Query 023327
Match_columns 284
No_of_seqs 184 out of 1347
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 03:10:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 3.1E-48 6.6E-53 342.6 29.0 246 32-283 63-330 (365)
2 COG0631 PTC1 Serine/threonine 100.0 3.3E-45 7.2E-50 312.0 25.0 241 30-283 4-252 (262)
3 PTZ00224 protein phosphatase 2 100.0 2E-44 4.4E-49 319.3 30.1 237 30-283 18-271 (381)
4 KOG0697 Protein phosphatase 1B 100.0 2.1E-44 4.6E-49 293.5 20.6 247 31-283 19-291 (379)
5 KOG0698 Serine/threonine prote 100.0 2.3E-43 5E-48 310.2 28.6 250 33-284 38-305 (330)
6 PF00481 PP2C: Protein phospha 100.0 6.5E-44 1.4E-48 304.5 15.7 236 35-275 1-254 (254)
7 cd00143 PP2Cc Serine/threonine 100.0 7.6E-40 1.6E-44 279.1 27.9 241 35-282 2-254 (254)
8 smart00332 PP2Cc Serine/threon 100.0 4.1E-39 8.8E-44 275.0 27.9 241 32-280 4-255 (255)
9 PRK14559 putative protein seri 100.0 1.5E-39 3.3E-44 303.2 26.7 240 33-283 374-635 (645)
10 KOG0699 Serine/threonine prote 100.0 2.3E-37 4.9E-42 260.9 20.6 263 15-284 2-504 (542)
11 KOG0700 Protein phosphatase 2C 100.0 7.2E-31 1.6E-35 226.5 18.1 209 62-270 96-378 (390)
12 KOG1323 Serine/threonine phosp 99.9 2E-25 4.3E-30 187.1 18.2 222 62-283 141-487 (493)
13 KOG1379 Serine/threonine prote 99.9 9.7E-24 2.1E-28 176.7 22.4 203 48-282 90-330 (330)
14 KOG0618 Serine/threonine phosp 99.9 4.6E-22 9.9E-27 186.6 15.4 250 25-283 513-772 (1081)
15 PF13672 PP2C_2: Protein phosp 99.9 9.7E-21 2.1E-25 157.3 15.6 178 39-251 3-193 (212)
16 smart00331 PP2C_SIG Sigma fact 99.8 5.3E-18 1.1E-22 138.8 21.5 184 34-267 4-192 (193)
17 TIGR02865 spore_II_E stage II 99.7 1.2E-16 2.6E-21 154.5 20.7 202 32-282 550-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.6 1.2E-13 2.6E-18 112.8 18.3 173 63-283 2-193 (193)
19 COG2208 RsbU Serine phosphatas 98.7 4.2E-06 9.1E-11 75.3 21.4 200 32-284 147-367 (367)
20 PRK10693 response regulator of 82.7 18 0.00039 31.5 10.5 100 49-159 150-259 (303)
21 PF09436 DUF2016: Domain of un 65.0 4.2 9.2E-05 27.2 1.4 23 223-245 24-46 (72)
22 COG2168 DsrH Uncharacterized c 46.8 9.8 0.00021 27.0 0.9 48 226-276 25-72 (96)
23 PF06972 DUF1296: Protein of u 37.1 46 0.00099 21.3 2.7 26 239-264 18-44 (60)
24 COG3700 AphA Acid phosphatase 34.8 76 0.0017 25.5 4.2 45 226-270 71-130 (237)
25 KOG0641 WD40 repeat protein [G 31.6 2.7E+02 0.0059 23.4 7.1 40 129-168 232-274 (350)
26 COG0796 MurI Glutamate racemas 24.3 1.2E+02 0.0026 26.1 4.1 54 67-120 7-67 (269)
27 COG5518 Bacteriophage capsid p 23.4 59 0.0013 29.2 2.1 136 136-283 190-330 (492)
28 TIGR03735 PRTRC_A PRTRC system 23.4 49 0.0011 26.9 1.5 47 223-269 23-90 (192)
29 PF01436 NHL: NHL repeat; Int 23.1 1.3E+02 0.0028 15.7 3.8 19 136-154 10-28 (28)
30 cd06409 PB1_MUG70 The MUG70 pr 22.2 1.2E+02 0.0025 21.2 3.0 20 216-235 43-62 (86)
31 PRK02391 heat shock protein Ht 22.2 85 0.0018 27.4 2.8 26 226-251 114-139 (296)
32 PRK03982 heat shock protein Ht 20.9 1.1E+02 0.0025 26.4 3.4 25 227-251 107-131 (288)
33 KOG0404 Thioredoxin reductase 20.6 1.9E+02 0.0041 24.4 4.3 68 3-73 69-150 (322)
34 PRK05457 heat shock protein Ht 20.3 1.2E+02 0.0026 26.3 3.4 36 215-251 105-140 (284)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=3.1e-48 Score=342.64 Aligned_cols=246 Identities=35% Similarity=0.565 Sum_probs=207.6
Q ss_pred CceeeeEEeecCCCCCCCCceEEeecccC--------CCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcccHHH
Q 023327 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQE--------KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTES 103 (284)
Q Consensus 32 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~--------~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~ 103 (284)
+.++++.+|++|.|+ .|||++++..... ...+..+|+|||||||+.+++++++.+.+.+.+.......+.+
T Consensus 63 ~~~~~~~~s~~G~R~-~nED~~~~~~~~~~~~~~~~~~~~~~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~ 141 (365)
T PLN03145 63 PVVRSGAWADIGSRS-SMEDVYICVDNFMSDFGLKNSEDGPSAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEK 141 (365)
T ss_pred CceEEEEEccccCCC-CCCCceEecccccccccccccCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 447899999999866 9999987643211 1234689999999999999999999999988876555556788
Q ss_pred HHHHHHHHHHHHHHHHhcc-cCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHHcCC
Q 023327 104 AIRRAYHMTDTKILEQAFV-LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGG 180 (284)
Q Consensus 104 ~l~~~~~~~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~~gg 180 (284)
+|.++|.+++..+.+.... ....+|||++++++.++++|++|+||||+|+++++++++||.||++.+ |+.|+.+.||
T Consensus 142 al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg 221 (365)
T PLN03145 142 VVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGG 221 (365)
T ss_pred HHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCC
Confidence 8999999999998764322 224589999999999999999999999999999999999999999987 7889999999
Q ss_pred eeecCCCCCCccCCcchhccccCCcCCCC-------CccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHH---
Q 023327 181 FVSNIPGDVPRVDGQLAVARAFGDKSLKI-------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIK--- 250 (284)
Q Consensus 181 ~~~~~~~~~~~~~~~~~ltr~lG~~~~~~-------~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~--- 250 (284)
.+.. .+.++.+.+||+||+..+|. .+.++|++..+.+.++++|||||||||||+++++++.++++
T Consensus 222 ~v~~-----g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l 296 (365)
T PLN03145 222 YVYD-----GYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRL 296 (365)
T ss_pred ceec-----ceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHH
Confidence 8763 25567778999999977652 36789999999999877788999999999999999866553
Q ss_pred -ccCCHHHHHHHHHHHHHhcCCCCCceEEEEEec
Q 023327 251 -HVKDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 251 -~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~i~ 283 (284)
+..+|+++|+.|+++|+++++.||+|||||+|.
T Consensus 297 ~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~ 330 (365)
T PLN03145 297 QEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQ 330 (365)
T ss_pred hcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEee
Confidence 346899999999999999999999999999986
No 2
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-45 Score=311.98 Aligned_cols=241 Identities=28% Similarity=0.366 Sum_probs=199.6
Q ss_pred CCCceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCC----CCccc--HHH
Q 023327 30 MSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEP----DFWTD--TES 103 (284)
Q Consensus 30 ~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~----~~~~~--~~~ 103 (284)
....+.++..++.|..++.|||++++........ ..+|+|||||||+++++++++.+++.+.+.. ..... ..+
T Consensus 4 ~~~~~~~~~~s~~g~~R~~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~ 82 (262)
T COG0631 4 GILSLKVAGLSDVGTVRKHNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEE 82 (262)
T ss_pred ccceeeeeeeccCCCccCCCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHH
Confidence 3456788999999999989999999765433333 6799999999999999999988877775532 11112 578
Q ss_pred HHHHHHHHHHHHHHHHhc--ccCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCe
Q 023327 104 AIRRAYHMTDTKILEQAF--VLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGF 181 (284)
Q Consensus 104 ~l~~~~~~~~~~l~~~~~--~~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~e~~ri~~~gg~ 181 (284)
.|.+.+..++..+..... ....++|||++++++.+++++++||||||+|+++++++.+||.||++.++.. ..+..
T Consensus 83 ~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~---~~~~~ 159 (262)
T COG0631 83 LLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLE---QRGII 159 (262)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCCceEEeccCCcHHHHHH---HhcCC
Confidence 999999999999988764 2347899999999999999999999999999999999999999999988422 22111
Q ss_pred eecCCCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCCHHHHHHH
Q 023327 182 VSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKH 261 (284)
Q Consensus 182 ~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~ 261 (284)
...... ..+..+.+||+||+.. ...|++....+.+ ++++|||||||||.++++++.++++...+|+.+++.
T Consensus 160 ~~~~~~---~~~~~~~ltralG~~~-----~~~p~~~~~~~~~-~d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~ 230 (262)
T COG0631 160 TPEEAR---SHPRRNALTRALGDFD-----LLEPDITELELEP-GDFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADK 230 (262)
T ss_pred CHHHHH---hCccchhhhhhcCCCc-----ccceeEEEEEcCC-CCEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHH
Confidence 111111 2234458999999998 5899999999999 699999999999999999999999987899999999
Q ss_pred HHHHHHhcCCCCCceEEEEEec
Q 023327 262 LIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 262 L~~~a~~~~~~DNiTvivv~i~ 283 (284)
|++.|+.+++.||+|++++.+.
T Consensus 231 li~~a~~~g~~DNiT~ilv~~~ 252 (262)
T COG0631 231 LIELALEGGGPDNITVVLVRLN 252 (262)
T ss_pred HHHHHHhcCCCCceEEEEEEee
Confidence 9999999999999999999875
No 3
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=2e-44 Score=319.30 Aligned_cols=237 Identities=33% Similarity=0.549 Sum_probs=195.7
Q ss_pred CCCceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHH
Q 023327 30 MSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAY 109 (284)
Q Consensus 30 ~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (284)
....+.+|+.+++|.|+ .|||++++.. .++..+|+|||||||..+|.++++.+.+.+.+.... ...+.|++++
T Consensus 18 ~~~~~~~g~~s~~G~R~-~nED~~~v~~----~~~~~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~~--~~~~~l~~a~ 90 (381)
T PTZ00224 18 GNSIFRCASACVNGYRE-SMEDAHLLYL----TDDWGFFGVFDGHVNDECSQYLARAWPQALEKEPEP--MTDERMEELC 90 (381)
T ss_pred CCccEEEEEEeCCCCCC-CCCCeeEecc----CCCceEEEEEeCCCcHHHHHHHHHHHHHHHHhcccc--ccHHHHHHHH
Confidence 45679999999999977 8999987532 234579999999999999999999988766543221 1245588999
Q ss_pred HHHHHHHHHHhcccCCCCcceEEEEEE-eCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHHcCCeeecCC
Q 023327 110 HMTDTKILEQAFVLGKGGSTAVTAILI-NGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSNIP 186 (284)
Q Consensus 110 ~~~~~~l~~~~~~~~~~~~tt~~~~~~-~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~~ 186 (284)
..+++.+.+... . +|||++++++ .+.+++++|+||||+|++++|++.+||.||++.+ |+.|+...||.+..
T Consensus 91 ~~~d~~i~~~~~---~-~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~-- 164 (381)
T PTZ00224 91 LEIDEEWMDSGR---E-GGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVS-- 164 (381)
T ss_pred HHHHHHHHhccc---C-CCCeEEEEEEEECCEEEEEEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEecc--
Confidence 999999885432 2 3455555444 5689999999999999999999999999999987 78889999988763
Q ss_pred CCCCccCCcchhccccCCcCCCC---------CccCCCceEEEEeCCCCeEEEEEcCCCcC-CCCHHHHHHHHHc----c
Q 023327 187 GDVPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWK-VMTNQEAVDCIKH----V 252 (284)
Q Consensus 187 ~~~~~~~~~~~ltr~lG~~~~~~---------~v~~~p~~~~~~l~~~~d~llL~SDGl~d-~l~~~~i~~~~~~----~ 252 (284)
.+..+.+.+||+||+..+|. .+.+.|++..+.+.+ +|+|||||||||| .++++++.+++.+ .
T Consensus 165 ---~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~-~D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~ 240 (381)
T PTZ00224 165 ---NRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQS-NDFIILACDGVFEGNFSNEEVVAFVKEQLETC 240 (381)
T ss_pred ---ccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCC-CCEEEEECCCcCcCccCHHHHHHHHHHHHhcC
Confidence 35677789999999976542 356789999999987 7899999999999 7999999999863 3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCceEEEEEec
Q 023327 253 KDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 253 ~~~~~~a~~L~~~a~~~~~~DNiTvivv~i~ 283 (284)
.+++.+|+.|++.|+.+|+.||+|||||++.
T Consensus 241 ~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~ 271 (381)
T PTZ00224 241 DDLAVVAGRVCDEAIRRGSKDNISCLIVQLK 271 (381)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence 6899999999999999999999999999985
No 4
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-44 Score=293.54 Aligned_cols=247 Identities=31% Similarity=0.516 Sum_probs=217.9
Q ss_pred CCceeeeEEeecCCCCCCCCceEEeecccC-CCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCc--------ccH
Q 023327 31 SKHITHGYHLVKGKSNHAMEDYLVSEFKQE-KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW--------TDT 101 (284)
Q Consensus 31 ~~~~~~~~~s~~G~~~~~neD~~~~~~~~~-~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~--------~~~ 101 (284)
-+.++||.+|++|||- ++||++.+..... .-++|.+|+|||||.|++.|.+++..+++.+.+..++. ++.
T Consensus 19 GNglryg~SSMQGWR~-eMEDah~A~~~l~~~l~dWSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~ 97 (379)
T KOG0697|consen 19 GNGLRYGVSSMQGWRV-EMEDAHTAVAGLPSPLEDWSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENV 97 (379)
T ss_pred CCceeeeeccccchhh-hhhhhhhhhhcCCCCccCceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHH
Confidence 3789999999999999 9999998654332 45889999999999999999999999999988754433 367
Q ss_pred HHHHHHHHHHHHHHHHHHhccc--CCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHH
Q 023327 102 ESAIRRAYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIES 177 (284)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~ 177 (284)
+.-|+..|.++++......... ...+|+|++++++...++|++|+||||++++|+|+...-|+||.|.. |++||..
T Consensus 98 ~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqn 177 (379)
T KOG0697|consen 98 EKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQN 177 (379)
T ss_pred HhhHhhcceeHHHHHhhhhhhhcccccCCceEEEEEecCceEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhc
Confidence 7889999999988776654332 23588899999999999999999999999999999999999999987 9999999
Q ss_pred cCCeeecCCCCCCccCCcchhccccCCcCCCC---------CccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHH
Q 023327 178 RGGFVSNIPGDVPRVDGQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDC 248 (284)
Q Consensus 178 ~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~---------~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~ 248 (284)
+||.+-. .+.++.+.++|+|||..||. .|+++|++........++||||++||+||.++++|+.++
T Consensus 178 AGGSVMI-----qRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcef 252 (379)
T KOG0697|consen 178 AGGSVMI-----QRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEF 252 (379)
T ss_pred CCCeEEE-----EEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHH
Confidence 9997764 38899999999999999874 489999999999998899999999999999999999999
Q ss_pred HHcc----CCHHHHHHHHHHHHHhcCCCCCceEEEEEec
Q 023327 249 IKHV----KDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 249 ~~~~----~~~~~~a~~L~~~a~~~~~~DNiTvivv~i~ 283 (284)
+++. .+...++..+++.++-+|++||+|+|++-|.
T Consensus 253 v~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlvcfp 291 (379)
T KOG0697|consen 253 VKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLVCFP 291 (379)
T ss_pred HHhhheecccHHHHHHHHHHHHHhccCccCceEEEEecC
Confidence 9774 5899999999999999999999999999874
No 5
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-43 Score=310.17 Aligned_cols=250 Identities=46% Similarity=0.672 Sum_probs=214.2
Q ss_pred cee-eeEEeecCCCCCCCCceEEeeccc----CCCC-ceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcc---cHHH
Q 023327 33 HIT-HGYHLVKGKSNHAMEDYLVSEFKQ----EKDN-ELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT---DTES 103 (284)
Q Consensus 33 ~~~-~~~~s~~G~~~~~neD~~~~~~~~----~~~~-~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~---~~~~ 103 (284)
.+. .+..+.+|+++ .+||++...... ..+. ...+|||||||||..+|+++.+.+...+.+...... ....
T Consensus 38 ~~~~~~~~~~~~~r~-~med~~~~~~~~~~~~~~~~~~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~ 116 (330)
T KOG0698|consen 38 SYRLGSLLSIRGRRR-KMEDRHVQLPDFLEEDVGGEQDTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKD 116 (330)
T ss_pred cccceEEEecCCCCC-ccCcceeecccccccccCCCCceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Confidence 344 44457777777 899999865442 2233 589999999999999999999999999998776665 3789
Q ss_pred HHHHHHH-HHHHHHHHHhcccCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCC-eeeeCCCCCCCch--HHHHHHHcC
Q 023327 104 AIRRAYH-MTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNG-VAKQLSVDHEPSK--EKRLIESRG 179 (284)
Q Consensus 104 ~l~~~~~-~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~-~~~~lt~dh~~~~--e~~ri~~~g 179 (284)
+++++|. +++..+..........|+|++++++..+.++|++|+||||+++++.+ ...+||.||.|.. |+.||...|
T Consensus 117 a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~G 196 (330)
T KOG0698|consen 117 ALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAG 196 (330)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcC
Confidence 9999999 69999987622223556666666666566999999999999999865 8999999999965 999999999
Q ss_pred CeeecCCCCCCccCCcchhccccCCcCCC-CCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc----cCC
Q 023327 180 GFVSNIPGDVPRVDGQLAVARAFGDKSLK-IHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH----VKD 254 (284)
Q Consensus 180 g~~~~~~~~~~~~~~~~~ltr~lG~~~~~-~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~----~~~ 254 (284)
|.+....+ .++.++.+.++|+|||..+| +++.++|++....+...++||||+||||||.++++|+.++++. ..+
T Consensus 197 G~v~~~~~-~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~ 275 (330)
T KOG0698|consen 197 GRVSNWGG-VWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISS 275 (330)
T ss_pred CEEEEcCC-cceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhcccc
Confidence 99997655 56899999999999999999 8999999999999998889999999999999999999999988 458
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEecC
Q 023327 255 AKSAAKHLIEHAVSRKSKDDISCIVVKFHR 284 (284)
Q Consensus 255 ~~~~a~~L~~~a~~~~~~DNiTvivv~i~~ 284 (284)
+..++..|...|..+++.||+|||||.|..
T Consensus 276 ~~~a~~~l~~~a~~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 276 PLAAAKLLATEALSRGSKDNITVVVVRLKS 305 (330)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEEecC
Confidence 999999999999999999999999999863
No 6
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=6.5e-44 Score=304.55 Aligned_cols=236 Identities=39% Similarity=0.604 Sum_probs=194.2
Q ss_pred eeeEEeecCCCCCCCCceEEeecccC---CCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcc--cHHHHHHHHH
Q 023327 35 THGYHLVKGKSNHAMEDYLVSEFKQE---KDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWT--DTESAIRRAY 109 (284)
Q Consensus 35 ~~~~~s~~G~~~~~neD~~~~~~~~~---~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 109 (284)
.+|+.+..|.|. .|||++++..... ...+..+|+|||||||..++.+++..+...+.+...... ++.++|..+|
T Consensus 1 ~~~~~~~~g~r~-~~eD~~~~~~~~~~~~~~~~~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~ 79 (254)
T PF00481_consen 1 DYGVSSMQGVRK-EMEDRHLIIQNFNSNSGNDNVSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAF 79 (254)
T ss_dssp EEEEEEEECTSS-SHHEEEEEEEEETCCTTEEEEEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcCeecCCCCCC-cccCEEEEecCccccCCCCCcEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhccccee
Confidence 478899999999 8999999766442 457889999999999999999999999876655432222 5788999999
Q ss_pred HH-HHHHHHHHhcc-cCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeee-eCCCCCCCch--HHHHHHHcCCeeec
Q 023327 110 HM-TDTKILEQAFV-LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAK-QLSVDHEPSK--EKRLIESRGGFVSN 184 (284)
Q Consensus 110 ~~-~~~~l~~~~~~-~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~-~lt~dh~~~~--e~~ri~~~gg~~~~ 184 (284)
.. ++..+...... ....+|||++++++.++++|++|+||||+|+++++... +||.||++.+ |+.|+.+.||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~ 159 (254)
T PF00481_consen 80 LAFTDESLYSDSENNESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSE 159 (254)
T ss_dssp HHHHHHHHHHHHHHHTHTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEE
T ss_pred eecccccccccccccccccccccccccccccceeEEEeeeeeeeeeeeccccccccccccccchhhccceeecccccccc
Confidence 99 88888763321 33678888999999999999999999999999999888 9999999997 99999999999885
Q ss_pred CCCCCCccCCcchhccccCCcCCCC----CccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCC----HH
Q 023327 185 IPGDVPRVDGQLAVARAFGDKSLKI----HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKD----AK 256 (284)
Q Consensus 185 ~~~~~~~~~~~~~ltr~lG~~~~~~----~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~~----~~ 256 (284)
..+..+.+.+||+|||..+|+ ++.++|++..+.+.+.+.|||||||||||+++++++.+++++..+ |+
T Consensus 160 ----~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~ 235 (254)
T PF00481_consen 160 ----NGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQ 235 (254)
T ss_dssp ----TEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHH
T ss_pred ----chhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHH
Confidence 347778889999999999998 899999999999999656999999999999999999999988644 99
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 023327 257 SAAKHLIEHAVSRKSKDDI 275 (284)
Q Consensus 257 ~~a~~L~~~a~~~~~~DNi 275 (284)
.+|+.|+++|+++|+.|||
T Consensus 236 ~~a~~L~~~A~~~gs~DNi 254 (254)
T PF00481_consen 236 EAAEKLVDEAIARGSKDNI 254 (254)
T ss_dssp HHHHHHHHHHHHTTHHSHE
T ss_pred HHHHHHHHHHHhcCCCCCC
Confidence 9999999999999999996
No 7
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=7.6e-40 Score=279.06 Aligned_cols=241 Identities=43% Similarity=0.641 Sum_probs=203.4
Q ss_pred eeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCC-----cccHHHHHHHHH
Q 023327 35 THGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDF-----WTDTESAIRRAY 109 (284)
Q Consensus 35 ~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 109 (284)
.+++.+..|.|. .|||++++...... .+..+|+|||||||+..+.++++.+.+.+.+.... ...+...|+++|
T Consensus 2 ~~~~~~~~g~r~-~neD~~~~~~~~~~-~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 79 (254)
T cd00143 2 SAGVSDKGGDRK-TNEDAVVIKPNLNN-EDGGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAF 79 (254)
T ss_pred ceeeecCCCCCC-CCcceEEEeccCCC-CCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 467777788877 89999986432110 25789999999999999999999888877654432 345678899999
Q ss_pred HHHHHHHHHHhcc--cCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHHcCCeeecC
Q 023327 110 HMTDTKILEQAFV--LGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSNI 185 (284)
Q Consensus 110 ~~~~~~l~~~~~~--~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~ 185 (284)
..+++.+...... ....++||++++++.+++++++|+||||+|++++++++++|.||++.+ +..|+...++...
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~-- 157 (254)
T cd00143 80 LRADEEILEEAQDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVS-- 157 (254)
T ss_pred HHHHHHHHHhhhhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEE--
Confidence 9999999876542 235689999999999999999999999999999999999999999986 7788888887654
Q ss_pred CCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccC---CHHHHHHHH
Q 023327 186 PGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVK---DAKSAAKHL 262 (284)
Q Consensus 186 ~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~---~~~~~a~~L 262 (284)
....+.++.+||+||...+++.+..+|++....+.+.+++|||||||||+++++++|.+++.... +++++|+.|
T Consensus 158 ---~~~~~~~~~~t~~lG~~~~~~~~~~~~~~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l 234 (254)
T cd00143 158 ---NGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQEL 234 (254)
T ss_pred ---eCEEcCceeeccccCCccccCCEEcCCeEEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHH
Confidence 12455677999999999888777889999999993348999999999999999999999998876 799999999
Q ss_pred HHHHHhcCCCCCceEEEEEe
Q 023327 263 IEHAVSRKSKDDISCIVVKF 282 (284)
Q Consensus 263 ~~~a~~~~~~DNiTvivv~i 282 (284)
++.|..+++.||+|+|++++
T Consensus 235 ~~~a~~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 235 VDLALRRGSHDNITVVVVRL 254 (254)
T ss_pred HHHHHhCCCCCCEEEEEEeC
Confidence 99999999999999999975
No 8
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=100.00 E-value=4.1e-39 Score=275.00 Aligned_cols=241 Identities=44% Similarity=0.650 Sum_probs=204.2
Q ss_pred CceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCc----ccHHHHHHH
Q 023327 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFW----TDTESAIRR 107 (284)
Q Consensus 32 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~----~~~~~~l~~ 107 (284)
..+.+++.+..|.|. .|||++++... ...+..+++|||||||..+++++++.+.+.+....... ..+.+.|++
T Consensus 4 ~~~~~~~~~~~~~r~-~neD~~~~~~~--~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (255)
T smart00332 4 LGLRYGLSSMQGVRK-PMEDAHVITPD--LSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRK 80 (255)
T ss_pred CceeEEEecCCCCCC-CCcceEEEecc--CCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHH
Confidence 457778877667666 99999986432 12567899999999999999999999998887654332 247888999
Q ss_pred HHHHHHHHHHHHhccc--CCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHHcCCeee
Q 023327 108 AYHMTDTKILEQAFVL--GKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVS 183 (284)
Q Consensus 108 ~~~~~~~~l~~~~~~~--~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~~gg~~~ 183 (284)
++..+++.+....... ...++||++++++..++++++|+||||+|+++++++.++|.||++.+ |..|+...++.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~ 160 (255)
T smart00332 81 AFLKTDEEILEELESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVI 160 (255)
T ss_pred HHHHHHHHHHHhhhhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEE
Confidence 9999999998765443 25689999999999999999999999999999999999999999976 7788888888665
Q ss_pred cCCCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccC---CHHHHHH
Q 023327 184 NIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVK---DAKSAAK 260 (284)
Q Consensus 184 ~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~---~~~~~a~ 260 (284)
.. +.+..+.+||++|...+++.+...|++....+.+.+++|||||||||++++++++.+++.+.. ++.++++
T Consensus 161 ~~-----~~~~~~~lt~~~g~~~~~~~i~~~p~~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~ 235 (255)
T smart00332 161 NG-----RVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAK 235 (255)
T ss_pred CC-----eECCeEecccccCCHhhcCCeEeeeEEEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 31 445567999999999988888899999999973338999999999999999999999998865 5999999
Q ss_pred HHHHHHHhcCCCCCceEEEE
Q 023327 261 HLIEHAVSRKSKDDISCIVV 280 (284)
Q Consensus 261 ~L~~~a~~~~~~DNiTvivv 280 (284)
.|++.|..++..||+|+|++
T Consensus 236 ~l~~~a~~~~~~Dn~T~ivv 255 (255)
T smart00332 236 RLIDLALARGSKDNITVIVV 255 (255)
T ss_pred HHHHHHHHcCCCCCeEEEEC
Confidence 99999999999999999985
No 9
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=100.00 E-value=1.5e-39 Score=303.23 Aligned_cols=240 Identities=21% Similarity=0.302 Sum_probs=181.5
Q ss_pred ceeeeEEeecCCCCCCCCceEEeeccc-----CCC---CceEEEEEEcCCCchHHHHHHHHHHHHHHH----cCCCCccc
Q 023327 33 HITHGYHLVKGKSNHAMEDYLVSEFKQ-----EKD---NELGLFAIFDGHLGHDVANYLQTHLFDNIL----KEPDFWTD 100 (284)
Q Consensus 33 ~~~~~~~s~~G~~~~~neD~~~~~~~~-----~~~---~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~----~~~~~~~~ 100 (284)
.++++..|++|.+|+.|||++.+.... ..+ ....+|+|||||||+..++.|++.+++.+. +.......
T Consensus 374 ~l~~a~~Td~G~~R~~NEDa~~i~~~~~~~~~~~~~~~~~~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~ 453 (645)
T PRK14559 374 SLEDAGRTDVGRQRHHNEDYFGINTRIQKLENPHGRIVQARGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELP 453 (645)
T ss_pred eEEEEEECCCCCCCcccCCcccccccccccccccccccccceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhccccc
Confidence 588999999999777999998753211 011 235799999999998766665555444432 22111112
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc----CCCCcceEEEEEEeCcEEEEEEeCCceEEEE-eCCeeeeCCCCCCCchHHHHH
Q 023327 101 TESAIRRAYHMTDTKILEQAFVL----GKGGSTAVTAILINGQKLVVANVGDSRAVIS-KNGVAKQLSVDHEPSKEKRLI 175 (284)
Q Consensus 101 ~~~~l~~~~~~~~~~l~~~~~~~----~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~-~~~~~~~lt~dh~~~~e~~ri 175 (284)
..+.|+++|..+|..+.+..... ...+|||++++++.+++++++||||||+|++ ++|++.+||.||++.++ +
T Consensus 454 ~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~---l 530 (645)
T PRK14559 454 DEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQR---E 530 (645)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCCeEEEeCCCCCHHHH---H
Confidence 36779999999999998754322 2468999999999999999999999999998 47899999999998864 2
Q ss_pred HHcCCeeecCCCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCC--CCH---HHHHHHHH
Q 023327 176 ESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKV--MTN---QEAVDCIK 250 (284)
Q Consensus 176 ~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~--l~~---~~i~~~~~ 250 (284)
.+.| ... ......++++.+||+||+...+ ..+|++..+.+.+ +++||||||||||+ +.. +++..++.
T Consensus 531 v~~G-i~~---~~a~~~p~~~~LTrALG~~~~~---~l~Pdi~~~~L~~-gD~lLLCSDGL~D~~~ve~~~~~~l~~il~ 602 (645)
T PRK14559 531 IQRG-VEP---QIAYARPDAYQLTQALGPRDNS---AIQPDIQFLEIEE-DTLLLLCSDGLSDNDLLETHWQTHLLPLLS 602 (645)
T ss_pred HHhC-CCH---HHHhcCcccceeeeccCCCCCC---cccceEEEEEcCC-CCEEEEECCCCCCCcccchHHHHHHHHHHh
Confidence 3334 211 1112235677999999986522 3589999999987 89999999999994 554 44566777
Q ss_pred ccCCHHHHHHHHHHHHHhcCCCCCceEEEEEec
Q 023327 251 HVKDAKSAAKHLIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 251 ~~~~~~~~a~~L~~~a~~~~~~DNiTvivv~i~ 283 (284)
...++.++++.|++.|+.+|+.||+|+|+|+++
T Consensus 603 ~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~ 635 (645)
T PRK14559 603 SSANLDQGLNKLIDLANQYNGHDNITAILVRLK 635 (645)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence 767899999999999999999999999999986
No 10
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-37 Score=260.92 Aligned_cols=263 Identities=32% Similarity=0.505 Sum_probs=218.8
Q ss_pred cccccCCCCCCCCccCC-CceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHc
Q 023327 15 GFCTSALDTGKGKSKMS-KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILK 93 (284)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~ 93 (284)
++|.+.|.+.+...... +-+.||+.+++|||. .+||++-+...+ +.++.+|+|.|||||.++|.+++..+...+.+
T Consensus 2 GAYLs~P~t~K~s~dg~g~lL~yg~s~MQGWRv-sqEDAHNci~~l--d~~t~mF~VYDGHGG~EVa~yca~kLPdflK~ 78 (542)
T KOG0699|consen 2 GAYLSKPITEKESEDGSGNLLSYGCSTMQGWRV-SQEDAHNCIVDL--DTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKE 78 (542)
T ss_pred cccccCCccccccccccCccchhchhhhhcccc-chhhhhcccccc--cCcceEEEEecCCCcHHHHHHHHHhhhHHHHh
Confidence 35666677666554433 458999999999999 899999876653 57789999999999999999999999887765
Q ss_pred CCCCcc-cHHHHHHHHHHHHHHHHHHHh----------------------------------------------------
Q 023327 94 EPDFWT-DTESAIRRAYHMTDTKILEQA---------------------------------------------------- 120 (284)
Q Consensus 94 ~~~~~~-~~~~~l~~~~~~~~~~l~~~~---------------------------------------------------- 120 (284)
...+.. ++..+|+.+|...+..|....
T Consensus 79 ~k~yk~g~~~~aL~~AFl~fD~~l~~ee~~keLk~iag~~~~k~~~aeaDd~deed~a~l~EEa~~pl~ElL~rY~G~~~ 158 (542)
T KOG0699|consen 79 RKFYKAGDVAEALQKAFLDFDDFLRAEESMKELKDIAGEGKPKKAGAEADDEDEEDRADLIEEASVPLAELLKRYGGAGV 158 (542)
T ss_pred HHhhhcccHHHHHHHHHhchhhhhcCHHHHHHHHHHcCCCCcccccccccccchHHHHHHHHhccCcHHHHHHHhcCCCc
Confidence 543332 456667777765555442211
Q ss_pred --------------------------------------------------------------------------------
Q 023327 121 -------------------------------------------------------------------------------- 120 (284)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (284)
T Consensus 159 hK~~~sp~~~~g~~s~e~~~~~~~~~eA~p~dst~~~ps~~~~p~A~A~~~~~s~~d~~te~g~~k~~g~~~g~~g~~~~ 238 (542)
T KOG0699|consen 159 HKSLLSPFLAKGDVSDESEDEDEDEEEAEPQDSTEREPSENEDPMASAEVVIESAEDKETEEGSPKKKGQKRGQKGHPIQ 238 (542)
T ss_pred cccccChhhhccCCccCCCcccccccccCCCCccccCcccccCCcccceeccccccccccccCCCCCCCcccccCCCcch
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 023327 121 -------------------------------------------------------------------------------- 120 (284)
Q Consensus 121 -------------------------------------------------------------------------------- 120 (284)
T Consensus 239 S~s~Kl~q~sKsef~fE~~~sS~d~~D~a~~EEeD~~k~~d~sd~~sse~~eneed~Ded~e~e~ddEE~~e~~map~~~ 318 (542)
T KOG0699|consen 239 SESKKLNQSSKSEFDFETAPSSSDGVDGAATEEEDEVKSPDDSDAESSEFVENEEDDDEDAEDEQDDEEMVEGSMAPLLL 318 (542)
T ss_pred hhhhhcccccccccccccCCCcccccccccccccccccCCcccccccchhcccccccccccccccchhhhhhhccccccc
Confidence
Q ss_pred -----cccCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCch--HHHHHHHcCCeeecCCCCCCccC
Q 023327 121 -----FVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSK--EKRLIESRGGFVSNIPGDVPRVD 193 (284)
Q Consensus 121 -----~~~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~--e~~ri~~~gg~~~~~~~~~~~~~ 193 (284)
..++..+|||++++++.+++++++|.||||+++.|+|+..-+|.||.|.. |..||..+||.+.-- .+++
T Consensus 319 ~~~g~EePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlD----GRVN 394 (542)
T KOG0699|consen 319 GSGGAEEPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLD----GRVN 394 (542)
T ss_pred ccccCcCCCCCCCceEEEEEecCceEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeec----ceec
Confidence 22345689999999999999999999999999999999999999999997 888999999988742 5899
Q ss_pred CcchhccccCCcCCCC---------CccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc----cCCHHHHHH
Q 023327 194 GQLAVARAFGDKSLKI---------HLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH----VKDAKSAAK 260 (284)
Q Consensus 194 ~~~~ltr~lG~~~~~~---------~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~----~~~~~~~a~ 260 (284)
+.++++|+||+-.||. +|++-|+|....|.+.++|+|+++||||++++.+++.++++. +.....+++
T Consensus 395 GGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~ice 474 (542)
T KOG0699|consen 395 GGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICE 474 (542)
T ss_pred CccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHH
Confidence 9999999999998885 488999999999999999999999999999999999988864 457889999
Q ss_pred HHHHHHHhcC------CCCCceEEEEEecC
Q 023327 261 HLIEHAVSRK------SKDDISCIVVKFHR 284 (284)
Q Consensus 261 ~L~~~a~~~~------~~DNiTvivv~i~~ 284 (284)
.|++.++.-. ..||+|+|++.|+|
T Consensus 475 eL~D~CLAp~T~GDGTGCDNMT~ii~~Fkr 504 (542)
T KOG0699|consen 475 ELCDACLAPSTDGDGTGCDNMTVIITTFKR 504 (542)
T ss_pred HHHHhhcCCCCCCCCcCCCcceEEEEEecc
Confidence 9999999743 47999999999986
No 11
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=99.97 E-value=7.2e-31 Score=226.46 Aligned_cols=209 Identities=38% Similarity=0.541 Sum_probs=165.0
Q ss_pred CCceEEEEEEcCCCchHHHHHHHHHHHHHHHc------------CC-C---------------------CcccHHHHHHH
Q 023327 62 DNELGLFAIFDGHLGHDVANYLQTHLFDNILK------------EP-D---------------------FWTDTESAIRR 107 (284)
Q Consensus 62 ~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~------------~~-~---------------------~~~~~~~~l~~ 107 (284)
++++.++||+|||||..+++++++.+...+.. .. + ......++|.+
T Consensus 96 ~~~~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~ 175 (390)
T KOG0700|consen 96 ENGWLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSK 175 (390)
T ss_pred cCCeEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHH
Confidence 67789999999999999999999999886651 10 0 03456889999
Q ss_pred HHHHHHHHHHHHhccc------CCCCcceEEEEEEeCcEEEEEEeCCceEEEEe---CC---eeeeCCCCCCCch--HHH
Q 023327 108 AYHMTDTKILEQAFVL------GKGGSTAVTAILINGQKLVVANVGDSRAVISK---NG---VAKQLSVDHEPSK--EKR 173 (284)
Q Consensus 108 ~~~~~~~~l~~~~~~~------~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~---~~---~~~~lt~dh~~~~--e~~ 173 (284)
+|.++++.+....... -..+|+++++.++.+..+|++|+||||+++-+ ++ ...|||.||+..+ |.+
T Consensus 176 Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev~ 255 (390)
T KOG0700|consen 176 AFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEVR 255 (390)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHHH
Confidence 9999999987544222 12456666666888999999999999999854 33 5689999999887 788
Q ss_pred HHHHcCCeeec-CCCCCCccCCcchhccccCCcCCCC---------------------CccCCCceEEEEeCCCCeEEEE
Q 023327 174 LIESRGGFVSN-IPGDVPRVDGQLAVARAFGDKSLKI---------------------HLSSEPDVKVEMITDDTEFIIL 231 (284)
Q Consensus 174 ri~~~gg~~~~-~~~~~~~~~~~~~ltr~lG~~~~~~---------------------~v~~~p~~~~~~l~~~~d~llL 231 (284)
||+...-.... .-....+..|.+.+||+|||..+|. +++++|.++...|.+.+.||||
T Consensus 256 Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLIl 335 (390)
T KOG0700|consen 256 RIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLIL 335 (390)
T ss_pred HHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEEE
Confidence 88876531111 1112247888999999999988874 5889999999999999999999
Q ss_pred EcCCCcCCCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 023327 232 ASDGIWKVMTNQEAVDCIKHV----KDAKSAAKHLIEHAVSRK 270 (284)
Q Consensus 232 ~SDGl~d~l~~~~i~~~~~~~----~~~~~~a~~L~~~a~~~~ 270 (284)
+|||+|++|+++|+..++.+. ..-+.+|+.|+++|+.+.
T Consensus 336 ASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~a 378 (390)
T KOG0700|consen 336 ASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGRA 378 (390)
T ss_pred eccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhhh
Confidence 999999999999999999874 234678999999988754
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.94 E-value=2e-25 Score=187.08 Aligned_cols=222 Identities=30% Similarity=0.466 Sum_probs=166.0
Q ss_pred CCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCC-------------------------CC--c-------------ccH
Q 023327 62 DNELGLFAIFDGHLGHDVANYLQTHLFDNILKEP-------------------------DF--W-------------TDT 101 (284)
Q Consensus 62 ~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~-------------------------~~--~-------------~~~ 101 (284)
.-+..+|.+||||.|..+|-.+++.+.+.+.++. .+ . .-.
T Consensus 141 ~~~~~~~slfdghags~~avvAsrll~~hI~~ql~~vvd~i~~~~~~~~~~~g~~~~~s~~s~~~~~~~~ek~Ir~E~LV 220 (493)
T KOG1323|consen 141 RADGALFSLFDGHAGSAVAVVASRLLHRHIKEQLCEVVDTILHMDRHENLNFGKHRSESSYSMSEMSREDEKRIRHEHLV 220 (493)
T ss_pred CCcceeeeeecCCCcchHHHHHHHHHHHhhhHHHHHHHHHHhhhccccccccccccccCCcccccccchhhccCchHHhh
Confidence 4556799999999999988888876654442210 00 0 012
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCcceEEEEEEeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcC--
Q 023327 102 ESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRG-- 179 (284)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~e~~ri~~~g-- 179 (284)
..+|..+|+++++.+..........||||+.+++.--+++|++|.||||++++|+++++.||.+-++..|++|+...+
T Consensus 221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ~Laf~ 300 (493)
T KOG1323|consen 221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQELAFR 300 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCCeeecccccCcHHHHHHHHHHhhc
Confidence 467999999999999877666556777777777777999999999999999999999999999999999999988653
Q ss_pred ------CeeecC------------------------------------------CCCCCccCCcchhccccCCcCC----
Q 023327 180 ------GFVSNI------------------------------------------PGDVPRVDGQLAVARAFGDKSL---- 207 (284)
Q Consensus 180 ------g~~~~~------------------------------------------~~~~~~~~~~~~ltr~lG~~~~---- 207 (284)
+....+ .+...+.-+...+||.|||-.+
T Consensus 301 ~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~Lkv~d 380 (493)
T KOG1323|consen 301 NPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHHLKVVD 380 (493)
T ss_pred ChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcceeeeec
Confidence 111110 0111122235678999998655
Q ss_pred -----CCCccCCCceEEEEeCC----CCeEEEEEcCCCcCCCCHHHHHHHHHcc------CCH---HHHHHHHHHHHHh-
Q 023327 208 -----KIHLSSEPDVKVEMITD----DTEFIILASDGIWKVMTNQEAVDCIKHV------KDA---KSAAKHLIEHAVS- 268 (284)
Q Consensus 208 -----~~~v~~~p~~~~~~l~~----~~d~llL~SDGl~d~l~~~~i~~~~~~~------~~~---~~~a~~L~~~a~~- 268 (284)
||.+++.|+++...+.+ .+|.+||+|||+||.++++++..++++. .+| ..+|+.|+..|..
T Consensus 381 snl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva~arg~ 460 (493)
T KOG1323|consen 381 SNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVAAARGQ 460 (493)
T ss_pred CCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHHHhcCc
Confidence 45688899999988872 2779999999999999999999999764 233 4678888877753
Q ss_pred ------------cCCCCCceEEEEEec
Q 023327 269 ------------RKSKDDISCIVVKFH 283 (284)
Q Consensus 269 ------------~~~~DNiTvivv~i~ 283 (284)
.++.|||||.||-+.
T Consensus 461 ~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 461 QKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred cCCCceeccCCCcCCCCceEEEEEecc
Confidence 246899999999764
No 13
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=9.7e-24 Score=176.67 Aligned_cols=203 Identities=20% Similarity=0.252 Sum_probs=138.7
Q ss_pred CCCceEEeecccCCCCceEEEEEEcCCCchH----HHHHHHHHHH----HHHHcCCCCcccHHHHHHHHHHHHHHHHHHH
Q 023327 48 AMEDYLVSEFKQEKDNELGLFAIFDGHLGHD----VANYLQTHLF----DNILKEPDFWTDTESAIRRAYHMTDTKILEQ 119 (284)
Q Consensus 48 ~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~----~a~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 119 (284)
--||++++..+ ....+.|||||+|||. -+..+++.|+ +.+.+......++...|.+++.++ .++
T Consensus 90 ~GEDa~Fvss~----~~~~v~GVADGVGGWa~~GiDpg~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l----~~~ 161 (330)
T KOG1379|consen 90 GGEDAWFVSSN----PHAIVMGVADGVGGWAEYGIDPGAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAEL----KSQ 161 (330)
T ss_pred CCCcceeeccC----cccceEEEccccchHhhcCcCHHHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHH----hhc
Confidence 56999996432 4557999999999994 2334444444 333333344446777777766554 322
Q ss_pred hcccCCCCcceEEEEEEe--CcEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeeecCCCCCCccCCcch
Q 023327 120 AFVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLA 197 (284)
Q Consensus 120 ~~~~~~~~~tt~~~~~~~--~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ 197 (284)
.. ..-|++|++++.++ +++|+++|+|||-..++|+|++..-|..+... +.. |..+...+. .
T Consensus 162 ~~--~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G~vv~~S~~Q~H~-----------FN~--PyQLs~~p~--~ 224 (330)
T KOG1379|consen 162 KV--PIVGSSTACILALDRENGKLHTANLGDSGFLVVREGKVVFRSPEQQHY-----------FNT--PYQLSSPPE--G 224 (330)
T ss_pred CC--CCCCcceeeeeeeecCCCeEEEeeccCcceEEEECCEEEEcCchheec-----------cCC--ceeeccCCc--c
Confidence 11 13366666666666 89999999999999999999999888876322 000 110000000 0
Q ss_pred hccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHcc-----CCHHHHHHHHHHHHHh----
Q 023327 198 VARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHV-----KDAKSAAKHLIEHAVS---- 268 (284)
Q Consensus 198 ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~-----~~~~~~a~~L~~~a~~---- 268 (284)
...+++|.+ -..+...+.+.+ ||.|||+||||||++.+++|..++... .+++..|+.+.+.|..
T Consensus 225 ~~~~~~d~p------~~ad~~~~~v~~-GDvIilATDGlfDNl~e~~Il~il~~~~~~~~~~lq~~A~~ia~~Ar~ls~d 297 (330)
T KOG1379|consen 225 YSSYISDVP------DSADVTSFDVQK-GDVIILATDGLFDNLPEKEILSILKGLDARGNLDLQVTAQKIAEKARELSRD 297 (330)
T ss_pred ccccccCCc------cccceEEEeccC-CCEEEEecccccccccHHHHHHHHHHhhccccccHHHHHHHHHHHHHHhccC
Confidence 133344432 356788999998 899999999999999999999998653 5789999999988873
Q ss_pred -------------------cCCCCCceEEEEEe
Q 023327 269 -------------------RKSKDDISCIVVKF 282 (284)
Q Consensus 269 -------------------~~~~DNiTvivv~i 282 (284)
.|..||||||+..+
T Consensus 298 ~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v 330 (330)
T KOG1379|consen 298 PKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV 330 (330)
T ss_pred cCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence 23589999999753
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-22 Score=186.61 Aligned_cols=250 Identities=25% Similarity=0.365 Sum_probs=204.6
Q ss_pred CCCccCCCceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcccHHHH
Q 023327 25 KGKSKMSKHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESA 104 (284)
Q Consensus 25 ~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 104 (284)
.+......-|+||++...|.|.+ +--+.. .+.++-+++...|+.+||-+..+........+...+.++.....+-.+.
T Consensus 513 ~d~~~n~~~~t~Gv~~~~gqrnk-~c~~~~-~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~ 590 (1081)
T KOG0618|consen 513 PDGNVNAFLWTYGVAGVSGQRNK-VCSRAV-WVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQ 590 (1081)
T ss_pred Cccccceeheeeccchhcccccc-hhhhhh-hhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHH
Confidence 34455567799999999999984 333332 2223345667899999999999888888887777777665544455666
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcceEEEEEEe-------CcEEEEEEeCCceEEEEeCCeeeeCCCCCCCc---hHHHH
Q 023327 105 IRRAYHMTDTKILEQAFVLGKGGSTAVTAILIN-------GQKLVVANVGDSRAVISKNGVAKQLSVDHEPS---KEKRL 174 (284)
Q Consensus 105 l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~-------~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~---~e~~r 174 (284)
++.+|...++++...+. ..|+..+.+-+.. ..+++.||+|+|.++++++|+..++|+-.... +|.+|
T Consensus 591 mr~~fl~~~rklg~~g~---~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~R 667 (1081)
T KOG0618|consen 591 MRNTFLRLNRKLGEEGQ---VLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKR 667 (1081)
T ss_pred HHHHHHHHhhhhhhhhc---cccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHH
Confidence 99999999999966654 3355554444433 24799999999999999999887777765333 39999
Q ss_pred HHHcCCeeecCCCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCC
Q 023327 175 IESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKD 254 (284)
Q Consensus 175 i~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~~ 254 (284)
++..+|++... .+.+|....||++|.....|++.+.|++....+.+.++|||+++-++|++|+-+++.+.++...+
T Consensus 668 I~~~~g~i~ed----~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~d 743 (1081)
T KOG0618|consen 668 IVDSKGFITED----NKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVED 743 (1081)
T ss_pred HHHhcCeecCC----CeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCc
Confidence 99999999852 47778889999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEec
Q 023327 255 AKSAAKHLIEHAVSRKSKDDISCIVVKFH 283 (284)
Q Consensus 255 ~~~~a~~L~~~a~~~~~~DNiTvivv~i~ 283 (284)
|-.+|.+|++.|..+|+.||++|+||++.
T Consensus 744 pL~AAkKL~d~AqSYgc~~nv~vlVv~l~ 772 (1081)
T KOG0618|consen 744 PLLAAKKLCDLAQSYGCAENVSVLVVRLN 772 (1081)
T ss_pred hHHHHHHHHHHHHhcccccCeeEEEEEee
Confidence 99999999999999999999999999985
No 15
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.86 E-value=9.7e-21 Score=157.32 Aligned_cols=178 Identities=21% Similarity=0.273 Sum_probs=97.0
Q ss_pred EeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchH----HHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHH
Q 023327 39 HLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHD----VANYLQTHLFDNILKEPDFWTD--TESAIRRAYHMT 112 (284)
Q Consensus 39 ~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~----~a~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 112 (284)
.++.|.+. +|||++.+... ++..+++|+||+||.. +|..+++.+.+.+......... ....++.+...+
T Consensus 3 ~sh~~~~~-~nqD~~~~~~~----~~~~~~aVaDG~g~~~~~~~aa~~av~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 77 (212)
T PF13672_consen 3 RSHRGRGA-PNQDAFGIRTD----DDGNLAAVADGVGGSPYGEEAAQLAVETFINYLKKLLSQESPSSIEALIRAIKKEI 77 (212)
T ss_dssp ----TTSS-S--EEEEEE-T----CCTCEEEEEEEESTTTHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCC-CCCCCEEeeeC----CCCEEEEEEECCCCCchhHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 46788887 89999984332 3345669999999764 4555555665566555443221 122233333333
Q ss_pred HHHH-----HHHhcccCCCCcceEEEEEEeCcEEEEEEeCCceEEE-EeCCeeeeCCCCCCCchHHHHHHHcCCeeecCC
Q 023327 113 DTKI-----LEQAFVLGKGGSTAVTAILINGQKLVVANVGDSRAVI-SKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIP 186 (284)
Q Consensus 113 ~~~l-----~~~~~~~~~~~~tt~~~~~~~~~~l~~~~vGDsr~~l-~~~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~ 186 (284)
...+ ..........++||++++++.++.++++|+||||+|+ .+++++..++.+|+....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~--------------- 142 (212)
T PF13672_consen 78 LSIVRAFQSAKQADLELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYP--------------- 142 (212)
T ss_dssp HHHH----HHHHHSGGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETTEEEE-S---BHHHH---------------
T ss_pred HHHhhhhhhhhhccccccccCceEEEEEEECCEEEEEEECCCeEEEEECCCEEEEcCCCccchhh---------------
Confidence 2221 1112333467899999999999999999999999965 579999999999962211
Q ss_pred CCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHH-HHHHHHc
Q 023327 187 GDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQE-AVDCIKH 251 (284)
Q Consensus 187 ~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~-i~~~~~~ 251 (284)
..+..+.... .....++..+++.+ ++.|+|||||||+.+...+ +..++.+
T Consensus 143 ----------~~~~~~~~~~----~~~~~~~~~~~~~~-~d~ilL~SDG~~~~l~~~~~~~~~l~~ 193 (212)
T PF13672_consen 143 ----------NQTRSLTGDD----PEPDVQYGSIPLEE-GDVILLCSDGVWDNLRSYEDLEQFLKD 193 (212)
T ss_dssp ----------HCTTSCCHHC----CCTETEEEEEE--T-T-EEEEE-HHHHTTS-HHHHHHHH---
T ss_pred ----------hhhhccCccc----cccCCeEEEEEcCC-CCEEEEECcCccccCCCHHHHHHHhhh
Confidence 0022222111 02234566677677 8999999999999998655 6666654
No 16
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.82 E-value=5.3e-18 Score=138.82 Aligned_cols=184 Identities=15% Similarity=0.095 Sum_probs=131.6
Q ss_pred eeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHH
Q 023327 34 ITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHMTD 113 (284)
Q Consensus 34 ~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 113 (284)
+.++.....+.. ...|.+.+... .++..+++|+||||++..|..++..+...+........ .+...+..+|
T Consensus 4 ~~~~~~~~p~~~--~~GD~~~~~~~---~~~~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~----~~~~~l~~~n 74 (193)
T smart00331 4 GLIAQYYEDATQ--VGGDFYDVVKL---PEGRLLIAIADVMGKGLAAALAMSMARSALRTLLSEGI----SLSQILERLN 74 (193)
T ss_pred eEEEEEEcchHh--cCccEEEEEEe---CCCeEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCC----CHHHHHHHHH
Confidence 445555555553 57888865332 34478999999999888888888777776654332221 2555666777
Q ss_pred HHHHHHhcccCCCCcceEEEEEE--eCcEEEEEEeCCceEEEEe-CCeeeeCCCCCCCchHHHHHHHcCCeeecCCCCCC
Q 023327 114 TKILEQAFVLGKGGSTAVTAILI--NGQKLVVANVGDSRAVISK-NGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVP 190 (284)
Q Consensus 114 ~~l~~~~~~~~~~~~tt~~~~~~--~~~~l~~~~vGDsr~~l~~-~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~ 190 (284)
+.+.... ....++|++++++ ..++++++|+||+|+|+++ ++...+.+.+.
T Consensus 75 ~~l~~~~---~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~~~~~~~~~~------------------------ 127 (193)
T smart00331 75 RAIYENG---EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADGGLVEDLDDL------------------------ 127 (193)
T ss_pred HHHHhcC---CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCCCeEEEcCCC------------------------
Confidence 7776552 2446777777776 5889999999999999998 55554444432
Q ss_pred ccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHcc--CCHHHHHHHHHHHHH
Q 023327 191 RVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHV--KDAKSAAKHLIEHAV 267 (284)
Q Consensus 191 ~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~--~~~~~~a~~L~~~a~ 267 (284)
+..+|... ...++...+.+.+ ||.|+|+|||+|+.++++++.+++++. .+++++++.+.+.+.
T Consensus 128 --------~~~lG~~~-----~~~~~~~~~~l~~-gd~l~l~TDGl~e~~~~~~l~~~l~~~~~~~~~~~~~~i~~~~~ 192 (193)
T smart00331 128 --------GAPLGLEP-----DVEVDVRELTLEP-GDLLLLYTDGLTEARNPERLEELLEELLGSPPAEIAQRILEELL 192 (193)
T ss_pred --------CceeeeCC-----CCcceeEEEeeCC-CCEEEEECCCccccCChHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 22344433 3356777888888 899999999999999999999999876 468999998887754
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.75 E-value=1.2e-16 Score=154.49 Aligned_cols=202 Identities=17% Similarity=0.158 Sum_probs=138.2
Q ss_pred CceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCCchHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Q 023327 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHLGHDVANYLQTHLFDNILKEPDFWTDTESAIRRAYHM 111 (284)
Q Consensus 32 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~GG~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (284)
.++.+|.+...-.....+.|.+.+.. .+++..+++|+||+|++..|...+..+.+.+.+......+ ...++..
T Consensus 550 ~~~~~g~a~~~k~g~~vsGD~y~~~~---l~~g~~~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~----~~~ai~~ 622 (764)
T TIGR02865 550 YHVSTGVARAAKDGELVSGDSYSFGK---LSAGKYAVAISDGMGSGPEAAQESSACVRLLEKFLESGFD----REVAIKT 622 (764)
T ss_pred eeehhhHHHhcCCCCcccCceEEEEE---ECCCEEEEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHH
Confidence 34445555444433447899986432 2355678999999997766666555544433221111111 2556677
Q ss_pred HHHHHHHHhcccCCCCcceEEEEEEe--CcEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeeecCCCCC
Q 023327 112 TDTKILEQAFVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDV 189 (284)
Q Consensus 112 ~~~~l~~~~~~~~~~~~tt~~~~~~~--~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~ 189 (284)
+|..+..... ....+|+.+++++ .+++.++++|+++.|+.+++++.+++..+.|.
T Consensus 623 lN~~L~~~~~---~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~~v~~i~s~~lPl-------------------- 679 (764)
T TIGR02865 623 VNSILSLRST---DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGAKVEVIRSSNLPI-------------------- 679 (764)
T ss_pred HHHHHHhCCC---CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECCEEEEecCCCcee--------------------
Confidence 7777654321 3356787777775 68999999999999999999888886554321
Q ss_pred CccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcCCCCHHH-----HHHHHHcc--CCHHHHHHHH
Q 023327 190 PRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWKVMTNQE-----AVDCIKHV--KDAKSAAKHL 262 (284)
Q Consensus 190 ~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d~l~~~~-----i~~~~~~~--~~~~~~a~~L 262 (284)
|-.. ..+++..+.++.+ ||+|+++|||++|..++.+ +.+++++. .+|+++++.|
T Consensus 680 -------------Gil~-----~~~~~~~~~~L~~-GD~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~~~~~p~ela~~I 740 (764)
T TIGR02865 680 -------------GILD-----EVDVELVRKKLKN-GDLIVMVSDGVLEGEKEVEGKVLWLVRKLKETNTNDPEEIAEYL 740 (764)
T ss_pred -------------Eecc-----CCccceEEEEeCC-CCEEEEECCCCCcCCcccccHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 2111 3356677888888 8999999999999876433 67777643 5899999999
Q ss_pred HHHHHhcC---CCCCceEEEEEe
Q 023327 263 IEHAVSRK---SKDDISCIVVKF 282 (284)
Q Consensus 263 ~~~a~~~~---~~DNiTvivv~i 282 (284)
++++.+.. ..||+|++++++
T Consensus 741 l~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 741 LEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHhcCCCCCCCeEEEEEEe
Confidence 99998653 479999999976
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.60 E-value=1.2e-13 Score=112.82 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=111.7
Q ss_pred CceEEEEEEcCCCchHHHHHHHHHH---HHHHHcCCCCcccHHHHHHHHHHHHHHHHHHHhcccCCCCcceEEEEEEe--
Q 023327 63 NELGLFAIFDGHLGHDVANYLQTHL---FDNILKEPDFWTDTESAIRRAYHMTDTKILEQAFVLGKGGSTAVTAILIN-- 137 (284)
Q Consensus 63 ~~~~l~~V~DG~GG~~~a~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~tt~~~~~~~-- 137 (284)
++..+++|+|++|..-.|...+..+ ++.+...... ....+..+|+.+....... ...+|++++.++
T Consensus 2 ~~~~~~~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~-------p~~~l~~ln~~l~~~~~~~--~~~~t~~~~~~d~~ 72 (193)
T PF07228_consen 2 DGRYFIIVGDVSGHGVSAALLSAALASAIRELLDEGLD-------PEELLEALNRRLYRDLKGD--NRYATACYAIIDPE 72 (193)
T ss_dssp TTEEEEEEEEESSSSHHHHHHHHHHHHHHHHHHHTTTS-------HHHHHHHHHHHHHHHTTTT--STTEEEEEEEEETT
T ss_pred CCEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhhc--cccceEEEEEeccc
Confidence 4567899999999554444444433 3333333221 4556667777775443321 245566666654
Q ss_pred CcEEEEEEeCCceEEEEeC--CeeeeCCCCCCCchHHHHHHHcCCeeecCCCCCCccCCcchhccccCCcCCCCCccCCC
Q 023327 138 GQKLVVANVGDSRAVISKN--GVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEP 215 (284)
Q Consensus 138 ~~~l~~~~vGDsr~~l~~~--~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p 215 (284)
.++++++|+|+++++++++ +....+.....+ +|-.. ...+
T Consensus 73 ~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~---------------------------------lG~~~-----~~~~ 114 (193)
T PF07228_consen 73 TGTLTYANAGHPPPLLLRPGGREIEQLESEGPP---------------------------------LGIFE-----DIDY 114 (193)
T ss_dssp TTEEEEEEESSSEEEEEETTCTEEEEETCSSBB---------------------------------CSSSC-----TTCE
T ss_pred ceEEEEeCCCCCCEEEEeccccceeecccCccc---------------------------------eeeec-----cccc
Confidence 6789999999999999997 333333222211 33322 2355
Q ss_pred ceEEEEeCCCCeEEEEEcCCCcCCCCHH-------HHHHHHHc--cCCHHHHHHHHHHHHHhc---CCCCCceEEEEEec
Q 023327 216 DVKVEMITDDTEFIILASDGIWKVMTNQ-------EAVDCIKH--VKDAKSAAKHLIEHAVSR---KSKDDISCIVVKFH 283 (284)
Q Consensus 216 ~~~~~~l~~~~d~llL~SDGl~d~l~~~-------~i~~~~~~--~~~~~~~a~~L~~~a~~~---~~~DNiTvivv~i~ 283 (284)
....+++.+ ||.|+|+||||+|....+ .+.+++.+ ..++++.++.|++.+... ...||+||+++++.
T Consensus 115 ~~~~~~l~~-gd~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 115 QEQEIQLEP-GDRLLLYTDGLFEALNEDGEFFGEERLLELLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp EEEEEE--T-TEEEEEECHHHCTTTCHHCHHCCCHHHHHHHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred cceEEEecc-ccEEEEeCCChhhccCCccchhHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 667788888 899999999999998543 34566663 357999999999998873 47899999999873
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=98.72 E-value=4.2e-06 Score=75.33 Aligned_cols=200 Identities=15% Similarity=0.123 Sum_probs=123.8
Q ss_pred CceeeeEEeecCCCCCCCCceEEeecccCCCCceEEEEEEcCCC-chHHHHHH--HHHHHHHHHcCCCCcccHHHHHHHH
Q 023327 32 KHITHGYHLVKGKSNHAMEDYLVSEFKQEKDNELGLFAIFDGHL-GHDVANYL--QTHLFDNILKEPDFWTDTESAIRRA 108 (284)
Q Consensus 32 ~~~~~~~~s~~G~~~~~neD~~~~~~~~~~~~~~~l~~V~DG~G-G~~~a~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (284)
..+.++..+..-.. ..-|.+-+... +.....++|.|..| |-.+|-.. .......+.... .-++ ...
T Consensus 147 ~~~~i~~~~~~a~~--vGGD~yd~~~~---~~~~~~i~I~DvsG~Gv~aal~m~~~~~~~~~~~~~~--~~~p----~~~ 215 (367)
T COG2208 147 PGIDIEAILVPASE--VGGDYYDFIQL---GEKRLRIGIGDVSGKGVPAALLMLMPKLALRLLLESG--PLDP----ADV 215 (367)
T ss_pred CcccceeeEeEHHH--cCCceEEEEEE---CCcEEEEEEEeccCCCHHHHHHHHHHHHHHHHhhhcc--cCCH----HHH
Confidence 33444444433332 45676664332 23578899999888 44444331 112222222221 1222 334
Q ss_pred HHHHHHHHHHHhcccCCCCcceEEEEEEe--CcEEEEEEeCCceEEEEeCCee---eeCCCCCCCchHHHHHHHcCCeee
Q 023327 109 YHMTDTKILEQAFVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVA---KQLSVDHEPSKEKRLIESRGGFVS 183 (284)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~tt~~~~~~~--~~~l~~~~vGDsr~~l~~~~~~---~~lt~dh~~~~e~~ri~~~gg~~~ 183 (284)
+..+|+.+...... ..-+|+...+++ .+.+.++++|---.++++.+.. ..+.
T Consensus 216 l~~~n~~~~~~~~~---~~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~~~~~~~~l~-------------------- 272 (367)
T COG2208 216 LETLNRVLKQNLEE---DMFVTLFLGVYDLDSGELTYSNAGHEPALILSADGEIEVEDLT-------------------- 272 (367)
T ss_pred HHHHHHHHHhcccC---CcEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcCCCceeEEcc--------------------
Confidence 45556666554432 255676666665 6789999999999888875432 2222
Q ss_pred cCCCCCCccCCcchhccccCCcCCCCCccCCCceEEEEeCCCCeEEEEEcCCCcC-------CCCHHHHHHHHHcc--CC
Q 023327 184 NIPGDVPRVDGQLAVARAFGDKSLKIHLSSEPDVKVEMITDDTEFIILASDGIWK-------VMTNQEAVDCIKHV--KD 254 (284)
Q Consensus 184 ~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p~~~~~~l~~~~d~llL~SDGl~d-------~l~~~~i~~~~~~~--~~ 254 (284)
.....+|-.+ ...+.+....+.+ ||.+++.|||+.+ .+..+...+++.+. .+
T Consensus 273 -------------~~g~piG~~~-----~~~~~~~~~~l~~-gd~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~ 333 (367)
T COG2208 273 -------------ALGLPIGLLP-----DYQYEVASLQLEP-GDLLVLYTDGVTEARNSDGEFFGLERLLKILGRLLGQP 333 (367)
T ss_pred -------------CCCceeeecC-----CccchheeEEecC-CCEEEEEcCCeeeeecCCccEecHHHHHHHHHHHhCCC
Confidence 2223344443 4567778888888 8999999999998 56677777777632 57
Q ss_pred HHHHHHHHHHHHHhc----CCCCCceEEEEEecC
Q 023327 255 AKSAAKHLIEHAVSR----KSKDDISCIVVKFHR 284 (284)
Q Consensus 255 ~~~~a~~L~~~a~~~----~~~DNiTvivv~i~~ 284 (284)
|+++++.+.+..... ...||+|++++++++
T Consensus 334 ~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~~ 367 (367)
T COG2208 334 AEEILEAILESLEELQGDQIQDDDITLLVLKVKK 367 (367)
T ss_pred HHHHHHHHHHHHHHhhCCccccCceEEEEEEecC
Confidence 888888888776653 346889999999864
No 20
>PRK10693 response regulator of RpoS; Provisional
Probab=82.72 E-value=18 Score=31.54 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=55.3
Q ss_pred CCceEEeecccCCCCceEEEEEEc--CCCchH-HHHHHHHHHHHHHHcCC-----CCcccHHHHHHHHHHHHHHHHHHHh
Q 023327 49 MEDYLVSEFKQEKDNELGLFAIFD--GHLGHD-VANYLQTHLFDNILKEP-----DFWTDTESAIRRAYHMTDTKILEQA 120 (284)
Q Consensus 49 neD~~~~~~~~~~~~~~~l~~V~D--G~GG~~-~a~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~l~~~~ 120 (284)
.-|.+-+.. -+++...|.++| |||++. .|......++..++... ....+ ....+..+|+.+....
T Consensus 150 ~GD~~d~~~---l~~~~~~~~~~DvsGhg~hg~~aa~l~~~~~~~~~~~~~~~~~~~~~~----p~~~l~~lN~~l~~~~ 222 (303)
T PRK10693 150 PGLVLDIAA---LSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPE----LGALLKQVNHLLRQAN 222 (303)
T ss_pred CccEEeeee---cCCCcEEEEEEecCCCCcccHHHHHHHHHHHHHHHHHHhcccccccCC----HHHHHHHHHHHHHhcC
Confidence 556665322 234456667777 888663 34444555455444321 11112 3455667777776652
Q ss_pred cccCCCCcceEEEEEEe--CcEEEEEEeCCceEEEEeCCee
Q 023327 121 FVLGKGGSTAVTAILIN--GQKLVVANVGDSRAVISKNGVA 159 (284)
Q Consensus 121 ~~~~~~~~tt~~~~~~~--~~~l~~~~vGDsr~~l~~~~~~ 159 (284)
.. .. -|+...+++ .+++.+++.|-...++..++++
T Consensus 223 ~~---~~-~t~~~~~~d~~~~~l~~~~AGhp~~~~~~~~~~ 259 (303)
T PRK10693 223 LP---GQ-FPLLVGYYHRELKNLILVSAGLNATLNTGEHQV 259 (303)
T ss_pred CC---ce-eeEEEEEEEcCCCeEEEEeCCCCCEEecCCeEE
Confidence 21 12 355555554 5689999999999885434434
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=65.04 E-value=4.2 Score=27.23 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=17.1
Q ss_pred CCCCeEEEEEcCCCcCCCCHHHH
Q 023327 223 TDDTEFIILASDGIWKVMTNQEA 245 (284)
Q Consensus 223 ~~~~d~llL~SDGl~d~l~~~~i 245 (284)
...|+.+++++||+|=.+...-+
T Consensus 24 ~~~G~Rllva~nGv~lEv~r~WL 46 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVRRPWL 46 (72)
T ss_pred ccCCcEEEEecCcEEEEEechHH
Confidence 33589999999999966554443
No 22
>COG2168 DsrH Uncharacterized conserved protein involved in oxidation of intracellular sulfur [Inorganic ion transport and metabolism]
Probab=46.81 E-value=9.8 Score=26.98 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=32.3
Q ss_pred CeEEEEEcCCCcCCCCHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCce
Q 023327 226 TEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKHLIEHAVSRKSKDDIS 276 (284)
Q Consensus 226 ~d~llL~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~~~~DNiT 276 (284)
+|-++|+.|||+-.+...+..+-++.. | ..+=.|.+--.+||-.+.++
T Consensus 25 ~D~vlL~qdGV~aAl~~~~~~~sl~~~--p-~~~~alkeDl~ARGl~~~~s 72 (96)
T COG2168 25 GDAVLLLQDGVYAALKGNRYLASLRES--P-IKVYALKEDLLARGLTGQIS 72 (96)
T ss_pred cCeEEEEcccchhhhcCcHHHHHHhcC--c-cceeeehhhHHhccchhhcC
Confidence 788999999999999888877777653 2 22334445555666544443
No 23
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=37.08 E-value=46 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHcc-CCHHHHHHHHHH
Q 023327 239 VMTNQEAVDCIKHV-KDAKSAAKHLIE 264 (284)
Q Consensus 239 ~l~~~~i~~~~~~~-~~~~~~a~~L~~ 264 (284)
..+++||...+++. .+|.+++++|+.
T Consensus 18 ~hse~eIya~L~ecnMDpnea~qrLL~ 44 (60)
T PF06972_consen 18 CHSEEEIYAMLKECNMDPNEAVQRLLS 44 (60)
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 36889999999876 599999999986
No 24
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=34.75 E-value=76 Score=25.55 Aligned_cols=45 Identities=22% Similarity=0.413 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCcC-----------CCCHHHHHHHHHcc----CCHHHHHHHHHHHHHhcC
Q 023327 226 TEFIILASDGIWK-----------VMTNQEAVDCIKHV----KDAKSAAKHLIEHAVSRK 270 (284)
Q Consensus 226 ~d~llL~SDGl~d-----------~l~~~~i~~~~~~~----~~~~~~a~~L~~~a~~~~ 270 (284)
+|.+|..|.|+|. +|.++..=+.+... .-|.+.|..|++.-.+||
T Consensus 71 DDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RG 130 (237)
T COG3700 71 DDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRG 130 (237)
T ss_pred CCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcC
Confidence 5678999999984 44444444444332 358999999999988876
No 25
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=31.64 E-value=2.7e+02 Score=23.36 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=27.7
Q ss_pred ceEEEEEEe-CcEEEEEEeCCceEEE--EeCCeeeeCCCCCCC
Q 023327 129 TAVTAILIN-GQKLVVANVGDSRAVI--SKNGVAKQLSVDHEP 168 (284)
Q Consensus 129 tt~~~~~~~-~~~l~~~~vGDsr~~l--~~~~~~~~lt~dh~~ 168 (284)
++++++-++ .+++...---||.+.+ +|+|..+|--.+|+.
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsa 274 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSA 274 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcc
Confidence 444444444 5677777777888755 578888888888864
No 26
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=24.28 E-value=1.2e+02 Score=26.08 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=32.5
Q ss_pred EEEEEc-CCCchHHHHHHHHHHHHHHH----c--CCCCcccHHHHHHHHHHHHHHHHHHHh
Q 023327 67 LFAIFD-GHLGHDVANYLQTHLFDNIL----K--EPDFWTDTESAIRRAYHMTDTKILEQA 120 (284)
Q Consensus 67 l~~V~D-G~GG~~~a~~~~~~~~~~~~----~--~~~~~~~~~~~l~~~~~~~~~~l~~~~ 120 (284)
-.+||| |+||-.+...+.+.+...-+ . ..++.+..++.|++...++-..+.++.
T Consensus 7 ~IgvFDSGVGGLsVlrei~~~LP~e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ 67 (269)
T COG0796 7 PIGVFDSGVGGLSVLREIRRQLPDEDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERG 67 (269)
T ss_pred eEEEEECCCCcHHHHHHHHHHCCCCcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 578999 89999998887777654322 1 123333345555555555555555543
No 27
>COG5518 Bacteriophage capsid portal protein [General function prediction only]
Probab=23.44 E-value=59 Score=29.18 Aligned_cols=136 Identities=18% Similarity=0.170 Sum_probs=74.3
Q ss_pred EeCcEEEEEEeCCceEEEEeCCeeeeCCCCCCCchHHHHHHHcCCeeecCCCCCCccCCcchhccccCCcCCCCCccCCC
Q 023327 136 INGQKLVVANVGDSRAVISKNGVAKQLSVDHEPSKEKRLIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSEP 215 (284)
Q Consensus 136 ~~~~~l~~~~vGDsr~~l~~~~~~~~lt~dh~~~~e~~ri~~~gg~~~~~~~~~~~~~~~~~ltr~lG~~~~~~~v~~~p 215 (284)
++.+++|+-.-||-|.|=++.|+....+.-..+++|.--.. -|..+.. .|+.- .++...+|.... -+.
T Consensus 190 ID~k~v~FkeyGdpr~~d~~~G~yv~~~~le~~ane~ih~k-Igs~~YG----~Prwi--g~ivslygarkA-----eel 257 (492)
T COG5518 190 IDLKTVWFKEYGDPRPYDFTTGNYVSMFHLEEPANEDIHQK-IGSGAYG----LPRWI--GAIVSLYGARKA-----EEL 257 (492)
T ss_pred eccceEEEEecCCCcceeeccCccchhhhhhcchhhhHHHh-hcccccC----chHHH--HHHHHHHhhhhH-----HHH
Confidence 55678999999999999999997666665555555421111 1111110 01110 122222232210 000
Q ss_pred ceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHccCCHHHHHHHHHHHHHhc-----CCCCCceEEEEEec
Q 023327 216 DVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKHVKDAKSAAKHLIEHAVSR-----KSKDDISCIVVKFH 283 (284)
Q Consensus 216 ~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~-----~~~DNiTvivv~i~ 283 (284)
.+..+.-...--++|..+||..+.-+-..+.+.+.....|+.+-+.|+-++.-. ....|+|=|-|.|+
T Consensus 258 n~~YfknGrH~paai~~~~g~l~e~~y~~L~eyMk~~~g~eNa~~flm~e~~G~~~kn~hgd~~i~~vkV~Ik 330 (492)
T COG5518 258 NRMYFKNGRHAPAAIYMTDGALSEEDYNNLREYMKSAKGPENARNFLMYEPNGKKIKNAHGDGNISPVKVQIK 330 (492)
T ss_pred HHHHHhcCccCceEEEecccccchHHHHHHHHHHhhcCCchhhhhheeeccCCeeccccCCCCCcCceeEEee
Confidence 001111111123789999999888888888888887777776666665444321 23457776666653
No 28
>TIGR03735 PRTRC_A PRTRC system protein A. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated protein A.
Probab=23.39 E-value=49 Score=26.89 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=32.8
Q ss_pred CCCCeEEEEEcCCCcCCCCHHHHHHHHHcc---------------------CCHHHHHHHHHHHHHhc
Q 023327 223 TDDTEFIILASDGIWKVMTNQEAVDCIKHV---------------------KDAKSAAKHLIEHAVSR 269 (284)
Q Consensus 223 ~~~~d~llL~SDGl~d~l~~~~i~~~~~~~---------------------~~~~~~a~~L~~~a~~~ 269 (284)
...|..+++++||+|=.+....+..+..=. .=|....+++++.|.+.
T Consensus 23 ~~~g~r~~~a~~G~~lev~r~wl~~~~~~~~~~~~~~PYg~~~~~~~~~~g~Ip~~l~~~ii~hAr~~ 90 (192)
T TIGR03735 23 EKPGHRFIVAADGVWREVRRPWLHAIQRVAPASPITVPYGAVEETLEFLCGPIPASLLEEFAEAARAA 90 (192)
T ss_pred ccCCcEEEEecCcEEEEEecHHHHHHHHhcccccccccceeeeeeEEEecCCCCHHHHHHHHHHHHhc
Confidence 344899999999999877766665443211 12567788888888764
No 29
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=23.08 E-value=1.3e+02 Score=15.66 Aligned_cols=19 Identities=21% Similarity=0.316 Sum_probs=15.6
Q ss_pred EeCcEEEEEEeCCceEEEE
Q 023327 136 INGQKLVVANVGDSRAVIS 154 (284)
Q Consensus 136 ~~~~~l~~~~vGDsr~~l~ 154 (284)
..++.+|++-.|..|+..+
T Consensus 10 ~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 10 DSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp ETTSEEEEEECCCTEEEEE
T ss_pred eCCCCEEEEECCCCEEEEC
Confidence 3788999999999988654
No 30
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=22.25 E-value=1.2e+02 Score=21.19 Aligned_cols=20 Identities=15% Similarity=0.434 Sum_probs=14.7
Q ss_pred ceEEEEeCCCCeEEEEEcCC
Q 023327 216 DVKVEMITDDTEFIILASDG 235 (284)
Q Consensus 216 ~~~~~~l~~~~d~llL~SDG 235 (284)
.+....++.+||.++|+||.
T Consensus 43 ~~~L~YlDDEgD~VllT~D~ 62 (86)
T cd06409 43 LYALSYVDDEGDIVLITSDS 62 (86)
T ss_pred cccEEEEcCCCCEEEEeccc
Confidence 34445566669999999996
No 31
>PRK02391 heat shock protein HtpX; Provisional
Probab=22.17 E-value=85 Score=27.42 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCcCCCCHHHHHHHHHc
Q 023327 226 TEFIILASDGIWKVMTNQEAVDCIKH 251 (284)
Q Consensus 226 ~d~llL~SDGl~d~l~~~~i~~~~~~ 251 (284)
...+|+.|||+.+.++++|+..++.-
T Consensus 114 ~~~~V~vt~gLl~~L~~~El~aVlaH 139 (296)
T PRK02391 114 KNAVVCVTTGLMRRLDPDELEAVLAH 139 (296)
T ss_pred CCcEEEecHHHHhhCCHHHHHHHHHH
Confidence 34678999999999999999988843
No 32
>PRK03982 heat shock protein HtpX; Provisional
Probab=20.89 E-value=1.1e+02 Score=26.41 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.4
Q ss_pred eEEEEEcCCCcCCCCHHHHHHHHHc
Q 023327 227 EFIILASDGIWKVMTNQEAVDCIKH 251 (284)
Q Consensus 227 d~llL~SDGl~d~l~~~~i~~~~~~ 251 (284)
+..|..|||+.+.++++|+..++.-
T Consensus 107 ~~~V~vt~gLl~~l~~~El~AVlAH 131 (288)
T PRK03982 107 HAVVAVTEGILNLLNEDELEGVIAH 131 (288)
T ss_pred CeEEEeehHHHhhCCHHHHHHHHHH
Confidence 4568899999999999999988843
No 33
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=20.63 E-value=1.9e+02 Score=24.44 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=36.1
Q ss_pred cHHHHHHhhhhhcccccCCCCCCCCccCCCceeeeEEeecCCCCCCCCceEEeecc---------c-----CCCCceEEE
Q 023327 3 GKEILQKMKVKAGFCTSALDTGKGKSKMSKHITHGYHLVKGKSNHAMEDYLVSEFK---------Q-----EKDNELGLF 68 (284)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~G~~~~~neD~~~~~~~---------~-----~~~~~~~l~ 68 (284)
..+++.+|+.-|.--+.++-++--.......=-|-.+++.+.+. -|++.+..- . +.......+
T Consensus 69 G~~l~d~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~---~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaC 145 (322)
T KOG0404|consen 69 GPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVT---ADAVILATGASAKRLHLPGEGEGEFWQRGISAC 145 (322)
T ss_pred cHHHHHHHHHHHHhhcceeeeeehhhccccCCCeEEEecCCcee---eeeEEEecccceeeeecCCCCcchHHhcccchh
Confidence 45788999998884444444333222222222244456655544 455553110 0 122345689
Q ss_pred EEEcC
Q 023327 69 AIFDG 73 (284)
Q Consensus 69 ~V~DG 73 (284)
+||||
T Consensus 146 AVCDG 150 (322)
T KOG0404|consen 146 AVCDG 150 (322)
T ss_pred hcccC
Confidence 99999
No 34
>PRK05457 heat shock protein HtpX; Provisional
Probab=20.32 E-value=1.2e+02 Score=26.30 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=26.4
Q ss_pred CceEEEEeCCCCeEEEEEcCCCcCCCCHHHHHHHHHc
Q 023327 215 PDVKVEMITDDTEFIILASDGIWKVMTNQEAVDCIKH 251 (284)
Q Consensus 215 p~~~~~~l~~~~d~llL~SDGl~d~l~~~~i~~~~~~ 251 (284)
|.-......+ ...+|+.|+|+.+.++++|+..++.-
T Consensus 105 ~NAfa~G~~~-~~~~V~vt~gLl~~L~~~El~aVlAH 140 (284)
T PRK05457 105 INAFATGASK-NNSLVAVSTGLLQNMSRDEVEAVLAH 140 (284)
T ss_pred ceEEEecCCC-CCeEEEeehHHhhhCCHHHHHHHHHH
Confidence 3333333333 45789999999999999999988853
Done!