF 270 (614)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCccHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 3457766665555554333 4778887777766532211 0112233444555544 47888999999
Q ss_pred HHHHHCCCCCCH
Q 023326 219 ADMEELGVRPDE 230 (284)
Q Consensus 219 ~~M~~~g~~Pd~ 230 (284)
++|...|..|..
T Consensus 271 ~~Ll~~g~~~~~ 282 (614)
T PRK14971 271 DEILNKGFDGSH 282 (614)
T ss_pred HHHHHcCCCHHH
Confidence 998888877653
No 462
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=20.15 E-value=1.9e+02 Score=16.49 Aligned_cols=7 Identities=0% Similarity=0.221 Sum_probs=3.4
Q ss_pred ChhHHHH
Q 023326 210 MPNKIIE 216 (284)
Q Consensus 210 ~~~~A~~ 216 (284)
+++.|.+
T Consensus 29 nve~A~~ 35 (37)
T PF00627_consen 29 NVERAVD 35 (37)
T ss_dssp SHHHHHH
T ss_pred CHHHHHH
Confidence 4555444
No 463
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=20.11 E-value=3.2e+02 Score=19.83 Aligned_cols=44 Identities=5% Similarity=0.065 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 212 NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|...++++.-.+. .....+|.+||.++.++|.-..|..+-+...
T Consensus 50 Eq~~qmL~~W~~~--~G~~a~~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 50 EQKVQLLRAWYQS--HGKTGAYRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHHHHHHHccchhHHHHHHHHHH
Confidence 4444444443322 2233456777777777777777777665544
Done!