BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023328
(284 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 215 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 260
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 261 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 215 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 260
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 261 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 319
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 320 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 379
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 380 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 439
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 440 LMVVTPAGHSDVKRFWKRQK 459
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 148/260 (56%), Gaps = 17/260 (6%)
Query: 26 FLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85
F+LQ + +AQ S M + + I S L L F G + Y++ +S+ +
Sbjct: 216 FMLQYLQTAQ--------SRGMDLVE----ILSFLFQLSFSTLG--KDYSVEGMSDSLLN 261
Query: 86 MIKDFADLGLVKLQQGRKESWFIPTKLATNLS--MSLTDSSARKEGFVVVETNFRMYAYS 143
++ + GLV Q+ RK + PT+LA NLS +S + + GF+VVETN+R+YAY+
Sbjct: 262 FLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYT 320
Query: 144 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADR 203
S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + +
Sbjct: 321 ESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQ 380
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
P +P + DQIRLWE + +R+ T Y +F S+ FE +AR+ L++E+S K
Sbjct: 381 NPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 440
Query: 264 RLVVNAEIHMHMREFLRGQN 283
+VV H ++ F + Q
Sbjct: 441 LMVVTPAGHSDVKRFWKRQK 460
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 161/322 (50%), Gaps = 54/322 (16%)
Query: 9 LPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQS------ILRS 62
L T++ L+AYA WE L ++ + +A+ P ++ + +RG L+ I R+
Sbjct: 125 LVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRA 181
Query: 63 -LKFLCQGI-------------------------------------LEAYNLNTLSEIQR 84
+FL Q I AY+++ L++ Q+
Sbjct: 182 GFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQ 241
Query: 85 SMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK------EGFVVVETNFR 138
M++D + GLV Q+ F PT+LAT L+ ++ +GF++VETN+R
Sbjct: 242 IMLEDLREYGLV-YQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYR 300
Query: 139 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP 198
+YAY++S L I+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP
Sbjct: 301 LYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHP 360
Query: 199 RVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWE 258
++ +P +P + DQI LWE + NR+ TP + +F + F+ A +YA++ L+W+
Sbjct: 361 QMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAVEYAKELGVLVWD 420
Query: 259 DSKKMRLVVNAEIHMHMREFLR 280
S K + M +L+
Sbjct: 421 SSLKRMFFITTTGAQPMIAYLK 442
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/331 (29%), Positives = 162/331 (48%), Gaps = 64/331 (19%)
Query: 15 LEAYAIGQWECFLLQLISSAQAERPTNF------SSSMMKVFQRGLLIQSILRSLKFLCQ 68
L+A+A+ QWE L ++ ++ P++ S +M+ + GL I + +FL Q
Sbjct: 133 LDAHAVSQWEMILHFMVGTSIGRTPSDGVLNLLKHSGLMEPERGGLRITNA--GFQFLLQ 190
Query: 69 ----------------------------------GILEA---YNLNTLSEIQRSMIKDFA 91
G LE Y+L+ LSE Q+ M++D
Sbjct: 191 DVNAQIWTLLLQYLNMSEYLQMDPVDVLNFIFMLGSLELGQDYSLSALSETQKHMLEDLR 250
Query: 92 DLGLVKLQQGRKESWFIPTKLATNLSM------------------SLTDSSARKEGFVVV 133
D G+V Q+ F PT+LAT L+ +++ S A GF+++
Sbjct: 251 DYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADSGFIIL 309
Query: 134 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQ 193
ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQII++L
Sbjct: 310 ETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQIITYLS 369
Query: 194 QNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRS 253
+AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++ YA++
Sbjct: 370 VHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDVSTYAKELG 429
Query: 254 GLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284
LL+E+ K + V + EF++ +N+
Sbjct: 430 VLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 131/257 (50%), Gaps = 49/257 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLAT----------------- 114
+AY + LS QR+M++D D GL+ Q + F PT+LAT
Sbjct: 236 KAYKCDQLSNTQRTMLQDMRDYGLI-YQNQSDYAKFYPTRLATLLTSDTKAFRSASVALD 294
Query: 115 ------NLSMSLTDSSARKE-------GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161
N + ++ S + E G +++ETNF++Y+YS S L IL LF ++ +
Sbjct: 295 SVLNKANETTAVEGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSR 354
Query: 162 LPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------VADR 203
N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V +
Sbjct: 355 FANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKET 414
Query: 204 IPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKM 263
+ +P V DQIRLW+ +L+R+ + Y +F S ++ DYA+D LLW++ KK
Sbjct: 415 LQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQTVADYAKDIGVLLWQNEKKK 474
Query: 264 RLVVNAEIHMHMREFLR 280
V+ E + + +F R
Sbjct: 475 MFFVSTEGNSQVLDFHR 491
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 136/236 (57%), Gaps = 18/236 (7%)
Query: 58 SILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKES--WFIPTKLATN 115
S L L FL G Y ++ LSE Q+ + GL+ + R +S F PT+L +
Sbjct: 249 SFLFRLSFLNLG--RGYLVSELSEQQKEYLFALKQFGLIYM---RTDSSILFYPTRLIIS 303
Query: 116 LS----MSLTDS-------SARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
L+ +SL S + +++G++V+ETN+R+YAY++S L +L LF K+ Y+LPN
Sbjct: 304 LTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPN 363
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224
L VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR
Sbjct: 364 LAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNR 423
Query: 225 VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
+ T + Y FP+ D + A +A+++ +W LVV E + +R F++
Sbjct: 424 ITYTKSVLYNSFPTNDCYIATLKFAKEQDYYIWSHDPLKTLVVKEEGNDPIRNFIK 479
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 132 bits (333), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 134/267 (50%), Gaps = 61/267 (22%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS---MSLTDSSA--- 125
+AY++ LSE Q++M++D D GLV Q+ S F PT+LAT L+ +S+ +S
Sbjct: 246 KAYSVVGLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVN 304
Query: 126 -----RKEGF--------------------------VVVETNFRMYAYSTSKLHCEILRL 154
R EG ++VETNF++Y+YS S L IL L
Sbjct: 305 SVLRQRAEGVDGKVLNGTALGDDDLQAGGEGALDGALIVETNFKLYSYSNSPLQIAILSL 364
Query: 155 FSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHP---RVA---------- 201
F ++ + N++ G IT+ES+ A NGITA+QII++++ +AHP R+A
Sbjct: 365 FIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLEL 424
Query: 202 -----DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLL 256
D + +P V DQI+LW+ +L+R+ + + +F + ++ YARD LL
Sbjct: 425 DPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQVLAQYARDIGVLL 484
Query: 257 WEDSKKMRLVVNAE-----IHMHMREF 278
W D KK V+ E I H R+F
Sbjct: 485 WSDDKKKMFFVSKEGNAQVIDFHKRKF 511
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/263 (30%), Positives = 132/263 (50%), Gaps = 51/263 (19%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY+ LSE Q M+ D D GLV Q+ + F PT+LA L+
Sbjct: 239 KAYSTENLSETQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAME 297
Query: 118 --MSLTDSSAR----------------KEGFVVVETNFRMYAYSTSKLHCEILRLFSKIE 159
++ D +A+ ++G +++ETNF++Y+Y S L IL LF ++
Sbjct: 298 SVLNKPDDAAKSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLK 357
Query: 160 YQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------A 201
+ N++ G IT+ES+ A NGITA+Q+I++L+ +AHP++
Sbjct: 358 SRFANMVAGQITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCK 417
Query: 202 DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSK 261
D + +P V DQI+LW+ +L+RV Y +F + F C YA+D LLW+D +
Sbjct: 418 DPLQVLPPTVVDQIKLWQLELDRVLTYEGSLYIDFDTAQDFNMLCKYAQDIGALLWKDDR 477
Query: 262 KMRLVVNAEIHMHMREFLRGQNK 284
K +L V+ E + + E+ + + K
Sbjct: 478 KRKLFVSREGNAQVLEYAKRKIK 500
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/267 (29%), Positives = 128/267 (47%), Gaps = 72/267 (26%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARK---- 127
+ Y +++LSE Q SM+ D D GL+ Q+ F PT+LAT L+ +DS+A K
Sbjct: 238 KGYTVSSLSETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLT---SDSAALKSPSM 293
Query: 128 -----------------------EGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 164
+G +++ETNF++YAY+ S L IL LF ++ + N
Sbjct: 294 AMEQALESTTETEEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSN 353
Query: 165 LIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVA----------------------- 201
++ G IT+ES+ NA NGITA+QII FL+ +AH ++
Sbjct: 354 MVCGQITRESIRNALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAG 413
Query: 202 ------------------DRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFE 243
++ +P V DQI+LW+ +L+R++ + +++F S+ FE
Sbjct: 414 GAPQSQMMTNENGTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFE 473
Query: 244 AACDYARDRSGLLWEDSKKMRLVVNAE 270
A +YA + LLW + KM+ V +
Sbjct: 474 ALSNYASEIGVLLWSNKSKMKFFVTKD 500
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 131/273 (47%), Gaps = 65/273 (23%)
Query: 72 EAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLS-------------- 117
+AY ++ LSE QR M++D D GLV Q+ +S F PTKLA L+
Sbjct: 235 KAYKIDALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMD 293
Query: 118 -------------------MSLTDSSARKE-------------GFVVVETNFRMYAYSTS 145
S TD + + G ++VETNF++Y+YS S
Sbjct: 294 SVLRQNREEPSVNEDGANGKSTTDITTSDDLNKAGLKNQDIPDGSLIVETNFKIYSYSNS 353
Query: 146 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV----- 200
L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++
Sbjct: 354 PLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAE 413
Query: 201 -------------ADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACD 247
+ + +P V DQIRLW+ +L+RV Y +F + +
Sbjct: 414 EKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSK 473
Query: 248 YARDRSGLLWEDSKKMRLVVNAEIHMHMREFLR 280
YA+D LLW+D KK + ++ E + + +F +
Sbjct: 474 YAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>sp|P14669|ANXA3_RAT Annexin A3 OS=Rattus norvegicus GN=Anxa3 PE=1 SV=4
Length = 324
Score = 36.2 bits (82), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 15/126 (11%)
Query: 14 DLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGL----------LIQSILRSL 63
DL+ G +E ++ LI++ P F + +K RG+ L R +
Sbjct: 72 DLKGDLSGHFEHVMVALITA-----PAVFDAKQLKKSMRGMGTDEDTLIEILTTRTSRQM 126
Query: 64 KFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDS 123
K + Q AY N +I DF L GR ES + LA + +L D+
Sbjct: 127 KEISQAYYTAYKKNLRDDISSETSGDFRKALLTLADGGRDESLKVDEHLAKKDAQTLYDA 186
Query: 124 SARKEG 129
+K G
Sbjct: 187 GEKKWG 192
>sp|Q2JTM9|Y1810_SYNJA UPF0182 protein CYA_1810 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=CYA_1810 PE=3 SV=1
Length = 851
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 35/77 (45%), Gaps = 18/77 (23%)
Query: 181 NGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRD 240
N +TAE + F + PRV+ R P V + + RVE PA YY E + D
Sbjct: 426 NVVTAEGLPDFFLSDIPPRVSPRYPEV------------AQVLRVEQ-PALYYSELTTTD 472
Query: 241 VFEAA----CDY-ARDR 252
VF A DY A DR
Sbjct: 473 VFVGAEARELDYPAADR 489
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,749,075
Number of Sequences: 539616
Number of extensions: 3560207
Number of successful extensions: 8100
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 8069
Number of HSP's gapped (non-prelim): 27
length of query: 284
length of database: 191,569,459
effective HSP length: 116
effective length of query: 168
effective length of database: 128,974,003
effective search space: 21667632504
effective search space used: 21667632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)