BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023328
         (284 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
 pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
          Length = 108

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 43/83 (51%)

Query: 198 PRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLW 257
           P   + +  +P  V DQIRLW+ +L+RV       Y +F +   +     YA+D   LLW
Sbjct: 19  PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLW 78

Query: 258 EDSKKMRLVVNAEIHMHMREFLR 280
           +D KK +  ++ E +  + +F +
Sbjct: 79  KDDKKKKFFISKEGNSQVLDFAK 101


>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
           C-Terminal Domain Of Tfb2
          Length = 80

 Score = 38.9 bits (89), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%)

Query: 211 VCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAE 270
           V DQIRLW+ +L+RV       Y +F +   +     YA+D   LLW+D KK +  ++ E
Sbjct: 4   VVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKE 63

Query: 271 IHMHMREFLRGQNK 284
            +  + +F + + K
Sbjct: 64  GNSQVLDFAKRKLK 77


>pdb|3CDK|B Chain B, Crystal Structure Of The Co-Expressed Succinyl-Coa
           Transferase A And B Complex From Bacillus Subtilis
 pdb|3CDK|D Chain D, Crystal Structure Of The Co-Expressed Succinyl-Coa
           Transferase A And B Complex From Bacillus Subtilis
          Length = 219

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 89  DFADLGLVKL-QQGRKESWFIPTKLATNL--SMSLTDSSARKEGFVVVETNFRMYAYSTS 145
           D A LG +++ +QG   +W IP K+   +  +M L + + R    VV+  +   +  S  
Sbjct: 101 DLAILGGMEVSEQGDLANWMIPGKMVKGMGGAMDLVNGAKR---IVVIMEHVNKHGESKV 157

Query: 146 KLHCEILRLFSKIEYQL 162
           K  C +     K+ ++L
Sbjct: 158 KKTCSLPLTGQKVVHRL 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,639,974
Number of Sequences: 62578
Number of extensions: 281649
Number of successful extensions: 550
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 7
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)