BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023328
(284 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 228/326 (69%), Positives = 253/326 (77%), Gaps = 48/326 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
MPS IT RLP+L+DLEAYA+GQWECFLLQLISS Q E+ TNFSSS+MKVFQRGLL Q
Sbjct: 125 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSLMKVFQRGLLTQREK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G EAY
Sbjct: 185 EAPRLTESGFQFLLMDTNAQLWYIMREYISNSEERGVDPADLISFLLELSFHVTG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
N+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLSMSL+D+S+RK+GFVVVE
Sbjct: 243 NINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLSMSLSDTSSRKQGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYS+SKLHCEILRLFS++EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ
Sbjct: 303 TNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA+R P+VPENV DQIRLWE+DLNRVE P+H Y+EFPSRDVFEAACD+AR+ G
Sbjct: 363 NAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLR 280
LLWEDSKKMRLVV AEIH+HMRE+LR
Sbjct: 423 LLWEDSKKMRLVVKAEIHLHMREYLR 448
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 227/328 (69%), Positives = 255/328 (77%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
+ S I RLPTLE+L+ YA+GQWECFLL LI+S AER TNFSSSMMK+FQRGLL Q
Sbjct: 125 LASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFSSSMMKIFQRGLLTQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G EAY
Sbjct: 185 EAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHITG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
N+ L+E QR+MIKD ADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS+RK+GFVVVE
Sbjct: 243 NMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSSRKQGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKLHCEI+RLFS++EYQLPNL+VGA+TKESLY+AFENGITAEQIISFLQQ
Sbjct: 303 TNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTKESLYSAFENGITAEQIISFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA+RIPSVPENV DQIRLWESD+NRVEMTPAH Y+EFPSRDVFEAAC++ARD +G
Sbjct: 363 NAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHLYDEFPSRDVFEAACNFARDWNG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSK+MR+VV AEIH++MRE+LRGQ
Sbjct: 423 LLWEDSKRMRMVVKAEIHLNMREYLRGQ 450
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 228/328 (69%), Positives = 254/328 (77%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
MPS IT RLP+LEDLEAYA+ QWECFLLQLI+S QAE+P+N SSS+MKVFQ+GLL Q
Sbjct: 125 MPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G EAY
Sbjct: 185 EAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+++TLS+ QR IKD ADLGLVKLQQGRKESWFIPTKLATNLSMSL DSS+RK GFVVVE
Sbjct: 243 DIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRKLGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKLHCEILRLFS+IEYQLPNLIVGAITKESLYNAF+NGITAEQI++FLQQ
Sbjct: 303 TNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITKESLYNAFKNGITAEQIVTFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA+RIPSVPENV DQIRLWESDLNRV++TPAH+Y+EFPSR+VFEAACDYAR+ +G
Sbjct: 363 NAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHFYDEFPSREVFEAACDYAREWNG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSK +RLVV A+IH HMRE LR Q
Sbjct: 423 LLWEDSKNLRLVVKADIHTHMREHLRRQ 450
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/323 (68%), Positives = 253/323 (78%), Gaps = 48/323 (14%)
Query: 6 TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ-------- 57
+LP+LE+L+ YA+ QWECFLL LISS QAE+PT+ SSSMMK+FQRGLL Q
Sbjct: 128 VVKLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLSSSMMKIFQRGLLSQRDRDAPRL 187
Query: 58 --------------------------------------SILRSLKFLCQGILEAYNLNTL 79
S L L F G EAYN+NTL
Sbjct: 188 TEGGFQFLLMDTNAQLWYIIREYITNSEERGTEPADLISFLLELSFHVTG--EAYNMNTL 245
Query: 80 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRM 139
+EIQR+ IKD A+LGLVKLQQGRKESWFIPTKLATNLS+SLTDSS+RK+G+VVVETNFR+
Sbjct: 246 TEIQRNTIKDLAELGLVKLQQGRKESWFIPTKLATNLSVSLTDSSSRKQGYVVVETNFRL 305
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAYS+SKLHCEILRLFSKIEYQLPNLIVGAITKESLY AFENGIT++QIISFLQQNAHPR
Sbjct: 306 YAYSSSKLHCEILRLFSKIEYQLPNLIVGAITKESLYTAFENGITSDQIISFLQQNAHPR 365
Query: 200 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
VA+R+PSVPENV DQIRLWE+DLNRVE+TP+H+Y+EFPSRD FEAACD+AR+ +GLLWED
Sbjct: 366 VAERLPSVPENVTDQIRLWEADLNRVEITPSHFYDEFPSRDTFEAACDFAREWNGLLWED 425
Query: 260 SKKMRLVVNAEIHMHMREFLRGQ 282
SKKMR+VV AEIHM+MREFLRGQ
Sbjct: 426 SKKMRVVVKAEIHMNMREFLRGQ 448
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/328 (66%), Positives = 249/328 (75%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
MPS IT RLPTLEDLE YA+ QWECFLLQLIS + ++ N SSS+MKVFQR LL Q
Sbjct: 126 MPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDR 185
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S + L F G EAY
Sbjct: 186 EAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIG--EAY 243
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
N+NTL+E QR++IKD ADLGLVKLQQGRKESWFIPTKLATNLS+S+T+SS+RKEGFVVVE
Sbjct: 244 NINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVE 303
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLYNAF+NGITA+QI+SFL+Q
Sbjct: 304 TNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQ 363
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA R+P+VPENV DQIRLWESDLNRVEMT A+YY+EFPSRDVFE ACD AR+ SG
Sbjct: 364 NAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSG 423
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSKKM LVV +E+H ++R+FLR Q
Sbjct: 424 LLWEDSKKMHLVVKSEVHTYVRDFLRRQ 451
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/328 (66%), Positives = 248/328 (75%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
MPS IT RLPTLEDLE YA+ QWECFLLQLIS + ++ N SSS+MKVFQR LL Q
Sbjct: 125 MPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKVFQRRLLSQRDR 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S + L F G EAY
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
N+NTL+E QR++IKD ADLGLVKLQQGRKESWFIPTKLATNLS+S+T+SS+RKEGFVVVE
Sbjct: 243 NINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLYNAF+NGITA+QI+SF +Q
Sbjct: 303 TNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFFRQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA RIP+VPENV DQIRLWESDLNRVEMT A+YY+EFPSRDVFE ACD AR+ SG
Sbjct: 363 NAHPRVAQRIPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSKKM LVV +E+H ++R+FLR Q
Sbjct: 423 LLWEDSKKMHLVVKSEVHTYVRDFLRRQ 450
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/326 (65%), Positives = 249/326 (76%), Gaps = 44/326 (13%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
MPS IT RLPTLE+LEAYA+ QWECFLLQLIS +Q E+P N SSS+MKVFQR +L
Sbjct: 125 MPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSYRDK 184
Query: 56 --------------------IQSILRS-------------------LKFLCQGILEAYNL 76
+ I+R L+ I EAY++
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHDIGEAYSV 244
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETN 136
+TL+ QR++I D ADLGLVK+QQGRK SWFIPTKLATNLSMSL DSS+RK+GFVVVETN
Sbjct: 245 DTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVVVETN 304
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
FR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLY+AFENGITAEQII+FLQQNA
Sbjct: 305 FRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITAEQIITFLQQNA 364
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
HPRVA+RIPSVPENV +QIRLWE+DLNRVEMT A+YY+EFPSRDVFE ACD AR+ +GLL
Sbjct: 365 HPRVAERIPSVPENVTEQIRLWEADLNRVEMTDAYYYDEFPSRDVFEGACDCAREWNGLL 424
Query: 257 WEDSKKMRLVVNAEIHMHMREFLRGQ 282
WEDSKKM +VV E+H ++R++LR Q
Sbjct: 425 WEDSKKMHMVVKTEVHQYVRDYLRRQ 450
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/328 (63%), Positives = 247/328 (75%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
MPS IT RLPTLE+LEAYA+ QWECFLLQLIS +Q E+P N SSS+MKVFQR +L
Sbjct: 125 MPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISSSLMKVFQRRILSHRDK 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S + L F G EAY
Sbjct: 185 EAPKLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDAADLISFMLELSFHVIG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+++TL+ QR++I D ADLGLVK+QQGRK SWFIPTKLATNLSMSL DSS+RK+GFVVVE
Sbjct: 243 SVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLATNLSMSLADSSSRKQGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLY+A+ENGITAEQI++FLQQ
Sbjct: 303 TNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAYENGITAEQIVTFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVA+R+PSVPENV +QIRLWE+DLNRVEMT +YY+EFPSRDVFE ACD AR+ +G
Sbjct: 363 NAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYYDEFPSRDVFEGACDCAREWNG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSKKM +VV E+H ++R++LR Q
Sbjct: 423 LLWEDSKKMHMVVKTEVHPYVRDYLRRQ 450
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/330 (62%), Positives = 244/330 (73%), Gaps = 48/330 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
M S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL Q
Sbjct: 125 MNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G +AY
Sbjct: 185 DGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG--QAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
NLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGFVV+E
Sbjct: 243 NLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVME 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+FLQQ
Sbjct: 303 TNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
N+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR+ G
Sbjct: 363 NSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 423 LLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/330 (62%), Positives = 242/330 (73%), Gaps = 48/330 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
M S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMM++FQRGLL Q
Sbjct: 125 MHSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMRIFQRGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G EAY
Sbjct: 185 DGPRLTESGFQFLLMDTNAQLWYIIREYISNAEERDVEPADLISFLLELSFHVTG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
N NTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGFVV+E
Sbjct: 243 NSNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVME 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+FLQQ
Sbjct: 303 TNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
N+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR+ G
Sbjct: 363 NSHPRCADRVPSIPENVTDQIRLWETDLKRIEMTQAHFYDEFPSKDVFEAACDFAREWGG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LLWEDSK+MRLVV +E+H MREFL Q K
Sbjct: 423 LLWEDSKRMRLVVKSEVHNQMREFLHNQTK 452
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/330 (62%), Positives = 244/330 (73%), Gaps = 48/330 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
M S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL Q
Sbjct: 125 MNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G +AY
Sbjct: 185 DGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG--QAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
NLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGFVV+E
Sbjct: 243 NLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVME 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+FLQQ
Sbjct: 303 TNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
N+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR+ G
Sbjct: 363 NSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 423 LLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/329 (62%), Positives = 243/329 (73%), Gaps = 48/329 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
M S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL Q
Sbjct: 125 MNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G +AY
Sbjct: 185 DGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG--QAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
NLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGFVV+E
Sbjct: 243 NLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVME 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF+NGIT++QII+FLQQ
Sbjct: 303 TNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFDNGITSDQIITFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
N+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR+ G
Sbjct: 363 NSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
LLWEDSK+MRLVV +E+H MREFL Q+
Sbjct: 423 LLWEDSKRMRLVVKSEVHNQMREFLHTQS 451
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/330 (62%), Positives = 243/330 (73%), Gaps = 48/330 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
M S +LP+L++LE YA+ QWECFLLQLI+S Q E+ T SSSMMK+FQRGLL Q
Sbjct: 125 MNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGISSSMMKIFQRGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G +AY
Sbjct: 185 DGPRLTESGFQFLLMDTNAQLWYIIREYILNAEERDVDPADLISFLLELSFHVTG--QAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
NLNTL+E+Q + +KD ADLGLVKLQQGRK+SWFIPTKLATNLS+SL DSSARKEGFVV+E
Sbjct: 243 NLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKLATNLSVSLADSSARKEGFVVME 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITKESLYNAF NGIT++QII+FLQQ
Sbjct: 303 TNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITKESLYNAFGNGITSDQIITFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
N+HPR ADR+PS+PENV DQIRLWE+DL R+EMT AH+Y+EFPS+DVFEAACD+AR+ G
Sbjct: 363 NSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDEFPSKDVFEAACDFAREWRG 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LLWEDSK+MRLVV +E+H MREFL Q++
Sbjct: 423 LLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/326 (64%), Positives = 245/326 (75%), Gaps = 48/326 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+PS +TARLPTL +LE++A+ QWECFLLQLI+S+Q ER T+FSSSMM+ FQRGLL
Sbjct: 125 IPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G EAY
Sbjct: 185 EAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+LNTL+++QR+ I+D A+LGLVKLQQGRK+SWFIPTKLATNLS SL+DSS+ KEGFVVVE
Sbjct: 243 SLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQ
Sbjct: 303 TNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FPS+D+F+ CDYARD
Sbjct: 363 NAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGC 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLR 280
LLWED+KKMRL+V E H MREFLR
Sbjct: 423 LLWEDAKKMRLIVRVEFHSEMREFLR 448
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 209/334 (62%), Positives = 245/334 (73%), Gaps = 56/334 (16%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+PS +TARLPTL +LE++A+ QWECFLLQLI+S+Q ER T+FSSSMM+ FQRGLL
Sbjct: 125 IPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFSSSMMRTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G EAY
Sbjct: 185 EAPRLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQ--------GRKESWFIPTKLATNLSMSLTDSSAR 126
+LNTL+++QR+ I+D A+LGLVKLQQ GRK+SWFIPTKLATNLS SL+DSS+
Sbjct: 243 SLNTLTDVQRNAIRDLAELGLVKLQQMSRVKPWQGRKDSWFIPTKLATNLSASLSDSSSN 302
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
KEGFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY AFENGITAE
Sbjct: 303 KEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAE 362
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FPS+D+F+ C
Sbjct: 363 QIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCC 422
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
DYARD LLWED+KKMRL+V E H MREFLR
Sbjct: 423 DYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 456
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/328 (62%), Positives = 239/328 (72%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ ++FSSSMMK FQRGLL
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G AY
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG--AAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+LNTL+++QR I+D A+LGLVK QQGRK+SWFIPT+LATNLS SL+DSS+ KEGFVVVE
Sbjct: 243 SLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQLATNLSASLSDSSSNKEGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TKES+Y AFENGITAEQIISFL+Q
Sbjct: 303 TNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFLRQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVAD+IP+VPENV DQIRLWE+DLNRVEM P+H YE+FPS++ FE CDYARD
Sbjct: 363 NAHPRVADKIPAVPENVTDQIRLWETDLNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGY 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWED K+MRL+V E H MREFLR Q
Sbjct: 423 LLWEDPKRMRLIVRGEFHPEMREFLRRQ 450
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/328 (62%), Positives = 237/328 (72%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ T+FSSSMMK FQRGLL
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G AY
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG--AAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+LNTL+++QR I+D A+LGLVK QQGR + WFIPT+LATNLS SL+DSS+ KEGFVVVE
Sbjct: 243 SLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWFIPTQLATNLSASLSDSSSNKEGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKLHCEILRLFS++EYQLPNLIVGA+TKES+Y AFENGITAEQIISFL+Q
Sbjct: 303 TNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFLRQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRVAD+IP+VPENV DQIRLWE+D NRVEM P+H YE+FPS++ FE CDYARD
Sbjct: 363 NAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDNGY 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSK+MRL+V E H MREFLR Q
Sbjct: 423 LLWEDSKRMRLIVRGEFHPEMREFLRRQ 450
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 205/328 (62%), Positives = 236/328 (71%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+P +TARLPTL +LE YA+ QWECFLLQLI+S+Q E+ T FSSSMMK FQRGLL
Sbjct: 125 LPFNVTARLPTLVELENYALEQWECFLLQLINSSQVEKGTTFSSSMMKTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F QG AY
Sbjct: 185 EAAKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTDLISFLLELSFHTQG--AAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+L+TL+E+QR + D +LGLVKLQQGRK+SWFIPTKLATNLS SL+DS+A KEG VVVE
Sbjct: 243 SLSTLTEVQRIAVMDLMELGLVKLQQGRKDSWFIPTKLATNLSSSLSDSAASKEGIVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYS SKLHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQIISFLQQ
Sbjct: 303 TNFRLYAYSASKLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLQQ 362
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHPRV D+IP VPENV DQIRLWE+D NRVEM +H YE+FPS+D+FE CD+ARD
Sbjct: 363 NAHPRVIDKIPIVPENVTDQIRLWENDRNRVEMILSHVYEDFPSKDMFEQCCDHARDNGY 422
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWED+KKMRL+V+ E H MREFLR Q
Sbjct: 423 LLWEDAKKMRLIVSGEFHQEMREFLRRQ 450
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/328 (62%), Positives = 235/328 (71%), Gaps = 48/328 (14%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+PS +T RLPTL +LE YA+ QWECFLLQLI+S+Q ER T+FSSSMMK FQRGLL
Sbjct: 126 IPSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLSSRDG 185
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G AY
Sbjct: 186 DAPKLSENGFQFLLMETNVQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG--AAY 243
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+ NTL+++QR I+D A+LGLVK+QQGRK+SWFIPTKLATNLS SL+DSSA KEG VVVE
Sbjct: 244 SFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVVVE 303
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQIISFL+Q
Sbjct: 304 TNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLKQ 363
Query: 195 NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
NAHP VAD+IP VPENV DQIRLWE+D NRV+M +H YE+FPS+D+FE CD ARD
Sbjct: 364 NAHPXVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDLFEQCCDLARDNGF 423
Query: 255 LLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LLWEDSKKMRL+V E H MREFLR Q
Sbjct: 424 LLWEDSKKMRLIVRVEFHQEMREFLRRQ 451
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/326 (62%), Positives = 234/326 (71%), Gaps = 48/326 (14%)
Query: 3 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL------- 55
S +T RLPTL +LE YA+ QWECFLLQLI+S+Q ER T+FSSSMMK FQRGLL
Sbjct: 127 SSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFSSSMMKTFQRGLLSSRDGDA 186
Query: 56 ---------------------------------------IQSILRSLKFLCQGILEAYNL 76
+ S L L F G AY+
Sbjct: 187 PKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLG--AAYSF 244
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETN 136
NTL+++QR I+D A+LGLVK+QQGRK+SWFIPTKLATNLS SL+DSSA KEG VVVETN
Sbjct: 245 NTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVVVETN 304
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
FR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITKESLY AF+NGITAEQIISFL+QNA
Sbjct: 305 FRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIISFLKQNA 364
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
HPRVAD+IP VPENV DQIRLWE+D NRV+M +H YE+FPS+D+FE CD ARD LL
Sbjct: 365 HPRVADKIPVVPENVTDQIRLWETDRNRVDMVLSHVYEDFPSKDMFEQCCDLARDNGFLL 424
Query: 257 WEDSKKMRLVVNAEIHMHMREFLRGQ 282
WEDSKKMRL+V E H MREFLR Q
Sbjct: 425 WEDSKKMRLIVRVEFHQEMREFLRRQ 450
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 193/303 (63%), Positives = 230/303 (75%), Gaps = 26/303 (8%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERP----TNFSSSMMKVF------ 50
+PS +TARLPTL +LE++A+ QWE + + E P F +M+
Sbjct: 125 IPSSVTARLPTLAELESFALEQWEVRMTKAYVCIDGEAPRLTENGFQFLLMETNAQLWYI 184
Query: 51 ---------QRGL----LIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVK 97
+RG+ LI S L L F G EAY+LNTL+++QR+ I+D A+LGLVK
Sbjct: 185 MREYISSAEERGVDPTELI-SFLLELSFHTLG--EAYSLNTLTDVQRNAIRDLAELGLVK 241
Query: 98 LQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSK 157
LQQGRK+SWFIPTKLATNLS SL+DSS+ KEGFVVVETNFRMYAYSTS+LHCEILRLFS+
Sbjct: 242 LQQGRKDSWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSR 301
Query: 158 IEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRL 217
+EYQLPNLIVG+ITKESLY AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRL
Sbjct: 302 VEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRL 361
Query: 218 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMRE 277
WE+D NRV+MT +H YE+FPS+D+F+ CDYARD LLWED+KKMRL+V E H MRE
Sbjct: 362 WETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMRE 421
Query: 278 FLR 280
FLR
Sbjct: 422 FLR 424
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 303 bits (776), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 169/341 (49%), Positives = 209/341 (61%), Gaps = 91/341 (26%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWEC---------------------------FLL----- 28
+PS +TARLPTL +LE++A+ QWE FL
Sbjct: 125 IPSSVTARLPTLAELESFALEQWEVRMTKAYVCISYCLNATNVHSPSKGTHSFLYGKIVL 184
Query: 29 -----QLISSAQAER-----PTNFS--SSMMKVFQRGLLIQSILRS-------------- 62
QLISS + ++ NFS SS K+ + + I+R
Sbjct: 185 LAAIDQLISSRERDKFQLIHDENFSARSSEFKLMETNAQLWYIMREYISSAEERGVDPTE 244
Query: 63 -LKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
+ FL + + EAY+LNTL+++QR+ I+D A+LGLVKLQQ
Sbjct: 245 LISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQ----------------- 287
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
GFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY
Sbjct: 288 -----------GFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYG 336
Query: 178 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FP
Sbjct: 337 AFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFP 396
Query: 238 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
S+D+F+ CDYARD LLWED+KKMRL+V E H M ++
Sbjct: 397 SKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMHDY 437
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 299 bits (766), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 147/223 (65%), Positives = 169/223 (75%), Gaps = 30/223 (13%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S L L F G EAY+LNTL+++QR+ I+D A+LGLVKLQQ
Sbjct: 275 SFLLELSFHTLG--EAYSLNTLTDVQRNAIRDLAELGLVKLQQ----------------- 315
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
GFVVVETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITKESLY
Sbjct: 316 -----------GFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITKESLYG 364
Query: 178 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
AFENGITAEQIISFLQQNAHPRVAD+IP+VPENV DQIRLWE+D NRV+MT +H YE+FP
Sbjct: 365 AFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFP 424
Query: 238 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
S+D+F+ CDYARD LLWED+KKMRL+V E H MREFLR
Sbjct: 425 SKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 467
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWE 24
+PS +TARLPTL +LE++A+ QWE
Sbjct: 125 IPSSVTARLPTLAELESFALEQWE 148
>gi|414584750|tpg|DAA35321.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 386
Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/261 (60%), Positives = 187/261 (71%), Gaps = 48/261 (18%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLL----- 55
+P +T RLPT DLEAYA+ QWECFLLQLI+S+Q E+ ++FSSSMMK FQRGLL
Sbjct: 125 LPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFSSSMMKTFQRGLLSSRDG 184
Query: 56 -----------------------------------------IQSILRSLKFLCQGILEAY 74
+ S L L F G AY
Sbjct: 185 EASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLG--AAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE 134
+LNTL+++QR I+D A+LGLVK QQGRK+SWFIPT+LATNLS SL+DSS+ KEGFVVVE
Sbjct: 243 SLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQLATNLSASLSDSSSNKEGFVVVE 302
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TKES+Y AFENGITAEQIISFL+Q
Sbjct: 303 TNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFLRQ 362
Query: 195 NAHPRVADRIPSVPENVCDQI 215
NAHPRVAD+IP+VPENV DQ+
Sbjct: 363 NAHPRVADKIPAVPENVTDQV 383
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 208/328 (63%), Gaps = 52/328 (15%)
Query: 5 ITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSS-MMKVFQR-GLL------- 55
+ AR+P DLE YA+ QWE LLQL+ A A+ P + ++KVFQR GLL
Sbjct: 130 VAARVPNSADLENYAMKQWESVLLQLVDCA-ADGPAGPKNPFIIKVFQRSGLLTPENESP 188
Query: 56 --------------------------------------IQSILRSLKFLCQGILEAYNLN 77
+ L L F G EAY++N
Sbjct: 189 SLTDLGFQFLLMDTNSQLWQLVREYVTSSEDRGTDSGELVGFLLELGFHLVG--EAYSVN 246
Query: 78 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS--ARKEGFVVVET 135
+LS + ++ + A LGLVKLQQG KESW+IPTKLA+NLS SL++S+ EGFVVVET
Sbjct: 247 SLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSASLSESTDWQSSEGFVVVET 306
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
NF++YAY++SKL EILR F+++EYQLPNL+V +TKES+ A +GI+AEQIISFL+++
Sbjct: 307 NFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVNKALGSGISAEQIISFLRKH 366
Query: 196 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
AHP VA +IP VPE V DQ+RLWE+D NRV+ PA++Y++FP+ ++EA +ARD GL
Sbjct: 367 AHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDFPTMAIYEAVVAHARDLGGL 426
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLRGQN 283
L+ED+ RL+V +++H MR+++R Q+
Sbjct: 427 LFEDASAKRLIVRSDLHEDMRQYIRKQS 454
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 143/247 (57%), Positives = 169/247 (68%), Gaps = 26/247 (10%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S L L F G EAYN+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLS
Sbjct: 11 SFLLELSFHVTG--EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLS 68
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV--------GA 169
MSL+D+S+RK+GFVVVETNFR+YAYS+SKLHCEILRLFS+ L + ++ G
Sbjct: 69 MSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRYASMLFDCLLCICYSSQKGT 128
Query: 170 ITKESL-----YNAFENGITAEQIISFLQQNAHP-----------RVADRIPSVPENVCD 213
+ SL F G S + A P +A++IP +
Sbjct: 129 LLDVSLIMYECLRTFSLGKIIFWFFSSVSTVATPCHGYLVIFTISCLAEKIPCLQFTNMS 188
Query: 214 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
QIRLWE+DLNRVE P+H Y+EFPSRDVFEAACD+AR+ GLLWEDSKKMRLVV AEIH+
Sbjct: 189 QIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHL 248
Query: 274 HMREFLR 280
HMRE+LR
Sbjct: 249 HMREYLR 255
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/329 (42%), Positives = 210/329 (63%), Gaps = 45/329 (13%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSS-MMKVFQRGLLIQS- 58
+P I R+P+ ++L+ YA +WE + L++ A + P+ ++ ++++FQ+ L+ S
Sbjct: 129 LPPDIAVRMPSAKELDDYATEKWEAWFSSLVNFASPDGPSASTNGFIVQLFQKADLLTSG 188
Query: 59 -----------------------ILRS---------------LKFLCQ----GILEAYNL 76
++R ++FL + + E Y++
Sbjct: 189 QDPKITPAGFQFLLLDRNSQLWRVIREYVQYAEARQIDTGELIRFLLEIGFYSVGEPYSM 248
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-RKEGFVVVET 135
++L QR+ ++ A LG+++LQ+G K+ WFIPT+LAT LS SL++SSA + EGF++VET
Sbjct: 249 DSLPNSQRNFAEELAMLGVLQLQKGMKDRWFIPTRLATGLSASLSESSAWQTEGFIMVET 308
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
NFR+YAY++SKLH E L +F + EY LPN++VG+ITKES+ AF +GI+A+QII FLQQ+
Sbjct: 309 NFRVYAYTSSKLHIETLHVFVRTEYVLPNILVGSITKESVNGAFASGISADQIIKFLQQH 368
Query: 196 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
AHP VA ++PSVPE VCDQIRLWESD RV+ PA+ YE FPS V+E+ +ARDR+GL
Sbjct: 369 AHPFVAQKVPSVPETVCDQIRLWESDRVRVQYLPAYCYEGFPSTSVYESVVAHARDRNGL 428
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LWED+ + +VV E H +R FL+ NK
Sbjct: 429 LWEDANRKMIVVGGEHHEAIRAFLQNINK 457
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 152/223 (68%), Gaps = 45/223 (20%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S L L F G EAYN+NTL+E QR+ IKD DLGLVKLQQGRKESWFIPTKLATNLS
Sbjct: 58 SFLLELSFHVTG--EAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKLATNLS 115
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
MSL+D+S+RK+GFVVVETNFR+YAYS+SKLHCEILRLFS+
Sbjct: 116 MSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSR-------------------- 155
Query: 178 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
+S + H + IRLWE+DLNRVE P+H Y+EFP
Sbjct: 156 ---------SSVSTVATPCHGYL--------------IRLWETDLNRVETMPSHLYDEFP 192
Query: 238 SRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
SRDVFEAACD+AR+ GLLWEDSKKMRLVV AEIH+HMRE+LR
Sbjct: 193 SRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 235
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 165/322 (51%), Gaps = 54/322 (16%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQG 69
T+E L+AYA+ +WE L ++SS Q PT S ++ + QR GL+ Q+ +L+ G
Sbjct: 141 TVETLDAYALERWETILHYMVSSGQGSLPTKPSQGVLYLLQRSGLMTQNHGSALQITSAG 200
Query: 70 --------------------------------------------ILEAYNLNTLSEIQRS 85
+ Y+ LSE Q++
Sbjct: 201 FQFLLHTPHDQLWDLLLQYLHMAEERQMDLVEVLSFLFMLSTMDLGREYSTEGLSETQKA 260
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETNF 137
M++D D GLV Q+ F PT+LAT L+ S T + +GF+V+ETN+
Sbjct: 261 MLEDLRDYGLV-WQRKATSKRFSPTRLATTLTSSCPPLPTSTGTSGGPQSQGFIVLETNY 319
Query: 138 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 197
R+YAY+ L +L LF ++Y+ PNL+VG +T+ES+ A NGI+AEQIIS+L +AH
Sbjct: 320 RIYAYTDKPLQTAVLNLFITMKYRFPNLVVGMLTRESVKKALSNGISAEQIISYLTTHAH 379
Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 257
P++ P +P V DQIRLWE + NR++ + Y++F S +E +YA+ +LW
Sbjct: 380 PQMRKNNPLLPVTVQDQIRLWELERNRLKSEEGYLYKDFGSHADYEYVLNYAKQLDVVLW 439
Query: 258 EDSKKMRLVVNAEIHMHMREFL 279
E++ + + + H ++R F+
Sbjct: 440 ENTSRRCFFGSLDGHTNIRGFI 461
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 147/226 (65%), Gaps = 6/226 (2%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L L FL G E Y ++ L+ + +++D DLG++ ++ R W PT+LA
Sbjct: 71 VLSFLFRLSFLTVG--EGYQMDDLAFSESGLLQDLQDLGII-YRKHRDSKWLYPTQLAIG 127
Query: 116 LSMSLTDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
LS T+++ R +EG+++V T++R+YAY++S + +L LF++IEYQLPN+++G + +E+
Sbjct: 128 LSS--TEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLREN 185
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
+ A + GI+A QI+ FL+ NAHP++ P +PE++ DQ+RLWE++ R+ ++P ++Y+
Sbjct: 186 IRQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSPGYFYD 245
Query: 235 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+F S F+ A YARD LL+ D+ K L V + H +R +++
Sbjct: 246 DFASLAAFKKAEKYARDVGALLYSDAAKRFLFVTEQGHQLLRRYVK 291
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 135/227 (59%), Gaps = 9/227 (3%)
Query: 63 LKFLCQ-GILEA---YNLNTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNLS 117
L FL Q G E + L+ L + QR + D A LGL+ + S W PT+LA L+
Sbjct: 222 LNFLLQLGFREVGSPFALSGLDDSQRHIAADMAQLGLLMPFTAKDGSVWLAPTRLALALA 281
Query: 118 MSLTDSSAR--KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
+ + +GFVVVETN+R+YAY++S L +LRLF++ E LPNL VG +T+ES+
Sbjct: 282 GGSSGQAQHDVTDGFVVVETNYRVYAYTSSLLQTALLRLFTRCECILPNLFVGVLTRESV 341
Query: 176 YNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEE 235
A G++A+QI+ +L+Q+AHP VA R P VPE V DQ+RLW++D RV A Y++
Sbjct: 342 TGALACGLSADQIVLYLRQHAHPHVASRTPVVPEVVADQVRLWQADTMRVRHNRAVLYDD 401
Query: 236 FPSRDVFEAACDYARDRSGLLWEDSKK--MRLVVNAEIHMHMREFLR 280
FPS VF+ + AR LWED K RL V H MRE+++
Sbjct: 402 FPSAQVFQLSAQKARTLGVWLWEDPKAGMGRLAVQEAGHDAMREYIK 448
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 170/327 (51%), Gaps = 58/327 (17%)
Query: 13 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRSLKFL 66
E L+ Y+ +WE LL L+ +A AE FS ++ ++ + LI+ +FL
Sbjct: 204 EFLQEYSKRKWENVLLYLVGTA-AESEQTFSGNVNELLKYSQLIKKSDTVRITNEGFQFL 262
Query: 67 CQ----------------------------------GILEA---YNLNTLSEIQRSMIKD 89
Q G L+ Y+ L+ Q+S++ D
Sbjct: 263 LQETKVQVWKLLKHYLETSGQRNQVKNEILNFIFELGFLDVGKEYSSKDLTSTQKSLLVD 322
Query: 90 FADLGLVKLQQGRKES----WFIPTKLATNLSMSLTDS----------SARKEGFVVVET 135
F DLG++ L + +K+ +F PT LA +L++S++ S ++ G+++VET
Sbjct: 323 FNDLGIIYLHRDKKKKIKDKYFFPTPLAKSLTVSMSTSYDLISSFGSHNSINNGYIIVET 382
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF EY+LPN++VG IT+ ++ A +NGI+A QI+ FL+ N
Sbjct: 383 NYRVYAYTNSPLQIALLSLFIFPEYRLPNMVVGLITRSTIREALKNGISAHQILQFLRLN 442
Query: 196 AHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
AHP++ + P +P+ V DQI LWE + NRV T + Y++F + A DYAR + L
Sbjct: 443 AHPQMRLKKPVIPDTVSDQILLWEKERNRVIKTTSVVYDKFTNVSELNATVDYARRQGAL 502
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLRGQ 282
LW +KM +V E H M+EF+ Q
Sbjct: 503 LWHSEEKMMMVCKREFHGLMKEFISSQ 529
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 165/321 (51%), Gaps = 53/321 (16%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRG----------------- 53
TLE L+AYA+ +WE L ++SS + P S ++ + +R
Sbjct: 136 TLEMLDAYAVERWETILHYMVSSGTGQMPARPSQGVLFLLERSGLMSGNGGNMKITSFGF 195
Query: 54 -------------LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQRSM 86
LL+Q ++ L FL + Y+ L E Q++M
Sbjct: 196 QFLLHSPHAQLWELLLQYLHMAEERQMDLIEVLGFLFMLSTMELGRGYSTENLGETQKAM 255
Query: 87 IKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETNFR 138
++D D GL+ Q+ F PT+LAT L+ SL ++A+ +GF+++ETN+R
Sbjct: 256 LEDLRDYGLI-WQKKASSRRFYPTRLATTLTSSLPPLPTSGSGGANAQAQGFIILETNYR 314
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ + L +L LF ++Y+ PNL+VG++T++S+ A NGITA+QII +L +AHP
Sbjct: 315 IYAYTDNPLQTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGITADQIIKYLTTHAHP 374
Query: 199 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
++ P +P V DQIRLWE + NR++ + Y F S+ +E YA+ +LWE
Sbjct: 375 QMRKNDPLIPVTVQDQIRLWELERNRLKSQEGYLYTAFASQADYEFVLKYAKQLGVVLWE 434
Query: 259 DSKKMRLVVNAEIHMHMREFL 279
++ K + E H ++R F+
Sbjct: 435 NAAKRCFFGSLEGHANIRGFI 455
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 164/314 (52%), Gaps = 48/314 (15%)
Query: 13 EDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRG------------------- 53
+ L+A+A+ +WE L ++SS A P S+ ++ + QR
Sbjct: 147 DGLDAFALERWETILHFMVSSGTAHNPPRPSAGVLFLLQRSGLMGGGGNPQITSAGFQFL 206
Query: 54 ----------LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQRSMIKD 89
LL+Q ++ L F+ + Y+ LS+ Q++M++D
Sbjct: 207 LHEPHAQLWELLLQYLRMAEERQMDLVEVLSFIFMLSTTELGREYSTENLSDTQKAMLED 266
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMS----LTDSSARKEGFVVVETNFRMYAYSTS 145
D GL+ QQ F PT+LAT L+ S T S EGF+V+ETN+R+YAY+ +
Sbjct: 267 LRDYGLI-WQQKPTSKRFSPTRLATTLTSSSPPLPTSGSGVSEGFIVLETNYRLYAYTDN 325
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 205
L +L LF+ + + PNL+VG IT+ES+ A ++GI+AEQIIS+L +AHP++ P
Sbjct: 326 PLQTAVLALFTTLRSRFPNLVVGQITRESVKRALQSGISAEQIISYLSTHAHPQMRKNNP 385
Query: 206 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 265
+P V DQIRLWE + NR++ Y EF S+ +E +YAR+ + +LWE+ K
Sbjct: 386 LIPVTVQDQIRLWELEKNRLKSQEGFLYTEFASQGDYEYVLNYARELNVVLWENPVKRCF 445
Query: 266 VVNAEIHMHMREFL 279
+ E H ++R F+
Sbjct: 446 FGSMEGHANIRGFI 459
>gi|449521313|ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
partial [Cucumis sativus]
Length = 296
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 95/173 (54%), Positives = 107/173 (61%), Gaps = 48/173 (27%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--- 57
MPS IT RLP+LEDLEAYA+ QWECFLLQLI+S QAE+P+N SSS+MKVFQ+GLL Q
Sbjct: 125 MPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNISSSVMKVFQKGLLSQRDK 184
Query: 58 -------------------------------------------SILRSLKFLCQGILEAY 74
S L L F G EAY
Sbjct: 185 EAPRLTESGFQFLLMETNAQLWYIIREYISNAEERGVDPADLISFLLELSFHVTG--EAY 242
Query: 75 NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK 127
+++TLS+ QR IKD ADLGLVKLQQGRKESWFIPTKLATNLSMSL DSS+RK
Sbjct: 243 DIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKLATNLSMSLADSSSRK 295
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 146/226 (64%), Gaps = 6/226 (2%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L L FL G E Y ++ L+ + +++D DLG++ ++ + W PT+LA
Sbjct: 230 VLSFLFRLSFLTVG--EGYQMDDLAFSESGLLQDLQDLGII-YRKHKDSKWLYPTQLAIG 286
Query: 116 LSMSLTDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
LS T+++ R +EG+++V T++R+YAY++S + +L LF++IEYQLPN+++G + +E+
Sbjct: 287 LSS--TEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLREN 344
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
+ A + GI+A QI+ FL+ NAHP++ P +PE++ DQ+RLWE++ R+ ++ ++Y+
Sbjct: 345 IRQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSSGYFYD 404
Query: 235 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+F S F+ A YARD L++ D+ K L V+ H +R +++
Sbjct: 405 DFASLAAFKKAEKYARDVGALIYSDATKRFLFVSEPGHQLLRRYVK 450
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 8/208 (3%)
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-------RKEG 129
LS+ ++ ++ D LGL+ + +K+ +++PT LA+ LS T EG
Sbjct: 275 GVLSDTEQDVVLDLTHLGLLYTFEVKKKFYYVPTLLASGLSGGFTGDDGDTKAAAAAAEG 334
Query: 130 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 189
++VETN+R+YAY++S + EILRLF++ +Y+LPNL VG +T+ES+ NA G+ AEQI+
Sbjct: 335 HIIVETNYRVYAYTSSAVEMEILRLFTRADYRLPNLYVGMLTRESVQNALRAGVDAEQIV 394
Query: 190 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA-CDY 248
+++ +AH +V + PSVP VCDQIRLW D+ R+E Y +FP F A
Sbjct: 395 GYIRAHAHKQVRRKKPSVPSTVCDQIRLWARDMERMEAEECVLYCDFPQAGTFYGAVVSE 454
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMR 276
A R LLW D RL V A H M+
Sbjct: 455 AEKRGALLWRDDASRRLTVRASAHDEMK 482
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/337 (31%), Positives = 166/337 (49%), Gaps = 61/337 (18%)
Query: 3 SGITARLPTLEDLEAYAIGQWECFLLQLISSAQAE----------------RPTNFSSSM 46
S + + LP+ EDLE+YA G+WE LL L ++ A R
Sbjct: 135 SDLGSALPSPEDLESYAKGRWEALLLTLTGASDAFAAAGANAADLDVGALFRAAGLIGDA 194
Query: 47 MKVFQRGLL-----------------------IQSILRSLKFLCQGILEAYNLNTLSEIQ 83
K + G+ + S L L F G+ AY+ + L Q
Sbjct: 195 SKGEKEGVTEAGFKFLLSTAREQIWALLDAPAVLSFLLKLTFQAPGV--AYSTDGLPASQ 252
Query: 84 RSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEG-------------- 129
+ +++D A LGL+ + +++PT L++ LS G
Sbjct: 253 KGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDDDGDGGVGGGGKKSGDGGGV 312
Query: 130 ----FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 185
++VETNFR+YAY++S + EILRLF++ +Y+LPNL VG +T+E++ A GI+A
Sbjct: 313 GARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLYVGMMTREAVVTALRGGISA 372
Query: 186 EQIISFLQQNAHPRVADRI-PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPS-RDVFE 243
EQI+S+L+++AHP+ P++P VCDQIRLW D NRV+ TP Y +FP+ +FE
Sbjct: 373 EQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRVKYTPCVLYCDFPTGTGMFE 432
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ A++R LW D ++L V E H M++ +
Sbjct: 433 KVAEIAKERGLYLWGDPVGLKLAVREEGHESMKDVFK 469
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 151/261 (57%), Gaps = 25/261 (9%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQ----GILEAYNLNTLSE 81
F+LQ + ++QA RGL I+ +L FL Q + + Y+ ++E
Sbjct: 220 FMLQYLETSQA---------------RGL---DIVDALSFLFQLSFSTLGKDYSSEGMTE 261
Query: 82 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRM 139
Q ++ +LGLV Q+ RK + PT+LA NL+ ++ + K+GF+VVETNFR+
Sbjct: 262 QQLHFLQHLRELGLV-FQRKRKSMRYYPTRLAINLASGVSSMAKDDHKDGFIVVETNFRV 320
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAY+ S L EIL LF + Y+ PNL V A+T+ES+ A NGITAEQI+SFL+ +AHP
Sbjct: 321 YAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITAEQILSFLRTHAHPN 380
Query: 200 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
+ + P VP + DQ+RLWE + +R+ T Y EF S FE DYA+D L+W+
Sbjct: 381 MRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDS 440
Query: 260 SKKMRLVVNAEIHMHMREFLR 280
+ + ++V+ H ++++ +
Sbjct: 441 TARRIMIVSPAGHDSVKKYWK 461
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 137/231 (59%), Gaps = 23/231 (9%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------ 119
E Y+++TL++ Q M++D D G+V Q+ + + PT+LAT L+
Sbjct: 49 ENYSVDTLTQTQLQMLEDLRDYGIV-YQRKKHSKRYYPTRLATTLTSGKSALATVAGKYN 107
Query: 120 ----------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
TD+ + +GF+++ETN+++YAY+ S L +L LF +++ + N++ G
Sbjct: 108 HMMQETNIDDTTDTESVDQGFIILETNYKLYAYTDSPLQIAVLNLFVQLQSRFRNMVTGV 167
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 229
IT++S+ NA GITAEQII +LQ +AHP++ P +P V DQIRLWE + NR++ TP
Sbjct: 168 ITRDSIRNALMKGITAEQIIYYLQSHAHPQMRKETPVLPLTVVDQIRLWEMERNRLKPTP 227
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
++ Y EF + F+AA YARD LLW +++K + + H +++ F++
Sbjct: 228 SYLYHEFNVQADFDAAEKYARDLGVLLWSNNQKRTMAITEAGHENVKGFVK 278
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 134/217 (61%), Gaps = 8/217 (3%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTDS---- 123
+ Y+ LSE Q M++DF D GL+ + + F PT+LAT L S++ T S
Sbjct: 245 QEYSTENLSETQDVMLQDFLDYGLIYRRNPDDHTRFYPTRLATTLTSTSSLAFTSSKHEK 304
Query: 124 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 183
+A EGF+++ETN+R+YAY+ + L +L LF + + NL++G +T+ES+ A NGI
Sbjct: 305 AASSEGFIILETNYRVYAYTENPLQIAVLNLFVALHSRFENLVIGRLTRESIKAALANGI 364
Query: 184 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
TA+QIIS+L +AHP + P +P V DQIRLW+ + NR++ + YE+F S+ F+
Sbjct: 365 TADQIISYLTVHAHPMMHKNNPVLPVTVQDQIRLWQLEKNRLKSENGYLYEDFNSQGDFD 424
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+YA+ +LWE+ +K ++ V + H ++REF+R
Sbjct: 425 LVLNYAKQLDVVLWENREKRKMFVREDGHENVREFIR 461
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/216 (38%), Positives = 130/216 (60%), Gaps = 9/216 (4%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDS 123
++Y+ LS Q++M++D D GL++ Q+ F PT+LAT L+ S T
Sbjct: 284 QSYSTENLSATQKAMLEDLRDYGLIR-QRTATSRKFSPTRLATTLTSSSPPLPTSAGTGD 342
Query: 124 SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 183
+ +GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG IT++S+ A NGI
Sbjct: 343 GSHVQGFIVLETNYRLYAYTDNPLQIAVLNLFVTLKYRFPNLVVGQITRDSVKKALANGI 402
Query: 184 TAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
TA+QIIS+L +AHP++ P +P V DQIRLWE + NRV+ + Y F S +E
Sbjct: 403 TADQIISYLITHAHPQMRKNKPLLPVTVQDQIRLWELERNRVKSQEGYLYTAFASHADYE 462
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
DYA+ +LWE+ K + E HM++R ++
Sbjct: 463 WVLDYAKKLGVVLWENPSKRCFFGSVEGHMNIRGYI 498
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 169/328 (51%), Gaps = 55/328 (16%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS---------SSMMKVFQRG------- 53
P+++ L+++A+ +WE L ++SS ++P S SS+M F G
Sbjct: 138 PSIKTLDSFALERWETILHYMVSSGTGQQPAKPSQGVLFLLQRSSLMSSFHGGPLQITSS 197
Query: 54 ---------------LLIQ----------SILRSLKFL----CQGILEAYNLNTLSEIQR 84
LL+Q ++ L FL + Y LS Q
Sbjct: 198 GFQFLLHSPHAQLWDLLLQYLHLAQERQMDLVEVLGFLFMLSTMELGREYLTENLSTTQG 257
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-------LTDSSARKEGFVVVETNF 137
+++D D GL+ Q K F PT+L T L+ S ++ SS +GF+V+ETN+
Sbjct: 258 VLLEDLRDYGLI-WQSKPKSRRFSPTRLGTTLTSSSPPLPTTISASSGPLDGFIVLETNY 316
Query: 138 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 197
R+YAY+ + L +L LF ++Y+ PNL+VG IT++S+ A NGITA+QIIS+L +AH
Sbjct: 317 RIYAYTDNPLQTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMNGITADQIISYLITHAH 376
Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 257
P++ P +P V DQIRLWE + NR++ + + Y F S+ ++ +YA+ +LW
Sbjct: 377 PQMRKNNPLLPVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNYAKQLDVVLW 436
Query: 258 EDSKKMRLVVNAEIHMHMREFL--RGQN 283
E++ K + E H+ ++EF+ R QN
Sbjct: 437 ENAAKRCFFGSLEGHLRIKEFIERRTQN 464
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 145/235 (61%), Gaps = 10/235 (4%)
Query: 52 RGLLIQSILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWF 107
RGL +++ +L+FL Q + + Y +S+ + ++ +LGLV Q+ RK F
Sbjct: 220 RGL---NLVEALQFLFQISFSTLGKDYPTEGMSDSMQQFLQHLRELGLVN-QRKRKSGRF 275
Query: 108 IPTKLATNLSMSLTD--SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
PT+LA +L+ ++D KEG++VVE+N+R+YAY+ S+L ++ LFS+I Y+ PN+
Sbjct: 276 YPTRLAIHLASGISDVEKDFHKEGYLVVESNYRIYAYTDSELQVALIGLFSEILYRFPNM 335
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 225
+V +T++S+ A GITA+QI+ FL+ NAHP+ R+P VP + DQIRLWE + +R+
Sbjct: 336 VVANLTRDSVQEAVVRGITADQILHFLRVNAHPKALHRVPIVPPTISDQIRLWEMERDRL 395
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
T Y +F S+ FE +YA+D LLWE++ K +VV+ H ++ + +
Sbjct: 396 TFTEGVLYNQFLSQPDFEMLRNYAKDLGVLLWENNPKRLMVVSKAGHDDVKRYWK 450
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 166/323 (51%), Gaps = 54/323 (16%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS------- 62
P++E L++YA+ +WE L ++SS + PT S +++ + +R L+ S+ +
Sbjct: 83 PSIETLDSYALERWETILYYMVSSGNGQYPTKPSDAVLYLLKRSGLMTSVRGAALQITSS 142
Query: 63 -LKFLCQ----------------------------GIL---------EAYNLNTLSEIQR 84
+FL G L Y+ + LS Q+
Sbjct: 143 GFQFLLHPPHEQLWELLLQYLHLTEERQMDLVDVLGFLLMLSTMELGREYSTDGLSPTQK 202
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS--------LTDSSARKEGFVVVETN 136
+M++D D GL+ Q+ F PT+LAT L+ S + ++ +GF+V+ETN
Sbjct: 203 AMLEDLRDYGLL-WQRSATSQRFSPTRLATTLTASSNPLPTSSSASADSQSQGFIVLETN 261
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
+R+YAY+ + L +L LF ++ + PNL++GA+T+ES+ A NGITA+QIIS+L +A
Sbjct: 262 YRVYAYTDNPLQIAVLNLFVTMKSRFPNLVIGAVTRESVKKALANGITADQIISYLTAHA 321
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
HP++ P +P V DQIRLWE + NRV+ + Y F S+ +E +YA+ ++
Sbjct: 322 HPQMRRYKPLLPVTVQDQIRLWELEKNRVKSQEGYLYTAFASQADYEYVLNYAKQLDVVI 381
Query: 257 WEDSKKMRLVVNAEIHMHMREFL 279
WE + + E H ++R F+
Sbjct: 382 WESPTRRCFFGSLEGHSNIRGFI 404
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 138/232 (59%), Gaps = 16/232 (6%)
Query: 60 LRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS 119
L L FL G ++Y L L+ QR M+ D + GLV ++ K F PT+LA +L+
Sbjct: 223 LFKLSFLTLG--KSYYLADLNPNQRDMLFDLKEFGLVYVR-SEKSDVFYPTRLAISLATG 279
Query: 120 LT-----------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 168
T +S + +G++++ETNFR+YAY+ S L ++ LF K+ Y+LPNL VG
Sbjct: 280 RTVSLMNDLAQEISTSQKDQGYLILETNFRIYAYTQSSLQISLISLFVKMLYRLPNLAVG 339
Query: 169 AITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMT 228
+T+ES+ +A +GITA+QI+ F++QNAHP + I PE V +QIRLWES+ NR+
Sbjct: 340 ILTRESVRSALLHGITADQIVDFVKQNAHPNMV--ISGYPEVVFEQIRLWESERNRITYK 397
Query: 229 PAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
A ++ FP+ + F +A+D+ L+W D K LVVN E +R +++
Sbjct: 398 KAVLFDSFPNAESFSKTVTFAKDQYFLVWFDETKKMLVVNDEGSEPIRNYIK 449
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 163/323 (50%), Gaps = 54/323 (16%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQ 68
P ++ L+ YA+ +WE L ++SS E P+ S ++ + +R GL+ + +L+
Sbjct: 147 PEIDALDGYALERWETILYYMVSSGTGEFPSQPSKGVLYLLERSGLMARVHSGALQITSG 206
Query: 69 G--------------------------------------------ILEAYNLNTLSEIQR 84
G + + Y+ LS Q+
Sbjct: 207 GFQFLLHPPHVQLWELLLQYLQMAEERQMDLVEVISFLLMLSTTELGKNYSTENLSPTQK 266
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETN 136
+M+ D D GL+K Q+ F PT+LAT L+ S + + +GF+V+ETN
Sbjct: 267 TMLDDLRDYGLIK-QRTPTSRRFSPTRLATTLTSSSPPLPTSAGSGDGSHAQGFIVLETN 325
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
+R+YAY+ + L +L LF ++ + PNL++GAIT++S+ A +GITA+QIIS+L +A
Sbjct: 326 YRLYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRDSVKKALASGITADQIISYLVTHA 385
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
HP++ P +P V DQIRLWE + NR++ + Y F S+ +E +YA+ +L
Sbjct: 386 HPQMRKNQPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQLDVVL 445
Query: 257 WEDSKKMRLVVNAEIHMHMREFL 279
WE++ + + E H ++R F+
Sbjct: 446 WENASRRCFFGSVEGHANIRGFI 468
>gi|392594388|gb|EIW83712.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 486
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 164/339 (48%), Gaps = 70/339 (20%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQ 68
P++E L+ YA+ +WE L ++SS Q + PT + ++ + QR GL+ +L+
Sbjct: 141 PSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSS 200
Query: 69 G--------------------------------------------ILEAYNLNTLSEIQR 84
G + Y+ LSE Q+
Sbjct: 201 GFQFLLYSPHDQLWDLLLQYLHMVEERQMDLVEVLSFFFMLSTMELGREYSTEPLSETQK 260
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTDSSARK-------------- 127
+M++D D GLV Q+ F PT+LAT L S SL + +
Sbjct: 261 AMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPGSAPGASSVANS 319
Query: 128 -------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 180
GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG +T+ES+ A
Sbjct: 320 TGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALG 379
Query: 181 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 240
NGI+AEQ+IS+L +AHP++ P +P V DQ+RLWE + NR++ Y++F ++
Sbjct: 380 NGISAEQVISYLTAHAHPQMRKNNPLLPVTVQDQVRLWELERNRLKSDDGFLYKDFATQA 439
Query: 241 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+E YA++ +LWE++ K + H ++R F+
Sbjct: 440 DYEYVLAYAKELDVVLWENTSKRCFFGTLDGHTNVRGFI 478
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/237 (37%), Positives = 141/237 (59%), Gaps = 14/237 (5%)
Query: 57 QSILRSLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKL 112
Q ++ ++ FL G LE AY + LS+IQ +++D AD GLV L + R F PT+L
Sbjct: 242 QDLVETIGFLFMLGSLELGRAYMTDNLSQIQHGVLRDLADYGLVYLPE-RNAPIFYPTRL 300
Query: 113 ATNLSMSL-----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 167
AT L+ S + S ++GF+V+ETN+++YAY+++ L +L LF+ ++ + N +
Sbjct: 301 ATTLTSSAPPLVSSRHSNEEKGFIVLETNYKLYAYTSNPLQIAVLGLFAHLKTRFANFVT 360
Query: 168 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS----VPENVCDQIRLWESDLN 223
G IT+ES+ NGITA QIIS+L AHP++ + S +P V DQIRLWE +
Sbjct: 361 GHITRESIRRGLANGITANQIISYLASRAHPQMRAQAGSDDKLLPITVVDQIRLWEHERR 420
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
R++ T + Y+EF S +E +YAR+ +L E K ++ V A+ H +REF++
Sbjct: 421 RIQTTEGYLYDEFSSTHDYELVVNYAREIGSVLLELPKARKVFVTADGHQQVREFIK 477
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 167/327 (51%), Gaps = 61/327 (18%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSI------LRSL 63
P++E L+AYA+ +WE L ++SS A RP S ++ + QR L+ SI + SL
Sbjct: 142 PSIEVLDAYALERWETILHYMVSSGIATRP---SQGVLFLLQRSGLMASIHGGSLQITSL 198
Query: 64 KF----------LCQGILE-----------------------------AYNLNTLSEIQR 84
F L + +L+ Y++ LS Q
Sbjct: 199 GFQFLLHSPHAQLWELLLQYLHMVEERQMDLVEVLSFLFMLSTMELGREYSVEHLSPTQT 258
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETN 136
+M++D D G++ Q+ F PT+LAT L+ S +SA +GF+++ETN
Sbjct: 259 AMLEDLRDYGII-WQRRATSKRFCPTRLATTLTSSSPPLPAAGGVSASAHGQGFIILETN 317
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE----QIISFL 192
+R+YAY+ + L +L LF ++ + PNL+VGAIT+ES+ A NGITA+ QIIS+L
Sbjct: 318 YRLYAYTDNPLQIAVLNLFVTLKSRYPNLVVGAITRESVKKALTNGITADQASRQIISYL 377
Query: 193 QQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 252
+AHP++ P +P V DQIRLWE + NR++ + Y F S+ +E +YA+
Sbjct: 378 TTHAHPQMRKNKPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQADYEYVLNYAKQL 437
Query: 253 SGLLWEDSKKMRLVVNAEIHMHMREFL 279
+LWE S + E H ++R F+
Sbjct: 438 GVVLWESSGRRCFFGTLEGHPNIRGFI 464
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 57/322 (17%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLK------ 64
++++L+ Y +WE L ++ S +P++ S++ Q GL+ S RSL+
Sbjct: 187 SIDELDRYGTEKWETILHYMVGSRLPTKPSHNILSLLG--QSGLMTSSDPRSLQSLKITS 244
Query: 65 ----FLCQ----------------------------------GILE---AYNLNTLSEIQ 83
FL + G LE Y+ + + Q
Sbjct: 245 KGFGFLLEDVNTQLWDILLQYLKMTEVNGLDVVDVLACLFMLGSLELGQEYSFSNWTPTQ 304
Query: 84 RSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL-----TDSSARKEGFVVVETNFR 138
+++D D GLV + + F PT+LAT L+ + + + + GF+V+ETN+R
Sbjct: 305 TQVLQDLVDYGLVLVSAPDR---FYPTRLATTLTSTAPPLVSAERAQEEHGFLVLETNYR 361
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+++ L +L LF + Y+ PNL+VGA+T+ES+ +A NGITA+Q+I +L +AHP
Sbjct: 362 IYAYTSNPLQIAVLNLFLSLRYRFPNLVVGAVTRESIKSALSNGITADQVIMYLHTHAHP 421
Query: 199 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
++ P +P V DQIRLWE + NR+ + YE+F S +++ Y+R +LWE
Sbjct: 422 QMRKLEPLLPPTVVDQIRLWELEKNRIRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWE 481
Query: 259 DSKKMRLVVNAEIHMHMREFLR 280
+ +L V + H+ +REF R
Sbjct: 482 HAGLRKLFVGYDGHLTLREFFR 503
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 104/337 (30%), Positives = 172/337 (51%), Gaps = 60/337 (17%)
Query: 2 PSGITARLP--TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQS 58
P +A LP T+ L+AYA+ +WE L ++SS + P S ++ + ++ GL+I+
Sbjct: 133 PVKRSAELPPVTVSALDAYAVERWETILHFMVSSGTDQSPATPSGAVCNLLRKSGLMIRL 192
Query: 59 ILRS----------LKFLCQ----------------------GILEA------------- 73
RS +FL G++E
Sbjct: 193 DPRSDSSMKITSRGFQFLLSSPHAQLWELLLHYLELAEERGLGLMEVVSFLFMLSTMELG 252
Query: 74 --YNLNTLSEIQRSMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTD------- 122
Y+ + L++ Q +++ + D GL+ + G + +F PT+LAT L SL +
Sbjct: 253 QEYSTDNLTKDQATVLGELLDYGLIYQRALPGMSKRFF-PTRLATTLMSSLPELPRTAGV 311
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
+SA GF+++ETN+R+YAY+ + L +L LF + + PNL+VG +T++S+ A NG
Sbjct: 312 ASATSGGFIILETNYRLYAYTDNPLQIAVLNLFVSFKSRFPNLVVGMVTRDSVKKALANG 371
Query: 183 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 242
ITAEQII++L +AHP++ P +P V DQ+RLWE + NRV+ Y +F S+ F
Sbjct: 372 ITAEQIITYLSAHAHPQMRKNNPLLPVTVQDQVRLWELEKNRVKAEEGFLYMDFTSQADF 431
Query: 243 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
E DYAR ++WE+ ++ A+ H ++R F+
Sbjct: 432 ELVLDYARKLGVVIWENGRQRMFFGKADGHNNIRTFI 468
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 13/236 (5%)
Query: 53 GLLIQSILRSLKFLCQGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 109
GL + +L L L G LE Y+ + + Q +++D D GLV + + F P
Sbjct: 68 GLDVVDVLACLFML--GSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYP 122
Query: 110 TKLATNLSMSL-----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
T+LAT L+ + + + + GF+V+ETN+R+YAY+++ L +L LF + Y+ PN
Sbjct: 123 TRLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPN 182
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
L+VGA+T+ES+ +A NGITA+Q+I +L +AHP++ P +P V DQIRLWE + NR
Sbjct: 183 LVVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNR 242
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ + YE+F S +++ Y+R +LWE + +L V + H+ +REF R
Sbjct: 243 IRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 298
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 133/214 (62%), Gaps = 8/214 (3%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE 128
Y+ L E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + +E
Sbjct: 277 YSTEELPETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQE 335
Query: 129 --GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
G++++ETN+R+YAY++++L +L LF I+ + PNL+VG+IT++S+ +A NGITAE
Sbjct: 336 ERGYIILETNYRLYAYTSNRLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAE 395
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QII++L +AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE
Sbjct: 396 QIITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVR 455
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+YA+ L+WED K R V+ ++ +R+++R
Sbjct: 456 NYAKQLGVLVWEDEGKRRFFVDEAGNVPVRDYIR 489
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 93/261 (35%), Positives = 152/261 (58%), Gaps = 17/261 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + SA++ R N + +FQ L F G + Y++ +S+ +
Sbjct: 208 FMLQYLKSAES-RGMNLVEILSFMFQ-----------LSFSTLG--KDYSVEGMSDSLLT 253
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NL+ ++ S + K+GF+VVETN+R+YAY+
Sbjct: 254 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGFIVVETNYRIYAYT 312
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PNL+V +T+E++ A NGITAEQII FL+ AHP + +
Sbjct: 313 DSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIHFLRTRAHPVMLQQ 372
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P++P + DQIRLWE + +R+ + Y +F S+ FE +YARD L++E+ K
Sbjct: 373 NPALPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYARDLGVLVFENPAKR 432
Query: 264 RLVVNAEIHMHMREFLRGQNK 284
+VV H ++ F + Q +
Sbjct: 433 VMVVTPGGHSDVKRFWKRQKQ 453
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/263 (35%), Positives = 151/263 (57%), Gaps = 23/263 (8%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILR---SLKFLCQGILEAYNLNTLSEI 82
F+LQ + SA++ RG+++ IL L F G + Y++ +S+
Sbjct: 208 FMLQYLKSAES---------------RGMILVEILSFMFQLSFSTLG--KDYSVEGMSDS 250
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMY 140
+ ++ + GLV Q+ RK + PT+LA NL+ ++ S + K+GF+VVETN+R+Y
Sbjct: 251 LLTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGFIVVETNYRIY 309
Query: 141 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 200
AY+ S+L ++ LFS++ Y+ PNL+V +T+E++ A NGITAEQII FL+ AHP +
Sbjct: 310 AYTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIHFLRTRAHPVM 369
Query: 201 ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 260
+ P +P + DQIRLWE + +R+ + Y +F S+ FE +YARD L++E+
Sbjct: 370 LQQNPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLRNYARDLGVLVFENP 429
Query: 261 KKMRLVVNAEIHMHMREFLRGQN 283
K +VV H ++ F + Q
Sbjct: 430 AKRVMVVTPGGHSDVKRFWKRQK 452
>gi|412992641|emb|CCO18621.1| predicted protein [Bathycoccus prasinos]
Length = 542
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 132/219 (60%), Gaps = 13/219 (5%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTDSSA-----R 126
Y+ LSE +R + + LG++ +W++PT L+ LS T SSA R
Sbjct: 324 YSKANLSEAERRVASHLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALAR 383
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
+G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +
Sbjct: 384 IDGHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPD 443
Query: 187 QIISFLQQNAHPR--VADRI--PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR-DV 241
QI+++LQ AHPR + R P+VP VCDQIRLW DL RV+ Y +FP + +
Sbjct: 444 QIVNYLQTRAHPRCTIGKRPNHPAVPPTVCDQIRLWARDLYRVKADDCVMYTDFPMQGNQ 503
Query: 242 FEAACDYARDRSG-LLWEDSKKMRLVVNAEIHMHMREFL 279
F+ A + AR+ +LW D K R V+A+ H ++ FL
Sbjct: 504 FQDAVNNARNVGAQILWMDENKRRFAVDADSHERLKVFL 542
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/221 (38%), Positives = 129/221 (58%), Gaps = 6/221 (2%)
Query: 63 LKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD 122
L+ QG A + L +R++ LGL+ G E W PT+LA L+
Sbjct: 233 LRLGLQGAAAAMAHSQLDSAERTIAAHMCQLGLLMPVPGANELWLHPTRLAAVLAGGGRA 292
Query: 123 SSAR---KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
A +EG+V+VE+NFR+YAY+TS + +LR+F + + LPNL VG IT+ES NA
Sbjct: 293 GEAAVAPEEGYVIVESNFRVYAYTTSAVQVAVLRVFVRCDALLPNLFVGTITRESATNAL 352
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
+ GI A+Q+++FL+Q+AHPR A + P+V V DQIRLW +L R++ A Y++F S+
Sbjct: 353 DTGIAADQVVAFLRQHAHPRAAAKTPTV---VTDQIRLWAQELKRLQEKNATLYDKFESK 409
Query: 240 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+++ A +AR + LL+ + +LVV + H M L+
Sbjct: 410 ELYVGAVAHARQLNALLYSCEDRRQLVVESAFHGLMVGHLK 450
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 135/205 (65%), Gaps = 8/205 (3%)
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--SLTDSSARK--EGFVVVETNFR 138
Q+ ++ +LG++ +++ RK+ F T L T+L+ ++ D+SA + G V+VETNFR
Sbjct: 255 QQELLNHLRELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGKVIVETNFR 313
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP
Sbjct: 314 VYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHP 373
Query: 199 R---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
+ + I +P V DQIRLWE + R+++ A+ Y F S D F+ CDYA++R L
Sbjct: 374 QCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGIL 433
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLR 280
LW ++++ ++VN E H ++R++ +
Sbjct: 434 LWANAQQKLVIVNEEGHEYVRQWYK 458
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 135/205 (65%), Gaps = 8/205 (3%)
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--SLTDSSARK--EGFVVVETNFR 138
Q+ ++ +LG++ +++ RK+ F T L T+L+ ++ D+SA + G V+VETNFR
Sbjct: 258 QQELLNHLRELGVIFIRK-RKDGVFFLTHLLTHLATNETIDDTSAERVSNGKVIVETNFR 316
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP
Sbjct: 317 VYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHP 376
Query: 199 R---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
+ + I +P V DQIRLWE + R+++ A+ Y F S D F+ CDYA++R L
Sbjct: 377 QCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDYAQERGIL 436
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLR 280
LW ++++ ++VN E H ++R++ +
Sbjct: 437 LWANAQQKLVIVNEEGHEYVRQWYK 461
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/214 (39%), Positives = 131/214 (61%), Gaps = 8/214 (3%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE 128
Y+ L E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + A +E
Sbjct: 276 YSTEELPETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAIPLLSSNGAEQE 334
Query: 129 --GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A NGITAE
Sbjct: 335 ERGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAE 394
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QII++L +AH ++ P +P V DQIRLWE + NRV + +F S+ FE
Sbjct: 395 QIITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVVQNLGSLFTDFTSQFDFEEVR 454
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+YA+ L+WED K R V+ + +R+++R
Sbjct: 455 NYAKQLGVLVWEDESKRRFFVDEAGNEPVRDYIR 488
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 167/321 (52%), Gaps = 52/321 (16%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFS---------SSMMKVFQRGLLIQS-- 58
P++ L+AYA+ +WE L ++SS +RPT S S +M L I S
Sbjct: 76 PSIAALDAYALERWETILHYMVSSGSGQRPTEPSPGVRFLLKTSGLMNEIHDALHISSAG 135
Query: 59 ---------------ILRSLKFLCQGILE------------------AYNLNTLSEIQRS 85
+L+ L+ Q ++ Y++ L++ Q +
Sbjct: 136 FQFLLHSPHEQLWHLLLQYLQLAEQRRMDLVDVLSFFFMLSTMELGREYSVQNLTKTQSA 195
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD-------SSARKEGFVVVETNFR 138
M++D D GL+ Q+ + F PT+L+T L+ S SS +EGF+++ETN+R
Sbjct: 196 MLEDLRDYGLI-WQRKQTSKRFSPTRLSTTLTSSSPPLPSTSGASSGPQEGFIILETNYR 254
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ + L +L LF+ ++Y+ PNL+VG+IT+ES+ A NGI+A+QIIS+L +AHP
Sbjct: 255 IYAYTDNPLQTAVLSLFASLKYRFPNLVVGSITRESVKKALLNGISADQIISYLITHAHP 314
Query: 199 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
+ P +P V DQIRLWE + NR++ Y F S+ +E YA++ +LWE
Sbjct: 315 NMRKNNPLLPVTVQDQIRLWELEKNRLKSREGFLYTAFASQADYELVLQYAKELDVVLWE 374
Query: 259 DSKKMRLVVNAEIHMHMREFL 279
++ K + E H +++ F+
Sbjct: 375 NASKRCFFGSLEGHANIKGFI 395
>gi|442757633|gb|JAA70975.1| Putative rna polymer [Ixodes ricinus]
Length = 459
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 133/225 (59%), Gaps = 5/225 (2%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
+ L L FL G + Y+ +SE ++ + GLV Q+ R+ F PT+LA NL+
Sbjct: 232 TFLFQLSFLTLG--KDYSTEGMSESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLA 288
Query: 118 MSLTDSSAR--KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
L +++ R + G++VVETN+R+YAY+ S+L +L LF ++ Y+LPNL+VG +T+ES+
Sbjct: 289 SGLKETNLRSYESGYIVVETNYRVYAYTDSQLQVALLALFCELMYRLPNLVVGVLTRESV 348
Query: 176 YNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEE 235
A +GIT+ QII FLQ +AHP + P +P + DQ+RLWE + +R Y +
Sbjct: 349 RQALRSGITSNQIIKFLQMHAHPEAQKQSPVIPPTIMDQLRLWELERDRFNFREGVLYSQ 408
Query: 236 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
F S+ F+ +YA D L+W++ K +VVN H ++ F +
Sbjct: 409 FISQSDFQLLRNYASDLGVLIWDNPSKRVMVVNRNGHDEVKRFWK 453
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 86/230 (37%), Positives = 137/230 (59%), Gaps = 5/230 (2%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
I S L L F G + Y++ +SE + ++ + GLV Q+ RK + PT+LA N
Sbjct: 231 ILSFLFQLSFSTLG--KDYSVEGMSESLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAIN 287
Query: 116 LSMSLTDSS--ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 173
LS ++ + R +GF++VETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+E
Sbjct: 288 LSSGISGITIDTRNQGFIIVETNYRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRE 347
Query: 174 SLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 233
S+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ + Y
Sbjct: 348 SVQQAIANGITADQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFSEGVLY 407
Query: 234 EEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
+F S+ FE D+AR+ L++E+ K +VV H ++ F + Q
Sbjct: 408 NQFLSQVDFELLRDHARELGVLIFENPSKRLMVVTPAGHSDVKRFWKRQK 457
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 132/214 (61%), Gaps = 8/214 (3%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-----LTDSSARKE 128
Y+ L E Q M++DF D GLV Q+ F PT+LAT L+ S L+ + +E
Sbjct: 275 YSTEELPETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQE 333
Query: 129 --GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A NGITAE
Sbjct: 334 ERGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAE 393
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QII++L +AH ++ P +P V DQIRLWE + NRV+ + +F S+ FE
Sbjct: 394 QIITYLTHHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVR 453
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+YA+ L+W+D +K R V+ + +R+++R
Sbjct: 454 NYAKQLGVLVWQDEEKRRFFVDEAGNEPVRDYIR 487
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 157 bits (396), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 84/214 (39%), Positives = 133/214 (62%), Gaps = 4/214 (1%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFV 131
Y+ +SE ++ + GL+ Q+ R+ F PT+LA N++ S KEG++
Sbjct: 252 YSTIGMSEGLLVFLQHLREFGLI-YQRKRRGGRFYPTRLALNIACGENKSLQQMNKEGYI 310
Query: 132 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 191
++ETN+R+YAY+ S L +L LF ++ Y+ PNL VG IT++S+ AF++GITAEQI+ F
Sbjct: 311 IIETNYRVYAYTDSNLQVALLGLFCEMLYRFPNLSVGLITRDSVRQAFKSGITAEQIVGF 370
Query: 192 LQQNAHPR-VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 250
L+ +AHPR +A P++P V DQI+LWE++LNR+ + Y +F S+ FEA D A
Sbjct: 371 LRLHAHPRMIAVGPPTLPPTVVDQIKLWENELNRLVYSDGVLYSQFLSQADFEALRDRAN 430
Query: 251 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+WE+ KK +VV H +++F + +K
Sbjct: 431 ELGVLVWENDKKRTMVVTKSGHDDVKKFWKSYSK 464
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 135/208 (64%), Gaps = 8/208 (3%)
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--SLTDSSARK--EGFVVVETNFR 138
Q+ ++ +LG++ +++ RK+ F T+L T+L+ ++ D+SA K G V+VETNFR
Sbjct: 246 QQELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDTSAEKVSNGKVIVETNFR 304
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP
Sbjct: 305 VYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAHP 364
Query: 199 R---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
+ + + +P V DQIRLWE + R+++ ++ Y F S + F CDYA++R L
Sbjct: 365 QCIATSGPVNCLPITVADQIRLWEDERRRMDLKDSYIYSNFESDEEFNGVCDYAKERKIL 424
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLRGQN 283
LW D ++ ++VN E H ++R++ + Q
Sbjct: 425 LWADYQRKLVIVNEEGHEYVRQWYKQQK 452
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/217 (35%), Positives = 124/217 (57%), Gaps = 9/217 (4%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSS--------A 125
Y++ L+ Q+ M+ D LGL+ Q+ +K + F PT LAT+L+ + + A
Sbjct: 247 YSVEVLTPTQKHMLDDLKHLGLI-YQRKKKSTRFYPTHLATSLTSGASAGAVLSPRSLEA 305
Query: 126 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 185
+GF+++ETN+R+YAY+ S L +L LF ++ + N+++G IT++S+ A GI+A
Sbjct: 306 DSDGFIIIETNYRVYAYTDSPLQIAVLSLFIEMRVRFANMVIGIITRDSVREALAKGISA 365
Query: 186 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 245
EQII++L +AHP + P +P + DQ+RLWE + NR+ ++ H Y+ F +
Sbjct: 366 EQIIAYLTTHAHPEMKKGSPVLPTTIVDQVRLWEMERNRLRISRGHLYQMFSGEQEYREI 425
Query: 246 CDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
YA D LW K +VV+AE H H++ F Q
Sbjct: 426 LKYATDLGYELWHSDSKRLVVVSAEGHEHIKVFFSKQ 462
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 150/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLMFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 127/214 (59%), Gaps = 8/214 (3%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSAR 126
Y+ L E Q M++DF D GLV Q+ F PT+LAT L+ +S S
Sbjct: 275 YSTEELPETQLHMLEDFRDYGLV-YQRKASSRRFYPTRLATTLTSSAAAPLLSTNGSEPE 333
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
+ G++++ETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A NGITAE
Sbjct: 334 ERGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLLVGSITRDSVKSALANGITAE 393
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QII++L +AH ++ P +P V DQIRLWE + NRV+ + +F S+ F
Sbjct: 394 QIITYLTHHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQPDFAEVR 453
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+YA L+W D K RL V+ + +R+++R
Sbjct: 454 NYASQLGVLVWHDEPKRRLFVDEAGNEPVRDYIR 487
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 150/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHGDVKRFWKRQK 460
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ +LGLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLRELGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF++VETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF++VETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 SPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|213402795|ref|XP_002172170.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
gi|212000217|gb|EEB05877.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
Length = 444
Score = 154 bits (389), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 125/202 (61%), Gaps = 7/202 (3%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD-----SSARKE 128
Y+++ L++ Q+ M++D + GLV Q+ F PT+LAT+L+ S +
Sbjct: 231 YSVHFLTDTQQIMLEDLREYGLV-YQKKSSSRRFYPTRLATSLTTEYHSPVKGAGSDAGK 289
Query: 129 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 188
GF++VETN+R+YAY+ S L IL LF+ + + NLIVG IT++S+ A ++GITAEQI
Sbjct: 290 GFIIVETNYRLYAYTDSPLQIAILGLFTNLRARFSNLIVGVITRDSIRRALQSGITAEQI 349
Query: 189 ISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
I++L +AHP++ IP +P + DQI LWE + NR+ TP + +F + FE A Y
Sbjct: 350 ITYLTTHAHPQMRKEIPLLPPTLVDQIYLWELERNRLRATPGILFRDFLTDKDFEKAVQY 409
Query: 249 ARDRSGLLWEDS-KKMRLVVNA 269
A++ L+W+ S K+M + NA
Sbjct: 410 AKELGVLVWDSSLKRMFFITNA 431
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 114/179 (63%), Gaps = 2/179 (1%)
Query: 102 RKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
RK + PT+LA NL+ ++ + K+GF+VVETNFR+YAY+ S L EIL LF +
Sbjct: 1 RKSMRYYPTRLAINLASGVSSMAKDDHKDGFIVVETNFRIYAYTESDLQVEILGLFCSMM 60
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWE 219
Y+ PNL V A+T+ES+ A NGITAEQI+SFL+ +AHP + + P VP + DQ+RLWE
Sbjct: 61 YRFPNLSVAALTRESVQLAISNGITAEQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWE 120
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ +R+ T Y EF S FE DYA+D L+W+ + + ++V+ H ++++
Sbjct: 121 LERDRLSFTQGIIYNEFLSLHDFEVLRDYAKDLGVLIWDSTARRIMIVSPAGHDSVKKY 179
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 145/237 (61%), Gaps = 12/237 (5%)
Query: 55 LIQSILRSLKFLCQGI---LEAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 110
LIQ +L + + G E Y ++ +E Q ++ +LG++ +++ RK+ F T
Sbjct: 181 LIQIVLLANRVQVAGFKAERECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLT 239
Query: 111 KLATNLSMSLT--DSSARK--EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
+L T+L+ + T D SA K G V+VETNFR+YAY++S L I+ LF+++ Y+ ++
Sbjct: 240 QLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMS 299
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLN 223
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + + +P V DQIRLWE +
Sbjct: 300 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERR 359
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
R+ + A+ Y F S D F C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 360 RMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 416
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQVIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ VFE +AR+ L++E+S K
Sbjct: 381 NPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVVFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 72 EAYNLN-TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSARK- 127
E Y ++ +E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D SA K
Sbjct: 197 ECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKV 255
Query: 128 -EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA
Sbjct: 256 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 315
Query: 187 QIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
QIISFL+ NAHP+ + + +P V DQIRLWE + R+ + A+ Y F S D F
Sbjct: 316 QIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFH 375
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 376 GVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 412
>gi|321470926|gb|EFX81900.1| hypothetical protein DAPPUDRAFT_210868 [Daphnia pulex]
Length = 463
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 167/323 (51%), Gaps = 57/323 (17%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ--------SILR-SLKF 65
L+ YA+G+WEC L ++ S Q E SS +++ Q L++ SI + +F
Sbjct: 141 LDEYAMGRWECVLHFMVGSHQHE---AISSDALQILQHAGLMKKEPGENQLSITKDGFQF 197
Query: 66 L----------------------------CQGIL---------EAYNLNTLSEIQRSMIK 88
L C G L + Y+ +++++ + ++
Sbjct: 198 LLMDTSAQVWYFLLQYLDTANSRNLDLIDCLGFLFQLSFSTLGQDYSTDSMNDGLQKFLQ 257
Query: 89 DFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSARKEGFVVVETNFRMYA 141
+ GLV Q+ RK+ F PT+LA +++ ++ ++S++ G++VVETN+R+YA
Sbjct: 258 HLREFGLV-YQRKRKDGRFYPTRLALDIAAGPKKSMLNSLNASSQTTGYIVVETNYRVYA 316
Query: 142 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA 201
Y+ S L ++ LF ++ Y+ PNL+VG IT+ES+ A + GITA+QI+SFL+Q+AH
Sbjct: 317 YTDSSLQVALIALFCELIYRFPNLVVGIITRESVREALKRGITADQIVSFLRQHAHSECY 376
Query: 202 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 261
P +P + DQI+LW + +R Y +F S+ FE +YA++R L+W
Sbjct: 377 KEPPVLPSTIADQIKLWAIERDRFLYKDGVLYNQFDSQADFEILRNYAQERGLLVWHTLN 436
Query: 262 KMRLVVNAEIHMHMREFLRGQNK 284
++VV E H +R+F + ++
Sbjct: 437 GRKMVVTKEGHDEVRKFWKRHSR 459
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 145/237 (61%), Gaps = 12/237 (5%)
Query: 55 LIQSILRSLKFLCQGI---LEAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 110
LIQ +L + + G E Y ++ +E Q ++ +LG++ +++ RK+ F T
Sbjct: 231 LIQIVLLANRVQVAGFKAERECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLT 289
Query: 111 KLATNLSM--SLTDSSARK--EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
+L T+L+ ++ D SA K G V+VETNFR+YAY++S L I+ LF+++ Y+ ++
Sbjct: 290 QLLTHLATNETIDDVSAEKVSNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMS 349
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLN 223
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + + +P V DQIRLWE +
Sbjct: 350 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERR 409
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
R+ + A+ Y F S D F C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 410 RMNLKDAYIYSHFESEDEFHGVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 466
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 84/217 (38%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Query: 72 EAYNLNT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT--DSSARK- 127
E Y ++ +E Q ++ +LG++ +++ RK+ F T+L T+L+ + T D SA K
Sbjct: 247 ECYQIDANWTEPQNELLNHLRELGVIFIRK-RKDGVFFLTQLLTHLATNETIDDVSAEKV 305
Query: 128 -EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
G V+VETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA
Sbjct: 306 SNGKVIVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAA 365
Query: 187 QIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
QIISFL+ NAHP+ + + +P V DQIRLWE + R+ + A+ Y F S D F
Sbjct: 366 QIISFLRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDEFH 425
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
C+YAR ++ LLW D+++ ++VN + H +R++ +
Sbjct: 426 GVCEYARQQNILLWSDNQQKLVIVNEDGHELVRQWYK 462
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 215 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 260
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 261 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 153 bits (387), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 149/260 (57%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 128/215 (59%), Gaps = 11/215 (5%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSA 125
Y++ S+ Q ++ D D GLV L Q + F PT+L T L+ + SS+
Sbjct: 235 YSMKNFSDTQVQVLNDLVDYGLVYLTQSKT---FYPTRLVTTLTSTAPPIVSNPSDQSSS 291
Query: 126 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 185
F+++ETN+R+YAY+++ L IL LF + + PNL++G+IT+ES+ AF+NGI A
Sbjct: 292 DPNEFLILETNYRIYAYTSNPLQIAILNLFISFKSRFPNLVIGSITRESIKMAFKNGIRA 351
Query: 186 EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAA 245
+QIIS+L+ ++H ++ P +P V DQIRLWE + NRV + YE+F S +E
Sbjct: 352 DQIISYLEFHSHSQMKLLKPILPNTVVDQIRLWELEKNRVRDQEGYLYEDFKSVSDYEIV 411
Query: 246 CDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+Y++ +LWE+ + + V+ + H +REF++
Sbjct: 412 INYSKQIDIILWENPELKKFFVSLDGHTALREFIK 446
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 136/236 (57%), Gaps = 12/236 (5%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
I S L L F G Y++ +SE + ++ + GLV Q+ RK + PT+LA
Sbjct: 224 ILSFLFQLSFSTLG--RDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAIT 280
Query: 116 LSMSLTDSSARK---------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
L+ ++ +S GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++
Sbjct: 281 LAAGVSSNSPSNMTNTPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNVV 340
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVE 226
V +T+ES+ A NGITA+QII FL+ AHP + + P++P + DQIRLWE + +R++
Sbjct: 341 VAHLTRESVQQAIANGITAQQIIHFLRTRAHPVMLKQSPALPPTITDQIRLWELERDRLQ 400
Query: 227 MTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
T Y +F S+ FE D A+ L+W+D+ +VV + H +++F + Q
Sbjct: 401 FTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDASHRAMVVTPQGHSEVKKFWKRQ 456
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 147/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 215 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 260
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 261 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELGRDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 167/326 (51%), Gaps = 59/326 (18%)
Query: 12 LEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRS--------L 63
+E L+ +A+ +WE L ++SS + PT S ++ + QR L+ ++ +
Sbjct: 144 IEFLDVFALERWETILHYMVSSGSGQNPTKPSVRVLFLLQRSGLMTTVGQGPLQITSAGF 203
Query: 64 KFLCQ----------------------------GIL---------EAYNLNTLSEIQRSM 86
+FL G L Y+ LS+ Q +M
Sbjct: 204 QFLLHSPHEQLWELLLQYLHLTEERQMDLVDVLGFLFMLSTMELGREYSTERLSKTQTAM 263
Query: 87 IKDFADLGLVKLQQGRKESWFIPTKLATNLSMS-------LTDSSARKEGFVVVETNFRM 139
++D D GL+ ++ + F PT+LAT L+ S + + S +EGF+V+ETN+R+
Sbjct: 264 LEDLVDYGLIWRRKPSSKG-FHPTRLATTLTSSSPPLPSSIGNRSGPQEGFIVLETNYRI 322
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAY+ + L IL LF ++Y+ PNL+VGAIT++S+ A NGI+A+QIIS+L +AHP+
Sbjct: 323 YAYTDNPLQTAILNLFVSLKYRFPNLVVGAITRDSVKKALLNGISADQIISYLMSHAHPQ 382
Query: 200 VADRI------PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
+ + P +P V DQIRLWE + NR++ + Y F S+ ++ +YA++
Sbjct: 383 MRKNVRLRSCNPLLPVTVQDQIRLWELEKNRLKSQEGYLYTSFASQADYDFVLNYAKELG 442
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFL 279
+LWE+ K + + H ++R F+
Sbjct: 443 VVLWENPVKRCFFGSLDGHANIRGFI 468
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 NPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD---SSARKE 128
+ Y+ L++ Q + ++ ++GLV +Q+ RK+ F PT+LA NL+ ++
Sbjct: 234 QNYSTEGLTQTQLTCLQHMREIGLV-VQRKRKDMKFYPTQLAINLASGAKQEELDHSKSS 292
Query: 129 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQI 188
G+++VETN+R+YAY+ S L ++ LF ++ Y+LP L VG IT+ES+ AF NGITA +I
Sbjct: 293 GYIIVETNYRLYAYTESPLDIALVALFCEMMYRLPGLCVGLITRESVQQAFTNGITANKI 352
Query: 189 ISFLQQNAHPRVADRI--PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
I+F++ +AHP ++ P VP + DQ+ LWE + R+ + Y + S FEA
Sbjct: 353 INFIRTHAHPEAKKKVTTPIVPSTIIDQLYLWELERGRLSCSDGVLYNQILSSSDFEALR 412
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA D LLW K LVVN + H H++ F +
Sbjct: 413 KYADDMGVLLWASPAKRLLVVNRDGHNHVKHFWK 446
>gi|255079788|ref|XP_002503474.1| predicted protein [Micromonas sp. RCC299]
gi|226518741|gb|ACO64732.1| predicted protein [Micromonas sp. RCC299]
Length = 458
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 130/219 (59%), Gaps = 6/219 (2%)
Query: 63 LKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQG-RKESWFIPTKLATNLSMSLT 121
L+ Q + + Y ++ L QR++ +D A LGL+ L G KE +++PT+L ++
Sbjct: 240 LRLTFQAVGQPYRVDDLPSAQRAIAEDLAHLGLLYLFAGPGKEGYYVPTQLTAGKDVADG 299
Query: 122 DSSARKE--GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
D+S + G ++ ETNFR+YAY+ S + CEILRLF++ +Y+LPNL VG +T+E+++ A
Sbjct: 300 DASLGGDPGGHIIAETNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVHEAL 359
Query: 180 ENGITAEQIISFLQQNAHP--RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
+ G+ AEQII +++ +AHP R +P NV DQI LW + RV Y +FP
Sbjct: 360 DTGVAAEQIIKYIKSHAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYCDFP 419
Query: 238 S-RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 275
+ D + AA A D LLWE+ ++M+L V H M
Sbjct: 420 TGTDEYAAAVKAASDAGVLLWENREQMKLAVAKSGHERM 458
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 159/336 (47%), Gaps = 67/336 (19%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQG 69
P++E L+ YA+ +WE L ++SS + PT S ++ + QR L+ +L+ G
Sbjct: 140 PSVEILDTYALERWETILHFMVSSGTGQMPTKPSQGVLYLLQRSKLMAPTQGTLQITSSG 199
Query: 70 I-------------------------------------------------LEAYNLNTLS 80
Y+ +LS
Sbjct: 200 FQFLLHTPHAQLWELLLQYLAMVEERQMDLVEVLSFLFMLSTMELGRVRQFHDYSAESLS 259
Query: 81 EIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD----------SSARKEGF 130
+ Q++M++D D GL+ Q+ F PT+LAT L+ SL + + +GF
Sbjct: 260 DTQKAMLEDLRDYGLI-WQRKATSRRFSPTRLATTLTSSLPPLPTASGTGTSGTGQTQGF 318
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++ETN+R+YAY+ + L +L LF ++ + PNL+VG+IT++S+ A NGITA+QIIS
Sbjct: 319 IILETNYRLYAYTDNPLQTAVLNLFVTMKSRFPNLVVGSITRDSVRKALSNGITADQIIS 378
Query: 191 FLQQNAHPRVADRI-------PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
+L AHP++ + P +P V DQIRLWE + NR++ Y F S+ +E
Sbjct: 379 YLTTYAHPQMRKNVSRCRSFTPLLPVTVQDQIRLWELERNRLKSQEGFLYTAFASQADYE 438
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
YA+ +LWE+ K E H ++R F+
Sbjct: 439 YVLTYAKQLDVVLWENPTKRCFFGTMEGHANIRGFI 474
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 133/242 (54%), Gaps = 34/242 (14%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------- 118
+AY+ L+ Q + D AD G+V Q S F PT+LAT L+
Sbjct: 243 KAYDKKHLTSNQLRTLTDLADFGIV-YQDSPDASHFYPTRLATTLTSDSSALSNPISGSL 301
Query: 119 ---SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
S T S+ GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 302 SGPSGTGSNKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSV 361
Query: 176 YNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDL 222
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ +
Sbjct: 362 RRAIEMGITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVTDQIRLWQLER 421
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+RV+ TP +++F S +EA C YA + L+W+ D K+M V H + FLR
Sbjct: 422 DRVKATPGFLFKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HEQVAAFLRS 478
Query: 282 QN 283
+
Sbjct: 479 RK 480
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 151/272 (55%), Gaps = 28/272 (10%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + + +A R + + + +FQ S + L QG+L +
Sbjct: 233 FMLQYLDTCEA-RGLDLAECLSMLFQLSFSTLGRDYSSEGLSQGLL-------------T 278
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSARKEGFVVVETNFR 138
++ + GLV Q+ RKE F PT+LA N++ + S+A+ +G++VVETN+R
Sbjct: 279 FLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSRNAVPTIQEDGSAAQDKGYIVVETNYR 337
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ AF GITA+QIIS+L+Q+AHP
Sbjct: 338 VYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITADQIISYLEQHAHP 397
Query: 199 ------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 252
+ + ++P V DQI+LWE++ NR T Y +F S+ F DYA+
Sbjct: 398 TMHNVEQTINTKSALPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSI 457
Query: 253 SGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
++W++ + +VV H +++F + +K
Sbjct: 458 GVMIWQNERTRTMVVTKNGHDDVKKFWKRYSK 489
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 150/260 (57%), Gaps = 16/260 (6%)
Query: 37 ERPTNFSSSMMKVFQ----RGL-LIQ--SILRSLKFLCQGILEAYNLNTLSEIQRSMIKD 89
+RP+ M++ + RG+ L++ S+L L F G + Y + L++ Q ++
Sbjct: 214 DRPSQVWYFMLQCLETVEARGMDLVECLSLLFQLSFSSPG--KDYPTDGLTDSQMKFLQQ 271
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLS-----MSLTDSSARKEGFVVVETNFRMYAYST 144
++GLV Q+ RK + PTKL+ NL+ ++ TDS + GF+++ETN+R+YAY+
Sbjct: 272 LREIGLV-FQRKRKSRRYYPTKLSVNLTAAGKGINTTDSQI-EAGFIIIETNYRVYAYTE 329
Query: 145 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 204
S L ++ LF +I + PNL V ++T+ES A +GI+AEQI++FLQ AHP + R
Sbjct: 330 SCLQVSLIGLFCEILCRFPNLCVASLTRESCQQALASGISAEQILNFLQTRAHPEMLKRT 389
Query: 205 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 264
P +P + DQ+RLWE + +R++ T Y +F S+ FE YA D L+W +S K
Sbjct: 390 PIIPSTISDQVRLWEMERSRMKFTEGVLYNQFLSQADFEMLRKYAEDLGVLIWANSTKRV 449
Query: 265 LVVNAEIHMHMREFLRGQNK 284
+VV+ H ++ F + Q +
Sbjct: 450 VVVSRSGHDDVKRFWKRQRQ 469
>gi|19113355|ref|NP_596563.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe 972h-]
gi|62901133|sp|P87303.2|TFB2_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|3080538|emb|CAA18666.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe]
Length = 447
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 161/322 (50%), Gaps = 54/322 (16%)
Query: 9 LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRS 62
L T++ L+AYA WE L ++ + +A+ P ++ + +RG L+ I R+
Sbjct: 125 LVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRA 181
Query: 63 -LKFLCQGI-------------------------------------LEAYNLNTLSEIQR 84
+FL Q I AY+++ L++ Q+
Sbjct: 182 GFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQ 241
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFR 138
M++D + GLV Q+ F PT+LAT L+ ++ +GF++VETN+R
Sbjct: 242 IMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYR 300
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY++S L I+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP
Sbjct: 301 LYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHP 360
Query: 199 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
++ +P +P + DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+
Sbjct: 361 QMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWD 420
Query: 259 DSKKMRLVVNAEIHMHMREFLR 280
S K + M +L+
Sbjct: 421 SSLKRMFFITTTGAQPMIAYLK 442
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 130/230 (56%), Gaps = 13/230 (5%)
Query: 62 SLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 121
+L+ L + + Y+ LS Q ++ D GL+ Q+ + F PT+LAT L+ S
Sbjct: 241 NLEMLTGDLHQEYSTENLSTSQLVVMDDLRHYGLL-WQRKKNYPRFSPTRLATTLTSSAP 299
Query: 122 D-------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
+S KEGF+V+ETN+R+YAY+ + L +L LF +Y+ PNL+VG+IT+ES
Sbjct: 300 PLPTSSGPTSGPKEGFIVLETNYRVYAYTDNALQTAVLNLFITPKYRFPNLVVGSITRES 359
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWESDLNRVEMTP 229
+ A NGITA+QIIS+L +AHP++ + P +P V DQIRLWE + NR +
Sbjct: 360 VKRAMSNGITADQIISYLITHAHPQMHKNVCLVANPLLPVTVQDQIRLWELERNRTKSQE 419
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
Y EF S+ +E +YA+ +LWE+ K E H +++ F+
Sbjct: 420 GFLYTEFASQADYEYVLNYAKQLGVVLWENHAKRCFFAAQEGHANIKSFI 469
>gi|330918142|ref|XP_003298106.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
gi|311328891|gb|EFQ93800.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
Length = 482
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/205 (37%), Positives = 120/205 (58%), Gaps = 20/205 (9%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTD----- 122
Y+ +TLS Q M+ D + +GL+ + + F PT+LAT L+ MS +
Sbjct: 248 YSTSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQ 306
Query: 123 --------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
S+A +GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES
Sbjct: 307 AGQGNAGPSAAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKES 366
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
++ A ++GIT+ QIIS+L AHP++ +P +P V DQIRLWE + RVE TP +
Sbjct: 367 VHKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMR 426
Query: 235 EFPSRDVFEAACDYARDRSGLLWED 259
EF S + YA L+W++
Sbjct: 427 EFSSDTEYRDVMGYASALGVLVWQN 451
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 124/201 (61%), Gaps = 3/201 (1%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAY 142
+ ++ + GLV Q+ RK + PT+LA NLS ++ + + + GF+VVETN+R+YAY
Sbjct: 7 NFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAY 65
Query: 143 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 202
+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP +
Sbjct: 66 TESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLK 125
Query: 203 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
+ P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 126 QTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAK 185
Query: 263 MRLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 186 RLMVVTPAGHSDVKRFWKRQK 206
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 166/317 (52%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
++ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 ETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLSTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P V
Sbjct: 328 VALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGYLQQHAHGKMIEAGPPVL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W++ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDVKKFWKRYSK 464
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 157/321 (48%), Gaps = 52/321 (16%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQ-------------------AERPTNFSSSMMKVFQ 51
T+E L+ +A QWE L ++ S A + SS +
Sbjct: 111 TIEQLDTFATQQWELILHYMVGSYNSTPSKGVLFLLEKSNLIYTANKQHRISSKGFQFLL 170
Query: 52 RGLLIQ-----------------SILRSLKFL-CQGILEA---YNLNTLSEIQRSMIKDF 90
+ +Q ++ L FL G LE Y++ +L+ Q++M+ D
Sbjct: 171 EDVQVQLWQLLLEYLSLSEIRQMDLVEVLSFLFVLGTLELGKDYSIESLTNTQQAMLSDL 230
Query: 91 ADLGLVKLQQGRKESWFIPTKLATNLSMS-----------LTDSSARKEGFVVVETNFRM 139
D GLV Q+ F PT+LAT L+ S +S+ + F+++ETN+R+
Sbjct: 231 RDYGLV-WQRKTSSKRFYPTRLATTLTSSAPPLLPTTESSSFTTSSDNKRFIILETNYRL 289
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAY+++ L IL LF ++ + PNL++G IT++S+ +A NGITAEQII +L +AH +
Sbjct: 290 YAYTSNPLQISILNLFVTLKARYPNLVIGVITRDSIRSALSNGITAEQIIGYLTSHAHTQ 349
Query: 200 VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
+ P +P V DQIRLWE + NR++ Y EF S+ +E +YA+ +LW +
Sbjct: 350 MHRNNPLLPVTVSDQIRLWELEKNRLKADDGVLYAEFRSQPDYEILLNYAKSYDCVLWSN 409
Query: 260 SKKMRLVVNAEIHMHMREFLR 280
K V E H +REF+R
Sbjct: 410 DIKRMFFVTLEGHQIVREFVR 430
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 127/218 (58%), Gaps = 11/218 (5%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS----------MSLT 121
+ Y+ +TLS Q M+ D D GLV S F PT+ AT L+ +++
Sbjct: 240 QHYSTHTLSPTQLIMVSDLRDFGLVYFPSDTTTS-FQPTRFATTLTSYTSSFSDHDLTIE 298
Query: 122 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 181
+ + + FVV+ETN+ +YAY+ + L +L LF + + PN+I+G++T++S+ A N
Sbjct: 299 NGADLSQEFVVLETNYHVYAYTNNPLQIAVLNLFVSFKARFPNMIMGSLTRDSVKKALVN 358
Query: 182 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
GITA+QI+S+L +AHP++ P +P V DQIRLWE + +RV+ + Y+EF S +
Sbjct: 359 GITADQILSYLVTHAHPQMRKNNPIIPVTVQDQIRLWELERHRVKGQDGYLYKEFASMND 418
Query: 242 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+E YAR+ +LWE++ + +A +H+R ++
Sbjct: 419 YEVVVQYARELGVVLWENASRRMFFADAAGRVHIRSYI 456
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 138/229 (60%), Gaps = 8/229 (3%)
Query: 59 ILRSLKFLCQGILEA----YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT 114
+++ L FL Q Y +N L+E Q S ++ ++GL Q+ RK F PT+LA
Sbjct: 226 LVQCLSFLFQTSFSVLGKDYPVNDLTEAQFSFLQLLREIGLA-FQRKRKSKRFYPTRLAI 284
Query: 115 NLSMSLT---DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
NL ++T DSS++++GF+VVETN+R+YAY+ S LH +L LF+ I+ + P+ V ++
Sbjct: 285 NLGSAVTGNSDSSSQQQGFLVVETNYRVYAYTDSVLHIALLSLFTDIKARFPSFTVALLS 344
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAH 231
+ES+ A GI+AEQII FL+ AH ++ P + + DQI+LWE + +R+ +
Sbjct: 345 RESVQQALACGISAEQIIDFLKTRAHSQMTTSSPIIASTITDQIKLWEMERDRLRYSQGV 404
Query: 232 YYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
Y +F S+ FE +A +++ LLW +++K +VV+ H ++++ +
Sbjct: 405 LYNQFLSQSDFEMLRKFADEKNHLLWANNQKRLMVVSKSGHEDVKKYWK 453
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 150 bits (378), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 128/219 (58%), Gaps = 9/219 (4%)
Query: 68 QGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS----LTDS 123
Q + Y+ TL+ +Q ++K F LGLV + K + PT+LA L+ L
Sbjct: 245 QELGRVYSSETLNPLQLHILKTFGGLGLVYVY---KSGDYSPTRLAVTLTSGAPPLLKAG 301
Query: 124 SARKE-GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
+A +E GF+++ETN+R+YAY+ + L +L LF ++ + P L+VG IT+ES+ NG
Sbjct: 302 TAEEEQGFLILETNYRVYAYTQNPLQIAVLNLFVALKSRFPGLVVGMITRESIKAGLANG 361
Query: 183 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 242
I ++QII+FL +AHP++ + P +P V DQI+LWE + NRV+ P Y++F S+ +
Sbjct: 362 IKSDQIIAFLTAHAHPQMRKQEPLLPPTVVDQIKLWEREKNRVKTEPCFLYDDFRSQADY 421
Query: 243 EAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLR 280
+ CDYA+ +LW + R + H+ +R F++
Sbjct: 422 DLVCDYAKQIGAVLWLGEPGSRRFATTEDGHVQVRGFIQ 460
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 158/323 (48%), Gaps = 54/323 (16%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQ 68
P + L+AYA+ +WE L ++SS PT S ++ + QR GL+ + +L+
Sbjct: 143 PNINTLDAYALERWETILHYMVSSGTGHYPTRPSQEVLFLLQRSGLMTNAHGGALQITSS 202
Query: 69 G--------------------------------------------ILEAYNLNTLSEIQR 84
G + Y+ L+ Q
Sbjct: 203 GFQFLLHSPHAQLWELLVQYLYMVEERQMDLVDVLSFLLMLSTMELGREYSTENLTATQT 262
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL--------TDSSARKEGFVVVETN 136
+M+ D + GLV QQ F P++LAT L+ S + + EGF+V+ETN
Sbjct: 263 AMLTDLRNYGLV-WQQSPSSRRFSPSRLATTLTSSSSPLPTSQNSGTGPHGEGFIVLETN 321
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
+R+YAY+ + L +L LF ++ + PNL++GAIT+ES+ A NGITA+QIIS+L +A
Sbjct: 322 YRIYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRESVKKALANGITADQIISYLTAHA 381
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
HP++ P +P V DQIRLWE + NRV+ + Y F S+ +E +YA+ +L
Sbjct: 382 HPQMHKNKPLLPVTVQDQIRLWELERNRVKSEEGYLYTSFASQADYEYVLNYAKQLDVVL 441
Query: 257 WEDSKKMRLVVNAEIHMHMREFL 279
WE+ + + + H ++R F+
Sbjct: 442 WENPSRRSFFGSLDGHANIRGFI 464
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 89/272 (32%), Positives = 148/272 (54%), Gaps = 28/272 (10%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + + +A R + + + +FQ S + L QG+L +
Sbjct: 228 FMLQYLDTCEA-RGLDLAECLSMLFQLSFSTLGRDYSSEGLSQGLL-------------T 273
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDSSARKEGFVVVETNFR 138
++ + GLV Q+ RKE F PT+LA N++ + SS + +G+++VETN+R
Sbjct: 274 FLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNAVQTIQEDGSSVQDKGYIIVETNYR 332
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ AF GITAEQIIS+L+Q+AHP
Sbjct: 333 VYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITAEQIISYLEQHAHP 392
Query: 199 RVADRIPSV------PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 252
+ + ++ P V DQI+LWE++ NR T Y +F S+ F DYA+
Sbjct: 393 TMLNMEQAINSKSPLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDFNTLRDYAQSI 452
Query: 253 SGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ W++ + +VV H ++ F + +K
Sbjct: 453 GVMTWQNERTRTMVVTKNGHDDVKRFWKRYSK 484
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 149 bits (377), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
++ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 ETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLSTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P V
Sbjct: 328 VALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGYLQQHAHGKMIEAGPPVL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR Y +F S+ FE D+A L+W++ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFIFNEGVLYSQFLSQTDFEVLRDHALSTGVLIWQNERKRTIVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDVKKFWKRYSK 464
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 132/242 (54%), Gaps = 17/242 (7%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
I S L L F G Y++ +SE + ++ + GLV Q+ RK + PT+LA
Sbjct: 225 ILSFLFQLSFSTLG--RDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAIT 281
Query: 116 LSMSLTDSSARKE--------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
L+ +T + A GF+VVETN+R+YAY+ S+L ++ LFS++ Y+
Sbjct: 282 LAAGVTANPASGSASSALGAIPGTGDTGFIVVETNYRIYAYTNSELQIALVALFSEMLYR 341
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221
PNL+V +T+ES+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE +
Sbjct: 342 FPNLVVAQVTRESVQQAISNGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELE 401
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 281
+R++ T Y +F S+ FE D A+ L+W++ +VV H ++ F +
Sbjct: 402 KDRLQFTEGVLYNQFLSQADFEVLRDRAQGLGVLVWQNPAHRVMVVTPHGHSEVKRFWKR 461
Query: 282 QN 283
Q
Sbjct: 462 QK 463
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 165/317 (52%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
++ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 ETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPDKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P V
Sbjct: 328 VALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITASQIVGYLQQHAHSKMIEAGPPVL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W+ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDVKKFWKRYSK 464
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/237 (35%), Positives = 132/237 (55%), Gaps = 13/237 (5%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
I S L L F G Y++ +SE + ++ + GLV Q+ RK + PT+LA
Sbjct: 224 ILSFLFQLSFSSLG--RDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAIT 280
Query: 116 LSMSLTDS----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
L+ +T S GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN+
Sbjct: 281 LAAGVTSSSSVSNLSSSPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNV 340
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 225
+V +T+ES+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE + +R+
Sbjct: 341 VVAQLTRESVQQAIANGITAQQIIHFLRTRAHPVMLTQTPVLPPTITDQIRLWELERDRL 400
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
+ T Y +F S+ FE D A+ L+W+D +VV + H ++ F + Q
Sbjct: 401 QFTEGVLYNQFLSQADFEVLRDRAQGLGCLVWQDVAHRVMVVTPQGHSEVKRFWKRQ 457
>gi|444727354|gb|ELW67853.1| Valyl-tRNA synthetase, mitochondrial [Tupaia chinensis]
Length = 1382
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 152/266 (57%), Gaps = 20/266 (7%)
Query: 26 FLLQLISSAQAER-----------PTNFSSSMMKVFQRGLL--IQSILRSLKFLCQ---- 68
F+LQ + +AQ+ +FS+ + +RG + + ++ L FL Q
Sbjct: 142 FMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKRRGERGRVHTVMDLVEILSFLFQLSFS 201
Query: 69 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSAR 126
+ + Y++ +S+ + ++ + GLV Q+ RK + PT+LA NLS +S +A
Sbjct: 202 TLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAH 260
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
+ GF+VVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+
Sbjct: 261 QPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQ 320
Query: 187 QIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAAC 246
QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y +F S+ FE
Sbjct: 321 QIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLL 380
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIH 272
+AR+ L++E+S K +VV H
Sbjct: 381 AHARELGVLVFENSAKRLMVVTPAGH 406
>gi|50557260|ref|XP_506038.1| YALI0F30173p [Yarrowia lipolytica]
gi|62901293|sp|Q6BZX4.1|TFB2_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49651908|emb|CAG78851.1| YALI0F30173p [Yarrowia lipolytica CLIB122]
Length = 467
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 64/331 (19%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLLIQSILRSLKFLCQ 68
L+A+A+ QWE L ++ ++ P++ S +M+ + GL I + +FL Q
Sbjct: 133 LDAHAVSQWEMILHFMVGTSIGRTPSDGVLNLLKHSGLMEPERGGLRITNA--GFQFLLQ 190
Query: 69 ----------------------------------GILEA---YNLNTLSEIQRSMIKDFA 91
G LE Y+L+ LSE Q+ M++D
Sbjct: 191 DVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLR 250
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKEGFVVV 133
D G+V Q+ F PT+LAT L+ +++ S A GF+++
Sbjct: 251 DYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADSGFIIL 309
Query: 134 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 193
ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQII++L
Sbjct: 310 ETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQIITYLS 369
Query: 194 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
+AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++ YA++
Sbjct: 370 VHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVSTYAKELG 429
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LL+E+ K + V + EF++ +N+
Sbjct: 430 VLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 127/226 (56%), Gaps = 6/226 (2%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL- 116
S L L F G + Y+ +++ Q+ ++ + GLV Q+ R F PT+LA NL
Sbjct: 236 SFLFQLSFSTLG--KDYSTESMTSNQQRFLQHLREFGLV-YQRKRSSQRFYPTRLAVNLA 292
Query: 117 --SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
S +A ++GF+VVETN+R+YAY+ S L ++ LF + Y+ PN+ VG ++++S
Sbjct: 293 TGSKGGDSETASEDGFIVVETNYRVYAYTNSSLKVALISLFCSMMYRFPNMAVGVVSRDS 352
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
+ A GITAEQII+FL+ +AHP R P +P V DQIRLWE + +R Y
Sbjct: 353 VREALSRGITAEQIINFLRNHAHPHTQKRKPILPPTVSDQIRLWELERDRFHFNEGVLYN 412
Query: 235 EFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+F S+ FE DYA+D L +E+ + +VV H ++ F +
Sbjct: 413 QFLSQTDFEVLRDYAKDLGVLSYENIPRRLMVVTRAGHDDVKRFWK 458
>gi|189205068|ref|XP_001938869.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985968|gb|EDU51456.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 482
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 119/205 (58%), Gaps = 20/205 (9%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTD----- 122
Y+ +TLS Q M+ D + +GL+ + + F PT+LAT L+ MS +
Sbjct: 248 YSTSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQ 306
Query: 123 --------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
S+ +GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES
Sbjct: 307 AGQGNAGPSATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKES 366
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
++ A ++GIT+ QIIS+L AHP++ +P +P V DQIRLWE + RVE TP +
Sbjct: 367 VHKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMR 426
Query: 235 EFPSRDVFEAACDYARDRSGLLWED 259
EF S + YA L+W++
Sbjct: 427 EFSSDAEYRDVMGYASALGVLVWQN 451
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
++ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 ETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P +
Sbjct: 328 VALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHSKMIEAGPPIL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W+ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDVKKFWKRYSK 464
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPVITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
++ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 ETASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH ++ + P +
Sbjct: 328 VALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHSKMIEAGPPIL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W+ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDVKKFWKRYSK 464
>gi|169610043|ref|XP_001798440.1| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
gi|160701967|gb|EAT84391.2| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
Length = 426
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 63/322 (19%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQAERPT----NFSSSMMKVFQRGLLIQSILRSLKFL 66
++E L+A+A QWE L ++S A +P + K+ G L++++ + +
Sbjct: 90 SIEFLDAHAREQWEGILFFMVSGAAGFQPGSVKMDVGPGTKKLLHAGDLVRTVHGTPRIT 149
Query: 67 CQG--------------------------------------------ILEAYNLNTLSEI 82
+G + + Y+ +TLS
Sbjct: 150 KEGFSFVLQETNAQVWNLLIVYLKMVDDLGMSETEVLSFLFMLGSLELGQDYSTSTLSPS 209
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------MSLTDSSARKEG 129
Q M+ D + +G+V + + F PT+LAT L+ DS A+ +G
Sbjct: 210 QLHMLDDLSAMGIV-YRSSKDSPTFYPTRLATTLTSDSGALPGSDVGTTEKPDSKAQNKG 268
Query: 130 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 189
F++VETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A + GIT+ QII
Sbjct: 269 FIIVETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHRAVQAGITSAQII 328
Query: 190 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
S+L AHP++ P +P V DQIRLWE + RVE+T + EF S + YA
Sbjct: 329 SYLTTYAHPQMQKSNPPLPPTVMDQIRLWEYEGERVEVTTGYLMREFGSESEYRDVMGYA 388
Query: 250 RDRSGLLWE-DSKKMRLVVNAE 270
+ L+W+ D+ + V + E
Sbjct: 389 QALGVLVWKNDANRCFFVSHVE 410
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDETDGSPIITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
+ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 DTASQVWYFILQYLDTIEARGLDLIECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ T R KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +LQQ+AH + + P +
Sbjct: 328 VALLGLFCEMIYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHSKTIEAGPPIL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI LWE++ NR + Y +F S+ FE D+A L+W++ +K +VV
Sbjct: 388 PPTIVDQIMLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHALTTGVLIWQNERKRTIVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKAGHDDIKKFWKRYSK 464
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/360 (30%), Positives = 167/360 (46%), Gaps = 84/360 (23%)
Query: 4 GITARLP-----TLEDLEAYAIGQWECFLLQLISSAQAERP-TNFSSSMMKVFQRGLLIQ 57
G+ + +P ++ DL+ YA QWE L ++ + P S + ++ Q G L++
Sbjct: 123 GVLSHVPAGSEVSISDLDEYARRQWEGVLGYMVGTGGMGAPQVTLSKGVKELLQAGHLVE 182
Query: 58 SILRSLKFLCQGIL--------------------------------------------EA 73
R ++ G ++
Sbjct: 183 IRDRRVEITQDGFAFVLQDVSTQVWHILILYVESASAIKMDSVEVLSFVFLLSSLELGKS 242
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD-------- 122
Y N LS Q M+ D AD G+V Q+ F PT+LAT L S +L++
Sbjct: 243 YEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSLSG 301
Query: 123 -----SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 302 PAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRR 361
Query: 178 AFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNR 224
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +R
Sbjct: 362 AVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERDR 421
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 283
V+ T +++F S +EA C YA + L W+ D K+M V H + FLR +
Sbjct: 422 VKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 134/242 (55%), Gaps = 34/242 (14%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD------ 122
++Y N LS Q M+ D AD G+V Q+ F PT+LAT L S +L++
Sbjct: 241 KSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSL 299
Query: 123 -------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 300 SGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSV 359
Query: 176 YNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDL 222
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ +
Sbjct: 360 RRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLER 419
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+RV+ T +++F S +EA C YA + L W+ D K+M V H + FLR
Sbjct: 420 DRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRS 476
Query: 282 QN 283
+
Sbjct: 477 RK 478
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 134/242 (55%), Gaps = 34/242 (14%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTD------ 122
++Y N LS Q M+ D AD G+V Q+ F PT+LAT L S +L++
Sbjct: 241 KSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPLLGSL 299
Query: 123 -------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 300 SGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSV 359
Query: 176 YNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDL 222
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ +
Sbjct: 360 RRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLER 419
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+RV+ T +++F S +EA C YA + L W+ D K+M V H + FLR
Sbjct: 420 DRVKATSGFLFKDFVSLAEYEAPCRYAEEIGVLAWKSDRKRMFFVTR---HEQVAAFLRS 476
Query: 282 QN 283
+
Sbjct: 477 RK 478
>gi|427785675|gb|JAA58289.1| Putative rna polymer [Rhipicephalus pulchellus]
Length = 457
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 143/257 (55%), Gaps = 17/257 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + + ++ R N + +FQ L FL G + Y+ +SE
Sbjct: 210 FVLQYLDTLES-RGLNLVECLTFLFQ-----------LSFLTLG--KDYSTEGMSESLLV 255
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR--KEGFVVVETNFRMYAYS 143
++ + GLV Q+ R+ F PT+LA NL+ L +++ R + G+++VETN+R+YAY+
Sbjct: 256 FLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKETTLRSFEAGYIMVETNYRVYAYT 314
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L +L LF ++ Y+ PNL+V +T+ES+ A +GIT+ QII FL+ AHP +
Sbjct: 315 NSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQIIKFLRMYAHPEALKQ 374
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQ+RLWE + +R Y +F S+ F+ +YA + L+W++ K
Sbjct: 375 TPVIPATIMDQLRLWEMERDRFVFREGVLYSQFISQSDFQLLRNYASELGVLIWDNPSKR 434
Query: 264 RLVVNAEIHMHMREFLR 280
+VVN H +++F +
Sbjct: 435 VMVVNRNGHDEVKKFWK 451
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 134/241 (55%), Gaps = 16/241 (6%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
I S L L F G Y++ +S+ + ++ + GLV Q+ RK + PT+LA
Sbjct: 225 ILSFLFQLSFSTLG--RDYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAIT 281
Query: 116 LSMSLTDSS-------------ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
L+ + SS + GF+VVETN+R+YAY+ S+L ++ LFS++ Y+
Sbjct: 282 LATGDSSSSLHTPTASLASTPGSGDSGFIVVETNYRIYAYTNSELQIALVALFSEMLYRF 341
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222
PN++V +T+ES+ A NGITA+QII FL+ AHP + + P +P + DQIRLWE +
Sbjct: 342 PNVVVAQVTRESVQQAIANGITAQQIIHFLRTRAHPVMLRQTPFLPPTITDQIRLWELER 401
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
+R++ T Y +F S+ FE D A+ L+W+D+ +VV H +++F + Q
Sbjct: 402 DRLQFTEGVLYNQFLSQTDFEVLRDRAKSLGCLVWQDAAHRVMVVTLWGHSEVKKFWKRQ 461
Query: 283 N 283
Sbjct: 462 K 462
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 145/251 (57%), Gaps = 20/251 (7%)
Query: 51 QRGLLIQ---SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWF 107
+RGL++ S+L L F G Y+ +++ ++ + GLV Q+ RKE F
Sbjct: 242 ERGLVLAECLSMLFQLSFSTLG--RDYSSEGMNKQMLMFLQHLREFGLV-FQRKRKEHRF 298
Query: 108 IPTKLATNL--------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
PT+LA N+ S+S+ + ++ G++VVETN+R+YAY+ S+L +L LF+++
Sbjct: 299 YPTRLALNVTNKEAAEASISVDEERMQERGYIVVETNYRVYAYTDSQLQVAVLGLFTELL 358
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCD 213
Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q AHP V I S +P V D
Sbjct: 359 YRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYAHPNMKLVESAIQSKSCLPPTVVD 418
Query: 214 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
QI+LWE + NR T Y +F S++ F DYA+ ++ L+W++ + +VV H
Sbjct: 419 QIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQSQNVLVWQNERTRTMVVQKNGHD 478
Query: 274 HMREFLRGQNK 284
++ + + +K
Sbjct: 479 DVKRYWKKYSK 489
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 164/317 (51%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPIITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
+ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 DTASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ A+ KEG++VVETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGENKPLAKDTDKEGYIVVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PN++V +T++S+ A ++GITA QI+ +LQQ+ H ++ +R P +
Sbjct: 328 VALLGLFCEMLYRFPNVVVSILTRDSIRQALKSGITASQIVGYLQQHVHSKMIERGPPIL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W+ +K +VV
Sbjct: 388 PPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHALSTGVLIWQSERKRTMVV 447
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 448 TKTGHDDVKKFWKRYSK 464
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 142/261 (54%), Gaps = 17/261 (6%)
Query: 23 WECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEI 82
W+ F+LQ +++AQ +R + + +FQ L F G + Y+ L+E
Sbjct: 199 WQ-FILQYLNTAQ-DRGMDLIDCLKFIFQ-----------LSFSTLG--KDYSTKGLTES 243
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-DSSARKEGFVVVETNFRMYA 141
Q + + GLV ++ + ++ PTKL L+ T + + GF++VETN+R+ A
Sbjct: 244 QLTFMYHLCQFGLVYQRKSSSKRYY-PTKLVIQLTAGETIGMNTSQAGFIIVETNYRVIA 302
Query: 142 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA 201
Y+ SKLH L LF +++Y+ PN+ VG IT+ES+ A +GI A+QIISFL Q+AH +
Sbjct: 303 YTDSKLHIATLALFCQMQYRFPNVAVGTITRESIQQALVHGIKADQIISFLTQHAHHNML 362
Query: 202 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 261
+ +P V DQI+LWE + NR+ Y EF S +E YA D LLW + +
Sbjct: 363 SKAHILPPTVTDQIKLWEIERNRLSFQEGILYSEFLSVTDYEKVKKYAEDLGVLLWSNRQ 422
Query: 262 KMRLVVNAEIHMHMREFLRGQ 282
+ +V++ + H +R F + Q
Sbjct: 423 RRLMVIHPDRHDEIRHFWKRQ 443
>gi|451996931|gb|EMD89397.1| hypothetical protein COCHEDRAFT_1141584 [Cochliobolus
heterostrophus C5]
Length = 482
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 130/225 (57%), Gaps = 22/225 (9%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS---- 123
Y+ +TLS Q M++D + +GLV + R F PT+LAT L+ MS + +
Sbjct: 248 YSTSTLSATQLQMLEDLSAMGLV-YRSDRNARTFYPTRLATTLTSDSGSAMSTSSNDIAQ 306
Query: 124 ---------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
+A +GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES
Sbjct: 307 ASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKES 366
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
++ A + GIT+ QIIS+L AHP++ +P +P V DQIRLWE + RVE T +
Sbjct: 367 VHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMR 426
Query: 235 EFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE-IHMHMRE 277
EF S + +YA L+W+ D+ + V + E I ++R+
Sbjct: 427 EFGSDAEYRDVLNYASALGVLVWQNDANRCFFVSHVEQISAYLRK 471
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 147/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--RDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQVALIALFSEMLYRFPNVVVAQVTRESVQQAIGSGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 172/352 (48%), Gaps = 86/352 (24%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILRSLK---- 64
++ DL+ Y+ QWE L ++ + +R N S + ++ Q G L++ R ++
Sbjct: 134 SIADLDEYSRRQWEGVLGYMVGTGGLGMQRDVNLSKGVKQLLQAGHLVEIRDRRVEITKD 193
Query: 65 ---FLCQGI--------------LEAYNLNTLS-----------EIQRS----------- 85
F+ Q + EA ++++ E+ RS
Sbjct: 194 GFAFVLQDVGTQVWHILILYVESAEAIGMDSVEVLKFVFFLSSLELGRSYEKKQMTSNQL 253
Query: 86 -MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA------------------- 125
+ D AD G+V Q+ + + F PT+LAT L+ +DSSA
Sbjct: 254 RTLTDLADFGIV-YQESPEATHFYPTRLATTLT---SDSSALSNPIAGSLSGPTGTASNK 309
Query: 126 RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITA 185
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A E GITA
Sbjct: 310 AGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVEMGITA 369
Query: 186 EQIISFLQQNAHPRV----ADR---------IPSVPENVCDQIRLWESDLNRVEMTPAHY 232
+QIIS+L +AHP++ A R + +P V DQIRLW+ + +RV+ TP
Sbjct: 370 DQIISYLSTHAHPQMRKHNASRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKATPGFL 429
Query: 233 YEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 283
+++F S +EA C YA + L+W+ D K+M V H + FLR +
Sbjct: 430 FKDFVSLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSRK 478
>gi|156057729|ref|XP_001594788.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980]
gi|154702381|gb|EDO02120.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 420
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 134/230 (58%), Gaps = 24/230 (10%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------S 119
AY+ TL++ Q +M+ + D GL+ L +F PT+LAT L+ +
Sbjct: 192 AYSTTTLTDAQHNMLGNLIDFGLIYLPPSAPTQFF-PTRLATTLTSDASALRTVSAGFDA 250
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
+ S+A ++GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A
Sbjct: 251 ASKSAANQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAI 310
Query: 180 ENGITAEQIISFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 233
+GIT++QII++L +AHP++ A P +P V DQIRLW+ + R++ P +
Sbjct: 311 SHGITSDQIITYLSTHAHPQLVKASTAAHGGPVLPPTVVDQIRLWQLENERMKAVPGFLF 370
Query: 234 EEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 282
+EF + +E YA + L+W+ D+K+M V E +R++++ +
Sbjct: 371 KEFDGQKEYEGCAKYAEEVGVLVWKNDAKRMFFVTRVE---QLRDYIKAR 417
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 138/241 (57%), Gaps = 17/241 (7%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S+L L F G Y+ ++ S ++ + GLV Q+ RKE F PT+LA N++
Sbjct: 254 SMLFQLSFSTLG--RDYSSEGMNSQMLSFLQHLREFGLV-FQRKRKEGRFYPTRLALNVT 310
Query: 118 -------MSLTDSSARKE-GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
M+++D A ++ G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG
Sbjct: 311 SKEAATTMTVSDEEAMQDSGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGV 370
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLN 223
+T++S+ A GITAEQI+S+LQQ AHP V I S +P V DQI+LWE + N
Sbjct: 371 LTRDSVRQALRGGITAEQIVSYLQQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERN 430
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
R T Y +F S++ F DYA+ L+W++ + +VV H ++ + + +
Sbjct: 431 RFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNERTRTMVVQKHGHDDVKRYWKKYS 490
Query: 284 K 284
K
Sbjct: 491 K 491
>gi|451847848|gb|EMD61155.1| hypothetical protein COCSADRAFT_97372 [Cochliobolus sativus ND90Pr]
Length = 482
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/225 (36%), Positives = 129/225 (57%), Gaps = 22/225 (9%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS---- 123
Y+ +TLS Q M++D + +GLV + R F PT+LAT L+ MS +
Sbjct: 248 YSTSTLSATQLQMLEDLSAMGLVYRSE-RNARTFYPTRLATTLTSDSGSAMSASSKDIAQ 306
Query: 124 ---------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
+A +GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES
Sbjct: 307 ASTSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKES 366
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYE 234
++ A + GIT+ QIIS+L AHP++ +P +P V DQIRLWE + RVE T +
Sbjct: 367 VHKAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMR 426
Query: 235 EFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE-IHMHMRE 277
EF S + +YA L+W+ D+ + V + E I ++R+
Sbjct: 427 EFGSDAEYRDVLNYASALGVLVWQNDANRCFFVSHVEQISAYLRK 471
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/348 (29%), Positives = 163/348 (46%), Gaps = 80/348 (22%)
Query: 12 LEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQG 69
+ DL+ YA QWE L ++ ++ +R N S + ++ Q G L++ R ++ G
Sbjct: 139 IHDLDEYARRQWEGVLGYMVGTSGLGIQRDVNLSKGVKQLLQAGHLVEIRDRRVEITQDG 198
Query: 70 --------------------------------------------ILEAYNLNTLSEIQRS 85
+ ++Y L+ Q
Sbjct: 199 FAFVLQDVGTQVWHILILYVESAEAIGMDSVEVLSFIFLLSSLELGKSYEKKHLTSNQLR 258
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT----------------DSSARKEG 129
+ D AD G+V Q + S F PT+LAT L+ + DS+ G
Sbjct: 259 TLTDLADFGIV-YQDSPEASHFYPTRLATTLTSDSSALSNPISGALSDPDGGDSNQPGSG 317
Query: 130 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 189
F+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T++S+ A E GITA+QII
Sbjct: 318 FIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKVTRQSIRRAIEMGITADQII 377
Query: 190 SFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLNRVEMTPAHYYEEF 236
S+L +AHP++ A PSV P V DQIRLW+ + +RV+ T +++F
Sbjct: 378 SYLATHAHPQMRKHNVARSTSNQAGMPPSVLPPTVVDQIRLWQLERDRVKATAGFLFKDF 437
Query: 237 PSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 283
S +EA C YA + L+W+ D K+M V H + FLR +
Sbjct: 438 VSLAEYEAPCRYAEEIGVLIWKSDRKRMFFVTR---HEQVAAFLRSRK 482
>gi|347830304|emb|CCD46001.1| similar to RNA polymerase II transcription factor B subunit 2
[Botryotinia fuckeliana]
Length = 471
Score = 147 bits (371), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 134/231 (58%), Gaps = 24/231 (10%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------S 119
AY+ TL+E Q+ M+ + DLGL+ L +F PT+LAT L+ +
Sbjct: 243 AYSTKTLTEAQKGMLANLIDLGLIYLPPSAPTQFF-PTRLATTLTSDASALRTVAAGFDA 301
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
+ S+A ++GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A
Sbjct: 302 ASKSAASQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAI 361
Query: 180 ENGITAEQIISFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 233
+GIT++QII++L +AHP++ + P +P V DQIRLW+ + R++ P
Sbjct: 362 AHGITSDQIITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLM 421
Query: 234 EEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQN 283
++F ++ +E YA + L+W+ D+K+M V E +R++ + +
Sbjct: 422 KDFETQKEYEGCAKYAEEVGVLVWKSDAKRMFFVTRVE---QLRDYFKAKK 469
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 147 bits (370), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 133/228 (58%), Gaps = 23/228 (10%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD--------- 122
++Y+ TLS QR+M+K D GLV + +F PT+L+T L+ +
Sbjct: 189 KSYSTATLSASQRAMLKYLVDFGLVYSPSSTPQQFF-PTRLSTTLTSDASGLRSVSAGFD 247
Query: 123 ----SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 178
S + +GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G +T++S+ NA
Sbjct: 248 DALKSESGTKGFIIIETNYRLYAYTNSPLQIAVLALFTKMGVRYPNMVTGRVTRKSVANA 307
Query: 179 FENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCDQIRLWESDLNRVEMTPAHYY 233
+GIT++QIIS+L+ +AHP++ P +P V DQIRLW+ + R++ T +
Sbjct: 308 ISHGITSDQIISYLRAHAHPQLVKAAAVNGNPVLPPTVVDQIRLWQIENERMKATAGFLF 367
Query: 234 EEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLR 280
+EF ++ +E YA + L+W+ D+K+M V H +R++L+
Sbjct: 368 KEFETQKEYEGCARYADENGVLVWKNDAKRMFFVTR---HEQLRDYLK 412
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 126/204 (61%), Gaps = 6/204 (2%)
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIP---TKLATNLSMSLTDSSARKEGFVVVETNFRM 139
Q ++ +LG++ +++ + +F+ T LATN ++ T S G V+VETNFR+
Sbjct: 262 QHDLLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSSEKASNGKVIVETNFRV 321
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A ++GITA QIISFL+ NAHP+
Sbjct: 322 YAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGALQHGITAAQIISFLRANAHPQ 381
Query: 200 -VADRIP--SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
VA P +P V DQIRLWE + R+++ A+ Y F S D + YA++R LL
Sbjct: 382 CVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSHFESDDEYHGVVRYAQERGILL 441
Query: 257 WEDSKKMRLVVNAEIHMHMREFLR 280
W + ++ ++VN E H +R++ +
Sbjct: 442 WANPQQKLVIVNEEGHEAVRQWYK 465
>gi|154308354|ref|XP_001553513.1| hypothetical protein BC1G_08237 [Botryotinia fuckeliana B05.10]
Length = 410
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 134/230 (58%), Gaps = 24/230 (10%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------S 119
AY+ TL+E Q+ M+ + DLGL+ L +F PT+LAT L+ +
Sbjct: 182 AYSTKTLTEAQKGMLANLIDLGLIYLPPSAPTQFF-PTRLATTLTSDASALRTVAAGFDA 240
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
+ S+A ++GF+++ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A
Sbjct: 241 ASKSAASQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAI 300
Query: 180 ENGITAEQIISFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYY 233
+GIT++QII++L +AHP++ + P +P V DQIRLW+ + R++ P
Sbjct: 301 AHGITSDQIITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLM 360
Query: 234 EEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 282
++F ++ +E YA + L+W+ D+K+M V E +R++ + +
Sbjct: 361 KDFETQKEYEGCAKYAEEVGVLVWKSDAKRMFFVTRVE---QLRDYFKAK 407
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 146 bits (369), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 35/244 (14%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL---SMSLTDS---- 123
++Y+ L+ Q + D D G+V ES F PT+LAT L SM+L+ S
Sbjct: 242 QSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSSISGN 301
Query: 124 ------------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
A GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T
Sbjct: 302 LAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLT 361
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLW 218
++S+ A E GITA+QIIS+L +AHP++ A + SV P V DQIRLW
Sbjct: 362 RQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPTVVDQIRLW 421
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ + +R++ TP +++F S FEA C YA + L+W+ K+ V H + F
Sbjct: 422 QLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAF 479
Query: 279 LRGQ 282
LR +
Sbjct: 480 LRSR 483
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 163/323 (50%), Gaps = 57/323 (17%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK-------------------- 48
L+AY++ +WEC L ++ S Q E + + +MK
Sbjct: 152 LDAYSLERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEEDGSPVITRQGFQFLLL 211
Query: 49 ----------------VFQRGLLIQSILRSLKFLCQ----GILEAYNLNTLSEIQRSMIK 88
V QRGL S++ L FL Q + + Y+ +S ++
Sbjct: 212 DRQAQVWHFLLQYLDTVEQRGL---SLVECLTFLFQLSFSTLGKDYSTEGMSPGLLIFLQ 268
Query: 89 DFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVETNFRMYAYS 143
+ GLV Q+ RK F PT+LA N++ S + E G+++VETN+R+YAY+
Sbjct: 269 HLREFGLV-YQRKRKAGRFYPTRLALNITCSQGPETRILEEDTPKGYIIVETNYRVYAYT 327
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--A 201
S L ++ LF+++ Y+ PNL+VG IT++S+ A + GITA+QII +L+Q+AHP++
Sbjct: 328 DSNLQVALIGLFTELMYRFPNLVVGVITRDSIRQALKGGITADQIIGYLKQHAHPQMLEG 387
Query: 202 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 261
+ +P V DQI+LWE + NR+ + Y +F S+ F +YA+ L+W + +
Sbjct: 388 EAKHPLPPTVVDQIKLWEIERNRLTYSEGVLYSQFLSQADFNILKEYAQSNGHLIWCNKE 447
Query: 262 KMRLVVNAEIHMHMREFLRGQNK 284
K L++N H +++F + +K
Sbjct: 448 KRTLIINKSAHDDVKKFWKRYSK 470
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/360 (29%), Positives = 167/360 (46%), Gaps = 83/360 (23%)
Query: 4 GITARLP-----TLEDLEAYAIGQWECFLLQLISSAQ--AERPTNFSSSMMKVFQRGLLI 56
G+ ++LP T+ DL+ YA QWE L ++ ++ +R S + ++ Q G L+
Sbjct: 104 GVLSQLPDHPPVTIADLDEYARRQWEGVLGYMVGTSGLGIQRDVTLSKGVKQLLQAGHLV 163
Query: 57 QSILRSLKFLCQG--------------------------------------------ILE 72
+ R ++ G + +
Sbjct: 164 EIRDRRVEITQDGFAFVLQDVSTQVWHILILYVESAEAIGMDSVEVLSFVFLLSSLELGK 223
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-----------SMSL- 120
+Y L+ Q + D AD G+V Q + F PT+LAT L S SL
Sbjct: 224 SYEKQHLTSNQLRTLTDLADFGIV-YQHSPDATHFYPTRLATTLTSDASSLSNPISGSLS 282
Query: 121 ----TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
T S+ GF++VETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 283 GPDGTSSAKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVR 342
Query: 177 NAFENGITAEQIISFLQQNAHPRV------------ADRIPSV-PENVCDQIRLWESDLN 223
A E GITA+QIIS+L +AHP++ A PSV P V DQIRLW+ + +
Sbjct: 343 RAIEMGITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLWQLERD 402
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
RV+ T +++F S +E C YA + L+W+ ++K V H + FLR +
Sbjct: 403 RVKATAGFLFKDFASLAEYEDPCRYAEEIGVLVWKSNRKRMFFVTR--HEQVAAFLRSRK 460
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 148/276 (53%), Gaps = 32/276 (11%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + + +A R N + +FQ L F G Y+ LS +
Sbjct: 238 FMLQYLDTCEA-RGLNLPECLSMLFQ-----------LSFSTLG--RDYSSEGLSPGLLT 283
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLA-----------TNLSMSLTDSSARKEGFVVVE 134
++ + GLV Q+ RKE F PT+LA T L+ ++ + +G+++VE
Sbjct: 284 FLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNATHATTLAQDQESNATKDKGYIIVE 342
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TN+R+YAY+ S L +L LF+++ Y+ PNL+VG ++++S+ AF GITAEQIIS+L+Q
Sbjct: 343 TNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLSRDSVRQAFRGGITAEQIISYLEQ 402
Query: 195 NAHP------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
+AHP + + S+P V DQI+LWE++ NR T Y +F S+ F DY
Sbjct: 403 HAHPTMLTVEQAINSKSSLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQADFITLRDY 462
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
A+ ++W++ + +VV H +++F + +K
Sbjct: 463 AQSIGVMIWQNERIRTMVVTKNGHDDVKKFWKRYSK 498
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/243 (35%), Positives = 129/243 (53%), Gaps = 33/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-----------SMSL 120
E Y + L+E QR ++ DF D GL+ ++ + F T LA NL +SL
Sbjct: 244 EYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDR-FYTTSLAVNLIFGGSTGQKRSHVSL 302
Query: 121 TDSSA---------------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
T S A + VVVETNF++YAY+TS LH +L +F I
Sbjct: 303 TSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTSTLHVAMLSVFVDIV 362
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWE 219
+LPNL +G IT+ESL +A +GI+A+QI FL ++AHP++ P +PEN+ DQI LWE
Sbjct: 363 ARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWE 422
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ NRV+ ++ F +++ +E+ DYA+D L W D RL + +R ++
Sbjct: 423 RERNRVQFMEGILFDGFNTKEDYESVRDYAKDLKVLTWSDPIHFRLSITTAGIDDVRHYI 482
Query: 280 RGQ 282
+ Q
Sbjct: 483 QSQ 485
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 132/244 (54%), Gaps = 35/244 (14%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL---SMSLTD----- 122
++Y+ L+ Q + D D G+V ES F PT+LAT L SM+L+
Sbjct: 242 QSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMALSSPISGN 301
Query: 123 -----------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
+ A GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T
Sbjct: 302 LAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKLT 361
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV-----------ADRIPS--VPENVCDQIRLW 218
++S+ A E GITA+QIIS+L +AHP++ +P+ +P V DQIRLW
Sbjct: 362 RQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLPASVLPPTVVDQIRLW 421
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ + +R++ TP +++F S FEA C YA + L+W+ K+ V H + F
Sbjct: 422 QLERDRLKATPGFLFKDFASSAEFEAPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAF 479
Query: 279 LRGQ 282
LR +
Sbjct: 480 LRSR 483
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 134/241 (55%), Gaps = 17/241 (7%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL- 116
S+L L F G Y+ +S ++ + GLV Q+ RKE F PT+LA N+
Sbjct: 253 SMLFQLSFSTLG--RDYSSEGMSHQMLMFLQHLREFGLV-FQRKRKEGRFYPTRLALNVT 309
Query: 117 -------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
S S D ++ G++VVETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG
Sbjct: 310 NKDAAQASTSADDERMQERGYIVVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGV 369
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDLN 223
+T++S+ A GITAEQI+S+L+Q AHP V I S +P V DQI+LWE + N
Sbjct: 370 LTRDSVRQALRGGITAEQIVSYLEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWELERN 429
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
R T Y +F S+ F DYA+ + L+W++ + +VV H ++ + + +
Sbjct: 430 RFTYTEGVVYNQFLSQTDFVTLRDYAQSINMLVWQNERTRTMVVQKNGHDDVKRYWKKYS 489
Query: 284 K 284
K
Sbjct: 490 K 490
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 98/328 (29%), Positives = 162/328 (49%), Gaps = 63/328 (19%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRGL------------------- 54
L+AYA+ +WEC L ++ S Q E S+ +++ Q GL
Sbjct: 279 LDAYALERWECVLHYMVGSTQTE---GISADAVRILLQAGLMNRDAEDGTAVITRAGFQF 335
Query: 55 LIQSILRSLKFLCQGILEAYNLNTLSEIQ----------RSMIKDFA------------- 91
L+ S + + Q L +LS + ++ KD++
Sbjct: 336 LLLSTAKQVWLFLQHYLHTAEKRSLSAAECLAFLYQLSFSTLGKDYSTEGMSNNMLVFLQ 395
Query: 92 ---DLGLVKLQQGRKESWFIPTKLATNLSMSLTDS-----SARKEGFVVVETNFRMYAYS 143
+ GLV Q+ RK F PT+LA N++ + D +A G+++ ETN+R+YAY+
Sbjct: 396 HLREFGLV-YQRKRKAGRFYPTRLALNIT-CVKDGVAPLQTAASSGYIIAETNYRVYAYT 453
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--A 201
TS L +L LF+++ Y+ PN++VG +T+ES+ A GI+A+QII++L+Q++HP++ +
Sbjct: 454 TSALQVALLGLFTELVYRFPNVVVGVLTRESVRAALRGGISAQQIITYLEQHSHPQMLKS 513
Query: 202 DR-----IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
D+ S+P V DQIRLWES+ NR T Y +F S+ F DY R L+
Sbjct: 514 DQGGIRSSSSLPPTVLDQIRLWESERNRFTYTEGVVYNQFLSQAEFNVLRDYGRSSGALV 573
Query: 257 WEDSKKMRLVVNAEIHMHMREFLRGQNK 284
W + +VV H ++ + + +K
Sbjct: 574 WAADRTRTMVVARAAHDDVKRYWKRYSK 601
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 137/234 (58%), Gaps = 16/234 (6%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
+ L L FL G AY +N L+E ++S++ D GLV ++ + E F PT+L +L+
Sbjct: 226 AFLFKLSFLSLG--SAYYVNDLTEDEKSLLFDLRQFGLVYIRSEKSE-IFYPTRLIISLT 282
Query: 118 MSLT-----------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
T ++ +++G++++ETNFR+YAY+ S L +L LF K+ Y+LPNL
Sbjct: 283 TGKTVTVIKDLAKEMSNTQKEQGYIILETNFRIYAYTASSLQISLLSLFVKMLYRLPNLS 342
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVE 226
VG +T+ES+ AF +GITA+QI+ F++QN HP + PE V +QIR+WE++ NR+
Sbjct: 343 VGILTRESIRTAFLHGITADQIVDFIKQNGHPNMLK--VGAPEIVFEQIRIWENERNRIL 400
Query: 227 MTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
A ++ FP+++ F YA+D S +W K LVV+ ++ ++R
Sbjct: 401 YKKAVLFDSFPTQESFNMTLQYAKDLSFYMWASEAKKVLVVSDNGFDAIKNYIR 454
>gi|320167307|gb|EFW44206.1| transcription factor tfb2 [Capsaspora owczarzaki ATCC 30864]
Length = 406
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 145/261 (55%), Gaps = 7/261 (2%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
FLLQ +++ T + +S+ K + ++L L F G+ Y + L+E Q
Sbjct: 124 FLLQDVATQVWYFLTQYLNSLQKRGADPVEALALLFRLSFSTVGM--DYPVEGLTEGQLD 181
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
+++ ++GLV ++ R F PT LA NL+ + +A +G++VVETNFR+YAY+
Sbjct: 182 LLQHLREIGLV-FRRKRTSRRFYPTPLAINLASGSAKNLDAADVKGYIVVETNFRIYAYT 240
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S L +L LF + Y+ PN++ G ++++S+ A G+TAEQ+I FL+ +AHP++ R
Sbjct: 241 DSPLQLALLSLFVDLRYRFPNMVCGLLSRDSVRKALVKGLTAEQMIRFLRTHAHPQMRSR 300
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +PE + DQ+RLWE + NR+ + PA YE F ++ + Y RD L S+
Sbjct: 301 TPVLPETISDQLRLWELERNRLRVLPAVLYERFSNQREHDLLHHYGRDLGVELAHSSQH- 359
Query: 264 RLVVNAEIHMHMREFLRGQNK 284
+VV E H ++ F + +
Sbjct: 360 -IVVTFEGHEQIKTFWQAHRQ 379
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 89/260 (34%), Positives = 145/260 (55%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
+L + LFS++ Y+ PN++V +T+ S+ A +GITA+QI+ FL+ A P + +
Sbjct: 321 EPELQIARIALFSEMLYRFPNMVVPQVTRGSVQQAIASGITAQQIVHFLRTRADPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 129/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMS 119
++Y L+ Q + D D G+V +E+ F PT+LAT L S S
Sbjct: 241 QSYEKKHLTSTQLKTLADLTDFGIVYQHPPHQEATRFYPTRLATTLTSDSITLGSSISSS 300
Query: 120 LTDSSARK--------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
LT S GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T
Sbjct: 301 LTAPSGGPAAVSNEPGTGFIIIETNYRLYAYTSSPLQISLISLFTTLKYRFPNLITGKLT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV-----------ADRIPSV-PENVCDQIRLWE 219
++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+
Sbjct: 361 RQSIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSGANPAGVPAVLPPTVVDQIRLWQ 420
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ +R++ TP +++F S FE C YA + LLW+ K+ V H + +L
Sbjct: 421 LERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLLWKSEKRRMFFVTR--HEQVAAYL 478
Query: 280 RGQ 282
R +
Sbjct: 479 RSR 481
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------- 118
++Y L+ Q + D AD G+V Q+ + F PT+LAT L+
Sbjct: 241 KSYEKKQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSL 299
Query: 119 ---SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
+ T SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 300 SGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSV 359
Query: 176 YNAFENGITAEQIISFLQQNAHPRVADR-------------IPSVPENVCDQIRLWESDL 222
A E GITA+QIIS+L +AHP++ + +P V DQIRLW+ +
Sbjct: 360 RRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLER 419
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+RV+ T + +F + +EA C YA + L+W+ D K+M V H + FL+
Sbjct: 420 DRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKS 476
Query: 282 QNK 284
+ K
Sbjct: 477 RRK 479
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 126/214 (58%), Gaps = 15/214 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL--------SMSLTDSSARKEGFVVVETN 136
+ ++ + GLV Q+ RKE F PT+LA N+ S S + ++ G++VVETN
Sbjct: 277 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTNKDAAQASTSADEERMQERGYIVVETN 335
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q A
Sbjct: 336 YRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQYA 395
Query: 197 HPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 250
HP V I S +P + DQI+LWE + NR T Y +F S++ F DYA+
Sbjct: 396 HPNMKLVESAIQSKSCLPPTIVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLRDYAQ 455
Query: 251 DRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 456 SINMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 489
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 130/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------- 118
++Y L+ Q + D AD G+V Q+ + F PT+LAT L+
Sbjct: 230 KSYEKKQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSL 288
Query: 119 ---SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
+ T SS GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+
Sbjct: 289 SGPTGTSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSV 348
Query: 176 YNAFENGITAEQIISFLQQNAHPRVADR-------------IPSVPENVCDQIRLWESDL 222
A E GITA+QIIS+L +AHP++ + +P V DQIRLW+ +
Sbjct: 349 RRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLER 408
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+RV+ T + +F + +EA C YA + L+W+ D K+M V H + FL+
Sbjct: 409 DRVKATHGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKS 465
Query: 282 QNK 284
+ K
Sbjct: 466 RRK 468
>gi|396459783|ref|XP_003834504.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
gi|312211053|emb|CBX91139.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
Length = 483
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 150/315 (47%), Gaps = 69/315 (21%)
Query: 11 TLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSIL---------- 60
++E L+ Y+ GQWE L L+S A R + S + + + LL++ L
Sbjct: 138 SVEFLDEYSRGQWEGILYYLVSGAAGLRSDSISRAEVGPGTKKLLMEGDLVRVIHGTPRI 197
Query: 61 --RSLKFLCQ--------------------GILEA-----------------YNLNTLSE 81
F+ Q G+ E Y+++TLS+
Sbjct: 198 TKDGFSFVLQETNAQVWSLLIVYLKMVHELGMSETEVLSFLFMLGSLDLGRDYSISTLSD 257
Query: 82 IQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS------------ 123
Q M+ D + +GLV + + F PT+LAT L+ MS + +
Sbjct: 258 TQLQMLDDLSAMGLV-YRTSKDARTFYPTRLATTLTSDSGSAMSASSNDIAQANQGNAGT 316
Query: 124 -SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
+ +GF+++ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ A G
Sbjct: 317 LATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHKAVSAG 376
Query: 183 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 242
IT+ QIIS+L AHP++ + +P V DQIRLWE + RVE+TP ++F S +
Sbjct: 377 ITSAQIISYLSTYAHPQMQKNVSFIPPTVMDQIRLWEYEGERVEVTPGFLMKDFGSDAEY 436
Query: 243 EAACDYARDRSGLLW 257
YA L+W
Sbjct: 437 RDVLGYADALGVLVW 451
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 20/236 (8%)
Query: 63 LKFL-----CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
L+FL CQ + Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL
Sbjct: 234 LRFLFQISYCQ-VNAYYPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLI 291
Query: 118 MSLTDSSARKEGFV-------------VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
T +S E V +VETNF++YAY+TS LH +L +F I +LPN
Sbjct: 292 FGGTTTSNYSETQVARPRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPN 351
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
L +G IT+ESL +A +GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR
Sbjct: 352 LAIGFITRESLRSALVHGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNR 411
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
++ ++ F S++ FE +YA+ + L W D ++L +++ +R F++
Sbjct: 412 IKFLEGILFDGFNSKEEFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 467
>gi|440636738|gb|ELR06657.1| hypothetical protein GMDG_00274 [Geomyces destructans 20631-21]
Length = 470
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 129/238 (54%), Gaps = 23/238 (9%)
Query: 65 FLCQGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 121
F G LE AY+ TLS Q+SM+ AD GLV PT+LAT L+ S +
Sbjct: 235 FFLLGSLELGLAYSTTTLSTTQKSMLPILADFGLVYSPPSSSSF--FPTRLATTLTSSAS 292
Query: 122 ----------------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
SS GF+V+ETN+R+YAY++S L +L LF+K+ + PN+
Sbjct: 293 ALRSIASGFSAAAASPASSGGTTGFIVIETNYRLYAYTSSPLQIAVLALFAKLSTRYPNM 352
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 225
+ G +T++S+ A E+GITA+QIIS+L +AHP++ + P +P V DQIRLW+ + R+
Sbjct: 353 VSGRVTRDSVRGAIEHGITADQIISYLTTHAHPQLRRKSPVLPPTVVDQIRLWQIENERM 412
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
+ T +++F S +E YA + L+W K V H +R++++ +
Sbjct: 413 KATAGFLFKDFASLAEYEGCVRYADEIGVLVWRSDAKRNFFVTK--HEQLRDYIKSRK 468
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 126/220 (57%), Gaps = 14/220 (6%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFV-- 131
Y + L++ Q+ ++ DF + GL+ ++ + F T LA NL T +S E V
Sbjct: 296 YPVQDLTKTQQLLLTDFNNFGLLYRKRSNSDR-FYTTSLAINLIFGGTTTSNYSETQVAR 354
Query: 132 -----------VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 180
+VETNF++YAY+TS LH +L +F I +LPNL +G IT+ESL +A
Sbjct: 355 PRMSSMSDLLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALV 414
Query: 181 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 240
+GI+A+QI FL ++AHPR+ P VPEN+ DQI LWE + NR++ ++ F S++
Sbjct: 415 HGISAQQIYDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKE 474
Query: 241 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
FE +YA+ + L W D ++L +++ +R F++
Sbjct: 475 EFEQVREYAQKQRFLTWTDPIHLKLAISSNGIESVRNFIQ 514
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 128/241 (53%), Gaps = 33/241 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL-------------- 116
++Y N L+ Q + D D G+V + + F PT+LAT L
Sbjct: 242 QSYEKNDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMPGPVSGE 301
Query: 117 ------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
S T ++ GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 302 PVVPAPSTGPTSATDGGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 361
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 222
T++S+ A E GITA+QI+S+L +AHP++ S +P V DQIRLW+ +
Sbjct: 362 TRQSVRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTSNVAASILPPTVVDQIRLWQLER 421
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLRG 281
+R++ T ++EF + FEA C YA + L+W DS++M V H + FLR
Sbjct: 422 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRS 478
Query: 282 Q 282
+
Sbjct: 479 R 479
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 25 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 83
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 84 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 143
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 144 AHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYA 203
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 204 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 238
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-------------- 116
++Y L+ Q + D D G+V +E+ F PT+LAT L
Sbjct: 241 QSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSS 300
Query: 117 --SMSLTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
+ +L S++ E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T
Sbjct: 301 LTAPNLVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVADR-----------IPSV-PENVCDQIRLWE 219
++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+
Sbjct: 361 RQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQ 420
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ +R++ TP +++F S FE C YA + L+W+ +K V H + +L
Sbjct: 421 LERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVATYL 478
Query: 280 RGQ 282
R +
Sbjct: 479 RSK 481
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 131/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-------------- 116
++Y L+ Q + D D G+V +E+ F PT+LAT L
Sbjct: 241 QSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSS 300
Query: 117 --SMSLTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
+ +L S++ E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T
Sbjct: 301 LTAPNLVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVADR-----------IPSV-PENVCDQIRLWE 219
++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+
Sbjct: 361 RQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQ 420
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ +R++ TP +++F S FE C YA + L+W+ +K V H + +L
Sbjct: 421 LERDRIKATPGFLFKDFVSLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAAYL 478
Query: 280 RGQ 282
R +
Sbjct: 479 RSK 481
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 151/291 (51%), Gaps = 48/291 (16%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +T + +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 T-------------------------------SKLHCEILRLFSKIEYQLPNLIVGAITK 172
S+L ++ LFS++ Y+ PN++V IT+
Sbjct: 321 GEVGGMRMGIGMLEGRNCGFFGIILFFSLATESELQIALIALFSEMLYRFPNMVVAQITR 380
Query: 173 ESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHY 232
ES+ A NGITA+QII FL+ AHP + +IP +P + DQIRLWE + +R+ +
Sbjct: 381 ESVQQAIANGITAQQIIHFLKTRAHPVMLKQIPVLPPTITDQIRLWELERDRLRFSEGVL 440
Query: 233 YEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
Y +F S+ FE +AR+ L++E++ K +VV H ++ F + Q
Sbjct: 441 YNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSDVKRFWKRQK 491
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 135/242 (55%), Gaps = 18/242 (7%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S+L L F G Y+ +++ ++ + GLV Q+ RKE F PT+LA N++
Sbjct: 256 SMLFQLSFSTLG--RDYSSEGMNKQMLDFLQHLREFGLV-YQRKRKEGRFYPTRLALNVT 312
Query: 118 ---------MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 168
++ + ++ G++VVETN+R+YAY+ S L +L LF+++ Y+ PNL+VG
Sbjct: 313 SKEAAVAATLTTDEEGVQESGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVG 372
Query: 169 AITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIRLWESDL 222
+T++S+ A GITAEQI+S+L+Q AHP V I S +P V DQI+LWE +
Sbjct: 373 VLTRDSVRQALRGGITAEQIVSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWEMER 432
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
NR T Y +F S++ F DYA+ L+W++ + +VV H ++ + +
Sbjct: 433 NRFTYTEGVVYNQFLSQNDFVTLRDYAQSIHVLVWQNERTRTMVVQKNGHDDVKRYWKKY 492
Query: 283 NK 284
+K
Sbjct: 493 SK 494
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 50/256 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLT 121
++Y L+ LS+ Q SM+ D D GLV Q + F PT+LAT L SM+L
Sbjct: 237 KSYYLSGLSDTQVSMLADLRDYGLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALD 295
Query: 122 DS--------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 173
+ S +G +++ETNF++YAY+ S L IL LF + + N++ G IT+E
Sbjct: 296 QAVDTSNGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRE 355
Query: 174 SLYNAFENGITAEQIISFLQQNAHPRV-------------------------------AD 202
S+ NA NGIT++QII+FL+ +AHP++
Sbjct: 356 SIRNALYNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQH 415
Query: 203 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
++ +P V DQI+LW+ +L+R++ + ++EF S+ F+ C+YA D L+W D K
Sbjct: 416 KLEILPPTVVDQIKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTK 475
Query: 263 MRLVVNAEIHMHMREF 278
MR V + + +F
Sbjct: 476 MRFFVTKDGISQVADF 491
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 50/256 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLT 121
++Y L+ LS+ Q SM+ D D GLV Q + F PT+LAT L SM+L
Sbjct: 237 KSYYLSGLSDTQVSMLADLRDYGLV-YQYSDQSDRFYPTRLATTLTSESASLKTPSMALD 295
Query: 122 DS--------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 173
+ S +G +++ETNF++YAY+ S L IL LF + + N++ G IT+E
Sbjct: 296 QAVDTSNGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRE 355
Query: 174 SLYNAFENGITAEQIISFLQQNAHPRV-------------------------------AD 202
S+ NA NGIT++QII+FL+ +AHP++
Sbjct: 356 SIRNALYNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQH 415
Query: 203 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
++ +P V DQI+LW+ +L+R++ + ++EF S+ F+ C+YA D L+W D K
Sbjct: 416 KLEILPPTVVDQIKLWQLELDRIQAFEGYLFKEFASQQEFDVLCNYASDVGVLIWSDRTK 475
Query: 263 MRLVVNAEIHMHMREF 278
MR V + + +F
Sbjct: 476 MRFFVTKDGISQVADF 491
>gi|225555033|gb|EEH03326.1| RNA pol II transcription initiation subunit [Ajellomyces capsulatus
G186AR]
Length = 485
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 34/243 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMS 119
++Y L+ Q + D D G+V +E+ F PT+LAT L S S
Sbjct: 241 QSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSS 300
Query: 120 LT--------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
LT S+ GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T
Sbjct: 301 LTAPNGVPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVAD-----------RIPSV-PENVCDQIRLWE 219
++S+ A E GITA+QIIS+L +AHP++ +P+V P V DQIRLW+
Sbjct: 361 RQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKAGANPVGVPTVLPPTVVDQIRLWQ 420
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ +R++ TP +++F + FE C YA + L+W+ +K V H + +L
Sbjct: 421 LERDRIKATPGFLFKDFVNLAEFEGPCRYAEEIGVLVWKSERKRMFFVTR--HEQVAAYL 478
Query: 280 RGQ 282
R +
Sbjct: 479 RSR 481
>gi|295662078|ref|XP_002791593.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279719|gb|EEH35285.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 484
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 33/242 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMS 119
++Y L+ Q + D D G+V +E+ F PT+L T L S S
Sbjct: 241 QSYEKKHLTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTS 300
Query: 120 LT--------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
LT +SS GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT
Sbjct: 301 LTGPSGPTAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKIT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVADR----------IPSV-PENVCDQIRLWES 220
++S+ A E GITA+QIIS+L +AHP++ P+V P V DQIRLW+
Sbjct: 361 RQSIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQL 420
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ +R++ TP +++F S F+ C YA + L+W+ K+ V H + +LR
Sbjct: 421 ERDRIKATPGFLFKDFVSLAEFDGPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAYLR 478
Query: 281 GQ 282
+
Sbjct: 479 SR 480
>gi|346464903|gb|AEO32296.1| hypothetical protein [Amblyomma maculatum]
Length = 436
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/239 (33%), Positives = 133/239 (55%), Gaps = 17/239 (7%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + + ++ R N + +FQ L FL G + Y+ +SE
Sbjct: 211 FVLQYLDTIES-RGLNLVECLTFLFQ-----------LSFLTLG--KDYSTEGMSESLLV 256
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR--KEGFVVVETNFRMYAYS 143
++ + GLV Q+ R+ F PT+LA NL+ L +++ R + G+++VETN+R+YAY+
Sbjct: 257 FLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLRETNLRSYEAGYIMVETNYRVYAYT 315
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L +L LF ++ Y+ PNL+V +T+ES+ A +GIT+ QII FL+ AHP +
Sbjct: 316 NSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQIIKFLRMYAHPEALKQ 375
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
P +P + DQ+RLWE + +R Y +F S+ F+ +YA D L+W++ K
Sbjct: 376 TPVIPATIMDQLRLWELERDRFVYREGVLYSQFISQSDFQLLRNYASDLGVLIWDNPSK 434
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 134/248 (54%), Gaps = 24/248 (9%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
S+L L F G Y+ +S + ++ + GLV Q+ RKE F PT+LA N++
Sbjct: 265 SMLFQLSFSTLG--RDYSSEGMSHQMLAFLQHLREFGLV-FQRKRKEGRFYPTRLALNVT 321
Query: 118 -------------MSLTDSSARKE--GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
MS ++ R + G++VVETN+R+YAY+ S L +L LF+++ Y+
Sbjct: 322 SKESADATTAIVTMSASEEEERMQDRGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRF 381
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPS---VPENVCDQIR 216
PNL+VG +T++S+ A GITAEQIIS+L+Q AHP V I S +P V DQI+
Sbjct: 382 PNLVVGVLTRDSVRQALRGGITAEQIISYLEQYAHPNMKLVESAINSKSCLPPTVVDQIK 441
Query: 217 LWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMR 276
LWE + NR T Y +F S F DYA+ L+W++ K +VV H ++
Sbjct: 442 LWEMERNRFTYTEGVVYNQFLSTTDFVTLRDYAQSIQVLVWQNEKTRTMVVQKNGHDDVK 501
Query: 277 EFLRGQNK 284
+ + +K
Sbjct: 502 RYWKKYSK 509
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 134 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 192
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 193 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 252
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 253 AHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYA 312
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 313 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 347
>gi|225682227|gb|EEH20511.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides brasiliensis Pb03]
gi|226289599|gb|EEH45083.1| TFIIH basal transcription factor complex p52 subunit
[Paracoccidioides brasiliensis Pb18]
Length = 484
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 129/242 (53%), Gaps = 33/242 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMS 119
++Y L+ Q + D D G+V +E+ F PT+L T L S S
Sbjct: 241 QSYEKKHLTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTS 300
Query: 120 LT--------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
LT +SS GF+V+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT
Sbjct: 301 LTGPSGPAAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKIT 360
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRVAD----------RIPSV-PENVCDQIRLWES 220
++S+ A E GITA+QIIS+L +AHP++ P+V P V DQIRLW+
Sbjct: 361 RQSIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQL 420
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ +R++ TP +++F S F+ C YA + L+W+ K+ V H + +LR
Sbjct: 421 ERDRIKATPGFLFKDFVSLAEFDGPCRYAEEIGVLVWKSEKRRMFFVTR--HEQVAAYLR 478
Query: 281 GQ 282
+
Sbjct: 479 SR 480
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 283 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 341
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 342 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 401
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 402 AHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYA 461
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 462 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 283 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 341
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 342 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 401
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 402 AHPNMRMVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTLRDYA 461
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 462 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 31/230 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNLS-----MSLTDSSA 125
++Y L+ Q + D D G+V + + F PT+LAT L+ +S T SSA
Sbjct: 241 QSYEKKHLTPDQLRALTDLTDFGIVYQYPSAAEADRFYPTRLATTLTSDSSALSNTMSSA 300
Query: 126 RK-----------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S
Sbjct: 301 LSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQS 360
Query: 175 LYNAFENGITAEQIISFLQQNAHP--RVADRIPS-----------VPENVCDQIRLWESD 221
+ A E GITA+QIIS+L +AHP R D + S +P V DQIRLW+ +
Sbjct: 361 IRRAVEMGITADQIISYLSTHAHPQMRKEDAVKSTSNTAGLPRSVLPPTVVDQIRLWQLE 420
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 270
+R++ TP ++EF S +E C YA + L+W+ D K+M V E
Sbjct: 421 RDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 126/241 (52%), Gaps = 33/241 (13%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-----------SMSLTD 122
Y + L+E QR ++ DF D GL+ ++ + F T LA NL +SLT
Sbjct: 239 YAVADLTETQRLLLGDFIDFGLL-FRKRQNSDRFYTTSLAVNLIFGGSTGQKRSHVSLTS 297
Query: 123 SSARKEG---------------------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
S A VVVETNF++YAY++S LH +L +F I +
Sbjct: 298 SFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVAMLSVFVDIVAR 357
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221
LPNL +G IT+ESL +A +GI+A+QI FL ++AHP++ P +PEN+ DQI LWE +
Sbjct: 358 LPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPENIADQIYLWERE 417
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 281
NRV+ ++ F +++ +E+ DYA+ L W D RL + +R F++
Sbjct: 418 RNRVQFLEGILFDGFNTKEDYESVRDYAKGLMVLTWSDPIHFRLSIATAGIDEVRHFIQN 477
Query: 282 Q 282
Q
Sbjct: 478 Q 478
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 283 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 341
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 342 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 401
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 402 AHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYA 461
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 462 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 283 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 341
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 342 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 401
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 402 AHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYA 461
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 462 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 496
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 49/257 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT----------------- 114
+AY + LS QR+M++D D GL+ Q + F PT+LAT
Sbjct: 236 KAYKCDQLSNTQRTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALD 294
Query: 115 ------NLSMSLTDSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
N + ++ S + E G +++ETNF++Y+YS S L IL LF ++ +
Sbjct: 295 SVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSR 354
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------VADR 203
N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V +
Sbjct: 355 FANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKET 414
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
+ +P V DQIRLW+ +L+R+ + Y +F S ++ DYA+D LLW++ KK
Sbjct: 415 LQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKK 474
Query: 264 RLVVNAEIHMHMREFLR 280
V+ E + + +F R
Sbjct: 475 MFFVSTEGNSQVLDFHR 491
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 140 bits (353), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 78/215 (36%), Positives = 124/215 (57%), Gaps = 16/215 (7%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------SMSLTDSSARKEGFVVVET 135
+ ++ + GLV Q+ RKE F PT+LA N+ S+++ + + + G++VVET
Sbjct: 284 TFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYIVVET 342
Query: 136 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQN 195
N+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A GITAEQI+S+L+Q
Sbjct: 343 NYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYLEQY 402
Query: 196 AHPR---VADRIPS---VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
AHP V I S +P V DQI+LWE + NR T Y +F S F DYA
Sbjct: 403 AHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLRDYA 462
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ L+W++ + +VV H ++ + + +K
Sbjct: 463 QSIHMLVWQNERTRTMVVQKNGHDDVKRYWKKYSK 497
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 162/317 (51%), Gaps = 48/317 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 110 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEEDGSPVITQAGFQFLLL 169
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
+ ++ L FL Q + + Y+ +S+ ++
Sbjct: 170 DTSAQVWYFILQYLDTVEARGLDLVECLTFLFQLNFSTLGKDYSTQGMSDGLLMFLQHLR 229
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ +R KE FV+VETN+R+YAY+ S L
Sbjct: 230 EFGLV-YQRKRKAGRFYPTRLALNIATGQDKPISRDLEKERFVIVETNYRVYAYTNSNLQ 288
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD-RIPSV 207
++ LF ++ Y+ PNL+V +T++S+ A ++GITA QI+ +L Q+AH ++ D P++
Sbjct: 289 VALIGLFCELLYRFPNLVVAILTRDSVRAALKSGITAVQIVGYLNQHAHNKMIDPGPPTL 348
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A ++W+ +K +VV
Sbjct: 349 PPTIVDQIKLWENERNRFIFSEGVLYSQFHSQIDFEVLRDHAVSLGVMIWQSDRKRTMVV 408
Query: 268 NAEIHMHMREFLRGQNK 284
H +++F + +K
Sbjct: 409 TKTGHDDVKKFWKRYSK 425
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 31/230 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNL-------------S 117
++Y L+ Q + D D G++ E+ F PT+LAT L S
Sbjct: 241 QSYEKRHLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSNTMSSS 300
Query: 118 MSLTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
+S ++A E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S
Sbjct: 301 LSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQS 360
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADR-----------IPS--VPENVCDQIRLWESD 221
+ A E GITA+QIIS+L +AHP++ IP +P V DQIRLW+ +
Sbjct: 361 IRRAVEMGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLE 420
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 270
+R++ TP ++EF S +E C YA + L+W+ D K+M V E
Sbjct: 421 RDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 470
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 132/239 (55%), Gaps = 37/239 (15%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-------- 125
Y+ + ++ Q + D AD G+V Q+ + F PT+LAT L+ +DSSA
Sbjct: 146 YDKSHMTSNQLRTLADLADFGIV-YQEDADATHFYPTRLATTLT---SDSSALSNPVTGS 201
Query: 126 ----------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+
Sbjct: 202 LTGPVGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSV 261
Query: 176 YNAFENGITAEQIISFLQQNAHPRV---------ADRIPS--VPENVCDQIRLWESDLNR 224
A E GITA+QIIS+L +AHP++ IP+ +P V DQIRLW+ + +R
Sbjct: 262 RRAIEMGITADQIISYLLSHAHPQLRKHSAAQSNGKGIPASVLPPTVTDQIRLWQLERDR 321
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 282
+ T +++F S ++A C YA + L+W+ D K+M V H + FLR Q
Sbjct: 322 LRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSQ 377
>gi|198428509|ref|XP_002131018.1| PREDICTED: similar to General transcription factor II H,
polypeptide 4 [Ciona intestinalis]
Length = 463
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/202 (36%), Positives = 123/202 (60%), Gaps = 6/202 (2%)
Query: 87 IKDFADLGLVKLQQGRKESWFIPTKLATNLS----MSLTDSSARKEGFVVVETNFRMYAY 142
++ F ++GLV +Q+ RK F PT LA NL+ S+T+ + + GF++ ETNFR+YAY
Sbjct: 260 LQHFREMGLV-MQRKRKSRRFYPTYLAINLANRANASVTNVTNSR-GFILAETNFRVYAY 317
Query: 143 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD 202
+ S+L IL LF K+ Y+ PN+ V +T++S+ +A NGITA+QI+ +++ NAHP +
Sbjct: 318 TDSELQYSILSLFCKMLYRFPNVCVLQLTRKSIQSAVVNGITADQILHYIKANAHPDMLK 377
Query: 203 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
P + + DQ+RLW + +R+ Y +F ++ FE +YA++ L+WE+S K
Sbjct: 378 NDPIIAPTLADQVRLWAMERDRLTYRDGVLYNQFLAQKDFEVLRNYAKELGALIWENSSK 437
Query: 263 MRLVVNAEIHMHMREFLRGQNK 284
+VV + H ++ + + K
Sbjct: 438 RYMVVTKDGHDQVKRYWKKYKK 459
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 33/241 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL---SMSLTD----- 122
++Y L+ Q + D D G+V + + F PT+LAT L S++++
Sbjct: 144 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGE 203
Query: 123 ------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
S GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 204 PAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 263
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 222
T++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+ +
Sbjct: 264 TRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLER 323
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+R++ T ++EF + FEA C YA + L+W+ DS++M V H + FLR
Sbjct: 324 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRS 380
Query: 282 Q 282
+
Sbjct: 381 R 381
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 130/241 (53%), Gaps = 33/241 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL---SMSLTD----- 122
++Y L+ Q + D D G+V + + F PT+LAT L S++++
Sbjct: 144 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGE 203
Query: 123 ------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
S GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 204 PAVPTTTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 263
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 222
T++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+ +
Sbjct: 264 TRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLER 323
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRG 281
+R++ T ++EF + FEA C YA + L+W+ DS++M V H + FLR
Sbjct: 324 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRS 380
Query: 282 Q 282
+
Sbjct: 381 R 381
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/262 (33%), Positives = 142/262 (54%), Gaps = 18/262 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ +S+ + R + + +FQ L FL G + Y++ +SE
Sbjct: 208 FILQYLSTVET-RGVSLVDCLQFIFQ-----------LSFLTLG--KDYSIKGVSENLLV 253
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE--GFVVVETNFRMYAYS 143
++ + GLV Q+ RK F PT+LA L+ L + A K+ G+++VETN+R+YAY+
Sbjct: 254 FLQHLREFGLV-YQRKRKSGRFYPTRLAIGLASGLKELQATKDEQGYIIVETNYRVYAYT 312
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S L +L LF ++ Y+ PNL+V +T+ES+ A + GIT+ QI FL+ +H V +R
Sbjct: 313 DSPLQVALLSLFCELLYRFPNLLVAVLTRESVRQALKGGITSNQITHFLKSRSHRVVLER 372
Query: 204 IPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
+P V DQ+RLWE + +R + + Y +F + FE +YARD L +E+ +K
Sbjct: 373 EEGIIPMTVTDQLRLWELERDRFKFGESVLYSQFQTTGDFEMLRNYARDIGVLKYENPQK 432
Query: 263 MRLVVNAEIHMHMREFLRGQNK 284
LVV+ +R+F + K
Sbjct: 433 RFLVVSKSGDAEVRQFWKRHKK 454
>gi|332030486|gb|EGI70174.1| General transcription factor IIH subunit 4 [Acromyrmex echinatior]
Length = 550
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 156/302 (51%), Gaps = 48/302 (15%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTN------FSSSMMK---------VFQRG---LLI 56
L++YA+ +WEC L ++ S Q E + + +MK + Q G LL+
Sbjct: 149 LDSYALERWECVLHYMVGSQQQEGISADAVRILLHAGLMKRDEADGSPIITQAGFQFLLL 208
Query: 57 QS---------------------ILRSLKFLCQ----GILEAYNLNTLSEIQRSMIKDFA 91
+ ++ L FL Q + + Y+ +SE + ++
Sbjct: 209 DTASQVWYFILQYLDTIEARGLDLVECLTFLFQLNFSTLGKDYSTEGMSEGLLTFLQHLR 268
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLH 148
+ GLV Q+ RK F PT+LA N++ T R KEG+++VETN+R+YAY+ S L
Sbjct: 269 EFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYIIVETNYRVYAYTNSNLQ 327
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV- 207
+L LF ++ Y+ PN++V +T++S+ A ++GITA QI+ +L+Q+AH ++ + P +
Sbjct: 328 VALLGLFCEMLYRFPNVVVSILTRDSVRQALKSGITASQIVGYLRQHAHSKMIEAGPPIL 387
Query: 208 PENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVV 267
P + DQI+LWE++ NR + Y +F S+ FE D+A L+W+ ++ L+
Sbjct: 388 PPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLRDHAVSTGVLIWQSERRSTLLA 447
Query: 268 NA 269
+
Sbjct: 448 DT 449
>gi|298705308|emb|CBJ48998.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 534
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 120/226 (53%), Gaps = 32/226 (14%)
Query: 63 LKFLCQ----GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM 118
L FL Q + +AY L L++ QR + +DF +LGL+ ++ K + F PT +A NL
Sbjct: 253 LAFLFQLSYCKVGDAYPLGALTQTQRDLAQDFVELGLL-FKRKAKSTRFYPTSIAVNLIF 311
Query: 119 SLTDS----------------------SARKEG----FVVVETNFRMYAYSTSKLHCEIL 152
+ S ++E ++VETNF++ AY+ SKLH +L
Sbjct: 312 GSSPSGDAGGAGGGGTQRKPQPAGGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAML 371
Query: 153 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 212
LF ++ LPN IVGAIT+ES+ A GI Q++ FL+ +AHP V R P VPEN+
Sbjct: 372 SLFLELRALLPNAIVGAITRESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIA 431
Query: 213 DQIRLWESDLNRVEMTPAHYYE-EFPSRDVFEAACDYARDRSGLLW 257
DQ+ LWE + +R+E + + SRD F ++A + GLLW
Sbjct: 432 DQVLLWERERDRMEHRDGVLVDVSYASRDAFRGMTEFANAKQGLLW 477
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 135/270 (50%), Gaps = 64/270 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY +++LS+ Q SM+ D D GLV Q+ + F PT+LAT L+
Sbjct: 237 KAYAVSSLSDTQLSMLPDLRDYGLV-YQRSENSTRFFPTRLATTLTSESTGLKTPSMALN 295
Query: 118 MSLTDSSARKE------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
+L D A+ + G +++ETNF++YAY+ S L IL LF ++ + N+
Sbjct: 296 QTLEDPGAKDQEHVTSEAGESQSGQIILETNFKLYAYTNSPLEIAILNLFVNLKVRFANM 355
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------------- 200
++G IT+ES+ A NGITA+QII FL+ +AH ++
Sbjct: 356 VIGQITRESIRKALYNGITADQIIKFLETHAHSQMRTSAKEKLDKKIEFDASHNINTAGG 415
Query: 201 ------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
R+ +P NV DQI+LW+ +L+R++ + +++F +++ ++ C+Y
Sbjct: 416 APQSKSSDSGVAQHRLEILPPNVVDQIKLWQLELDRIQTFEGYLFKDFKNQNEYDVLCNY 475
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
A + LLW D K+R V AE + +F
Sbjct: 476 ATEVGVLLWSDKTKLRFFVTAEGMHQVADF 505
>gi|407927340|gb|EKG20235.1| Transcription factor Tfb2 [Macrophomina phaseolina MS6]
Length = 466
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 129/226 (57%), Gaps = 19/226 (8%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-------------SMSL 120
Y+ ++L+ Q+ M+ D D G+V + K + F PT+LAT L S +L
Sbjct: 243 YSTDSLTATQQHMLDDLNDFGIV-YRSPPKSNRFYPTRLATTLTSDAAALNNSDSFSSAL 301
Query: 121 TDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
+SA +G++++ETN+R+YAY++S L +L LF+ +E + PNL+ G +TKES+ A
Sbjct: 302 NSTSASGSKGYIIIETNYRLYAYTSSPLQIAVLALFTDLETRFPNLVSGKLTKESVQRAI 361
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
GITA+QIIS+L AHP++ + P +P V DQIRLW+ + +R+ T +++F
Sbjct: 362 GLGITADQIISYLDTYAHPQMQRKTPVLPPTVVDQIRLWQIEGDRMRATEGFLFKDFRDW 421
Query: 240 DVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQNK 284
D ++ YA L+W D +++ + E + ++++ + K
Sbjct: 422 DEYQDLKKYADSIGVLVWSNDQRRLMFLTRVE---QISQYIKNRTK 464
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 31/230 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPTKLATNL-------------S 117
++Y L+ Q + D D G++ E+ F PT+LAT L S
Sbjct: 182 QSYEKRHLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSNTMSSS 241
Query: 118 MSLTDSSARKE---GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 174
+S ++A E GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S
Sbjct: 242 LSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQS 301
Query: 175 LYNAFENGITAEQIISFLQQNAHPRVADR-----------IPS--VPENVCDQIRLWESD 221
+ A E GITA+QIIS+L +AHP++ IP +P V DQIRLW+ +
Sbjct: 302 IRRAVEMGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLE 361
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAE 270
+R++ TP ++EF S +E C YA + L+W+ D K+M V E
Sbjct: 362 RDRIKATPGFLFKEFASLAEYEGPCRYAEEIGVLVWKSDRKRMFFVTRYE 411
>gi|339237219|ref|XP_003380164.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
gi|316977049|gb|EFV60220.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
Length = 674
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/207 (38%), Positives = 117/207 (56%), Gaps = 1/207 (0%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVV 132
AY+ L+E + I+ ++GLV Q+ R WF T L + L+ + SS+ KEGF++
Sbjct: 238 AYSTENLTEAALNFIQHLREIGLVH-QRKRSAGWFYYTPLISVLTGLKSSSSSSKEGFLI 296
Query: 133 VETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFL 192
VETNFR+Y Y+ S L I+ F + Y+ PNL+ + +ES+ AF+ I+AEQII +L
Sbjct: 297 VETNFRVYCYTDSVLDLAIVSTFCEPLYRFPNLVACILNRESVRRAFQVNISAEQIIQYL 356
Query: 193 QQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDR 252
NAH + + P++P V DQI+LWE + +R + P Y F S + DYA+D
Sbjct: 357 FSNAHKNMQKQTPTIPSTVTDQIKLWEMERDRFKFDPGVMYSNFFSDTDYITIRDYAKDL 416
Query: 253 SGLLWEDSKKMRLVVNAEIHMHMREFL 279
LL E LVV+A+ H +FL
Sbjct: 417 GVLLCEHEANRALVVSADGHEQSNQFL 443
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 36/245 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-------SMSLTDSSA 125
AY+ + L+E +++M+ AD GL+ + + R + ++ PT+LAT L S+S + +A
Sbjct: 297 AYDTSALTETRKNMLPALADFGLIYIDRDRPQQYY-PTRLATTLTSLSTMRSVSASIDAA 355
Query: 126 RKE---------------------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
K+ G +VVETN+R+YAY++S L IL+LF ++ + PN
Sbjct: 356 TKKTPGDAGSLGADSTPTAPADENGGIVVETNYRIYAYTSSPLQIAILKLFCRLHMRFPN 415
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWE 219
++ +T+ES+ A + GITA QII +L +AHP++ A +P V DQIRLW+
Sbjct: 416 MVTARLTRESVQEAIKEGITANQIIDYLVAHAHPQMRRAAAARGTTVIPPTVMDQIRLWQ 475
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
+ R++ TP +++F S + + +YA + L+W+D +K V+ +REFL
Sbjct: 476 LESQRMQKTPGFQFKDFESVEEYRQLAEYATEIGVLVWKDDRKGTFFVSKV--EQIREFL 533
Query: 280 RGQNK 284
+ + K
Sbjct: 534 KARKK 538
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 39/244 (15%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK--- 127
++Y L+ Q + D D G+V + + F PT+LAT L+ +DS A
Sbjct: 242 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLT---SDSLAMSGPI 298
Query: 128 --------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 167
GF++VETN+R+YAY++S L ++ LF+ ++++ PNLI
Sbjct: 299 SGEPTVPTTSAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLIT 358
Query: 168 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWE 219
G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+
Sbjct: 359 GKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQ 418
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREF 278
+ +R++ T ++EF + FEA C YA + L+W+ DS++M V H + F
Sbjct: 419 LERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAF 475
Query: 279 LRGQ 282
LR +
Sbjct: 476 LRSR 479
>gi|296422658|ref|XP_002840876.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637102|emb|CAZ85067.1| unnamed protein product [Tuber melanosporum]
Length = 460
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 115/201 (57%), Gaps = 15/201 (7%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY++NTL+E Q+ M+ D D G+V Q+ F PT+LAT L+
Sbjct: 228 QAYSVNTLTETQKLMLADLRDYGIV-YQRKSSSDRFYPTRLATTLTSESGGLRSASASMS 286
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
++ + +GF+++ETN+R+YAY+ S L +L LF K+ + PNL+ G I++ S+
Sbjct: 287 SAMAKDAEEGKGFIILETNYRVYAYTDSPLQIAVLNLFVKLSTRYPNLVSGRISRRSIQE 346
Query: 178 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
A + GITA+Q+I +L +AHP++ + ++P V DQIRLW+ + R+ T +++F
Sbjct: 347 AIKMGITADQVIDYLSAHAHPQMRKSLVTLPPTVVDQIRLWQIEGERMRTTTGFLFKDFH 406
Query: 238 SRDVFEAACDYARDRSGLLWE 258
S FE YA + L W+
Sbjct: 407 STQEFEEVAKYAEELGVLKWK 427
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 37/239 (15%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA-------- 125
Y+ + ++ Q + D AD G+V Q+ + F PT+LAT L+ +DSSA
Sbjct: 247 YDKSHMTPNQLRTLMDLADFGIV-YQEHADATRFYPTRLATTLT---SDSSALSNPVTGS 302
Query: 126 ----------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+
Sbjct: 303 LTGPAGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSV 362
Query: 176 YNAFENGITAEQIISFLQQNAHPRV---------ADRIPS--VPENVCDQIRLWESDLNR 224
A E GITA+QIIS+L +AHP++ +P+ +P V DQIRLW+ + +R
Sbjct: 363 RRAIEMGITADQIISYLLSHAHPQLRKHSAAQPNGKGVPASVLPPTVTDQIRLWQLERDR 422
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREFLRGQ 282
+ T +++F S ++A C YA + L+W+ D K+M V H + FLR Q
Sbjct: 423 LRATAGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSQ 478
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 150/294 (51%), Gaps = 51/294 (17%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 249 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 294
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +T + +A + GF+VVETN+R+YAY+
Sbjct: 295 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVETNYRLYAYT 353
Query: 144 T----------------------------------SKLHCEILRLFSKIEYQLPNLIVGA 169
S+L ++ LFS++ Y+ PN++V
Sbjct: 354 GEVGGIKMRIEIRGGGIGGELNLLWSSIVFSLETESELQIALIALFSEMLYRFPNMVVAQ 413
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 229
+T+ES+ A NGITA+QII F++ AHP + + P +P + DQIRLWE + +R+ +
Sbjct: 414 VTRESVQQAIANGITAQQIIHFMKTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFSE 473
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
Y +F S+ FE +AR+ L++E++ K +VV H ++ F + Q
Sbjct: 474 GVLYNQFLSQVDFELLLSHARELGVLVFENTAKRLMVVTPAGHSDVKRFWKRQK 527
>gi|354546081|emb|CCE42810.1| hypothetical protein CPAR2_204530 [Candida parapsilosis]
Length = 451
Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 141/277 (50%), Gaps = 66/277 (23%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR 126
C + ++Y++ +LSE Q SM+ D DLGL+ Q+ + S F PT+LAT L+ +DSSA
Sbjct: 179 CLELGKSYSVLSLSETQVSMLADLKDLGLI-YQKSKTSSRFYPTRLATTLT---SDSSAL 234
Query: 127 K-------------EG---------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
K EG +++ETNF++YAY+ S L IL LF +++ + N
Sbjct: 235 KTPSMAVEQALEESEGQMMTSTSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSN 294
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA----------------------- 201
++ G IT+ES+ NA NGIT++QII FL+ +AHP++
Sbjct: 295 MVCGQITRESIRNALYNGITSDQIIKFLETHAHPQMKALAKEKLDKKVEFDASHNINTAG 354
Query: 202 -------------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
++ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +Y
Sbjct: 355 GAPQSKTDGTISQHKLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDMLSNY 414
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREF----LRG 281
A + L+W D K + V + + +F LRG
Sbjct: 415 ATELGVLVWGDKAKRKFFVTKDGMAQVADFANRKLRG 451
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 39/244 (15%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK--- 127
++Y L+ Q + D D G+V + + F PT+LAT L+ +DS A
Sbjct: 242 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSGPI 298
Query: 128 --------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 167
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI
Sbjct: 299 SGEPAVPTTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLIT 358
Query: 168 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWE 219
G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+
Sbjct: 359 GKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQ 418
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMREF 278
+ +R++ T ++EF + FEA C YA + L+W+ DS++M V H + F
Sbjct: 419 LERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAF 475
Query: 279 LRGQ 282
LR +
Sbjct: 476 LRSR 479
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 76/219 (34%), Positives = 121/219 (55%), Gaps = 21/219 (9%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSAR---- 126
Y++ +L+ Q+ M++D D G+V Q+ F PT+LAT L+ SL +A
Sbjct: 236 YDMKSLTPTQKGMLEDLRDYGIV-YQRKSSSRRFYPTRLATGLTSEIRSLRSPAATLANA 294
Query: 127 -----KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 181
+ GF+++ETN+ S L +L LF+++ + PNL+ IT+ES+ A
Sbjct: 295 TPGNDENGFLIIETNYH------SPLQIAVLNLFARLISRFPNLVTARITRESIRQAIGK 348
Query: 182 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
GITAEQII ++ NAHP++ P +P V DQIRLW+ + R+++T + ++EF +
Sbjct: 349 GITAEQIIDYMTANAHPQLRKNSPVLPPTVVDQIRLWQIEGERMKVTSGYLFKEFATNAE 408
Query: 242 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
F A C YA D L+W D K L V+ H + +++R
Sbjct: 409 FNAVCKYADDIGVLVWIDKNKGMLFVSK--HEQIADYIR 445
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/241 (32%), Positives = 125/241 (51%), Gaps = 33/241 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARKEG- 129
++Y L+ Q + D D G+V + + F PT+LAT L+ S G
Sbjct: 242 QSYEKKNLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGE 301
Query: 130 -------------------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
F++VETN+R+YAY++S L ++ LF+ ++++ PNLI G I
Sbjct: 302 PTVPAAAAGATTAGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKI 361
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWESDL 222
T++S+ A E GITA+QI+S+L +AHP++ S +P V DQIRLW+ +
Sbjct: 362 TRQSVRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTTNVSSTVLPPTVVDQIRLWQLER 421
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLRG 281
+R++ T ++EF + FEA C YA + L+W DS++M V H + FLR
Sbjct: 422 DRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRS 478
Query: 282 Q 282
+
Sbjct: 479 R 479
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 136/236 (57%), Gaps = 18/236 (7%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES--WFIPTKLATN 115
S L L FL G Y ++ LSE Q+ + GL+ + R +S F PT+L +
Sbjct: 249 SFLFRLSFLNLG--RGYLVSELSEQQKEYLFALKQFGLIYM---RTDSSILFYPTRLIIS 303
Query: 116 LS----MSLTDS-------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
L+ +SL S + +++G++V+ETN+R+YAY++S L +L LF K+ Y+LPN
Sbjct: 304 LTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPN 363
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
L VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR
Sbjct: 364 LAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNR 423
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ T + Y FP+ D + A +A+++ +W LVV E + +R F++
Sbjct: 424 ITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPIRNFIK 479
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 148/293 (50%), Gaps = 50/293 (17%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 261 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 306
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY- 142
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 307 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 365
Query: 143 --------------------------------STSKLHCEILRLFSKIEYQLPNLIVGAI 170
S S+L ++ LFS++ Y+ PN++V +
Sbjct: 366 GEVGQSAPEEKKEGLEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPNMVVAQV 425
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 230
T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T
Sbjct: 426 TRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEG 485
Query: 231 HYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
Y +F S+ FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 486 VLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 538
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 134/243 (55%), Gaps = 7/243 (2%)
Query: 46 MMKVFQRGLLIQSILRSLKFLCQGILE-AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKE 104
M V RGL + L L + G L Y + +SE ++ ++ + GLV Q+ RK
Sbjct: 228 METVESRGLDLAQCLTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGLV-YQRKRKA 286
Query: 105 SWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
F PT+L + + +S R KE ++VVETNFR+YA + S L ++ LF+ + Y+
Sbjct: 287 GRFYPTRLVIEMGQGNSRTSERMKNKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYR 346
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221
PN+ G +T++S+ A +GITA QI+ FL + HP++ + +P+ V DQI LWE++
Sbjct: 347 FPNMSAGILTRDSVRTALRSGITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWENE 404
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 281
NR+ T Y + + +E +YA D L+W D ++ +VV+ + H +R+F +
Sbjct: 405 RNRLTYTDGVLYSNINTPNDYETIKNYAADIGALVWCDERRRNIVVSTDGHDDVRKFWKK 464
Query: 282 QNK 284
Q K
Sbjct: 465 QPK 467
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 163/350 (46%), Gaps = 80/350 (22%)
Query: 6 TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLL---- 55
T ++P + DL+ Y+ QWE L L S A +P+ F SS++ + Q G L
Sbjct: 123 TNKIPNINDLDNYSKKQWEQVLYFL--SDDAAQPSKFISDLLLSSNLTRRDQDGSLSITS 180
Query: 56 ----------------------------------------IQSILRSLKFLCQGILEAYN 75
+ L L FL G + Y
Sbjct: 181 DGFKFLLKDVYTQIWTLLIVYLNDLEKKRREGLTQGSRNDLLGFLFRLSFLQLG--KGYL 238
Query: 76 LNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT------------DS 123
+ L+E+Q+ + GL+ ++ +F PT+L +L+ T +S
Sbjct: 239 VGELTELQKEYLICLKQFGLIYMKSD-ASLFFYPTRLIISLTTGKTLSLIQTLAVDKINS 297
Query: 124 SA-------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
S+ ++ G++V+ETN+R+YAY+ S L +L LF K+ Y+LPNL VG I
Sbjct: 298 SSNSANTVASSTIEKKESGYIVLETNYRLYAYTASSLQISLLSLFVKMLYRLPNLAVGII 357
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 230
T+ES+ A +GITA+QII F++ NAHP + +P+ V +QI LWE + NR+ T +
Sbjct: 358 TRESIRTALIHGITADQIIDFIRHNAHPNAVNNGQPIPDVVAEQILLWEQERNRITYTKS 417
Query: 231 HYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
Y FP+ D + A +A+++ +W + + LVVN + +R F++
Sbjct: 418 VLYNSFPTTDCYHATLKFAKEQDYYIWSNDQLKTLVVNENGNDPIRNFIK 467
>gi|366997767|ref|XP_003683620.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
gi|357521915|emb|CCE61186.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
Length = 504
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 60/265 (22%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE--- 128
+AY++ LS+ Q+ M+KD D GL+ Q+ + F PT LAT L+ +DSS +
Sbjct: 237 KAYSVEGLSDTQKKMLKDMRDYGLI-FQKTSNATVFYPTTLATQLT---SDSSTVRSASG 292
Query: 129 -----------------------------------GFVVVETNFRMYAYSTSKLHCEILR 153
G +VVETNF++Y+YS S L IL
Sbjct: 293 AIDSLLSQTKEANNNDSQNLGTDTDDLVGNQSVEVGALVVETNFKLYSYSNSPLQIAILS 352
Query: 154 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 200
LF + + N++ G IT+ES+ NA NG+TA+QII++LQ +AHP++
Sbjct: 353 LFVHLRTRFSNMVTGQITRESIRNALANGVTADQIIAYLQSHAHPQMRRLAETTLKKKLE 412
Query: 201 -----ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
D++ +P V DQI+LW+ +L+R+ Y +F + + +YA+D L
Sbjct: 413 LDPNTKDQLQILPPTVVDQIKLWQLELDRILSYDGSLYSDFDNNQEYNMLYNYAKDIGVL 472
Query: 256 LWEDSKKMRLVVNAEIHMHMREFLR 280
LW++ +K + V+ E + + +F +
Sbjct: 473 LWKNDRKRKFFVSKEGNSQVLDFAK 497
>gi|448527133|ref|XP_003869438.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis Co 90-125]
gi|380353791|emb|CCG23303.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis]
Length = 500
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 137/277 (49%), Gaps = 66/277 (23%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR 126
C + + Y+++ LSE Q SM+ D DLGLV Q+ + F PT+LAT L+ +DSSA
Sbjct: 228 CLELGKGYSVSNLSETQVSMLADLKDLGLV-YQKSDTSNKFYPTRLATTLT---SDSSAL 283
Query: 127 KEGF----------------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
K +++ETNF++YAY+ S L IL LF +++ + N
Sbjct: 284 KTPSMAVQQALEENEEQMMASNSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSN 343
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------------ 200
++ G IT+ES+ NA NGIT++QII FL+ +AHP++
Sbjct: 344 MVCGQITRESIRNALYNGITSDQIIKFLETHAHPQMRALAKEKLDKKVEFDASHNINTAG 403
Query: 201 ------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
++ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +Y
Sbjct: 404 GAPQSKTDGAISQHKLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQEYDTLSNY 463
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREF----LRG 281
A + L+W D K + V + + +F LRG
Sbjct: 464 ATELGVLVWGDKVKRKFFVTKDGMAQVADFANRKLRG 500
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 55/298 (18%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 262 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 307
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY- 142
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 308 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 366
Query: 143 -------------------------------------STSKLHCEILRLFSKIEYQLPNL 165
S S+L ++ LFS++ Y+ PN+
Sbjct: 367 GEAGQRAPGRGGWGHLKEGLEGVWVWGWPPLPLSIPGSESELQIALIALFSEMLYRFPNM 426
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 225
+V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+
Sbjct: 427 VVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRL 486
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
T Y +F S+ FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 487 RFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 544
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 133 bits (335), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 148/298 (49%), Gaps = 55/298 (18%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 360 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 405
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY- 142
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 406 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 464
Query: 143 -------------------------------------STSKLHCEILRLFSKIEYQLPNL 165
S S+L ++ LFS++ Y+ PN+
Sbjct: 465 GEVGQRAPGRAGWGRGNARLEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPNM 524
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRV 225
+V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+
Sbjct: 525 VVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRL 584
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
T Y +F S+ FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 585 RFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 642
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 148/299 (49%), Gaps = 56/299 (18%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 282 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 327
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY- 142
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 328 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 386
Query: 143 --------------------------------------STSKLHCEILRLFSKIEYQLPN 164
S S+L ++ LFS++ Y+ PN
Sbjct: 387 GEAGQRAPGRAGWGXHLKERFEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPN 446
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R
Sbjct: 447 MVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDR 506
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
+ T Y +F S+ FE +AR+ L++E+S K +VV H ++ F + Q
Sbjct: 507 LRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 565
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 149/302 (49%), Gaps = 59/302 (19%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 239 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 284
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S +A + GF+VVETN+R+YAY+
Sbjct: 285 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 343
Query: 144 T------------------------------------------SKLHCEILRLFSKIEYQ 161
S+L ++ LFS++ Y+
Sbjct: 344 GEARQRAPNSRXGVGTFLVTLEGLEGVWVWGXPSSSLPIPGPESELQIALIALFSEMLYR 403
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221
PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE +
Sbjct: 404 FPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELE 463
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 281
+R+ T Y +F S+ FE +AR+ L++E+S K +VV H ++ F +
Sbjct: 464 RDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKR 523
Query: 282 QN 283
Q
Sbjct: 524 QK 525
>gi|344303892|gb|EGW34141.1| RNA polymerase II transcription factor B subunit 2 [Spathaspora
passalidarum NRRL Y-27907]
Length = 519
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 134/276 (48%), Gaps = 73/276 (26%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---- 127
++Y +++LSE Q SM+ D D GLV ++ S F PT+LAT L+ +DSSA K
Sbjct: 238 KSYAVSSLSETQVSMLADLKDYGLV-YRRTDTSSRFYPTRLATTLT---SDSSALKTPAM 293
Query: 128 --------------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
+G V++ETNF++YAY+ S L IL LF + +
Sbjct: 294 AVEQALDSVEGGTDNEVSQTAPPGNIQGTVIIETNFKLYAYTNSPLEIAILNLFVHLRTR 353
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------------------- 200
N++ G IT+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 354 FANMVCGQITRESIRNALYNGITADQIIRFLETHAHPQMKVLAKEKLDKKIEFDTSHNIN 413
Query: 201 ------------AD------RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 242
AD ++ +P NV DQI+LW+ +L+R++ + +++FP++ F
Sbjct: 414 TAGGAPQSQALRADGSVAQHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFPNQQEF 473
Query: 243 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ YA + L+W D K + V + + +F
Sbjct: 474 DKLSSYASELGVLIWSDKIKRKFFVTKDGMSQVADF 509
>gi|46127843|ref|XP_388475.1| hypothetical protein FG08299.1 [Gibberella zeae PH-1]
gi|408390907|gb|EKJ70292.1| hypothetical protein FPSE_09509 [Fusarium pseudograminearum CS3096]
Length = 494
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 127/247 (51%), Gaps = 38/247 (15%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 118
AY+ N L+E +++M+ D GL+ + K S F PT+LAT L+
Sbjct: 249 AYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSISDGVAA 307
Query: 119 ----------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
S T SS + G V++ETN+R+YAY+ S L +L LF+K++ +
Sbjct: 308 ATAAALQPGQSRAPGSSATGSSNEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLQMRF 367
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRL 217
P+++ G I+++S+ A GITAEQIIS+L +AH ++ + P +P V DQIRL
Sbjct: 368 PDMVAGRISRQSIRQAINFGITAEQIISYLSAHAHDQMRRTASLNNKPVLPPTVVDQIRL 427
Query: 218 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMRE 277
W+ + R++ T +++F + A +A + L+W + K A H +R+
Sbjct: 428 WQLENERMKTTGGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFF--ASKHEQIRD 485
Query: 278 FLRGQNK 284
+LR + K
Sbjct: 486 YLRIRKK 492
>gi|45187599|ref|NP_983822.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|62901343|sp|Q75B51.1|TFB2_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|44982337|gb|AAS51646.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|374107034|gb|AEY95942.1| FADL274Wp [Ashbya gossypii FDAG1]
Length = 514
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 61/267 (22%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSA--- 125
+AY++ LSE Q++M++D D GLV Q+ S F PT+LAT L+ +S+ +S
Sbjct: 246 KAYSVVGLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVN 304
Query: 126 -----RKEGF--------------------------VVVETNFRMYAYSTSKLHCEILRL 154
R EG ++VETNF++Y+YS S L IL L
Sbjct: 305 SVLRQRAEGVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSL 364
Query: 155 FSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVA---------- 201
F ++ + N++ G IT+ES+ A NGITA+QII++++ +AHP R+A
Sbjct: 365 FIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLEL 424
Query: 202 -----DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
D + +P V DQI+LW+ +L+R+ + + +F + ++ YARD LL
Sbjct: 425 DPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLL 484
Query: 257 WEDSKKMRLVVNAE-----IHMHMREF 278
W D KK V+ E I H R+F
Sbjct: 485 WSDDKKKMFFVSKEGNAQVIDFHKRKF 511
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 89/139 (64%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
+ FV+VE+N+R+Y Y+ S + +L LF K E LPNL VGAI ++S+ A GITA++
Sbjct: 297 DAFVIVESNYRVYVYTRSPVTIAVLELFVKREALLPNLFVGAIRRDSILAALARGITADE 356
Query: 188 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
++++L HP +A R P VPE V DQIRLWE+ +NR++ PA YE SR ++E A
Sbjct: 357 LVAYLSARPHPSIAARCPVVPEVVSDQIRLWEASMNRLQAHPAVLYENMESRQLYERAVA 416
Query: 248 YARDRSGLLWEDSKKMRLV 266
AR L WED +MR V
Sbjct: 417 AARAAGTLQWEDGARMRFV 435
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 96/158 (60%)
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
SS+ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A G
Sbjct: 52 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 111
Query: 183 ITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVF 242
ITA QI+SFL NAHP + P +P + DQIRLWE + +R YE F F
Sbjct: 112 ITANQILSFLTSNAHPDMLLSNPILPPTLTDQIRLWELERDRFVFQEGCLYEHFSRNTDF 171
Query: 243 EAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
E DYA++ LLWE+ ++ +VV+ H +R+F +
Sbjct: 172 ELVRDYAKNIGVLLWENPERRLMVVSKSGHEDVRKFWK 209
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 51/281 (18%)
Query: 37 ERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLV 96
E N ++ VFQ L FLC ++Y + LS Q+ +++ +LGL
Sbjct: 215 ENSKNLVGALQFVFQ-----------LSFLCP--TKSYPVEALSTAQQEVLQHMRELGLA 261
Query: 97 KLQQGRKESWFIPTKLA--------------------------TNLSMS----------- 119
Q+ R F T LA T +S S
Sbjct: 262 -YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPTGVSKSDPTDSNKMFSQ 320
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
++ S++ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A
Sbjct: 321 ISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREAL 380
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
GITA QI+SFL NAHP + + P +P + DQIRLWE + +R YE+F
Sbjct: 381 IRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCLYEQFSRN 440
Query: 240 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
FE DYA+ LLWE+ ++ +VV+ H +R+F +
Sbjct: 441 TDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 136/281 (48%), Gaps = 51/281 (18%)
Query: 37 ERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLV 96
E N ++ VFQ L FLC ++Y + LS Q+ +++ +LGL
Sbjct: 215 ENSKNLVGALQFVFQ-----------LSFLCP--TKSYPVEALSTAQQEVLQHMRELGLA 261
Query: 97 KLQQGRKESWFIPTKLA--------------------------TNLSMS----------- 119
Q+ R F T LA T +S S
Sbjct: 262 -YQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGVIPTGVSKSDPTDSNKMFSQ 320
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
++ S++ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A
Sbjct: 321 ISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREAL 380
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
GITA QI+SFL NAHP + + P +P + DQIRLWE + +R YE+F
Sbjct: 381 IRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWELERDRFLFQEGCLYEQFSRN 440
Query: 240 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
FE DYA+ LLWE+ ++ +VV+ H +R+F +
Sbjct: 441 TDFEMVRDYAKSIGVLLWENPERRLMVVSKAGHEDVRKFWK 481
>gi|149238950|ref|XP_001525351.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450844|gb|EDK45100.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 503
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 59/244 (24%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--------------- 117
+Y+++ LSE Q SM+ D D GLV Q+ S F PT+LAT L+
Sbjct: 237 SYSVSNLSETQVSMLADLKDYGLV-YQKSDTSSRFYPTRLATTLTSDSAALKTPSMAVEQ 295
Query: 118 ------MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
SL S+ KE +++ETNF+MYAY+ S L IL LF ++ + N+I G IT
Sbjct: 296 ALDETETSLASSTQTKES-IIIETNFKMYAYTNSPLEIAILNLFVHMKTRFSNMICGQIT 354
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV------------------------------- 200
+ES+ NA NGITA+QII FL+ +AHP++
Sbjct: 355 RESIRNALYNGITADQIIKFLETHAHPQMRALAKERLDKKVEFDASHNINTAGGAPQSKT 414
Query: 201 -----ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
R+ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +YA + L
Sbjct: 415 DGAISQHRLEVLPPNVVDQIKLWQLELDRIQTFDGYLFKDFANQQEYDMLSNYAAEIGVL 474
Query: 256 LWED 259
+W D
Sbjct: 475 IWAD 478
>gi|156839389|ref|XP_001643386.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156113994|gb|EDO15528.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 504
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 134/269 (49%), Gaps = 58/269 (21%)
Query: 69 GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------ 119
G LE AY+ LS Q++M+KD D GL+ Q+ + F PT+LAT L+
Sbjct: 231 GALEFGKAYSTEELSATQKTMMKDMRDYGLI-FQKNSNTNVFYPTRLATMLTSDSRTVRN 289
Query: 120 --------LTDSSAR----------------------KEGFVVVETNFRMYAYSTSKLHC 149
LT S ++G +VVETNF++Y+YS S L
Sbjct: 290 ASSAMDSVLTQSKDEPSGATSGSADVDEQVGTQGQNIQDGALVVETNFKLYSYSNSPLQI 349
Query: 150 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------- 200
IL LF ++ + N++ G IT+ES+ NA NGITAEQII++L+ +AHP++
Sbjct: 350 AILSLFVHLKTRFSNMVTGQITRESIRNALSNGITAEQIIAYLETHAHPQMRRLAEERLK 409
Query: 201 ---------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
+ + +P V DQI+LW+ +L+R+ Y +F ++ ++ YA+D
Sbjct: 410 KKLELDQNSKETLQILPPTVVDQIKLWQLELDRIISYEGSLYSDFDNKQEYDMLYSYAQD 469
Query: 252 RSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
L+W+D +K + V+ E + + ++ +
Sbjct: 470 IGVLIWKDDRKRKFFVSKESNSQVLDYAK 498
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 51/263 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY+ LSE Q M+ D D GLV Q+ + F PT+LA L+
Sbjct: 239 KAYSTENLSETQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAME 297
Query: 118 --MSLTDSSAR----------------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
++ D +A+ ++G +++ETNF++Y+Y S L IL LF ++
Sbjct: 298 SVLNKPDDAAKSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLK 357
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------A 201
+ N++ G IT+ES+ A NGITA+Q+I++L+ +AHP++
Sbjct: 358 SRFANMVAGQITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCK 417
Query: 202 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 261
D + +P V DQI+LW+ +L+RV Y +F + F C YA+D LLW+D +
Sbjct: 418 DPLQVLPPTVVDQIKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDR 477
Query: 262 KMRLVVNAEIHMHMREFLRGQNK 284
K +L V+ E + + E+ + + K
Sbjct: 478 KRKLFVSREGNAQVLEYAKRKIK 500
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 140/260 (53%), Gaps = 33/260 (12%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--SARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS ++ + +A + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+Q
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ---------------- 364
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 365 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 424
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 425 LMVVTPAGHSDVKRFWKRQK 444
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 148/305 (48%), Gaps = 62/305 (20%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 275 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 320
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSA--RKEGFVVVETNFRMYAY- 142
++ + GLV Q+ RK + PT+LA NLS ++ + + GF+VVETN+R+YAY
Sbjct: 321 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 379
Query: 143 --------------------------------------------STSKLHCEILRLFSKI 158
S S+L ++ LFS++
Sbjct: 380 GEAGQRAPGRGGWGALXHFSXHLKEGLEGVWVWGCPPHPLSIPGSESELQIALIALFSEM 439
Query: 159 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLW 218
Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLW
Sbjct: 440 LYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLW 499
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
E + +R+ T Y +F S+ FE +AR+ L++E+S K +VV H ++ F
Sbjct: 500 ELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRF 559
Query: 279 LRGQN 283
+ Q
Sbjct: 560 WKRQK 564
>gi|154273196|ref|XP_001537450.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415962|gb|EDN11306.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 455
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 32/212 (15%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTKLATNL-----------SMS 119
++Y L+ Q + D D G+V +E+ F PT+LAT L S S
Sbjct: 216 QSYEKKHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSS 275
Query: 120 LT--------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
LT S+ GF+++ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T
Sbjct: 276 LTAPNGVPSATSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLT 335
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV---------ADRI---PSVPENVCDQIRLWE 219
++S+ A E GITA+QIIS+L +AHP++ A+ + +P V DQIRLW+
Sbjct: 336 RQSVRRAVEMGITADQIISYLTTHAHPQMRKYHATKPGANPVGVHTVLPPTVVDQIRLWQ 395
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
+ +R++ TP +++F S FE C YA +
Sbjct: 396 LERDRIKATPGFLFKDFVSLAEFEGPCRYAEE 427
>gi|326474968|gb|EGD98977.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton tonsurans CBS 112818]
Length = 489
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 35/219 (15%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNLSMSLTDSSARK--- 127
++Y L+ Q + D D G+V + + F PT+LAT L+ +DS A
Sbjct: 242 QSYEKKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLT---SDSLAMSGPI 298
Query: 128 --------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 167
GF++VETN R+YAY++S L ++ LF+ ++++ PNLI
Sbjct: 299 SGEPAVPTTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLIT 358
Query: 168 GAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPS--------VPENVCDQIRLWE 219
G IT++S+ A E GITA+QIIS+L +AHP++ S +P V DQIRLW+
Sbjct: 359 GKITRQSVRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQ 418
Query: 220 SDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
+ +R++ T ++EF + FEA C YA + L+W+
Sbjct: 419 LERDRIKATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWK 457
>gi|344229873|gb|EGV61758.1| transcription factor Tfb2 [Candida tenuis ATCC 10573]
Length = 498
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 128/250 (51%), Gaps = 53/250 (21%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSL- 120
++Y+++ LS+ Q M+ D D GLV Q+ + F PT+LAT L SM++
Sbjct: 238 KSYSVSALSDTQIEMLSDLRDFGLV-YQRSATSNKFYPTRLATTLTSDSNSLQTPSMAID 296
Query: 121 --------TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 172
TDS R+E +++ETNF++Y+Y+ S L IL LF + + N++ G IT+
Sbjct: 297 KANSGIDSTDSKQRQES-IIIETNFKVYSYTQSPLEIAILNLFVHLRTRFANMVTGQITR 355
Query: 173 ESLYNAFENGITAEQIISFLQQNAHPRVA------------------------------- 201
ES+ NA NGITA Q+I FL+ +AHP++
Sbjct: 356 ESIRNALYNGITAGQVIKFLETHAHPQMKMLAQEKLDKKIEFDASNNINTATGKSTDAPM 415
Query: 202 -DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 260
++ +P NV DQI+LW+ +L+R++ + + EF ++ +E+ +YA + L+W D
Sbjct: 416 QHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFREFNNQIDYESLRNYASEIGVLVWSDD 475
Query: 261 KKMRLVVNAE 270
KK V E
Sbjct: 476 KKRTCFVTKE 485
>gi|403217068|emb|CCK71563.1| hypothetical protein KNAG_0H01490 [Kazachstania naganishii CBS
8797]
Length = 519
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/271 (30%), Positives = 130/271 (47%), Gaps = 63/271 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLA------------------ 113
+AY+ LSE QR MIKD D G+V Q+ + F PT LA
Sbjct: 243 KAYSTEGLSETQRIMIKDMRDYGIV-FQKNSTSNVFYPTSLAIMLTSDSKTVLRTASGAM 301
Query: 114 -TNLSMSLTDSSAR-------------------------KEGFVVVETNFRMYAYSTSKL 147
T LS + D+S+ ++G ++VETNF++Y+YS S L
Sbjct: 302 NTVLSQNKEDTSSTNKSATDKANNDTAELDQVGTQSQEVQDGVLIVETNFKVYSYSNSPL 361
Query: 148 HCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------- 200
IL LF ++ + N++ G ITK S+ NA +NGITAEQII++L+ +AHP++
Sbjct: 362 QIAILSLFVHLKSRFINMVTGQITKRSIINALDNGITAEQIIAYLETHAHPQMRRLAEAQ 421
Query: 201 -----------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
D + +P V DQI+LW+ + +RV Y +F S + YA
Sbjct: 422 LEKKRELDQNCKDPLQILPPTVVDQIKLWQLEKDRVMAFEGSLYSDFESNAEYNILKKYA 481
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+D +LW + KK +L V+ E + + ++ +
Sbjct: 482 QDIGVMLWSEDKKRKLFVSQEGNSQVLDYAK 512
>gi|193654859|ref|XP_001944632.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 470
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 19/249 (7%)
Query: 46 MMKVFQRGLLIQSILRSLKFLCQGILEA----YNLNTLSEIQRSMIKDFADLGLV---KL 98
M V RGL + + L FL Q L Y + + E ++ ++ + GLV KL
Sbjct: 227 METVESRGL---DLAQYLIFLFQIHLSTLGWDYITDGMPENLQTFLQHLQEFGLVYQRKL 283
Query: 99 QQGRKESWFIPTKLATNLSMSLTDSSAR---KEGFVVVETNFRMYAYSTSKLHCEILRLF 155
+ GR F PT+L + + +S R KE ++VVETNFR+YA + S L ++ LF
Sbjct: 284 KAGR----FCPTRLVIEMGRENSHTSKRMKKKERYIVVETNFRIYAMTDSDLKVALVALF 339
Query: 156 SKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQI 215
+ + Y+ PN+ G +T++S+ A NGITA QI+ FL + HP++ + +P+ V DQI
Sbjct: 340 THMLYRFPNMSAGILTRDSVQTALRNGITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQI 397
Query: 216 RLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHM 275
LWE + NR+ Y + + + +EA +YA D LLW D ++ ++V+ + H +
Sbjct: 398 YLWEYERNRLTYRDGVLYSDINTPNDYEAIKNYAADIGALLWCDERQRNIIVSTDGHNDV 457
Query: 276 REFLRGQNK 284
F + Q K
Sbjct: 458 TTFWKKQPK 466
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 72/267 (26%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---- 127
+ Y +++LSE Q SM+ D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 238 KGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSM 293
Query: 128 -----------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
+G +++ETNF++YAY+ S L IL LF ++ + N
Sbjct: 294 AMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSN 353
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA----------------------- 201
++ G IT+ES+ NA NGITA+QII FL+ +AH ++
Sbjct: 354 MVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAG 413
Query: 202 ------------------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
++ +P V DQI+LW+ +L+R++ + +++F S+ FE
Sbjct: 414 GAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFE 473
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAE 270
A +YA + LLW + KM+ V +
Sbjct: 474 ALSNYASEIGVLLWSNKSKMKFFVTKD 500
>gi|410082501|ref|XP_003958829.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
gi|372465418|emb|CCF59694.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
Length = 514
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 134/272 (49%), Gaps = 62/272 (22%)
Query: 70 ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM----------- 118
I +AY+++ L+E Q++M++DF D G++ Q+ F PT LA L+
Sbjct: 237 IGKAYSIDGLTETQKTMLRDFRDYGII-FQKNLTSKSFYPTNLAIMLTSDTRSILRTASG 295
Query: 119 --------------------SLTDSSAR------------KEGFVVVETNFRMYAYSTSK 146
++T+ +A ++G +++ETNF++Y+YS S
Sbjct: 296 AMDSVLRQNKEDSKKQTSGDNVTEDTANDIEQIGLENQEGRDGSLIIETNFKLYSYSNSP 355
Query: 147 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------ 200
L IL LF ++ + N++ G IT+ES+ A NGITA+QII++L+ +AHPR+
Sbjct: 356 LQIAILSLFVHLKSRFVNMVTGQITRESIRRALVNGITADQIIAYLETHAHPRMRRLAEE 415
Query: 201 ------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
D + +P V DQI+LW+ +L+RV Y +F + + Y
Sbjct: 416 KLEKKLELDPNSKDTLQILPPTVVDQIKLWQLELDRVITYDGSLYSDFENSTEYNMLSKY 475
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
A+D L+W+D KK + V+ E + + ++ +
Sbjct: 476 AQDIGVLIWKDDKKRKFFVSKEGNTQVLDYAK 507
>gi|255721741|ref|XP_002545805.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
gi|240136294|gb|EER35847.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
Length = 494
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 131/258 (50%), Gaps = 55/258 (21%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---- 127
++Y ++TLSE Q SM+ D D GLV Q+ F PT+LAT L+ +DS+A K
Sbjct: 234 KSYAVSTLSETQVSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLT---SDSAALKTPAM 289
Query: 128 -----------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
+ +++ETNF++YAY+ S L IL LF +++ + N++ G IT+ES+
Sbjct: 290 AMDEEEQQVVTKESIIIETNFKLYAYTKSPLEIAILNLFVQLKTRFANMVCGQITRESIR 349
Query: 177 NAFENGITAEQIISFLQQNAHPRV------------------------------------ 200
NA NGITA+QII FL+ +AH ++
Sbjct: 350 NALYNGITADQIIKFLETHAHSQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGSIS 409
Query: 201 ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 260
++ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +YA + L+W D
Sbjct: 410 QHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFANQQEYDILSNYASELGVLIWADK 469
Query: 261 KKMRLVVNAEIHMHMREF 278
K + V + + +F
Sbjct: 470 VKRKFFVTKDGMTQVADF 487
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 43/251 (17%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 122
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 227 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 284
Query: 123 SSARKEG------------------------FVVVETNFRMYAYSTSKLHCEILRLFSKI 158
++A G +++ETN+R+YAY+TS L +L LF ++
Sbjct: 285 ATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQL 344
Query: 159 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 213
+ PN++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V D
Sbjct: 345 NMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVD 404
Query: 214 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
QIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 405 QIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHE 462
Query: 274 HMREFLRGQNK 284
+R++L+ + K
Sbjct: 463 QLRDYLKSRKK 473
>gi|452839401|gb|EME41340.1| hypothetical protein DOTSEDRAFT_156149 [Dothistroma septosporum
NZE10]
Length = 497
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 34/236 (14%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L +L L GI +Y+ L+ Q+ M+ D AD GL+ + ++ PT+LAT
Sbjct: 230 VLSFLFTLGSLELGI--SYSTANLTPTQQQMLDDLADFGLIYRRTPDSHRYY-PTRLATT 286
Query: 116 L----------------------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILR 153
L S L S++ ++GF+++ETN+R+YAY++S L IL
Sbjct: 287 LTSDAPALTNNSLMKTTVMTGDPSTDLAASASDEKGFIILETNYRLYAYTSSPLLISILS 346
Query: 154 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP-----RVADRIPSVP 208
LF+ + + PNLI ITK S NA GIT++QII +L +AHP A+ P +P
Sbjct: 347 LFASLNTRYPNLITAKITKASTQNAIAAGITSDQIIDYLTTHAHPVLRRQAAANDAPILP 406
Query: 209 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 264
V DQI+LW+ + R+E T + + S++ ++ A +YA D G+L SK+ R
Sbjct: 407 PTVVDQIKLWQMEGERMEATKGYLIRDIGSQEEYDKAVNYA-DAIGVL---SKEFR 458
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 43/251 (17%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 122
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 227 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 284
Query: 123 SSARKEG------------------------FVVVETNFRMYAYSTSKLHCEILRLFSKI 158
++A G +++ETN+R+YAY+TS L +L LF ++
Sbjct: 285 ATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQIAVLALFCQL 344
Query: 159 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 213
+ PN++ G +T++S+ A GITA+QIIS+L +AH ++ P +P V D
Sbjct: 345 NMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTGKPVLPPTVVD 404
Query: 214 QIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
QIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 405 QIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKHE 462
Query: 274 HMREFLRGQNK 284
+R++L+ + K
Sbjct: 463 QLRDYLKSRKK 473
>gi|448100135|ref|XP_004199281.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359380703|emb|CCE82944.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 509
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 134/274 (48%), Gaps = 63/274 (22%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------- 116
C + ++Y +++LSE Q SM+ D D GL+ KE F PT+LAT L
Sbjct: 233 CLELGKSYTVSSLSETQISMLADLKDYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTP 291
Query: 117 SMSLT------DSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
SM+L +S A +E G +++ETNF++YAY+ S L IL LF ++ + P
Sbjct: 292 SMALNQVVDTANSEATEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFP 351
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD--------------------- 202
N++ G IT+ES+ A NGITA+QII FL+ +AH ++
Sbjct: 352 NMVTGQITRESIRKALFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTA 411
Query: 203 ------------------RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEA 244
++ +P V DQI+LW+ +L+R++ + +++F S+ ++A
Sbjct: 412 TDSQQLSVGEFGSASSYHKLEILPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDA 471
Query: 245 ACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+YA + LLW D + + V + + +F
Sbjct: 472 LRNYASELGVLLWSDKNRKKFFVTKDGMSQVADF 505
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 130/269 (48%), Gaps = 63/269 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSL- 120
++Y +++LS Q SM+ D D GLV Q+ F PT+LAT L SM++
Sbjct: 238 KSYLVSSLSATQVSMLADLRDYGLV-YQRTDSSGRFYPTRLATTLTSDSAALKTPSMAIE 296
Query: 121 -------------TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 167
D+ +G V++ETNF++YAY+ S L IL LF ++ + N++
Sbjct: 297 QALGASDGGEEQQIDTPTGNQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVC 356
Query: 168 GAITKESLYNAFENGITAEQIISFLQQNAHPRVA-------------------------- 201
G IT+ES+ +A NGITA+QII FL+ +AHP++
Sbjct: 357 GQITRESIRSALYNGITADQIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAP 416
Query: 202 ------------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
++ +P V DQI+LW+ +L+R++ + +++F ++ F+ +YA
Sbjct: 417 QSKVSGEGNVAQHKLEILPPTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEFDTLSNYA 476
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ L+W D K + V AE + EF
Sbjct: 477 SEVGVLVWSDKIKKKFFVTAEGMTQVAEF 505
>gi|448103836|ref|XP_004200137.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359381559|emb|CCE82018.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 512
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 133/274 (48%), Gaps = 63/274 (22%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------- 116
C + ++Y +++LSE Q SM+ D D GL+ KE F PT+LAT L
Sbjct: 233 CLELGKSYTVSSLSETQISMLADLKDYGLIYQNHNDKER-FYPTRLATTLTSEAAALRTP 291
Query: 117 SMSLT------DSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
SM+L +S A +E G +++ETNF++YAY+ S L IL LF ++ + P
Sbjct: 292 SMALNQVVDTANSEATEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFP 351
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVAD--------------------- 202
N++ G IT+ES+ A NGITA+QII FL+ +AH ++
Sbjct: 352 NMVTGQITRESIRKALFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTA 411
Query: 203 ------------------RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEA 244
++ +P V DQI+LW+ +L+R++ + +++F S+ ++A
Sbjct: 412 TDNQQLSVGEFGSANSYHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDA 471
Query: 245 ACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
YA + LLW D + + V + + +F
Sbjct: 472 LRSYASELGVLLWSDKNRKKFFVTKDGMSQVADF 505
>gi|313224499|emb|CBY20289.1| unnamed protein product [Oikopleura dioica]
Length = 411
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS---LTDSSARKEGFVVV 133
N+ +EI R +I+ F ++GL+ ++ KE F PT+LA ++S++ S +E F++V
Sbjct: 200 NSNNEISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSISIAGGKKASSEDVQEQFILV 257
Query: 134 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 193
ETN+R+YAY+ S+LH ++ LF++++Y+ P +IV ++++S+ + + GI+AEQI+++L+
Sbjct: 258 ETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQILNYLR 317
Query: 194 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
+AHP VP+ V D I LW + R++ Y +F ++ FE YA+D
Sbjct: 318 SSAHPIARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYAQDIR 377
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFLR 280
L+W + ++ +VV H ++ + +
Sbjct: 378 ALVWANDERRFMVVAPWSHDQIKSYYK 404
>gi|378729002|gb|EHY55461.1| transcription initiation factor TFIIH subunit H4 [Exophiala
dermatitidis NIH/UT8656]
Length = 508
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 121/237 (51%), Gaps = 41/237 (17%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVK---LQQGRKESWFIPTKLA---------------T 114
AY+ L E Q + D G+V L+ G +F PT+LA T
Sbjct: 254 AYSTAPLDETQSRCLSDLVSFGIVYQPLLEDGTPVDYFYPTRLATTLTSDSSTTLSATNT 313
Query: 115 NLSMSLTDSSARKEG---------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
L+ SL+ SA F++VETN+R+YAY++S L +L LF + + PNL
Sbjct: 314 TLASSLSTKSAHSSSSSSAGAGKGFIIVETNYRLYAYTSSPLQIALLSLFVNLRSRHPNL 373
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHP-----------RVADR---IPSVPENV 211
+ G ++K S+ A + GITA+QIIS+L +AHP R AD +P +P +
Sbjct: 374 VTGKMSKSSVQRAIQAGITADQIISYLTSHAHPQMRRHAQAEQARNADPNRVVPILPATI 433
Query: 212 CDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVN 268
DQI LW+ + +R+ TP ++FP++ +EA C YA + L+W++ KK VN
Sbjct: 434 LDQIHLWQLERDRMTTTPGFLLKDFPNQADYEAPCRYADEIGVLVWKNDKKRMFFVN 490
>gi|313245784|emb|CBY34779.1| unnamed protein product [Oikopleura dioica]
Length = 456
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 126/207 (60%), Gaps = 5/207 (2%)
Query: 77 NTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS---LTDSSARKEGFVVV 133
N+ +EI R +I+ F ++GL+ ++ KE F PT+LA ++S++ S +E F++V
Sbjct: 245 NSNNEISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSISIAGGKKASSEDVQEQFILV 302
Query: 134 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 193
ETN+R+YAY+ S+LH ++ LF++++Y+ P +IV ++++S+ + + GI+AEQI+++L+
Sbjct: 303 ETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRDSIQQSADYGISAEQILNYLR 362
Query: 194 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
+AHP VP+ V D I LW + R++ Y +F ++ FE YA+D
Sbjct: 363 SSAHPIARKNKHWVPQVVEDNIHLWCKERERLKFNDGLLYHQFLDQEAFEMLKSYAQDIR 422
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFLR 280
L+W + ++ +VV H ++ + +
Sbjct: 423 ALVWANDERRFMVVAPWSHDQIKSYYK 449
>gi|389642093|ref|XP_003718679.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|351641232|gb|EHA49095.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|440469172|gb|ELQ38293.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae Y34]
gi|440481925|gb|ELQ62459.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae P131]
Length = 490
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 130/227 (57%), Gaps = 28/227 (12%)
Query: 63 LKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-- 116
L FL G LE AY+ LSE +R+M+ D D GLV + + +F PT+LAT L
Sbjct: 242 LSFLFMLGTLELGQAYDTGALSEERRNMLPDLNDFGLVYIPPSNPDQYF-PTRLATTLTS 300
Query: 117 ------SMSLTDSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
S+S ++A E G +++ETNFR+YAY+++ L IL LF+ ++ +
Sbjct: 301 GSSALRSVSSGVAAATAEAGENNTKGAIILETNFRIYAYTSTPLQIAILALFANLKMRFA 360
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI------PSVPENVCDQIRL 217
++ G +++ S+ A +GITA+QII +L +AH ++ RI P +P V DQIRL
Sbjct: 361 GMVTGQLSRHSIKRAISHGITADQIIEYLASHAHEQM-HRIAAIRNKPVLPPTVVDQIRL 419
Query: 218 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKM 263
W+ + R+++ + +++F S+ F+A DYA + L+W D++++
Sbjct: 420 WQLETERMQVQRGYLFKDFESQAEFKAIADYADEVGVLIWRSDARQL 466
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 127/276 (46%), Gaps = 68/276 (24%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+ Y+++ LSE Q+ M+KD D GLV Q+ F PT LA L+
Sbjct: 239 KGYSIDGLSETQKIMLKDMRDYGLV-FQKVSNSKTFYPTNLALMLTSDTKSIVRTASGAI 297
Query: 118 ------------------------------MSLTDSSARK-----EGFVVVETNFRMYAY 142
M D K +G ++VETNF++Y+Y
Sbjct: 298 ESVLNENRSGSNANENGYEPGTKKKNENTIMGTIDQVGMKNQDVPDGSLIVETNFKLYSY 357
Query: 143 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-- 200
S S L IL LF ++++ N++ G IT+ES+ A NGITAEQII++L+ +AHP++
Sbjct: 358 SNSPLQIAILSLFVHLKFRFVNMVTGQITRESIRRALINGITAEQIIAYLETHAHPQMRR 417
Query: 201 ----------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEA 244
D + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 418 LAEEKLEKKLELDANCKDSLQILPPTVVDQIRLWQLELDRVIAYEGSLYSDFENNTEYTT 477
Query: 245 ACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA+D LLW+D KK + V+ E + + ++ +
Sbjct: 478 LYKYAQDIGVLLWKDDKKRKFFVSKEGNSQVLDYAK 513
>gi|241958748|ref|XP_002422093.1| TFIIH subunit, putative; tanscription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223645438|emb|CAX40094.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 494
Score = 126 bits (317), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 124/239 (51%), Gaps = 55/239 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---- 127
++Y++++LSE Q SM+ D D GLV Q+ F PT+LAT L+ +DS+A K
Sbjct: 234 KSYSVSSLSETQVSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLT---SDSAALKTPSM 289
Query: 128 -----------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
+ +++ETNF++YAY+ S L IL LF + + N++ G IT+ES+
Sbjct: 290 AMDEEEQQVVSKESIIIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIR 349
Query: 177 NAFENGITAEQIISFLQQNAHPRV------------------------------------ 200
NA NGITA+QII FL+ +AHP++
Sbjct: 350 NALYNGITADQIIKFLETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMIS 409
Query: 201 ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
++ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +YA + L+W D
Sbjct: 410 QHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEYDILSNYASELGVLIWAD 468
>gi|342884444|gb|EGU84659.1| hypothetical protein FOXB_04847 [Fusarium oxysporum Fo5176]
Length = 496
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 131/248 (52%), Gaps = 40/248 (16%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 118
AY+ N L+E +++M+ D GL+ + K S F PT+LAT L+
Sbjct: 251 AYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSSNSLRSISDGVAA 309
Query: 119 ----------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
S+T ++ + G V++ETN+R+YAY+ S L +L LF+K+ +
Sbjct: 310 ATAAALQPGQSGAPGGSVTAANTEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLAMRF 369
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRL 217
P+++ G I+++S+ A + GITAEQIIS+L +AH ++ + P +P V DQIRL
Sbjct: 370 PDMVAGRISRQSIRQAIQFGITAEQIISYLSAHAHDQMHRTAALNNKPVLPPTVVDQIRL 429
Query: 218 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE-DSKKMRLVVNAEIHMHMR 276
W+ + R++ T ++ F ++ +A + L+W+ D+++M A H +R
Sbjct: 430 WQLENERMKTTSGFLFKSFEDDREYKDIARFAEEVGVLVWKNDARQMFF---ASKHEQIR 486
Query: 277 EFLRGQNK 284
++++ + K
Sbjct: 487 DYMKIRKK 494
>gi|340939354|gb|EGS19976.1| RNA polymerase II transcription factor B subunit 2-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 514
Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 128/244 (52%), Gaps = 37/244 (15%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT----------- 121
AY+ + LSE +R+M+ D GL+ + + +F PT+LAT L+ S +
Sbjct: 274 AYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASALRSVSSGFTA 332
Query: 122 ---------------DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
D SA K G +++ETN+R+YAY++S L +L LF+ + + ++
Sbjct: 333 ATNNTANDASSLGGADPSAHK-GSIIIETNYRLYAYTSSPLQIAVLALFTHLNMRFAGMV 391
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESD 221
G +T+ES+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+ +
Sbjct: 392 TGRLTRESIRRAISFGITADQIISYLASHAHEQMVRAAAAAGRPVLPPTVVDQIRLWQLE 451
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLR 280
R+ +P +++F + + + A YA + L+W D K+M E +R++L+
Sbjct: 452 NERMRTSPGFLFKDFENVEEYMALAGYAEEIGVLVWRSDRKRMFFASKFE---QLRDYLK 508
Query: 281 GQNK 284
+ K
Sbjct: 509 SRKK 512
>gi|320581720|gb|EFW95939.1| TFIIH basal transcription factor complex subunit 2 [Ogataea
parapolymorpha DL-1]
Length = 544
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 40/247 (16%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD--------- 122
+ Y ++ LS+ Q+ M+ D D GL+ + F PT+LAT L+ T+
Sbjct: 289 QGYPVDPLSDTQKIMLDDLIDYGLIYTPSKTNKKIFYPTRLATTLTSEHTNFKTSAAVID 348
Query: 123 ------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
++ +G +VVETNF++Y Y++S L IL LF ++ + N++ G IT+ES+
Sbjct: 349 QEITNSKNSNNQGTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVR 408
Query: 177 NAFENGITAEQIISFLQQNAHP----RVADRIPS---------------------VPENV 211
A NGITA+Q+I++L +AHP + D++ +P V
Sbjct: 409 RALINGITADQMINYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTV 468
Query: 212 CDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEI 271
DQI+LW+ +L+R++ + Y++F + FE Y + ++W+D + R V E
Sbjct: 469 VDQIKLWQLELDRIQSFKGYLYKDFSTDLEFEKLLTYGEEIGVIVWKDRARKRFFVTQEG 528
Query: 272 HMHMREF 278
+ + ++
Sbjct: 529 NGQLLDY 535
>gi|302917488|ref|XP_003052448.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733388|gb|EEU46735.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 496
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 126/247 (51%), Gaps = 38/247 (15%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS------MSLTDS--- 123
AY+ N L+E +++M+ D GL+ + K S F PT+LAT L+ S++D
Sbjct: 251 AYDTNALTEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSGNSLRSISDGVAA 309
Query: 124 ---------------------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
+ G V++ETN+R+YAY+ S L +L LFSK+ +
Sbjct: 310 ATAAALQPGQSGGSGGSTTGSGQEQRGSVIIETNYRIYAYTQSTLQIAVLALFSKLSMRF 369
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRL 217
P+++ G ++++S+ A GITA+QIIS+L +AH ++ + P +P V DQIRL
Sbjct: 370 PDMVAGRLSRQSIRQAINFGITADQIISYLAAHAHDQMHRTAALNNKPVLPPTVVDQIRL 429
Query: 218 WESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMRE 277
W+ + R++ T +++F + A +A + L+W + K A H +R+
Sbjct: 430 WQLENERMKTTSGFLFKDFEDHKEYMAVAGFAEEVGVLVWRNDVKGMFF--ASKHEQIRD 487
Query: 278 FLRGQNK 284
+LR + K
Sbjct: 488 YLRIRKK 494
>gi|324512881|gb|ADY45318.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 481
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 116/205 (56%), Gaps = 13/205 (6%)
Query: 80 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVE 134
SE + + +LGLV +++ RK+ +F T L +L++S + +A E G+++VE
Sbjct: 264 SETITNFLMHLRELGLVFIRK-RKDGYFFITPLFAHLTVSSSSETAVAEKRTHSGYIIVE 322
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ 194
TN+R+YAY+ S L IL F+++ Y+ ++ VG +T++S+ A + GITA QIISFL+
Sbjct: 323 TNYRVYAYTDSSLQLAILSTFTEMLYRFNDMSVGMLTRDSVRRALQVGITASQIISFLRA 382
Query: 195 NAHPRV---ADRIPS----VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
NAHP A+ P VP V DQIRLWE + +R+ + Y F S + +
Sbjct: 383 NAHPETVAAANASPGVIHCVPVTVADQIRLWEDERHRLVFFDSALYSTFESEREYVGVKE 442
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIH 272
Y R + LLW D + +VV E H
Sbjct: 443 YTRSQDILLWFDDVQRLVVVTEEGH 467
>gi|68490740|ref|XP_710812.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|68490763|ref|XP_710801.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432046|gb|EAK91553.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432058|gb|EAK91564.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|238879997|gb|EEQ43635.1| TFIIH basal transcription factor complex subunit 2 [Candida
albicans WO-1]
Length = 494
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 51/237 (21%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLT 121
++Y++ +LSE Q SM+ D D GLV Q+ F PT+LAT L SM++
Sbjct: 234 KSYSVLSLSETQVSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMD 292
Query: 122 DSS---ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 178
+ A KE +++ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA
Sbjct: 293 EEEQQVATKES-IIIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNA 351
Query: 179 FENGITAEQIISFLQQNAHPRV------------------------------------AD 202
NGITA+QII FL+ +AHP++
Sbjct: 352 LYNGITADQIIKFLETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMVSQH 411
Query: 203 RIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
++ +P NV DQI+LW+ +L+R++ + +++F ++ ++ +YA + L+W D
Sbjct: 412 KLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFSNQQEYDILSNYASELGVLIWAD 468
>gi|340518979|gb|EGR49219.1| trancription factor tfb2-like protein [Trichoderma reesei QM6a]
Length = 480
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--------------- 117
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 250 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGSLG 308
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
+ + + G VV+ETN+R+YAY+ S L +L LF+K+ + P+++ G +++ S+
Sbjct: 309 LLGGGGTGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQ 368
Query: 178 AFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWESDLNRVEMTPAHY 232
A GITA+QIIS+L +AH ++ P +P V DQIRLW+ + R++ T
Sbjct: 369 AINFGITADQIISYLSAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFL 428
Query: 233 YEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ +F + ++ + L+W + N H +++FL+ + K
Sbjct: 429 FRDFTDDKDYLDTARFSEEIGVLVWRNDNTRMFFANK--HEQIKDFLKSRKK 478
>gi|367030175|ref|XP_003664371.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
gi|347011641|gb|AEO59126.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
Length = 512
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 130/244 (53%), Gaps = 35/244 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 118
AY+ + LSE +R+M+ D GL+ + + +F PT+LAT L+
Sbjct: 270 AYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASSLRSVSSGFSA 328
Query: 119 -------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
+ ++SA +G V++ETN+R+YAY++S L +L LF+++ + +
Sbjct: 329 AAANNPGDASSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGM 388
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWES 220
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+
Sbjct: 389 ATGRLTRDSIRRAIGFGITADQIISYLASHAHEQMVRAAAATGRPVLPPTVVDQIRLWQL 448
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ R+ + +++F S D + + YA + L+W+ KK R+ ++I +R++LR
Sbjct: 449 ENERMRTSAGFLFKDFDSLDEYLSLSAYAEEIGVLVWKSDKK-RMFYASKIE-QLRDYLR 506
Query: 281 GQNK 284
+ +
Sbjct: 507 SRKR 510
>gi|444320663|ref|XP_004180988.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
gi|387514031|emb|CCH61469.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
Length = 518
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 75/256 (29%), Positives = 124/256 (48%), Gaps = 58/256 (22%)
Query: 69 GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL----- 120
G LE AY++++LSE Q+ M+KD D GL+ Q+ + F PT +AT L+
Sbjct: 231 GALEFGKAYSISSLSETQKIMLKDMRDYGLI-FQKNSNANVFYPTSMATMLTSDARNVRT 289
Query: 121 -------------------------------TDSSARKEGFVVVETNFRMYAYSTSKLHC 149
+++ A +G +++ETNF++Y+YS S L
Sbjct: 290 ASGAIDHILQRSQETNKNSNNDDDEDVDQVGSNTQATADGALIIETNFKLYSYSNSPLQI 349
Query: 150 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV--------- 200
+L LF ++ + N++ G IT++S+ A NGITAEQII++L ++HP++
Sbjct: 350 AVLSLFVHLKTRFSNMVTGQITRDSIRRALRNGITAEQIIAYLLTHSHPQMRRLAEGNLE 409
Query: 201 ---------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
D + +P V DQI+LW+ +L+R+ Y +F + + YA D
Sbjct: 410 KKLELDPNAKDSLQILPPTVVDQIKLWQLELDRIISHEGSLYSDFENNQEYNLLSTYAED 469
Query: 252 RSGLLWEDSKKMRLVV 267
LLW++ KK + V
Sbjct: 470 IGVLLWKNDKKRKFFV 485
>gi|254584224|ref|XP_002497680.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
gi|238940573|emb|CAR28747.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
Length = 509
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 123/255 (48%), Gaps = 59/255 (23%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSAR---- 126
Y+ N LSE Q+ M+KD D GLV Q + F PT+LA+ L+ S+ +S
Sbjct: 240 YSTNGLSETQKVMLKDMRDYGLV-FQMNSNANVFYPTRLASMLTSDPKSIRGASGAMDSV 298
Query: 127 ---------------------------------KEGFVVVETNFRMYAYSTSKLHCEILR 153
++G ++VETNF++Y+YS S L IL
Sbjct: 299 LKQNKEDVLNKSGGAGANADDDADEIGSEGQNMQDGALIVETNFKLYSYSNSPLQIAILS 358
Query: 154 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------- 200
LF ++ + N++ G +T+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 359 LFVHMKSRFSNMVTGQLTRESIRQALLNGITADQIIAYLETHAHPQMRRMAEEQLEKRLE 418
Query: 201 -----ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGL 255
D + +P V DQI+LW+ +L+R+ Y +F + F YA+D L
Sbjct: 419 LDPNSKDPLQILPPTVVDQIKLWQLELDRIISFEGSLYSDFENHQEFTLLSSYAQDIGVL 478
Query: 256 LWEDSKKMRLVVNAE 270
+W+D +K + V+ E
Sbjct: 479 IWKDDRKKKFFVSKE 493
>gi|452977455|gb|EME77221.1| hypothetical protein MYCFIDRAFT_146475 [Pseudocercospora fijiensis
CIRAD86]
Length = 476
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 30/214 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD---------- 122
+Y+ + L++ Q M++D +DLGL+ + + PT+LAT L+
Sbjct: 228 SYSTSNLTKTQLQMLEDLSDLGLIF--HPEQSDRYYPTRLATTLTSDAPALLNSSHTSTT 285
Query: 123 ------------SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
+SA ++GF+++ETN+R+YAY+ S L IL LF+ + + PNL+ I
Sbjct: 286 TTVSASSNDDLAASANEKGFIILETNYRLYAYTNSPLLISILSLFASLHTRYPNLVTAKI 345
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHP---RVAD--RIPSVPENVCDQIRLWESDLNRV 225
TK S+ A +GIT+ QIIS+LQ +AHP R A P +P V DQIRLW+ + R+
Sbjct: 346 TKTSVQAAISSGITSNQIISYLQTHAHPILRRTASMHNAPILPPTVVDQIRLWQIEGERM 405
Query: 226 EMTPAHYYEEFPSRDVFEAACDYARDRSGLLWED 259
T + E S++ +E A YA + G+L +D
Sbjct: 406 TSTKGYLIREVGSKEDYEKAVQYA-EALGILVKD 438
>gi|255713706|ref|XP_002553135.1| KLTH0D09790p [Lachancea thermotolerans]
gi|238934515|emb|CAR22697.1| KLTH0D09790p [Lachancea thermotolerans CBS 6340]
Length = 506
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 61/262 (23%)
Query: 69 GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKL------------- 112
G LE AY+ LS+ Q+ M++D D GLV Q+ F PT+L
Sbjct: 230 GALELGKAYSDTNLSDTQKIMLQDMRDYGLV-FQKASNTHKFYPTRLTAMLTSDTSSIRS 288
Query: 113 ---ATNLSMSLTDSSARKE-----------------------GFVVVETNFRMYAYSTSK 146
A N +S SS+++E G V++ETNF++Y+YS S
Sbjct: 289 ASGAMNSVLSQGTSSSKEEAAAVAETDEETAQVGGTTQNIPDGAVILETNFKLYSYSNSP 348
Query: 147 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVADR 203
L +L LF ++ + N++ G IT+ES+ A NGITA+QII++++ +AHP R+A++
Sbjct: 349 LQIAVLSLFVHLKSRFSNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAEQ 408
Query: 204 ---------------IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
+ +P V DQI+LW+ +L+R+ + + +F + + Y
Sbjct: 409 TLDKKMELDPNCNEGLQILPPTVVDQIKLWQLELDRIISYDGYLFTDFENFQEYNMLSSY 468
Query: 249 ARDRSGLLWEDSKKMRLVVNAE 270
A+D LLW D KK R V+ E
Sbjct: 469 AKDIGVLLWSDDKKKRFFVSQE 490
>gi|358385986|gb|EHK23582.1| hypothetical protein TRIVIDRAFT_36912 [Trichoderma virens Gv29-8]
Length = 492
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 121/244 (49%), Gaps = 35/244 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------- 119
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 250 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTA 308
Query: 120 --------------LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
L S + G VV+ETN+R+YAY+ S L +L LF+K+ + P++
Sbjct: 309 ATQSAQTSQQALGPLGGSGGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDM 368
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWES 220
+ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW+
Sbjct: 369 VAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQL 428
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ R++ T + +F + ++ + L+W++ N H +++FL+
Sbjct: 429 ENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWKNDHARMFFANK--HEQIKDFLK 486
Query: 281 GQNK 284
+ +
Sbjct: 487 TRKR 490
>gi|367040709|ref|XP_003650735.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
gi|346997996|gb|AEO64399.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 128/243 (52%), Gaps = 34/243 (13%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL---------------- 116
AY+ ++L+E +R+M+ D GL+ + + +F PT+LAT L
Sbjct: 272 AYDTDSLTETRRNMLPALVDFGLIYIPREDTRQYF-PTRLATTLTSSASALRSVSSGFSA 330
Query: 117 ----------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
S+ +T + +G +++ETN+R+YAY++S L +L LF+++ + ++
Sbjct: 331 AAANNPGDAASLGMTPDTTPTKGSLIIETNYRLYAYTSSPLQIAVLALFTQLNMRFAGMV 390
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESD 221
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+ +
Sbjct: 391 TGRLTRDSIRRAISFGITADQIISYLASHAHEQMTRAAAAAGRPVLPPTVVDQIRLWQLE 450
Query: 222 LNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRG 281
R+ T +++F S + + + YA + L+W+ +K V A +R++L+
Sbjct: 451 NERMRTTAGFLFKDFDSPEEYVSLSGYAEEIGVLVWKSDRKR--VFFASKFEQLRDYLKS 508
Query: 282 QNK 284
+ K
Sbjct: 509 RKK 511
>gi|358333989|dbj|GAA34589.2| transcription initiation factor TFIIH subunit 4 [Clonorchis
sinensis]
Length = 456
Score = 123 bits (309), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 108/210 (51%), Gaps = 31/210 (14%)
Query: 71 LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSL---------- 120
L++Y ++ L+ Q+ +++ +LGL Q+ R F T LAT LS S
Sbjct: 213 LKSYPVDALTAPQQEVLQQMRELGLA-YQRKRTAPRFYVTPLATVLSGSRCHQPAMSSGS 271
Query: 121 --------------------TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEY 160
T SS G++++ETNFR+YAY+ S L +L LFSKI
Sbjct: 272 VLSAIPTGVSHLEGTDSVQPTASSTSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRA 331
Query: 161 QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWES 220
+ PNL+V IT++S+ A GITA+QIISFL NAHP + P +P + DQIRLWE
Sbjct: 332 RFPNLVVADITRDSVREALIRGITADQIISFLTTNAHPDMLREPPILPPTLVDQIRLWEL 391
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYAR 250
+ +R YE+F FE D+A+
Sbjct: 392 ERDRFVFQEGCLYEQFSKSADFEMVRDFAK 421
>gi|323306981|gb|EGA60265.1| Tfb2p [Saccharomyces cerevisiae FostersO]
Length = 448
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 121/255 (47%), Gaps = 65/255 (25%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 186 KAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMD 244
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD + + G ++VETNF++Y+YS S
Sbjct: 245 SVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNS 304
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 305 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAE 364
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 365 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSK 424
Query: 248 YARDRSGLLWEDSKK 262
YA+D LLW+D K
Sbjct: 425 YAQDIGVLLWKDDXK 439
>gi|392574410|gb|EIW67546.1| hypothetical protein TREMEDRAFT_33390 [Tremella mesenterica DSM
1558]
Length = 504
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 124/235 (52%), Gaps = 18/235 (7%)
Query: 67 CQGILEAYNLNTLSE-IQRSMIKDFADLGLV---KLQQGRKESWFIPTKLATNL------ 116
C I ++Y+L+T S Q + D GL+ G K +F PT L+T+L
Sbjct: 266 CMQITQSYSLSTFSNPTQLQALDDLQSYGLIYRPATPSGAKADYFFPTHLSTSLCSGNSA 325
Query: 117 ------SMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 170
+ + S + F+++ETN+++YAY+ ++L IL LF I+ Q NL+VG +
Sbjct: 326 LSAALNTTEIDTSHEDDKKFLILETNYKIYAYTNNELEIAILNLFMDIKVQYRNLVVGKL 385
Query: 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSV-PENVCDQIRLWESDLNRVEMTP 229
+ + A E GI+A QII++LQ +AHP++ P + + DQ+ LW+ + NR+
Sbjct: 386 DRAHVKAAMEKGISAYQIIAYLQSHAHPQMYSSPPPILHTTIVDQLHLWDKERNRLRTEE 445
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ +E F S+D++E A+ GLL K L VN + +++F++GQ +
Sbjct: 446 SEMFEFF-SKDLYEDTEAEAKRYDGLLLAVPKDKLLFVNPSVKDAIKDFVKGQQR 499
>gi|254573074|ref|XP_002493646.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|238033445|emb|CAY71467.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|328354526|emb|CCA40923.1| RNA polymerase II transcription factor B subunit 2 [Komagataella
pastoris CBS 7435]
Length = 547
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 43/238 (18%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD- 122
Y + LS+ Q M++D D GL+ + K +F PT++AT L SMS+
Sbjct: 295 YPVTLLSDTQVIMLEDLVDYGLIYYPE--KNRYFYPTRMATTLTSEKTTFKTASMSMNQV 352
Query: 123 ----SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 178
+ G +V+ETNF++Y Y+TS L IL LF + + N++ G IT+ES+ A
Sbjct: 353 LEGGPEVKDHGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMITRESVREA 412
Query: 179 FENGITAEQIISFLQQNAHPRVAD--------------------------RIPSVPENVC 212
NGITA+QII +L+ +AH ++ ++ +P V
Sbjct: 413 LRNGITADQIIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLEVIPPTVV 472
Query: 213 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 270
DQI+LW+ +++R++ +++F + FE +YA + +LW D K + V E
Sbjct: 473 DQIKLWQLEMDRLQTFAGFLFKDFANAQEFEQLANYADEVGVMLWRDDDKRKFFVTEE 530
>gi|116201905|ref|XP_001226764.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
gi|88177355|gb|EAQ84823.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
Length = 503
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 128/244 (52%), Gaps = 35/244 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM-------------- 118
AYN L+E +R+M+ D GL+ + + +F PT+LAT L+
Sbjct: 261 AYNTGALTETRRNMLPHLVDFGLIFIPREDTRQYF-PTRLATTLTSSASSLRSVSSGFNA 319
Query: 119 -------------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
+ ++SA +G V++ETN+R+YAY++S L +L LF+++ + +
Sbjct: 320 ATANNPGDTSSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQIAVLGLFTQLNMRFAGM 379
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWES 220
G +T++S+ A GITA+QIIS+L +AH ++ A P +P V DQIRLW+
Sbjct: 380 ATGRLTRDSIRRAIGFGITADQIISYLASHAHDQMVRAAAATGRPVLPPTVVDQIRLWQL 439
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ R+ + +++F S + + + YA + L+W KK R+ ++I +R++L+
Sbjct: 440 ENERMRTSAGFLFKDFDSLEEYVSLSSYADEVGVLVWRSDKK-RMFYASKIE-QLRDYLK 497
Query: 281 GQNK 284
+ K
Sbjct: 498 SRKK 501
>gi|320587960|gb|EFX00435.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Grosmannia clavigera kw1407]
Length = 518
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 124/260 (47%), Gaps = 50/260 (19%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS------------- 119
AY+ N L+E +R+M+ D GL+ + + S + PT+LAT L+ S
Sbjct: 257 AYDTNALTEARRNMLPSLMDFGLIYIPPHDRASQYFPTRLATTLTSSGAAALRSLSTGFA 316
Query: 120 ------------------------------LTDSSARKEGFVVVETNFRMYAYSTSKLHC 149
+ ++ G V++ETNFR+YAY+ S L
Sbjct: 317 AASANSTAAAGLPGTGTGSNNNHVGAASTANSAATTEGRGSVILETNFRLYAYTASPLQI 376
Query: 150 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRI 204
+L LFSK+ + P ++ G +T++S+ A GIT++QIIS+L NAH ++ A+
Sbjct: 377 AVLALFSKLSQRFPGMVAGKLTRDSVRRAISYGITSDQIISYLAANAHEQMHKYAAANHR 436
Query: 205 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 264
P +P V DQIRLWE + R++ +++F S ++ YA + L++ + KK
Sbjct: 437 PVLPPTVVDQIRLWELENERMKSHKGFLFKDFDSAKEYDMLAQYADEIGVLVYRNDKKRH 496
Query: 265 LVVNAEIHMHMREFLRGQNK 284
V H + +L+ + K
Sbjct: 497 FFVTK--HEQLVTYLKARKK 514
>gi|406604717|emb|CCH43852.1| RNA polymerase II transcription factor B subunit 2 [Wickerhamomyces
ciferrii]
Length = 488
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 42/238 (17%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM--------------- 118
Y+L+ LSE Q +M+ D D GL+ Q+ F PT+LAT L+
Sbjct: 235 YSLSALSETQVNMLGDLRDYGLI-YQRKSTSRRFYPTRLATTLTSDTTSLRSASSAMNKV 293
Query: 119 -------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 171
+ T ++ G +++ETNF++YAY+ S L IL LF ++ + NL+ G IT
Sbjct: 294 IENAKDSAYTPTNIENSGTIIIETNFKVYAYTNSPLQIAILNLFVHLKARFSNLVTGQIT 353
Query: 172 KESLYNAFENGITAEQIISFLQQNAHPRV-------------------ADRIPSVPENVC 212
+ES+ A +GIT+EQIIS+L+ +AHP++ ++I + +
Sbjct: 354 RESIRKALVSGITSEQIISYLESHAHPQLRRAAEEELNKKNGFESNNHGEKIQILQPTIA 413
Query: 213 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 270
DQI+LW+ +L+R+ + + +F S ++ Y+ + LLW DS K + V E
Sbjct: 414 DQIKLWQLELDRIMSFDGYLFTDFSSDQEYQVLSKYSEEIGVLLWNDSSKKKFFVTKE 471
>gi|449296697|gb|EMC92716.1| hypothetical protein BAUCODRAFT_259506 [Baudoinia compniacensis
UAMH 10762]
Length = 489
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 122/224 (54%), Gaps = 27/224 (12%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L +L L GI +Y+ L+ Q+ M+ D +D GLV ++ E+ + PT+LAT
Sbjct: 232 VLSFLFTLGSLELGI--SYSTTNLTPTQQQMLDDLSDFGLV-YRRSNDEARYYPTRLATT 288
Query: 116 LSMSLT-----------------------DSSARKEGFVVVETNFRMYAYSTSKLHCEIL 152
L+ +SA ++G++++ETN+R+YAY++S L IL
Sbjct: 289 LTSDAPALPNTSLTSTTSTTTLASSSTDPSASANEKGYIILETNYRLYAYTSSPLPITIL 348
Query: 153 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVC 212
LF+ ++ + PNLI +TK S+ +A +GIT++QII++L +AHP + + P +P V
Sbjct: 349 SLFATLKTRYPNLITAKLTKSSIQSAIASGITSDQIITYLTTHAHPILRRQNPVLPPTVV 408
Query: 213 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
DQIRLW+ + R+ + + + ++ A YA D G+L
Sbjct: 409 DQIRLWQIEGERMTAWKGFLIRDVGTAEEYDKAVQYA-DALGVL 451
>gi|393910939|gb|EJD76097.1| transcription factor Tfb2 family protein, variant [Loa loa]
Length = 389
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 88 KDF----ADLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSA----RKEGFVVVETNFR 138
KDF +LGLV +++ RK+ +F T L +L S+S + + GFV+VETN+R
Sbjct: 174 KDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYR 232
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP
Sbjct: 233 VYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHP 292
Query: 199 RV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
I SVP V DQIRLWE + R+ A Y F S + Y
Sbjct: 293 TTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSS 352
Query: 252 RSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 283
+ LLW D + +V+ E H ++ + + G+N
Sbjct: 353 QGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 387
>gi|393910938|gb|EFO26137.2| transcription factor Tfb2 family protein [Loa loa]
Length = 486
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 88 KDFA----DLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSA----RKEGFVVVETNFR 138
KDF +LGLV +++ RK+ +F T L +L S+S + + GFV+VETN+R
Sbjct: 271 KDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYR 329
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP
Sbjct: 330 VYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHP 389
Query: 199 RV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
I SVP V DQIRLWE + R+ A Y F S + Y
Sbjct: 390 TTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSS 449
Query: 252 RSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 283
+ LLW D + +V+ E H ++ + + G+N
Sbjct: 450 QGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 484
>gi|367009216|ref|XP_003679109.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
gi|359746766|emb|CCE89898.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
Length = 513
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 126/267 (47%), Gaps = 59/267 (22%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---------- 121
+ Y+++ LS+ Q+ M KD D GLV Q+ F PT+LAT L+
Sbjct: 238 KPYSMDGLSDTQKLMSKDMRDYGLV-FQKNSNSKVFYPTRLATMLTSDAKSIRGASGAMD 296
Query: 122 -------DSSARK-----------------------EGFVVVETNFRMYAYSTSKLHCEI 151
D ++ K +G ++VETNF++Y+YS S L I
Sbjct: 297 SVLKQNKDEASNKAASSNADADSDDDEVGINGQPIQDGALIVETNFKLYSYSNSPLQIAI 356
Query: 152 LRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----------- 200
L LF ++ + N++ G IT+ES+ A NGITA+QII++LQ +AHP++
Sbjct: 357 LSLFVHLKSRFTNMVTGQITRESIRRALINGITADQIIAYLQTHAHPQMRRLAEEKLEKK 416
Query: 201 -------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
D + +P V DQI+LW+ +L+R+ Y + S + YA+D
Sbjct: 417 LELDANCKDTLQILPPTVVDQIKLWQLELDRIISYDGSLYSDIDSHQEYILLSTYAQDIG 476
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFLR 280
LLW+D +K V+ E + + ++ +
Sbjct: 477 VLLWKDDRKRIFFVSKEGNSQVLDYAK 503
>gi|346323394|gb|EGX92992.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Cordyceps militaris CM01]
Length = 511
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/256 (30%), Positives = 127/256 (49%), Gaps = 47/256 (18%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------MSLTDS-- 123
AY+ + LSE +R M+ AD GLV + +K S F PT+LAT L+ S++D
Sbjct: 257 AYDTHALSEQRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSGLRSISDGVA 315
Query: 124 ------------------------------SARKEGFVVVETNFRMYAYSTSKLHCEILR 153
S + G VV+ETN+R+YAY+ S L +L
Sbjct: 316 AATSAARSSPSSSAHQPASSSAGSGPLGGGSGDQPGAVVIETNYRLYAYTQSTLQIAVLA 375
Query: 154 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVP 208
LF+++ + P+++ G +T+ S+ A + GITA+QII++L +AH ++ P +P
Sbjct: 376 LFARLTMRFPDMVAGRLTRTSIRQAIQFGITADQIIAYLAAHAHEQMHRTAALTNKPVLP 435
Query: 209 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVN 268
V DQIRLW+ + R++ TP + +F + +A + L+W D KK +
Sbjct: 436 PTVVDQIRLWQLENERMKTTPGFLFRDFDDPKEYHDTRRFADEIGVLVWSDDKKG--LFF 493
Query: 269 AEIHMHMREFLRGQNK 284
A +R++L+ + K
Sbjct: 494 ASKFEQIRDYLKSRKK 509
>gi|312069992|ref|XP_003137940.1| transcription factor Tfb2 family protein [Loa loa]
Length = 470
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 20/215 (9%)
Query: 88 KDFA----DLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSA----RKEGFVVVETNFR 138
KDF +LGLV +++ RK+ +F T L +L S+S + + GFV+VETN+R
Sbjct: 255 KDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTSISYASETGIENRNQNGFVIVETNYR 313
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL+ NAHP
Sbjct: 314 VYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLRANAHP 373
Query: 199 RV-------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
I SVP V DQIRLWE + R+ A Y F S + Y
Sbjct: 374 TTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEKEYFGLKGYVSS 433
Query: 252 RSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 283
+ LLW D + +V+ E H ++ + + G+N
Sbjct: 434 QGILLWCDDVQRLMVITEEGHESVKSWWKMKTGKN 468
>gi|453082965|gb|EMF11011.1| RNA polymerase II transcription factor B subunit 2 [Mycosphaerella
populorum SO2202]
Length = 507
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 30/221 (13%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L +L L G+ +Y+ + L+ Q M+ D + GLV + + ++ PT+LAT
Sbjct: 231 VLSFLFTLGSLELGV--SYSTSNLTPTQLQMLDDLTNFGLVYRRSPSSDRYY-PTRLATT 287
Query: 116 LSM---SLTDSS-------------------ARKEGFVVVETNFRMYAYSTSKLHCEILR 153
L+ +L ++S A ++G++++ETN+R+YAY++S L IL
Sbjct: 288 LTSDAPALPNNSFTTTTTTNQNADPNDPAATASEKGYIILETNYRLYAYTSSPLPISILS 347
Query: 154 LFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP-----RVADRIPSVP 208
LF+ + + PNLI ITK S++ A +GIT++QIIS+LQ +AHP + P +P
Sbjct: 348 LFASLNTRYPNLITAKITKTSIHTAIASGITSDQIISYLQTHAHPILRRQAALNSAPILP 407
Query: 209 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
V DQIRLW+ + R++ T + + + D + A YA
Sbjct: 408 PTVVDQIRLWQIEGERMKSTKGYLIRDVGTEDDYTKAVQYA 448
>gi|6325135|ref|NP_015203.1| Tfb2p [Saccharomyces cerevisiae S288c]
gi|62901134|sp|Q02939.1|TFB2_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB2; Short=TFIIH subunit TFB2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|1163092|gb|AAB68240.1| Tfb2p: TFIIH subunit [Saccharomyces cerevisiae]
gi|1778059|gb|AAB40628.1| transcription/repair factor TFIIH subunit Tfb2, partial
[Saccharomyces cerevisiae]
gi|151942676|gb|EDN61022.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190407835|gb|EDV11100.1| RNA polymerase II transcription factor B subunit 2 [Saccharomyces
cerevisiae RM11-1a]
gi|256274256|gb|EEU09164.1| Tfb2p [Saccharomyces cerevisiae JAY291]
gi|259150035|emb|CAY86838.1| Tfb2p [Saccharomyces cerevisiae EC1118]
gi|285815419|tpg|DAA11311.1| TPA: Tfb2p [Saccharomyces cerevisiae S288c]
gi|323331200|gb|EGA72618.1| Tfb2p [Saccharomyces cerevisiae AWRI796]
gi|323335024|gb|EGA76314.1| Tfb2p [Saccharomyces cerevisiae Vin13]
gi|323346175|gb|EGA80465.1| Tfb2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352000|gb|EGA84539.1| Tfb2p [Saccharomyces cerevisiae VL3]
gi|365762780|gb|EHN04313.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392295887|gb|EIW06990.1| Tfb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 513
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 65/273 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 235 KAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMD 293
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD + + G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAE 413
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 414 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSK 473
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA+D LLW+D KK + ++ E + + +F +
Sbjct: 474 YAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>gi|170589001|ref|XP_001899262.1| Transcription factor Tfb2 family protein [Brugia malayi]
gi|158593475|gb|EDP32070.1| Transcription factor Tfb2 family protein [Brugia malayi]
Length = 465
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 113/206 (54%), Gaps = 17/206 (8%)
Query: 87 IKDFA----DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVETNF 137
IKDF +LGLV +++ RK+ +F T L +L+ S A E GFV+VETN+
Sbjct: 249 IKDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTGISNTSEAGMENRNQNGFVIVETNY 307
Query: 138 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 197
R+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL +NAH
Sbjct: 308 RVYAYTDSNLQLAILSTFTEMLYRFSDMSVGVLSREAVRRAFQVGITAAQIIAFLSRNAH 367
Query: 198 P-------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 250
P I SVP V DQI+LWE + R+ A Y F S + Y
Sbjct: 368 PITCAVTTEYGRMIQSVPITVVDQIQLWEDERRRLTFCSAAVYSSFESEKEYFGLKGYVI 427
Query: 251 DRSGLLWEDSKKMRLVVNAEIHMHMR 276
++ LLW + +V+ E H +++
Sbjct: 428 SQNILLWCHDVQRLMVITEEGHENVK 453
>gi|323302721|gb|EGA56527.1| Tfb2p [Saccharomyces cerevisiae FostersB]
Length = 505
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 130/271 (47%), Gaps = 65/271 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 235 KAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMD 293
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD + + G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAE 413
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 414 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSK 473
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
YA+D LLW+D KK + ++ E + + +F
Sbjct: 474 YAQDIGVLLWKDDKKKKFFISKEGNSQVLDF 504
>gi|401623322|gb|EJS41426.1| tfb2p [Saccharomyces arboricola H-6]
Length = 513
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 65/273 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM---------SLTD 122
+AY ++ LS+ QR M++D D GLV Q+ ++ F PTKLA L+ + D
Sbjct: 235 KAYKIDALSDTQRIMLQDMRDYGLV-FQKHSNDTIFYPTKLALMLTSDTKTIRSASNAMD 293
Query: 123 SSARK-------------------------------------EGFVVVETNFRMYAYSTS 145
S R+ +G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSANEEGANGKATTDTTTSDDLNKADLKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITAEQII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITAEQIIAYLETHAHPQMRRLAE 413
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 414 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVMTYEGSLYSDFETSQEYNVLNK 473
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA+D LLW+D KK + ++ E + + +F +
Sbjct: 474 YAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 142/295 (48%), Gaps = 49/295 (16%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVF-QRGLLIQSILRSL--------KF 65
L+ YA+ +WEC L ++ S + S ++ V GL+ + + +F
Sbjct: 107 LDKYALERWECVLHFMVGSTEGTE--GVSKDIIDVLLNAGLMTMDGVDPMPSITPAGFQF 164
Query: 66 LCQGI--------------LEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTK 111
L I +EA ++ + + F+ LG K+Q+ + PT+
Sbjct: 165 LLMDIGSQVWYFMLQYLDTVEARGMDLIDCLSFLFQLSFSTLGKRKIQR------YYPTR 218
Query: 112 LATNLSMSLTD--SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
LA NL+ +D S + G+++VETN+R+YAY+ S L ++ LF ++ Y+ P VG
Sbjct: 219 LAINLAAGQSDFTSVGKNTGYLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGN 278
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTP 229
+T+ S+ +A GITA+Q P +P V DQ+RLWE + +R +
Sbjct: 279 LTRVSVRDALIRGITADQT----------------PVIPSTVTDQVRLWELERDRFKFME 322
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
Y++F S++ FE DYA+D LLW+++ K +VV H ++ + + Q +
Sbjct: 323 GVLYDQFLSQNDFELLRDYAKDLGVLLWDNAIKRVMVVTKGGHDDVKRYWKRQKQ 377
>gi|326435722|gb|EGD81292.1| hypothetical protein PTSG_11329 [Salpingoeca sp. ATCC 50818]
Length = 545
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL--SMSLTDSSARKEGFV 131
Y L++ + +++ F+ +GL + +K + PT+LA L S +L A + GF+
Sbjct: 235 YPTEVLNKTEHLVLRHFSKIGLC-YHRKKKSKQYYPTRLALALRTSSALVAKDAMRCGFL 293
Query: 132 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 191
V+ETNFR+YAY+ S L +L+LF+K Y+LP ++V +IT+ S+ A GITA QI+ F
Sbjct: 294 VIETNFRIYAYTKSDLKISLLKLFAKPLYKLPTMLVASITRSSVRQAMAQGITARQILHF 353
Query: 192 LQQNAHPRVADRIPS----VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
L+ + R+ + S VP V DQI LWE + +R+ T + P + +F
Sbjct: 354 LKVHCSSRMRHQPHSVFSPVPPTVSDQILLWEQETSRLSKTEGVLFRHLP-KPIFPKLLA 412
Query: 248 YARDRSGLLWEDSKKMRLV 266
+ ++R +W D K ++
Sbjct: 413 FVKERQACIWYDETKRAII 431
>gi|349581695|dbj|GAA26852.1| K7_Tfb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 513
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 65/273 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LS+ QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 235 KAYKIDALSQTQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMD 293
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD + + G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAE 413
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 414 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSK 473
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA+D LLW+D KK + ++ E + + +F +
Sbjct: 474 YAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>gi|358394641|gb|EHK44034.1| hypothetical protein TRIATDRAFT_222970 [Trichoderma atroviride IMI
206040]
Length = 491
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 118/244 (48%), Gaps = 35/244 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF-- 130
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+ EG
Sbjct: 249 AYDTNALTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTA 307
Query: 131 -------------------------VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 165
VV+ETN+R+YAY+ S L +L LF+K+ + P++
Sbjct: 308 ATQSAQTSQQSLGPLGGGGEQQSGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDM 367
Query: 166 IVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA-----DRIPSVPENVCDQIRLWES 220
+ G +++ S+ A GITA+QIIS+L +AH ++ P +P V DQIRLW+
Sbjct: 368 VAGRLSRASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQL 427
Query: 221 DLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ R++ T + +F + ++ + L+W + N H +++FL+
Sbjct: 428 ENERMKTTSGFLFRDFTDDKDYLDTARFSEEIGVLVWRNDHARMFFANK--HEQIKDFLK 485
Query: 281 GQNK 284
+ +
Sbjct: 486 TRKR 489
>gi|402592023|gb|EJW85952.1| transcription factor Tfb2 family protein [Wuchereria bancrofti]
Length = 470
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 116/216 (53%), Gaps = 20/216 (9%)
Query: 87 IKDFA----DLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVETNF 137
IKDF +LGLV +++ RK+ F T L +L+ S A E GFV+VETN+
Sbjct: 254 IKDFLIHLRELGLVFIRK-RKDGVFFLTPLLNHLTGISNTSEASMENRNQHGFVIVETNY 312
Query: 138 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 197
R+YAY+ S L IL F+++ Y+ ++ VG +++E++ AF+ GITA QII+FL NAH
Sbjct: 313 RVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIAFLSTNAH 372
Query: 198 P-------RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR 250
P I SVP V DQI+LWE + R+ A Y F S + Y
Sbjct: 373 PITYAVTTEYGRMIQSVPITVADQIQLWEDERRRLTFCNATVYSSFESEKEYFGLKGYVI 432
Query: 251 DRSGLLWEDSKKMRLVVNAEIHMHMREFLR---GQN 283
++ LLW + +V+ E H +++ + + G+N
Sbjct: 433 SQNILLWCHDVQRLMVITEEGHENVKAWWKMKTGKN 468
>gi|400597688|gb|EJP65418.1| RNA polymerase II transcription factor B subunit 2 [Beauveria
bassiana ARSEF 2860]
Length = 507
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 125/258 (48%), Gaps = 50/258 (19%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS--------- 123
AY+ N L+E +R M+ AD GLV + +K S F PT+LAT L+ + S
Sbjct: 252 AYDTNALTEHRRDMLPALADFGLVYIPP-QKRSMFFPTRLATTLTSGASSSLRSISEGVV 310
Query: 124 -------------------------------SARKEGFVVVETNFRMYAYSTSKLHCEIL 152
+ + G +V+ETN+R+YAY+ S L +L
Sbjct: 311 AATSAALSASSSSSTHQDQNHQSRAGPLGAGAGDQIGSIVIETNYRLYAYTQSTLQIAVL 370
Query: 153 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPS 206
LFS++ + P+++ G IT+ S+ A + GITA+QII++L +AH + +A R P
Sbjct: 371 ALFSRLTMRFPDMVAGRITRTSIRQAIQFGITADQIIAYLAAHAHEQMHRSAALAAR-PV 429
Query: 207 VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 266
+P V DQIRLW+ + R++ T + +F + ++ +A + L+W K
Sbjct: 430 LPPTVVDQIRLWQLENERMKTTGGFLFRDFDDQKEYQDTRRFADEIGVLVWSSDKTGMFF 489
Query: 267 VNAEIHMHMREFLRGQNK 284
A +R++L+ + K
Sbjct: 490 --ASKFEQIRDYLKSRKK 505
>gi|452824378|gb|EME31381.1| transcription initiation factor TFIIH subunit H4 [Galdieria
sulphuraria]
Length = 740
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 109/211 (51%), Gaps = 23/211 (10%)
Query: 60 LRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQG---RKESWFIPTKLATNL 116
L L F G+ AY+ TLS+ Q+ I ADLGL+ L K+S+F T L L
Sbjct: 243 LFELSFCASGV--AYHWKTLSKTQQIYIPYLADLGLIYLHISSSLEKDSYFYVTPLGVTL 300
Query: 117 SMS------------LTD-SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
+ S L D S+ + ++V+TNFR+Y Y+ +L LF + Y+LP
Sbjct: 301 TRSICWLGDKNNYLLLEDWSNVDNDCRMIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLP 360
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 223
N+ VG IT++S+ A NGITA+Q+IS+LQ + HP + ++P + DQIRLWE+
Sbjct: 361 NMAVGVITRDSIRTALNNGITAQQMISYLQNHMHPNMKGKLPIT---IIDQIRLWEAQRF 417
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSG 254
RV A + F + FE Y R G
Sbjct: 418 RVTTKHALLLDHFDNMTCFEKT--YGTTRIG 446
>gi|402083674|gb|EJT78692.1| RNA polymerase II transcription factor B subunit 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 496
Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 123/241 (51%), Gaps = 32/241 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSM------------- 118
+AY+ LSE +R+M+ D GLV + G +F PT+LAT L+
Sbjct: 257 QAYDTEELSEQRRNMLPSLVDFGLVYIPPGNTSQYF-PTRLATTLTSGSSALRSASSALA 315
Query: 119 ---------SLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
S S +G +++ETN+R+YAY+++ L IL LF+++ ++ ++ G
Sbjct: 316 AATAEGPNASGGGQSEAAKGSIIIETNYRLYAYTSTPLQIAILGLFAELRFRFAGMVTGR 375
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHP---RVAD--RIPSVPENVCDQIRLWESDLNR 224
+ +ES+ A GITA+Q+I +L +AH R A + P +P V DQIRLW+ + R
Sbjct: 376 LDRESIKRAISYGITADQVIEYLAAHAHEQMHRTATLRKKPVLPPTVVDQIRLWQLETER 435
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW-EDSKKMRLVVNAEIHMHMREFLRGQN 283
+++ + +F S+ ++ YA + LLW D++++ + + FL+ +
Sbjct: 436 MKIMRGFLFRDFDSQAEYDDLAKYADEIGVLLWRSDARQLFFASKVD---QLSVFLKARK 492
Query: 284 K 284
K
Sbjct: 493 K 493
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 20/199 (10%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFV 131
++Y +++L+ IQ ++++ D G+V ++ + F PT+LAT L+ + E +
Sbjct: 125 QSYLISSLTPIQIQVLENLKDYGIVYRRKSSRR--FYPTRLATILT-------SNSEILI 175
Query: 132 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 191
S L +L LF + + NL+VG IT+ S+ AF NGITAEQIIS+
Sbjct: 176 -----------RHSPLQIAVLNLFVHLYLRFSNLVVGVITRNSVRQAFMNGITAEQIISY 224
Query: 192 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARD 251
L AHP++ P +P V DQIRLWE + NR++ T + + +F S FE A YA +
Sbjct: 225 LTSYAHPQMKKNTPIIPPTVNDQIRLWEMERNRLKATEGYLFRDFNSNSDFELALKYANE 284
Query: 252 RSGLLWEDSKKMRLVVNAE 270
+ ++WE K VN +
Sbjct: 285 LNVVVWEAPSKRVFFVNIQ 303
>gi|322697444|gb|EFY89224.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium acridum CQMa 102]
Length = 541
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/266 (28%), Positives = 124/266 (46%), Gaps = 58/266 (21%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--------------- 117
AY+ N L+E +R+M+ D GL+ + Q K S F PT+LAT L+
Sbjct: 278 AYDTNALTEQRRNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATALTSGGGSLRTISEGVAA 336
Query: 118 ---------------------------------MSLTDSSARKEGFVVVETNFRMYAYST 144
SA ++G V+VETN+R+YAY+
Sbjct: 337 ATAAAGPSSHEGVAAATAAAGPSSQSGSGSGGAGGPLGPSADQKGSVIVETNYRIYAYTQ 396
Query: 145 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR----- 199
S L +L LF K+ + P+++ G +T+ S++ A GITA+QIIS+L +AH +
Sbjct: 397 STLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGITADQIISYLAAHAHEQMHRTA 456
Query: 200 -VADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
+A++ P +P V DQIRLW+ + R++ T + +F F +A + L+W
Sbjct: 457 ALANK-PILPPTVVDQIRLWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEIGVLVWR 515
Query: 259 DSKKMRLVVNAEIHMHMREFLRGQNK 284
K N + +R++L+ + +
Sbjct: 516 SDKSGMFFANK--YEQIRDYLKSRKR 539
>gi|302405781|ref|XP_003000727.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
gi|261360684|gb|EEY23112.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
Length = 476
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 26/246 (10%)
Query: 63 LKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--TKLATNL 116
L FL Q ILE Y+ LS+ ++ M+ D GLV + + +F+ + TN+
Sbjct: 232 LSFLFQLSILELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNV 291
Query: 117 SM---SLTDS----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
S +LTD + ++VETN+R+YAY+TS+L +L LF + + P
Sbjct: 292 STATRTLTDGMNALSQSQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFP 351
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLW 218
++ G +T++S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW
Sbjct: 352 GMVSGRLTRQSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLW 411
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ + R++ T + +F + +A + L W + +K A H +R++
Sbjct: 412 QLENERMKTTSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDY 469
Query: 279 LRGQNK 284
L+ + K
Sbjct: 470 LKLRKK 475
>gi|346972761|gb|EGY16213.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
dahliae VdLs.17]
Length = 476
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 126/246 (51%), Gaps = 26/246 (10%)
Query: 63 LKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--TKLATNL 116
L FL Q ILE Y+ LS+ ++ M+ D GLV + + +F+ + TN+
Sbjct: 232 LSFLFQLSILELDEVYDTEALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNV 291
Query: 117 SM---SLTDS----------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLP 163
S +LTD + ++VETN+R+YAY+TS+L +L LF + + P
Sbjct: 292 STATRTLTDGMNALSQPQGGPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFP 351
Query: 164 NLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLW 218
++ G +T++S+ A + GITA+QIIS+L +AH ++ AD P +P V DQIRLW
Sbjct: 352 GMVSGRLTRQSVRQAIDFGITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLW 411
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ + R++ T + +F + +A + L W + +K A H +R++
Sbjct: 412 QLENERMKTTSGFLFRDFDDDAEYRDIARFADEIGVLAWRNDRKRMFF--ASKHEQIRDY 469
Query: 279 LRGQNK 284
L+ + K
Sbjct: 470 LKLRKK 475
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 15/196 (7%)
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR-KEGFVVVETNFRMYAYST 144
++K LG++KL KES I + L ++S R + F++VETN ++YAY+
Sbjct: 230 LLKYLEALGILKLY---KESLAIGKSF-----VQLFEASERNRREFIIVETNNKIYAYTN 281
Query: 145 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 204
S+ ++ LF + LPNLI G+IT+ES+ AF+ GIT +QII FL+ + P
Sbjct: 282 SEYEKSVIHLFCSVSVNLPNLIKGSITEESVNVAFDKGITGKQIIHFLEASVKP------ 335
Query: 205 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 264
S+P + QI +WES NR+ M P + Y F + ++ ++ +RS L+ D K
Sbjct: 336 GSLPPAISSQIMIWESKRNRIFMAPGYIYSNFLNLSDYQRVLEFCTERSYLIESDVDKRM 395
Query: 265 LVVNAEIHMHMREFLR 280
+VV E H ++EF++
Sbjct: 396 IVVKVEGHELVKEFIK 411
>gi|223993063|ref|XP_002286215.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
gi|220977530|gb|EED95856.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
Length = 461
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 31/225 (13%)
Query: 60 LRSLKFL-CQG---ILEAYNLNTL-SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT 114
+ +L FL C G + E Y + L S+ R++++DF+ GL+ + + ++ F PT+ A
Sbjct: 241 MEALSFLICLGSCRVGEGYQSSVLGSKSARALMRDFSRFGLLFVCRVAGKNSFYPTRAAV 300
Query: 115 NLSMSLTDSS----------------ARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKI 158
NL S + +R VVV+TNF++ AY+ SKLH L LF +
Sbjct: 301 NLVASSEKAGRQASDLMGQTLAAPVPSRSHLAVVVQTNFQVVAYTKSKLHISTLGLFCDV 360
Query: 159 EY--QLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP--RVADRIPSVPENVCDQ 214
+LPN+I IT++S+ +AF G+TA+QI+ FL +AHP R DR P VP NV DQ
Sbjct: 361 SSFRRLPNVIFFHITRDSIRSAFRLGVTADQILRFLHVHAHPMLRSGDR-PMVPSNVVDQ 419
Query: 215 IRLWESDLNRVEMTPAHYYEEFPSRDV--FEAACDYARDRSGLLW 257
I LW+ + +RV M ++ RD F A YA D L W
Sbjct: 420 ILLWDRERHRVVMDEVCVHQ---CRDAAEFTAVSQYASDVDALAW 461
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 96/164 (58%), Gaps = 7/164 (4%)
Query: 118 MSLTDSSAR-KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
+ L ++S R + F++VETN ++YAY+ S+ ++ LF + LPNLI G+IT+ES+
Sbjct: 254 VQLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSVSLPNLIKGSITEESVN 313
Query: 177 NAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
AF+ GIT +QII FL+ + P S+P + QI +WES NR+ M P + Y F
Sbjct: 314 VAFDKGITGKQIIHFLEASVKP------GSLPPAITSQIMIWESKRNRIFMVPGYIYSNF 367
Query: 237 PSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ ++ ++ +RS L+ D K +VV E H +REF++
Sbjct: 368 LNLSDYQRVLEFCTERSYLIESDVGKRMIVVKLEGHELVREFIK 411
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 50/252 (19%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----------SMSLTD 122
AY+ + L+E +R+M+ D GL+ + ++ F PT+LAT L S + T
Sbjct: 253 AYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTASALRTVSSAFTA 310
Query: 123 SSARKEG-------------------------FVVVETNFRMYAYSTSKLHCEILRLFSK 157
++A G +++ETN+R+YAY+TS L +L LF +
Sbjct: 311 ATANPSGEPGTTTSTSGGPAGATPADKTGTSKGIIIETNYRIYAYTTSPLQIAVLALFCQ 370
Query: 158 IEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVC 212
+ + PN++ A+ A GITA+QIIS+L +AH ++ +P V
Sbjct: 371 LNMRFPNMVSAAL------RAIGFGITADQIISYLHAHAHQQMVREATVTGKTVLPPTVV 424
Query: 213 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 272
DQIRLW+ + R++ T +++F S + + A YA + L+W++ K R + A H
Sbjct: 425 DQIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDK--RQLFFASKH 482
Query: 273 MHMREFLRGQNK 284
+R++L+ + K
Sbjct: 483 EQLRDYLKSRKK 494
>gi|303388087|ref|XP_003072278.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301417|gb|ADM10918.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
Length = 414
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 114/203 (56%), Gaps = 17/203 (8%)
Query: 80 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-MSLTDSSAR-KEGFVVVETNF 137
S + + ++K LG++KL LA S + L ++S R + F++VETN
Sbjct: 224 SSMDKRLLKYLEVLGILKLY---------GENLAIRRSFVQLFEASERNRREFIIVETNN 274
Query: 138 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAH 197
++YAY+ S+ ++ LF + + LPNL G+IT+ES+ AF+ GIT QII FL+ ++
Sbjct: 275 KIYAYTNSEYEKSVIHLFCNVSFNLPNLTKGSITEESVNAAFDKGITGRQIIHFLEASSK 334
Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 257
P S+P + +QI +WES NR+ M P + Y F + ++ ++ +R+ L+
Sbjct: 335 P------GSLPPAIINQIIIWESKRNRIFMAPGYLYSNFLNLSDYQKVLEFCSERNYLIE 388
Query: 258 EDSKKMRLVVNAEIHMHMREFLR 280
D + +VVN + H+ ++EF++
Sbjct: 389 SDIDRRMIVVNPKGHVFVKEFIK 411
>gi|401887601|gb|EJT51582.1| hypothetical protein A1Q1_07170 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699646|gb|EKD02845.1| hypothetical protein A1Q2_02789 [Trichosporon asahii var. asahii
CBS 8904]
Length = 451
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 117/207 (56%), Gaps = 15/207 (7%)
Query: 87 IKDFADLGLVKLQQ---GRKESWFIPTKLATNLSMSLTD----SSARKEGFVVVETNFRM 139
+ D G + +Q GRK F PT LAT+L T ++A + F+++ETN+R+
Sbjct: 237 LDDLEQYGFIYRRQEVDGRKTDQFFPTHLATSLCSGDTSVNRSATADDKRFLILETNYRV 296
Query: 140 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR 199
YAY++++L IL LF I + PNLIVG + + + A + GI+A QIIS+L +AHP+
Sbjct: 297 YAYTSNELEIAILNLFVNITIRYPNLIVGHLDRRHVKAAMDKGISAYQIISYLTTHAHPQ 356
Query: 200 VADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
+ + P + +V DQ+ LW+ + NRV+ + EF S+++FE D A +R G L
Sbjct: 357 MYNHPPPLLHPSVTDQLHLWDRERNRVQAQDTVMF-EFYSKELFETCRDEA-ERMGALQH 414
Query: 259 DSKKMR-----LVVNAEIHMHMREFLR 280
++ + + V+ I +R+F++
Sbjct: 415 SVQRGQGMAKLIFVDPTIRESLRDFIK 441
>gi|322711210|gb|EFZ02784.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium anisopliae ARSEF 23]
Length = 540
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 125/262 (47%), Gaps = 54/262 (20%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD---------- 122
AY+ N L+E +++M+ D GL+ + Q K S F PT+LAT L+ +
Sbjct: 281 AYDTNALTEQRKNMLPSLLDFGLIYIPQ-HKRSMFFPTRLATTLTSGGSSLRTISEGVAA 339
Query: 123 ------------------------------SSARKEGFVVVETNFRMYAYSTSKLHCEIL 152
SA ++G V+VETN+R+YAY+ S L +L
Sbjct: 340 ATAAATTTAPAGGPSSQSGSGSGGTGGPLGPSADQKGSVIVETNYRIYAYTQSTLQIAVL 399
Query: 153 RLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPS 206
LF K+ + P+++ G +T+ S++ A GI+A+QIIS+L +AH + +A++ P
Sbjct: 400 ALFCKLNMRFPDMVAGRVTRTSIHQAINFGISADQIISYLAAHAHEQMHRSAALANK-PI 458
Query: 207 VPENVCDQIRLWESDLN----RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKK 262
+P V DQIRLW+ + R++ T + +F F +A + L+W K
Sbjct: 459 LPPTVVDQIRLWQLEWQLENERMKTTGGFLFRDFEDHKEFLDTARFAEEIGVLVWRSDKS 518
Query: 263 MRLVVNAEIHMHMREFLRGQNK 284
N + +R++L+ + +
Sbjct: 519 GMFFANK--YEQIRDYLKSRKR 538
>gi|366991461|ref|XP_003675496.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
gi|342301361|emb|CCC69129.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
Length = 516
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/272 (28%), Positives = 127/272 (46%), Gaps = 64/272 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT---------- 121
+ Y+++ LSE Q+ M+KD D GLV Q+ + F PT LA L+
Sbjct: 240 KGYSIDGLSETQKIMLKDMRDYGLV-FQKYTNSNLFYPTNLALMLTSDTKSIVRTASGAL 298
Query: 122 ---------DSSARK--------------------------EGFVVVETNFRMYAYSTSK 146
DSS + +G +++ETNF++Y+YS S
Sbjct: 299 ESVLQNKREDSSKQANGEINKDLITNGDELDQVGYNPQDIPDGSLIIETNFKLYSYSNSP 358
Query: 147 LHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------ 200
L L LF ++ + N++ G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 359 LQIATLSLFVHLKSRFANMVTGQITRESIRRALINGITADQIIAYLETHAHPQMRRLAEE 418
Query: 201 ------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDY 248
D + +P V DQI+LW+ +L+RV Y +F + + Y
Sbjct: 419 RLEKKLELDPNSKDPLQVLPPTVVDQIKLWQLELDRVITYEGSLYSDFETIAEYTTLSKY 478
Query: 249 ARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
A+D LLW+D KK + V+ E + + ++ +
Sbjct: 479 AQDIGVLLWKDDKKKKFFVSKEGNSQVLDYAK 510
>gi|361130709|gb|EHL02459.1| putative RNA polymerase II transcription factor B subunit 2 [Glarea
lozoyensis 74030]
Length = 210
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/205 (30%), Positives = 109/205 (53%), Gaps = 32/205 (15%)
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE----------------G 129
M+++ D GLV + K+ +F PT+LAT L+ +D+SA + G
Sbjct: 1 MLENLVDFGLVYIPPSVKDQFF-PTRLATTLT---SDASALRSITAGFESALSTGSGTAG 56
Query: 130 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 189
F+++ETN+ S L +L LF+K+ + PN++ G +T+ES+Y A +GI+++QII
Sbjct: 57 FIIIETNYH------SPLQIAVLALFTKLTTRYPNMVTGRVTRESVYRAVSSGISSDQII 110
Query: 190 SFLQQNAHPRV------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
++L +AHP + P +P V DQIRLW+ + R++ T +++F S D ++
Sbjct: 111 TYLSTHAHPELLKASAAKGGGPVLPPTVVDQIRLWQIENERMKTTYGFLFKDFESTDEYK 170
Query: 244 AACDYARDRSGLLWEDSKKMRLVVN 268
YA + L W + + V+
Sbjct: 171 KLLKYADEIGVLTWASKTEEKFFVS 195
>gi|310799661|gb|EFQ34554.1| transcription factor tfb2 [Glomerella graminicola M1.001]
Length = 485
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 136/286 (47%), Gaps = 38/286 (13%)
Query: 23 WECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEI 82
W LL L ++ AE S+ M F L + R Y+ N L+E
Sbjct: 211 WTLLLLWLEATDHAEDAAGMESTDMLSFLFLLASLELGRP-----------YDTNALTEA 259
Query: 83 QRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL--------------SMSLTDSSA--- 125
+R+M+ D GL+ + + + +F PT+LAT L S + S A
Sbjct: 260 RRNMLPSLLDFGLIYIPSHKPQQYF-PTRLATTLTSSSSALSYAHCRDSETFFQSYASHL 318
Query: 126 --RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGI 183
R F + ETN+R+YAY + L +L LF K++ + +++ G +T+ S+ NA E GI
Sbjct: 319 MIRVRPFRLSETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGI 378
Query: 184 TAEQIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPS 238
TA+QIIS+L +AH ++ A P +P V DQIRLW+ + R+ T + +F S
Sbjct: 379 TADQIISYLAAHAHEQMHRMAAARSRPILPPTVIDQIRLWQLETERMTTTSGFLFRDFDS 438
Query: 239 RDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
++ YA + L+W + K A H +R++L+ + K
Sbjct: 439 PREYDDIAGYAAEIGVLVWRNDKLGMFF--ASKHEQIRDYLKLRKK 482
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPR---VADRIPSVPENVCDQIRLWESDLN 223
VG IT+ES+ A ++GITA QIISFL+ NAHP+ + I +P V DQIRLWE +
Sbjct: 3 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERR 62
Query: 224 RVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
R+++ A+ Y F S D F+ CDYA++R LLW ++++ ++VN E H ++R++ +
Sbjct: 63 RMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 119
>gi|429962184|gb|ELA41728.1| hypothetical protein VICG_01232 [Vittaforma corneae ATCC 50505]
Length = 449
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 8/155 (5%)
Query: 130 FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQII 189
F+V+ETNF++YAY+++ +L LFSK Y PNLI +ESL +AF GITA+QII
Sbjct: 303 FIVLETNFKIYAYTSTAYDKSVLSLFSKTVYVFPNLIKACFDEESLLSAFNKGITAKQII 362
Query: 190 SFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
+LQ+++ VP+N+ +QI +WE +R+ + Y +F F Y
Sbjct: 363 KYLQEHS--------EEVPKNIVNQISIWEHRQHRIRARNGYLYHDFIHLSDFHRVLRYV 414
Query: 250 RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ GL++ D K +V IH ++ F++ K
Sbjct: 415 ESKGGLIYRDEVKRMIVGEERIHESVKNFIKEMQK 449
>gi|405123868|gb|AFR98631.1| transcription factor TFIIH complex subunit Tfb2 [Cryptococcus
neoformans var. grubii H99]
Length = 481
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 119/220 (54%), Gaps = 9/220 (4%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPTKLATNL----SMSLT 121
C + + Y+ + + + D A G + K G + W PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASKSFPHAQEALDDLAQYGFIYKSSPGSDQFW--PTHLATSLCSGDASAIQ 312
Query: 122 DSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFEN 181
SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E
Sbjct: 313 SQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEK 372
Query: 182 GITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 240
GI+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S++
Sbjct: 373 GISAGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMYEFF-SKE 431
Query: 241 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+F+ + A+ + L + + L + + EF++
Sbjct: 432 LFDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|194388768|dbj|BAG60352.1| unnamed protein product [Homo sapiens]
Length = 386
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/181 (35%), Positives = 106/181 (58%), Gaps = 17/181 (9%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 221 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 266
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 267 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 325
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 326 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 385
Query: 204 I 204
+
Sbjct: 386 V 386
>gi|440493551|gb|ELQ76006.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Trachipleistophora
hominis]
Length = 426
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
L S+A ++ F++VETN+++YAY+TS I++LFS+I +LPNL+ IT+ES+ AF
Sbjct: 269 LFSSAAIQDSFLIVETNYKLYAYTTSSHELSIIKLFSQIVRELPNLVTAHITEESVNAAF 328
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
GIT +QI+ +L + + +P V +QI +WE +R++ A Y F +
Sbjct: 329 LKGITGQQIVDYLTEKSKSE-------LPPVVLEQILIWERQRDRMKCIDAVIYSHFMTY 381
Query: 240 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+ +E Y R++ L+ D + LVV E H ++ F++ K
Sbjct: 382 NEYEITYRYCREKGALIDHDEFRRLLVVRLECHNEVKNFIKNNIK 426
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 84/139 (60%)
Query: 145 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI 204
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 2 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 61
Query: 205 PSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMR 264
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 62 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRL 121
Query: 265 LVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 122 MVVTPAGHSDVKRFWKRQK 140
>gi|300707677|ref|XP_002996037.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
gi|239605297|gb|EEQ82366.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
Length = 403
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 126/240 (52%), Gaps = 32/240 (13%)
Query: 59 ILRSLKFLC-QGILEAYNLNTLSEI-----------QRSMIKDFAD----LGLVKLQQGR 102
I+ +LKF C IL+ N ++ E+ ++ + K F D LGL+KL+
Sbjct: 177 IIAALKFYCVDEILQISNFMSIMELSNMLPIYKYKLKKDVNKKFYDFLSYLGLIKLEND- 235
Query: 103 KESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL 162
+ T S +K F+++ETNF++YAY++S I++LFS I ++
Sbjct: 236 ---------ILTIYHNLFVKSDTKKLRFILLETNFKLYAYTSSVYEMSIIQLFSNIYLKM 286
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222
PNLI +IT+ESL NAF G+T++QII+FL+ ++ D +P + QI +WE+
Sbjct: 287 PNLIKASITEESLSNAFSKGVTSQQIINFLK--SYSLFED----IPVAIISQIIIWETKR 340
Query: 223 NRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQ 282
R+++ P + Y F + ++ + ++ +D +K +V+ + + +++F++ Q
Sbjct: 341 KRIKIFPGYLYSNFLNLIDYQKVVKFCLSNDCIIEKDDEKRMIVIKPDHNEVVKKFVKQQ 400
>gi|321265552|ref|XP_003197492.1| subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Cryptococcus gattii WM276]
gi|317463972|gb|ADV25705.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes,
putative [Cryptococcus gattii WM276]
Length = 481
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTD 122
C + + Y+ + + + D A G + + F PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASNSFPHAQEALNDLAQYGFI-YKPSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 183 ITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
I+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMYEFF-SKEL 432
Query: 242 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
F+ + A+ + L + + L + + EF++
Sbjct: 433 FDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|392594381|gb|EIW83705.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 393
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 112/248 (45%), Gaps = 70/248 (28%)
Query: 10 PTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQR-GLLIQSILRSLKFLCQ 68
P++E L+ YA+ +WE L ++SS Q + PT + ++ + QR GL+ +L+
Sbjct: 141 PSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSS 200
Query: 69 G--------------------------------------------ILEAYNLNTLSEIQR 84
G + Y+ LSE Q+
Sbjct: 201 GFQFLLYSPRDQLWDLLLQYLHMVEERQMDLVEVLSFFFMLSTMELGREYSTEPLSETQK 260
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNL---SMSLTDSSARK-------------- 127
+M++D D GLV Q+ F PT+LAT L S SL + +
Sbjct: 261 AMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPGSAPGASSVANS 319
Query: 128 -------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 180
GF+V+ETN+R+YAY+ + L +L LF ++Y+ PNL+VG +T+ES+ A
Sbjct: 320 TGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRESVRRALG 379
Query: 181 NGITAEQI 188
NGI+AEQI
Sbjct: 380 NGISAEQI 387
>gi|207340606|gb|EDZ68904.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 97/171 (56%), Gaps = 18/171 (10%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
+G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+Q
Sbjct: 49 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQ 108
Query: 188 IISFLQQNAHPRV------------------ADRIPSVPENVCDQIRLWESDLNRVEMTP 229
II++L+ +AHP++ + + +P V DQIRLW+ +L+RV
Sbjct: 109 IIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYE 168
Query: 230 AHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
Y +F + + YA+D LLW+D KK + ++ E + + +F +
Sbjct: 169 GSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 219
>gi|134118870|ref|XP_771938.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254542|gb|EAL17291.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 481
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 117/219 (53%), Gaps = 7/219 (3%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTD 122
C + + Y+ + + + D A G + + F PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASNSFPGAQEALDDLAQYGFI-YKSSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 183 ITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
I+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMYEFF-SKEL 432
Query: 242 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
F+ + A+ + L + + L + + EF++
Sbjct: 433 FDDTVNEAKANAALQHAATSQKLLFIEPHTKPAITEFVK 471
>gi|85691005|ref|XP_965902.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi GB-M1]
gi|19068469|emb|CAD24937.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329766|gb|AGE96035.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi]
Length = 414
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 110/204 (53%), Gaps = 17/204 (8%)
Query: 79 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-MSLTDSSAR-KEGFVVVETN 136
+ ++ R + K LG+++L + LA S + L ++S R + F++VETN
Sbjct: 223 VDQMDRRLFKYLEALGILRLYE---------KGLAIGRSFVQLFEASERNRREFIIVETN 273
Query: 137 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNA 196
++YAY+ S+ ++ LF + LPNLI G IT+ES+ AF+ GIT +QII FL+ +
Sbjct: 274 NKIYAYTNSEYEKSVIHLFCNVTVNLPNLIKGIITEESVNVAFDKGITGKQIIHFLEASV 333
Query: 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
R S+P + +QI +WES NR+ M P + Y F + ++ ++ + L+
Sbjct: 334 ------RQGSLPPAIRNQIVIWESKRNRIFMVPGYLYSNFLNLSDYQKVLEFCIRGNHLV 387
Query: 257 WEDSKKMRLVVNAEIHMHMREFLR 280
D K +VV E H ++EF++
Sbjct: 388 ESDVDKRMIVVKLEGHSLVKEFVK 411
>gi|66358470|ref|XP_626413.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
gi|46227864|gb|EAK88784.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
Length = 709
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 103 KESWFIPTKLATNLSMS----LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKI 158
+E W T +N+ ++ L+ +S R E ++V++NFR+Y Y+ S L +ILR ++
Sbjct: 496 EELWHKSTTETSNVKINEPNCLSMNSTRLEAGIIVQSNFRIYCYTASPLQAKILRHLCQV 555
Query: 159 EYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRI-----PSVPENVCD 213
+ + PN+I G +T++ L +A+ G++AEQI+ F NAHP + R +P NV
Sbjct: 556 KVRGPNIICGILTRKGLLSAYSMGVSAEQILRFFSSNAHPIILRRFMLEGTSIIPVNVET 615
Query: 214 QIRLWESDLNRVEMTPAHYYEEFPSR----DVFEAACDYARDRSGLLW------------ 257
Q++LWE D NR++++ A + ++ + +F YAR + LL+
Sbjct: 616 QLKLWEKDKNRLKISHASTFSDWGASPNDIQLFRQTILYARSKDILLYNSPIELTEKELN 675
Query: 258 ---EDSKKMRLVVNAEIHMHMREFLRGQ 282
E KK+ LV+ E ++ F+R +
Sbjct: 676 LNVELQKKIILVIKQEYEDDIKTFIRTK 703
>gi|58262306|ref|XP_568563.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230737|gb|AAW47046.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 481
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 116/219 (52%), Gaps = 7/219 (3%)
Query: 67 CQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL----SMSLTD 122
C + + Y+ + + + D A G + + F PT LAT+L + ++
Sbjct: 255 CMQLGQDYSASNSFPGAQEALDDLAQYGFI-YKSSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
SA + F+++ETN+++YAY++++L IL LF I + PNL+VG + ++ + A E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 183 ITAEQIISFLQQNAHPRVADRIPS-VPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
I+A QII++L +AHP++ + P + + DQ+ LW+ + NR++ YE F S+++
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMYEFF-SKEL 432
Query: 242 FEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
F+ + A+ + L + L + + EF++
Sbjct: 433 FDDTVNEAKANAALQHAAISQKLLFIEPHTKPAITEFVK 471
>gi|398406290|ref|XP_003854611.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
gi|339474494|gb|EGP89587.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
Length = 493
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/215 (32%), Positives = 113/215 (52%), Gaps = 27/215 (12%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ S L +L L GI Y+ + L+ Q+ M+ D D GL+ +++ PT+LAT
Sbjct: 238 VLSFLFTLGSLELGI--PYSTSNLTLTQQHMLDDLQDFGLIYRSSPTATAYY-PTRLATT 294
Query: 116 LSMSLTDSSA----------------RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
L+ +D+ A ++G++++ETN+R+YAY++S L IL LFS +
Sbjct: 295 LT---SDAPALPNNTSSTTTTAATESNEKGYIILETNYRLYAYTSSPLQISILSLFSTLH 351
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR-----IPSVPENVCDQ 214
+ PNLI ITK S+ +A IT++QII++L +AHP + + P +P V DQ
Sbjct: 352 TRYPNLITAKITKSSIASAISQSITSDQIITYLSTHAHPVLRRQAAIMSAPILPPTVVDQ 411
Query: 215 IRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA 249
IRLW+ + R+ Y + + + A +YA
Sbjct: 412 IRLWQIEGERMTTWKGFYIRDVGGWEEYVKAVEYA 446
>gi|429965574|gb|ELA47571.1| hypothetical protein VCUG_00894 [Vavraia culicis 'floridensis']
Length = 424
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
L S++ ++ F+VVETN+++YAY+TS I++LF +I +LPNL+V IT+ES+ AF
Sbjct: 267 LFSSASTQDSFLVVETNYKLYAYTTSSHELSIIKLFCQIIRELPNLVVAHITEESVNAAF 326
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR 239
GIT +QI+ +L + + +P V +QI +WE +R++ A Y F +
Sbjct: 327 VKGITGQQIVDYLNEKSRSE-------LPVVVLEQILIWERKRDRMKCMDAVIYSHFMTY 379
Query: 240 DVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+E Y +++ L+ D + LVV E H ++ F++ K
Sbjct: 380 GEYEITYKYCKEKGALVDYDEFRRLLVVKLEYHNDVKNFIKSNIK 424
>gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial
[Nannochloropsis gaditana CCMP526]
Length = 213
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 39/216 (18%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR------- 126
Y + LS Q+++++ F GL+ Q R F PT +A NL T R
Sbjct: 4 YPVRALSPTQQALLEKFISFGLI-YQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRGHGH 62
Query: 127 --KEG---------------FVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 169
EG V+VETN+++ AY++S LH E+LR+F+ + +LPN+++G
Sbjct: 63 VGPEGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVVIGF 122
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPRV-ADRIPSVPENVCDQIRLWESDLNRVEMT 228
IT+ S+ A +GITA I+SFL+ + H V A + +PENV QI LW + +RV+
Sbjct: 123 ITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRVK-- 180
Query: 229 PAHYYEEFPSRDV-------FEAACDYARDRSGLLW 257
+EE D+ FE YA + + + W
Sbjct: 181 ----FEEVMMIDLSSLMVEEFEEVRTYAENLAVVCW 212
>gi|359497414|ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Vitis vinifera]
Length = 209
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 51/57 (89%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ 57
MPS IT RLP+L+DLEAYA+GQWECFLLQLISS Q E+ TNFSSSMMKVFQRGLL Q
Sbjct: 94 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSMMKVFQRGLLTQ 150
>gi|296084771|emb|CBI25914.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/57 (82%), Positives = 51/57 (89%)
Query: 1 MPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQ 57
MPS IT RLP+L+DLEAYA+GQWECFLLQLISS Q E+ TNFSSSMMKVFQRGLL Q
Sbjct: 94 MPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFSSSMMKVFQRGLLTQ 150
>gi|323455511|gb|EGB11379.1| hypothetical protein AURANDRAFT_52511 [Aureococcus anophagefferens]
Length = 291
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 103/186 (55%), Gaps = 18/186 (9%)
Query: 56 IQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATN 115
+ +++ +L + G E Y ++ LSE Q++ + LGLV ++ S F PT L +
Sbjct: 46 VVALVLTLAYATPG--EGYAIHELSEAQKAALDVLFALGLV-YRRNASSSRFYPTTLGVD 102
Query: 116 LSMSLTDSS--ARKEGF------VVVETNFRMYAYS-----TSKLHCEILRLFSKIEYQL 162
++ S+ AR G V+V+TNF++ AY+ TS L L LF+++ +L
Sbjct: 103 VAFGARRSAGGARAGGDFRRPVDVIVQTNFQVLAYTDAGVNTSTLVLATLNLFAELTTRL 162
Query: 163 PNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222
PNL+VG I+++++ + GI QI+ FL+ +AHP A + VP+NV DQ+ LW +
Sbjct: 163 PNLVVGTISRDAIKRCVDRGIRVPQIVKFLRAHAHP--AMKASGVPQNVTDQMALWAGEG 220
Query: 223 NRVEMT 228
NRV T
Sbjct: 221 NRVAFT 226
>gi|365758016|gb|EHM99881.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 419
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 47/175 (26%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 235 KAYKIDALSETQRIMLQDMRDYGLV-FQKHLNDSIFYPTKLALMLTSDTKTIISASNAMD 293
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD++A + G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSVNEDGANGKSTTDTTASDDLNKAGSKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV 200
L +L LF ++ + N+++G IT+ES+ NA NGITA+QII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRNALTNGITADQIIAYLETHAHPQM 408
>gi|164660182|ref|XP_001731214.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
gi|159105114|gb|EDP44000.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
Length = 231
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 91/148 (61%), Gaps = 9/148 (6%)
Query: 65 FLCQGILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT 121
F G LE AY S+ Q +++ +D GLV + + +F PT+LA+ L+ + +
Sbjct: 77 FFTVGGLELGRAYESRGFSQTQLQTLEELSDYGLV-YRPSKSAKYFFPTRLASTLTSTAS 135
Query: 122 DSSAR-----KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 176
+R ++G++++ETN+R+YAY+ + L IL LF ++ +LPNL++G +T+ S+
Sbjct: 136 PLLSRLNDQEEQGYLILETNYRVYAYTANLLRIAILNLFVTLKSRLPNLVIGQLTRHSVK 195
Query: 177 NAFENGITAEQIISFLQQNAHPRVADRI 204
+A GITA+QII++L +AHP++ +
Sbjct: 196 SALNKGITADQIITYLTHHAHPQMYKNV 223
>gi|449017614|dbj|BAM81016.1| similar to TFIIH subunit TFB2 [Cyanidioschyzon merolae strain 10D]
Length = 693
Score = 97.8 bits (242), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 89/158 (56%), Gaps = 9/158 (5%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
++VETNFR+YAY+ S +L LF++I Y++P + +G IT++S+ A + GITA+Q++
Sbjct: 538 IIVETNFRLYAYAASSFQVALLSLFTRILYRMPGVAIGVITRDSVRRALKCGITAKQLLH 597
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF-PSRD---VFEAAC 246
FL ++ SVP NV DQI LWE + R++ P E F P+ D F+
Sbjct: 598 FLGIHSM-----EGKSVPFNVHDQILLWELERKRIQAYPGVLLEGFEPTSDGRAFFDQLQ 652
Query: 247 DYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
+Y + W D + LV +A +RE++R Q +
Sbjct: 653 EYTVELGAQQWCDRVRQLLVADASSFERLREWIRRQAQ 690
>gi|221482097|gb|EEE20458.1| tfiih, polypeptide, putative [Toxoplasma gondii GT1]
Length = 861
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 672 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 731
Query: 188 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 230
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 732 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 779
>gi|221502519|gb|EEE28246.1| tfiih, polypeptide, putative [Toxoplasma gondii VEG]
Length = 836
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 188 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 230
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|237842971|ref|XP_002370783.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
gi|211968447|gb|EEB03643.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
Length = 836
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 647 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 706
Query: 188 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 230
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 707 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|401410644|ref|XP_003884770.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
gi|325119188|emb|CBZ54742.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
Length = 868
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 74/108 (68%), Gaps = 5/108 (4%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A+++GITA+Q
Sbjct: 679 EAGMLVQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQ 738
Query: 188 IISFLQQNAHPRVADR-----IPSVPENVCDQIRLWESDLNRVEMTPA 230
II FL+ +AHP V +R P +PENV Q+R+WE++ R+ + PA
Sbjct: 739 IIRFLEAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 786
>gi|402465832|gb|EJW01474.1| hypothetical protein EDEG_03937 [Edhazardia aedis USNM 41457]
Length = 465
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E F+ +ETNF++YAY+TSK IL LFSKI +LPNLI I ++S+ AF+ I+A+Q
Sbjct: 316 ESFMYIETNFKLYAYTTSKYDFSILSLFSKISCKLPNLISAIINEDSVNTAFDKKISAKQ 375
Query: 188 IISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
I +L+ +VP+NV +Q+ +WES NR++ + ++ F + F+ A D
Sbjct: 376 ISYYLKSKG--------KNVPKNVVEQVYIWESKRNRIKTSECTLFKGFLNLMDFKKAVD 427
Query: 248 YARDRSGL--LWEDSKKMRLVVNAEIHMHMREFLRG 281
+++ L ++ED K + VN +E+++
Sbjct: 428 VCKEKHWLVDVYED--KRFIFVNNLYAEEFKEYIKN 461
>gi|412992644|emb|CCO18624.1| predicted protein [Bathycoccus prasinos]
Length = 464
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 7/123 (5%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLV--KLQQGRKESWFIPTKLATNLSMSLTDSSA-----R 126
Y+ LSE +R + + LG++ +W++PT L+ LS T SSA R
Sbjct: 339 YSKANLSEAERRVASHLSALGVLYENEDDENDNNWYVPTVLSAGLSSVSTTSSAKSALAR 398
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
+G ++VETNFR+YAY+ S+L E+LRLF++ +Y+LPN VG IT++S+ +A GI+ +
Sbjct: 399 IDGHIIVETNFRVYAYTHSELETEVLRLFTRPDYKLPNAYVGMITRDSILDAMRAGISPD 458
Query: 187 QII 189
QI+
Sbjct: 459 QIV 461
>gi|432098035|gb|ELK27922.1| General transcription factor IIH subunit 4 [Myotis davidii]
Length = 377
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 130/283 (45%), Gaps = 58/283 (20%)
Query: 15 LEAYAIGQWECFLLQLISSAQA-----ERPTNFSSSMMKVFQ----RGL---LIQSILRS 62
L+ YA +WE L + S A + P M++ Q RG+ I S L
Sbjct: 136 LDKYAEERWEVVLHFMAGSPSAAFLLLDTPAQLWYFMLQHLQTAQSRGMDLVEILSFLFQ 195
Query: 63 LKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSL 120
L F G + Y++ +S+ +R + GLV Q+ RK + PT+LA +LS +S
Sbjct: 196 LSFSSLG--KDYSVEGMSDSRR-------EFGLV-FQRKRKSRRYYPTRLAISLSSGVSG 245
Query: 121 TDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFE 180
+A + GF+VVETN+++YAY+ S+L ++ LFS++ Y+ PN++V
Sbjct: 246 AGGTAHQPGFIVVETNYQLYAYTESELQIALIALFSEMLYRFPNMVVA------------ 293
Query: 181 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 240
+ P +P + DQIRLWE + +R+ T Y +F S+
Sbjct: 294 ----------------------QTPVLPPTITDQIRLWELERDRLLFTEGVLYNQFLSQV 331
Query: 241 VFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
F+ A + L++E+ K +VV H ++ F + Q
Sbjct: 332 DFDLLLARAWELGALVFENMAKQLMVVTPAGHREVKRFWKQQK 374
>gi|71033737|ref|XP_766510.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353467|gb|EAN34227.1| hypothetical protein, conserved [Theileria parva]
Length = 359
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 113/203 (55%), Gaps = 22/203 (10%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATNLSMSLTDS---- 123
+ ++ L++ Q +++ +LG+V + +K + +I K TN + +
Sbjct: 96 DCFSTEGLTKTQLRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNTNTGLPTSKDLDLS 155
Query: 124 -SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
A + ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF++G
Sbjct: 156 IKAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSG 215
Query: 183 ITAEQIISFLQQNA-HPRVADR---------IPSVPENVCDQIRLWESDLNRVEMTPAHY 232
IT+++II FL N + + ++ S+PENVC Q+++WES+ +R+E+ P+
Sbjct: 216 ITSKEIIRFLSPNGMNSSIGNQENTLLNSTFTYSIPENVCRQLKMWESERDRIELCPSIV 275
Query: 233 YEEFPSR---DVFEAACDYARDR 252
++ + D+F+ +A+ +
Sbjct: 276 FKRWDQDFMPDLFQRTVRWAQSK 298
>gi|84998132|ref|XP_953787.1| TFIIH subunit, Tf2b [Theileria annulata]
gi|65304784|emb|CAI73109.1| TFIIH subunit, Tf2b homologue, putative [Theileria annulata]
Length = 645
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 114/206 (55%), Gaps = 28/206 (13%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATN--------LSMS 119
+ ++ L++ Q +++ +LG+V + +K + +I K TN L +S
Sbjct: 383 DCFSTEGLTKTQIRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNTNSVLPNSKDLDIS 442
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
+ A + ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF
Sbjct: 443 I---KAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAF 499
Query: 180 ENGITAEQIISFLQQNA-HPRVADR---------IPSVPENVCDQIRLWESDLNRVEMTP 229
++GIT+++II FL N + + + S+PENVC Q+++WES+ +R+E+ P
Sbjct: 500 KSGITSKEIIRFLSPNGMNSSIGSQENTLLNSSFTYSIPENVCRQLKMWESERDRIELCP 559
Query: 230 AHYYEEFPSR---DVFEAACDYARDR 252
+ ++ + D+F+ +A+ +
Sbjct: 560 SIVFKRWDQDFMPDLFQRTVRWAQSK 585
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 54/85 (63%)
Query: 182 GITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDV 241
GI A++++S+L HP +A R P VPE V DQIRLWE+ +NR+ YE SR++
Sbjct: 1 GIAADELVSYLAARPHPSIASRTPVVPEVVSDQIRLWEASMNRLRADSVVLYENLASREL 60
Query: 242 FEAACDYARDRSGLLWEDSKKMRLV 266
FE A ++R LLWEDS +MR V
Sbjct: 61 FERALAFSRSSGTLLWEDSGQMRFV 85
>gi|428673252|gb|EKX74165.1| conserved hypothetical protein [Babesia equi]
Length = 668
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 77/124 (62%), Gaps = 7/124 (5%)
Query: 107 FIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 166
+P+ ++ S++ +S ++V++NF++Y Y+ + L +IL + +++ + PN++
Sbjct: 470 LVPSNSPLSVHTSISFTSEYLPSKIIVQSNFKVYVYTVNNLQFDILNILCEVQARTPNMV 529
Query: 167 VGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVE 226
VG +T+ES AF++GIT+ +II F + + PENV Q+R+WE++ NRVE
Sbjct: 530 VGVLTRESAQRAFKSGITSHEIIRFFS-------STNTSTFPENVIRQLRMWEAERNRVE 582
Query: 227 MTPA 230
++PA
Sbjct: 583 LSPA 586
>gi|403221352|dbj|BAM39485.1| transcription factor IIH subunit [Theileria orientalis strain
Shintoku]
Length = 634
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 101/178 (56%), Gaps = 21/178 (11%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRK----ESWFIPTKLATNLSMSL-----TD 122
+ ++ L++ Q +++ +LG+V + + + +I K +N+++ L +
Sbjct: 355 DCFSTENLTKTQMRLVRLLNELGIVYYKNANRFYIYDLSYIIGK--SNINVDLFKEFDVN 412
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
+A E ++V++NF++Y Y+ S L +L +++ + PNL+VG +T+ES+ +AF++G
Sbjct: 413 KTAGNESRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLTRESVQSAFKSG 472
Query: 183 ITAEQIISFLQ--------QNAHPRVADRIPS--VPENVCDQIRLWESDLNRVEMTPA 230
IT+ +II FL D + +PENVC Q+++WES+ +R+E++PA
Sbjct: 473 ITSNEIIRFLSPMKLSLSYAGTCNSFMDSFANYKIPENVCRQLKMWESERDRIELSPA 530
>gi|387595518|gb|EIJ93142.1| hypothetical protein NEPG_02098 [Nematocida parisii ERTm1]
Length = 398
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 149
F LGL+ ++G K + S+ L D E F+V+E+NFR+Y YS L
Sbjct: 219 FESLGLIFFEKG-------LVKFSPTFSL-LFDDEEGAEKFLVLESNFRLYIYSNRPLDT 270
Query: 150 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPE 209
I+ LFS + PN+IV I ++S+ A +GITA QI +L QN+ + + E
Sbjct: 271 FIISLFSIKSREFPNMIVAMINEDSIRQALMHGITAGQIRVYLNQNS-------MYEINE 323
Query: 210 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 269
NV +QIRLWE +NR+ ++ + F + F Y + + +K LVV
Sbjct: 324 NVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCENNNIDHRSYREKRMLVVGI 383
Query: 270 EIHMHMREFLR 280
E + ++ F+R
Sbjct: 384 ENYESVKSFIR 394
>gi|378754852|gb|EHY64880.1| hypothetical protein NERG_01936 [Nematocida sp. 1 ERTm2]
Length = 396
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 96/195 (49%), Gaps = 15/195 (7%)
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTS 145
M+ F LGL+ ++G + ++ S+ L D E F+ +E+NFR+Y YS
Sbjct: 213 MLDLFESLGLITFERG-------LVRFSSTFSL-LFDDEEGGEKFLTLESNFRLYIYSNR 264
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIP 205
L I+ LFS + PN+IV I ++S+ A GITA QI +L QN+ +
Sbjct: 265 PLDVFIISLFSIKIREFPNMIVAMINEDSIRQALTYGITAGQIRVYLNQNS-------MH 317
Query: 206 SVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRL 265
+ ENV +QIRLWE +NR+ ++ + F + F Y + + K L
Sbjct: 318 KINENVLEQIRLWEKRMNRIHAWESYIFSNFLNYKDFLLVESYCENNNVEHRSYRDKRVL 377
Query: 266 VVNAEIHMHMREFLR 280
VV E + +++ F+R
Sbjct: 378 VVGVENYDNVKSFIR 392
>gi|209880858|ref|XP_002141868.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557474|gb|EEA07519.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 794
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 80/141 (56%), Gaps = 9/141 (6%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NFR+Y Y+ S L +ILR +++ + PN+I G +T+ L +A+ G+ A Q
Sbjct: 603 EAGIIVQSNFRVYCYTASPLQAKILRHLCQVKVRGPNIICGVLTRRGLLSAYSMGVKAYQ 662
Query: 188 IISFLQQNAHP-----RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR--- 239
I+ F NAHP + D +P +V Q++LWE+D NR+E+ + ++ +
Sbjct: 663 ILRFFISNAHPIILKKHITDGTSIIPISVETQLKLWENDHNRLEINKVSLFSDWGNNKED 722
Query: 240 -DVFEAACDYARDRSGLLWED 259
++F+ YA + +L+ +
Sbjct: 723 IELFKQTVTYAIGKQVVLYHN 743
>gi|399949686|gb|AFP65344.1| tfIIB-like protein [Chroomonas mesostigmatica CCMP1168]
Length = 464
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++E+NFR+Y Y + L ++L +FS+I YQLPNL VG IT++S+ AF +G T+ II
Sbjct: 329 IIIESNFRIYVYKNAHLGNDLLLVFSEILYQLPNLFVGEITEKSILKAFNSGSTSRNIIG 388
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 230
FL+ N HP P +P V +QI+ WE +++T +
Sbjct: 389 FLKNNLHPIC----PWIPSAVTNQIKAWEFQKTEIKITES 424
>gi|60603004|gb|AAX27959.1| unknown [Schistosoma japonicum]
Length = 100
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%)
Query: 123 SSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 182
SS+ G++++ETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A G
Sbjct: 8 SSSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRG 67
Query: 183 ITAEQIISFLQQNAHP 198
ITA QI+SFL NAHP
Sbjct: 68 ITANQILSFLTSNAHP 83
>gi|387592902|gb|EIJ87926.1| hypothetical protein NEQG_01998 [Nematocida parisii ERTm3]
Length = 398
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 15/191 (7%)
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHC 149
F LGL+ ++G K + S+ L D E F+V+E+NFR+Y YS L
Sbjct: 219 FESLGLIFFEKG-------LVKFSPTFSL-LFDDEEGAEKFLVLESNFRLYIYSNRPLDT 270
Query: 150 EILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPE 209
I+ LFS + PN++V I ++S+ A +GITA QI +L QN+ + + E
Sbjct: 271 FIISLFSIKSREFPNMMVAMINEDSIRQALMHGITAGQIRVYLNQNS-------MYEINE 323
Query: 210 NVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNA 269
NV +QIRLWE +NR+ ++ + F + F Y + + +K LVV
Sbjct: 324 NVIEQIRLWEKRMNRIHSWESYIFSNFLNYKDFLLVESYCENNNIDHRSYREKRMLVVGI 383
Query: 270 EIHMHMREFLR 280
E + ++ F+R
Sbjct: 384 ENYESVKSFIR 394
>gi|389586531|dbj|GAB69260.1| hypothetical protein PCYB_146880 [Plasmodium cynomolgi strain B]
Length = 913
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 70/106 (66%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 733 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 792
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 793 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 838
>gi|221061889|ref|XP_002262514.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193811664|emb|CAQ42392.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 943
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 70/106 (66%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 763 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 822
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ AHP ++ S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 823 FLESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 868
>gi|403348380|gb|EJY73625.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Oxytricha trifallax]
Length = 532
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 79/130 (60%), Gaps = 20/130 (15%)
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS-----------------SARK 127
S+++DF D+GLV +++ +K F+ T L + S T S +
Sbjct: 264 SILRDFDDMGLVGMERRQK---FVITSLLQSFLQSQTGQLQKSSDSSSSNVIDAQRSQSQ 320
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
+ F++VETNF++YAY++S L+ +LR F ++E PNL+VG +T++SL AF+ GI++ Q
Sbjct: 321 DKFLIVETNFKVYAYTSSDLYRALLRQFIRVECIFPNLVVGTLTRKSLQKAFQRGISSGQ 380
Query: 188 IISFLQQNAH 197
I+SFL+ + H
Sbjct: 381 ILSFLESHIH 390
>gi|428181353|gb|EKX50217.1| TFB2 transcription factor B2 nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 463
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL-SMSLTDSSARKEGFV 131
Y L+ LS + +I DLG V + ++ +F PT L NL + S S + V
Sbjct: 254 GYRLDLLSRSNQELITSLHDLGAVYFKPNDRQ-YFFPTPLIVNLCTESEVPSGPSTDAGV 312
Query: 132 VVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISF 191
E +++ ILRLF++ Y+ P++I+ IT+ES+ NA II +
Sbjct: 313 ADEF--------SAEPAAGILRLFTRPIYKFPHMIIAVITRESIRNAL--------IIEY 356
Query: 192 LQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYAR- 250
L+ +AHP+ + P VPE V DQI WE + R+ PA Y F S + A AR
Sbjct: 357 LRMHAHPQCLENWPIVPEVVTDQICFWEQERCRIRAEPAVAYHNFFSGEAHRACEKEARR 416
Query: 251 ------------DRSGLLWEDSKKMRLVVNAEIHMHMREFL 279
R L+ D+ + LVV +R+F+
Sbjct: 417 LKFNDKGPGEVAKREACLYSDTSEQLLVVPEAADPLIRKFI 457
>gi|124806778|ref|XP_001350829.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
gi|23496958|gb|AAN36509.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
Length = 945
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 90/152 (59%), Gaps = 9/152 (5%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
++V++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 766 LIVQSNFKVYLYTSSLLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 825
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSR---DVFEAACD 247
FL+ +HP + S+P NV Q++LWES+ +R+ + A ++ F +++
Sbjct: 826 FLESYSHPGKNNFKSSIPMNVITQLKLWESERHRLTLEDAIVFKSFEKDFMPHLYQQIVI 885
Query: 248 YARDRSGLLW------EDSKKMRLVVNAEIHM 273
+A ++ LL+ ++K+ L + AE ++
Sbjct: 886 WANSKNYLLYYTPWPKNNTKEFDLWIKAEKYL 917
>gi|156086630|ref|XP_001610724.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797977|gb|EDO07156.1| conserved hypothetical protein [Babesia bovis]
Length = 586
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 76/118 (64%), Gaps = 6/118 (5%)
Query: 116 LSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 175
+SMS+ + K +VV++NF++YAY S L +L +++ + PNL++G +T+ SL
Sbjct: 384 ISMSVCGNKGSK---MVVQSNFKIYAYIPSALQMNVLNHICELQAKTPNLVIGVLTRSSL 440
Query: 176 YNAFENGITAEQIISFLQ---QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA 230
AF++GITA+Q+I F + Q ++ + +VPENV Q+++WE++ NR+E+ A
Sbjct: 441 QTAFKSGITADQLICFFESKGQYDDIQINRNVMNVPENVRRQLKMWEAERNRLELLNA 498
>gi|156095867|ref|XP_001613968.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802842|gb|EDL44241.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 960
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 69/106 (65%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
++V++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA+ + ITA QII
Sbjct: 780 LIVQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIK 839
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ AHP + S+P NV Q++LWES+ +R+ + A ++ F
Sbjct: 840 FLESYAHPGRSTFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 885
>gi|429854513|gb|ELA29524.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 509
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Query: 127 KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAE 186
+ G ++VETN+R+YAY + L +L LF K++ + +++ G +T+ S+ NA E GITA+
Sbjct: 369 RSGSIIVETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITAD 428
Query: 187 QIISFLQQNAHPRV-----ADRIPSVPENVCDQIRLWESDL 222
QIIS+L +AH ++ P +P V DQIRL D+
Sbjct: 429 QIISYLASHAHEQMHRFAAVRNKPVLPPTVIDQIRLEYEDI 469
>gi|397564488|gb|EJK44232.1| hypothetical protein THAOC_37249 [Thalassiosira oceanica]
Length = 971
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/224 (31%), Positives = 112/224 (50%), Gaps = 24/224 (10%)
Query: 62 SLKFL-CQG---ILEAYNLNTL-SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 116
+L FL C G I E Y + L S+ R ++KDFA GL+ + + ++ F PT++A NL
Sbjct: 329 ALSFLICLGSCRIGEGYFSSVLGSKSARVLMKDFARFGLLFVCRVAGKTAFYPTRVAVNL 388
Query: 117 SMSLTDSSARKEGFVVVETNFR------MYAYSTSKLHCEILRLFSKIEYQ-LPNLIVGA 169
S +R+ ++ M A ++ H + I Y+ LPN++
Sbjct: 389 VASNEKGGSRQSDALLPSVAATRSLEEAMNAPDPTRSHLAV------ISYKRLPNVVFFH 442
Query: 170 ITKESLYNAFENGITAEQIISFLQQNAHPRV-ADRIPSVPENVCDQIRLWESDLNRVEMT 228
+T++S+ +AF G+TA+QI+ FLQ +AHP + + P P NV DQI LW+ + RV M
Sbjct: 443 LTRDSIKSAFRLGVTADQILRFLQVHAHPMMRSGNQPMPPANVRDQILLWDRERRRVVMD 502
Query: 229 PAHYYEEFPSRD--VFEAACDYARDRSGLLWEDSKKMRLVVNAE 270
++ RD F A YA D L W ++ +L + +
Sbjct: 503 EVWVHQ---CRDDAEFSAVGMYASDSEALAWGNAHTNKLYLQCD 543
>gi|399219100|emb|CCF75987.1| unnamed protein product [Babesia microti strain RI]
Length = 612
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 65/104 (62%), Gaps = 4/104 (3%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
E ++V++NF++Y Y+ S L +L +++ + PNL++G +T+ S + AF GITA+Q
Sbjct: 429 ESGIIVQSNFKVYVYTASPLQINVLAHLCELQSRTPNLVIGVLTRASAHAAFRAGITAKQ 488
Query: 188 IISFLQQNAHP----RVADRIPSVPENVCDQIRLWESDLNRVEM 227
I FL+ ++HP V + +P NV Q+ +WE++ NR+ +
Sbjct: 489 ICQFLETHSHPILLQNVREGGSYLPNNVVTQLNMWEAERNRISL 532
>gi|82704497|ref|XP_726580.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482045|gb|EAA18145.1| Drosophila melanogaster LD30622p-related [Plasmodium yoelii yoelii]
Length = 926
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 746 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 805
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 806 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 851
>gi|70950974|ref|XP_744765.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524852|emb|CAH80923.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 922
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 742 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 801
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 802 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 847
>gi|68070707|ref|XP_677265.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497310|emb|CAH94094.1| conserved hypothetical protein [Plasmodium berghei]
Length = 929
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 69/106 (65%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA+ + ITA+QII
Sbjct: 749 LIIQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIK 808
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEF 236
FL+ +HP +P NV Q++LWE++ +R+ + + ++ F
Sbjct: 809 FLESYSHPGKTKLKSIIPINVITQLKLWEAERHRLILEDSIVFKNF 854
>gi|123488965|ref|XP_001325283.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908180|gb|EAY13060.1| hypothetical protein TVAG_212420 [Trichomonas vaginalis G3]
Length = 460
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 12/205 (5%)
Query: 62 SLKFLCQ-GILE---AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS 117
SL+FL + G +E Y + +L+ Q+ ++ F +GLV + +F PTK N
Sbjct: 229 SLRFLLKIGSMELSKGYPITSLTPTQKELLSPFKTIGLVYIDG----DYFYPTKSILNFF 284
Query: 118 MSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
+ + EG+++++TNF++ A+ S LH +L+ F+ + Y+ P I+ S
Sbjct: 285 GK--SNIFQTEGWMLIDTNFKITAFPKSPLHTALLKKFANVTYEFPGFASAFISPNSFRE 342
Query: 178 AFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237
A G T + II FL+ N ++ +P V Q +W R+ +T ++
Sbjct: 343 ALNQGTTLDDIIGFLKSNLSHKIGSG--QIPSAVMKQFYVWRDQRERLTVTHECIMRQYT 400
Query: 238 SRDVFEAACDYARDRSGLLWEDSKK 262
+ + A A+ +G ++ ++K
Sbjct: 401 NPNDANLAAQCAKQLAGYVYGPAEK 425
>gi|440295536|gb|ELP88449.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba invadens IP1]
Length = 531
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 20/161 (12%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+ ETN+ +Y Y+ S ++ LF + QL NL VG IT +++ AF GIT E +++
Sbjct: 290 TITETNYTVYIYTESFFQVKLYSLFIRQNLQLTNLCVGRITYDTVTEAFLKGITNEMLVN 349
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPA---HYYEEFP----SRDVFE 243
FLQ P++P+N+ QI LW+ +LNR++ A +YE P ++++
Sbjct: 350 FLQ-----------PNLPKNIQAQIDLWKRELNRLKEVRAVKFRFYE--PELEVQKELYH 396
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
A G+++ +++ L V ++ ++EFLR + +
Sbjct: 397 LTKSEAEKMKGVVFYKEEELTLFVRYDVAEKIKEFLRRKTR 437
>gi|160331881|ref|XP_001712647.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
gi|159766096|gb|ABW98322.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
Length = 432
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 60/97 (61%), Gaps = 4/97 (4%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
+++E+N+R+Y Y + + ++ +FS+I Y LPN VG IT+ S+ A ++GIT + I+
Sbjct: 300 IIIESNYRIYVYQKNSNNNQLFLIFSEILYILPNFFVGEITETSISRALKSGITIQNILG 359
Query: 191 FLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEM 227
F+++N H S+P + +Q RLWE ++++
Sbjct: 360 FIRENLHCVCR----SIPSTILNQFRLWEFQKKKIKI 392
>gi|380476902|emb|CCF44454.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 126
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------VADRIPSVPENVCDQIRLW 218
++ G +T+ S+ NA E GITA+QIIS+L +AH + V R P +P V DQIRLW
Sbjct: 1 MVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRSR-PVLPPTVVDQIRLW 59
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREF 278
+ + R+ T + +F S +E YA + L+W + K A H +R++
Sbjct: 60 QLETERMTTTSGFLFRDFDSPKEYEVIAGYASEIGVLVWRNDKLGMFF--ASKHEQIRDY 117
Query: 279 LRGQNK 284
L+ + K
Sbjct: 118 LKLRKK 123
>gi|67483069|ref|XP_656826.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56474050|gb|EAL51440.1| hypothetical protein EHI_192400 [Entamoeba histolytica HM-1:IMSS]
gi|449706224|gb|EMD46115.1| tfiih basal transcription factor complex p52 subunit, putative
[Entamoeba histolytica KU27]
Length = 484
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 97/205 (47%), Gaps = 29/205 (14%)
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR------KEGFVVVETNFRMYAYS 143
F DLG++ + + P MSL S+A K+ + E N+ +Y Y+
Sbjct: 249 FNDLGIIVYYKEQNVMAITPL-------MSLLRSNANIPSDLVKKPKTITEINYSVYIYT 301
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+ ++ RLF + +QL NL VG + +S+ AF GIT+E +I+FLQ
Sbjct: 302 ESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEMLINFLQ---------- 351
Query: 204 IPSVPENVCDQIRLWESDLNRVE---MTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 260
P++P + QI LW+ ++NR + + +Y++ R +F DR +
Sbjct: 352 -PNLPRTIQKQIDLWKKEINRFKEEHVVRYRFYDDAIGRQLF-VIVKNESDRLKATILEK 409
Query: 261 KKMRLV-VNAEIHMHMREFLRGQNK 284
+ +RL+ V + +R F++ + +
Sbjct: 410 EDIRLIFVKYQYGETIRSFMKKKER 434
>gi|167395228|ref|XP_001741280.1| TFIIH basal transcription factor complex p52 subunit [Entamoeba
dispar SAW760]
gi|165894177|gb|EDR22239.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba dispar SAW760]
Length = 489
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 27/162 (16%)
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSAR------KEGFVVVETNFRMYAYS 143
F DLG++ + + P MSL S+A K+ + E N+ +Y Y+
Sbjct: 249 FNDLGIIVYYKEQNVMAITPL-------MSLLRSNANIPSDLVKKPKTITEINYSVYIYT 301
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+ ++ RLF + +QL NL VG + +S+ AF GIT+E +I+FLQ
Sbjct: 302 ESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEMLINFLQ---------- 351
Query: 204 IPSVPENVCDQIRLWESDLNRVE---MTPAHYYEEFPSRDVF 242
P++P + QI LW+ ++NR + + +Y++ R +F
Sbjct: 352 -PNLPRTIQKQIDLWKKEINRFKEEHVVRYKFYDDAIGRQLF 392
>gi|238570605|ref|XP_002386883.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
gi|215440101|gb|EEB87813.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
Length = 69
Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 49/69 (71%), Gaps = 5/69 (7%)
Query: 124 SARKEGFVVVETNFRMYAYSTS-----KLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 178
S ++GF+V+ETN+R+YAY+ S L IL LF ++Y+ PNL+VG+IT+ES+ A
Sbjct: 1 SGSQQGFIVLETNYRVYAYTGSFSLHNPLQTAILHLFVSLKYRFPNLVVGSITRESVKKA 60
Query: 179 FENGITAEQ 187
NGI+A+Q
Sbjct: 61 LSNGISADQ 69
>gi|167535774|ref|XP_001749560.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771952|gb|EDQ85611.1| predicted protein [Monosiga brevicollis MX1]
Length = 417
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 80/150 (53%), Gaps = 8/150 (5%)
Query: 69 GILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE 128
+LE ++ L+ +Q + ++ +G+V + RK F T A L + + ++ E
Sbjct: 233 SVLE-FSAENLTTMQITFLRQLHYMGVV-YHRNRKSKRFFLTPYAVMLYHNAELALSQTE 290
Query: 129 -GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQ 187
GF++ ETNF +YAY+ S + +L F+ + Y+LP + IT+ S+ A GITA+Q
Sbjct: 291 TGFLLAETNFHVYAYTDSAVKVALLSKFATLTYRLPIMTTAIITRTSVRRALSQGITADQ 350
Query: 188 IISFLQQNA-----HPRVADRIPSVPENVC 212
I+ F+Q+++ H A P+ P++
Sbjct: 351 ILRFMQRSSLLLRHHDETAPTRPTSPQHAT 380
>gi|330038479|ref|XP_003239608.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
gi|327206532|gb|AEA38710.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
Length = 467
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 60/105 (57%), Gaps = 13/105 (12%)
Query: 120 LTDSSARKEGF-VVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 178
L+ KE F +++E+N+R+YAY+ + +IL F + Y LP L VG I K S++ A
Sbjct: 307 LSKKIKTKECFQMIIESNYRVYAYNNNTFLNKILIQFCDLIYNLPGLFVGEINKTSIHKA 366
Query: 179 FENGITAEQIISFLQQNAHPRVADRIPSVPENVC----DQIRLWE 219
GI A+ IISF+ +N+H + +N C +QIR+WE
Sbjct: 367 IHKGINAKNIISFILKNSH--------YIHQNSCNPIINQIRIWE 403
>gi|269861689|ref|XP_002650538.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220065990|gb|EED43520.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 291
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
L ++ + F+ +ETNF++Y+Y+ + IL LFS I +++P +I + ++ + N
Sbjct: 146 LYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTL 205
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQ----IRLWESDLNRVEMTPAHYYEE 235
+ GI +QI+ +++++ N CDQ I +W+ NR+ + Y +
Sbjct: 206 DRGIKIQQIVEYIRRHT------------INNCDQILHMIEIWDKQRNRINKQIGYLYSD 253
Query: 236 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
F + + + + + + + LL+++ ++ L V ++H+
Sbjct: 254 FTNYNEYRSVLEQIKTDTDLLYKNEEERILFVKNKLHI 291
>gi|269860316|ref|XP_002649880.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066720|gb|EED44193.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 369
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 82/158 (51%), Gaps = 16/158 (10%)
Query: 120 LTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAF 179
L ++ + F+ +ETNF++Y+Y+ + IL LFS I +++P +I + ++ + N
Sbjct: 224 LYKNNTEIQKFIYLETNFKLYSYTNNLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTL 283
Query: 180 ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQ----IRLWESDLNRVEMTPAHYYEE 235
+ GI +QI+ +++++ N CDQ I +W+ NR+ + Y +
Sbjct: 284 DRGIKIQQIVEYIRRHT------------INNCDQILHMIEIWDKQRNRINKQIGYLYSD 331
Query: 236 FPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHM 273
F + + + + + + + LL+++ ++ L V ++H+
Sbjct: 332 FTNYNEYRSVLEQIKTDTDLLYKNEEERILFVKNKLHI 369
>gi|294950275|ref|XP_002786548.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
gi|239900840|gb|EER18344.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 36/153 (23%)
Query: 114 TNLSMSLTDSSA--RKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-------PN 164
+ + MS+ D++A K + V++NF + AY+TS L +L F +++ QL PN
Sbjct: 376 SKMMMSVDDTTAITNKSCRLFVDSNFAVTAYTTSSLDLRLLGTFVQLQRQLGDGREYDPN 435
Query: 165 ---LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR------------------ 203
++G +T+ S+ +A + G+T+E IIS+L+ + PR A
Sbjct: 436 DFGCVLGTLTQSSVQSAAQRGVTSEYIISYLKSHVDPRAAHMGSQGGRSSAATANTGAAR 495
Query: 204 ----IPSVPENVCDQIRLWESDL--NRVEMTPA 230
I +P NV QI LWE + NR+ + P
Sbjct: 496 GEKFIDGIPANVVTQITLWEREAIHNRLRIDPG 528
>gi|340508252|gb|EGR33999.1| hypothetical protein IMG5_027880 [Ichthyophthirius multifiliis]
Length = 454
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 52/188 (27%)
Query: 85 SMIKDFADLGLVK-LQQGRKESWFIPTKLATNL---SMSLTDSSARKEGFVVVETNFRMY 140
++ D A LG++K G+++ F T L S+ + +A+ ++VETNF +Y
Sbjct: 260 KILSDLAKLGMIKEFDLGQQKKVFGITPLIWQFCYRSIDIKTINAK----IIVETNFNLY 315
Query: 141 AY----------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIIS 190
AY S SK ++L+ FSKI Y P+LIV +T+ + AF GIT++ +I
Sbjct: 316 AYLDYNPQNKTFSESKYIRDLLKKFSKIHYTFPHLIVAQLTEAKMKQAFNQGITSKLLIE 375
Query: 191 FLQQNAHPRVADRIPS----------------------------------VPENVCDQIR 216
F + + ++ + VP+N+ +I+
Sbjct: 376 FFHKTSDAKLKKYLKDKQMSAIKLTQSLNLNKKKLDFLQLFQKKEEDFSLVPDNIIQEIQ 435
Query: 217 LWESDLNR 224
WE + ++
Sbjct: 436 TWEKEKDK 443
>gi|47212202|emb|CAF90416.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWE 219
Y+ PN++V +T+ES+ A NGITA+Q ++F + P + P +P + DQIRLWE
Sbjct: 282 YRFPNVVVAQVTRESVQQAIANGITAQQRLTF-DLWSSPTPLSQTPVLPPTITDQIRLWE 340
Query: 220 SDLNRVEMTPA 230
+ +R++ T A
Sbjct: 341 LERDRLQFTEA 351
>gi|145509120|ref|XP_001440504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407721|emb|CAK73107.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 40/191 (20%)
Query: 66 LCQGILEAYNLNTL--SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS 123
LC +L+ + + E Q+++IKD + GL Q + F L N
Sbjct: 209 LCLSVLDPMKIYQMPNEEWQKNVIKDLQEFGLTHYQDQQMRITF----LFWNFLYEPPSV 264
Query: 124 SARKEGFVVVETNFRMYAYSTS------KLHCEILRLFSKIEYQLPNLIVGAITKESLYN 177
S + ++VE NFR+YAY S ++ C +L LFS+I+ + LI+ +++ S+
Sbjct: 265 SIGIQCNIIVEANFRIYAYLNSGDQQEEEILCNLLNLFSEIKKRFKILIIADLSESSIRK 324
Query: 178 AFENGITAEQIISFLQQNAHP------------------------RV-ADRIPS---VPE 209
A + A+QII FL+ N+ RV + +P +P
Sbjct: 325 AVRENLQAKQIIQFLEMNSKQLKQQAATEKQHKSNDELKKRLDFLRVFQEGVPEKAIIPH 384
Query: 210 NVCDQIRLWES 220
NV QI+ WES
Sbjct: 385 NVVQQIQYWES 395
>gi|162605818|ref|XP_001713424.1| hypothetical protein GTHECHR3089 [Guillardia theta]
gi|13794356|gb|AAK39733.1|AF083031_90 hypothetical protein [Guillardia theta]
Length = 180
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 7/136 (5%)
Query: 90 FADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGF-VVVETNFRMYAYSTSKLH 148
F ++GL+ L K++ I K+ + + E F +++E NFR+Y +
Sbjct: 5 FYNMGLINLTG--KKTIQISNKIINLEKNGIIIQKKKTERFKIIIEVNFRIYIFKYFDFS 62
Query: 149 CEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVP 208
+ SK Y LP VG I + F+ G+T++ I+ F+++N H ++IPS
Sbjct: 63 NSFFKFISKKIYSLPYFYVGEINENYSRRLFQLGVTSDNILKFIKKNLH-YTCNKIPSTF 121
Query: 209 ENVCDQIRLWESDLNR 224
E D++R+WE +
Sbjct: 122 E---DRLRIWEISFKK 134
>gi|401419872|ref|XP_003874425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490661|emb|CBZ25923.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 559
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 49/144 (34%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 189
++ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 359 IITETNFRLYAYTDDADLLNILNQFAELEEIVNGNLHCYRVTRDSFAAAMRKGITAAQVL 418
Query: 190 SFLQQNAHPRVADR---------------------------------IPS---------- 206
FL AHP + R +P
Sbjct: 419 RFLSLRAHPSMLRRHGEREESGDTAAPSSAGGVSSSLTFSAPHRRGAVPGTCGGTTAIDA 478
Query: 207 -----VPENVCDQIRLWESDLNRV 225
VP++ CDQ+R+WES+ +RV
Sbjct: 479 VSTIVVPQSFCDQMRMWESECHRV 502
>gi|398024082|ref|XP_003865202.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503439|emb|CBZ38524.1| hypothetical protein, conserved [Leishmania donovani]
Length = 557
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 49/144 (34%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 189
++ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 190 SFLQQNAHPRVADR---------------------------IPS---------------- 206
FL AHP + R P
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 207 -----VPENVCDQIRLWESDLNRV 225
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|146103275|ref|XP_001469523.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073893|emb|CAM72632.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 557
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 59/144 (40%), Gaps = 49/144 (34%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 189
++ ETNFR+YAY+ IL F+K+E + NL +T++S +A GITA Q++
Sbjct: 357 IITETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVL 416
Query: 190 SFLQQNAHPRVADR---------------------------IPS---------------- 206
FL AHP + R P
Sbjct: 417 RFLSLRAHPSMLRRHGEREENGDTTSPSSAGGASSSFTFSASPRRRAVAGTCGSTTSIDA 476
Query: 207 -----VPENVCDQIRLWESDLNRV 225
VP++ CDQ+ +WES+ RV
Sbjct: 477 VSTLVVPQSFCDQMHMWESECRRV 500
>gi|154345556|ref|XP_001568715.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066057|emb|CAM43844.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 561
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 48/143 (33%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 189
++ ETNFR+YAY+ IL F+++E + NL +T++S A GITA Q++
Sbjct: 362 IITETNFRLYAYTEDSDLLNILHQFAELEEVVNGNLHCYRVTRDSFAAAMRKGITATQVL 421
Query: 190 SFLQQNAHPRVADR------------------IPS------------------------- 206
FL AHP + R PS
Sbjct: 422 RFLSLRAHPSMLRRYGEKEENGDTKSPSPAGGAPSSTFSAPPRRAAVAGTRGSTTFIDAV 481
Query: 207 ----VPENVCDQIRLWESDLNRV 225
VP + CDQ+R+WE + RV
Sbjct: 482 TTLVVPHSFCDQLRMWERECRRV 504
>gi|340057132|emb|CCC51474.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 502
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 34/130 (26%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ ETNFR+YAY+ +K IL F+ E ++ +IV +T+ S A GI A+
Sbjct: 315 EDTIITETNFRLYAYTRNKHLLAILEQFAIKEAEVDGMIVCFRVTRASFAAALRKGIGAQ 374
Query: 187 QIISFLQQNAH-----------PR--------------------VADRIPSVPENVCDQI 215
I+ FL+ AH PR AD+I +P + CDQ+
Sbjct: 375 HIVQFLRVKAHSSMLKHQLTCDPRDSAGLAATSSRVTPTDTPWTHADKI--IPRSFCDQL 432
Query: 216 RLWESDLNRV 225
WE + R+
Sbjct: 433 FTWERECRRL 442
>gi|342184190|emb|CCC93671.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 499
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 29/127 (22%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ ETNFR+YAY+ + IL F+ E + +IV +T+ S A GI A+
Sbjct: 314 EDTIITETNFRLYAYTRNPDLLGILDQFAVKEIDIDGIIVCYRVTRSSFALALRKGIDAK 373
Query: 187 QIISFLQQNAHPR-----------VADRI----------PS-------VPENVCDQIRLW 218
I+ FL AHP V+D + PS +P++ CDQ+ W
Sbjct: 374 HILQFLTLKAHPSMVRKDGGASRDVSDNLALNSVAGFGKPSEVHQSTVIPQSFCDQLMTW 433
Query: 219 ESDLNRV 225
E + R+
Sbjct: 434 ERECRRL 440
>gi|157876614|ref|XP_001686652.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129727|emb|CAJ09033.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 626
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 58/144 (40%), Gaps = 49/144 (34%)
Query: 131 VVVETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAFENGITAEQII 189
++ ETNFR++AY+ IL F+++E + NL +T+ S A GITA Q++
Sbjct: 426 IITETNFRLFAYTNDADLLNILNQFAELEEIVNGNLHCYRVTRASFAAAMRKGITAAQVL 485
Query: 190 SFLQQNAHPR-------------------------------------VADRIPS------ 206
FL AHP VA S
Sbjct: 486 RFLSLRAHPSMLRRHGEREENGDTASPSSAGGASSSFTFSASPRRGAVAGTCGSTTSIDA 545
Query: 207 -----VPENVCDQIRLWESDLNRV 225
VP++ CDQ+R+WES+ RV
Sbjct: 546 VSTLVVPQSFCDQMRMWESECRRV 569
>gi|261332554|emb|CBH15549.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ ETNFR+YAY+ + IL F+ E + ++V +T+ S +A GI A
Sbjct: 315 EDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTRASFASALAKGIGAN 374
Query: 187 QIISFLQQNAHPRVADR------------IPS----------------VPENVCDQIRLW 218
I+ FL AHP + + +P+ +P++ CDQ+ W
Sbjct: 375 HILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASAGFGNTSEYRQGNIIPQSFCDQLFTW 434
Query: 219 ESDLNRV 225
E + R+
Sbjct: 435 ERECRRL 441
>gi|71747422|ref|XP_822766.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70832434|gb|EAN77938.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 29/127 (22%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ ETNFR+YAY+ + IL F+ E + ++V +T+ S +A GI A
Sbjct: 315 EDTIITETNFRLYAYTKNPDMLRILDQFAVKEVDVVGMVVCYRVTRASFASALAKGIGAN 374
Query: 187 QIISFLQQNAHPRVADR------------IPS----------------VPENVCDQIRLW 218
I+ FL AHP + + +P+ +P++ CDQ+ W
Sbjct: 375 HILQFLTVKAHPSMIKQSNSEAGDPSCPVLPAASVGFGNTSEYRQGNIIPQSFCDQLFTW 434
Query: 219 ESDLNRV 225
E + R+
Sbjct: 435 ERECRRL 441
>gi|324515605|gb|ADY46257.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 245
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 53/87 (60%), Gaps = 6/87 (6%)
Query: 80 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKE-----GFVVVE 134
SE + + +LGLV +++ RK+ +F T L +L++S + +A E G+++VE
Sbjct: 158 SETITNFLMQLRELGLVFIRK-RKDGYFFITPLFAHLTVSSSSETAVAEKRTHSGYIIVE 216
Query: 135 TNFRMYAYSTSKLHCEILRLFSKIEYQ 161
TN+R+YAY+ S L IL F+++ Y+
Sbjct: 217 TNYRVYAYTDSSLQLAILSTFTEMLYR 243
>gi|414589532|tpg|DAA40103.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 877
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 9/48 (18%)
Query: 219 ESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLV 266
++DLNRVEM P++ YE+FPS+ ARD LL +DSK+MRL+
Sbjct: 824 QTDLNRVEMIPSYLYEDFPSK---------ARDNGYLLCDDSKRMRLI 862
>gi|407397449|gb|EKF27748.1| DNA repair and transcription factor protein [Trypanosoma cruzi
marinkellei]
Length = 501
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 30/128 (23%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+++ A + GI +
Sbjct: 315 EDTIITEANFRLYAYTKNPDLLNILNQFAERDAEIDQMIACYRVTRKTFAAALKRGIGSS 374
Query: 187 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 217
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRNHRDGDSKKTSGLSVLGAGTRFKNTSDIRIDGIIPQSFCDQLMT 434
Query: 218 WESDLNRV 225
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|146161819|ref|XP_001033510.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila]
gi|146142827|gb|EAR85847.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila
SB210]
Length = 484
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 51/144 (35%)
Query: 131 VVVETNFRMYAY-------------STSKLHCE----ILRLFSKIEYQLPNLIVGAITKE 173
+ +ETNF +YAY T K E +L F + Y+ P+LIVG ++++
Sbjct: 322 ITIETNFNVYAYIDQEDPKEIKDSKDTLKDQTEHIEKLLASFCDLHYKFPHLIVGQLSEQ 381
Query: 174 SLYNAFENGITAEQIISFLQQNAHP----------------------------------R 199
+ F+NG+TA +I F + + P +
Sbjct: 382 KTKDQFKNGLTARLLIQFFNKTSDPQMKKYLKDKQMNAILLTQVQNLQKKKLEFLNLFKK 441
Query: 200 VADRIPSVPENVCDQIRLWESDLN 223
D +P+N+ +I WE + N
Sbjct: 442 TEDNFSLIPDNIQQEIETWEREKN 465
>gi|71650598|ref|XP_813994.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70878928|gb|EAN92143.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTKNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSS 374
Query: 187 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 217
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLMHHREGDSKKASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMT 434
Query: 218 WESDLNRV 225
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|71425201|ref|XP_813043.1| DNA repair and transcription factor protein [Trypanosoma cruzi
strain CL Brener]
gi|70877891|gb|EAN91192.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTRNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSS 374
Query: 187 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 217
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRHHREGDSKKASGLSVLGAGTRFKNASDIRIDEIIPQSFCDQLMT 434
Query: 218 WESDLNRV 225
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|407835017|gb|EKF99108.1| DNA repair and transcription factor protein, putative [Trypanosoma
cruzi]
Length = 501
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 30/128 (23%)
Query: 128 EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG-AITKESLYNAFENGITAE 186
E ++ E NFR+YAY+ + IL F++ + ++ +I +T+ + A + GI +
Sbjct: 315 EDTIITEANFRLYAYTRNPDLLNILNQFAERDAEVDQMIACYRVTRRTFAAALKRGIGSL 374
Query: 187 QIISFLQQNAHP------RVAD----------------------RIPS-VPENVCDQIRL 217
I+ FL AHP R D RI +P++ CDQ+
Sbjct: 375 HILQFLAVKAHPSMLRHHREGDSKKASGLSVLGAGTRFKKASDIRIDEIIPQSFCDQLMT 434
Query: 218 WESDLNRV 225
WE + R+
Sbjct: 435 WEKECRRL 442
>gi|337743331|gb|AEI73162.1| GTF2H4 [Kryptolebias marmoratus]
Length = 82
Score = 46.2 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 74 YNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLT-----------D 122
Y++ +SE + ++ + GLV Q+ RK + PT+LA L+ +T
Sbjct: 3 YSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTSNSSSSSNLSST 61
Query: 123 SSARKEGFVVVETNFRMYAYS 143
A GF+VVETN+R+YAY+
Sbjct: 62 QGAGDAGFIVVETNYRVYAYT 82
>gi|197107449|pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
gi|197107451|pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 257
P + + +P V DQIRLW+ +L+RV Y +F + + YA+D LLW
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLW 78
Query: 258 EDSKKMRLVVNAEIHMHMREFLR 280
+D KK + ++ E + + +F +
Sbjct: 79 KDDKKKKFFISKEGNSQVLDFAK 101
>gi|47194594|emb|CAF93785.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 23/109 (21%)
Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYA-------- 249
P + P +P + DQIRLWE + +R++ T Y +F S+ FE D A
Sbjct: 15 PTPLTQTPVLPPTITDQIRLWELERDRLQFTEGVLYNQFLSQTDFEVLRDRAQVGLFHCC 74
Query: 250 ---------------RDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 283
+ LLW+D+ +VV H +++F + Q
Sbjct: 75 YTIRQKVHQQLSPVLQSLGCLLWQDAAHRVMVVTLWGHSEVKKFWKRQK 123
>gi|241725008|ref|XP_002412209.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215505416|gb|EEC14910.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 75
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 213 DQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIH 272
DQ+RLWE + +R Y +F S+ F+ +YA D L+W++ K +VVN H
Sbjct: 2 DQLRLWELERDRFNFREGVLYSQFISQSDFQLLRNYASDLGVLIWDNPSKRVMVVNRNGH 61
Query: 273 MHMREFLR 280
++ F +
Sbjct: 62 DEVKRFWK 69
>gi|380492949|emb|CCF34234.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 343
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 73 AYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMS 119
AY+ N L+E +R+M+ D GL+ + + + +F PT+LAT L+ S
Sbjct: 250 AYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYF-PTRLATTLTSS 295
>gi|197107383|pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 211 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 270
V DQIRLW+ +L+RV Y +F + + YA+D LLW+D KK + ++ E
Sbjct: 4 VVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKE 63
Query: 271 IHMHMREFLRGQNK 284
+ + +F + + K
Sbjct: 64 GNSQVLDFAKRKLK 77
>gi|261405782|ref|YP_003242023.1| hypothetical protein GYMC10_1934 [Paenibacillus sp. Y412MC10]
gi|261282245|gb|ACX64216.1| hypothetical protein GYMC10_1934 [Paenibacillus sp. Y412MC10]
Length = 572
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
+ V +T++S+ A + G+ ++I +F ++A +PENV + W +++R
Sbjct: 364 MTVYRLTRDSVIQAAKAGMEPDRIAAFFSKHA-------AAGMPENVQSALYQWGKEMDR 416
Query: 225 VEMTPAHYYEE-FPSRDVFEAACDYARDRSGLLW 257
+ + YEE FP D A D DR + W
Sbjct: 417 AGLNESPRYEEAFPEEDTELAGTD-GNDRYPMQW 449
>gi|440297879|gb|ELP90520.1| hypothetical protein EIN_018790 [Entamoeba invadens IP1]
Length = 1702
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 181 NGITAEQIISFLQQN--AHPRVADRIPSVPENVCDQI-RLWESDLNRVEMTPAHYYEEFP 237
+G EQ+ F+ +N A+ R+ ++IPS+P+ C ++ + ++ + + H E P
Sbjct: 1211 SGKVCEQMAFFISKNPKAYERLKEKIPSLPDKSCVELFDFFSENVQKNQQKYKHLNYESP 1270
Query: 238 SRDVFEAACDYARD 251
S D E + ARD
Sbjct: 1271 SEDFLEQYTELARD 1284
>gi|359075905|ref|XP_002695282.2| PREDICTED: sialic acid binding Ig-like lectin 5-like [Bos taurus]
Length = 520
Score = 37.7 bits (86), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 97 KLQQGRKESWFIPTKL-ATNLSMSLTDSSARKEG--FVVVETNFRMYAYSTSKLHCEILR 153
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 76 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 135
Query: 154 LFSKIEYQLPNLI 166
L + + P +
Sbjct: 136 LTHQPHVRSPGAL 148
>gi|296477381|tpg|DAA19496.1| TPA: sialic acid binding Ig-like lectin 5-like [Bos taurus]
Length = 546
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 97 KLQQGRKESWFIPTKL-ATNLSMSLTDSSARKEG--FVVVETNFRMYAYSTSKLHCEILR 153
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 82 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 141
Query: 154 LFSKIEYQLPNLI 166
L + + P +
Sbjct: 142 LTHQPHVRSPGAL 154
>gi|358416930|ref|XP_875692.5| PREDICTED: LOW QUALITY PROTEIN: sialic acid binding Ig-like lectin
5-like [Bos taurus]
Length = 479
Score = 37.7 bits (86), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 97 KLQQGRKESWFIPTKL-ATNLSMSLTDSSARKEG--FVVVETNFRMYAYSTSKLHCEILR 153
KL++G + + +P + A N S+S+TD +A G F VET+FR YAY L ++
Sbjct: 76 KLREGTQGRFSVPGEPQAGNCSLSITDVNAGDSGTYFFQVETHFRKYAYLNKMLFLNVIA 135
Query: 154 LFSKIEYQLPNLI 166
L + + P +
Sbjct: 136 LTHQPHVRSPGAL 148
>gi|220914901|ref|YP_002490209.1| ABC transporter [Methylobacterium nodulans ORS 2060]
gi|219952652|gb|ACL63042.1| ABC transporter related [Methylobacterium nodulans ORS 2060]
Length = 261
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 70 ILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTD 122
+L A N LS I+ + DFA++ V+L GRK + I T LA N +M L D
Sbjct: 132 VLRALNDEALSLIEAVGLADFAEVPAVELSYGRKRALEIATTLALNPAMLLLD 184
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,997,238,570
Number of Sequences: 23463169
Number of extensions: 149614592
Number of successful extensions: 333699
Number of sequences better than 100.0: 402
Number of HSP's better than 100.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 332656
Number of HSP's gapped (non-prelim): 654
length of query: 284
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 143
effective length of database: 9,050,888,538
effective search space: 1294277060934
effective search space used: 1294277060934
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)