Query 023326
Match_columns 284
No_of_seqs 256 out of 2029
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 04:55:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023326.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023326hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.4E-30 4.8E-35 245.4 23.0 162 99-264 39-209 (501)
2 4g26_A Pentatricopeptide repea 99.9 3.4E-27 1.2E-31 222.3 18.4 137 124-261 26-171 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 8.2E-25 2.8E-29 215.0 11.0 127 124-251 127-257 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.8 1.6E-20 5.4E-25 184.8 13.9 102 159-261 127-232 (1134)
5 2xpi_A Anaphase-promoting comp 99.5 1.7E-12 5.7E-17 122.8 21.4 155 99-260 386-546 (597)
6 2xpi_A Anaphase-promoting comp 99.4 1.6E-11 5.3E-16 116.1 21.6 156 99-260 420-580 (597)
7 2fo7_A Synthetic consensus TPR 99.1 1.8E-08 6.1E-13 74.9 18.2 130 126-259 3-132 (136)
8 2ho1_A Type 4 fimbrial biogene 99.0 1.1E-07 3.6E-12 79.5 23.4 155 99-260 84-239 (252)
9 2ho1_A Type 4 fimbrial biogene 99.0 1.1E-07 3.7E-12 79.4 23.3 156 98-259 49-204 (252)
10 1w3b_A UDP-N-acetylglucosamine 99.0 3.6E-08 1.2E-12 88.1 20.4 132 123-259 236-368 (388)
11 2vq2_A PILW, putative fimbrial 99.0 2.3E-07 7.8E-12 75.4 21.6 134 123-258 75-210 (225)
12 3mkr_A Coatomer subunit epsilo 99.0 7.7E-08 2.6E-12 83.7 19.7 130 122-257 128-262 (291)
13 2vq2_A PILW, putative fimbrial 98.9 5.8E-07 2E-11 73.0 21.5 157 98-260 20-177 (225)
14 1w3b_A UDP-N-acetylglucosamine 98.9 2.3E-07 7.8E-12 82.8 20.2 151 99-259 46-198 (388)
15 3as5_A MAMA; tetratricopeptide 98.9 3.7E-07 1.2E-11 71.7 19.2 133 123-259 41-173 (186)
16 2y4t_A DNAJ homolog subfamily 98.9 1.7E-07 5.9E-12 84.9 18.9 132 122-259 209-358 (450)
17 2q7f_A YRRB protein; TPR, prot 98.9 7.2E-07 2.5E-11 73.6 21.1 155 98-260 69-223 (243)
18 2y4t_A DNAJ homolog subfamily 98.8 3E-07 1E-11 83.3 20.1 152 99-259 73-240 (450)
19 3mkr_A Coatomer subunit epsilo 98.8 4E-07 1.4E-11 79.1 18.6 161 90-259 66-229 (291)
20 3uq3_A Heat shock protein STI1 98.8 4.9E-07 1.7E-11 75.0 18.1 157 99-259 51-236 (258)
21 2pl2_A Hypothetical conserved 98.8 1.8E-06 6.1E-11 71.3 20.2 132 123-259 38-180 (217)
22 3edt_B KLC 2, kinesin light ch 98.7 2.9E-07 1E-11 77.3 15.5 163 98-260 55-282 (283)
23 3uq3_A Heat shock protein STI1 98.7 1.8E-06 6.3E-11 71.5 20.2 126 134-260 48-203 (258)
24 3edt_B KLC 2, kinesin light ch 98.7 3.9E-07 1.3E-11 76.5 15.8 136 124-259 43-198 (283)
25 4eqf_A PEX5-related protein; a 98.7 1.9E-06 6.4E-11 76.0 20.7 154 99-260 112-311 (365)
26 2q7f_A YRRB protein; TPR, prot 98.7 1.4E-06 4.7E-11 71.8 18.6 154 99-260 36-189 (243)
27 3as5_A MAMA; tetratricopeptide 98.7 7.6E-07 2.6E-11 69.8 16.2 131 126-260 10-140 (186)
28 3cv0_A Peroxisome targeting si 98.7 3.9E-07 1.3E-11 78.5 15.5 132 123-257 171-313 (327)
29 4eqf_A PEX5-related protein; a 98.7 5.3E-07 1.8E-11 79.6 16.6 99 123-224 212-310 (365)
30 1fch_A Peroxisomal targeting s 98.7 5.7E-06 2E-10 72.6 22.4 154 99-259 111-314 (368)
31 3nf1_A KLC 1, kinesin light ch 98.7 3.7E-07 1.3E-11 78.0 14.1 161 99-259 82-307 (311)
32 3vtx_A MAMA; tetratricopeptide 98.7 1.3E-05 4.4E-10 63.5 22.2 154 98-259 17-170 (184)
33 1fch_A Peroxisomal targeting s 98.7 6.8E-06 2.3E-10 72.1 22.3 156 98-259 76-280 (368)
34 3nf1_A KLC 1, kinesin light ch 98.7 7.6E-07 2.6E-11 76.0 15.7 161 99-259 40-224 (311)
35 1xnf_A Lipoprotein NLPI; TPR, 98.6 1.4E-06 5E-11 73.1 16.7 129 126-259 45-173 (275)
36 3hym_B Cell division cycle pro 98.6 4E-06 1.4E-10 72.1 19.6 135 123-260 124-266 (330)
37 3cv0_A Peroxisome targeting si 98.6 1.4E-05 4.9E-10 68.5 22.9 100 158-260 171-270 (327)
38 3hym_B Cell division cycle pro 98.6 2.6E-06 8.9E-11 73.3 18.2 135 123-259 158-299 (330)
39 2fo7_A Synthetic consensus TPR 98.6 9.4E-06 3.2E-10 59.7 17.8 120 98-224 13-132 (136)
40 1hh8_A P67PHOX, NCF-2, neutrop 98.5 1E-05 3.6E-10 65.5 18.6 124 131-260 13-151 (213)
41 1b89_A Protein (clathrin heavy 98.5 2.6E-08 8.8E-13 91.4 2.8 107 124-253 94-200 (449)
42 3vtx_A MAMA; tetratricopeptide 98.5 1.9E-05 6.6E-10 62.5 19.4 133 123-259 4-136 (184)
43 2pl2_A Hypothetical conserved 98.5 6E-06 2.1E-10 68.1 16.8 133 123-260 4-148 (217)
44 1b89_A Protein (clathrin heavy 98.5 1.1E-07 3.6E-12 87.3 6.3 122 115-257 113-234 (449)
45 1na0_A Designed protein CTPR3; 98.5 1.3E-05 4.6E-10 58.2 16.9 114 124-241 9-122 (125)
46 4i17_A Hypothetical protein; T 98.5 1.4E-05 4.9E-10 65.6 18.8 131 125-259 8-146 (228)
47 2ond_A Cleavage stimulation fa 98.5 1.6E-05 5.4E-10 69.1 19.7 154 100-261 113-272 (308)
48 3ieg_A DNAJ homolog subfamily 98.5 3.7E-05 1.2E-09 66.6 22.1 153 99-260 50-218 (359)
49 2gw1_A Mitochondrial precursor 98.5 6E-06 2.1E-10 75.7 17.9 88 134-225 16-103 (514)
50 2gw1_A Mitochondrial precursor 98.5 2.2E-06 7.6E-11 78.6 14.0 134 122-259 268-401 (514)
51 4abn_A Tetratricopeptide repea 98.5 2.4E-06 8.2E-11 79.3 14.3 152 100-259 116-287 (474)
52 1xnf_A Lipoprotein NLPI; TPR, 98.5 4.5E-06 1.5E-10 70.0 14.7 124 134-260 15-141 (275)
53 3ieg_A DNAJ homolog subfamily 98.5 3E-05 1E-09 67.2 20.3 153 99-259 16-183 (359)
54 1a17_A Serine/threonine protei 98.4 1.5E-05 5E-10 61.5 16.4 122 134-259 23-146 (166)
55 3fp2_A TPR repeat-containing p 98.4 8.4E-06 2.9E-10 75.3 17.6 152 99-259 256-407 (537)
56 4gyw_A UDP-N-acetylglucosamine 98.4 8.2E-06 2.8E-10 79.8 17.5 150 98-258 21-173 (723)
57 4gyw_A UDP-N-acetylglucosamine 98.4 1.4E-05 4.7E-10 78.2 18.7 130 124-259 9-140 (723)
58 3u4t_A TPR repeat-containing p 98.4 1.5E-05 5.2E-10 66.8 16.6 130 126-259 39-171 (272)
59 3fp2_A TPR repeat-containing p 98.4 1.4E-05 4.8E-10 73.8 17.7 130 126-260 245-374 (537)
60 3mv2_B Coatomer subunit epsilo 98.4 2.2E-05 7.5E-10 68.8 16.9 135 121-259 97-240 (310)
61 1ouv_A Conserved hypothetical 98.3 0.00025 8.5E-09 59.7 22.9 127 123-259 73-215 (273)
62 1na0_A Designed protein CTPR3; 98.3 3E-05 1E-09 56.3 14.3 99 159-260 9-107 (125)
63 2vyi_A SGTA protein; chaperone 98.3 4.2E-05 1.4E-09 56.0 15.2 117 126-246 14-130 (131)
64 3u4t_A TPR repeat-containing p 98.3 1.4E-05 4.8E-10 67.0 13.8 128 130-259 9-137 (272)
65 2vsy_A XCC0866; transferase, g 98.3 6.1E-05 2.1E-09 71.0 19.4 134 123-260 22-158 (568)
66 4i17_A Hypothetical protein; T 98.3 0.00014 4.8E-09 59.6 19.4 140 98-246 19-169 (228)
67 1ouv_A Conserved hypothetical 98.3 0.00016 5.6E-09 60.9 20.1 145 99-259 19-179 (273)
68 1p5q_A FKBP52, FK506-binding p 98.2 6.2E-05 2.1E-09 66.5 17.4 124 133-260 156-295 (336)
69 1qqe_A Vesicular transport pro 98.2 5.5E-05 1.9E-09 65.2 16.3 161 98-258 49-227 (292)
70 3qky_A Outer membrane assembly 98.2 9.4E-05 3.2E-09 62.1 17.1 156 99-261 28-226 (261)
71 2ond_A Cleavage stimulation fa 98.2 8.6E-05 2.9E-09 64.3 17.2 146 103-259 81-232 (308)
72 2h6f_A Protein farnesyltransfe 98.2 5E-05 1.7E-09 68.6 15.3 153 99-259 110-269 (382)
73 2lni_A Stress-induced-phosphop 98.1 7.7E-05 2.6E-09 55.0 13.8 117 124-244 16-132 (133)
74 1elr_A TPR2A-domain of HOP; HO 98.1 5.3E-05 1.8E-09 55.5 12.4 110 126-238 6-120 (131)
75 3u3w_A Transcriptional activat 98.1 0.00011 3.9E-09 63.0 16.3 130 129-258 80-224 (293)
76 2ooe_A Cleavage stimulation fa 98.1 0.00026 9E-09 66.0 19.5 134 125-261 357-494 (530)
77 2r5s_A Uncharacterized protein 98.1 6E-05 2E-09 59.6 12.8 133 123-259 39-173 (176)
78 3ro3_A PINS homolog, G-protein 98.1 5.5E-05 1.9E-09 57.4 11.8 134 127-260 12-159 (164)
79 1qqe_A Vesicular transport pro 98.1 5.6E-05 1.9E-09 65.1 13.1 130 131-260 44-188 (292)
80 3qky_A Outer membrane assembly 98.0 0.00038 1.3E-08 58.3 17.7 133 127-261 18-179 (261)
81 2e2e_A Formate-dependent nitri 98.0 9.1E-05 3.1E-09 58.3 12.9 99 123-224 43-144 (177)
82 2h6f_A Protein farnesyltransfe 98.0 0.00014 4.9E-09 65.6 15.6 128 123-256 165-299 (382)
83 4f3v_A ESX-1 secretion system 98.0 1.7E-05 5.9E-10 68.5 9.1 149 129-282 107-274 (282)
84 3gyz_A Chaperone protein IPGC; 98.0 0.00027 9.2E-09 55.1 15.2 96 161-259 38-133 (151)
85 4abn_A Tetratricopeptide repea 98.0 6.6E-05 2.2E-09 69.5 13.5 134 118-256 164-318 (474)
86 2lni_A Stress-induced-phosphop 98.0 0.00015 5.1E-09 53.3 13.1 100 157-259 14-113 (133)
87 4gco_A Protein STI-1; structur 98.0 0.00016 5.5E-09 54.2 13.2 88 134-224 23-110 (126)
88 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.0006 2.1E-08 56.0 17.8 159 98-261 16-215 (225)
89 3q49_B STIP1 homology and U bo 98.0 0.00032 1.1E-08 52.2 14.7 99 122-223 7-105 (137)
90 1elw_A TPR1-domain of HOP; HOP 98.0 0.00077 2.6E-08 48.0 16.2 97 125-224 5-101 (118)
91 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00032 1.1E-08 54.5 14.9 96 127-225 14-109 (164)
92 3u3w_A Transcriptional activat 98.0 0.00012 4.2E-09 62.8 13.2 131 129-259 120-266 (293)
93 4gco_A Protein STI-1; structur 98.0 0.00036 1.2E-08 52.3 14.3 97 160-259 14-110 (126)
94 3mv2_B Coatomer subunit epsilo 98.0 0.00027 9.2E-09 61.9 15.3 150 99-260 113-283 (310)
95 3gyz_A Chaperone protein IPGC; 98.0 0.00021 7E-09 55.8 13.3 94 132-230 44-137 (151)
96 1elw_A TPR1-domain of HOP; HOP 97.9 0.00029 9.8E-09 50.4 13.2 99 158-259 3-101 (118)
97 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00034 1.2E-08 59.9 15.8 128 130-257 121-264 (293)
98 1elr_A TPR2A-domain of HOP; HO 97.9 0.00027 9.2E-09 51.6 13.2 100 159-260 4-109 (131)
99 3q49_B STIP1 homology and U bo 97.9 0.00053 1.8E-08 51.0 15.0 100 157-259 7-106 (137)
100 2qfc_A PLCR protein; TPR, HTH, 97.9 0.00072 2.5E-08 57.9 17.8 134 126-259 77-225 (293)
101 3ro2_A PINS homolog, G-protein 97.9 8.1E-05 2.8E-09 63.4 11.5 136 125-260 184-333 (338)
102 3ulq_A Response regulator aspa 97.9 0.00019 6.4E-09 63.8 14.1 162 98-259 115-293 (383)
103 3gw4_A Uncharacterized protein 97.9 0.0001 3.6E-09 58.7 11.3 136 124-259 26-176 (203)
104 3sf4_A G-protein-signaling mod 97.9 0.00017 5.7E-09 63.7 13.6 135 125-259 188-336 (406)
105 2fbn_A 70 kDa peptidylprolyl i 97.9 0.00047 1.6E-08 55.3 15.2 121 134-258 48-185 (198)
106 2kck_A TPR repeat; tetratricop 97.9 0.00016 5.4E-09 51.4 11.1 96 162-259 9-106 (112)
107 2xcb_A PCRH, regulatory protei 97.9 0.00036 1.2E-08 53.0 13.6 90 132-224 26-115 (142)
108 2vyi_A SGTA protein; chaperone 97.9 0.00044 1.5E-08 50.3 13.7 100 158-260 11-110 (131)
109 2vgx_A Chaperone SYCD; alterna 97.9 0.00028 9.7E-09 54.4 13.1 98 124-224 21-118 (148)
110 2vgx_A Chaperone SYCD; alterna 97.9 0.00034 1.2E-08 53.9 13.6 101 158-261 20-120 (148)
111 3n71_A Histone lysine methyltr 97.9 6.3E-05 2.1E-09 70.2 10.8 128 133-260 318-465 (490)
112 2xcb_A PCRH, regulatory protei 97.9 0.00032 1.1E-08 53.3 13.2 99 159-260 18-116 (142)
113 2dba_A Smooth muscle cell asso 97.9 0.00042 1.5E-08 51.9 13.8 90 131-224 35-128 (148)
114 3upv_A Heat shock protein STI1 97.9 0.00045 1.5E-08 50.9 13.7 96 126-224 6-101 (126)
115 3upv_A Heat shock protein STI1 97.9 0.0013 4.3E-08 48.4 16.2 97 159-259 4-101 (126)
116 3qou_A Protein YBBN; thioredox 97.9 0.00024 8.3E-09 61.0 13.8 150 99-257 130-282 (287)
117 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00038 1.3E-08 54.1 13.7 100 158-260 10-109 (164)
118 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00074 2.5E-08 54.3 15.9 119 99-225 19-151 (213)
119 2kck_A TPR repeat; tetratricop 97.9 0.00023 8E-09 50.4 11.5 95 128-225 10-107 (112)
120 4ga2_A E3 SUMO-protein ligase 97.9 3.3E-05 1.1E-09 59.8 7.2 82 132-216 39-120 (150)
121 1hz4_A MALT regulatory protein 97.9 0.0017 5.7E-08 57.1 19.1 162 98-259 105-282 (373)
122 3gw4_A Uncharacterized protein 97.9 0.00016 5.5E-09 57.6 11.3 125 134-259 2-136 (203)
123 4a1s_A PINS, partner of inscut 97.8 0.0002 6.7E-09 63.8 12.7 137 125-261 224-374 (411)
124 2ifu_A Gamma-SNAP; membrane fu 97.8 0.00022 7.6E-09 61.8 12.4 171 86-257 30-222 (307)
125 3urz_A Uncharacterized protein 97.8 0.00067 2.3E-08 55.1 14.6 125 130-261 60-188 (208)
126 3q15_A PSP28, response regulat 97.8 0.00051 1.7E-08 61.0 14.8 162 99-260 114-291 (378)
127 3qou_A Protein YBBN; thioredox 97.8 0.00086 2.9E-08 57.5 15.7 131 124-260 117-249 (287)
128 2yhc_A BAMD, UPF0169 lipoprote 97.8 0.0015 5E-08 53.6 16.6 133 128-262 8-179 (225)
129 2vsy_A XCC0866; transferase, g 97.8 0.00036 1.2E-08 65.7 14.2 120 137-260 2-121 (568)
130 1wao_1 Serine/threonine protei 97.8 0.00011 3.7E-09 68.3 9.9 119 134-255 16-135 (477)
131 3urz_A Uncharacterized protein 97.7 0.0011 3.8E-08 53.8 14.9 108 133-246 13-138 (208)
132 3k9i_A BH0479 protein; putativ 97.7 4.4E-05 1.5E-09 56.2 5.7 87 136-224 2-90 (117)
133 2ifu_A Gamma-SNAP; membrane fu 97.7 0.00036 1.2E-08 60.4 12.3 150 99-253 89-255 (307)
134 3ro2_A PINS homolog, G-protein 97.7 0.00054 1.8E-08 58.2 13.2 124 133-258 14-171 (338)
135 2ooe_A Cleavage stimulation fa 97.7 0.0014 4.7E-08 61.0 17.0 132 123-260 320-455 (530)
136 4a1s_A PINS, partner of inscut 97.7 0.00023 7.9E-09 63.3 11.2 123 134-258 58-211 (411)
137 2xev_A YBGF; tetratricopeptide 97.7 0.0011 3.7E-08 48.7 13.2 91 132-224 10-105 (129)
138 2dba_A Smooth muscle cell asso 97.7 0.0013 4.5E-08 49.1 13.9 100 157-260 26-129 (148)
139 2pzi_A Probable serine/threoni 97.7 0.00028 9.6E-09 68.4 12.4 130 123-258 432-562 (681)
140 4gcn_A Protein STI-1; structur 97.7 0.00096 3.3E-08 49.8 12.6 88 133-221 17-109 (127)
141 4gcn_A Protein STI-1; structur 97.7 0.0011 3.7E-08 49.6 12.9 99 159-259 8-112 (127)
142 1a17_A Serine/threonine protei 97.7 0.0016 5.5E-08 49.7 14.2 99 159-260 13-111 (166)
143 4ga2_A E3 SUMO-protein ligase 97.7 0.0013 4.3E-08 50.7 13.4 119 134-258 7-128 (150)
144 1hxi_A PEX5, peroxisome target 97.7 0.00053 1.8E-08 50.9 10.8 87 134-223 27-113 (121)
145 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0013 4.4E-08 60.5 15.5 125 133-261 277-417 (457)
146 2e2e_A Formate-dependent nitri 97.6 0.0014 4.8E-08 51.2 13.7 124 134-261 20-146 (177)
147 3sf4_A G-protein-signaling mod 97.6 0.00084 2.9E-08 59.1 13.5 132 127-259 12-176 (406)
148 3ulq_A Response regulator aspa 97.6 0.00091 3.1E-08 59.3 13.8 159 99-260 197-369 (383)
149 2xev_A YBGF; tetratricopeptide 97.6 0.002 6.7E-08 47.2 13.6 95 165-261 8-107 (129)
150 1hxi_A PEX5, peroxisome target 97.6 0.0011 3.6E-08 49.2 11.7 94 162-259 20-114 (121)
151 3q15_A PSP28, response regulat 97.6 0.0035 1.2E-07 55.5 16.5 157 99-258 195-364 (378)
152 1ihg_A Cyclophilin 40; ppiase 97.5 0.0013 4.4E-08 58.9 13.0 114 134-251 233-362 (370)
153 2c2l_A CHIP, carboxy terminus 97.5 0.0028 9.5E-08 54.2 14.5 95 125-223 5-100 (281)
154 1hz4_A MALT regulatory protein 97.5 0.0017 5.7E-08 57.1 13.5 134 126-259 55-203 (373)
155 3k9i_A BH0479 protein; putativ 97.5 0.00039 1.3E-08 50.9 7.5 88 171-259 2-90 (117)
156 2c2l_A CHIP, carboxy terminus 97.4 0.004 1.4E-07 53.1 14.8 98 158-259 3-101 (281)
157 3rkv_A Putative peptidylprolyl 97.4 0.0044 1.5E-07 47.7 13.4 93 134-230 21-130 (162)
158 2r5s_A Uncharacterized protein 97.4 0.0014 4.9E-08 51.5 10.1 124 131-260 13-138 (176)
159 2l6j_A TPR repeat-containing p 97.3 0.00022 7.4E-09 51.0 4.7 65 158-224 3-67 (111)
160 3n71_A Histone lysine methyltr 97.3 0.0012 4E-08 61.6 10.4 126 99-224 322-464 (490)
161 1xi4_A Clathrin heavy chain; a 97.3 0.016 5.5E-07 60.0 18.7 115 123-256 1133-1247(1630)
162 3rjv_A Putative SEL1 repeat pr 97.3 0.018 6E-07 46.8 16.1 149 99-259 31-197 (212)
163 2hr2_A Hypothetical protein; a 97.2 0.0044 1.5E-07 48.7 11.2 104 134-237 21-149 (159)
164 2pzi_A Probable serine/threoni 97.2 0.0017 5.9E-08 62.8 10.6 120 135-259 402-529 (681)
165 3ro3_A PINS homolog, G-protein 97.2 0.0069 2.4E-07 45.3 11.9 99 125-223 50-157 (164)
166 2fbn_A 70 kDa peptidylprolyl i 97.2 0.011 3.9E-07 46.9 13.7 124 134-259 14-151 (198)
167 2if4_A ATFKBP42; FKBP-like, al 97.1 0.0016 5.4E-08 57.4 9.0 120 134-259 189-328 (338)
168 3rkv_A Putative peptidylprolyl 97.1 0.0073 2.5E-07 46.4 11.8 100 159-259 11-126 (162)
169 2xm6_A Protein corresponding t 97.1 0.17 5.7E-06 46.3 23.0 127 123-259 290-432 (490)
170 2xm6_A Protein corresponding t 97.1 0.076 2.6E-06 48.6 20.2 127 123-259 110-252 (490)
171 4e6h_A MRNA 3'-END-processing 97.0 0.018 6.3E-07 55.7 16.1 133 126-261 436-572 (679)
172 3qwp_A SET and MYND domain-con 97.0 0.0036 1.2E-07 57.3 10.6 92 130-221 293-397 (429)
173 1p5q_A FKBP52, FK506-binding p 97.0 0.011 3.9E-07 51.7 13.5 99 158-259 146-259 (336)
174 3qwp_A SET and MYND domain-con 97.0 0.0054 1.8E-07 56.1 11.5 97 163-259 291-400 (429)
175 1xi4_A Clathrin heavy chain; a 96.9 0.078 2.7E-06 55.1 20.1 59 117-184 1188-1246(1630)
176 3qww_A SET and MYND domain-con 96.9 0.0031 1.1E-07 57.7 9.1 87 172-258 311-410 (433)
177 3dra_A Protein farnesyltransfe 96.9 0.019 6.5E-07 50.0 13.6 125 134-261 154-289 (306)
178 2kat_A Uncharacterized protein 96.9 0.013 4.3E-07 42.2 10.7 80 142-224 3-82 (115)
179 2kat_A Uncharacterized protein 96.9 0.0095 3.3E-07 42.9 9.7 80 177-259 3-82 (115)
180 2l6j_A TPR repeat-containing p 96.8 0.0021 7E-08 45.6 5.9 93 125-220 5-103 (111)
181 4b4t_Q 26S proteasome regulato 96.8 0.022 7.7E-07 50.7 14.0 133 127-259 58-204 (434)
182 3qww_A SET and MYND domain-con 96.8 0.0036 1.2E-07 57.3 8.7 87 136-222 310-409 (433)
183 1na3_A Designed protein CTPR2; 96.8 0.028 9.6E-07 37.9 11.2 63 160-224 10-72 (91)
184 3ma5_A Tetratricopeptide repea 96.7 0.0088 3E-07 42.3 8.5 64 158-223 6-69 (100)
185 2hr2_A Hypothetical protein; a 96.7 0.043 1.5E-06 42.9 13.1 100 160-259 12-131 (159)
186 4g1t_A Interferon-induced prot 96.7 0.073 2.5E-06 47.8 16.5 134 122-259 245-401 (472)
187 4g1t_A Interferon-induced prot 96.7 0.065 2.2E-06 48.2 16.0 163 93-259 58-242 (472)
188 1na3_A Designed protein CTPR2; 96.6 0.049 1.7E-06 36.6 11.5 81 126-209 11-91 (91)
189 1wao_1 Serine/threonine protei 96.6 0.019 6.6E-07 52.9 11.9 89 168-259 15-103 (477)
190 4e6h_A MRNA 3'-END-processing 96.6 0.053 1.8E-06 52.4 15.2 154 100-260 357-534 (679)
191 3ma5_A Tetratricopeptide repea 96.5 0.018 6.3E-07 40.6 8.9 66 192-258 4-69 (100)
192 1ihg_A Cyclophilin 40; ppiase 96.5 0.032 1.1E-06 49.7 12.2 98 160-259 224-336 (370)
193 3rjv_A Putative SEL1 repeat pr 96.4 0.28 9.6E-06 39.4 18.4 129 123-259 17-158 (212)
194 4b4t_Q 26S proteasome regulato 96.3 0.088 3E-06 46.7 14.5 128 133-260 13-165 (434)
195 1kt0_A FKBP51, 51 kDa FK506-bi 96.3 0.062 2.1E-06 49.1 13.6 98 159-259 268-380 (457)
196 1klx_A Cysteine rich protein B 96.3 0.2 7E-06 37.5 14.4 110 138-259 9-126 (138)
197 4f3v_A ESX-1 secretion system 96.3 0.054 1.9E-06 46.5 12.0 123 99-229 115-240 (282)
198 3e4b_A ALGK; tetratricopeptide 95.9 0.31 1.1E-05 44.2 16.2 122 126-257 178-314 (452)
199 2uy1_A Cleavage stimulation fa 95.7 0.21 7.2E-06 46.2 14.3 125 126-260 288-414 (493)
200 2kc7_A BFR218_protein; tetratr 95.6 0.053 1.8E-06 37.4 7.7 54 134-188 10-64 (99)
201 1dce_A Protein (RAB geranylger 95.5 0.37 1.3E-05 45.4 15.3 115 140-258 89-220 (567)
202 2if4_A ATFKBP42; FKBP-like, al 95.5 0.083 2.9E-06 46.2 10.2 97 159-259 179-293 (338)
203 3dra_A Protein farnesyltransfe 95.3 0.94 3.2E-05 39.1 16.2 105 138-246 124-236 (306)
204 2kc7_A BFR218_protein; tetratr 95.2 0.074 2.5E-06 36.7 7.4 58 166-225 7-65 (99)
205 1zu2_A Mitochondrial import re 95.2 0.087 3E-06 41.1 8.1 113 134-257 12-145 (158)
206 3ly7_A Transcriptional activat 94.8 0.4 1.4E-05 42.6 12.4 135 121-259 191-339 (372)
207 3mkq_A Coatomer beta'-subunit; 94.6 0.37 1.3E-05 46.5 12.7 46 134-185 662-707 (814)
208 3q7a_A Farnesyltransferase alp 94.1 2.4 8.3E-05 37.3 15.9 121 134-258 98-236 (349)
209 1dce_A Protein (RAB geranylger 93.8 2.2 7.6E-05 40.0 15.9 116 139-259 44-173 (567)
210 3q7a_A Farnesyltransferase alp 93.6 2.5 8.7E-05 37.2 14.9 120 135-259 65-196 (349)
211 3dss_A Geranylgeranyl transfer 93.5 2.5 8.7E-05 36.9 14.7 122 134-260 118-268 (331)
212 3bee_A Putative YFRE protein; 93.4 0.87 3E-05 31.7 9.5 67 157-225 4-73 (93)
213 3e4b_A ALGK; tetratricopeptide 93.3 1 3.6E-05 40.7 12.5 128 126-259 143-280 (452)
214 1zu2_A Mitochondrial import re 93.1 0.27 9.2E-06 38.3 7.0 87 169-259 12-120 (158)
215 3dss_A Geranylgeranyl transfer 92.7 4.5 0.00015 35.3 15.1 116 140-259 90-222 (331)
216 2ff4_A Probable regulatory pro 92.7 0.7 2.4E-05 41.3 10.1 112 123-236 111-251 (388)
217 3mkq_A Coatomer beta'-subunit; 92.2 0.4 1.4E-05 46.2 8.4 85 122-222 679-763 (814)
218 1pc2_A Mitochondria fission pr 91.9 1.5 5.2E-05 33.7 9.8 84 139-224 13-100 (152)
219 3mkq_B Coatomer subunit alpha; 91.7 1.7 5.9E-05 34.4 10.0 122 99-257 18-142 (177)
220 1pc2_A Mitochondria fission pr 91.5 1.4 4.8E-05 34.0 9.2 72 122-196 30-106 (152)
221 1klx_A Cysteine rich protein B 91.4 3.3 0.00011 30.5 11.7 86 134-226 35-128 (138)
222 3mkq_B Coatomer subunit alpha; 91.0 4.8 0.00016 31.7 13.8 101 133-255 14-114 (177)
223 3u64_A Protein TP_0956; tetrat 90.8 2.8 9.6E-05 36.0 11.2 109 140-259 179-298 (301)
224 2v5f_A Prolyl 4-hydroxylase su 90.4 2.3 7.8E-05 29.8 9.0 63 161-223 7-74 (104)
225 2v5f_A Prolyl 4-hydroxylase su 90.1 2.2 7.6E-05 29.8 8.7 66 194-259 4-75 (104)
226 2uy1_A Cleavage stimulation fa 90.1 11 0.00037 34.5 15.6 30 124-153 213-242 (493)
227 3bee_A Putative YFRE protein; 89.7 3.4 0.00012 28.5 9.3 67 192-260 3-73 (93)
228 4gns_B Protein CSD3, chitin bi 88.0 7.7 0.00026 37.8 13.3 126 129-257 253-398 (754)
229 3ly7_A Transcriptional activat 86.6 5 0.00017 35.6 10.3 74 156-234 274-347 (372)
230 2ff4_A Probable regulatory pro 84.3 16 0.00056 32.2 12.8 106 158-264 111-243 (388)
231 1v54_E Cytochrome C oxidase po 83.2 6.3 0.00021 28.1 7.4 46 177-223 28-73 (109)
232 3u64_A Protein TP_0956; tetrat 82.5 5.4 0.00019 34.2 8.3 83 175-259 179-269 (301)
233 1nzn_A CGI-135 protein, fissio 82.4 10 0.00034 28.1 8.8 83 140-224 17-103 (126)
234 2p58_C Putative type III secre 80.7 11 0.00038 26.8 7.9 85 139-233 22-106 (116)
235 2ion_A PDCD4, programmed cell 79.7 18 0.00062 27.5 9.8 105 129-247 14-121 (152)
236 1nzn_A CGI-135 protein, fissio 79.2 14 0.00048 27.3 8.6 91 166-259 8-103 (126)
237 2uwj_G Type III export protein 78.7 11 0.00037 26.8 7.3 85 139-233 21-105 (115)
238 4b4t_R RPN7, 26S proteasome re 77.5 29 0.001 31.0 12.1 106 126-233 133-246 (429)
239 1wy6_A Hypothetical protein ST 76.8 22 0.00076 27.0 13.8 102 106-227 56-157 (172)
240 2y69_E Cytochrome C oxidase su 75.6 13 0.00044 28.0 7.4 45 178-223 72-116 (152)
241 2nsz_A Programmed cell death p 73.7 24 0.00083 25.9 11.2 105 128-246 11-118 (129)
242 4fhn_B Nucleoporin NUP120; pro 72.7 50 0.0017 33.6 13.5 114 133-249 851-990 (1139)
243 1v54_E Cytochrome C oxidase po 71.7 24 0.00081 25.2 7.6 42 110-151 31-72 (109)
244 4h7y_A Dual specificity protei 70.8 34 0.0011 26.3 11.6 107 121-230 10-129 (161)
245 1zbp_A Hypothetical protein VP 69.0 15 0.0005 31.0 7.2 118 131-259 4-129 (273)
246 2y69_E Cytochrome C oxidase su 65.9 33 0.0011 25.9 7.7 63 139-203 68-130 (152)
247 3eiq_C Programmed cell death p 60.1 88 0.003 27.3 11.3 116 128-259 221-339 (358)
248 2nsz_A Programmed cell death p 60.1 48 0.0016 24.3 8.6 70 161-232 9-80 (129)
249 3txn_A 26S proteasome regulato 59.4 68 0.0023 28.5 10.1 91 129-221 104-207 (394)
250 4b4t_P 26S proteasome regulato 58.7 1E+02 0.0035 27.6 14.0 95 128-223 141-246 (445)
251 2zu6_B Programmed cell death p 54.0 1E+02 0.0035 26.2 10.5 105 129-247 171-278 (307)
252 2ion_A PDCD4, programmed cell 53.9 49 0.0017 25.0 7.2 97 161-259 11-113 (152)
253 4h7y_A Dual specificity protei 53.2 75 0.0026 24.4 8.3 99 158-259 12-123 (161)
254 4gns_B Protein CSD3, chitin bi 53.0 28 0.00096 33.8 6.9 51 169-221 347-397 (754)
255 3ffl_A Anaphase-promoting comp 51.8 74 0.0025 24.6 7.9 56 131-186 27-90 (167)
256 3jxi_A Vanilloid receptor-rela 49.3 16 0.00056 29.4 4.2 120 130-254 8-161 (260)
257 2d2s_A Exocyst complex compone 49.0 1.1E+02 0.0037 25.0 12.3 100 132-235 26-140 (235)
258 3esl_A Checkpoint serine/threo 49.0 80 0.0027 25.2 7.9 57 173-229 93-149 (202)
259 1ug3_A EIF4GI, eukaryotic prot 48.3 28 0.00096 30.1 5.7 62 130-192 17-79 (339)
260 4b4t_R RPN7, 26S proteasome re 47.0 26 0.00088 31.4 5.4 104 160-263 132-241 (429)
261 3ffl_A Anaphase-promoting comp 46.9 92 0.0032 24.0 7.8 106 153-259 12-151 (167)
262 1k1a_A B-cell lymphoma 3-encod 46.8 22 0.00076 28.0 4.5 38 217-254 131-171 (241)
263 2rg8_A Programmed cell death p 46.1 94 0.0032 23.8 7.9 61 129-191 15-76 (165)
264 4a1g_A Mitotic checkpoint seri 43.7 96 0.0033 23.5 7.4 51 178-228 84-134 (152)
265 2xig_A Ferric uptake regulatio 43.6 96 0.0033 23.1 7.5 61 184-246 17-77 (150)
266 2yru_A Steroid receptor RNA ac 42.6 45 0.0015 24.2 5.1 41 147-187 49-89 (118)
267 2wvi_A Mitotic checkpoint seri 41.8 77 0.0026 24.4 6.6 52 178-229 79-130 (164)
268 1mzb_A Ferric uptake regulatio 40.5 1E+02 0.0036 22.4 7.4 46 200-245 22-68 (136)
269 3o48_A Mitochondria fission 1 40.4 38 0.0013 25.2 4.5 58 166-224 47-107 (134)
270 2fe3_A Peroxide operon regulat 40.3 1.1E+02 0.0037 22.6 7.9 61 184-246 12-72 (145)
271 2etb_A Transient receptor pote 40.1 17 0.00057 29.3 2.8 120 130-254 5-157 (256)
272 3eyy_A Putative iron uptake re 39.6 86 0.0029 23.2 6.6 60 184-246 9-68 (145)
273 3eiq_C Programmed cell death p 37.9 1.3E+02 0.0045 26.2 8.3 98 160-259 218-321 (358)
274 3l6a_A Eukaryotic translation 37.5 30 0.001 30.4 4.1 62 129-191 17-80 (364)
275 1zbp_A Hypothetical protein VP 37.1 1.3E+02 0.0044 25.2 7.7 95 120-224 26-129 (273)
276 3vu7_H DNA repair protein REV1 36.3 1E+02 0.0035 22.5 6.2 46 107-152 40-88 (124)
277 1yii_A Annexin A5, annexin V, 35.7 2E+02 0.007 24.4 11.1 127 126-261 75-217 (320)
278 2w57_A Ferric uptake regulatio 35.6 1.2E+02 0.0041 22.5 6.9 35 211-245 33-67 (150)
279 3o48_A Mitochondria fission 1 35.0 43 0.0015 24.9 4.0 60 133-196 49-113 (134)
280 2xdt_A Endoplasmic reticulum a 33.8 3.5E+02 0.012 26.6 11.9 91 128-228 684-784 (897)
281 3twr_A Tankyrase-2; ankyrin re 32.6 30 0.001 25.5 3.0 113 130-254 11-129 (165)
282 4aez_C MAD3, mitotic spindle c 32.2 95 0.0032 25.2 6.0 53 176-228 131-183 (223)
283 2pnn_A Transient receptor pote 32.1 33 0.0011 27.8 3.4 120 130-254 16-169 (273)
284 4fhn_B Nucleoporin NUP120; pro 31.8 4.2E+02 0.014 26.8 14.5 124 129-258 817-966 (1139)
285 3eu9_A Huntingtin-interacting 31.7 29 0.001 27.0 2.9 9 131-139 46-54 (240)
286 3esl_A Checkpoint serine/threo 31.6 2E+02 0.0067 22.9 9.4 56 137-192 92-148 (202)
287 4ets_A Ferric uptake regulatio 31.3 1.7E+02 0.0058 22.1 7.3 47 141-188 14-61 (162)
288 1w3w_A Annexin A8; coagulation 31.1 2.5E+02 0.0085 24.0 11.7 127 126-261 82-225 (327)
289 2rg8_A Programmed cell death p 30.8 31 0.0011 26.6 2.8 61 161-223 12-73 (165)
290 2o03_A Probable zinc uptake re 30.8 86 0.0029 22.7 5.2 46 201-246 16-61 (131)
291 2d2s_A Exocyst complex compone 30.4 1.8E+02 0.0062 23.5 7.6 92 163-257 22-118 (235)
292 4fjo_A DNA repair protein REV1 30.3 1.4E+02 0.0046 20.7 6.4 46 106-151 12-60 (97)
293 3mwm_A ZUR, putative metal upt 30.2 74 0.0025 23.4 4.8 47 200-246 18-64 (139)
294 2yru_A Steroid receptor RNA ac 29.6 91 0.0031 22.5 4.9 41 182-223 49-89 (118)
295 4aez_C MAD3, mitotic spindle c 29.0 2.3E+02 0.0078 22.9 7.7 53 140-192 130-183 (223)
296 2f6m_A Suppressor protein STP2 28.2 1.1E+02 0.0037 19.7 4.5 48 127-175 5-52 (65)
297 2zu6_B Programmed cell death p 27.3 1.7E+02 0.0058 24.8 7.1 97 160-258 167-269 (307)
298 3f3f_C Nucleoporin NUP85; stru 27.1 1.2E+02 0.004 28.4 6.4 69 178-249 500-568 (570)
299 3pvs_A Replication-associated 26.8 2.7E+02 0.0093 24.8 8.8 40 206-245 266-305 (447)
300 1k1a_A B-cell lymphoma 3-encod 26.1 75 0.0026 24.7 4.5 121 129-254 11-137 (241)
301 2ekk_A UBA domain from E3 ubiq 25.7 86 0.0029 18.3 3.6 31 182-218 13-43 (47)
302 2cos_A Serine/threonine protei 25.0 95 0.0032 19.1 3.6 36 180-221 11-48 (54)
303 2p58_C Putative type III secre 24.6 1.9E+02 0.0065 20.5 7.3 76 174-258 22-97 (116)
304 3zvk_A VAPC2, toxin of toxin-a 24.6 1.8E+02 0.0063 20.4 6.1 46 177-222 20-65 (134)
305 2uwj_G Type III export protein 24.5 1.9E+02 0.0065 20.5 6.5 77 174-259 21-97 (115)
306 3rjo_A Endoplasmic reticulum a 23.9 3.6E+02 0.012 23.5 12.2 92 127-228 200-301 (419)
307 3m6y_A 4-hydroxy-2-oxoglutarat 23.9 21 0.00071 29.6 0.6 84 140-223 170-269 (275)
308 3m0z_A Putative aldolase; MCSG 23.5 20 0.00069 29.3 0.4 84 140-223 147-246 (249)
309 2fu4_A Ferric uptake regulatio 23.3 1.5E+02 0.0053 19.0 6.9 61 184-246 7-68 (83)
310 3bu8_A Telomeric repeat-bindin 23.2 1.5E+02 0.0051 24.0 5.5 49 175-223 88-142 (235)
311 2b7e_A PRE-mRNA processing pro 23.1 40 0.0014 21.3 1.7 31 141-172 3-35 (59)
312 1wdy_A 2-5A-dependent ribonucl 23.1 56 0.0019 26.1 3.2 116 131-254 109-240 (285)
313 1wy6_A Hypothetical protein ST 22.9 2.5E+02 0.0086 21.3 18.1 62 197-259 93-154 (172)
314 2bn5_A PSI; nuclear protein, s 22.5 75 0.0026 17.3 2.4 23 130-152 8-30 (33)
315 2ijq_A Hypothetical protein; s 22.2 2.6E+02 0.009 21.3 7.4 54 134-187 42-103 (161)
316 3tnd_A TRNA(FMet)-specific end 22.1 1.9E+02 0.0066 20.2 5.7 29 194-222 36-64 (132)
317 3txn_A 26S proteasome regulato 21.8 4.1E+02 0.014 23.3 10.0 98 164-261 104-212 (394)
318 2rfa_A Transient receptor pote 21.7 52 0.0018 25.6 2.6 116 131-257 79-221 (232)
319 1bd8_A P19INK4D CDK4/6 inhibit 21.2 73 0.0025 22.9 3.2 113 129-255 4-123 (156)
320 1ixm_A SPO0B, protein (sporula 21.2 79 0.0027 24.9 3.6 72 174-257 14-85 (192)
321 1oai_A Nuclear RNA export fact 21.1 81 0.0028 19.7 2.9 23 208-230 33-56 (59)
322 1wdy_A 2-5A-dependent ribonucl 20.9 1.2E+02 0.0041 24.0 4.9 113 129-254 7-126 (285)
323 2hpi_A DNA polymerase III alph 20.8 5.9E+02 0.02 26.2 10.5 64 162-227 781-867 (1220)
324 3f6q_A Integrin-linked protein 20.4 94 0.0032 23.0 3.8 46 204-253 78-125 (179)
325 3v31_A Ankyrin repeat family A 20.3 1.3E+02 0.0046 21.7 4.7 116 131-259 40-161 (167)
326 1dm5_A Annexin XII E105K mutan 20.3 3.9E+02 0.013 22.5 8.8 125 126-261 73-215 (315)
327 1ixm_A SPO0B, protein (sporula 20.2 81 0.0028 24.8 3.4 32 229-260 31-62 (192)
328 3k1s_A PTS system, cellobiose- 20.2 1.4E+02 0.0049 21.2 4.4 71 134-225 32-109 (109)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=1.4e-30 Score=245.45 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=151.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQ---------WLRVIQVAKWMLSKGQGATMGTYDTLLLAF 169 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~---------~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~ 169 (284)
.|..++|.++|+.|. ..+..||++|||.+|.+|++.+. +++|.++|++|.+.|+.||.+|||+||.+|
T Consensus 39 ~G~~~~A~~lf~~M~---~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 39 KGDVLEALRLYDEAR---RNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp SCCHHHHHHHHHHHH---HHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---HcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 466677888888775 46889999999999999998765 789999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
++.|++++|.++|++|.+.|+.| |..|||+||.+||+.|++++|+++|++|.+.|+.||..||++||.+|++.|++|+|
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A 194 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKV 194 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHH
Confidence 99999999999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhcCCCc
Q 023326 250 KLVLKKYLSKWKYIH 264 (284)
Q Consensus 250 ~~l~~~m~~~~~~~~ 264 (284)
.++|++|.+......
T Consensus 195 ~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 195 YKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHHHTSSBC
T ss_pred HHHHHHHHHhCCCcC
Confidence 999999998755443
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3.4e-27 Score=222.31 Aligned_cols=137 Identities=15% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCC
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR---------ADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~---------~~~A~~l~~~m~~~~~~~~~ 194 (284)
...++.+|.+|++.|++++|+++|++|.+.|+.||.+|||+||.+|++.+. +++|.++|++|.+.|+.| |
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 345788899999999999999999999999999999999999999998765 788999999999999987 9
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
..|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+...
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999998743
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=8.2e-25 Score=214.98 Aligned_cols=127 Identities=10% Similarity=0.044 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLS---KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~---~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
..||+++|.+||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.| |++|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHH
Confidence 57899999999999999999999988764 5899999999999999999999999999999999999997 9999999
Q ss_pred HHHHHHhCCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 023326 201 MISLYDHHDMP-NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKL 251 (284)
Q Consensus 201 lI~~~~~~G~~-~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~ 251 (284)
||.++|+.|+. ++|.++|++|.+.|+.||.+||+++|+++.+.+-++.+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrk 257 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHH
Confidence 99999999985 7899999999999999999999999998887755544433
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=184.81 Aligned_cols=102 Identities=9% Similarity=0.051 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILH---TQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~---~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
..|||+||++||+.|++++|.++|++|.+ .|+.| |++|||+||.|||+.|++++|+++|++|++.|+.||.+|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 68999999999999999999999988864 46776 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHHHhHHhcC
Q 023326 236 IASAFQRVGQ-DDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a~~~~G~-~d~a~~l~~~m~~~~~ 261 (284)
||.+||+.|+ .++|.++|++|.++.-
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 9999999998 5789999999998854
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.51 E-value=1.7e-12 Score=122.76 Aligned_cols=155 Identities=11% Similarity=-0.076 Sum_probs=127.8
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|..+|+.+.. ....+..+|+.++.+|.+.|++++|+++|++|.+.+ ..+..+|+.+..+|.+.|++++|
T Consensus 386 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 386 VNKISEARRYFSKSST----MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred hccHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 4566666666665543 123457788999999999999999999999988763 34778899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD--EDTVRRIASAFQRVGQDDKQKLV 252 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd--~~ty~~ll~a~~~~G~~d~a~~l 252 (284)
.++|+++.+.. |.+..+|+.++..|.+.|++++|+++|++|.+. |..|+ ..+|..+..+|.+.|++++|.++
T Consensus 461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998764 447888999999999999999999999998776 77888 78999999999999999999999
Q ss_pred HHHhHHhc
Q 023326 253 LKKYLSKW 260 (284)
Q Consensus 253 ~~~m~~~~ 260 (284)
|+++.+..
T Consensus 539 ~~~~~~~~ 546 (597)
T 2xpi_A 539 LNQGLLLS 546 (597)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 99887653
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.43 E-value=1.6e-11 Score=116.09 Aligned_cols=156 Identities=10% Similarity=-0.042 Sum_probs=133.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|..+|+.+.. ....+..+|+.+..+|.+.|++++|+++|++|.+.. ..+..+|+.+...|.+.|++++|
T Consensus 420 ~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 494 (597)
T 2xpi_A 420 EGEHDQAISAYTTAAR----LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA 494 (597)
T ss_dssp HTCHHHHHHHHHHHHH----TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHH----hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence 4566666666665532 223478899999999999999999999999999764 34789999999999999999999
Q ss_pred HHHHHHHHHc----CCCCCC-HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 179 ESLWNMILHT----QTRSIS-KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 179 ~~l~~~m~~~----~~~~~~-~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.++|+++.+. +..|.+ ..+|+.+..+|.+.|++++|+++|+++.+.+ ..+..+|..+..+|.+.|++++|.++|
T Consensus 495 ~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 573 (597)
T 2xpi_A 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHL 573 (597)
T ss_dssp HHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 9999999887 556633 7899999999999999999999999998775 338899999999999999999999999
Q ss_pred HHhHHhc
Q 023326 254 KKYLSKW 260 (284)
Q Consensus 254 ~~m~~~~ 260 (284)
+++.+..
T Consensus 574 ~~~l~~~ 580 (597)
T 2xpi_A 574 HESLAIS 580 (597)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9998753
No 7
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=1.8e-08 Score=74.87 Aligned_cols=130 Identities=18% Similarity=0.149 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+...|.+.|++++|+.+|+++.+.. ..+...+..+...+...|++++|..+++++.+.+ |.+...|..+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 45566677999999999999999998764 3367888889999999999999999999998874 44778899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|++++|+++|+++.... ..+...+..+...|.+.|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999988753 235778888999999999999999999998764
No 8
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.05 E-value=1.1e-07 Score=79.47 Aligned_cols=155 Identities=8% Similarity=-0.062 Sum_probs=114.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...|+..... ...+...+..+...|.+.|++++|+++|+++.+.+..| +...+..+...+.+.|++++
T Consensus 84 ~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 159 (252)
T 2ho1_A 84 EMEPKLADEEYRKALAS----DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQ 159 (252)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHH
T ss_pred cCCHHHHHHHHHHHHHH----CcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHH
Confidence 34555555555544321 12256677777788888888888888888887744455 45677778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|..++++..+.. |.+...|..+...|.+.|++++|+++|++..+.. ..+...+..+...+...|+.++|.++++++.
T Consensus 160 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 236 (252)
T 2ho1_A 160 AKEYFEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLK 236 (252)
T ss_dssp HHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 888888888764 4467778888888888888888888888876542 2456677788888888888888888888887
Q ss_pred Hhc
Q 023326 258 SKW 260 (284)
Q Consensus 258 ~~~ 260 (284)
+..
T Consensus 237 ~~~ 239 (252)
T 2ho1_A 237 RLY 239 (252)
T ss_dssp HHC
T ss_pred HHC
Confidence 654
No 9
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.05 E-value=1.1e-07 Score=79.43 Aligned_cols=156 Identities=9% Similarity=-0.030 Sum_probs=130.4
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+..... ...+...+..+-..|.+.|++++|++.|++..+.. ..+...|..+...|...|++++
T Consensus 49 ~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 49 QRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 467778888887765432 23356778888888999999999999999998764 2367889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|.++++++.+.+..|.+...|..+...|.+.|++++|++.|++..+.. ..+...+..+...|...|++++|..++++..
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998844455577889999999999999999999999987754 2357889999999999999999999999987
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 203 ~~ 204 (252)
T 2ho1_A 203 QG 204 (252)
T ss_dssp TT
T ss_pred Hh
Confidence 64
No 10
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.02 E-value=3.6e-08 Score=88.11 Aligned_cols=132 Identities=13% Similarity=0.134 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+..++..+...|.+.|++++|+..|+++.+.. +-+..+|..+...+.+.|++++|..+++++++. .|.+..+|+.+.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLA 312 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHH
Confidence 57788889999999999999999999998863 225678999999999999999999999999987 356889999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+.|++++|+++|+++.+. .| +..++..+...|.+.|++++|.+.|+++.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999998764 44 5779999999999999999999999998864
No 11
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.96 E-value=2.3e-07 Score=75.45 Aligned_cols=134 Identities=10% Similarity=-0.110 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKR-GQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~-g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+...+..+...|... |++++|+..|+.+.+.+..|+ ...+..+...+.+.|++++|...++++.+.. |.+...|..
T Consensus 75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 152 (225)
T 2vq2_A 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKE 152 (225)
T ss_dssp CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHH
Confidence 445555555556666 666666666666655322332 3455555556666666666666666665542 334555666
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
+...|.+.|++++|.++|++..+..-..+...+..+...+...|+.+.+..+++.+.+
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666666666666655432213444555555555666666666666655544
No 12
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.96 E-value=7.7e-08 Score=83.65 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY---DTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty---~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.+...+..+...|.+.|++++|.+.|+.+.+.. |+...+ ...+..+...|++++|..+|+++++. .|.+...|
T Consensus 128 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~ 203 (291)
T 3mkr_A 128 DSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLL 203 (291)
T ss_dssp CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHH
Confidence 345555555555556666666666665555542 332111 11222222335556666666655554 23455555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHH-HHHHHHHhH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDK-QKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~-a~~l~~~m~ 257 (284)
+.+...|.+.|++++|++.|++..+. .| |..++..++..+...|+.++ +.++++++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 65666666666666666666554443 22 44455555555555555543 345555544
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=98.89 E-value=5.8e-07 Score=73.01 Aligned_cols=157 Identities=11% Similarity=-0.084 Sum_probs=128.2
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-HRAD 176 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-g~~~ 176 (284)
..|..++|...|+..... ...+...+..+...|...|++++|+..|++..+.. ..+..++..+...+... |+++
T Consensus 20 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 20 RGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHH
Confidence 356666777766655321 22346678888888999999999999999998763 33678899999999999 9999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
+|..+++++.+.+..|.+...|..+...|...|++++|++.|+++.+.. .-+...+..+...|...|++++|.+++++.
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999843445457889999999999999999999999987753 225778999999999999999999999998
Q ss_pred HHhc
Q 023326 257 LSKW 260 (284)
Q Consensus 257 ~~~~ 260 (284)
.+..
T Consensus 174 ~~~~ 177 (225)
T 2vq2_A 174 QSRV 177 (225)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7654
No 14
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=2.3e-07 Score=82.81 Aligned_cols=151 Identities=13% Similarity=0.031 Sum_probs=100.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...++.... ....+..+|..+-..|.+.|++++|+..|+++.+. .| +..+|..+..++.+.|++++
T Consensus 46 ~~~~~~a~~~~~~a~~----~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 119 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIK----QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEG 119 (388)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSH
T ss_pred cCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHH
Confidence 3444455444433321 23345667777777777888888888888777764 34 34567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
|...|+++++.. |.+...+..+-..|...|++++|+++|+++.+. .| +..+|..+...|...|++++|...|+++
T Consensus 120 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 120 AVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777653 445566677777777777777777777777654 33 4567777777777777777777777776
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 196 l~~ 198 (388)
T 1w3b_A 196 VTL 198 (388)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
No 15
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.88 E-value=3.7e-07 Score=71.66 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+...|.+.|++++|...|+...+.. +.+...+..+...+...|++++|.+++++..+.. |.+...|..+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 117 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLG 117 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHH
Confidence 56777788888999999999999999988763 3467888999999999999999999999998874 45788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...|++++|+++|++..+.. ..+...+..+...|...|++++|.+.+++..+.
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999987764 336778999999999999999999999988754
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.86 E-value=1.7e-07 Score=84.92 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHc
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTL------------LLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~L------------l~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
.+..++..+...|.+.|++++|+..|+++.+. .|+ ...+..+ ...|.+.|++++|..+|+++++.
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34666777777777777777777777777654 333 3334333 56677777777777777777764
Q ss_pred CCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 189 QTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 189 ~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
. |.+ ...|..+...|.+.|++++|++.++++.+. .| +...|..+..+|...|++++|.+.+++..+.
T Consensus 287 ~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 287 E--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp C--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3 323 335777777777777777777777776654 34 5677777777777788888887777777654
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.85 E-value=7.2e-07 Score=73.56 Aligned_cols=155 Identities=11% Similarity=0.008 Sum_probs=128.3
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+..... ...+...+..+...|.+.|++++|++.|++..+.. ..+...+..+...+.+.|++++
T Consensus 69 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 143 (243)
T 2q7f_A 69 SVNELERALAFYDKALEL----DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKL 143 (243)
T ss_dssp HTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHH
T ss_pred HcCCHHHHHHHHHHHHHc----CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHH
Confidence 356667777777655432 22367788888888999999999999999998764 3467788999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|..++++..+.. |.+...|..+...|.+.|++++|++.|++..+.. ..+..++..+...|...|++++|.+.+++..
T Consensus 144 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 144 ALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999998864 4478889999999999999999999999987653 2357789999999999999999999999987
Q ss_pred Hhc
Q 023326 258 SKW 260 (284)
Q Consensus 258 ~~~ 260 (284)
+..
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 653
No 18
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.85 E-value=3e-07 Score=83.30 Aligned_cols=152 Identities=12% Similarity=0.059 Sum_probs=120.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHH------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-M---GTYDTLLLA------ 168 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~---~ty~~Ll~~------ 168 (284)
.|..++|...|+.+... ..-+...+..+...|.+.|++++|+..|+++.+. .|+ . ..+..+...
T Consensus 73 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 146 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRL 146 (450)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHH
Confidence 34555555555544321 2235778888889999999999999999999875 344 3 677777555
Q ss_pred ------HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 169 ------FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 169 ------~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
+.+.|++++|..+++++.+.. |.+..+|..+...|.+.|++++|+++|+++.+.. ..+..+|..+...|..
T Consensus 147 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 147 RSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQ 223 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 888999999999999998763 5588889999999999999999999999987652 2367899999999999
Q ss_pred cCCHHHHHHHHHHhHHh
Q 023326 243 VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~ 259 (284)
.|++++|.+.|+++.+.
T Consensus 224 ~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKL 240 (450)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999999865
No 19
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.80 E-value=4e-07 Score=79.07 Aligned_cols=161 Identities=14% Similarity=0.074 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023326 90 KALNLVRIVSELPNEKHAVYGALDKWTAWETEFPLI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA 168 (284)
Q Consensus 90 ~a~~l~~~~~~~~~~a~~vf~~l~~~~~~~~~p~~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~ 168 (284)
.+..++-.......+.+...+.+..+......|+-. .+..+=..|.+.|++++|++.|+. ..+...+..+...
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 344433333323333333444444433333346444 444445779999999999999987 4678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHH--HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRL--FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~t--yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
+.+.|++++|.+.++.+.+.. |.+..+ ....+..+...|++++|+++|+++.+. ...+...++.+..++.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCH
Confidence 999999999999999999874 434321 233445555679999999999999887 345788999999999999999
Q ss_pred HHHHHHHHHhHHh
Q 023326 247 DKQKLVLKKYLSK 259 (284)
Q Consensus 247 d~a~~l~~~m~~~ 259 (284)
++|.+.|++..+.
T Consensus 217 ~eA~~~l~~al~~ 229 (291)
T 3mkr_A 217 EAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 20
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.79 E-value=4.9e-07 Score=75.05 Aligned_cols=157 Identities=10% Similarity=-0.084 Sum_probs=117.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSKG-------------------- 154 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-------------------- 154 (284)
.+..++|...|+..-....- ..++ ...+..+-..|.+.|++++|+..|+...+..
T Consensus 51 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 51 KGEYETAISTLNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE 129 (258)
T ss_dssp TTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence 45556666666554432221 1122 5777788888889999999999999888742
Q ss_pred ----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 155 ----QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 155 ----~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
..| +...|..+-..+...|++++|...+++.++.. |.+..+|..+...|.+.|++++|++.|++..+.. ..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 206 (258)
T 3uq3_A 130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF 206 (258)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence 223 34577778888888999999999999888764 4477888889999999999999999999887653 224
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 230 EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 230 ~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|..+...|.+.|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 678888888899999999999998887654
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.76 E-value=1.8e-06 Score=71.32 Aligned_cols=132 Identities=15% Similarity=0.047 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCC
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-----------HRADEAESLWNMILHTQTR 191 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-----------g~~~~A~~l~~~m~~~~~~ 191 (284)
+...+..+-..+.+.|++++|+..|++..+.. +-+...+..+-..+.+. |++++|...+++.++. .
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~ 114 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--N 114 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--C
Confidence 34444455555777777777777777766542 12455666666666666 7777777777777664 3
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|.+...|..+-..|...|++++|++.|++..+.. .+...+..+-..|...|++++|...|++..+.
T Consensus 115 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4466667777777777777777777777766665 56667777777777777777777777766654
No 22
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.75 E-value=2.9e-07 Score=77.29 Aligned_cols=163 Identities=12% Similarity=0.093 Sum_probs=123.0
Q ss_pred HhcCCchHHHHHHHHHHHHHcc---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWE---TE-FPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLL 166 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~---~~-p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll 166 (284)
..+..++|...|.......... .. ....++..+-..|...|++++|+..|++..+. ...| ...+|..+-
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 134 (283)
T 3edt_B 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA 134 (283)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3577777877776554432211 11 23456777888899999999999999998764 2123 367888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC---------------
Q 023326 167 LAFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--------------- 225 (284)
Q Consensus 167 ~~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--------------- 225 (284)
..|...|++++|..++++.++. ...|....+|..+...|.+.|++++|+++|++..+..
T Consensus 135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~ 214 (283)
T 3edt_B 135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPI 214 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 9999999999999999998876 2233346778999999999999999999999876530
Q ss_pred --------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 226 --------------------------------VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 226 --------------------------------~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..| +..++..+...|...|++++|.+++++..+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 215 WMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 113 33478888899999999999999999877543
No 23
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=1.8e-06 Score=71.53 Aligned_cols=126 Identities=11% Similarity=0.043 Sum_probs=106.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------------------
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG--QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ------------------ 189 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g--~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~------------------ 189 (284)
|.+.|++++|+..|+...+.. ..|+ ..+|..+-..+.+.|++++|...+++..+..
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKK 127 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHH
Confidence 889999999999999987643 2233 5889999999999999999999999998743
Q ss_pred ------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 190 ------TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 190 ------~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|.+...|..+...|...|++++|++.|++..+.. ..+...|..+...|...|++++|.+.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 128 AEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 344467789999999999999999999999987753 2267889999999999999999999999987654
No 24
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.73 E-value=3.9e-07 Score=76.51 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------C
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQ------T 190 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~------~ 190 (284)
...+..+-..|...|++++|+..|++..+. +-.| ...+|..+-..|...|++++|..++.+.++.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445666667799999999999999998765 3233 35688999999999999999999999887652 1
Q ss_pred CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 191 RSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 191 ~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|....+|..+...|...|++++|+++|++..+. +-.| +..++..+...|...|++++|.+++++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2335677999999999999999999999998765 2234 3558888999999999999999999988764
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.73 E-value=1.9e-06 Score=76.04 Aligned_cols=154 Identities=12% Similarity=0.045 Sum_probs=118.5
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ----------------------- 155 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~----------------------- 155 (284)
.|..++|...|+..-.. ..-+...+..+...|.+.|++++|+..|+++.+..-
T Consensus 112 ~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~ 187 (365)
T 4eqf_A 112 NENEQAAIVALQRCLEL----QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSP 187 (365)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred CCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHH
Confidence 46666777777655332 233578899999999999999999999999886420
Q ss_pred -------------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 156 -------------------GA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 156 -------------------~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
.| +..+|..+...|.+.|++++|..++++.++.. |.+..+|+.+...|.+.|++++
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 02 56778888888888888888888888888763 4577788888888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 214 IIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 214 A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|++.|++..+. .| +...|..+...|.+.|++++|.+.|++..+..
T Consensus 266 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 266 AVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888887765 34 46778888888888888888888888877543
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.72 E-value=1.4e-06 Score=71.81 Aligned_cols=154 Identities=11% Similarity=0.054 Sum_probs=122.2
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|+.... ....+...+..+-..|.+.|++++|+..|++..+.. ..+...+..+...+...|++++|
T Consensus 36 ~~~~~~A~~~~~~~l~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 110 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIE----ENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEA 110 (243)
T ss_dssp ------CCTTHHHHHT----TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhCHHHHHHHHHHHHH----hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHH
Confidence 3444555555544421 222356777778888999999999999999988763 33678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.++++++.+.. |.+...|..+...|.+.|++++|++++++..+.. ..+...+..+...|...|++++|.+.+++..+
T Consensus 111 ~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 111 KDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999874 4478889999999999999999999999987653 23677889999999999999999999999876
Q ss_pred hc
Q 023326 259 KW 260 (284)
Q Consensus 259 ~~ 260 (284)
..
T Consensus 188 ~~ 189 (243)
T 2q7f_A 188 QD 189 (243)
T ss_dssp HC
T ss_pred hC
Confidence 53
No 27
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.72 E-value=7.6e-07 Score=69.79 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.|..+-..+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++++.+.. |.+...|..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 34455566899999999999999887542 3467889999999999999999999999998873 45788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|++++|+++|++..... ..+...+..+...|...|++++|.+++++..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Confidence 99999999999999987663 3467788899999999999999999999988664
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.72 E-value=3.9e-07 Score=78.48 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|+..|++..+.. +.+..+|..+...+.+.|++++|..++++.++.. |.+..+|..+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--PGYVRVMYNMA 247 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHH
Confidence 67888888899999999999999999998763 3357889999999999999999999999998864 55788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-----------DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-----------d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..|.+.|++++|++.|++..+..-.. +...|..+..+|.+.|+.++|..++++..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999987653221 46789999999999999999999986543
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=98.71 E-value=5.3e-07 Score=79.60 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|+..|++..+.. +.+..+|+.+...|.+.|++++|...|++.++. .|.+..+|..+.
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 288 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLG 288 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHH
Confidence 58889999999999999999999999998763 346889999999999999999999999999986 455788999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHC
Q 023326 203 SLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..|.+.|++++|++.|++..+.
T Consensus 289 ~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 289 ISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998654
No 30
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.68 E-value=5.7e-06 Score=72.58 Aligned_cols=154 Identities=8% Similarity=-0.011 Sum_probs=117.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------------------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ----------------------- 155 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~----------------------- 155 (284)
.|..++|...|+..... ...+...+..+...|...|++++|+..|+.+.+..-
T Consensus 111 ~g~~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (368)
T 1fch_A 111 NEQELLAISALRRCLEL----KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKR 186 (368)
T ss_dssp TTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------C
T ss_pred CcCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHH
Confidence 35555566555544321 223566777777777777887777777777665321
Q ss_pred ------------------------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC
Q 023326 156 ------------------------GA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH 208 (284)
Q Consensus 156 ------------------------~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~ 208 (284)
.| +..++..+...+.+.|++++|..++++.++.. |.+..+|+.+...|.+.
T Consensus 187 ~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~ 264 (368)
T 1fch_A 187 ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANG 264 (368)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHc
Confidence 12 47888889999999999999999999998863 55788899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..+.. ..+...+..+...|.+.|++++|...|++..+.
T Consensus 265 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 265 NQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999987652 235778899999999999999999999988754
No 31
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.68 E-value=3.7e-07 Score=78.03 Aligned_cols=161 Identities=10% Similarity=0.112 Sum_probs=119.8
Q ss_pred hcCCchHHHHHHHHHHHH-Hc--cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWT-AW--ET-EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~-~~--~~-~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~ 167 (284)
.+..++|...|+..-... .. .. ......+..+-..|...|++++|+..|++..+. +-.| ....+..+-.
T Consensus 82 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 161 (311)
T 3nf1_A 82 QNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLAL 161 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 466666766665544322 11 11 123556777888899999999999999998764 3333 3567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC----------------
Q 023326 168 AFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG---------------- 225 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g---------------- 225 (284)
.+...|++++|..++++..+. +..+....+|..+...|.+.|++++|+++|++..+..
T Consensus 162 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 241 (311)
T 3nf1_A 162 LCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIW 241 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHH
Confidence 999999999999999998775 2233345678999999999999999999999877521
Q ss_pred -------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 226 -------------------------------VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 226 -------------------------------~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..| +..++..+...|.+.|++++|.++|++..+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 123 3457888889999999999999999887653
No 32
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.67 E-value=1.3e-05 Score=63.54 Aligned_cols=154 Identities=15% Similarity=0.052 Sum_probs=124.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|...|+..-+. ..-++..+..+-..|.+.|++++|+..+........ -+...+..+-..+...++++.
T Consensus 17 ~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHcCCHHH
Confidence 457777777777654321 223566777778889999999999999999887632 256677777788899999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|...+.+..+.. |.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|.+.|++++|.+.|++..
T Consensus 92 a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 168 (184)
T 3vtx_A 92 AIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999988864 5588889999999999999999999999987653 2266789999999999999999999999876
Q ss_pred Hh
Q 023326 258 SK 259 (284)
Q Consensus 258 ~~ 259 (284)
+.
T Consensus 169 ~~ 170 (184)
T 3vtx_A 169 EK 170 (184)
T ss_dssp HT
T ss_pred hC
Confidence 53
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=98.67 E-value=6.8e-06 Score=72.12 Aligned_cols=156 Identities=10% Similarity=0.038 Sum_probs=122.3
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..|..++|...|+.... ....+...+..+-..|.+.|++++|+..|++..+.. +.+..++..+...+...|++++
T Consensus 76 ~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 76 QEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 35666667666665532 123356778888888999999999999999998764 3478899999999999999999
Q ss_pred HHHHHHHHHHcCCC-----------------------------------------------CC--CHHHHHHHHHHHHhC
Q 023326 178 AESLWNMILHTQTR-----------------------------------------------SI--SKRLFSRMISLYDHH 208 (284)
Q Consensus 178 A~~l~~~m~~~~~~-----------------------------------------------~~--~~~tyn~lI~~~~~~ 208 (284)
|...++++.+..-. |. +..+|..+...|.+.
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 99998887664321 22 467788888999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..... ..+...|..+...|...|++++|...+++..+.
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999877652 225678888889999999999999999888765
No 34
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.66 E-value=7.6e-07 Score=76.02 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=121.3
Q ss_pred hcCCchHHHHHHHHHHH-HHcc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKW-TAWE---TEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSK------GQGA-TMGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~---~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~------g~~p-~~~ty~~Ll~ 167 (284)
.|..++|...|+..... .... .......+..+-..|...|++++|+..|++..+. +-.| ...+|..+-.
T Consensus 40 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 119 (311)
T 3nf1_A 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAV 119 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 45555666555544332 1111 1123455667777799999999999999998764 3223 4578889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc------CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCC-HHHHH
Q 023326 168 AFDKDHRADEAESLWNMILHT------QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRPD-EDTVR 234 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~------~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~Pd-~~ty~ 234 (284)
.|...|++++|..++++.++. +..+.....|..+...|...|++++|+++|++..+. +..|+ ..++.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 199 (311)
T 3nf1_A 120 LYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKN 199 (311)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999998876 223335667899999999999999999999998764 33443 44788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+...|...|++++|.+++++..+.
T Consensus 200 ~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 200 NLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999998864
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.65 E-value=1.4e-06 Score=73.11 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..|...|++++|+..|++..+.. +.+..+|..+-..+...|++++|...+++.++.. |.+..+|..+...|
T Consensus 45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 45 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHH
Confidence 34444444777777777777777766542 2246667777777777777777777777776653 33556677777777
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|++.|+++.+. .|+...+..++..+...|++++|...+++....
T Consensus 122 ~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777777777777776653 344444444444555667777777777655544
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.64 E-value=4e-06 Score=72.13 Aligned_cols=135 Identities=8% Similarity=-0.099 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|...|++++|+..|++..+..- .+...+..+-..+...|++++|..++++..+.. |.+..+|..+.
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~ 200 (330)
T 3hym_B 124 YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVG 200 (330)
T ss_dssp CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 456677777778888888888888888776532 234566667788888888888888888887753 45777888888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELG--------VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g--------~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|++.|++..+.. ...+...|..+...|...|++++|...+++..+..
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 88888888888888888876531 12345678888888888888888888888877653
No 37
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.63 E-value=1.4e-05 Score=68.49 Aligned_cols=100 Identities=9% Similarity=0.128 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+..++..+...+.+.|++++|..++++..+.. |.+..+|..+...|...|++++|++.|++..+.. ..+...+..+.
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 56788888888999999999999999998864 4578889999999999999999999999987653 23577888999
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.+++..+..
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999887654
No 38
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.63 E-value=2.6e-06 Score=73.29 Aligned_cols=135 Identities=8% Similarity=-0.098 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------CCCH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-------SISK 195 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-------~~~~ 195 (284)
+...+..+-..|...|++++|+..|++..+.. +.+...+..+...+.+.|++++|..++++..+..-. +...
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 34566678888999999999999999998763 346789999999999999999999999999875311 3356
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|..+...|.+.|++++|++.|++..+..- -+...+..+...|.+.|++++|.+.+++..+.
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 7899999999999999999999999877632 26678899999999999999999999987654
No 39
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.58 E-value=9.4e-06 Score=59.67 Aligned_cols=120 Identities=17% Similarity=0.075 Sum_probs=98.0
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
..+..++|...|+.+... ...+...+..+...+...|++++|..+|+++.+.+ ..+...+..+...+...|++++
T Consensus 13 ~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 87 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDE 87 (136)
T ss_dssp HHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhcCHHH
Confidence 346666777777655432 22356777888888999999999999999998764 3467788899999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
|..+++++.+.. |.+..+|..+...|.+.|++++|.+.|+++.+.
T Consensus 88 A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 88 AIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999998864 447788999999999999999999999998754
No 40
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.54 E-value=1e-05 Score=65.50 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=106.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
-..+.+.|++++|+..|++. +.|+...|..+-..+.+.|++++|...+++.++.. |.+...|..+-..|...|+
T Consensus 13 g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHccc
Confidence 33488999999999999876 46788999999999999999999999999998874 5588889999999999999
Q ss_pred hhHHHHHHHHHHHCC--------------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 211 PNKIIEVFADMEELG--------------VRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g--------------~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+++|++.|++..+.. ..|+ ...+..+-..|.+.|++++|.+.|++..+..
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999988753 2222 3578888899999999999999999887654
No 41
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.53 E-value=2.6e-08 Score=91.38 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|+.+ ..|..|+.
T Consensus 94 ~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~ 156 (449)
T 1b89_A 94 SYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAS 156 (449)
T ss_dssp ---------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHH
T ss_pred chhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHH
Confidence 3444445555555555555554443 245556666666666666666666666644 13788888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.+++.|++++|++.++++ -+..||..++.+|...|+++.|....
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 888888888888888887 27889999999999999999885543
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.53 E-value=1.9e-05 Score=62.47 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=112.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..+=..|.+.|++++|+..|++.++.. +-+...|..+-..|.+.|++++|...+....... |.+...+..+-
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHH
Confidence 34556666666999999999999999988763 2267889999999999999999999999998864 44778889999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..+...++++.|.+.+.+..... .-+...+..+-..|.+.|++++|.+.|++..+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~ 136 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh
Confidence 99999999999999999877653 225678888889999999999999999988765
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.52 E-value=6e-06 Score=68.07 Aligned_cols=133 Identities=13% Similarity=0.027 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..+.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|...+++.++. .|.+...|..+-
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 33455555566999999999999999988652 236788889999999999999999999999986 466888899999
Q ss_pred HHHHhC-----------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHH-----------DMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~-----------G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|.+. |++++|++.|++..+. .| +...+..+-..|...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 999999 9999999999998765 45 56688888899999999999999999987653
No 44
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.51 E-value=1.1e-07 Score=87.30 Aligned_cols=122 Identities=9% Similarity=-0.056 Sum_probs=85.2
Q ss_pred HHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC
Q 023326 115 WTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 115 ~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
.......|+..+++.+-..|...|++++|...|..+ ..|..|..++.+.|++++|.+.+..+ . +
T Consensus 113 ~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~-~ 176 (449)
T 1b89_A 113 LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N-S 176 (449)
T ss_dssp HTTTTTCC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------T-C
T ss_pred HHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------C-C
Confidence 344556788889999999999999999999999977 37899999999999999999999887 2 7
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
..+|..++.+|+..|+++.|......+ .+.||. ...++..|.+.|.+++|..+++.-.
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L---~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHI---VVHADE--LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTT---TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHH---HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 788999999999999999996655442 234444 5578889999999999999887764
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=1.3e-05 Score=58.20 Aligned_cols=114 Identities=17% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+++|+++.+.. ..+..++..+...+.+.|++++|..+++++.+.. |.+..+|..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence 3455566667889999999999999988753 3357788888888999999999999999988764 447788889999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQ 241 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~ 241 (284)
.|...|++++|++.|+++.+..- -+...+..+-..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 99999999999999998876531 13334444444433
No 46
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.51 E-value=1.4e-05 Score=65.63 Aligned_cols=131 Identities=10% Similarity=0.011 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..+...=..+.+.|++++|+..|+...+..-.++...+..+-..+.+.|++++|...+++.++. .|.+...|..+-..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444444558888999999999998887654467777777888888899999999999988875 35577788888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCC-CH-------HHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRP-DE-------DTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~P-d~-------~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|++.|++..+.. | +. ..|..+-..+...|++++|.+.|++..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999999998876642 3 23 45666777788889999999998887654
No 47
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.50 E-value=1.6e-05 Score=69.06 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=118.4
Q ss_pred cCCchHHHHHHHHHHHHHccCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHH
Q 023326 100 ELPNEKHAVYGALDKWTAWETEFP-LI-AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFD-KDHRAD 176 (284)
Q Consensus 100 ~~~~~a~~vf~~l~~~~~~~~~p~-~~-~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~-~~g~~~ 176 (284)
|..++|+.+|+..- ...|+ .. .|..+...+.+.|++++|..+|++..+..- .+...|........ ..|+.+
T Consensus 113 ~~~~~A~~~~~~al-----~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 113 MKYEKVHSIYNRLL-----AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TCHHHHHHHHHHHH-----TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHH
T ss_pred CCHHHHHHHHHHHH-----hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHH
Confidence 44445555554442 23343 33 788888889999999999999999987642 33445544333322 369999
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-VRP--DEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-~~P--d~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
+|..+|+..++. .|.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..++
T Consensus 187 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 187 VAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999876 35588889999999999999999999999998874 455 4668888999999999999999999
Q ss_pred HHhHHhcC
Q 023326 254 KKYLSKWK 261 (284)
Q Consensus 254 ~~m~~~~~ 261 (284)
+++.+.+.
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99987765
No 48
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.50 E-value=3.7e-05 Score=66.60 Aligned_cols=153 Identities=12% Similarity=0.045 Sum_probs=122.3
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH---------
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA----TMGTYDTL--------- 165 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p----~~~ty~~L--------- 165 (284)
.|..++|...|+..-.. ..-+...+..+-..|.+.|++++|+..|++..+. .| +...+..+
T Consensus 50 ~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 50 MGKSKAALPDLTKVIAL----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHH
Confidence 46666666666554321 2225677888888899999999999999999875 45 33444444
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 023326 166 ---LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 166 ---l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~ 242 (284)
...+...|++++|..+++++.+.. |.+...|..+...|...|++++|++.|++..+.. ..+...+..+...|..
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 477889999999999999998864 4578889999999999999999999999988763 3367789999999999
Q ss_pred cCCHHHHHHHHHHhHHhc
Q 023326 243 VGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~ 260 (284)
.|++++|...+++..+..
T Consensus 201 ~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 999999999999887653
No 49
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.50 E-value=6e-06 Score=75.67 Aligned_cols=88 Identities=10% Similarity=0.059 Sum_probs=76.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|+++.+.. ||..+|..+..++.+.|++++|...++++++.+ |.+..+|..+...|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 16 FFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHH
Confidence 888899999999999988875 788899999999999999999999999988864 5578889999999999999999
Q ss_pred HHHHHHHHHHCC
Q 023326 214 IIEVFADMEELG 225 (284)
Q Consensus 214 A~~l~~~M~~~g 225 (284)
|+..|+++...+
T Consensus 92 A~~~~~~~~~~~ 103 (514)
T 2gw1_A 92 AMFDLSVLSLNG 103 (514)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHhcC
Confidence 999998886654
No 50
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.47 E-value=2.2e-06 Score=78.58 Aligned_cols=134 Identities=8% Similarity=-0.073 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
|+...+..+...|.+.|++++|+..|+...+.. +.+..+|..+...+...|++++|...+++..+.. |.+...|..+
T Consensus 268 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 344 (514)
T 2gw1_A 268 PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPYIQL 344 (514)
T ss_dssp CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHH
Confidence 335666666666777777777777777766542 2245566677777777777777777777776643 3355567777
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++++|+++|+++.+.. .-+...+..+...|...|++++|.+.++++.+.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777777777777777766542 124456667777777777777777777776643
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.46 E-value=2.4e-06 Score=79.30 Aligned_cols=152 Identities=9% Similarity=0.015 Sum_probs=125.2
Q ss_pred cCC-chHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 023326 100 ELP-NEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD------ 172 (284)
Q Consensus 100 ~~~-~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~------ 172 (284)
+.. ++|...|+..-.. ..-+...|..+-..|.+.|++++|++.|+...+. .|+...+..+-..+...
T Consensus 116 g~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~ 189 (474)
T 4abn_A 116 PDYSPEAEVLLSKAVKL----EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGD 189 (474)
T ss_dssp SSCCHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHH
T ss_pred cccHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChh
Confidence 555 6676666544321 2224677788888899999999999999999876 47788899999999999
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--------CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 023326 173 ---HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH--------DMPNKIIEVFADMEELGVR--PDEDTVRRIASA 239 (284)
Q Consensus 173 ---g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~--------G~~~~A~~l~~~M~~~g~~--Pd~~ty~~ll~a 239 (284)
|++++|...+++.++.. |.+...|..+-..|... |++++|++.|++..+..-. -+...|..+-..
T Consensus 190 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~ 267 (474)
T 4abn_A 190 EHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATL 267 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHH
Confidence 99999999999999864 55888899999999999 9999999999998775211 378899999999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|.+.|++..+.
T Consensus 268 ~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 268 HKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.46 E-value=4.5e-06 Score=70.01 Aligned_cols=124 Identities=12% Similarity=-0.008 Sum_probs=106.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQG--A-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~--p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...|++++|+..|+++.+.... | +..+|..+-..+...|++++|...|++.++.. |.+..+|..+...|...|+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTC
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccC
Confidence 44568899999999999986421 1 46788999999999999999999999999874 5578899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+++|++.|++..+.. ..+...+..+...|...|++++|.+.++++.+..
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999999988753 2257789999999999999999999999998653
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.45 E-value=3e-05 Score=67.17 Aligned_cols=153 Identities=14% Similarity=-0.006 Sum_probs=123.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.|..++|...|+..-. ...-+...+..+-..|.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|
T Consensus 16 ~g~~~~A~~~~~~~l~----~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 90 (359)
T 3ieg_A 16 AGQLADALSQFHAAVD----GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEA 90 (359)
T ss_dssp TTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCCHHHHHHHHHHHHh----hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHH
Confidence 4666667666665532 122356777888888999999999999999998763 22678899999999999999999
Q ss_pred HHHHHHHHHcCCCC---CCHHHHHHH------------HHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 023326 179 ESLWNMILHTQTRS---ISKRLFSRM------------ISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV 243 (284)
Q Consensus 179 ~~l~~~m~~~~~~~---~~~~tyn~l------------I~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~ 243 (284)
...+++..+.. | .+...+..+ ...|...|++++|+++|+++.+.. ..+...+..+...|...
T Consensus 91 ~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 167 (359)
T 3ieg_A 91 EDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKE 167 (359)
T ss_dssp HHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHC
Confidence 99999998763 3 355555555 588999999999999999987653 23677889999999999
Q ss_pred CCHHHHHHHHHHhHHh
Q 023326 244 GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 244 G~~d~a~~l~~~m~~~ 259 (284)
|++++|...+++..+.
T Consensus 168 ~~~~~A~~~~~~~~~~ 183 (359)
T 3ieg_A 168 GEPRKAISDLKAASKL 183 (359)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998865
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.45 E-value=1.5e-05 Score=61.54 Aligned_cols=122 Identities=8% Similarity=-0.051 Sum_probs=100.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+...|++++|+..|+...+.. +.+..++..+-..+...|++++|...+++.++.. |.+...|..+...|.+.|++++
T Consensus 23 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~ 99 (166)
T 1a17_A 23 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 99 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhccHHH
Confidence 899999999999999988753 2367888899999999999999999999998874 5578889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPDEDTV--RRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty--~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++.|++..+..-. +...+ ..+...+.+.|++++|.+.+......
T Consensus 100 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 100 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999998765322 33344 44444577889999999999876543
No 55
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.45 E-value=8.4e-06 Score=75.33 Aligned_cols=152 Identities=6% Similarity=-0.128 Sum_probs=125.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|..... ..|+...+..+-..|.+.|++++|+..|+...+.. +.+..+|..+-..+...|++++|
T Consensus 256 ~~~~~~A~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 256 KNNLLDAQVLLQESIN-----LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp TTCHHHHHHHHHHHHH-----HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445556555554432 34667788888888999999999999999998764 23678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
...+++.++.. |.+...|..+...|.+.|++++|+++|++..+.. .-+...+..+...|...|++++|.+.+++..+
T Consensus 330 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999864 4467789999999999999999999999988763 22566888899999999999999999999875
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
.
T Consensus 407 ~ 407 (537)
T 3fp2_A 407 L 407 (537)
T ss_dssp H
T ss_pred c
Confidence 4
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.42 E-value=8.2e-06 Score=79.79 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=123.5
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~ 175 (284)
-.|..++|...|+..-+ ..| +..+|..+=..|.+.|++++|++.|++.++. .| +...|+.|-..|.+.|++
T Consensus 21 ~~G~~~eAi~~~~kAl~-----l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 21 EQGNIEEAVRLYRKALE-----VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HTTCHHHHHHHHHHHHH-----HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 35666667666654422 123 3566677777799999999999999998875 34 478999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
++|.+.|++.++. .|.+...|+.+-..|.+.|++++|++.|++..+. .| +...|..+...|...|++++|.+.++
T Consensus 94 ~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 94 QGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 9999999999886 4668899999999999999999999999997765 45 46689999999999999999998888
Q ss_pred HhHH
Q 023326 255 KYLS 258 (284)
Q Consensus 255 ~m~~ 258 (284)
+..+
T Consensus 170 kal~ 173 (723)
T 4gyw_A 170 KLVS 173 (723)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.41 E-value=1.4e-05 Score=78.19 Aligned_cols=130 Identities=12% Similarity=0.100 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
..+|+.+=..|.+.|++++|++.|++-++. .| +...|+.|-..|.+.|++++|.+.|++.++. .|.+...|+.+-
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 445666666699999999999999998876 34 4789999999999999999999999999886 466888999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|.+.|++++|++.|++..+. .| +...|+.+-..|...|++++|.+.|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999997765 45 5678999999999999999999999988764
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.40 E-value=1.5e-05 Score=66.83 Aligned_cols=130 Identities=8% Similarity=0.017 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.+..+-..|.+.|++++|+..|+...+.+-.|+ ...|..+-..+.+.|++++|...++...+.. |.+..+|..+-.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 116 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS 116 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 445555567777777777777777766332222 3346666677777777777777777776653 335566777777
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|...|++++|++.|++..+. .| +...|..+-..+...+++++|.+.|++..+.
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 171 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777777777777777765544 33 3344444442344445777777777766654
No 59
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.39 E-value=1.4e-05 Score=73.79 Aligned_cols=130 Identities=11% Similarity=0.043 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
++..+-..+...|++++|+..|+...+. .|+..+|..+-..+...|++++|..++++..+.. |.+..+|..+...|
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHH
Confidence 4556666788999999999999999986 4668889999999999999999999999999874 45788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...|++++|++.|++..+..- -+...|..+...|...|++++|.+++++..+..
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 374 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF 374 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999887542 245788899999999999999999999998764
No 60
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.36 E-value=2.2e-05 Score=68.79 Aligned_cols=135 Identities=5% Similarity=-0.024 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CH
Q 023326 121 EFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQG-ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SK 195 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~-p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~ 195 (284)
.++..++..+-.++...|++++|++++.+-+..|-. -+...+..++..+.+.|+.+.|.++++.|.+. .|. +.
T Consensus 97 ~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d 174 (310)
T 3mv2_B 97 QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN 174 (310)
T ss_dssp CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence 456666667778899999999999999988766532 35678889999999999999999999999876 220 24
Q ss_pred HHHHHHHHH--HHh--CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISL--YDH--HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~--~~~--~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+..-|..+ ... .++.++|+.+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555555 332 34999999999998665 466555566666899999999999999977654
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.34 E-value=0.00025 Score=59.75 Aligned_cols=127 Identities=9% Similarity=-0.039 Sum_probs=103.4
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+=..|.+ .|++++|+..|+...+.+ +...+..|-..|.. .+++++|...|++..+.+ +
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~ 145 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----D 145 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----c
Confidence 67777777778888 899999999998888775 67788888888888 889999999998888764 4
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..+-..|.. .|++++|++.|++..+.+ +...+..+-..|.. .|+.++|.+.|++..+.
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 5567777777877 889999999999887775 56777778888888 89999999998887765
No 62
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.31 E-value=3e-05 Score=56.31 Aligned_cols=99 Identities=17% Similarity=0.166 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...|..+...+...|++++|.++++++.+.. |.+..+|..+...|.+.|++++|+.+|+++.+.. ..+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 5678888899999999999999999998864 4578889999999999999999999999988753 236778899999
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|...|++++|...++++.+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999987653
No 63
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=4.2e-05 Score=55.99 Aligned_cols=117 Identities=9% Similarity=-0.011 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..+...|++++|+..|++..+.. ..+...+..+-..+...|++++|...++...+.. |.+...|..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHH
Confidence 34444455889999999999999988753 3367888889999999999999999999998863 55788899999999
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.+.|++++|++.|++..+..- -+...+..+...+...|+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 999999999999999876532 2566777777777776653
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.29 E-value=1.4e-05 Score=67.03 Aligned_cols=128 Identities=13% Similarity=0.062 Sum_probs=104.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSRMISLYDHH 208 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~ 208 (284)
.-..+.+.|++++|+..|++..+.. +-+...+..+-..+...|++++|...+++.++....+. ....|..+-..|...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3345888999999999999998763 12344788888899999999999999999998542221 244589999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 209 DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 209 G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|++++|++.|++..+..- -+...|..+-..|...|++++|.+.+++..+.
T Consensus 88 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp TCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred ccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 999999999999877532 25578999999999999999999999887654
No 65
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.28 E-value=6.1e-05 Score=71.00 Aligned_cols=134 Identities=8% Similarity=-0.068 Sum_probs=110.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|.+.|++++|.+.+++.++.. |.+...|..+-
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 98 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--PEHPGIALWLG 98 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 35566666667899999999999999988753 2357788889899999999999999999998864 55788899999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV---GQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~---G~~d~a~~l~~~m~~~~ 260 (284)
..|.+.|++++|++.|++..+..- -+...+..+...+... |+.++|.+.+++..+..
T Consensus 99 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999999999999999999876532 2567888888999999 99999999998887553
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.28 E-value=0.00014 Score=59.56 Aligned_cols=140 Identities=9% Similarity=0.028 Sum_probs=108.6
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHH
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~ 176 (284)
..+..++|...|+..-. ....++...+..+-..|.+.|++++|+..|+...+. .| +...|..+-..+.+.|+++
T Consensus 19 ~~~~~~~A~~~~~~al~---~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 19 NAKNYAVAFEKYSEYLK---LTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HTTCHHHHHHHHHHHHH---HTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHH
T ss_pred HccCHHHHHHHHHHHHh---ccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHH
Confidence 35666667666655432 112256666666777899999999999999998875 34 4678888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCH
Q 023326 177 EAESLWNMILHTQTRSISK-------RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---EDTVRRIASAFQRVGQD 246 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~-------~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~~ty~~ll~a~~~~G~~ 246 (284)
+|...+++.++.. |.+. ..|..+-..+...|++++|++.|++..+. .|+ ...|..+-..|...|..
T Consensus 94 ~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 94 EYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999864 4455 55788888899999999999999997654 666 45777777888888877
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=0.00016 Score=60.89 Aligned_cols=145 Identities=8% Similarity=-0.019 Sum_probs=121.8
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--- 171 (284)
.+..++|...|....+ .-+..++..+-..|.. .|++++|+..|++-.+.+ +...+..|-..|..
T Consensus 19 ~~~~~~A~~~~~~a~~------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACD------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp TTCHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHH------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCC
Confidence 4666667777665432 2355677777788888 999999999999998886 77888888888999
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----
Q 023326 172 -DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR---- 242 (284)
Q Consensus 172 -~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~---- 242 (284)
.+++++|...|++..+.+ +...+..+-..|.. .|++++|++.|++..+.+ +...+..+-..|..
T Consensus 90 ~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~ 162 (273)
T 1ouv_A 90 VSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGT 162 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred cccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCC
Confidence 999999999999998863 66778889999999 999999999999998877 66778888888888
Q ss_pred cCCHHHHHHHHHHhHHh
Q 023326 243 VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~ 259 (284)
.++.++|.+.|++..+.
T Consensus 163 ~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 163 PKDLKKALASYDKACDL 179 (273)
T ss_dssp CCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 99999999999988765
No 68
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=6.2e-05 Score=66.46 Aligned_cols=124 Identities=15% Similarity=0.087 Sum_probs=104.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT--------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~--------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.|.+.|++++|+..|++.++..-... ...|..+-..|.+.|++++|...+++.++.. |.+...|
T Consensus 156 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~ 233 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNNEKGL 233 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 39999999999999999887642211 5889999999999999999999999999864 5688899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHhHHhc
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQ-KLVLKKYLSKW 260 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a-~~l~~~m~~~~ 260 (284)
..+-.+|...|++++|++.|++..+. .| +...+..+-..+.+.|+.+++ .+++..|..+.
T Consensus 234 ~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 234 SRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998765 34 567888888999999999988 55777776553
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.22 E-value=5.5e-05 Score=65.16 Aligned_cols=161 Identities=10% Similarity=-0.003 Sum_probs=118.5
Q ss_pred HhcCCchHHHHHHHHHH-HHHccCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDK-WTAWETEFP-LIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFD 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~-~~~~~~~p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~ 170 (284)
..|..++|...|...-. +...+..++ ..+|+.+-..|.+.|++++|+..|++-.+. |-.. -..+|+.+-..|.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~ 128 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE 128 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 35777777777754433 222322222 457788888899999999999999987643 2111 1457888889999
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHH
Q 023326 171 KD-HRADEAESLWNMILHTQTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE------DTVRRIASA 239 (284)
Q Consensus 171 ~~-g~~~~A~~l~~~m~~~~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~------~ty~~ll~a 239 (284)
.. |++++|...|++.++..-...+ ..+|+.+...|.+.|++++|++.|++..+....... ..|..+...
T Consensus 129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 208 (292)
T 1qqe_A 129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC 208 (292)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 96 9999999999988764321111 356889999999999999999999998876533222 157777888
Q ss_pred HHHcCCHHHHHHHHHHhHH
Q 023326 240 FQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~ 258 (284)
+...|++++|...|++..+
T Consensus 209 ~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 209 QLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHTTCHHHHHHHHHGGGC
T ss_pred HHHcCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.21 E-value=9.4e-05 Score=62.14 Aligned_cols=156 Identities=8% Similarity=0.054 Sum_probs=113.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHh-
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDK- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~- 171 (284)
.|..++|...|+.+-. ..|+ ...+..+-..|.+.|++++|+..|+...+..- .|+ ...+..+-..+.+
T Consensus 28 ~g~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 28 QGKYDRAIEYFKAVFT-----YGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp TTCHHHHHHHHHHHGG-----GCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH-----hCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 4556666666655421 2232 45566666779999999999999999987631 223 4566667777777
Q ss_pred -------cCCHHHHHHHHHHHHHcCCCCCCHHHH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 172 -------DHRADEAESLWNMILHTQTRSISKRLF-----------------SRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 172 -------~g~~~~A~~l~~~m~~~~~~~~~~~ty-----------------n~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
.|++++|...|++.++..-. +...+ -.+-..|.+.|++++|+..|++..+..-.
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 180 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD 180 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred cccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999999999999987533 33333 45578899999999999999998765322
Q ss_pred -C-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHhHHhcC
Q 023326 228 -P-DEDTVRRIASAFQRV----------GQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 228 -P-d~~ty~~ll~a~~~~----------G~~d~a~~l~~~m~~~~~ 261 (284)
+ ....+..+..+|... |++++|...+++..+.+.
T Consensus 181 ~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p 226 (261)
T 3qky_A 181 TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP 226 (261)
T ss_dssp STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence 2 234677777788766 899999999999988765
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.20 E-value=8.6e-05 Score=64.33 Aligned_cols=146 Identities=7% Similarity=0.058 Sum_probs=113.8
Q ss_pred chHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHH
Q 023326 103 NEKHAVYGALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-MG-TYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 103 ~~a~~vf~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-~~-ty~~Ll~~~~~~g~~~~A 178 (284)
++|..+|+.. +. ..| +...+..+...+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|
T Consensus 81 ~~A~~~~~rA-----l~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 81 DEAANIYERA-----ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHHH-----HTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHH-----HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHH
Confidence 5566665543 22 234 4567888888999999999999999999974 454 33 799999999999999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHH-HhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLY-DHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~-~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..+|++.++.. |.+...|....... ...|++++|.++|++..+. .| +...|..++..+.+.|++++|..+|++.
T Consensus 154 ~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 154 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999998864 33555565443332 2379999999999998664 23 5678889999999999999999999999
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 230 l~~ 232 (308)
T 2ond_A 230 LTS 232 (308)
T ss_dssp HHS
T ss_pred Hhc
Confidence 875
No 72
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.16 E-value=5e-05 Score=68.58 Aligned_cols=153 Identities=5% Similarity=-0.004 Sum_probs=120.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQ-WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE 177 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~-~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~ 177 (284)
.+..++|...|+..-. ...-+...|+.+-..|.+.|+ +++|+..|++.++.. .-+...|+.+-..+.+.|++++
T Consensus 110 ~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~e 184 (382)
T 2h6f_A 110 DERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQ 184 (382)
T ss_dssp TCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTT
T ss_pred CCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHH
Confidence 4667777777765532 222356777888888889997 999999999988763 2267788889899999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHH-----HH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR-VGQDDKQ-----KL 251 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~-~G~~d~a-----~~ 251 (284)
|...|++.++. .|.+...|..+-..|.+.|++++|++.|+++.+.... +...|+.+-..+.+ .|..++| .+
T Consensus 185 Al~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~ 261 (382)
T 2h6f_A 185 ELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQ 261 (382)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred HHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 99999999986 4568889999999999999999999999998876432 67788888888888 6665777 46
Q ss_pred HHHHhHHh
Q 023326 252 VLKKYLSK 259 (284)
Q Consensus 252 l~~~m~~~ 259 (284)
.+++..+.
T Consensus 262 ~~~~Al~l 269 (382)
T 2h6f_A 262 YTLEMIKL 269 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776665
No 73
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.15 E-value=7.7e-05 Score=54.96 Aligned_cols=117 Identities=7% Similarity=0.033 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+..|++..+.. ..+...+..+-..+...|++++|...+++.++.. |.+...|..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 4445555556888999999999999887652 2367788888888888999999999999888763 447778888889
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG 244 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G 244 (284)
.|.+.|++++|++.|++..+..-. +...+..+...+...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 999999999999999887654211 2334444444554443
No 74
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.13 E-value=5.3e-05 Score=55.53 Aligned_cols=110 Identities=6% Similarity=0.038 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCC----HHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SIS----KRLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~----~~tyn~ 200 (284)
.+..+-..+...|++++|+..|+...+.. +.+...+..+-..+...|++++|...+++.++..-. +.+ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34455556889999999999999988763 336778888888899999999999999988776422 112 677888
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
+...|.+.|++++|.+.|++..+. .|+......+-.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 899999999999999999998775 355544444433
No 75
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.13 E-value=0.00011 Score=63.00 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGATM----GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRLFS 199 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~tyn 199 (284)
..+..+...|++++|..++++..+.. ..|+. ..|..+...+...|++++|...+++..+......+ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677899999999999999988743 23332 23445666667778999999999999885443323 34699
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH----C-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEE----L-GVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~----~-g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
.+-..|...|++++|++.|++..+ . +..+... +|..+...|.+.|++++|.+.+++..+
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999763 2 3334333 788899999999999999999987764
No 76
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.11 E-value=0.00026 Score=65.98 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLL-AFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..|......+.+.|++++|.++|+.-.+..- .+...|..... .+...|+.++|..+|+..++.. |.+...|..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 4788888888889999999999999886521 12222322221 2346899999999999888763 557888999999
Q ss_pred HHHhCCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELG-VRPD--EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g-~~Pd--~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.+.|+.++|..+|++....+ ..|+ ...|...+.-....|+.+.+..++.++.+.+.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999999999988764 3343 55788888888889999999999988876654
No 77
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.09 E-value=6e-05 Score=59.64 Aligned_cols=133 Identities=8% Similarity=0.029 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
+...+..+-..|.+.|++++|+..|+...+.. |+...+..+... +...+...+|...+++.++. .|.+...+..+
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~l 114 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACEL 114 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34555666667999999999999999876543 344433322111 22223334567888888875 46688889999
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 202 ISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|...|++++|++.|++..+..-.+ +...+..+...|...|+.++|...|++....
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 999999999999999999988775433 4668889999999999999999999877654
No 78
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=5.5e-05 Score=57.35 Aligned_cols=134 Identities=12% Similarity=0.024 Sum_probs=100.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~t 197 (284)
+..+-..|...|++++|+..|++..+..- .++ ..++..+-..+...|++++|...+++..+..-...+ ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 34444558899999999999998765321 112 257888888899999999999999887654322112 456
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+..+-..|...|++++|++.+++..+. +..+ ....+..+-..|...|++++|.+.+++..+..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 788889999999999999999986543 3222 23467888889999999999999998876543
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.06 E-value=5.6e-05 Score=65.09 Aligned_cols=130 Identities=12% Similarity=-0.007 Sum_probs=101.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSK----GQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRLFSRM 201 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~----g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~tyn~l 201 (284)
...|...|++++|+..|++..+. |-.++ ..+|+.+-..|.+.|++++|...+++.++......+ ..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44588999999999999987653 32222 578999999999999999999999888765322112 4578899
Q ss_pred HHHHHhC-CChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 202 ISLYDHH-DMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 202 I~~~~~~-G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-..|... |++++|++.|++-.+. |-.+. ..+|..+...|.+.|++++|...|++..+..
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 9999996 9999999999986543 21111 3578888999999999999999999988654
No 80
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.05 E-value=0.00038 Score=58.31 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SISKRLFSRM 201 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~l 201 (284)
+-..-..+.+.|++++|+..|+...+.. |+ ...+..+-..|.+.|++++|...|+..++..-. +.....|..+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3333444889999999999999998763 33 567788888899999999999999999987532 2234567777
Q ss_pred HHHHHh--------CCChhHHHHHHHHHHHCCC-CCCHHHH---------------HHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 202 ISLYDH--------HDMPNKIIEVFADMEELGV-RPDEDTV---------------RRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 202 I~~~~~--------~G~~~~A~~l~~~M~~~g~-~Pd~~ty---------------~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
-..|.. .|++++|++.|++..+..- .+..... ..+-..|.+.|++++|...|++..
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 788888 9999999999999876531 1222211 455677899999999999999998
Q ss_pred HhcC
Q 023326 258 SKWK 261 (284)
Q Consensus 258 ~~~~ 261 (284)
+.+.
T Consensus 176 ~~~p 179 (261)
T 3qky_A 176 DAYP 179 (261)
T ss_dssp HHCT
T ss_pred HHCC
Confidence 7755
No 81
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.04 E-value=9.1e-05 Score=58.26 Aligned_cols=99 Identities=11% Similarity=0.037 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHcCCCCCCHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLA-FDKDHRA--DEAESLWNMILHTQTRSISKRLFS 199 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~-~~~~g~~--~~A~~l~~~m~~~~~~~~~~~tyn 199 (284)
+...+..+-..|...|++++|+..|++..+.. +.+...+..+-.. +...|++ ++|...+++.++.. |.+...|.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~ 119 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD--SNEITALM 119 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC--CCcHHHHH
Confidence 45566666666777777777777777766542 1245555556555 5566776 77777777776653 44566677
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.+...|...|++++|++.|++..+.
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777777777777777776654
No 82
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.04 E-value=0.00014 Score=65.57 Aligned_cols=128 Identities=9% Similarity=0.083 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..+=.+|.+.|++++|+..|+..++.. .-+...|..+-.++.+.|++++|...++++++.. |.+...|+.+-
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg 241 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRY 241 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 44555555555777777777777777777652 2256677777777777777777777777777753 44677777777
Q ss_pred HHHHh-CCChhHH-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDH-HDMPNKI-----IEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~-~G~~~~A-----~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..|.+ .|..++| ++.|++.... .| +...|+.+-..+.+.|. +...+.++..
T Consensus 242 ~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~-~~~~~a~~~~ 299 (382)
T 2h6f_A 242 FVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGL-SKYPNLLNQL 299 (382)
T ss_dssp HHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCG-GGCHHHHHHH
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCc-cchHHHHHHH
Confidence 77777 5555666 3666665553 45 45566666666666664 2234444443
No 83
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.03 E-value=1.7e-05 Score=68.54 Aligned_cols=149 Identities=7% Similarity=-0.037 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLY 205 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~ 205 (284)
.....|...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+..... +++ ...+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHHH
Confidence 34566889999999999999988654 55445555555788999999999999855432 212 23577778899
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHHhcCC--------------Cccccce
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDE--DTVRRIASAFQRVGQDDKQKLVLKKYLSKWKY--------------IHFKGER 269 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~--~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~~--------------~~~~g~~ 269 (284)
.+.|++++|++.|++-......|.. ......-.++.+.|+.++|..+|+++...... ..-.-++
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~~~~~~~~~t~~~~ 261 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALKDPSYRLKTTTAEQ 261 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHHCTTCCCCCCCHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHhCCCCCCCCCcHHH
Confidence 9999999999999997743333652 35566667888999999999999999765332 1114455
Q ss_pred eeeecccccccCC
Q 023326 270 VRVRRDAWYESGS 282 (284)
Q Consensus 270 ~~~~~~~~~~~~~ 282 (284)
+..+++-|.|.-+
T Consensus 262 i~~r~d~wdp~s~ 274 (282)
T 4f3v_A 262 IASRADPWDPGSV 274 (282)
T ss_dssp HHTBSSTTCGGGB
T ss_pred HHHhcCCCCCccC
Confidence 6788899988644
No 84
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=0.00027 Score=55.09 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAF 240 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~ 240 (284)
.+..+-..+.+.|++++|...|+..++. .|.+...|..+-..|.+.|++++|++.|++..+..-. +...|..+-.+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 4444445555566666666666666554 2445555666666666666666666666655443211 334555555556
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666555543
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.02 E-value=6.6e-05 Score=69.53 Aligned_cols=134 Identities=12% Similarity=0.023 Sum_probs=112.8
Q ss_pred ccCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHH
Q 023326 118 WETEFPLIAAAKALRILRKR---------GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD--------HRADEAES 180 (284)
Q Consensus 118 ~~~~p~~~~y~~~i~~~~~~---------g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~--------g~~~~A~~ 180 (284)
+...|+...+..+-..|.+. |++++|++.|++..+.. +-+...|..+-.+|... |++++|..
T Consensus 164 l~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 164 LTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 44568878888888888888 99999999999988763 23578899999999988 99999999
Q ss_pred HHHHHHHcCCCC---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 181 LWNMILHTQTRS---ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 181 l~~~m~~~~~~~---~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.|++.++. .| .+...|..+-..|.+.|++++|++.|++..+.. | +...+..+-..+...|++++|.+.+.++
T Consensus 243 ~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 243 AYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999986 34 588899999999999999999999999987653 4 5567888889999999999998765544
No 86
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.02 E-value=0.00015 Score=53.33 Aligned_cols=100 Identities=12% Similarity=-0.012 Sum_probs=87.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~l 236 (284)
.+...|..+-..+.+.|++++|..++++..+. .|.+...|..+...|...|++++|++.|++..+.. ..+...+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 35678888999999999999999999999876 35578889999999999999999999999987753 2267788889
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...|.+.|++++|.+.|++..+.
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999988765
No 87
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.01 E-value=0.00016 Score=54.24 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=74.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|++.|++.++.. +-+...|..+-.+|.+.|++++|...+++.++. .|.+...|..+-..|...|++++
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 99 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAACLVAMREWSK 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHCCCHHH
Confidence 889999999999999887653 236788888888899999999999999998886 45578889999999999999999
Q ss_pred HHHHHHHHHHC
Q 023326 214 IIEVFADMEEL 224 (284)
Q Consensus 214 A~~l~~~M~~~ 224 (284)
|++.|++..+.
T Consensus 100 A~~~~~~al~l 110 (126)
T 4gco_A 100 AQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987664
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.01 E-value=0.0006 Score=56.04 Aligned_cols=159 Identities=11% Similarity=0.014 Sum_probs=110.0
Q ss_pred HhcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCH-HHHHHHHHHHH-----
Q 023326 98 VSELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGATM-GTYDTLLLAFD----- 170 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~-~ty~~Ll~~~~----- 170 (284)
..|..++|...|+.+.... .........+..+-.+|.+.|++++|+..|++..+.. -.+.. ..+-.+-..+.
T Consensus 16 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 3567777777777664310 0011113456667778999999999999999998753 22222 12322333333
Q ss_pred -------------hcCCHHHHHHHHHHHHHcCCCCCCHHHHH-----------------HHHHHHHhCCChhHHHHHHHH
Q 023326 171 -------------KDHRADEAESLWNMILHTQTRSISKRLFS-----------------RMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 171 -------------~~g~~~~A~~l~~~m~~~~~~~~~~~tyn-----------------~lI~~~~~~G~~~~A~~l~~~ 220 (284)
..|+.++|...|+++++.. |.+...+. .+-..|.+.|++++|+..|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 172 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEG 172 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 2578999999999999875 33433332 345578899999999999999
Q ss_pred HHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 221 MEELGVRPD----EDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 221 M~~~g~~Pd----~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+.+.- |+ ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 173 ~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 173 MLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 87753 33 24688888999999999999999998886643
No 89
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=0.00032 Score=52.20 Aligned_cols=99 Identities=8% Similarity=-0.062 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+-..+.+.|++++|+..|+...+.. +-+...|..+-..+...|++++|...++..++.. |.+...|..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence 355666677777788888888888888776653 2246677777777788888888888888877753 4467778888
Q ss_pred HHHHHhCCChhHHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-..|...|++++|++.|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 8888888888888888877654
No 90
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=0.00077 Score=48.04 Aligned_cols=97 Identities=8% Similarity=-0.071 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL 204 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~ 204 (284)
..+..+-..+...|++++|+..|+...+.. +.+...+..+-..+.+.|++++|...+++..+.. |.+...|..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 344455556888999999999999887753 2367788888888889999999999999988864 4477888889999
Q ss_pred HHhCCChhHHHHHHHHHHHC
Q 023326 205 YDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~ 224 (284)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999887654
No 91
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.98 E-value=0.00032 Score=54.48 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
+..+-..|.+.|++++|+..|++..+.. .-+...|..+-..|.+.|++++|...+++.++.. |.+...|..+-..|.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 3344445899999999999999988763 2267889999999999999999999999999874 557888999999999
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 023326 207 HHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g 225 (284)
+.|++++|++.|++..+..
T Consensus 91 ~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC
Confidence 9999999999999877653
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.96 E-value=0.00012 Score=62.80 Aligned_cols=131 Identities=8% Similarity=0.012 Sum_probs=100.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQG-AT----MGTYDTLLLAFDKDHRADEAESLWNMILHT-----QTRSISKRLF 198 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~-p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~~~~~~~ty 198 (284)
.+-..+...|++++|+..|+...+.... ++ ..+|+.|-..|...|++++|..++++..+. +..+....+|
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVR 199 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 3444566778999999999999874322 23 347999999999999999999999998742 1122233578
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHhHHh
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEE----LGVRPD-EDTVRRIASAFQRVG-QDDKQKLVLKKYLSK 259 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~----~g~~Pd-~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~~ 259 (284)
+.+-..|.+.|++++|++.+++..+ .+..+. ...|..+-..|.+.| ..++|.+.+++...-
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999987543 444444 568888889999999 569999999877643
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.96 E-value=0.00036 Score=52.28 Aligned_cols=97 Identities=10% Similarity=-0.037 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASA 239 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a 239 (284)
..+..+=..|.+.|++++|.+.|++.++. .|.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 56777778899999999999999999886 46688999999999999999999999999987653 2256789999999
Q ss_pred HHHcCCHHHHHHHHHHhHHh
Q 023326 240 FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~ 259 (284)
|...|++++|.+.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.96 E-value=0.00027 Score=61.86 Aligned_cols=150 Identities=4% Similarity=-0.154 Sum_probs=107.9
Q ss_pred hcCCchHHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHH-
Q 023326 99 SELPNEKHAVYGALDKWTAWETEF---PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-----TMGTYDTLLLAF- 169 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p---~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-----~~~ty~~Ll~~~- 169 (284)
.|..++|.+.+... +...| +...+..++..|.+.|+.+.|.+.++.|.+. .| +-.+..-|..++
T Consensus 113 ~g~~eeAL~~l~~~-----i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v 185 (310)
T 3mv2_B 113 LGDLDKSLETCVEG-----IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYI 185 (310)
T ss_dssp HTCHHHHHHHHHHH-----HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-----hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHH
Confidence 46666665555432 23333 6677788999999999999999999999876 56 355666666663
Q ss_pred -HhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC-----C---CC-CHHHHHHHH
Q 023326 170 -DKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG-----V---RP-DEDTVRRIA 237 (284)
Q Consensus 170 -~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g-----~---~P-d~~ty~~ll 237 (284)
...| +..+|..+|+++.+.. | +..+-..++.++.+.|++++|.+.++.+.+.- - .| |..++..+|
T Consensus 186 ~l~~g~~~~q~A~~~f~El~~~~--p-~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 186 KFATNKETATSNFYYYEELSQTF--P-TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHTCSTTTHHHHHHHHHHTTS--C-SHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHhC--C-CcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 2234 8999999999997753 3 54444555568999999999999999876531 1 24 566775776
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
......|+ +|.+++.++++..
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHHHHhCh--HHHHHHHHHHHhC
Confidence 66667787 7889998887654
No 95
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.96 E-value=0.00021 Score=55.76 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=81.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..+.+.|++++|+..|+...+.. +-+...|..+-.+|.+.|++++|...|++.++.. |.+...|..+-.+|.+.|++
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCH
Confidence 34899999999999999998763 2367889999999999999999999999999864 55778899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCH
Q 023326 212 NKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 212 ~~A~~l~~~M~~~g~~Pd~ 230 (284)
++|++.|++..+. .||.
T Consensus 121 ~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 121 LKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHHHHHHHh--CCCH
Confidence 9999999998775 3554
No 96
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00029 Score=50.40 Aligned_cols=99 Identities=13% Similarity=0.030 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+...+...|++++|..++++..+.. |.+...|..+...|.+.|++++|++.+++..+..- .+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHH
Confidence 35677888888999999999999999998864 45788899999999999999999999999876532 2577888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHHh
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|...|++++|.+.+++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 9999999999999999988754
No 97
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.94 E-value=0.00034 Score=59.92 Aligned_cols=128 Identities=8% Similarity=0.012 Sum_probs=97.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCC----HHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKG---QGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQ-TRSIS----KRLFS 199 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g---~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~-~~~~~----~~tyn 199 (284)
+-..+...|++++|+..|++..+.. ..+. ..+|+.+-..|...|++++|...+++..+.. ..+.+ ..+|+
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~ 200 (293)
T 2qfc_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHH
Confidence 4444777889999999999987542 1222 4589999999999999999999999887321 11211 25789
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHH-HHHHHHhH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQ-KLVLKKYL 257 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a-~~l~~~m~ 257 (284)
-+-..|.+.|++++|++.|++..+. +.... ..+|..+-..|.+.|+.++| ...+++..
T Consensus 201 nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 9999999999999999999986432 22222 56888899999999999999 77677654
No 98
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.94 E-value=0.00027 Score=51.57 Aligned_cols=100 Identities=16% Similarity=0.108 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCC--CCC----HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGV--RPD----EDT 232 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~--~Pd----~~t 232 (284)
...|..+-..+...|++++|..++++.++.. |.+...|..+...|...|++++|++.|++...... .++ ...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3567788888999999999999999998874 45788899999999999999999999999876532 233 678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|..+...|.+.|++++|.+.|++..+..
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8889999999999999999999988753
No 99
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.94 E-value=0.00053 Score=51.00 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=87.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRI 236 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~l 236 (284)
.+...|..+-..+.+.|++++|...|+..++.. |.+...|..+-..|...|++++|+..|++..+..- -+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 467888999999999999999999999998874 55788899999999999999999999999877542 267788999
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-..|...|++++|...|.+..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.94 E-value=0.00072 Score=57.89 Aligned_cols=134 Identities=13% Similarity=0.046 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--C--HH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT-----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--S--KR 196 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~--~~ 196 (284)
.+...+..+...|++++|++.++...+..-..+ ...+..+...+...|++++|...+++..+...... . ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334456669999999999999998877532211 12334455566778999999999998876433211 1 45
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEE----LGVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~----~g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+|+.+-..|...|++++|++.|++..+ .+-.+ +..+|..+-..|...|++++|.+.+++..+.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~ 225 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 799999999999999999999998762 22222 2258889999999999999999999987644
No 101
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.93 E-value=8.1e-05 Score=63.45 Aligned_cols=136 Identities=13% Similarity=0.033 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----H
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----K 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.++ ..++..+...+...|++++|..++++..+......+ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 356677778899999999999999876431 0112 347888888999999999999999888654222112 5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.++..+...|...|++++|++.+++..+. +-.+ ...++..+...|.+.|++++|.+.+++..+..
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 67888999999999999999999987543 2221 24478888899999999999999999887654
No 102
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.92 E-value=0.00019 Score=63.84 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=114.8
Q ss_pred HhcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG--Q---GA-TMGTYDTLLLAF 169 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~---~p-~~~ty~~Ll~~~ 169 (284)
..|..++|...|...... ......+ ....|..+=..|...|++++|+..|++-.+.- . .+ ...+++.+-..|
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 346666666666544321 1111111 23456666677999999999999999876531 1 11 246788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAF 240 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~ 240 (284)
...|++++|...+++.++..-... ...+|+.+-..|...|++++|++.|++..+. +..| ...++..+-..|
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 274 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH 274 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 999999999999988875422211 2246888999999999999999999987652 4424 456788899999
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|.+.+++..+.
T Consensus 275 ~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 275 YKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 103
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.92 E-value=0.0001 Score=58.68 Aligned_cols=136 Identities=5% Similarity=-0.149 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---C-CC-C
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQ---T-RS-I 193 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~---~-~~-~ 193 (284)
...+..+-..|...|++++|+..|++..+. |..| ...+++.+-..+...|++++|...+++..+.. . .+ .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344555555689999999999999987752 2222 34678888888999999999999998876541 1 11 1
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
....++.+-..|...|++++|++.+++..+. +... -..++..+-..|...|++++|.+.+++..+.
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 2455788889999999999999999986532 2211 1335677888899999999999999877654
No 104
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.91 E-value=0.00017 Score=63.71 Aligned_cols=135 Identities=13% Similarity=0.038 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----H
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS----K 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.++ ..+|..+-..|...|++++|...+++..+......+ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 456677778999999999999999877531 1122 347888889999999999999999888654222112 5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|..+...|...|++++|++.|++..+. +-.+. ..++..+-..|...|++++|.+.+++..+.
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67889999999999999999999987543 22222 557888889999999999999999886643
No 105
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.91 E-value=0.00047 Score=55.29 Aligned_cols=121 Identities=12% Similarity=0.071 Sum_probs=91.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKG-QGAT--------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g-~~p~--------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
+.+.|++++|+..|++..+.. -.|+ ...|..+-..|.+.|++++|...++..++. .|.+...|
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 125 (198)
T 2fbn_A 48 FFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKAL 125 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHH
Confidence 899999999999999988642 1221 278888888999999999999999999886 45588889
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHhHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQK-LVLKKYLS 258 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~-~l~~~m~~ 258 (284)
..+-.+|...|++++|++.|++..+. .| +...+..+...+...|+.+++. ..+..|..
T Consensus 126 ~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 126 YKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999997765 34 5567777777777777777666 55555543
No 106
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.91 E-value=0.00016 Score=51.38 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAF 240 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~ 240 (284)
+..+-..+.+.|++++|...+++.++.. |.+...|..+-..|...|++++|++.|++..+..-. .+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 3334444445555555555555554432 224444555555555555555555555554443210 0244445555555
Q ss_pred HHc-CCHHHHHHHHHHhHHh
Q 023326 241 QRV-GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~-G~~d~a~~l~~~m~~~ 259 (284)
.+. |++++|.+.+.+..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 555 5555555555554433
No 107
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.91 E-value=0.00036 Score=53.02 Aligned_cols=90 Identities=8% Similarity=-0.110 Sum_probs=74.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..+.+.|++++|+..|+...+.. +-+...|..+-..|.+.|++++|...|+..++.. |.+...|..+-..|...|++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCH
Confidence 34888999999999999888753 2367778888888899999999999999998864 55777788888999999999
Q ss_pred hHHHHHHHHHHHC
Q 023326 212 NKIIEVFADMEEL 224 (284)
Q Consensus 212 ~~A~~l~~~M~~~ 224 (284)
++|++.|++..+.
T Consensus 103 ~~A~~~~~~al~~ 115 (142)
T 2xcb_A 103 DGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 108
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.90 E-value=0.00044 Score=50.30 Aligned_cols=100 Identities=10% Similarity=-0.001 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+-..+...|++++|..++++..+.. |.+...|..+...|...|++++|++.+++..+.. ..+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 45678888888999999999999999998864 4578889999999999999999999999987653 22577888888
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.+++..+..
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999887653
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.90 E-value=0.00028 Score=54.38 Aligned_cols=98 Identities=9% Similarity=-0.150 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
...+..+-..+.+.|++++|+..|+...+.. +.+...|..+-.+|.+.|++++|...|++.+... |.+...|..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHH
Confidence 3444555666778888888888888877652 2366777777778888888888888888887753 456677888888
Q ss_pred HHHhCCChhHHHHHHHHHHHC
Q 023326 204 LYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|...|++++|++.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888876553
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.90 E-value=0.00034 Score=53.91 Aligned_cols=101 Identities=9% Similarity=0.044 Sum_probs=85.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...+..+-..+.+.|++++|...|+..+.. .|.+...|..+-..|...|++++|++.|++.....- -+...|..+-
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 3456777778889999999999999999886 456888899999999999999999999999876531 2556788888
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+|...|++++|.+.|++..+...
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999998876543
No 111
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.90 E-value=6.3e-05 Score=70.22 Aligned_cols=128 Identities=10% Similarity=-0.035 Sum_probs=100.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-CCCHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQT-----R-SISKRLFS 199 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-----~-~~~~~tyn 199 (284)
.+...|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++.++... . |....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 366789999999999887643 23343 47899999999999999999999888764321 1 33456799
Q ss_pred HHHHHHHhCCChhHHHHHHHHHH-----HCCC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 200 RMISLYDHHDMPNKIIEVFADME-----ELGV-RPDED-TVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~-----~~g~-~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-|-..|...|++++|+.++++-. ..|- .|++. +.+.+-.++...|.+++|+.++.++.+..
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999753 3563 46666 55556677889999999999999998754
No 112
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.89 E-value=0.00032 Score=53.29 Aligned_cols=99 Identities=8% Similarity=0.048 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...+..+-..+.+.|++++|..+|+..+.. .|.+...|..+-..|.+.|++++|++.|++.....- -+...|..+-.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence 345566667788999999999999999986 456888899999999999999999999999877632 25567788888
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+|...|++++|.+.|+...+..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999887553
No 113
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00042 Score=51.93 Aligned_cols=90 Identities=13% Similarity=-0.018 Sum_probs=75.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
-..+.+.|++++|+..|++..+. .|+ ...|..+-..|.+.|++++|...++..++.. |.+...|..+...|.
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHHHHHHHHHH
Confidence 33488899999999999998865 466 6778888888999999999999999988763 457788888999999
Q ss_pred hCCChhHHHHHHHHHHHC
Q 023326 207 HHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~ 224 (284)
..|++++|++.|++..+.
T Consensus 111 ~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999987664
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00045 Score=50.93 Aligned_cols=96 Identities=13% Similarity=0.055 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+...=..+.+.|++++|+..|++..+.. +-+...|..+-..+.+.|++++|...+++.++.. |.+...|..+-..|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 34445556788888999999988877653 2357788888888888899999998888888763 55777888888888
Q ss_pred HhCCChhHHHHHHHHHHHC
Q 023326 206 DHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~ 224 (284)
...|++++|++.|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8889999998888887654
No 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.0013 Score=48.45 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIA 237 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll 237 (284)
...|..+-..+.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++|++.|++..+.. | +...|..+-
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHH
Confidence 3566777778899999999999999998864 5588889999999999999999999999987653 4 567888899
Q ss_pred HHHHHcCCHHHHHHHHHHhHHh
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+|...|++++|.+.|++..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHh
Confidence 9999999999999999987754
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.89 E-value=0.00024 Score=61.02 Aligned_cols=150 Identities=6% Similarity=-0.049 Sum_probs=109.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLL-LAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll-~~~~~~g~~~ 176 (284)
.|..++|...|+..-. ..| +...+..+-..|.+.|++++|+.+|+..... .|+........ ..+.+.++.+
T Consensus 130 ~g~~~~A~~~~~~al~-----~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQ-----LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp TTCHHHHHHHHHHHHH-----HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHH-----hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 4666677766665432 223 4556667777788999999999998887654 45544332222 2356677778
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+|...+++.++. .|.+...+..+-..|...|++++|++.|.+.....-. .+...+..+...|...|+.++|...+++
T Consensus 203 ~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 203 PEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 888888888775 4668888999999999999999999999998776422 2366888999999999999988888766
Q ss_pred hH
Q 023326 256 YL 257 (284)
Q Consensus 256 m~ 257 (284)
-.
T Consensus 281 al 282 (287)
T 3qou_A 281 QL 282 (287)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.88 E-value=0.00038 Score=54.08 Aligned_cols=100 Identities=12% Similarity=-0.023 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
+...|..+-..+.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 45678888888999999999999999999864 55888899999999999999999999999877632 2577899999
Q ss_pred HHHHHcCCHHHHHHHHHHhHHhc
Q 023326 238 SAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..|...|++++|.+.|++..+..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999887653
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.88 E-value=0.00074 Score=54.28 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=94.7
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A 178 (284)
.+..++|...|+.. ..|+...+..+-..|.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|
T Consensus 19 ~~~~~~A~~~~~~a-------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 90 (213)
T 1hh8_A 19 KKDWKGALDAFSAV-------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLA 90 (213)
T ss_dssp TTCHHHHHHHHHTS-------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred hCCHHHHHHHHHHH-------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHH
Confidence 34555555544322 25677888888888999999999999999988764 34678899999999999999999
Q ss_pred HHHHHHHHHcCCC--------------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 179 ESLWNMILHTQTR--------------SISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 179 ~~l~~~m~~~~~~--------------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.+.|++..+..-. |.....|..+-..|.+.|++++|++.|++..+..
T Consensus 91 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 91 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999885422 1133778999999999999999999999987654
No 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.87 E-value=0.00023 Score=50.44 Aligned_cols=95 Identities=9% Similarity=-0.044 Sum_probs=80.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~~ 205 (284)
..+-..+.+.|++++|+..|++..+.. ..+...|..+-..+.+.|++++|...+++.++.. |. +...|..+...|
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHH
Confidence 344455888999999999999988763 2367788889999999999999999999998863 55 688899999999
Q ss_pred HhC-CChhHHHHHHHHHHHCC
Q 023326 206 DHH-DMPNKIIEVFADMEELG 225 (284)
Q Consensus 206 ~~~-G~~~~A~~l~~~M~~~g 225 (284)
.+. |++++|++.|++.....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHhCCHHHHHHHHHHHhhcc
Confidence 999 99999999999987654
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.86 E-value=3.3e-05 Score=59.81 Aligned_cols=82 Identities=10% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP 211 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~ 211 (284)
..|.+.|++++|++.|++.++.. +-+..+|..+-..|.+.|++++|...|++.++. .|.+..+|..+-..|.+.|+.
T Consensus 39 ~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~ 115 (150)
T 4ga2_A 39 KLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVT 115 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCh
Confidence 33445555555555555544431 113444444555555555555555555555443 233444455555555555555
Q ss_pred hHHHH
Q 023326 212 NKIIE 216 (284)
Q Consensus 212 ~~A~~ 216 (284)
++|.+
T Consensus 116 ~~aa~ 120 (150)
T 4ga2_A 116 DGRAK 120 (150)
T ss_dssp SSHHH
T ss_pred HHHHH
Confidence 44433
No 121
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.86 E-value=0.0017 Score=57.14 Aligned_cols=162 Identities=9% Similarity=-0.034 Sum_probs=111.5
Q ss_pred HhcCCchHHHHHHHHHHHH-HccCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--C--CHHHHHHHHHHH
Q 023326 98 VSELPNEKHAVYGALDKWT-AWETE--FP-LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQG--A--TMGTYDTLLLAF 169 (284)
Q Consensus 98 ~~~~~~~a~~vf~~l~~~~-~~~~~--p~-~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~--p--~~~ty~~Ll~~~ 169 (284)
..|..++|...++..-... ..... |. ...+..+-..|...|++++|...+++.....-. + ...+|..+-..+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 4577777877776554432 22222 22 344555667789999999999999987754221 1 246788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCHHHHH-----HHHHHHHhCCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 023326 170 DKDHRADEAESLWNMILHTQTRSISKRLFS-----RMISLYDHHDMPNKIIEVFADMEELGVRP---DEDTVRRIASAFQ 241 (284)
Q Consensus 170 ~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn-----~lI~~~~~~G~~~~A~~l~~~M~~~g~~P---d~~ty~~ll~a~~ 241 (284)
...|++++|...+++.......+.....|. .++..+...|++++|..++++.......+ ....+..+...+.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 999999999999998876532221211222 23345789999999999998876543221 1335677788899
Q ss_pred HcCCHHHHHHHHHHhHHh
Q 023326 242 RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 242 ~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.++|...+++....
T Consensus 265 ~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887644
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.85 E-value=0.00016 Score=57.57 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=92.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHHHHhCC
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~lI~~~~~~G 209 (284)
+...|++++|.++++.+... ......++..+-..+...|++++|...+++..+.. ..+....+++.+-..|...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45689999999966665432 22356788888899999999999999998887632 22224567888999999999
Q ss_pred ChhHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEEL----GVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~----g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
++++|++.|++..+. |-.| ....+..+-..+...|++++|...+++..+.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999986543 3222 2346788888999999999999999887643
No 123
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.83 E-value=0.0002 Score=63.81 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CCH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQ-GAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS----ISK 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~-~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~----~~~ 195 (284)
..+..+-..|...|++++|+..|++..+..- .++ ..+|..+-..|...|++++|...+++..+..-.. ...
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3556677778999999999999998765311 112 3478888899999999999999998886543221 125
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+|..+...|...|++++|++.|++..+. +..+ ...+|..+...|.+.|++++|.+.+++..+.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999987543 2121 244788888999999999999999998876643
No 124
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.82 E-value=0.00022 Score=61.75 Aligned_cols=171 Identities=8% Similarity=-0.034 Sum_probs=117.8
Q ss_pred CChHHHHHHHHHH------hcCCchHHHHHHHHHH-HHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 023326 86 GSGQKALNLVRIV------SELPNEKHAVYGALDK-WTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK---- 153 (284)
Q Consensus 86 ~~~~~a~~l~~~~------~~~~~~a~~vf~~l~~-~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~---- 153 (284)
+....+...+... .+..++|...|...-. ........ -...|+.+-..|.+.|++++|+..|++-.+.
T Consensus 30 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 109 (307)
T 2ifu_A 30 PDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN 109 (307)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 4556666555432 3666677666655444 33332211 1457778888889999999999999886543
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 154 GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI----SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 154 g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
|-.. -..+|+.+-..|.+ |++++|...+++.++..-... ...+|+.+-..|.+.|++++|++.|++..+.-..-
T Consensus 110 g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 110 GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 2111 14577777788877 999999999988776532211 14568888899999999999999999987653333
Q ss_pred C-----HHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 229 D-----EDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 229 d-----~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+ ...+..+...+...|++++|...|++..
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3 1256666677777899999999998888
No 125
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00067 Score=55.14 Aligned_cols=125 Identities=11% Similarity=0.053 Sum_probs=94.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD 209 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G 209 (284)
+-..|.+.|++++|+..|++..+.. +-+...|..+-..+...|++++|...|++.++. .|.+..+|..+-..|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 4556899999999999999988763 226788999999999999999999999999986 4668888999988887766
Q ss_pred Ch--hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 210 MP--NKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 210 ~~--~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
+. +.+...++.. ..|+.. .+..+-.++...|++++|...|++..+...
T Consensus 137 ~~~~~~~~~~~~~~----~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 137 EQEKKKLETDYKKL----SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHH----hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 44 3455555543 244443 333344556678999999999998876543
No 126
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.80 E-value=0.00051 Score=60.99 Aligned_cols=162 Identities=12% Similarity=0.013 Sum_probs=113.9
Q ss_pred hcCCchHHHHHHHHHHHHHcc-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWE-TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----G-QGA-TMGTYDTLLLAFD 170 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~-~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g-~~p-~~~ty~~Ll~~~~ 170 (284)
.|..++|...|.......... ..+ ....+..+=..|...|++++|+..+++..+. + ..+ ...+++.+-..|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 455566666555443211111 000 1335556666799999999999999887643 1 112 2567888888899
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHH
Q 023326 171 KDHRADEAESLWNMILHTQT----RSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL----GVRPDEDTVRRIASAFQR 242 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~----~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd~~ty~~ll~a~~~ 242 (284)
..|++++|.+.+++.++..- .+....+++.|-..|...|++++|++.|++..+. +..-...++..+-..|.+
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 273 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK 273 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence 99999999999988765421 1112356888889999999999999999987651 222236688888899999
Q ss_pred cCCHHHHHHHHHHhHHhc
Q 023326 243 VGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 243 ~G~~d~a~~l~~~m~~~~ 260 (284)
.|+.++|...+++..+..
T Consensus 274 ~g~~~~A~~~~~~al~~~ 291 (378)
T 3q15_A 274 AGQTQKAFQFIEEGLDHI 291 (378)
T ss_dssp TTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 127
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.79 E-value=0.00086 Score=57.54 Aligned_cols=131 Identities=11% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
...+..+-..+.+.|++++|+..|++..+. .| +...+..|-..+.+.|++++|..++++..... |.....+....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 334445555688999999999999998876 34 56788889999999999999999999887653 42333333334
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
..+.+.|+.++|++.|++..+. .| +...+..+-..|...|++++|...|.+..+..
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 4577889999999999887765 34 56788899999999999999999999998753
No 128
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.79 E-value=0.0015 Score=53.65 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-HHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKG-QGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-RLFSRMISL 204 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~tyn~lI~~ 204 (284)
-..-..+.+.|++++|+..|+.+.+.. -.|. ...+..+-.++.+.|++++|...|+++++.+-..+.. ..|-.+-..
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 334445889999999999999998753 2222 3577778889999999999999999999875442221 133333333
Q ss_pred HH------------------hCCChhHHHHHHHHHHHCCCCCCHH-HH-----------------HHHHHHHHHcCCHHH
Q 023326 205 YD------------------HHDMPNKIIEVFADMEELGVRPDED-TV-----------------RRIASAFQRVGQDDK 248 (284)
Q Consensus 205 ~~------------------~~G~~~~A~~l~~~M~~~g~~Pd~~-ty-----------------~~ll~a~~~~G~~d~ 248 (284)
|. ..|+.++|++.|++..+.- |+.. .+ ..+-..|.+.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 33 3689999999999987653 3321 11 234456889999999
Q ss_pred HHHHHHHhHHhcCC
Q 023326 249 QKLVLKKYLSKWKY 262 (284)
Q Consensus 249 a~~l~~~m~~~~~~ 262 (284)
|...|+++.+.+.-
T Consensus 166 A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 166 VVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHCcC
Confidence 99999999988653
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=97.78 E-value=0.00036 Score=65.69 Aligned_cols=120 Identities=8% Similarity=-0.050 Sum_probs=88.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHH
Q 023326 137 RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIE 216 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~ 216 (284)
.|++++|++.|++..+.. .-+...|..+-..+.+.|++++|.+.+++.++. .|.+...|..+-..|...|++++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999887652 225788999999999999999999999999886 45588899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.|++..+.. .-+...|..+-..|.+.|++++|.+.+++..+..
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999987653 2257789999999999999999999999987653
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.75 E-value=0.00011 Score=68.27 Aligned_cols=119 Identities=7% Similarity=-0.068 Sum_probs=93.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.+++.++. .|.+...|..+-..|.+.|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 888999999999999988762 225889999999999999999999999999986 45688889999999999999999
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 214 IIEVFADMEELG-VRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 214 A~~l~~~M~~~g-~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
|++.|++..+.. -.++.......+..+.+.|++++|.+++++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999987653 234444444444448888999999999874
No 131
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.0011 Score=53.84 Aligned_cols=108 Identities=10% Similarity=0.128 Sum_probs=88.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDT----------------LLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~----------------Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
.+.+.|++++|+..|+...+. .|+ ...|.. +-..|.+.|++++|...|++.++.. |.+.
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~ 88 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--PNNV 88 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCH
Confidence 377899999999999998875 343 344555 7788899999999999999999864 6688
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~ 246 (284)
..|..+-..|...|++++|++.|++..+. .| +...|..+-..|...|..
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999998775 45 566777777777666543
No 132
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.74 E-value=4.4e-05 Score=56.17 Aligned_cols=87 Identities=10% Similarity=-0.031 Sum_probs=67.8
Q ss_pred HcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 136 KRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
..|++++|+..|++..+.+. +-+...|..|-..|.+.|++++|...|++.++.. |.+...|..+-..|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 45788899999999887641 2245678888888899999999999999998864 5578888889999999999999
Q ss_pred HHHHHHHHHHC
Q 023326 214 IIEVFADMEEL 224 (284)
Q Consensus 214 A~~l~~~M~~~ 224 (284)
|++.|++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 133
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.73 E-value=0.00036 Score=60.40 Aligned_cols=150 Identities=7% Similarity=-0.031 Sum_probs=102.9
Q ss_pred hcCCchHHHHHHHHHH-HHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 023326 99 SELPNEKHAVYGALDK-WTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGA-TMGTYDTLLLAFDK 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~-~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p-~~~ty~~Ll~~~~~ 171 (284)
.+..++|...|+..-. +...+... -..++..+=..|.+ |++++|+..|++-.+. |-.. ...+|+.+-..|.+
T Consensus 89 ~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 167 (307)
T 2ifu_A 89 LQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR 167 (307)
T ss_dssp TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 3677777777765444 33332221 13456666677777 9999999999987653 2111 14678888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC---H---HHHHHHHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD---E---DTVRRIASAFQ 241 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd---~---~ty~~ll~a~~ 241 (284)
.|++++|...|++.++......+ ...|..+...|...|++++|+..|++.. . .|+ . .....++.++
T Consensus 168 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~- 243 (307)
T 2ifu_A 168 QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY- 243 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-
Confidence 99999999999998764322111 2357777788888899999999999988 4 442 2 2455566666
Q ss_pred HcCCHHHHHHHH
Q 023326 242 RVGQDDKQKLVL 253 (284)
Q Consensus 242 ~~G~~d~a~~l~ 253 (284)
..|+.+...++.
T Consensus 244 ~~~d~~~~~~~~ 255 (307)
T 2ifu_A 244 DEQDEEQLLRVC 255 (307)
T ss_dssp HTTCHHHHHHHT
T ss_pred HhcCHHHHHHHH
Confidence 678887776643
No 134
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.72 E-value=0.00054 Score=58.24 Aligned_cols=124 Identities=12% Similarity=0.039 Sum_probs=97.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCHHHHHHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGAT-----MGTYDTLLLAFDKDHRADEAESLWNMILHT----QTRSISKRLFSRMIS 203 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----~~~~~~~~tyn~lI~ 203 (284)
.+.+.|++++|+.+|++..+.. |+ ...|..+-..+...|++++|..++++..+. +..+....+|..+..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 4888999999999999998863 33 467888889999999999999999887543 212223567899999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGV-RPD----EDTVRRIASAFQRVGQ--------------------DDKQKLVLKKYLS 258 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~-~Pd----~~ty~~ll~a~~~~G~--------------------~d~a~~l~~~m~~ 258 (284)
.|...|++++|++.|++..+..- .++ ..++..+...|...|+ +++|.+.+++..+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~ 171 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS 171 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999998654311 122 3478888889999999 9999999887654
No 135
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.72 E-value=0.0014 Score=61.04 Aligned_cols=132 Identities=7% Similarity=0.055 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSR 200 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~ 200 (284)
+...+..+...+.+.|++++|..+|+...+. .|+ ...|..+...+.+.|++++|.++|+...+.. |.+...|-.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~ 395 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT 395 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHH
Confidence 4677778888888889999999999988874 454 2478888888888888999999988887753 223332322
Q ss_pred HH-HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 201 MI-SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 201 lI-~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.. -.|...|+.++|.++|++..+. .| +...|..++..+.+.|+.++|..+|++.....
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 1234688999999999876654 35 46778888888888999999999999887764
No 136
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.72 E-value=0.00023 Score=63.34 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=97.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-M----GTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLFSRMISL 204 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~tyn~lI~~ 204 (284)
+.+.|++++|+..|++..+.+ |+ . ..|..+-..|...|++++|...+++.++.. ..+....+|..+-..
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 889999999999999998863 33 2 578888888999999999999998876542 123345678999999
Q ss_pred HHhCCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHhHH
Q 023326 205 YDHHDMPNKIIEVFADMEEL----GVRP-DEDTVRRIASAFQRVGQ-----------------DDKQKLVLKKYLS 258 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~----g~~P-d~~ty~~ll~a~~~~G~-----------------~d~a~~l~~~m~~ 258 (284)
|...|++++|++.|++..+. +-.| ....+..+-..|...|+ +++|.+.+++..+
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999986543 2222 34478888889999999 9999998887654
No 137
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.71 E-value=0.0011 Score=48.67 Aligned_cols=91 Identities=9% Similarity=-0.055 Sum_probs=70.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLSKGQ-GAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLYD 206 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~g~-~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~~ 206 (284)
..+.+.|++++|+..|+...+..- .+. ...+..+-..+.+.|++++|...++..++.+ |.+ ...+..+-..|.
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH
Confidence 347788999999999999887531 111 1466677778889999999999999988864 334 566788888899
Q ss_pred hCCChhHHHHHHHHHHHC
Q 023326 207 HHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~ 224 (284)
+.|++++|++.|++....
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988765
No 138
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.71 E-value=0.0013 Score=49.14 Aligned_cols=100 Identities=14% Similarity=0.027 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHH
Q 023326 157 ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---KRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDT 232 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~t 232 (284)
.+...+..+-..+.+.|++++|..+|++.++.. |.+ ...|..+-..|...|++++|++.|++..+. .| +...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 357788888999999999999999999998753 433 677899999999999999999999998765 34 5778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
+..+-..|...|++++|.+.|++..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 8888899999999999999999887653
No 139
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.71 E-value=0.00028 Score=68.37 Aligned_cols=130 Identities=10% Similarity=-0.056 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...+..+-..|.+.|++++|++.|++..+.. .-+...|..+-..+.+.|++++|.+.|++.++.. |.+...|..+-
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg 508 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALA 508 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHH
Confidence 45566666777889999999999999888752 2256788888888899999999999999988863 55777788888
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..|.+.|++++ ++.|++..+. .| +...|..+-.+|.+.|++++|.+.|++..+
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 99999999999 9999887665 33 566788888889999999999998887653
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.68 E-value=0.00096 Score=49.83 Aligned_cols=88 Identities=7% Similarity=0.081 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCC----HHHHHHHHHHHHh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR-SIS----KRLFSRMISLYDH 207 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~----~~tyn~lI~~~~~ 207 (284)
.|.+.|++++|+..|++.++.. +-+...|+.+-.+|.+.|++++|.+.+++.++..-. +.+ ..+|..+-..|..
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~ 95 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK 95 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence 4445555555555555544431 113444555555555555555555555554432111 001 1234444444555
Q ss_pred CCChhHHHHHHHHH
Q 023326 208 HDMPNKIIEVFADM 221 (284)
Q Consensus 208 ~G~~~~A~~l~~~M 221 (284)
.|++++|++.|++-
T Consensus 96 ~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 96 QNDLSLAVQWFHRS 109 (127)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 55555555555543
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.68 E-value=0.0011 Score=49.55 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC--CCCC----HHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG--VRPD----EDT 232 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g--~~Pd----~~t 232 (284)
...+..|=..+.+.|++++|...|++.++. .|.+...|+-+-..|.+.|++++|++.|++..+.. ..++ ..+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 356677788899999999999999999886 46688999999999999999999999999876532 2222 246
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 233 VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 233 y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
|..+-.++...|++++|.+.|++-.+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 778888999999999999999887654
No 142
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.68 E-value=0.0016 Score=49.68 Aligned_cols=99 Identities=9% Similarity=-0.014 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIAS 238 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~ 238 (284)
...|..+-..+...|++++|...++..++.. |.+..+|..+...|...|++++|++.|++..+.. ..+...|..+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~ 89 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3567777788889999999999999998864 5578889999999999999999999999987653 235778888899
Q ss_pred HHHHcCCHHHHHHHHHHhHHhc
Q 023326 239 AFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+...|++++|.+.+++..+..
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999988653
No 143
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.67 E-value=0.0013 Score=50.65 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=96.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
+...|++++|+..|...... .|+ ...+-.|-..|.+.|++++|.+.|++.++. .|.+..+|..+-..|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 55668899999988876543 332 345556777899999999999999999986 4668999999999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHhHH
Q 023326 213 KIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLV-LKKYLS 258 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l-~~~m~~ 258 (284)
+|+..|++..+. .| +...|..+-..|.+.|+.+++.+. +++..+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999998765 45 567888899999999998876654 466554
No 144
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.66 E-value=0.00053 Score=50.85 Aligned_cols=87 Identities=8% Similarity=-0.036 Sum_probs=59.2
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK 213 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~ 213 (284)
+.+.|++++|+..|+...+.. +-+...|..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++
T Consensus 27 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 27 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 667777777777777766542 124566666666677777777777777777665 34466667777777777777777
Q ss_pred HHHHHHHHHH
Q 023326 214 IIEVFADMEE 223 (284)
Q Consensus 214 A~~l~~~M~~ 223 (284)
|++.|++..+
T Consensus 104 A~~~~~~al~ 113 (121)
T 1hxi_A 104 ALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 145
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.65 E-value=0.0013 Score=60.51 Aligned_cols=125 Identities=11% Similarity=0.119 Sum_probs=98.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCC-CCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQ-GAT-------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~-~p~-------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.|.+.|++++|+..|++.++..- .++ ...|..+-.+|.+.|++++|...+++.++.. |.+...|
T Consensus 277 ~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~ 354 (457)
T 1kt0_A 277 VYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SANEKGL 354 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHH
Confidence 39999999999999999886421 111 5788999999999999999999999999864 5588899
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHhHHhcC
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQK-LVLKKYLSKWK 261 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~-~l~~~m~~~~~ 261 (284)
..+-.+|...|++++|+..|++..+. .| +...+..+-..+.+.|+.+++. .++..|..+..
T Consensus 355 ~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 355 YRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999998765 45 3447788888888999888766 46666765543
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.65 E-value=0.0014 Score=51.22 Aligned_cols=124 Identities=7% Similarity=0.006 Sum_probs=99.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCCCh-
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHDMP- 211 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G~~- 211 (284)
+...|++++|+..|+...+.. +.+...|..+-..|...|++++|...|++.++.. |.+...|..+... |...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 567788999999999887653 3367889999999999999999999999998864 4577788888888 8899998
Q ss_pred -hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 212 -NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 212 -~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++|++.|++..+..- -+...+..+...|...|++++|...|++..+...
T Consensus 97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 999999999877632 2467788888999999999999999999886644
No 147
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.63 E-value=0.00084 Score=59.08 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=100.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCCHHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TRSISKRLF 198 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~ty 198 (284)
+...=..+.+.|++++|+..|++..+.+- .+ ...|..+-..+...|++++|...+++..+.. -.+....+|
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33344458899999999999999988632 12 3678888899999999999999998875432 122235678
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGV-RPD----EDTVRRIASAFQRVGQ--------------------DDKQKLVL 253 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~-~Pd----~~ty~~ll~a~~~~G~--------------------~d~a~~l~ 253 (284)
..+-..|...|++++|++.+++..+..- .++ ..++..+-..|...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8899999999999999999998654311 122 4478888889999999 99999998
Q ss_pred HHhHHh
Q 023326 254 KKYLSK 259 (284)
Q Consensus 254 ~~m~~~ 259 (284)
++..+.
T Consensus 171 ~~al~~ 176 (406)
T 3sf4_A 171 EENLSL 176 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.63 E-value=0.00091 Score=59.32 Aligned_cols=159 Identities=11% Similarity=-0.033 Sum_probs=108.4
Q ss_pred hcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHh
Q 023326 99 SELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQ-GATMGTYDTLLLAFDK 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~-~p~~~ty~~Ll~~~~~ 171 (284)
.|..++|...|...-.. ......+ -..++..+=..|...|++++|+..|++..+. +. .-...++..+-..+.+
T Consensus 197 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 197 LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 35566666665443332 1111111 1235666667788999999999999887762 33 2345678888888999
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcC
Q 023326 172 DHRADEAESLWNMILHTQTR---SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRPDE-DTVRRIASAFQRVG 244 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~---~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~Pd~-~ty~~ll~a~~~~G 244 (284)
.|++++|...+++..+..-. +.....++.+-..|...|+ +++|+.++++. +..|+. ..+..+-..|...|
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g 353 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERK 353 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCC
Confidence 99999999998887654211 1123336778888888888 77777777765 444443 36777888999999
Q ss_pred CHHHHHHHHHHhHHhc
Q 023326 245 QDDKQKLVLKKYLSKW 260 (284)
Q Consensus 245 ~~d~a~~l~~~m~~~~ 260 (284)
++++|.+.+++..+-.
T Consensus 354 ~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 354 NFQKASAYFLKVEQVR 369 (383)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999887543
No 149
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.63 E-value=0.002 Score=47.21 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=77.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CC-HHHHHHHHHH
Q 023326 165 LLLAFDKDHRADEAESLWNMILHTQTRSISK---RLFSRMISLYDHHDMPNKIIEVFADMEELGVR-PD-EDTVRRIASA 239 (284)
Q Consensus 165 Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~---~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~-Pd-~~ty~~ll~a 239 (284)
+-..+.+.|++++|...|+..++..-. +. ..+..+-..|.+.|++++|++.|++.....-. +. ...+..+-..
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 445677899999999999999886432 33 56788889999999999999999998775321 11 5667888889
Q ss_pred HHHcCCHHHHHHHHHHhHHhcC
Q 023326 240 FQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 240 ~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
|...|+.++|...|++..+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHcCCHHHHHHHHHHHHHHCC
Confidence 9999999999999999988764
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.60 E-value=0.0011 Score=49.17 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 023326 162 YDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAF 240 (284)
Q Consensus 162 y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~ 240 (284)
+..+-..+.+.|++++|...+++.++. .|.+...|..+-..|.+.|++++|+..|++..+. .| +...+..+-..|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 334556678899999999999999986 4668888999999999999999999999997765 34 566888888999
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 151
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.55 E-value=0.0035 Score=55.46 Aligned_cols=157 Identities=11% Similarity=0.034 Sum_probs=104.6
Q ss_pred hcCCchHHHHHHHHHHH-HHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhc
Q 023326 99 SELPNEKHAVYGALDKW-TAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK----GQGATMGTYDTLLLAFDKD 172 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~-~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~----g~~p~~~ty~~Ll~~~~~~ 172 (284)
.|..++|...|...-.. ......+ ...++..+=..|...|++++|++.|++..+. +......++..+-..+.+.
T Consensus 195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 274 (378)
T 3q15_A 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKA 274 (378)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHC
Confidence 45555666555433322 1111111 1234556666788889999999999887651 2222367788888888899
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC
Q 023326 173 HRADEAESLWNMILHTQTR---SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQ 245 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~---~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~ 245 (284)
|+.++|...+++..+..-. +.....++.+-..|...|+ +++|+..+++ .+..|+.. .+..+-..|...|+
T Consensus 275 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~ 351 (378)
T 3q15_A 275 GQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCH 351 (378)
T ss_dssp TCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCC
Confidence 9999999999888765332 2234456777777778888 7777777766 33344333 56677788999999
Q ss_pred HHHHHHHHHHhHH
Q 023326 246 DDKQKLVLKKYLS 258 (284)
Q Consensus 246 ~d~a~~l~~~m~~ 258 (284)
+++|.+.|++..+
T Consensus 352 ~~~A~~~~~~al~ 364 (378)
T 3q15_A 352 FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987764
No 152
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.51 E-value=0.0013 Score=58.93 Aligned_cols=114 Identities=11% Similarity=0.053 Sum_probs=92.3
Q ss_pred HHHcCCHHHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK--------------GQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~--------------g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
|.+.|++++|+..|++.++. ...| +...|..+-..|.+.|++++|...+++.++. .|.+...|
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~ 310 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKAL 310 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHH
Confidence 99999999999999987761 0222 4578888889999999999999999999985 45688889
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKL 251 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~ 251 (284)
..+-.+|.+.|++++|++.|++..+. .| +...+..+-..+...++.+++.+
T Consensus 311 ~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 311 YRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999997765 34 55566666677777777666544
No 153
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.49 E-value=0.0028 Score=54.16 Aligned_cols=95 Identities=8% Similarity=-0.042 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+..+-..+.+.|++++|+..|+...+. .| +...|..+-..|.+.|++++|...+++.++. .|.+...|..+-.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 34444555688999999999999998875 34 6788888889999999999999999998875 4668888999999
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~ 223 (284)
+|.+.|++++|++.|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987644
No 154
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.49 E-value=0.0017 Score=57.13 Aligned_cols=134 Identities=10% Similarity=-0.037 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--CCC
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKG-QGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ----TR--SIS 194 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~----~~--~~~ 194 (284)
.+..+-..|...|++++|...+++..... -.++ ..+++.+-..+...|++++|...+++..+.. .. |..
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 34455566888999999999999876531 1122 2346667777889999999999998886542 21 223
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDHHDMPNKIIEVFADMEELGVR--P--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~--P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
...+..+-..|...|++++|.+.+++..+..-. + ...+|..+-..+...|++++|...+++....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455777888999999999999999987653221 1 2457888888899999999999999988754
No 155
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.46 E-value=0.00039 Score=50.91 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=70.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 171 KDHRADEAESLWNMILHTQTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 171 ~~g~~~~A~~l~~~m~~~~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
..|++++|...|++.++.+.. |.+...|..+-..|.+.|++++|++.|++..+..-. +...+..+-.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 468899999999999986422 446778999999999999999999999998776322 467888889999999999999
Q ss_pred HHHHHHhHHh
Q 023326 250 KLVLKKYLSK 259 (284)
Q Consensus 250 ~~l~~~m~~~ 259 (284)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.44 E-value=0.004 Score=53.11 Aligned_cols=98 Identities=9% Similarity=0.024 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-CHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP-DEDTVRRI 236 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~~l 236 (284)
+...+..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++|++.+++..+. .| +...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567788888899999999999999999986 4558888999999999999999999999987654 44 56788888
Q ss_pred HHHHHHcCCHHHHHHHHHHhHHh
Q 023326 237 ASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 237 l~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
-.+|...|++++|.+.|.+..+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999887643
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.40 E-value=0.0044 Score=47.74 Aligned_cols=93 Identities=12% Similarity=0.064 Sum_probs=77.6
Q ss_pred HHHcCCHHHHHHHHHHHHHc-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSK-------GQ---------GA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~-------g~---------~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
+.+.|++++|+..|..-++. .- .| +...|..+-.+|.+.|++++|...++..++. .|.+..
T Consensus 21 ~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 98 (162)
T 3rkv_A 21 LFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR--EETNEK 98 (162)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CCcchH
Confidence 99999999999999987764 00 12 3467888888999999999999999999986 466888
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
.|..+-.+|...|++++|++.|++..+. .|+.
T Consensus 99 a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 99 ALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 9999999999999999999999987665 4543
No 158
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.35 E-value=0.0014 Score=51.48 Aligned_cols=124 Identities=12% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-HHhCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISL-YDHHD 209 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~-~~~~G 209 (284)
-..+.+.|++++|+..|++..+.. +-+...+..+-..+.+.|++++|...++...... | +...+..+... +.+.+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--Q-DNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-ChHHHHHHHHHHHHhhc
Confidence 345889999999999999876542 2256788889999999999999999999887643 4 44433332211 22334
Q ss_pred ChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 210 MPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
...+|++.|++..+. .| +...+..+-..+...|++++|...|++..+..
T Consensus 89 ~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 138 (176)
T 2r5s_A 89 AESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVN 138 (176)
T ss_dssp TSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence 445678888887654 45 57788889999999999999999999987653
No 159
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00022 Score=50.98 Aligned_cols=65 Identities=8% Similarity=-0.049 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
+...|..+-..+.+.|++++|...|++.++. .|.+...|..+-..|.+.|++++|++.|++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456666777777788888888888877765 3446777777788888888888888888876654
No 160
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.31 E-value=0.0012 Score=61.62 Aligned_cols=126 Identities=12% Similarity=-0.067 Sum_probs=93.4
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFP----LIAAAKALRILRKRGQWLRVIQVAKWMLSK-----G-QGAT-MGTYDTLLL 167 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~----~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----g-~~p~-~~ty~~Ll~ 167 (284)
.|..++|+.+++..-+......+|+ ..+++.+...|...|++++|+.++++.++- | -.|+ ..+|+.|-.
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3566677777755544333334443 567889999999999999999999987642 2 2333 478999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-----CCC-CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 168 AFDKDHRADEAESLWNMILHT-----QTR-SISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~-----~~~-~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
.|...|++++|+.++++-.+. |-. |....+.+.+-.++...|++++|+.+|+++++.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998776432 222 323455778888999999999999999998763
No 161
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.26 E-value=0.016 Score=60.01 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
+...|..++..+.+.|++++|++.|..-++.. ++....+.+..+|++.+++++...+. ..++...|..+-
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI--------~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI--------NGPNNAHIQQVG 1202 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--------hCCCHHHHHHHH
Confidence 34444455555555555555555555433322 22222223555555555554322221 112333444555
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 203 SLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
..|-..|++++|..+|... ..|..+...|++.|+++.|.+.+.+-
T Consensus 1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 5555566666666666652 36666666777777777666666544
No 162
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.26 E-value=0.018 Score=46.76 Aligned_cols=149 Identities=12% Similarity=-0.047 Sum_probs=98.6
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRG----QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK--- 171 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g----~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~--- 171 (284)
.+..++|...|....+ . -+...+..+=..|.. + +.++|+..|+.-.+.| +...+..|-..|..
T Consensus 31 ~~~~~~A~~~~~~a~~---~---g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g 100 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAA---Q---GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQA 100 (212)
T ss_dssp HTCHHHHHHHHHHHHH---T---TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGG
T ss_pred CCCHHHHHHHHHHHHH---c---CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 4555555555554321 1 244555555445555 6 7888888888887765 45666666666665
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-
Q 023326 172 -DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV-G- 244 (284)
Q Consensus 172 -~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~-G- 244 (284)
.+++++|..+|++..+.+........+..|-..|.. .+++++|++.|++-.+.+ .+...+..|-..|... |
T Consensus 101 ~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 101 GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTT
T ss_pred CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 778888888888887764310125667777777777 778888888888877663 3444566666666554 3
Q ss_pred ----CHHHHHHHHHHhHHh
Q 023326 245 ----QDDKQKLVLKKYLSK 259 (284)
Q Consensus 245 ----~~d~a~~l~~~m~~~ 259 (284)
+.++|.+.|++-.+.
T Consensus 179 ~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc
Confidence 788888888877665
No 163
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.20 E-value=0.0044 Score=48.65 Aligned_cols=104 Identities=14% Similarity=0.085 Sum_probs=78.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQG-A-----TM-----GTYDTLLLAFDKDHRADEAESLWNMILHT-----QTRSISKRL 197 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~-p-----~~-----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~~~~~~~t 197 (284)
+.+.|++++|+..|+.-++..-. | +. ..|+.+-.++.+.|++++|...++.-++. .+.|.+...
T Consensus 21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A 100 (159)
T 2hr2_A 21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 100 (159)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHH
Confidence 88999999999999987765211 1 23 38888888899999999999999888874 124656777
Q ss_pred H----HHHHHHHHhCCChhHHHHHHHHHHH-----CCCCCCHHHHHHHH
Q 023326 198 F----SRMISLYDHHDMPNKIIEVFADMEE-----LGVRPDEDTVRRIA 237 (284)
Q Consensus 198 y----n~lI~~~~~~G~~~~A~~l~~~M~~-----~g~~Pd~~ty~~ll 237 (284)
| .-.-.++...|++++|++.|++-.+ .|+.+......-.+
T Consensus 101 ~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 101 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred HHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 8 8888899999999999999987643 56666555444444
No 164
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.19 E-value=0.0017 Score=62.78 Aligned_cols=120 Identities=9% Similarity=-0.045 Sum_probs=101.0
Q ss_pred HHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 135 RKRGQWLRVIQVAKWMLS-------KGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~-------~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
...|++++|++.|++..+ .....+...|..+-..+.+.|++++|...+++.++. .|.+...|..+-..|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 678999999999999871 112335678888888999999999999999999986 35688899999999999
Q ss_pred CCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 208 HDMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.|++++|++.|++..+. .| +...|..+-.+|.+.|++++ .+.|++..+.
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 99999999999998765 34 56678888899999999999 8888887754
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.16 E-value=0.0069 Score=45.29 Aligned_cols=99 Identities=12% Similarity=-0.040 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCCH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKG----QGA-TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----SISK 195 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g----~~p-~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~ 195 (284)
..+..+-..|...|++++|+..|++..+.. -.+ ....+..+-..+...|++++|...+++.++.... +...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 356667777999999999999999876531 111 1457778888889999999999999887654211 1124
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
.++..+-..|...|++++|++.+++..+
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5678888999999999999999988653
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.16 E-value=0.011 Score=46.94 Aligned_cols=124 Identities=11% Similarity=-0.028 Sum_probs=88.3
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---C-----------HHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI---S-----------KRLFS 199 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~---~-----------~~tyn 199 (284)
....|.+++|.+.++.-.+.. .-....+..+-..+.+.|++++|..+|++.++..-..+ . ...|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 445556666666554322210 11245677777788899999999999999987543311 1 26788
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+-..|.+.|++++|++.+++..+.. ..+...|..+-.+|...|++++|.+.|++..+.
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 89999999999999999999987652 236778888999999999999999999988765
No 167
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.14 E-value=0.0016 Score=57.39 Aligned_cols=120 Identities=17% Similarity=0.088 Sum_probs=73.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMG------------------TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK 195 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~------------------ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 195 (284)
|.+.|++++|+..|++.++. .|+.. .|..+-..|.+.|++++|...++..++.. |.+.
T Consensus 189 ~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~ 264 (338)
T 2if4_A 189 LFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNP 264 (338)
T ss_dssp TCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCH
T ss_pred HHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH
Confidence 77889999999999987754 34433 78888888999999999999999998864 5588
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHH-HHHcCCHHHHHHHHHHhHHh
Q 023326 196 RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASA-FQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 196 ~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a-~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|..+-.+|...|++++|++.|++..+. .|+.. .+..|... ....+..+++.++|..|...
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 88999999999999999999999986543 45433 33333333 23456667778888777644
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.12 E-value=0.0073 Score=46.44 Aligned_cols=100 Identities=15% Similarity=0.043 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------CC--------CCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHT--------QT--------RSISKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~--------~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+..+...-..+.+.|++++|...|++.++. .- .|.+...|..+-.+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777888999999999999988775 00 23345779999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 225778999999999999999999999987755
No 169
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.09 E-value=0.17 Score=46.27 Aligned_cols=127 Identities=6% Similarity=-0.094 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRKR-----GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~-----g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+-..|... ++.++|+..|+...+.| +...+..|-..|.+.| +.++|.++|+...+.+ +
T Consensus 290 ~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~ 362 (490)
T 2xm6_A 290 NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----E 362 (490)
T ss_dssp CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----C
Confidence 344555555556665 78888888888877765 3455566666665545 6778888888777752 5
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..|-..|.. .+++++|++.|++-.+.| +...+..|-..|.+ .++.++|.+.|++..+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5567777777777 788888888888887766 46666777777776 78888888888877654
No 170
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.08 E-value=0.076 Score=48.58 Aligned_cols=127 Identities=7% Similarity=0.016 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCC
Q 023326 123 PLIAAAKALRILRK----RGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSIS 194 (284)
Q Consensus 123 ~~~~y~~~i~~~~~----~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~ 194 (284)
+...+..+=..|.. .+++++|+..|+.-.+.| +...+..|-..|.. .++.++|.+.|+...+.+ +
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~ 182 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----N 182 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 45555555556666 678888888888877765 45566666666665 678888888888877753 5
Q ss_pred HHHHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 195 KRLFSRMISLYDH----HDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 195 ~~tyn~lI~~~~~----~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
...+..|-..|.. .++.++|++.|++-.+.| +...+..|-..|.. .++.++|.+.|++..+.
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 5667777777777 788888888888877765 55666667777765 78888888888877654
No 171
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.04 E-value=0.018 Score=55.67 Aligned_cols=133 Identities=5% Similarity=0.011 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSK-G-QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~-g-~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.|...+....+.|..+.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+..++.. |.+...|...+.
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~ 512 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKYF--ATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHHH--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHC--CCchHHHHHHHH
Confidence 5677777788889999999999998876 3 3444555444444222 356999999999999873 447777899999
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRP--DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~P--d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
-....|+.+.|..+|+......-.+ ....|...+.--.+.|..+.+.++.++|.+.+.
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999876654322 334788888888899999999999999987754
No 172
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.04 E-value=0.0036 Score=57.25 Aligned_cols=92 Identities=12% Similarity=0.063 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------CCCHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTR------SISKR 196 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~------~~~~~ 196 (284)
.+..+.+.|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|+.++.+.++.... |....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345577888899999998887753 13343 468888888888889999998888877543211 32345
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+|+.|-..|...|++++|+.++++-
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6888888899999999998888874
No 173
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.03 E-value=0.011 Score=51.73 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---------------KRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---------------~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+...|..+-..|.+.|++++|...|++.++.. |.+ ...|..+-..|.+.|++++|++.|++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678888888999999999999999998874 324 5789999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 223 ELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 223 ~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+.. .-+...|..+-.+|...|++++|...|++..+.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 753 226778999999999999999999999988765
No 174
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.01 E-value=0.0054 Score=56.08 Aligned_cols=97 Identities=6% Similarity=0.038 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C---CCHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----CC-CCCCH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQTR---S---ISKRLFSRMISLYDHHDMPNKIIEVFADMEE-----LG-VRPDE 230 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~---~---~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~-----~g-~~Pd~ 230 (284)
...+..+.+.|++++|..++++..+.... + ....+++.|...|...|++++|+.++++..+ .| -.|++
T Consensus 291 l~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 291 LKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34456677889999999999998865332 2 2346799999999999999999999998643 45 44665
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 231 D-TVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 231 ~-ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
. +|+.|-..|...|++++|..++++..+-
T Consensus 371 a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 371 GVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5 8999999999999999999998876543
No 175
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.95 E-value=0.078 Score=55.06 Aligned_cols=59 Identities=3% Similarity=-0.183 Sum_probs=36.1
Q ss_pred HccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 023326 117 AWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNM 184 (284)
Q Consensus 117 ~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~ 184 (284)
..+..++...|..+=..|...|++++|..+|... ..|..+...|.+.|++++|.+.+.+
T Consensus 1188 ~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarK 1246 (1630)
T 1xi4_A 1188 EFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARK 1246 (1630)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3345555555555555566666666666666663 3566666666666666666666543
No 176
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.92 E-value=0.0031 Score=57.75 Aligned_cols=87 Identities=5% Similarity=-0.015 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCC-CCCCHH-HHHHHHH
Q 023326 172 DHRADEAESLWNMILHTQTR------SISKRLFSRMISLYDHHDMPNKIIEVFADME-----ELG-VRPDED-TVRRIAS 238 (284)
Q Consensus 172 ~g~~~~A~~l~~~m~~~~~~------~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g-~~Pd~~-ty~~ll~ 238 (284)
.|++++|..++++.++.... |....++|.|...|...|++++|+.++++.. ..| -.|++. +|+.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57889999998877653222 2234678999999999999999999999864 345 456665 7999999
Q ss_pred HHHHcCCHHHHHHHHHHhHH
Q 023326 239 AFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 239 a~~~~G~~d~a~~l~~~m~~ 258 (284)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 177
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=96.90 E-value=0.019 Score=50.01 Aligned_cols=125 Identities=7% Similarity=0.088 Sum_probs=99.1
Q ss_pred HHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 134 LRKRGQWL--RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR------ADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 134 ~~~~g~~~--~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
+.+.|.++ ++++.++.|.+... -|...|+---..+.+.+. ++++.+.++.++... |.|...|+-+-..+
T Consensus 154 l~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~--p~n~SaW~y~~~ll 230 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC--PQNPSTWNYLLGIH 230 (306)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC--CCCccHHHHHHHHH
Confidence 55667777 99999999998754 377788877666767666 889999999999874 55999999999999
Q ss_pred HhCCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 206 DHHDMPNK-IIEVFADMEELG--VRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 206 ~~~G~~~~-A~~l~~~M~~~g--~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
.+.|+..+ +.+...+..+.+ -..+...+..+.+.|.+.|+.++|.++++.+.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D 289 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN 289 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence 99998655 445666654433 134778899999999999999999999999987644
No 178
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.90 E-value=0.013 Score=42.19 Aligned_cols=80 Identities=11% Similarity=0.012 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 142 RVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 142 ~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
+|+..|++..+.. +-+...+..+-..|...|++++|...+++.++.. |.+...|..+-..|...|++++|+..|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4667777766542 2356788888888899999999999999988764 557778888999999999999999998886
Q ss_pred HHC
Q 023326 222 EEL 224 (284)
Q Consensus 222 ~~~ 224 (284)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 553
No 179
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.86 E-value=0.0095 Score=42.86 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKY 256 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m 256 (284)
.|...+++.++. .|.+...|..+-..|.+.|++++|++.|++..+.. .-+...|..+-..|...|+.++|...|++.
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466777777765 45688889999999999999999999999987653 225668888899999999999999999987
Q ss_pred HHh
Q 023326 257 LSK 259 (284)
Q Consensus 257 ~~~ 259 (284)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
No 180
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0021 Score=45.64 Aligned_cols=93 Identities=12% Similarity=0.020 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC------HHHH
Q 023326 125 IAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS------KRLF 198 (284)
Q Consensus 125 ~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~------~~ty 198 (284)
..+..+-..+.+.|++++|+..|++..+.. +.+...|..+-..+.+.|++++|...+++.++.. |.+ ...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHHH
Confidence 344444555889999999999999988763 2367888899999999999999999999998753 434 5556
Q ss_pred HHHHHHHHhCCChhHHHHHHHH
Q 023326 199 SRMISLYDHHDMPNKIIEVFAD 220 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~ 220 (284)
..+-.++...|+.++|++.|++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6666677777777766655443
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.022 Score=50.68 Aligned_cols=133 Identities=11% Similarity=0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHH-HHhcCCHHHHHHHHHHHHH----cCCCCCCHHH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSK-GQGATMGT---YDTLLLA-FDKDHRADEAESLWNMILH----TQTRSISKRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~-g~~p~~~t---y~~Ll~~-~~~~g~~~~A~~l~~~m~~----~~~~~~~~~t 197 (284)
+..+...|.+.|++++|.+.+....+. +..++..+ ...++.. +...|+.++|..++.+... .+..+.-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 456677799999999999999987653 22233322 2222332 3446889999999887753 3333323567
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEEL----GVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~----g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..|...|-..|++++|.+++++.... +-.+. ...|..+...|...|++++|..++++....
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 899999999999999999999986542 22333 347888889999999999999999877643
No 182
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0036 Score=57.32 Aligned_cols=87 Identities=6% Similarity=-0.083 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----C-CCCHHHHHHHH
Q 023326 136 KRGQWLRVIQVAKWMLSK---GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQT-----R-SISKRLFSRMI 202 (284)
Q Consensus 136 ~~g~~~~A~~l~~~M~~~---g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-----~-~~~~~tyn~lI 202 (284)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++... . |....+||-|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999986642 24444 47899999999999999999999988864321 1 33456799999
Q ss_pred HHHHhCCChhHHHHHHHHHH
Q 023326 203 SLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 203 ~~~~~~G~~~~A~~l~~~M~ 222 (284)
..|...|++++|+.++++-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHH
Confidence 99999999999999999753
No 183
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.77 E-value=0.028 Score=37.91 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
..+..+-..+.+.|++++|...+++.++.. |.+...|..+-..|.+.|++++|++.|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555555666666666666666665542 335555666666666666666666666665543
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.74 E-value=0.0088 Score=42.30 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 158 TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
+...+..+-..|.+.|++++|...|++.++.. |.+...|..+-..|...|++++|++.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677777778888888888888888888764 44666788888888888888888888887543
No 185
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.73 E-value=0.043 Score=42.94 Aligned_cols=100 Identities=10% Similarity=-0.051 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CHH-----HHHHHHHHHHhCCChhHHHHHHHHHHHC-----
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-----SKR-----LFSRMISLYDHHDMPNKIIEVFADMEEL----- 224 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-----~~~-----tyn~lI~~~~~~G~~~~A~~l~~~M~~~----- 224 (284)
..+..+-..+.+.|++++|...|++.++..-..+ +.. .|+-+-.++.+.|++++|+..+++-.+.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3455555667889999999999999887532200 333 7999999999999999999999987663
Q ss_pred CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 225 GVRPDED-TV----RRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 225 g~~Pd~~-ty----~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.||.. .| ...-.++...|++++|...|++..+-
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2478654 67 78888999999999999999987643
No 186
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.70 E-value=0.073 Score=47.84 Aligned_cols=134 Identities=12% Similarity=-0.049 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-------------------cCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDK-------------------DHRADEAESL 181 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~-------------------~g~~~~A~~l 181 (284)
.+...+..+-..|.+.|++++|+..|++..+. .| +..+|..|-..|.. .+..+.|...
T Consensus 245 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 322 (472)
T 4g1t_A 245 GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322 (472)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 34556667777788999999999999888765 34 34555555444322 1235566777
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHH-HHHHHcCCHHHHHHHHHHhHH
Q 023326 182 WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIA-SAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 182 ~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll-~a~~~~G~~d~a~~l~~~m~~ 258 (284)
++...+.. |.+..+|..+-..|...|++++|++.|++..+....|... .+..+. ..+...|+.++|...|.+..+
T Consensus 323 ~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 323 LKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77766653 3355568889999999999999999999987765443322 122222 234578999999998887664
Q ss_pred h
Q 023326 259 K 259 (284)
Q Consensus 259 ~ 259 (284)
-
T Consensus 401 i 401 (472)
T 4g1t_A 401 I 401 (472)
T ss_dssp S
T ss_pred c
Confidence 3
No 187
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.68 E-value=0.065 Score=48.21 Aligned_cols=163 Identities=9% Similarity=0.058 Sum_probs=103.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH-HHc---cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHH
Q 023326 93 NLVRIVSELPNEKHAVYGALDKW-TAW---ETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSK-----G-QGA-TMG 160 (284)
Q Consensus 93 ~l~~~~~~~~~~a~~vf~~l~~~-~~~---~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~-----g-~~p-~~~ 160 (284)
..+....|..++|...|+.-.+. ... ...| ..++|+.+=..|...|++++|+..|++..+. + ..+ ...
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 34445568888888777654432 111 1123 4677888888888999999999988876542 1 122 345
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH---HHhCCChhHHHHHHHHHHHCCCCC-CHHHHH
Q 023326 161 TYDTLLLAFDKD--HRADEAESLWNMILHTQTRSISKRLFSRMISL---YDHHDMPNKIIEVFADMEELGVRP-DEDTVR 234 (284)
Q Consensus 161 ty~~Ll~~~~~~--g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~---~~~~G~~~~A~~l~~~M~~~g~~P-d~~ty~ 234 (284)
+|+.+-.++.+. +++++|...|++.++. .|.+...+..+... +...|+.++|++.|++..+. .| +...+.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~ 213 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKV 213 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHH
Confidence 666655555543 4688999999888876 35566655555444 34567778888888876654 34 455565
Q ss_pred HHHHHHHHc----CCHHHHHHHHHHhHHh
Q 023326 235 RIASAFQRV----GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 235 ~ll~a~~~~----G~~d~a~~l~~~m~~~ 259 (284)
.+...+... |+.++|.+++++..+.
T Consensus 214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~ 242 (472)
T 4g1t_A 214 LLALKLHKMREEGEEEGEGEKLVEEALEK 242 (472)
T ss_dssp HHHHHHHHCC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 555555544 5677888888877655
No 188
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.62 E-value=0.049 Score=36.64 Aligned_cols=81 Identities=15% Similarity=0.057 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
.+..+-..|.+.|++++|+..|++..+.. +-+...+..+-..+.+.|++++|...+++..+.. |.+...+..+-..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 44445556899999999999999988753 2357788889999999999999999999998864 55677777766666
Q ss_pred HhCC
Q 023326 206 DHHD 209 (284)
Q Consensus 206 ~~~G 209 (284)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.58 E-value=0.019 Score=52.95 Aligned_cols=89 Identities=9% Similarity=-0.005 Sum_probs=77.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 023326 168 AFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDD 247 (284)
Q Consensus 168 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d 247 (284)
.+.+.|++++|.+.+++.++. .|.+...|..+-..|.+.|++++|++.|++..+..- -+...|..+-.+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 355789999999999999886 455788999999999999999999999999887632 25678899999999999999
Q ss_pred HHHHHHHHhHHh
Q 023326 248 KQKLVLKKYLSK 259 (284)
Q Consensus 248 ~a~~l~~~m~~~ 259 (284)
+|.+.|++..+.
T Consensus 92 eA~~~~~~al~~ 103 (477)
T 1wao_1 92 AALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988765
No 190
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.56 E-value=0.053 Score=52.44 Aligned_cols=154 Identities=6% Similarity=-0.029 Sum_probs=106.3
Q ss_pred cCCchHH-HHHHHHHHHHHccCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC----------
Q 023326 100 ELPNEKH-AVYGALDKWTAWETEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG---------QGAT---------- 158 (284)
Q Consensus 100 ~~~~~a~-~vf~~l~~~~~~~~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g---------~~p~---------- 158 (284)
+...+|. .+|+.--. ..| +..-+-..+...-+.|++++|.++|+.+.+.. ..|+
T Consensus 357 ~~~~~a~r~il~rAi~-----~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~ 431 (679)
T 4e6h_A 357 NTDSTVITKYLKLGQQ-----CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKS 431 (679)
T ss_dssp SCCTTHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhcc
Confidence 4555664 77654421 223 44445567777888999999999999988642 1142
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 023326 159 --MGTYDTLLLAFDKDHRADEAESLWNMILHT-QTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRR 235 (284)
Q Consensus 159 --~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ 235 (284)
...|...+...-+.|.++.|..+|....+. +.....+.+..+.|.-.+ .++.+.|.++|+...+. +.-+..-+..
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~ 509 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINK 509 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 346888888888889999999999999876 322223333344444222 35699999999987765 2224555667
Q ss_pred HHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 236 IASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 236 ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+.-....|+.+.|..+|++.....
T Consensus 510 y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 510 YLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 7787788999999999999877653
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.51 E-value=0.018 Score=40.57 Aligned_cols=66 Identities=11% Similarity=0.103 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
|.+...|..+-..|.+.|++++|++.|++..+..-. +...|..+-.+|...|++++|.+.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 557888999999999999999999999998776422 455888899999999999999999987764
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.47 E-value=0.032 Score=49.73 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------------CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQ--------------TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~--------------~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
..|..+-..+.+.|++++|...|++.++.. ..|.+..+|+.+-..|.+.|++++|++.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 446677778899999999999999887610 23445678999999999999999999999998765
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 226 VRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 226 ~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.| +...|..+-.+|...|++++|.+.|++..+.
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34 5778888999999999999999999988765
No 193
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=96.40 E-value=0.28 Score=39.41 Aligned_cols=129 Identities=12% Similarity=-0.017 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 123 PLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH----RADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 123 ~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
+..++..+=..|...|++++|+..|+.-.+.| +...+..|=..|.. + +.++|..+|+...+.+ +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 34444444455778899999999999988876 45666666666766 6 8999999999987753 55567
Q ss_pred HHHHHHHHh----CCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 199 SRMISLYDH----HDMPNKIIEVFADMEELGVR-PDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 199 n~lI~~~~~----~G~~~~A~~l~~~M~~~g~~-Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
..|-..|.. .+++++|+++|++-.+.|.. -+...+..|-..|.. .++.++|.+.|++-.+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 777777776 88999999999998776542 125677777777777 78899999999988765
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.088 Score=46.74 Aligned_cols=128 Identities=12% Similarity=-0.026 Sum_probs=93.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGA-T---------------MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK- 195 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p-~---------------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~- 195 (284)
.+.+.|++++|++.|....+..-.. + ...+..|...|.+.|++++|.+++..+......-.+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3788999999999999988753221 1 1347889999999999999999998876532221121
Q ss_pred ---HHHHHHHHHHHhCCChhHHHHHHHHHH----HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 196 ---RLFSRMISLYDHHDMPNKIIEVFADME----ELGVRPD-EDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 196 ---~tyn~lI~~~~~~G~~~~A~~l~~~M~----~~g~~Pd-~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
.+.+.+-..+...|+.++|++++++.. ..+..+. ..++..|...|...|++++|..++.+.....
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 223444444556789999999998764 3455554 4578888899999999999999999887543
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.33 E-value=0.062 Score=49.12 Aligned_cols=98 Identities=14% Similarity=0.041 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---------------HHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSIS---------------KRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~---------------~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
...|..+-..|.+.|++++|...|++.++.. |.+ ...|+-+-.+|.+.|++++|++.|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 4577788888999999999999999998753 323 67899999999999999999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 224 LGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 224 ~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..- -+...|..+-.+|...|++++|...|++..+.
T Consensus 346 ~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 532 26778999999999999999999999988754
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.31 E-value=0.2 Score=37.47 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh----CCChhH
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH----HDMPNK 213 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~----~G~~~~ 213 (284)
++.++|++.|+.-.+.| .|+.. |=..|...+.+++|.+.|+.-.+.| +...+..|-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788888898888887 34443 4444556677888888888888763 45566777777777 789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhHHh
Q 023326 214 IIEVFADMEELGVRPDEDTVRRIASAFQR----VGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 214 A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~----~G~~d~a~~l~~~m~~~ 259 (284)
|++.|++-.+.| +...+..|-..|.. .++.++|.+.|++-.+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999888776 56667777777777 78899999888877654
No 197
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.28 E-value=0.054 Score=46.51 Aligned_cols=123 Identities=9% Similarity=-0.047 Sum_probs=85.0
Q ss_pred hcCCchHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 023326 99 SELPNEKHAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGAT--MGTYDTLLLAFDKDHRAD 176 (284)
Q Consensus 99 ~~~~~~a~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~--~~ty~~Ll~~~~~~g~~~ 176 (284)
.|..++|..+|+.+. ...|+-...-..-..+.+.|+|++|+..|+...+.. .|. ...+..|=.++...|+++
T Consensus 115 ~g~y~eA~~~l~~~~-----~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~ 188 (282)
T 4f3v_A 115 QGNYADAMEALEAAP-----VAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFT 188 (282)
T ss_dssp HTCHHHHHHHHTSSC-----CTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHH-----hcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHH
Confidence 566666666665442 234533222233336899999999999998443321 111 236677778899999999
Q ss_pred HHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 177 EAESLWNMILHTQTRSI-SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
+|...|++.......|. ....+...-.++.+.|+.++|..+|+++... .|+
T Consensus 189 eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 99999999875433243 3335677778889999999999999999876 455
No 198
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=95.94 E-value=0.31 Score=44.25 Aligned_cols=122 Identities=11% Similarity=0.147 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 126 AAAKALRILRKRG---QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD----HRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 126 ~y~~~i~~~~~~g---~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~----g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
.+..+=..|.+.| +.++|++.|+.-.+.|. ++...+..|-..|... ++.++|..+|+... .| +...+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g----~~~a~ 251 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG----YPASW 251 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG----STHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC----CHHHH
Confidence 6666666677788 88888888888887763 3444444444445433 57888888888776 22 33334
Q ss_pred HHHHHH-H--HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhH
Q 023326 199 SRMISL-Y--DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG-----QDDKQKLVLKKYL 257 (284)
Q Consensus 199 n~lI~~-~--~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G-----~~d~a~~l~~~m~ 257 (284)
..|-.. | ...|++++|++.|++-.+.| +...+..|-..|. .| +.++|.+.|++-.
T Consensus 252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 252 VSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 444443 3 34778888888888777666 4555555555554 44 6667766665443
No 199
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.72 E-value=0.21 Score=46.20 Aligned_cols=125 Identities=8% Similarity=0.015 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYD--TLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.|...+..+.+.|.++.|..+|+.. +.. ..+...|. +.+.... .++.+.|..+|+..++.. |.+...|...|.
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid 362 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3455666666788899999999988 321 12444443 3333322 347999999999999875 335556778888
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
-..+.|+.+.|..+|+... -....|...+.--...|+.+.+.++++++.+..
T Consensus 363 ~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999962 246677777777778899999999999888643
No 200
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.62 E-value=0.053 Score=37.43 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMG-TYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
+.+.|++++|+..|+...+.. +-+.. .|..+-..|.+.|++++|...|++.++.
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444555555555555544431 11233 4444444445555555555555555443
No 201
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.51 E-value=0.37 Score=45.43 Aligned_cols=115 Identities=6% Similarity=-0.028 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCC-ChhHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHD-MPNKIIE 216 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G-~~~~A~~ 216 (284)
+++++++++.+.+.. +-+...|+----.+.+.+ +++++.++++.+.+.+. .+...|+.---.+.+.| ..+++++
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~--~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHHcCCChHHHHH
Confidence 899999999999764 236778888888888888 77999999999999764 48899999988889999 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHH
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRV--------------GQDDKQKLVLKKYLS 258 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~--------------G~~d~a~~l~~~m~~ 258 (284)
.++++.+.... |...|+-.-..+.+. +.++++.+.+++..+
T Consensus 166 ~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHh
Confidence 99988765433 667777776666663 556888888776664
No 202
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.51 E-value=0.083 Score=46.17 Aligned_cols=97 Identities=11% Similarity=-0.013 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-----------------HHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 159 MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-----------------RLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 159 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-----------------~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
...+..+-..+.+.|++++|...|++.++.. |.+. ..|+.+-..|.+.|++++|++.|++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456667777888999999999999987753 3222 27888999999999999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 222 EELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 222 ~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+. .| +...|..+-.+|...|++++|.+.|++..+.
T Consensus 257 l~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 257 LTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 765 34 6778999999999999999999999987643
No 203
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.33 E-value=0.94 Score=39.12 Aligned_cols=105 Identities=11% Similarity=0.057 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-----
Q 023326 138 GQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRAD--EAESLWNMILHTQTRSISKRLFSRMISLYDHHDM----- 210 (284)
Q Consensus 138 g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~--~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~----- 210 (284)
+++++++.+++.+.+.. +-|-..|+----.+.+.|..+ ++.++++.+++.+.. |...|+.--....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~--N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK--NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhccccchhh
Confidence 45556666666555432 224555555555555555555 555556666554332 55555555444445444
Q ss_pred -hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 211 -PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 211 -~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
++++++.++++...... |...|+-+-..+.+.|..
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~ 236 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRS 236 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCC
Confidence 55555555555554322 555555555555555553
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.25 E-value=0.074 Score=36.66 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKR-LFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
-..+.+.|++++|...+++.++.. |.+.. .|..+-..|...|++++|++.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445778899999999999999864 55777 89999999999999999999999987764
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.19 E-value=0.087 Score=41.15 Aligned_cols=113 Identities=9% Similarity=-0.019 Sum_probs=83.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR----------ADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
..+.+++++|++.++.-.+.. +-+...|+.+=.++...++ +++|...|++.++. .|.+...|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 667788999999999888763 2266677766667776665 45899999998886 4668888999999
Q ss_pred HHHhCC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 204 LYDHHD-----------MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 204 ~~~~~G-----------~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
+|...| ++++|++.|++-.+. .|+...|..-+... ++|-+++-+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~------~ka~el~~~~~ 145 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAY 145 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH------HhCHhccCccc
Confidence 998875 899999999987664 78777776655544 44455554443
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.82 E-value=0.4 Score=42.65 Aligned_cols=135 Identities=4% Similarity=-0.090 Sum_probs=90.8
Q ss_pred CCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH----hcC-CHHHHHH---HHHHHH
Q 023326 121 EFPLIAAAKALRILRK--RG---QWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFD----KDH-RADEAES---LWNMIL 186 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~--~g---~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~----~~g-~~~~A~~---l~~~m~ 186 (284)
..+...|...+.+... .+ ...+|+.+|++-.+. .|+ ...|..+--+|. ..+ .-..... .+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 3456677777766543 23 358999999998876 565 233333222221 111 1112122 222222
Q ss_pred HcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 187 HTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 187 ~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.....|.+..+|.++--.+...|++++|+..+++..+.. |+...|..+-..+.-.|+.++|.+.+++-.+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 223336688889888777777899999999999998885 89888888888899999999999999877654
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.58 E-value=0.37 Score=46.47 Aligned_cols=46 Identities=13% Similarity=-0.117 Sum_probs=26.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMI 185 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m 185 (284)
..+.|++++|+++.+.+ .+...|..|-..+.+.|+++.|++.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455555555554332 24456666666666666666666666654
No 208
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.15 E-value=2.4 Score=37.30 Aligned_cols=121 Identities=9% Similarity=0.014 Sum_probs=92.0
Q ss_pred HHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC
Q 023326 134 LRKRG-QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD-H-RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM 210 (284)
Q Consensus 134 ~~~~g-~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~-g-~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~ 210 (284)
+...| .+++++++++.++... .-+...|+---..+.+. + +.+++.++++.+.+.. |.|...|+.---.+.+.|.
T Consensus 98 L~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 98 LTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcc
Confidence 55567 5999999999999763 33667888777777666 6 8899999999999864 4588889887777777777
Q ss_pred hh--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhHH
Q 023326 211 PN--------KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ-------DDKQKLVLKKYLS 258 (284)
Q Consensus 211 ~~--------~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~-------~d~a~~l~~~m~~ 258 (284)
.+ ++++.++++.+.... |...|+---..+.+.|. ++++.+.+++...
T Consensus 175 ~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 175 LGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 77 999999999886543 77777777777777775 6777777766654
No 209
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.79 E-value=2.2 Score=40.03 Aligned_cols=116 Identities=8% Similarity=-0.008 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 023326 139 QWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDHR----------ADEAESLWNMILHTQTRSISKRLFSRMISLYDH 207 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~ 207 (284)
.-++|++.++.+.+. .| +...|+.-=..+.+.|+ ++++.++++.+.+.. |.+..+|+.--..+.+
T Consensus 44 ~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 357889999999876 34 34566655445555555 899999999999875 5588899999999999
Q ss_pred CC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhHHh
Q 023326 208 HD--MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVG-QDDKQKLVLKKYLSK 259 (284)
Q Consensus 208 ~G--~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G-~~d~a~~l~~~m~~~ 259 (284)
.| +++++++.++++.+...+ |...|+.--..+.+.| ..+++.+.++++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~ 173 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 173 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 99 679999999999987544 7777877777788889 889898888877654
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=93.58 E-value=2.5 Score=37.17 Aligned_cols=120 Identities=10% Similarity=0.040 Sum_probs=90.3
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC-C-C
Q 023326 135 RKRGQWLRVIQVAKWMLSKGQGA-TMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-D-M 210 (284)
Q Consensus 135 ~~~g~~~~A~~l~~~M~~~g~~p-~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-G-~ 210 (284)
.+.+.-++|+++++.++.. .| +...|+.-=..+...| +++++.++++.+.... |.+..+|+.--..+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 3344567899999999876 34 4566777777777778 5999999999999864 55888899888888877 7 8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHhHHh
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDD--------KQKLVLKKYLSK 259 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d--------~a~~l~~~m~~~ 259 (284)
.++++++++++.+..-+ |...|+---..+.+.|..+ ++.+..+++.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence 99999999998865322 6666665555555555555 788888888765
No 211
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=93.51 E-value=2.5 Score=36.86 Aligned_cols=122 Identities=10% Similarity=0.030 Sum_probs=89.1
Q ss_pred HHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC--
Q 023326 134 LRKRG--QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR-ADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-- 208 (284)
Q Consensus 134 ~~~~g--~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-- 208 (284)
+.+.| .+++++.+++.|.+.. .-|-..|+----.+...|. ++++.+.++.+++.. |.|...|+..-..+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhhh
Confidence 44556 4899999999999864 3377888887777888888 689999999999875 44888888777666665
Q ss_pred ------------CChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhHHhc
Q 023326 209 ------------DMPNKIIEVFADMEELGVRP-DEDTVRRIASAFQRV-----------GQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 209 ------------G~~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~-----------G~~d~a~~l~~~m~~~~ 260 (284)
+.++++++.+.+.... .| |...|+-+-..+.+. +.++++.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578889888887654 34 555555444444433 45788888888887553
No 212
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.39 E-value=0.87 Score=31.69 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCC
Q 023326 157 ATMGTYDTLLLAFDKDHR---ADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 157 p~~~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g 225 (284)
.|...+..+-.++...++ .++|..++++.++. .|.++.....+-..+.+.|++++|++.|+++.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355555555555544333 68888888888875 46678888888888888999999999999887764
No 213
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=93.31 E-value=1 Score=40.70 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRSISKRLFSRMI 202 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~tyn~lI 202 (284)
....+-..|...+.++++..-...+.+.-...+...+..|-..|.+.| +.++|.+.|....+.|.. +...+..|-
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg 220 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 333444456666655554444443333222223337777888888899 999999999999988743 555555666
Q ss_pred HHHHhC----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHhHHh
Q 023326 203 SLYDHH----DMPNKIIEVFADMEELGVRPDEDTVRRIASA-F--QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 203 ~~~~~~----G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a-~--~~~G~~d~a~~l~~~m~~~ 259 (284)
..|... +++++|+++|++.. .| +...+..|-.. | ...|+.++|.+.|++..+.
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 666544 69999999999987 33 33344444443 3 4589999999999887654
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=93.12 E-value=0.27 Score=38.32 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=69.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCh----------hHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMP----------NKIIEVFADMEELGVRP-DEDTVRRIA 237 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~----------~~A~~l~~~M~~~g~~P-d~~ty~~ll 237 (284)
..+.+++++|.+.++.-++. .|.+...|+.+-.++...|++ ++|+..|++-.+. .| +...|..+-
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG 87 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 34567789999999998886 466888888888888888765 5999999987665 45 566899999
Q ss_pred HHHHHcC-----------CHHHHHHHHHHhHHh
Q 023326 238 SAFQRVG-----------QDDKQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G-----------~~d~a~~l~~~m~~~ 259 (284)
.+|...| ++++|.+.|++..+.
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9998775 899999999988754
No 215
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=92.72 E-value=4.5 Score=35.28 Aligned_cols=116 Identities=6% Similarity=-0.020 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-hhHHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM-PNKIIE 216 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~-~~~A~~ 216 (284)
+++++.+++.+.... +-+..+|+----.+.+.+ +++++..+++.+.+.. |.|...|+.---.+.+.|. .+++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 689999999998753 337778887777777777 4899999999999976 4488889988888888998 599999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHhHHh
Q 023326 217 VFADMEELGVRPDEDTVRRIASAFQRV--------------GQDDKQKLVLKKYLSK 259 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~ty~~ll~a~~~~--------------G~~d~a~~l~~~m~~~ 259 (284)
.++++.+.... |...|+-.-..+.+. +.++++.+.++.....
T Consensus 167 ~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~ 222 (331)
T 3dss_A 167 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT 222 (331)
T ss_dssp HHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh
Confidence 99999886543 666666666555554 4577777777766543
No 216
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.65 E-value=0.7 Score=41.27 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHc--C-CCCCH------------------HHHHHHHHHHHhcCCHHHH
Q 023326 123 PLIAAAKALRILR---KRGQWLRVIQVAKWMLSK--G-QGATM------------------GTYDTLLLAFDKDHRADEA 178 (284)
Q Consensus 123 ~~~~y~~~i~~~~---~~g~~~~A~~l~~~M~~~--g-~~p~~------------------~ty~~Ll~~~~~~g~~~~A 178 (284)
|+..|..++..-. ..|+.++|.+.+++.... | +-++. .....++..+...|+.+++
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444444444332 357888888888877653 3 22221 2233456667789999999
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH-----HCCCCCCHHHHHHH
Q 023326 179 ESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADME-----ELGVRPDEDTVRRI 236 (284)
Q Consensus 179 ~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~-----~~g~~Pd~~ty~~l 236 (284)
...+..++.. .|.+...|-.+|.+|.+.|+..+|++.|++.. +.|+.|...+-...
T Consensus 191 ~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 191 IAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 9999998875 46789999999999999999999999999864 46999988864433
No 217
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.16 E-value=0.4 Score=46.23 Aligned_cols=85 Identities=9% Similarity=-0.039 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 023326 122 FPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRM 201 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~l 201 (284)
.+...+..+=..+.+.|+++.|.++|..+.. |..|...+...|+.+...++.+.....|. |+..
T Consensus 679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-------~~~A 742 (814)
T 3mkq_A 679 SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-------FNLA 742 (814)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHH
T ss_pred CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-------hHHH
Confidence 3455566666669999999999999998864 45666667778888776666665555432 5666
Q ss_pred HHHHHhCCChhHHHHHHHHHH
Q 023326 202 ISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 202 I~~~~~~G~~~~A~~l~~~M~ 222 (284)
...|.+.|++++|++++.++.
T Consensus 743 ~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 743 FNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHcC
Confidence 667777888888888877653
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.92 E-value=1.5 Score=33.73 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCChhHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH---RADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G~~~~A 214 (284)
.+..+.+-|.+..+.|. ++..+--.+--++++++ ++++|..+++++.+.. .| .....+=.|--+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777766665 67766666777788877 7778999999998875 12 1122223334456899999999
Q ss_pred HHHHHHHHHC
Q 023326 215 IEVFADMEEL 224 (284)
Q Consensus 215 ~~l~~~M~~~ 224 (284)
.+.++...+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999988765
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.66 E-value=1.7 Score=34.35 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=80.1
Q ss_pred hcCCchHHHHHHHH---HHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 023326 99 SELPNEKHAVYGAL---DKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 99 ~~~~~~a~~vf~~l---~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~ 175 (284)
+|..+.|..+-+.+ ..|..++.. ..+.|+++-|.+.|..... |..|.-.|.-.|+.
T Consensus 18 lg~l~~A~e~a~~l~~~~~Wk~Lg~~------------AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 18 YGNLDAALDEAKKLNDSITWERLIQE------------ALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp TTCHHHHHHHHHHHCCHHHHHHHHHH------------HHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred cCCHHHHHHHHHHhCCHHHHHHHHHH------------HHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34444444433333 237777777 8889999999999887754 45555566677887
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+.-..+-+.-... .. ||.....+...|++++++++|.+ .|--|..+.+ ....|..+.|.++.++
T Consensus 77 e~L~kla~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~~------A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 77 NKLSKMQNIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYAV------AKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHHH------HHHcCcHHHHHHHHHH
Confidence 7655444333322 22 78888888899999999999865 3433433322 2247788899999988
Q ss_pred hH
Q 023326 256 YL 257 (284)
Q Consensus 256 m~ 257 (284)
+.
T Consensus 141 ~~ 142 (177)
T 3mkq_B 141 AE 142 (177)
T ss_dssp TT
T ss_pred hC
Confidence 75
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.51 E-value=1.4 Score=33.96 Aligned_cols=72 Identities=13% Similarity=0.014 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 122 FPLIAAAKALRILRKRG---QWLRVIQVAKWMLSKGQGA-T-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 122 p~~~~y~~~i~~~~~~g---~~~~A~~l~~~M~~~g~~p-~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
++..+.-.+=-++++.+ ++++++.+|++..+.. .| + ...+=.|=-+|.+.|++++|.+.++.+.+. .|.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--eP~n~Q 106 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQNNQ 106 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHH
Confidence 55555555555666666 6668888888777764 23 1 122222333457788888888888888775 453433
No 221
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=91.35 E-value=3.3 Score=30.53 Aligned_cols=86 Identities=7% Similarity=-0.057 Sum_probs=69.5
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh--
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDK----DHRADEAESLWNMILHTQTRSISKRLFSRMISLYDH-- 207 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~-- 207 (284)
|...+.+++|++.|+.-.+.| +...+..|=..|.. .++.++|.++|+.-.+.| +...+..|-..|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~ 107 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAGK 107 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCCC
Confidence 444566888999999988876 56777777777777 789999999999998864 45567777788888
Q ss_pred --CCChhHHHHHHHHHHHCCC
Q 023326 208 --HDMPNKIIEVFADMEELGV 226 (284)
Q Consensus 208 --~G~~~~A~~l~~~M~~~g~ 226 (284)
.+++++|++.|++-.+.|.
T Consensus 108 g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 108 GVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHHHHHHHHHCCC
Confidence 8999999999999888774
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.00 E-value=4.8 Score=31.73 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=71.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChh
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPN 212 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~ 212 (284)
.-.+.|+++.|+++.+++ -+...|..|-....+.|+++-|++.|.... | |..+.=.|.-.|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH-------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-------C---HHHHHHHHHHHTCHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-------C---HHHHHHHHHHhCCHH
Confidence 356789999999998877 367899999999999999999999998753 2 666666777788887
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 213 KIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 213 ~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
+..++-+.-...|- ++.-...+--.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 77766555444542 23444444455666666555533
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=90.77 E-value=2.8 Score=35.98 Aligned_cols=109 Identities=4% Similarity=-0.036 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhC-CC
Q 023326 140 WLRVIQVAKWMLSKGQGAT---MGTYDTLLLAFDKD-----HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHH-DM 210 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~---~~ty~~Ll~~~~~~-----g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~-G~ 210 (284)
..+|..++++.++. .|+ -..|+.|-..|.+. |+.++|+++|++-++..-. .+..++...-..+|+. |+
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-HDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-TCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHhcCC
Confidence 44565656655554 566 45788888888884 9999999999999986432 1367788888999995 99
Q ss_pred hhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 211 PNKIIEVFADMEELGVR--PDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~--Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+++.+.+++-...... |+....+. +.-++|.+++++..+-
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~--------~~q~eA~~LL~~~~d~ 298 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVI--------LSQKRARWLKAHVQDF 298 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHH--------HHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHH--------HHHHHHHHHHHHhHHh
Confidence 99999999999998877 87543333 3345677777665543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.41 E-value=2.3 Score=29.78 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQ-----TRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~-----~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
-+..|-..+.+.|+++.|...+++..+.. .......+|..|-.+|.+.|++++|+.++++...
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555556666666666665554321 0112455667777777777777777777776654
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.13 E-value=2.2 Score=29.85 Aligned_cols=66 Identities=12% Similarity=-0.035 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADMEEL------GVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~------g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+..-+-.|-..+.+.|+++.|...|++-.+. +-.+....|..|-.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444567778889999999999999985542 11245668899999999999999999999988753
No 226
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.07 E-value=11 Score=34.52 Aligned_cols=30 Identities=13% Similarity=-0.145 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 023326 124 LIAAAKALRILRKRGQWLRVIQVAKWMLSK 153 (284)
Q Consensus 124 ~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~ 153 (284)
...+-..+..+.+.|+.++|..+|++-...
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 445556666677889999999999987766
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.73 E-value=3.4 Score=28.53 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhCCC---hhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 192 SISKRLFSRMISLYDHHDM---PNKIIEVFADMEELGVRP-DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~---~~~A~~l~~~M~~~g~~P-d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|.+...+..+-.++...++ .++|..+|++-.+. .| +......+-..+...|++++|...|+++.+.-
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577778888888876655 79999999997765 45 55567777788999999999999999998653
No 228
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.98 E-value=7.7 Score=37.79 Aligned_cols=126 Identities=9% Similarity=-0.012 Sum_probs=77.3
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHc------CCCCCCHHH--
Q 023326 129 KALRILRKRGQ-WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH--RADEAESLWNMILHT------QTRSISKRL-- 197 (284)
Q Consensus 129 ~~i~~~~~~g~-~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~------~~~~~~~~t-- 197 (284)
.+++.+...|+ .+.|+.+|+++.+..-.-+......+|..+.+.+ ++ +|.+++++.++. ...+.+...
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev-~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKEL-DMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHH-HHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 44444444556 6889999999988632212222333444333333 23 244444443321 122222211
Q ss_pred --------HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 198 --------FSRMISLYDHHDMPNKIIEVFADMEELGVRPDED-TVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 198 --------yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~-ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
.+.=..-+...|+++.|+++-++-.. +.|+.+ ||..|...|...|++|.|.-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11223445568999999999888544 478765 99999999999999999999999885
No 229
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=86.65 E-value=5 Score=35.59 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHH
Q 023326 156 GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVR 234 (284)
Q Consensus 156 ~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~ 234 (284)
..+..+|..+-..+...|++++|...+++.+..+ | +...|..+=..+.-.|+.++|.+.|++-... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5578888888777777899999999999999985 4 7777888888999999999999999876554 56666653
No 230
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.30 E-value=16 Score=32.20 Aligned_cols=106 Identities=8% Similarity=-0.039 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCC--C-----H-------------HHHHHHHHHHHhCCChhHH
Q 023326 158 TMGTYDTLLLAFD---KDHRADEAESLWNMILHTQTRSI--S-----K-------------RLFSRMISLYDHHDMPNKI 214 (284)
Q Consensus 158 ~~~ty~~Ll~~~~---~~g~~~~A~~l~~~m~~~~~~~~--~-----~-------------~tyn~lI~~~~~~G~~~~A 214 (284)
|...|..++..-. ..|+.+.|.+.+.+....+--++ + . .....++..+...|++++|
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a 190 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 190 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 5666777665433 35788888888887766542210 1 1 1235677888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHH----hcCCCc
Q 023326 215 IEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLS----KWKYIH 264 (284)
Q Consensus 215 ~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~----~~~~~~ 264 (284)
+..+..+... -.-+...|..+|.+|.+.|+..+|.+.|+.+.+ +.+..|
T Consensus 191 ~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 191 IAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9998887654 233888999999999999999999999988754 445444
No 231
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.18 E-value=6.3 Score=28.15 Aligned_cols=46 Identities=4% Similarity=0.076 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
+..+-++.+......| +..+..+.+.+|-|.+++--|+.+|+-.+.
T Consensus 28 e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444455555555554 555555555555555555555555555543
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=82.46 E-value=5.4 Score=34.19 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCH
Q 023326 175 ADEAESLWNMILHTQTRSI--SKRLFSRMISLYDHH-----DMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRV-GQD 246 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~~~~~-----G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~-G~~ 246 (284)
+..|+..+++.++. .|. +-..|.+|...|.+. |+.++|.+.|++-.+..-.-+..++...-..+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666667777765 342 356799999999995 99999999999977653322477888888889885 999
Q ss_pred HHHHHHHHHhHHh
Q 023326 247 DKQKLVLKKYLSK 259 (284)
Q Consensus 247 d~a~~l~~~m~~~ 259 (284)
+++.+++++-..-
T Consensus 257 ~~a~~~L~kAL~a 269 (301)
T 3u64_A 257 AGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988754
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.42 E-value=10 Score=28.08 Aligned_cols=83 Identities=10% Similarity=0.018 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCHHHH-HHHHHHHHhCCChhHHH
Q 023326 140 WLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADE---AESLWNMILHTQTRSISKRLF-SRMISLYDHHDMPNKII 215 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~---A~~l~~~m~~~~~~~~~~~ty-n~lI~~~~~~G~~~~A~ 215 (284)
+..+.+-|......|. |+..+--.+-.++.++..... +..+++++...+. |....-| =.|--||.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~-p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS-KEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444444444444343 444444444445555554333 6666666655421 1112222 22334666667777777
Q ss_pred HHHHHHHHC
Q 023326 216 EVFADMEEL 224 (284)
Q Consensus 216 ~l~~~M~~~ 224 (284)
+.++.+.+.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666543
No 234
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.73 E-value=11 Score=26.81 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=60.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||.-+-+++...|. ..++--+-+..+-..|++++|..+.+.+ +.| |...|-+|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~p-dlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYP-DLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCG-GGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCc-hHHHHHHHHH--HhcccHHHHHHHH
Confidence 57899999999988875 3333334445567789999999887754 354 8888887765 4778888888888
Q ss_pred HHHHHCCCCCCHHHH
Q 023326 219 ADMEELGVRPDEDTV 233 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty 233 (284)
.+|...| .|....|
T Consensus 93 ~~la~sg-~p~~q~F 106 (116)
T 2p58_C 93 NRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHTTCC-CHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 8887776 3333333
No 235
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=79.68 E-value=18 Score=27.52 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
.+|.-|...|+.++|.+.++++....+. ..+++..+..++-+.++ .+.+..++..+...+..+ =+.+..|+.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is-----~~q~~~Gf~ 87 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT-----IDQMKRGYE 87 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC-----HHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC-----HHHHHHHHH
Confidence 4555599999999999999998633222 34666777778877533 456778899998877765 345555554
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQDD 247 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~d 247 (284)
+ .++.+.++.-. .|+...|-.-+ ..+...|-+.
T Consensus 88 ~------vl~~ldDl~lD--iP~A~~~la~~v~~ai~~g~l~ 121 (152)
T 2ion_A 88 R------IYNEIPDINLD--VPHSYSVLERFVEECFQAGIIS 121 (152)
T ss_dssp H------HHHHHHHHHHH--STTHHHHHHHHHHHHHHTTCSC
T ss_pred H------HHHhChHhccC--ccchHHHHHHHHHHHHHCCCCC
Confidence 4 44444444322 57777655444 4445555554
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=79.17 E-value=14 Score=27.31 Aligned_cols=91 Identities=11% Similarity=0.005 Sum_probs=61.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhH---HHHHHHHHHHCCCCC-CHHHHH-HHHHHH
Q 023326 166 LLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNK---IIEVFADMEELGVRP-DEDTVR-RIASAF 240 (284)
Q Consensus 166 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~---A~~l~~~M~~~g~~P-d~~ty~-~ll~a~ 240 (284)
++.-.....+..+++-|++-...+. + +..+---+-.++++..+.++ ++.++++....+ .| +..-|. .|--|+
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~-s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-V-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-C-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 3333444456666777776666554 3 55554555667778876665 999999987764 24 333333 344689
Q ss_pred HHcCCHHHHHHHHHHhHHh
Q 023326 241 QRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 241 ~~~G~~d~a~~l~~~m~~~ 259 (284)
.+.|++++|.+.++.+.+.
T Consensus 85 yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHh
Confidence 9999999999999988765
No 237
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.74 E-value=11 Score=26.84 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
..+||.-+-+++...|. ..++--+-+..+-..|++++|..+.+.+ +.| |...|-+|-. .+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~p-dlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWP-ALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCG-GGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCc-hHHHHHHHHH--HhcccHHHHHHHH
Confidence 57899999999988875 3333334445567789999998877654 344 8888887755 5789999999888
Q ss_pred HHHHHCCCCCCHHHH
Q 023326 219 ADMEELGVRPDEDTV 233 (284)
Q Consensus 219 ~~M~~~g~~Pd~~ty 233 (284)
.+|...| .|....|
T Consensus 92 ~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 92 AGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHTCS-SHHHHHH
T ss_pred HHHHhCC-CHHHHHH
Confidence 8888776 3333333
No 238
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.54 E-value=29 Score=31.01 Aligned_cols=106 Identities=8% Similarity=-0.140 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH------H
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQ--GATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR------L 197 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~--~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~------t 197 (284)
+...+-..|.+.|+.++|.+.|.++...-. .--...+-.+|..+...+++..+....+.....-....+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445667779999999999999999987533 33356788889999999999999999887643322211222 2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHH
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTV 233 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty 233 (284)
|..++ +...+++.+|-..|-+....--..+..++
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~ 246 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLATFTSIELTSY 246 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhccCCccchhhH
Confidence 33332 34568999999999886543323333333
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=76.82 E-value=22 Score=27.00 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 023326 106 HAVYGALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMI 185 (284)
Q Consensus 106 ~~vf~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m 185 (284)
+-+|+.++. .+.-+| ....|++......|-.|-. +...+..-|+.+...|.-|+-.++++++
T Consensus 56 ~y~v~vLd~---IGkiFD----------is~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~ 117 (172)
T 1wy6_A 56 RYMFQVLDK---IGSYFD----------LDKCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREI 117 (172)
T ss_dssp HHHHHHHHH---HGGGSC----------GGGCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHH---HhhhcC----------cHhhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHH
Confidence 566766654 333344 4455666666666655432 4456778888888999999988888886
Q ss_pred HHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 023326 186 LHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVR 227 (284)
Q Consensus 186 ~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~ 227 (284)
... . +++....-.+-.+|.+.|+..+|.+++.+--+.|++
T Consensus 118 l~n-~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 118 LKN-N-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp C---C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hcc-C-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 542 2 336776777888999999999999999998888875
No 240
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.65 E-value=13 Score=28.03 Aligned_cols=45 Identities=2% Similarity=0.051 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
..+-++.+......| +..+..+.+.+|-|.+|+--|+.+|+-.+.
T Consensus 72 lrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 72 LRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334445555555554 555555555555555555555555555543
No 241
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=73.72 E-value=24 Score=25.91 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
..+|.-|...|+.+||.+.++++....+. ..+++..+..++-+.+. .+....++..+...|..+ =+.+..|+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is-----~~q~~~Gf 84 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT-----IDQMKRGY 84 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC-----HHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC-----HHHHHHHH
Confidence 34556699999999999999998633222 34566777778877643 466788899998887765 34455555
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIA-SAFQRVGQD 246 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll-~a~~~~G~~ 246 (284)
.+ .++.+.++.-. .|+...|-.-+ ..+...|-+
T Consensus 85 ~~------v~~~l~Dl~lD--iP~a~~~l~~~v~~ai~~g~l 118 (129)
T 2nsz_A 85 ER------IYNEIPDINLD--VPHSYSVLERFVEECFQAGII 118 (129)
T ss_dssp HH------HHHHHHHHHHH--STTHHHHHHHHHHHHHHTTCS
T ss_pred HH------HHhhChHhhcC--ccchHHHHHHHHHHHHHCCCC
Confidence 44 33334443322 56666554433 333344433
No 242
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.74 E-value=50 Score=33.62 Aligned_cols=114 Identities=6% Similarity=-0.057 Sum_probs=81.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC-----------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 023326 133 ILRKRGQWLRVIQVAKWMLSKGQG-----------------------ATMGTYDTLLLAFDKDHRADEAESLWNMILHTQ 189 (284)
Q Consensus 133 ~~~~~g~~~~A~~l~~~M~~~g~~-----------------------p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 189 (284)
+|...|++++|.+.|.+-.. |+. .-..-|.-++..|-+.+.++.+.++-..-++..
T Consensus 851 ~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~ 929 (1139)
T 4fhn_B 851 IYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK 929 (1139)
T ss_dssp HHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC
T ss_pred HHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47789999999999966321 111 112457788888999999999888866555543
Q ss_pred CCC-CCH--HHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 190 TRS-ISK--RLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 190 ~~~-~~~--~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
... ++. ..|..+.+++...|++++|...+-.+.....+ ......||..+|..|.+++-
T Consensus 930 ~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 930 ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 221 121 25899999999999999999999988776654 44566777777777665543
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=71.75 E-value=24 Score=25.16 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=20.8
Q ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023326 110 GALDKWTAWETEFPLIAAAKALRILRKRGQWLRVIQVAKWML 151 (284)
Q Consensus 110 ~~l~~~~~~~~~p~~~~y~~~i~~~~~~g~~~~A~~l~~~M~ 151 (284)
..|....+....|++.....+|.+|.+.+++-.|.++|+-.+
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333344444555555555555555555555555555444
No 244
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.79 E-value=34 Score=26.31 Aligned_cols=107 Identities=11% Similarity=0.052 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH----HHHHHHHHH---HHhcCCHHHHHHHHHHHHH
Q 023326 121 EFPLIAAAKALRILRKRGQW------LRVIQVAKWMLSKGQGATM----GTYDTLLLA---FDKDHRADEAESLWNMILH 187 (284)
Q Consensus 121 ~p~~~~y~~~i~~~~~~g~~------~~A~~l~~~M~~~g~~p~~----~ty~~Ll~~---~~~~g~~~~A~~l~~~m~~ 187 (284)
.-|..++=..|...-+.|+. ++.+++|++-.. .++|+. ..|--|.-- +-..+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33455555666667777877 777788886654 345542 111111111 1223799999999999987
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCH
Q 023326 188 TQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDE 230 (284)
Q Consensus 188 ~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~ 230 (284)
. ++-. ..+|-..-.--.+.|++++|.+++..-...|.+|..
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 7 5544 667888888888999999999999988877766544
No 245
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.01 E-value=15 Score=31.04 Aligned_cols=118 Identities=6% Similarity=0.005 Sum_probs=77.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCC
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS-ISKRLFSRMISLYDHHD 209 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~tyn~lI~~~~~~G 209 (284)
+..+.+.|.+++|++-...-++.. +-|.-.=..|+..+|-.|+++.|.+-++...+..-.- +...+|-.+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-----
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-----
Confidence 345678899999999888776652 4477778889999999999999999888887763220 012233333332
Q ss_pred ChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHH--HcCCHHHHHHHHHHhHHh
Q 023326 210 MPNKIIEVFADMEELGVRP-----DEDTVRRIASAFQ--RVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 210 ~~~~A~~l~~~M~~~g~~P-----d~~ty~~ll~a~~--~~G~~d~a~~l~~~m~~~ 259 (284)
+..=.+...-+-.| ...-...|+.+.. ..|+.++|.++-++..+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333322222 3335667777765 569999999999988765
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.88 E-value=33 Score=25.86 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 139 QWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 139 ~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
+.-+..+-++.+....+.|+.....+-|.+|-+.+++..|.++|+..+.+- .+ ...+|..+|.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~-~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GP-HKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CC-chhhHHHHHH
Confidence 444566666666667788999999999999999999999999998887663 32 3445766654
No 247
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=60.14 E-value=88 Score=27.35 Aligned_cols=116 Identities=13% Similarity=0.096 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
+.+|.-|...|+.+||.+.++++....+.+ .+++..+..++-+.++ .+...+++..+...+..+ =+.|..|+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls-----~~q~~~Gf 294 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT-----IDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC-----HHHHHHHH
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC-----HHHHHHHH
Confidence 466666888899999999998886432222 4456667777766543 455778888888877764 34555665
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRR-IASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~-ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.+ .++.+.++.-. .|+...|-. ++.-+...|-+.. .+.+.|..+
T Consensus 295 ~~------vl~~ldDl~lD--iP~A~~~la~~varai~~g~l~~--~f~~~~p~r 339 (358)
T 3eiq_C 295 ER------IYNEIPDINLD--VPHSYSVLERFVEECFQAGIISK--QLRDLCPSR 339 (358)
T ss_dssp HH------HHHHHHHHHHH--CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCCC
T ss_pred HH------HHHhccHhhcc--cccHHHHHHHHHHHHHHCCCCCH--HHHHhCccc
Confidence 55 44444444322 477776544 3444556666553 345555433
No 248
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.05 E-value=48 Score=24.25 Aligned_cols=70 Identities=10% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM--PNKIIEVFADMEELGVRPDEDT 232 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~--~~~A~~l~~~M~~~g~~Pd~~t 232 (284)
....+|.-|...|+.++|.+.++++...... ...++..+..++=+.++ .+.+..++..+...|+-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~--~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH--HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 3567888899999999999999998533222 34556777777777653 4678889999988886654443
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=59.39 E-value=68 Score=28.47 Aligned_cols=91 Identities=5% Similarity=0.018 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCCHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGAT-----MGTYDTLLLAFDKDHRADEAESLWNMILHTQ--TRSISKRLFSRM 201 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~tyn~l 201 (284)
.+...|...|++.+|+.++..+.+.=-..| ...|-.-+..|...+++.++...+..-...- +.+ +..+ ...
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i-~a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKV-QGA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHH-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHH-HHH
Confidence 678889999999999999999987421111 4667788888999999999999887664321 111 2221 122
Q ss_pred HH-----HHH-hCCChhHHHHHHHHH
Q 023326 202 IS-----LYD-HHDMPNKIIEVFADM 221 (284)
Q Consensus 202 I~-----~~~-~~G~~~~A~~l~~~M 221 (284)
|. .+. ..+++..|...|-+-
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 22 223 578888888887764
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.69 E-value=1e+02 Score=27.60 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=73.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCC--HH
Q 023326 128 AKALRILRKRGQWLRVIQVAKWMLSK--GQGAT---MGTYDTLLLAFDKDHRADEAESLWNMIL----HTQTRSIS--KR 196 (284)
Q Consensus 128 ~~~i~~~~~~g~~~~A~~l~~~M~~~--g~~p~---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~----~~~~~~~~--~~ 196 (284)
..+...|-..|++.+|..++.++... |.... +..|...+..|...+++..|..+++... ..+. +++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK-YESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHHHHH
Confidence 36677889999999999999998754 32222 5688888999999999999999988763 2222 222 24
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
.|..++..+...+++.+|...|.+..+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 578889999999999999998888754
No 251
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.02 E-value=1e+02 Score=26.23 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHR--ADEAESLWNMILHTQTRSISKRLFSRMISLYD 206 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~ 206 (284)
.+|.-|...|+.+||.+.++++....+.+ .+++..+..++-+.++ .+....++..|.+.+..+ =+.+..|+.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls-----~~q~~~Gf~ 244 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT-----VDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC-----HHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC-----HHHHHHHHH
Confidence 45566999999999999999997433222 4566677777776543 456778899999887775 345555554
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHH
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDTVRRI-ASAFQRVGQDD 247 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~l-l~a~~~~G~~d 247 (284)
+ .++.+.++.-. .|+...|-.- +..+...|-+.
T Consensus 245 ~------vl~~l~Dl~lD--iP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 245 R------IYNEIPDINLD--VPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp H------HHHHHHHHHHH--CTTHHHHHHHHHHHHHHHTSSC
T ss_pred H------HHHhccHhhcc--cccHHHHHHHHHHHHHHCCCCC
Confidence 4 44444444322 4887765544 44455666555
No 252
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=53.95 E-value=49 Score=25.05 Aligned_cols=97 Identities=11% Similarity=0.174 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCHHH---HHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM--PNKIIEVFADMEELGVRPDEDT---VRR 235 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~--~~~A~~l~~~M~~~g~~Pd~~t---y~~ 235 (284)
..+.+|.-|...|++++|.+.+++|...... ...++..+..++=+.++ .+.+..++..+...|+-+.... |..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~--~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~ 88 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 88 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH--HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHH
Confidence 4577899999999999999999998533222 34556777777777543 4678889999988886654443 333
Q ss_pred HHHHHHHcC-CHHHHHHHHHHhHHh
Q 023326 236 IASAFQRVG-QDDKQKLVLKKYLSK 259 (284)
Q Consensus 236 ll~a~~~~G-~~d~a~~l~~~m~~~ 259 (284)
++..+-... ++-.|..++.++..+
T Consensus 89 vl~~ldDl~lDiP~A~~~la~~v~~ 113 (152)
T 2ion_A 89 IYNEIPDINLDVPHSYSVLERFVEE 113 (152)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHhChHhccCccchHHHHHHHHHH
Confidence 443333221 222355555555433
No 253
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=53.15 E-value=75 Score=24.37 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCCHH-HHHHHHH------HHHhCCChhHHHHHHHHHHHC
Q 023326 158 TMGTYDTLLLAFDKDHRA------DEAESLWNMILHTQTRSISKR-LFSRMIS------LYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 158 ~~~ty~~Ll~~~~~~g~~------~~A~~l~~~m~~~~~~~~~~~-tyn~lI~------~~~~~G~~~~A~~l~~~M~~~ 224 (284)
|..+|-..+...-+.|+. ++..++|+.-+.. .||+.. .|-..|. .|-..+|+++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344555555555555666 6666677766553 233321 1111110 112238999999999999776
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 225 GVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 225 g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
+-+. ...|...-.=-.+.|+++.|.+++..-...
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 4344 555555444456899999999999877653
No 254
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=53.01 E-value=28 Score=33.84 Aligned_cols=51 Identities=10% Similarity=-0.090 Sum_probs=45.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHH
Q 023326 169 FDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADM 221 (284)
Q Consensus 169 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M 221 (284)
|-..|+++.|.++-.+-+.. .|.+-.+|-.|...|...|+++.|+-.++.|
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45689999999999988774 6778999999999999999999999999986
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=51.78 E-value=74 Score=24.60 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=38.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSK-GQGAT-------MGTYDTLLLAFDKDHRADEAESLWNMIL 186 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~-g~~p~-------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 186 (284)
++.+...|.++.|+-+.+.+... +..|+ ..++..+-+++-..+.+..|...|++-+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34477778888888877776543 12344 2355666677888888888888888753
No 256
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=49.32 E-value=16 Score=29.36 Aligned_cols=120 Identities=14% Similarity=0.031 Sum_probs=72.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHHHHcC---------CC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGT-------YDTLLLAFD--KDHRADEAESLWNMILHTQ---------TR 191 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t-------y~~Ll~~~~--~~g~~~~A~~l~~~m~~~~---------~~ 191 (284)
.|...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.+.+ ..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34456788999998899998888887776443 355555542 6688888777776643321 11
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT----------------VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t----------------y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
..+..-++. +...+..|+.+-+ +.+.+.|..++... -.+.|...+..|+.+.+..+++
T Consensus 88 ~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 88 DVYYRGQTA-LHIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp CSSEESBCH-HHHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCCH-HHHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 111121233 3444667886644 44445676666543 3345556667889876666664
No 257
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.02 E-value=1.1e+02 Score=24.97 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=59.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Q 023326 132 RILRKRGQWLRVIQVAKWMLSK--GQGAT----MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLY 205 (284)
Q Consensus 132 ~~~~~~g~~~~A~~l~~~M~~~--g~~p~----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~ 205 (284)
..+....++++|.+++++..+. +.++. .......+..=.....-.-+..+.+++.. . .....--..+..+
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~-~~~~~~r~~v~~L 101 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---S-NEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---C-SSHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-CCHHHHHHHHHHH
Confidence 3488889999999999887643 33321 11222333333333334445556666633 2 2555567778999
Q ss_pred HhCCChhHHHHHHHHHH---------HCCCCCCHHHHHH
Q 023326 206 DHHDMPNKIIEVFADME---------ELGVRPDEDTVRR 235 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~---------~~g~~Pd~~ty~~ 235 (284)
.+.|+.++|.++|=+.. ..+..-|...|..
T Consensus 102 ~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~ 140 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLT 140 (235)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHH
T ss_pred HHCCChhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 99999999999987643 3445545555544
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=48.95 E-value=80 Score=25.23 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 173 HRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 173 g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
+...++..+|..|...|+--.-...|-..-..+-..|++++|.++|+.=.+.+-+|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 346678888888887776543556677777888888888888888888777777773
No 259
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=48.31 E-value=28 Score=30.13 Aligned_cols=62 Identities=8% Similarity=0.010 Sum_probs=38.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTRS 192 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~~ 192 (284)
+|.-|...|+++||.+.++++....+.| .+++..+..++-+.. ..+.+-.++..|.+.+..+
T Consensus 17 ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is 79 (339)
T 1ug3_A 17 IIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS 79 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC
Confidence 4444999999999999998886433322 334455555554322 2344566777777766654
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.01 E-value=26 Score=31.38 Aligned_cols=104 Identities=12% Similarity=-0.005 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CHHHHHHHHHHHHhCCChhHHHHHHHHHHH---CCCCCCHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSI-SKRLFSRMISLYDHHDMPNKIIEVFADMEE---LGVRPDEDTVRR 235 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~---~g~~Pd~~ty~~ 235 (284)
.++..+-.-|.+.|+++.|.+++.++.+.-..+. -...|-.+|..+...|++..+...+.+... .|-.|+...---
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3667788889999999999999999987533321 345688889999999999999999998754 343343332211
Q ss_pred HHH--HHHHcCCHHHHHHHHHHhHHhcCCC
Q 023326 236 IAS--AFQRVGQDDKQKLVLKKYLSKWKYI 263 (284)
Q Consensus 236 ll~--a~~~~G~~d~a~~l~~~m~~~~~~~ 263 (284)
.-. .+...+++..|.+.|-+....+.+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~ 241 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSI 241 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCcc
Confidence 122 2346789999999998888877654
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=46.92 E-value=92 Score=24.04 Aligned_cols=106 Identities=11% Similarity=0.067 Sum_probs=65.2
Q ss_pred cCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-------HHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 153 KGQGATM--GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-------RLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 153 ~g~~p~~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-------~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
.|+.|-. .++-.=+..+...|.++.|.-+.+-++...-.++++ .++..+-.++...|++.+|...|++-..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444433 233344666778899999988877765442111131 2456777899999999999999998321
Q ss_pred CC-C----------------------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 224 LG-V----------------------RPDE--DTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 224 ~g-~----------------------~Pd~--~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.. . .+.. .=|. +-..|.+.|+.++|..+++.+..+
T Consensus 92 ~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkyk-ia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYK-LAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHCC--------------------CCCCHHHHHHH-HHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHhcCCCccccccccCCCcccccccchHHHHHH-HHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 0 1111 2233 456778999999999999876544
No 262
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.81 E-value=22 Score=27.97 Aligned_cols=38 Identities=16% Similarity=0.008 Sum_probs=19.7
Q ss_pred HHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHH
Q 023326 217 VFADMEELGVRPDED---TVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 217 l~~~M~~~g~~Pd~~---ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+++.+.+.|..++.. .-.+.|...+..|+.+.+..+++
T Consensus 131 ~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 171 (241)
T 1k1a_A 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ 171 (241)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHH
Confidence 344444556555432 23345555566777765555543
No 263
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=46.13 E-value=94 Score=23.75 Aligned_cols=61 Identities=8% Similarity=-0.017 Sum_probs=37.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTR 191 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~ 191 (284)
.+|.-|...|+.++|.+.++++....+.| .++...+-.++-+.. .-+.+-.++..|.. +..
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~-~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~l 76 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLNLGEMKS-GVPVLAVSLALEGKASHREMTSKLLSDLCG-TVM 76 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCSGGGG-HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTB
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCcccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCC
Confidence 45555999999999999999987544333 233334444443332 23345677777744 444
No 264
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.68 E-value=96 Score=23.50 Aligned_cols=51 Identities=8% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
+..+|..|...|+--.-...|-..-..+-..|++++|.++|+.=.+.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 566666666665543344446666666666666666666666655555555
No 265
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=43.59 E-value=96 Score=23.10 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=31.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 184 ~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.|.+.|.+. +.. =-.++..+...+..-.|.++++.+++.+...+..|.--.|..+...|.+
T Consensus 17 ~l~~~g~r~-T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKN-SKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--C-HHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCC-CHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344555542 221 3444555555555556666666666665555555555555555555543
No 266
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=42.55 E-value=45 Score=24.21 Aligned_cols=41 Identities=12% Similarity=0.060 Sum_probs=20.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 023326 147 AKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILH 187 (284)
Q Consensus 147 ~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 187 (284)
|+.+.+..+.|++..--.-|......++++.|..+...+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444555544444444444455666666666655554
No 267
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=41.77 E-value=77 Score=24.39 Aligned_cols=52 Identities=8% Similarity=0.114 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPD 229 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd 229 (284)
+..+|..|...|+--.-...|-..-..+-..|++.+|.+||..=.+.+-+|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4555666655555432344455555555556666666666665555555553
No 268
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=40.46 E-value=1e+02 Score=22.37 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=21.7
Q ss_pred HHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 200 RMISLYDHHD-MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 200 ~lI~~~~~~G-~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
.++..+...+ ..-.|.++++.+++.+...+..|..-.|..+...|.
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344444443 444455555555555544455554444444444443
No 269
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=40.39 E-value=38 Score=25.22 Aligned_cols=58 Identities=5% Similarity=-0.117 Sum_probs=36.3
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 023326 166 LLAFDKDH---RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEEL 224 (284)
Q Consensus 166 l~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~ 224 (284)
--++.++. ++.+|..+++++.+.+-. .....+=.|--|+.+.|++++|.+..+.+.+.
T Consensus 47 Aw~Lv~S~~~~d~~~GI~LLe~l~~~~~~-~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 47 AWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 33444444 455677888888775421 12333445556788888888888888877654
No 270
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.27 E-value=1.1e+02 Score=22.56 Aligned_cols=61 Identities=11% Similarity=0.056 Sum_probs=33.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 184 ~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.|.+.|.+. +.. =-.++..+...+..-.|.++++.+++.+...+..|..-.|..+...|.+
T Consensus 12 ~l~~~g~r~-T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRI-TPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCC-CHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCC-CHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345555553 322 2444455555555556667777776666555666655555555555544
No 271
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=40.08 E-value=17 Score=29.29 Aligned_cols=120 Identities=13% Similarity=-0.065 Sum_probs=71.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCC--------
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATM-------GTYDTLLLAFDK--DHRADEAESLWNMILHTQTRS-------- 192 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~-------~ty~~Ll~~~~~--~g~~~~A~~l~~~m~~~~~~~-------- 192 (284)
.|...++.|+.+....+++.+.+.|..++. .-.+.|..++.. .|+.+-++.+++.-.+.+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 345567889998888889988888876554 344555555432 278877777776655433110
Q ss_pred -CCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHH
Q 023326 193 -ISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT---------------VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 193 -~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t---------------y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
.|..-++. +...+..|+.+-+. .+.+.|..++... -.+.|...+..|+.+.+..+++
T Consensus 85 ~~d~~g~t~-L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 85 DEFYQGHSA-LHIAIEKRSLQCVK----LLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp STTTTTCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred cccccCCCH-HHHHHHcCCHHHHH----HHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01122333 34445677765444 4445576655442 2345555667888876666654
No 272
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=39.60 E-value=86 Score=23.21 Aligned_cols=60 Identities=10% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 184 MILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 184 ~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.|.+.|.+. +.. =-.++..+...+ .-.|.++++++++.+...+..|.---|..+...|.+
T Consensus 9 ~L~~~g~r~-T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRL-TPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCC-CHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCc-CHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 344555553 322 233444444444 446667777776666666666655555555555543
No 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.89 E-value=1.3e+02 Score=26.22 Aligned_cols=98 Identities=10% Similarity=0.166 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM--PNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~--~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
...+.+|.-|...|++++|.+.+++|..-... ...++.++..+.=+.++ .+.+.+++..+...|+-+.......+.
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh--he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH--HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcch--HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34688899999999999999999998643222 34556677777766543 467888999999888776655555555
Q ss_pred HHHHHcCCHH----HHHHHHHHhHHh
Q 023326 238 SAFQRVGQDD----KQKLVLKKYLSK 259 (284)
Q Consensus 238 ~a~~~~G~~d----~a~~l~~~m~~~ 259 (284)
..+...-++. .|..++.++..+
T Consensus 296 ~vl~~ldDl~lDiP~A~~~la~~var 321 (358)
T 3eiq_C 296 RIYNEIPDINLDVPHSYSVLERFVEE 321 (358)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHHH
Confidence 4444433322 355566555533
No 274
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=37.50 E-value=30 Score=30.41 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCC
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKG-QGATMGTYDTLLLAFDKDH-RADEAESLWNMILHTQTR 191 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g-~~p~~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~ 191 (284)
.+|.-|...|++++|.+.++++.... +.| .+.+..+..++-+.. .-+.+-.++..|...+..
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~-~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRAPKHFLP-EMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCCGGGHH-HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCchhhHH-HHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 34455999999999999999985321 111 345555555554432 123455667777776654
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=37.09 E-value=1.3e+02 Score=25.23 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=57.5
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----
Q 023326 120 TEF-PLIAAAKALRILRKRGQWLRVIQVAKWMLSKG--QGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS---- 192 (284)
Q Consensus 120 ~~p-~~~~y~~~i~~~~~~g~~~~A~~l~~~M~~~g--~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~---- 192 (284)
..| |...-..++..+|-.|+|++|..-++...+.. ..|-+.+|-.+|.+ +..=.+....+..|
T Consensus 26 ~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----------E~~R~~vfaG~~~P~~~g 95 (273)
T 1zbp_A 26 ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----------AQARKDFAQGAATAKVLG 95 (273)
T ss_dssp TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----------HHHHHHHTTSCCCEECCC
T ss_pred hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----------HHHHHHHHcCCCCCCCCC
Confidence 344 55566688899999999999998888877652 23334455555533 33333343333331
Q ss_pred CCHHHHHHHHHHHHhC--CChhHHHHHHHHHHHC
Q 023326 193 ISKRLFSRMISLYDHH--DMPNKIIEVFADMEEL 224 (284)
Q Consensus 193 ~~~~tyn~lI~~~~~~--G~~~~A~~l~~~M~~~ 224 (284)
....-...||.+.... |+.++|.++-.+..+.
T Consensus 96 ~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 96 ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1222245666666544 8999998887776543
No 276
>3vu7_H DNA repair protein REV1; DNA replication, translesion DNA synthesis, damage tolerance, DNA repair, replication; HET: DNA; 2.80A {Homo sapiens} PDB: 2lsj_A*
Probab=36.30 E-value=1e+02 Score=22.50 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 023326 107 AVYGALDKWTAWETEFPL---IAAAKALRILRKRGQWLRVIQVAKWMLS 152 (284)
Q Consensus 107 ~vf~~l~~~~~~~~~p~~---~~y~~~i~~~~~~g~~~~A~~l~~~M~~ 152 (284)
++-+.+.+|.....+|.. ..+...+..+...+++++|..++++|..
T Consensus 40 evK~lL~~Wv~s~~~P~~~DV~~l~~yL~~lVeek~Lek~~~vlk~l~r 88 (124)
T 3vu7_H 40 DVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKR 88 (124)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 344556667776677754 4444666667778999999999887754
No 277
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=35.73 E-value=2e+02 Score=24.37 Aligned_cols=127 Identities=12% Similarity=0.127 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH-----HHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR-----LFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-----tyn~ 200 (284)
.|..+|.++...-.-.+|..+.+-|. |...|..++.-+|..-. ..++....+.|.++....+.. ++. .|--
T Consensus 75 ~f~~ll~~l~~~~~~~DA~~L~~A~k--g~Gtde~~lieIL~~Rs-~~ql~~I~~aY~~~y~~~Le~-di~~e~sG~~~~ 150 (320)
T 1yii_A 75 KFETLMVSLMRPARIFDAHALKHAIK--GAGTNEKVLTEILASRT-PAEVQNIKQVYMQEYEANLED-KITGETSGHFQR 150 (320)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHS--SSSCCHHHHHHHHHHSC-HHHHHHHHHHHHHHHSSCHHH-HHHHHCCHHHHH
T ss_pred hHHHHHHHHccChHHHHHHHHHHHhc--cCCCchHHHhHHHhcCC-HHHHHHHHHHHHHhhCcCHHH-HHHhhcCCcHHH
Confidence 46666666776666788999999884 44567766655553221 124555555566554332221 111 1444
Q ss_pred HHHHHHhCCCh-----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 201 MISLYDHHDMP-----------NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 201 lI~~~~~~G~~-----------~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++-+.++..+. .+|..+++.|+. |...|..++..+|. . ........+++...+.|+
T Consensus 151 ~l~~l~~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~---t-Rs~~~L~~i~~~Y~~~~g 217 (320)
T 1yii_A 151 LLVVLLQANRDPDGRVDEALVEKDAQVLFRAGEL-KWGTDEETFITILG---T-RSVSHLRRVFDKYMTISG 217 (320)
T ss_dssp HHHHHHTTCCCCSCCCCHHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHH---H-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhccCccccCCchHHHHHHHHHHHHHhc-CCCCCHHHHHHHHH---h-CCHHHHHHHHHHHHHHHC
Confidence 55555554431 347788888763 45568777666653 3 334456666766666655
No 278
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=35.65 E-value=1.2e+02 Score=22.52 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 211 PNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 211 ~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
.-.|.++++.+++.+...+..|..-.|..+...|.
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444555555444444444444444444444433
No 279
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=35.04 E-value=43 Score=24.95 Aligned_cols=60 Identities=10% Similarity=-0.037 Sum_probs=41.9
Q ss_pred HHHHcC---CHHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHH
Q 023326 133 ILRKRG---QWLRVIQVAKWMLSKGQGA-T-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKR 196 (284)
Q Consensus 133 ~~~~~g---~~~~A~~l~~~M~~~g~~p-~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 196 (284)
++++.. +..+++.+++++.+.+ | . -...=-|--|+.+.|++++|.+..+.+.+. .|.|..
T Consensus 49 ~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~Q 113 (134)
T 3o48_A 49 GLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 113 (134)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHH
Confidence 355544 4568899999988765 4 2 223334445789999999999999999875 564544
No 280
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=33.83 E-value=3.5e+02 Score=26.59 Aligned_cols=91 Identities=8% Similarity=0.026 Sum_probs=59.0
Q ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHc----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHH
Q 023326 128 AKALRILRKRGQ---WLRVIQVAKWMLSK----GQGATMG--TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLF 198 (284)
Q Consensus 128 ~~~i~~~~~~g~---~~~A~~l~~~M~~~----g~~p~~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ty 198 (284)
..++...|+.|. .++|.+.|+..... .+.||.. +|+..+ |.-++ |+.+.+.+....+..--
T Consensus 684 ~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~----~~~l~~~y~~~~~~~ek 753 (897)
T 2xdt_A 684 SQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEG----WDFLYSKYQFSLSSTEK 753 (897)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHH----HHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHH----HHHHHHHHHccCCHHHH
Confidence 467777888886 66889999876654 2456653 444433 44333 44444444444355556
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCC-CCC
Q 023326 199 SRMISLYDHHDMPNKIIEVFADMEELG-VRP 228 (284)
Q Consensus 199 n~lI~~~~~~G~~~~A~~l~~~M~~~g-~~P 228 (284)
+.++.+++...+.+...++++...... +++
T Consensus 754 ~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~ 784 (897)
T 2xdt_A 754 SQIEFALCRTQNKEKLQWLLDESFKGDKIKT 784 (897)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSSSCG
T ss_pred HHHHHHhccCCCHHHHHHHHHHHhCCCCCcH
Confidence 888999999999998888888877533 544
No 281
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=32.62 E-value=30 Score=25.47 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGATMGTY--DTLLLAFDKDHRADEAESLWNMILHTQTRS--ISKRLFSRMISLY 205 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty--~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~tyn~lI~~~ 205 (284)
.|...++.|+.+....+++. .+..++.... .+.|..-+..|+.+-. +.+++.|..+ .+..-++ .+...
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A 82 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVV----EYLLQHGADVHAKDKGGLV-PLHNA 82 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHH----HHHHhcCCCCCccCCCCCC-HHHHH
Confidence 34445667777666655543 2222222111 1334444566776544 4444455442 1222122 33444
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHH
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTV--RRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty--~~ll~a~~~~G~~d~a~~l~~ 254 (284)
+..|+.+-+ +.+.+.|..++.... .+.|...+..|+.+.+..+++
T Consensus 83 ~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 83 CSYGHYEVA----ELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp HHTTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCcHHHH----HHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 566776533 444456655543321 234555567788776555553
No 282
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.17 E-value=95 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.367 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 023326 176 DEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP 228 (284)
Q Consensus 176 ~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P 228 (284)
+++..+|..|...|+--.-...|-..-..+-..|++.+|.+||+.=.+.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 46677888887777654355567777777788888888888888776666666
No 283
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=32.13 E-value=33 Score=27.82 Aligned_cols=120 Identities=9% Similarity=-0.033 Sum_probs=70.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH---------cCCC
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLSKGQGA-------TMGTYDTLLLAFD--KDHRADEAESLWNMILH---------TQTR 191 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~~g~~p-------~~~ty~~Ll~~~~--~~g~~~~A~~l~~~m~~---------~~~~ 191 (284)
.|...++.|+.+....+++...+.|... |..-++.|..++. +.|+.+-++.+++.-.+ ....
T Consensus 16 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~ 95 (273)
T 2pnn_A 16 SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYT 95 (273)
T ss_dssp HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccc
Confidence 4445677888888888888877776433 3344566666664 35888887777776432 2211
Q ss_pred CCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHH
Q 023326 192 SISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT----------------VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 192 ~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t----------------y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
..+..-++.|. ..+..|+.+-+.-+ .+.|..++... -.+.|...+..|+.+.+..+++
T Consensus 96 ~~d~~g~tpL~-~A~~~g~~~~v~~L----l~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 96 DSYYKGQTALH-IAIERRNMTLVTLL----VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp STTTTTCCHHH-HHHHTTCHHHHHHH----HHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCCCHHH-HHHHcCCHHHHHHH----HHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11222234444 34567876654444 44565555432 2345555667888876666654
No 284
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.76 E-value=4.2e+02 Score=26.78 Aligned_cols=124 Identities=11% Similarity=0.004 Sum_probs=81.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------------
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTR----------------- 191 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~----------------- 191 (284)
.++..+.+.|..+-|.++..+... |...-=.+=.+|...|++++|.++|.+-.. ++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 456667777877777766554332 333222233456789999999999865311 110
Q ss_pred -----CCCHHHHHHHHHHHHhCCChhHHHHHHHHH-HHCCCCC-CHH--HHHHHHHHHHHcCCHHHHHHHHHHhHH
Q 023326 192 -----SISKRLFSRMISLYDHHDMPNKIIEVFADM-EELGVRP-DED--TVRRIASAFQRVGQDDKQKLVLKKYLS 258 (284)
Q Consensus 192 -----~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M-~~~g~~P-d~~--ty~~ll~a~~~~G~~d~a~~l~~~m~~ 258 (284)
..-..=|.-++..|-++|.++.+++.-..- ...+-.+ +.. .|..+++++...|++|+|...+-.+..
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 001123788999999999999999876543 3333222 222 578899999999999999998877653
No 285
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.68 E-value=29 Score=27.03 Aligned_cols=9 Identities=11% Similarity=0.043 Sum_probs=3.7
Q ss_pred HHHHHHcCC
Q 023326 131 LRILRKRGQ 139 (284)
Q Consensus 131 i~~~~~~g~ 139 (284)
|...++.|+
T Consensus 46 L~~A~~~~~ 54 (240)
T 3eu9_A 46 LHWAAINNR 54 (240)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhCC
Confidence 333444444
No 286
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=31.63 E-value=2e+02 Score=22.93 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=46.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023326 137 RGQWLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 137 ~g~~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 192 (284)
.+...++.++|..|...|+.-. +..|-.--..+-..|++.+|.++|+.=++.+..|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3447799999999999987554 4567777777788999999999999999999988
No 287
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.32 E-value=1.7e+02 Score=22.08 Aligned_cols=47 Identities=19% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 023326 141 LRVIQVAKW-MLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT 188 (284)
Q Consensus 141 ~~A~~l~~~-M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 188 (284)
+++++-+.+ +.+.|++.+..= -.++..+...+..-.|.+|++.+.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 444444433 334566655432 34445555555555566666666554
No 288
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=31.09 E-value=2.5e+02 Score=23.97 Aligned_cols=127 Identities=11% Similarity=0.037 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCH-----HHHHH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISK-----RLFSR 200 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-----~tyn~ 200 (284)
.|..+|.++...---.+|..+++-|.. ...|..++.-+|..-. ..++....+.|..+-...+.. ++ -.|--
T Consensus 82 ~f~~ll~~l~~~~~~~DA~~L~~A~~g--~Gtde~~lieIL~tRs-~~ql~~i~~~Y~~~yg~sLe~-dI~~e~sG~~~~ 157 (327)
T 1w3w_A 82 KFERLIVALMYPPYRYEAKELHDAMKG--LGTKEGVIIEILASRT-KNQLREIMKAYEEDYGSSLEE-DIQADTSGYLER 157 (327)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHHHHHS--SSCCHHHHHHHHHHSC-HHHHHHHHHHHHHHHSSCHHH-HHHHHCCHHHHH
T ss_pred cHHHHHHHhcCCHHHHHHHHHHHHhhc--cCCCHHHHHHHHHhCC-HHHHHHHHHHHHHHhCccHHH-HHhhccCchHHH
Confidence 466677777776667899999999984 4467766665553221 124555555566554332221 11 12555
Q ss_pred HHHHHHhCCCh------------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 201 MISLYDHHDMP------------NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 201 lI~~~~~~G~~------------~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
++-+.++..+. ++|..+++.|+ .|...|..++..+|.. ........++++..+.|+
T Consensus 158 ~L~~lv~~~r~~~~~~vd~~~a~~DA~~L~~A~~-~~~GTde~~lirIl~t----Rs~~~L~~i~~~Y~~~~g 225 (327)
T 1w3w_A 158 ILVCLLQGSRDDVSSFVDPALALQDAQDLYAAGE-KIRGTDEMKFITILCT----RSATHLLRVFEEYEKIAN 225 (327)
T ss_dssp HHHHHHSCCCCCCCSCCCHHHHHHHHHHHHHHHH-CSSSCCHHHHHHHHHH----SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhccCCcccccCHHHHHHHHHHHHHHhh-CcCCCcHhHhhHHHhc----CCHHHHHHHHHHHHHHHC
Confidence 55555554332 24778888875 3455687776666643 333446667777776665
No 289
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.81 E-value=31 Score=26.57 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC-hhHHHHHHHHHHH
Q 023326 161 TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM-PNKIIEVFADMEE 223 (284)
Q Consensus 161 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~-~~~A~~l~~~M~~ 223 (284)
....+|.-|-..+++++|...++++...... ...+...+-.++-+... -+.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~--~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGG--GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3466777787888888888888877532222 22222333333333221 2344566666643
No 290
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=30.80 E-value=86 Score=22.67 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 201 MISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 201 lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
++..+...+..-.|.++++.+++.+...+..|.--.|..+...|.+
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 4444444455556666666666666555666655555555555543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.41 E-value=1.8e+02 Score=23.54 Aligned_cols=92 Identities=8% Similarity=-0.077 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC---CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 163 DTLLLAFDKDHRADEAESLWNMILHTQ--TRSI---SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 163 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~---~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
---|+.+....++++|.+++++..+.- ..+. ....-...|..-.....-.-+..+.+++. . .++...-...+
T Consensus 22 ~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v 98 (235)
T 2d2s_A 22 VEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHH
Confidence 345778888999999999987664321 1110 00112223333333333334444555553 3 56677788888
Q ss_pred HHHHHcCCHHHHHHHHHHhH
Q 023326 238 SAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 238 ~a~~~~G~~d~a~~l~~~m~ 257 (284)
+.+.+.|+-++|..+|=+..
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 99999999999999985544
No 292
>4fjo_A DNA repair protein REV1; translesion synthesis, transferase -DNA binding protein COMP transferase-DNA binding protein complex; HET: DNA; 2.72A {Mus musculus} PDB: 2lsg_A* 2lsk_A* 2lsy_A*
Probab=30.29 E-value=1.4e+02 Score=20.66 Aligned_cols=46 Identities=15% Similarity=0.117 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 023326 106 HAVYGALDKWTAWETEFPL---IAAAKALRILRKRGQWLRVIQVAKWML 151 (284)
Q Consensus 106 ~~vf~~l~~~~~~~~~p~~---~~y~~~i~~~~~~g~~~~A~~l~~~M~ 151 (284)
.++-+.+..|.....+|.. ..+...+..+...+++++|..++++|.
T Consensus 12 ~dvr~~l~~Wv~~~~~P~~~DV~~l~~yL~~lv~~~~lek~~~vlk~l~ 60 (97)
T 4fjo_A 12 SDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMK 60 (97)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccCHHHHHHHHHHHH
Confidence 3455667778777777854 444566666777888999988877764
No 293
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.17 E-value=74 Score=23.39 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=26.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 200 RMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 200 ~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.++..+...+..-.|.++++.+++.+...+..|.--.|..+...|.+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34444444444555666666666666555666655555555555543
No 294
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.62 E-value=91 Score=22.53 Aligned_cols=41 Identities=2% Similarity=-0.146 Sum_probs=23.7
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 182 WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 182 ~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
|+.+.+..+.+ ++..--.-|......|+++.|.++...+..
T Consensus 49 fdkLn~~~Ls~-~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSI-PVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCH-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555444433 444444445555666777777777766654
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.99 E-value=2.3e+02 Score=22.93 Aligned_cols=53 Identities=8% Similarity=0.106 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 023326 140 WLRVIQVAKWMLSKGQGAT-MGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS 192 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g~~p~-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 192 (284)
.+++..+|..|...|+.-. +..|-.--..+-..|++.+|.++|+.=++.+..|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4588899999999987654 4567777777788999999999999999999988
No 296
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.22 E-value=1.1e+02 Score=19.65 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 023326 127 AAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRA 175 (284)
Q Consensus 127 y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~ 175 (284)
++.+++.+++..-+++++..+++..+.| ..+..+|---+..+++..-+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~ 52 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFL 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHH
Confidence 4566677777777888888888888877 34666677767777665433
No 297
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.30 E-value=1.7e+02 Score=24.83 Aligned_cols=97 Identities=11% Similarity=0.160 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 023326 160 GTYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDM--PNKIIEVFADMEELGVRPDEDTVRRIA 237 (284)
Q Consensus 160 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~--~~~A~~l~~~M~~~g~~Pd~~ty~~ll 237 (284)
.....+|.-|...|++++|.+.++++...... ...++.++..+.=+.++ .+.+.+++..+...|+-+.......+-
T Consensus 167 kki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~--~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~ 244 (307)
T 2zu6_B 167 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYE 244 (307)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch--HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 34568888898999999999999998633222 34556777777776543 466788999998888665544433333
Q ss_pred HHHHHcCCH----HHHHHHHHHhHH
Q 023326 238 SAFQRVGQD----DKQKLVLKKYLS 258 (284)
Q Consensus 238 ~a~~~~G~~----d~a~~l~~~m~~ 258 (284)
..+....++ -.|..++.++..
T Consensus 245 ~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 245 RIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHhccHhhcccccHHHHHHHHHH
Confidence 333332222 235555555543
No 298
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.12 E-value=1.2e+02 Score=28.38 Aligned_cols=69 Identities=12% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 023326 178 AESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQ 249 (284)
Q Consensus 178 A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a 249 (284)
.+....+++...-. .+..--.-++..|.+.|..+.|.++++.|-..-+. +...| .-|..|+++|+++.+
T Consensus 500 gr~~IselLpr~Pl-~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 500 KKMVIAELLPHYPF-VTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHGGGCCC-CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHHhccCCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHHHHcCChhhc
Confidence 33334444443322 13334566777777777777777777776544322 33344 445566777776654
No 299
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.77 E-value=2.7e+02 Score=24.79 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=29.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 023326 206 DHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQ 245 (284)
Q Consensus 206 ~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~ 245 (284)
.+.++.+.|+.++.+|.+.|..|..+.=..++.|.-..|.
T Consensus 266 irgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 266 VRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 3568999999999999999987776665555555544443
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=26.12 E-value=75 Score=24.67 Aligned_cols=121 Identities=10% Similarity=0.060 Sum_probs=71.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMGT--YDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMISL 204 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~~ 204 (284)
..|..-++.|+.+-+..+++.+.+.|..++... -.+.|...+..|+.+- ++.+++.|..+. +..- .+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g-~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV----VRLLVTAGASPMALDRHG-QTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTS-CCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHH----HHHHHHcCCCccccCCCC-CCHHHH
Confidence 356667888999998888888888887766432 2234455556777754 445555665531 2222 344555
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 023326 205 YDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 205 ~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~ 254 (284)
.+..|+.+-+..+++.....++.++.. .-.+.+...+..|..+....+++
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence 567788776666655543333333322 23345555567788776655554
No 301
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=86 Score=18.26 Aligned_cols=31 Identities=3% Similarity=0.027 Sum_probs=14.9
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHH
Q 023326 182 WNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 182 ~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
+.+|+++|... ...+.++...|+++.|.+.+
T Consensus 13 v~~L~~MGF~~------~~a~~AL~~~~n~e~A~~~L 43 (47)
T 2ekk_A 13 LQQLMDMGFTR------EHAMEALLNTSTMEQATEYL 43 (47)
T ss_dssp HHHHHHHHCCH------HHHHHHHHHSCSHHHHHHHH
T ss_pred HHHHHHcCCCH------HHHHHHHHHcCCHHHHHHHH
Confidence 45555555432 22334444445666665543
No 302
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.96 E-value=95 Score=19.09 Aligned_cols=36 Identities=6% Similarity=0.068 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHhCCC--hhHHHHHHHHH
Q 023326 180 SLWNMILHTQTRSISKRLFSRMISLYDHHDM--PNKIIEVFADM 221 (284)
Q Consensus 180 ~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~--~~~A~~l~~~M 221 (284)
+.++.++++|+.+ . -...+.-+.|. ++.|++.+.+|
T Consensus 11 qmlq~L~eMGFd~-e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCDQ-E-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCCH-H-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCH-H-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 4456666676653 2 33344455555 77777777666
No 303
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=24.65 E-value=1.9e+02 Score=20.51 Aligned_cols=76 Identities=11% Similarity=0.063 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.-++|..|-+-+...+. ...+--+=+..+...|++++|..+.+.+ +.||...+-+|-. .+.|..+++..-+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 56788888887777654 2222233446677889999999877664 4899999887754 4778888777766
Q ss_pred HHhHH
Q 023326 254 KKYLS 258 (284)
Q Consensus 254 ~~m~~ 258 (284)
.+|..
T Consensus 93 ~~la~ 97 (116)
T 2p58_C 93 NRLAR 97 (116)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 55543
No 304
>3zvk_A VAPC2, toxin of toxin-antitoxin system; antitoxin-toxin-DNA complex, protein-DNA complex; HET: DNA MES; 2.50A {Rickettsia felis}
Probab=24.65 E-value=1.8e+02 Score=20.42 Aligned_cols=46 Identities=7% Similarity=-0.028 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 177 EAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 177 ~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
.+.+.++.....+..-.+..++.-+..+..+.+..+++.+.++++.
T Consensus 20 ~~~~~l~~~~~~~~~~is~i~~~El~~~~~~~~~~~~~~~~l~~~l 65 (134)
T 3zvk_A 20 SYYNNLELLAKNNTIAISSIVLAELQYGVSKSKKKEQNQSKLDIFL 65 (134)
T ss_dssp HHHHHHHHHHTTSEEEEEHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCCcEEeeheeHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445555443211111255556666666666555555555555544
No 305
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=24.47 E-value=1.9e+02 Score=20.47 Aligned_cols=77 Identities=9% Similarity=-0.042 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
.-++|..|-+-+...+. ...+--+=+..+...|++++|..+.+.+ +.||...+-+|-. .+.|..+++..-+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 56788888887777654 2222233446677889999999876554 4899999887744 4788888887777
Q ss_pred HHhHHh
Q 023326 254 KKYLSK 259 (284)
Q Consensus 254 ~~m~~~ 259 (284)
.+|..+
T Consensus 92 ~~la~s 97 (115)
T 2uwj_G 92 AGLGGS 97 (115)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 666543
No 306
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=23.94 E-value=3.6e+02 Score=23.52 Aligned_cols=92 Identities=8% Similarity=-0.055 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHcC----CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCHHH
Q 023326 127 AAKALRILRKRGQ---WLRVIQVAKWMLSKG----QGATMG--TYDTLLLAFDKDHRADEAESLWNMILHTQTRSISKRL 197 (284)
Q Consensus 127 y~~~i~~~~~~g~---~~~A~~l~~~M~~~g----~~p~~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~t 197 (284)
-..++...|..|. .++|.++|+...+.+ +.||.. +|+..+. .-++-..+++.... ..+..-
T Consensus 200 R~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~------~~~~~~~l~~~y~~----s~~~~e 269 (419)
T 3rjo_A 200 RSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQ------STEGWDFLYSKYQF----SLSSTE 269 (419)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTT------SHHHHHHHHHHHHH----CCCHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeC------CHHHHHHHHHHHhc----CCCHHH
Confidence 3477888888886 678889998766542 667743 3333221 22222233333333 234444
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCC-CC
Q 023326 198 FSRMISLYDHHDMPNKIIEVFADMEELGV-RP 228 (284)
Q Consensus 198 yn~lI~~~~~~G~~~~A~~l~~~M~~~g~-~P 228 (284)
=+.++.+++...+.+...++++......+ ++
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~ 301 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFKGDKIKT 301 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCG
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCch
Confidence 57778888888888877777777665553 44
No 307
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=23.91 E-value=21 Score=29.58 Aligned_cols=84 Identities=13% Similarity=0.156 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHcC--CC-----CCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 140 WLRVIQVAKWMLSKG--QG-----ATMGTYDTLLLAFDKDH---------RADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g--~~-----p~~~ty~~Ll~~~~~~g---------~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.+.|..++.+|--.. +- -...-|-.+-.+|++.| +++.-.++++..++.|+.-.-..+|+++|+
T Consensus 170 vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSIID 249 (275)
T 3m6y_A 170 IKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSIID 249 (275)
T ss_dssp HHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceecc
Confidence 678899888886432 11 23567889999999987 567777888888888887444456888887
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~ 223 (284)
--...-+.+++.++|..|++
T Consensus 250 k~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 250 KETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66666678888888887764
No 308
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=23.48 E-value=20 Score=29.33 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHcC--CC-----CCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 023326 140 WLRVIQVAKWMLSKG--QG-----ATMGTYDTLLLAFDKDH---------RADEAESLWNMILHTQTRSISKRLFSRMIS 203 (284)
Q Consensus 140 ~~~A~~l~~~M~~~g--~~-----p~~~ty~~Ll~~~~~~g---------~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~ 203 (284)
.+.|..++.+|--.. +- -...-|-.+-.+|++.| +++.-.++++..++.|+.-.-..+|+++|+
T Consensus 147 vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssIID 226 (249)
T 3m0z_A 147 LETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSIID 226 (249)
T ss_dssp HHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGBC
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceecc
Confidence 678888888886432 11 23567889999999987 567778888888888887444456888887
Q ss_pred HHHhCCChhHHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~ 223 (284)
--...-+.++..++|..|++
T Consensus 227 k~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 227 KASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp TTTCCBCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH
Confidence 66667788888888888765
No 309
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.28 E-value=1.5e+02 Score=18.97 Aligned_cols=61 Identities=11% Similarity=0.196 Sum_probs=36.2
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 023326 184 MILHTQTRSISKRLFSRMISLYDHHD-MPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQD 246 (284)
Q Consensus 184 ~m~~~~~~~~~~~tyn~lI~~~~~~G-~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~ 246 (284)
.|.+.|.+. +.. --.++..+...+ ..-.+.++++.+.+.+...+..|..-.|..+...|.+
T Consensus 7 ~l~~~g~~~-t~~-r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKV-TLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCC-CHH-HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCc-CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 355566554 333 244555555543 4556777777777776666667766666666666553
No 310
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=23.23 E-value=1.5e+02 Score=24.04 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCHH------HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 023326 175 ADEAESLWNMILHTQTRSISKR------LFSRMISLYDHHDMPNKIIEVFADMEE 223 (284)
Q Consensus 175 ~~~A~~l~~~m~~~~~~~~~~~------tyn~lI~~~~~~G~~~~A~~l~~~M~~ 223 (284)
++.|..+|+.+.+....+.+.. .=-..+..|.+.|.+++|.++|++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 4667777777765543221110 012344556667777777777776543
No 311
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=23.14 E-value=40 Score=21.26 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-Hhc
Q 023326 141 LRVIQVAKWMLSK-GQGATMGTYDTLLLAF-DKD 172 (284)
Q Consensus 141 ~~A~~l~~~M~~~-g~~p~~~ty~~Ll~~~-~~~ 172 (284)
++|.+.|.+|++. ++.|+ -||.-.|..+ ++.
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~D 35 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISELGTRD 35 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCC
Confidence 4666666666654 34333 4666666666 443
No 312
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=23.06 E-value=56 Score=26.09 Aligned_cols=116 Identities=7% Similarity=-0.040 Sum_probs=62.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGT------------YDTLLLAFDKDHRADEAESLWNMILHTQTRS--ISKR 196 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~t------------y~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~ 196 (284)
|...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-...+++. .|..+ .+..
T Consensus 109 L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~ 181 (285)
T 1wdy_A 109 FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNM 181 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTT
T ss_pred HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCC
Confidence 34455666643 5556666666554320 11334444556776655544432 13321 1222
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDT--VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t--y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
-++.+ ...+..|+.+...++++.+.+.|..++... -.+.|...++.|+.+.+..+++
T Consensus 182 g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 182 GRNAL-IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHH-HHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 22333 333556776666777788888887665432 2345555667788876666654
No 313
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=22.87 E-value=2.5e+02 Score=21.27 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 197 LFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 197 tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
.++..++.....|.-|.-.+++.++.. ..+|+....-.+-.||.+.|+..++.+++.+.=++
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 378889999999999999999998533 45788888899999999999999999999887665
No 314
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=22.48 E-value=75 Score=17.32 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=17.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 023326 130 ALRILRKRGQWLRVIQVAKWMLS 152 (284)
Q Consensus 130 ~i~~~~~~g~~~~A~~l~~~M~~ 152 (284)
-++-|.+.|+.++|..+-.+|+.
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~k~ 30 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTLKN 30 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 34558889999999888777763
No 315
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=22.25 E-value=2.6e+02 Score=21.26 Aligned_cols=54 Identities=13% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGA--TMGTYDTLLL-A-----FDKDHRADEAESLWNMILH 187 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p--~~~ty~~Ll~-~-----~~~~g~~~~A~~l~~~m~~ 187 (284)
+...|++-+|.++|++.-...-.| ....|..||. . ..+.|+...|..++.+-..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 444477888888888777665455 4456666666 1 2345777777777666543
No 316
>3tnd_A TRNA(FMet)-specific endonuclease VAPC; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=22.05 E-value=1.9e+02 Score=20.24 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 023326 194 SKRLFSRMISLYDHHDMPNKIIEVFADME 222 (284)
Q Consensus 194 ~~~tyn~lI~~~~~~G~~~~A~~l~~~M~ 222 (284)
+..++.-+..+..+.+..++..+.++++.
T Consensus 36 S~i~~~El~~~~~~~~~~~~~~~~l~~~l 64 (132)
T 3tnd_A 36 SSVTLMELIYGAEKSQMPERNLAVIEGFV 64 (132)
T ss_dssp EHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45556666666666555444455555544
No 317
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.77 E-value=4.1e+02 Score=23.32 Aligned_cols=98 Identities=8% Similarity=-0.038 Sum_probs=68.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----HHHHHHHHHHHHhCCChhHHHHHHHHHHHC--CCCCCHHHHHH--
Q 023326 164 TLLLAFDKDHRADEAESLWNMILHTQTRSIS----KRLFSRMISLYDHHDMPNKIIEVFADMEEL--GVRPDEDTVRR-- 235 (284)
Q Consensus 164 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~--g~~Pd~~ty~~-- 235 (284)
-|...|...|++.+|.+++..+.+.--..++ ..+|-.-|..|...|++.++..++.+-... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6788899999999999999888764222212 345788889999999999999998875432 23344443322
Q ss_pred HHHH--HH-HcCCHHHHHHHHHHhHHhcC
Q 023326 236 IASA--FQ-RVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 236 ll~a--~~-~~G~~d~a~~l~~~m~~~~~ 261 (284)
+..| +. ..+++..|...|-+-.+.|.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 2222 33 67899999888876655554
No 318
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=21.70 E-value=52 Score=25.65 Aligned_cols=116 Identities=6% Similarity=-0.035 Sum_probs=68.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMG----------------TYDTLLLAFDKDHRADEAESLWNMILHTQTRSI- 193 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~----------------ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~- 193 (284)
|..-+..|+.+ +++.+.+.|..++.. -.+. |..-+..|+.+-++ .+++.|..+.
T Consensus 79 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~ga~~~~ 149 (232)
T 2rfa_A 79 LHIAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNLIYYGEHP-LSFAACVGSEEIVR----LLIEHGADIRA 149 (232)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH-HHHHHHHTCHHHHH----HHHHTTCCTTC
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeecccccccCCCCH-HHHHHHcCCHHHHH----HHHHCCCCCCC
Confidence 44455667754 555666677666542 2333 44445567765544 4445555421
Q ss_pred -CHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHhH
Q 023326 194 -SKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRP---------DEDTVRRIASAFQRVGQDDKQKLVLKKYL 257 (284)
Q Consensus 194 -~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~P---------d~~ty~~ll~a~~~~G~~d~a~~l~~~m~ 257 (284)
|.. -.+.+...+..|+.+-+.++++-+.+.|..+ |..-.+ -+...++.|+.+.+..+++.=.
T Consensus 150 ~d~~-g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 150 QDSL-GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp CCTT-SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCC-CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCc
Confidence 222 1344555678899998888888888888643 333333 4555567889887777665543
No 319
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.25 E-value=73 Score=22.90 Aligned_cols=113 Identities=11% Similarity=-0.059 Sum_probs=62.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGA---TMGTYDTLLLAFDKDHRADEAESLWNMILHTQTRS--ISKRLFSRMIS 203 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p---~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~tyn~lI~ 203 (284)
..|...++.|+.+.+..+++. .+..+ |..-++.|. . +..|+.+-+..++ +.|..+ .+..-++. +.
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~-~-~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~ 73 (156)
T 1bd8_A 4 DRLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQ-V-MMFGSTAIALELL----KQGASPNVQDTSGTSP-VH 73 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHH-H-SCTTCHHHHHHHH----HTTCCTTCCCTTSCCH-HH
T ss_pred hHHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHH-H-HHcCCHHHHHHHH----HCCCCCCCcCCCCCCH-HH
Confidence 345567788998888887776 22233 333344444 4 7778877655444 455442 12222333 44
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDED--TVRRIASAFQRVGQDDKQKLVLKK 255 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~--ty~~ll~a~~~~G~~d~a~~l~~~ 255 (284)
..+..|+.+-+ +.+.+.|..++.. .-.+.|...+..|+.+.+..+++.
T Consensus 74 ~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 74 DAARTGFLDTL----KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp HHHHTTCHHHH----HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHcCcHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence 44566776544 3444567555432 122344555578888766666544
No 320
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=21.23 E-value=79 Score=24.85 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 023326 174 RADEAESLWNMILHTQTRSISKRLFSRMISLYDHHDMPNKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 174 ~~~~A~~l~~~m~~~~~~~~~~~tyn~lI~~~~~~G~~~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~ 253 (284)
++....++.+.|..... +..-.-.+|.|+.+.|++|+|.+++.++... +..... ..+.++..-|--++
T Consensus 14 ~l~~~~~~~~~LR~qrH---df~NkLqvI~GLlql~~ydea~~yI~~~~~~--------~q~~~~-~~~i~~P~la~lLl 81 (192)
T 1ixm_A 14 DTALTNELIHLLGHSRH---DWMNKLQLIKGNLSLQKYDRVFEMIEEMVID--------AKHESK-LSNLKTPHLAFDFL 81 (192)
T ss_dssp CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHHHH-HHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHHHH-HHhCCCHHHHHHHH
Confidence 34445555555543211 2222457899999999999999999987543 222222 55677776666666
Q ss_pred HHhH
Q 023326 254 KKYL 257 (284)
Q Consensus 254 ~~m~ 257 (284)
.++.
T Consensus 82 ~K~~ 85 (192)
T 1ixm_A 82 TFNW 85 (192)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 5543
No 321
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.12 E-value=81 Score=19.69 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=17.8
Q ss_pred CCChhHHHHHHHHHHHCC-CCCCH
Q 023326 208 HDMPNKIIEVFADMEELG-VRPDE 230 (284)
Q Consensus 208 ~G~~~~A~~l~~~M~~~g-~~Pd~ 230 (284)
.-|++.|+..|.+++..| |.|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 559999999999998877 44443
No 322
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=20.95 E-value=1.2e+02 Score=23.97 Aligned_cols=113 Identities=13% Similarity=-0.007 Sum_probs=56.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--CHHHHHHHHH
Q 023326 129 KALRILRKRGQWLRVIQVAKWMLSKGQGATMG---TYDTLLLAFDKDHRADEAESLWNMILHTQTRSI--SKRLFSRMIS 203 (284)
Q Consensus 129 ~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~~--~~~tyn~lI~ 203 (284)
..|...++.|+++. ++.+.+.|..++.. .-.+.|..-+..|+.+-. +.+++.|..+. +..-+ +.+.
T Consensus 7 ~~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~-t~L~ 77 (285)
T 1wdy_A 7 HLLIKAVQNEDVDL----VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV----ELLLRHGADPVLRKKNGA-TPFL 77 (285)
T ss_dssp HHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTCC-CHHH
T ss_pred hHHHHHHHcCCHHH----HHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCCcccCCCCC-CHHH
Confidence 34555677787654 45555666555432 112344455566776544 44445554421 11112 2333
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDT--VRRIASAFQRVGQDDKQKLVLK 254 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t--y~~ll~a~~~~G~~d~a~~l~~ 254 (284)
..+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+....+++
T Consensus 78 ~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 126 (285)
T 1wdy_A 78 LAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126 (285)
T ss_dssp HHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHH
Confidence 445566654 4444455665554321 1234445567778765555544
No 323
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Probab=20.75 E-value=5.9e+02 Score=26.21 Aligned_cols=64 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCH----------------------HHHHHHHHHHHhCCChhHHHHHH
Q 023326 162 YDTLLLAFDKDH-RADEAESLWNMILHTQTRSISK----------------------RLFSRMISLYDHHDMPNKIIEVF 218 (284)
Q Consensus 162 y~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~----------------------~tyn~lI~~~~~~G~~~~A~~l~ 218 (284)
....+.++.+.| .-+.|.++|+.|.....-..|. ..|.++++.. .|+.++...++
T Consensus 781 r~~F~~g~~~~G~~~~~a~~ifd~i~~Fa~YgFnKSHAaAYa~laYqtAyLK~hyP~eF~aAlLt~~--~~~~~k~~~~i 858 (1220)
T 2hpi_A 781 RERFVRGAKERGVPEEEANRLFDMLEAFANYGFNKSHAAAYSLLSYQTAYVKAHYPVEFMAALLSVE--RHDSDKVAEYI 858 (1220)
T ss_dssp HHHHHHHHHHHSCCSHHHHHHHHHHHHHTTSCBCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHhCHHHHHHHHhHhh--cCCchHHHHHH
Confidence 345566776666 3455777887775443221121 1134444443 67788888888
Q ss_pred HHHHHCCCC
Q 023326 219 ADMEELGVR 227 (284)
Q Consensus 219 ~~M~~~g~~ 227 (284)
.+++..|+.
T Consensus 859 ~ear~~Gi~ 867 (1220)
T 2hpi_A 859 RDARALGIP 867 (1220)
T ss_dssp HHHHTTTCC
T ss_pred HHHHHCCCe
Confidence 888888764
No 324
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=20.44 E-value=94 Score=23.02 Aligned_cols=46 Identities=11% Similarity=-0.031 Sum_probs=20.1
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHH
Q 023326 204 LYDHHDMPNKIIEVFADMEELGVRPDEDT--VRRIASAFQRVGQDDKQKLVL 253 (284)
Q Consensus 204 ~~~~~G~~~~A~~l~~~M~~~g~~Pd~~t--y~~ll~a~~~~G~~d~a~~l~ 253 (284)
..+..|+.+- ++.+.+.|..++... -.+.|...+..|+.+.+..++
T Consensus 78 ~A~~~~~~~~----v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll 125 (179)
T 3f6q_A 78 LAASHGHRDI----VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV 125 (179)
T ss_dssp HHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHH----HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3345555443 333344454443321 123344444566665444444
No 325
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=20.34 E-value=1.3e+02 Score=21.70 Aligned_cols=116 Identities=15% Similarity=0.077 Sum_probs=59.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHH
Q 023326 131 LRILRKRGQWLRVIQVAKWMLSKGQGATMGTY--DTLLLAFDKDHRADEAESLWNMILHTQTRS--ISKRLFSRMISLYD 206 (284)
Q Consensus 131 i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty--~~Ll~~~~~~g~~~~A~~l~~~m~~~~~~~--~~~~tyn~lI~~~~ 206 (284)
|..-+..|+. ++++.+.+.|..++.... .+.+...+..|..+-+..++ +.|..+ .+..-++. +...+
T Consensus 40 L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~ 110 (167)
T 3v31_A 40 LMWAAAHGQI----AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL----DCGVDVNEYDWNGGTP-LLYAV 110 (167)
T ss_dssp HHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCCCTTSCCH-HHHHH
T ss_pred HHHHHHCCCH----HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH----HCCCCCCcCCCCCCCH-HHHHH
Confidence 3334556664 445556666766553211 12334445567766544444 444432 12222233 33445
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHhHHh
Q 023326 207 HHDMPNKIIEVFADMEELGVRPDEDT--VRRIASAFQRVGQDDKQKLVLKKYLSK 259 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g~~Pd~~t--y~~ll~a~~~~G~~d~a~~l~~~m~~~ 259 (284)
..|+.+-+. .+.+.|..|+... -.+.+...+..|+.+.+..+++...+.
T Consensus 111 ~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 111 HGNHVKCVK----MLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 567765443 3444665554332 224455666788888777777766554
No 326
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=20.29 E-value=3.9e+02 Score=22.50 Aligned_cols=125 Identities=10% Similarity=0.098 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCCHH-----HH
Q 023326 126 AAAKALRILRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKD--HRADEAESLWNMILHTQTRSISKR-----LF 198 (284)
Q Consensus 126 ~y~~~i~~~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~--g~~~~A~~l~~~m~~~~~~~~~~~-----ty 198 (284)
.|..+|.++...-.-.+|..+++.|...| .|..++.-+| +.. .++....+.|..+....+.. ++. .|
T Consensus 73 ~f~~ll~~l~~~~~~~dA~~L~~A~kg~G--tde~~lieIL---~tRs~~ql~~i~~~Y~~~yg~~Le~-dI~~e~sG~~ 146 (315)
T 1dm5_A 73 NYEAAALALLRKPDEFLAEQLHAAMKGLG--TDKNALIDIL---CTQSNAQIHAIKAAFKLLYKEDLEK-EIISETSGNF 146 (315)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHSSS--CCHHHHHHHH---SSCCHHHHHHHHHHHHHHHSSCHHH-HHHHHCCHHH
T ss_pred cHHHHHHHHccChhHHHHHHHHHHhhcCC--CchhhhhhhH---hcCCHHHHHHHHHHHHHHhCccHHH-HHHhccCchH
Confidence 46666777776555678888888886544 5766555544 332 23444455555543322221 111 14
Q ss_pred HHHHHHHHhCCCh-----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhcC
Q 023326 199 SRMISLYDHHDMP-----------NKIIEVFADMEELGVRPDEDTVRRIASAFQRVGQDDKQKLVLKKYLSKWK 261 (284)
Q Consensus 199 n~lI~~~~~~G~~-----------~~A~~l~~~M~~~g~~Pd~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~~ 261 (284)
--++-+.++..+. .+|..+++.|+. +...|..++..+|. . ........+++...+.|+
T Consensus 147 ~~~L~~lv~~~r~~~~~vd~~~a~~dA~~L~~A~~~-~~GTde~~lirIl~---~-Rs~~~L~~i~~~Y~~~~g 215 (315)
T 1dm5_A 147 QRLLVSMLQGGRKEDEPVNAAHAAEDAAAIYQAGEG-QIGTDESRFNAVLA---T-RSYPQLHQIFHEYSKISN 215 (315)
T ss_dssp HHHHHHHHTTCCCTTCCCCHHHHHHHHHHHHHHTTT-SSSCCHHHHHHHHH---H-SCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHhhC-cCCCcHHHHHHHHH---h-CCHHHHHHHHHHHHHHhC
Confidence 4455555554432 457778877754 24568777666653 2 233446667777776665
No 327
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=20.23 E-value=81 Score=24.77 Aligned_cols=32 Identities=6% Similarity=-0.039 Sum_probs=26.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhHHhc
Q 023326 229 DEDTVRRIASAFQRVGQDDKQKLVLKKYLSKW 260 (284)
Q Consensus 229 d~~ty~~ll~a~~~~G~~d~a~~l~~~m~~~~ 260 (284)
|-.-.-.+|.|+.+.|++|+|.+++.++.+.+
T Consensus 31 df~NkLqvI~GLlql~~ydea~~yI~~~~~~~ 62 (192)
T 1ixm_A 31 DWMNKLQLIKGNLSLQKYDRVFEMIEEMVIDA 62 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33345678999999999999999999887654
No 328
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=20.21 E-value=1.4e+02 Score=21.18 Aligned_cols=71 Identities=13% Similarity=0.259 Sum_probs=38.6
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCC-CCCH---HHHHHHHHHHH
Q 023326 134 LRKRGQWLRVIQVAKWMLSKGQGATMGTYDTLLLAFDKDHRADEAESLWNMILHT---QTR-SISK---RLFSRMISLYD 206 (284)
Q Consensus 134 ~~~~g~~~~A~~l~~~M~~~g~~p~~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~~-~~~~---~tyn~lI~~~~ 206 (284)
.++.|++++|.+++++-.+. +.+|..+-.+|++. |-. +.+. ..-+.|+++..
T Consensus 32 ~Ak~gdfe~A~~~l~eA~~~---------------------l~~AH~~QT~Liq~Ea~g~~~~~slLlvHAQDhLMta~~ 90 (109)
T 3k1s_A 32 FAKQGKMAEADEAMVKAKEA---------------------INEAHHFQTELIQSEARGEKTEISVLLIHAQDHLMNAIT 90 (109)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhCCCCCCCCeeehhHHHHHHHHHH
Confidence 56677777777766654332 22334444444332 211 2232 22366666666
Q ss_pred hCCChhHHHHHHHHHHHCC
Q 023326 207 HHDMPNKIIEVFADMEELG 225 (284)
Q Consensus 207 ~~G~~~~A~~l~~~M~~~g 225 (284)
-....++.+++|+++...|
T Consensus 91 ~~~la~e~I~lyk~~~~~~ 109 (109)
T 3k1s_A 91 VKELAAEFIDLYKKLEAKG 109 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 6666777777777766543
Done!