Query 023328
Match_columns 284
No_of_seqs 136 out of 196
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 04:57:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023328.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023328hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 2E-34 6.8E-39 233.9 6.1 88 197-284 18-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 2.2E-32 7.6E-37 211.7 6.8 76 209-284 2-77 (80)
3 1b0n_B Protein (SINI protein); 58.7 8 0.00027 27.6 3.2 24 175-198 19-42 (57)
4 3s4e_A Dual specificity protei 48.8 11 0.00036 29.7 2.7 56 163-224 83-144 (144)
5 3lab_A Putative KDPG (2-keto-3 44.8 27 0.00091 30.9 5.0 92 129-230 38-141 (217)
6 1b4a_A Arginine repressor; hel 37.9 45 0.0015 27.6 5.1 58 21-107 5-62 (149)
7 1zzw_A Dual specificity protei 37.5 65 0.0022 25.0 5.8 47 170-222 94-144 (149)
8 1w8i_A Putative VAPC ribonucle 35.2 36 0.0012 27.0 3.9 111 131-260 3-121 (156)
9 2hl7_A Cytochrome C-type bioge 32.4 33 0.0011 26.1 3.1 25 172-196 49-73 (84)
10 2kw0_A CCMH protein; oxidoredu 30.9 40 0.0014 26.1 3.3 25 172-196 46-70 (90)
11 3e19_A FEOA; transcriptional r 29.4 11 0.00039 27.0 -0.0 33 61-96 5-37 (77)
12 2gjf_A Designed protein; proca 28.9 97 0.0033 21.9 5.1 46 237-282 17-68 (78)
13 1p6r_A Penicillinase repressor 28.8 42 0.0014 23.7 3.0 27 81-107 42-68 (82)
14 2k5l_A FEOA; structure, NESG, 27.7 7.5 0.00026 28.5 -1.3 33 61-96 2-34 (81)
15 1wj5_A Hypothetical protein (r 26.6 28 0.00096 28.4 1.8 29 82-111 79-108 (120)
16 3ezz_A Dual specificity protei 26.4 77 0.0026 24.4 4.4 54 162-221 82-141 (144)
17 2hxp_A Dual specificity protei 26.2 1.2E+02 0.004 23.9 5.6 48 170-223 96-147 (155)
18 1yz4_A DUSP15, dual specificit 25.4 1.4E+02 0.0047 23.5 5.9 55 162-222 85-145 (160)
19 3mhs_B Protein SUS1; multi-pro 25.4 40 0.0014 26.1 2.5 36 171-215 46-81 (96)
20 2lkp_A Transcriptional regulat 25.1 1.4E+02 0.0048 22.2 5.6 85 6-110 5-89 (119)
21 3v4g_A Arginine repressor; vib 24.4 44 0.0015 28.8 2.8 30 78-107 61-91 (180)
22 3df8_A Possible HXLR family tr 24.2 51 0.0017 25.1 2.9 36 80-116 57-92 (111)
23 2e0t_A Dual specificity phosph 23.8 1.3E+02 0.0045 23.2 5.4 53 162-222 86-145 (151)
24 3jth_A Transcription activator 23.6 65 0.0022 23.3 3.3 30 81-110 51-80 (98)
25 1vjq_A Designed protein; struc 23.3 96 0.0033 21.9 4.1 46 237-282 9-60 (79)
26 3sr0_A Adenylate kinase; phosp 22.7 52 0.0018 27.9 2.9 77 159-253 23-101 (206)
27 3cuo_A Uncharacterized HTH-typ 21.9 76 0.0026 22.5 3.4 30 81-110 53-82 (99)
28 3emu_A Leucine rich repeat and 21.3 1E+02 0.0035 24.6 4.3 54 163-222 89-148 (161)
29 3mhx_A Putative ferrous iron t 21.3 10 0.00035 28.0 -1.7 33 62-96 3-37 (85)
30 2nt2_A Protein phosphatase sli 21.0 1E+02 0.0034 23.8 4.1 46 170-221 92-141 (145)
31 2jsc_A Transcriptional regulat 20.9 77 0.0026 24.1 3.4 31 81-111 49-79 (118)
32 4e38_A Keto-hydroxyglutarate-a 20.8 72 0.0025 28.2 3.5 120 83-230 24-156 (232)
33 2d4z_A Chloride channel protei 20.5 75 0.0026 27.9 3.6 34 150-183 210-248 (250)
34 2r0b_A Serine/threonine/tyrosi 20.4 1.8E+02 0.0062 22.4 5.6 53 162-221 91-150 (154)
35 3lap_A Arginine repressor; arg 20.1 47 0.0016 28.2 2.1 27 81-107 51-78 (170)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=233.92 Aligned_cols=88 Identities=30% Similarity=0.591 Sum_probs=72.4
Q ss_pred CccccccCCCCChhHHHHHHHHHHhcCceeeccceeeccCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHH
Q 023328 197 HPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMR 276 (284)
Q Consensus 197 Hp~m~~~~p~lP~tV~dQIrLWe~E~~R~~~~~g~Ly~~f~s~~~fe~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~v~ 276 (284)
.|++....|+|||||+|||||||.||||+++++||||++|.|+++|+.+++||+++|+|+|+|+.+|+|||+.+||++|+
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk 97 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVL 97 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHH
Confidence 35555567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccC
Q 023328 277 EFLRGQNK 284 (284)
Q Consensus 277 ~f~k~~~~ 284 (284)
+|||++++
T Consensus 98 ~f~Kr~~~ 105 (108)
T 3dom_A 98 DFAKRKLK 105 (108)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999875
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-32 Score=211.72 Aligned_cols=76 Identities=32% Similarity=0.593 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHhcCceeeccceeeccCCCHHHHHHHHHHHHHcCeEeeecCCCceEEEeccccHHHHHHHhhccC
Q 023328 209 ENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 284 (284)
Q Consensus 209 ~tV~dQIrLWe~E~~R~~~~~g~Ly~~f~s~~~fe~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~v~~f~k~~~~ 284 (284)
|||+|||||||.|||||++++|+||++|+|+++|+.+++||+++|+|||+|+.+|+|||+.+||++||+|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999875
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=58.67 E-value=8 Score=27.59 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHHHcCCCHHHHHHHHhhcCCc
Q 023328 175 LYNAFENGITAEQIISFLQQNAHP 198 (284)
Q Consensus 175 v~~Al~~GITA~QIi~fL~~hAHp 198 (284)
|++|-+.|+|.++|..||..+-.+
T Consensus 19 I~~Ak~lGlsleEIrefL~l~~~~ 42 (57)
T 1b0n_B 19 MVEAKEANISPEEIRKYLLLNKKS 42 (57)
T ss_dssp HHHHHHTTCCHHHHHHHHHHC---
T ss_pred HHHHHHcCCCHHHHHHHHHHhccC
Confidence 689999999999999999987543
No 4
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=48.78 E-value=11 Score=29.70 Aligned_cols=56 Identities=9% Similarity=0.203 Sum_probs=38.5
Q ss_pred CceEEEE--eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhcCc
Q 023328 163 PNLIVGA--ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNR 224 (284)
Q Consensus 163 Pnlvvg~--iTReSv~-~A---l~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~~R 224 (284)
+-+|-|. ++|...- -| ...|.+.++.+.++++. .|.+ ...+....|++.||.+++|
T Consensus 83 ~VlVHC~~G~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 83 VVLVHSNAGVSRAAAIVIGFLMNSEQTSFTSAFSLVKNA-RPSI-----CPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-STTC-----CCCHHHHHHHHHTTHHHHC
T ss_pred eEEEEcCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHhccC
Confidence 4444443 6786443 33 25899999999999974 4532 2346899999999987653
No 5
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=44.78 E-value=27 Score=30.89 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=63.6
Q ss_pred ceEEEeeCceEEEecCChhHHHHHHHHHhhHhcCCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCCc
Q 023328 129 GFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAHP 198 (284)
Q Consensus 129 g~IIvETNFrvYAYT~S~lqiaiL~lF~~l~~r~Pnlvvg---~iTReSv~~Al~~GI-------TA~QIi~fL~~hAHp 198 (284)
|.=++|..|| +|-....+ ..+..++|+++|| ++|.+.+++|.+.|- +-.+++.+-+.+--
T Consensus 38 Gi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v- 107 (217)
T 3lab_A 38 GVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL- 107 (217)
T ss_dssp TCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH-
T ss_pred CCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC-
Confidence 6667887666 45444433 4556778999999 899999999999983 34567887776533
Q ss_pred cccccCCCCCh--hHHHHHHHHHHhcCceeeccc
Q 023328 199 RVADRIPSVPE--NVCDQIRLWESDLNRVEMTPA 230 (284)
Q Consensus 199 ~m~~~~p~lP~--tV~dQIrLWe~E~~R~~~~~g 230 (284)
.-.-+.|.+|- |..+=.+-|+.--+-++++++
T Consensus 108 ~~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa 141 (217)
T 3lab_A 108 DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPA 141 (217)
T ss_dssp HCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTT
T ss_pred CccCCCeEeCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 00001135564 777778889988888888764
No 6
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=37.86 E-value=45 Score=27.58 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=40.3
Q ss_pred hhHHHHHHHHhCCCCCCCCCCCChhHHHHHHhcCCcccchhhhccccccccccccCCCCCHHHHHHHHHhhhcCeeeEee
Q 023328 21 GQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLVKLQQ 100 (284)
Q Consensus 21 ~~WE~IL~~mVgs~~~~~~~~~s~~v~~lL~~~~Lm~~~lf~L~~~~~~lG~~Y~~~~Lt~~q~~~L~~l~~~GLvy~~~ 100 (284)
+|++.|+..+-... ...-.+..+.|+..|. .=+|-++=+||+++|+|..+.
T Consensus 5 ~R~~~I~~li~~~~-----~~tq~eL~~~L~~~G~------------------------~VtqaTisRDL~eL~~vKv~~ 55 (149)
T 1b4a_A 5 QRHIKIREIIMSND-----IETQDELVDRLREAGF------------------------NVTQATVSRDIKEMQLVKVPM 55 (149)
T ss_dssp HHHHHHHHHHHHSC-----CCSHHHHHHHHHHTTC------------------------CCCHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHCC-----CccHHHHHHHHHHcCC------------------------CcCHHHHHHHHHHcCCeEEEC
Confidence 56777777665332 2334566677666665 235778889999999999998
Q ss_pred CCCccee
Q 023328 101 GRKESWF 107 (284)
Q Consensus 101 ~~~~~fy 107 (284)
.++...|
T Consensus 56 ~~g~~~Y 62 (149)
T 1b4a_A 56 ANGRYKY 62 (149)
T ss_dssp SSSCEEE
T ss_pred CCCCEEE
Confidence 7777767
No 7
>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}
Probab=37.51 E-value=65 Score=25.00 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=34.3
Q ss_pred eCHHHHHHH----HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhc
Q 023328 170 ITKESLYNA----FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222 (284)
Q Consensus 170 iTReSv~~A----l~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~ 222 (284)
++|...--| ...|.+.++++.++++. +|.+ ..-+....|++.||.+.
T Consensus 94 ~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~l 144 (149)
T 1zzw_A 94 VSRSATIVIAYLMKHTRMTMTDAYKFVKGK-RPII-----SPNLNFMGQLLEFEEDL 144 (149)
T ss_dssp SSHHHHHHHHHHHHHSCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHHHHHHHHHHHHHH
Confidence 588876432 24799999999999876 4432 12347899999999874
No 8
>1w8i_A Putative VAPC ribonuclease AF_1683; structural genomics, unknown function, hypothetical protein, PSI, protein structure initiative, MCSG; 2.10A {Archaeoglobus fulgidus} SCOP: c.120.1.1
Probab=35.22 E-value=36 Score=26.98 Aligned_cols=111 Identities=12% Similarity=0.026 Sum_probs=63.9
Q ss_pred EEEeeCceEEEecC-ChhHHHHHHHHH-hhHhcCCceEEEEeCHHHHHHHHHcCC-CHHHHHHHHhhcCCccccccCCCC
Q 023328 131 VVVETNFRMYAYST-SKLHCEILRLFS-KIEYQLPNLIVGAITKESLYNAFENGI-TAEQIISFLQQNAHPRVADRIPSV 207 (284)
Q Consensus 131 IIvETNFrvYAYT~-S~lqiaiL~lF~-~l~~r~Pnlvvg~iTReSv~~Al~~GI-TA~QIi~fL~~hAHp~m~~~~p~l 207 (284)
++|.||.=||.+.. .|.+-....++. .+...-..+++..++-..+...+.+.. .+.+.+..|... +. ..++
T Consensus 3 i~lDTnvli~~l~~~~~~~~~a~~~l~~~~~~~~~~~~is~~vl~E~~~~l~~~~~~~~~~l~~l~~~--~~----~~v~ 76 (156)
T 1w8i_A 3 ALIDTGIFFGFYSLKDVHHMDSVAIVVHAVEGKWGRLFVTNHILDETLTLLKYKKLPADKFLEGFVES--GV----LNII 76 (156)
T ss_dssp EEECHHHHHHHHCTTSTTHHHHHHHHHHHHTTTTSEEEEEHHHHHHHHHHHHHTTCCHHHHHHHHTTT--SS----SEEE
T ss_pred EEEEhHHHHHHHcCCcHhHHHHHHHHHHHHhcCCCcEEecHHHHHHHHHHHHhhHHHHHHHHHHHhhC--CC----eEEE
Confidence 78999999998886 566666667776 554333557777777777776665421 566666655321 21 1255
Q ss_pred ChhHHHHHHHHHHhc-C-c---eeeccceeeccCCCHHHHHHHHHHHHHcCeEeeecC
Q 023328 208 PENVCDQIRLWESDL-N-R---VEMTPAHYYEEFPSRDVFEAACDYARDRSGLLWEDS 260 (284)
Q Consensus 208 P~tV~dQIrLWe~E~-~-R---~~~~~g~Ly~~f~s~~~fe~~~~yA~~~g~llw~~~ 260 (284)
|.+-.+-.+-|+.-. . + +.+.|+. ++..|+..|+.++..+
T Consensus 77 ~~~~~~~~~A~~l~~~~~~~~~l~~~Dal-------------i~A~A~~~g~~l~T~D 121 (156)
T 1w8i_A 77 YTDDEVERKALEVFKARVYEKGFSYTDAI-------------SEVVAEELKLKLISYD 121 (156)
T ss_dssp CCCHHHHHHHHHHHHHTTTSTTCCHHHHH-------------HHHHHHHHTCEEECSC
T ss_pred eCCHHHHHHHHHHHHHHhccCCCCHhHHH-------------HHHHHHHcCCEEEEeC
Confidence 544333333344322 1 1 2222221 2466788888888766
No 9
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=32.36 E-value=33 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.505 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 023328 172 KESLYNAFENGITAEQIISFLQQNA 196 (284)
Q Consensus 172 ReSv~~Al~~GITA~QIi~fL~~hA 196 (284)
|.-|++-+..|=|-+||++||...-
T Consensus 49 R~~V~~~l~~G~sd~eI~~~~v~RY 73 (84)
T 2hl7_A 49 RKQIYGQLQQGKSDGEIVDYMVARY 73 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6788999999999999999998653
No 10
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=30.92 E-value=40 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.513 Sum_probs=22.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHhhcC
Q 023328 172 KESLYNAFENGITAEQIISFLQQNA 196 (284)
Q Consensus 172 ReSv~~Al~~GITA~QIi~fL~~hA 196 (284)
|.-|++-+..|=|-+||++||...-
T Consensus 46 R~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 46 RQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 6788999999999999999998653
No 11
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=29.37 E-value=11 Score=26.98 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=28.3
Q ss_pred hhhccccccccccccCCCCCHHHHHHHHHhhhcCee
Q 023328 61 RSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLV 96 (284)
Q Consensus 61 f~L~~~~~~lG~~Y~~~~Lt~~q~~~L~~l~~~GLv 96 (284)
..|+.+. .|+.+-+...+.. ..+++.|.++|++
T Consensus 5 ~~L~~l~--~G~~~~I~~i~~~-~~~~~rL~~lGi~ 37 (77)
T 3e19_A 5 VPLSEMG--PGDKGIVVNILGG-HNARQKLVSMGLT 37 (77)
T ss_dssp EEGGGCC--TTCEEEEEEECSH-HHHHHHHHTTTCS
T ss_pred EEHhHCC--CcCEEEEEEEECC-HHHHHHHHHCCCC
Confidence 4688888 9999999888765 6899999999995
No 12
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=28.94 E-value=97 Score=21.92 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHH--HcCeEeeecCC----CceEEEeccccHHHHHHHhhc
Q 023328 237 PSRDVFEAACDYAR--DRSGLLWEDSK----KMRLVVNAEIHMHMREFLRGQ 282 (284)
Q Consensus 237 ~s~~~fe~~~~yA~--~~g~llw~~~~----kr~~~V~~~~h~~v~~f~k~~ 282 (284)
.+.+..+.+.+..+ ..++-.|..+. .-.+.|+++..+.+++++++.
T Consensus 17 ~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 17 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp CSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 45666777777766 67889997652 346899999999999999864
No 13
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=28.75 E-value=42 Score=23.67 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCccee
Q 023328 81 EIQRSMIKDFADLGLVKLQQGRKESWF 107 (284)
Q Consensus 81 ~~q~~~L~~l~~~GLvy~~~~~~~~fy 107 (284)
.+-..+|+.|.+-|+|-..+......|
T Consensus 42 ~Tv~~~l~rL~~kGlv~r~~~gr~~~y 68 (82)
T 1p6r_A 42 KTIQTMLLRLIKKGALNHHKEGRVFVY 68 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEecCCEEEE
Confidence 667889999999999977654333444
No 14
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=27.66 E-value=7.5 Score=28.49 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=27.0
Q ss_pred hhhccccccccccccCCCCCHHHHHHHHHhhhcCee
Q 023328 61 RSLKFLCQGILEAYNLNTLSEIQRSMIKDFADLGLV 96 (284)
Q Consensus 61 f~L~~~~~~lG~~Y~~~~Lt~~q~~~L~~l~~~GLv 96 (284)
..|+.+. .|+.+-+...+. ...+++.|.++||+
T Consensus 2 ~~Ls~l~--~G~~~~I~~i~~-~~~~~~rL~~lGl~ 34 (81)
T 2k5l_A 2 FSLRDAK--CGQTVKVVKLHG-TGALKRRIMDMGIT 34 (81)
T ss_dssp CBGGGSC--TTCEEEEEEECS-SSHHHHHHHHHTCC
T ss_pred eEHHHCC--CcCEEEEEEEEC-CHHHHHHHHHCCCC
Confidence 3578888 999998877766 56789999999995
No 15
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=26.63 E-value=28 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhcCeeeEeeCCCc-ceecchh
Q 023328 82 IQRSMIKDFADLGLVKLQQGRKE-SWFIPTK 111 (284)
Q Consensus 82 ~q~~~L~~l~~~GLvy~~~~~~~-~fy~pT~ 111 (284)
-.++-++-|.+-|+||++.++.+ -|| .|+
T Consensus 79 ifKeAi~~Lqe~G~VfqK~~~~d~lYy-VT~ 108 (120)
T 1wj5_A 79 VFKNALQLLQEKGLVFQRDSGSDKLYY-VTT 108 (120)
T ss_dssp HHHHHHHHHHHHTSEECSSCSSSCCBE-ECS
T ss_pred HHHHHHHHHHHCCEEEeccCCccceEE-eec
Confidence 34567889999999999975444 777 553
No 16
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=26.42 E-value=77 Score=24.40 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=37.4
Q ss_pred CCceEEEE--eCHHHHH-HH---HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHh
Q 023328 162 LPNLIVGA--ITKESLY-NA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221 (284)
Q Consensus 162 ~Pnlvvg~--iTReSv~-~A---l~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E 221 (284)
-|-+|=|. ++|...- -| ...|.+.++.+++++.. +|.+ ..-+....|++.||.+
T Consensus 82 ~~VlVHC~~G~~RS~~~~~aylm~~~~~~~~~A~~~v~~~-Rp~~-----~pn~~f~~qL~~~e~~ 141 (144)
T 3ezz_A 82 GRVLVHSQAGISRSATICLAYLMMKKRVRLEEAFEFVKQR-RSII-----SPNFSFMGQLLQFESQ 141 (144)
T ss_dssp CCEEEEESSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHTT-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCcc-----CCCHhHHHHHHHHHHH
Confidence 35556554 6787743 23 25899999999999964 4532 2235789999999975
No 17
>2hxp_A Dual specificity protein phosphatase 9; human phosphatase, structural genomics, PSI-2, protein structure initiative; 1.83A {Homo sapiens} PDB: 3lj8_A 1mkp_A
Probab=26.22 E-value=1.2e+02 Score=23.94 Aligned_cols=48 Identities=13% Similarity=0.202 Sum_probs=33.8
Q ss_pred eCHHHHH-HH-H--HcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhcC
Q 023328 170 ITKESLY-NA-F--ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLN 223 (284)
Q Consensus 170 iTReSv~-~A-l--~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~~ 223 (284)
++|...- -| + ..|.+.++++.++++. .|.+ ..-+....|+..||.+..
T Consensus 96 ~~RS~~vv~ayLm~~~~~~~~~A~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~~~ 147 (155)
T 2hxp_A 96 VSRSVTVTVAYLMQKLHLSLNDAYDLVKRK-KSNI-----SPNFNFMGQLLDFERSLR 147 (155)
T ss_dssp SSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-CSCC-----CCCHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHhh
Confidence 5888743 33 2 4799999999999875 3321 123578999999998753
No 18
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=25.39 E-value=1.4e+02 Score=23.49 Aligned_cols=55 Identities=11% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCceEEEE--eCHHHH-HHHH---HcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhc
Q 023328 162 LPNLIVGA--ITKESL-YNAF---ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222 (284)
Q Consensus 162 ~Pnlvvg~--iTReSv-~~Al---~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~ 222 (284)
-|-+|=|. ++|... --|+ ..|++.++++.++++. +|.+ ..-+...+|+..||.+.
T Consensus 85 ~~VlVHC~aG~~RSg~~~~aylm~~~~~~~~~a~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~~ 145 (160)
T 1yz4_A 85 GNCLVHSFAGISRSTTIVTAYVMTVTGLGWRDVLEAIKAT-RPIA-----NPNPGFRQQLEEFGWAS 145 (160)
T ss_dssp CCEEEEETTSSSHHHHHHHHHHHHHHCCCHHHHHHHHHHT-CTTC-----CCCHHHHHHHHHHHHTH
T ss_pred CeEEEECCCCCchHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHh
Confidence 45555553 689873 3333 4699999999999964 4432 22357999999999753
No 19
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=25.36 E-value=40 Score=26.12 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=28.4
Q ss_pred CHHHHHHHHHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHH
Q 023328 171 TKESLYNAFENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQI 215 (284)
Q Consensus 171 TReSv~~Al~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQI 215 (284)
.|+-+++. ..+|-+++++.+.-+|+- .||+.|...+
T Consensus 46 ~r~~i~~~--~~vt~~~L~~~I~P~Ar~-------~VP~~VK~El 81 (96)
T 3mhs_B 46 TKSEMNIN--ESTNFTQILSTVEPKALE-------MVSDSTRETV 81 (96)
T ss_dssp HHHHHHHH--TCCCHHHHHHHHHHHHHH-------TSCHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHhHHHHH-------HCCHHHHHHH
Confidence 34445444 799999999999988876 8999997765
No 20
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=25.09 E-value=1.4e+02 Score=22.15 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=45.7
Q ss_pred CCCCCChhHHHHHHhhhHHHHHHHHhCCCCCCCCCCCChhHHHHHHhcCCcccchhhhccccccccccccCCCCCHHHHH
Q 023328 6 TARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQSILRSLKFLCQGILEAYNLNTLSEIQRS 85 (284)
Q Consensus 6 ~~~~~~~~~Ld~ya~~~WE~IL~~mVgs~~~~~~~~~s~~v~~lL~~~~Lm~~~lf~L~~~~~~lG~~Y~~~~Lt~~q~~ 85 (284)
.++......++....+++..++.-|.+.. .-.++..|.. +-+. +.+ +.+...++ ..+-..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~il~~L~~-~~~s-------~~e--la~~l~is--~stvsr 64 (119)
T 2lkp_A 5 EGRNRPSAPLDSQAAAQVASTLQALATPS--------RLMILTQLRN-GPLP-------VTD--LAEAIGME--QSAVSH 64 (119)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHH-CCCC-------HHH--HHHHHSSC--HHHHHH
T ss_pred cCCCccccccCHHHHHHHHHHHHHhCCHH--------HHHHHHHHHH-CCCC-------HHH--HHHHHCcC--HHHHHH
Confidence 33334444555566667777777664322 1334555544 2222 122 22222222 366777
Q ss_pred HHHHhhhcCeeeEeeCCCcceecch
Q 023328 86 MIKDFADLGLVKLQQGRKESWFIPT 110 (284)
Q Consensus 86 ~L~~l~~~GLvy~~~~~~~~fy~pT 110 (284)
.|+.|.+.|+|...+.....+|.++
T Consensus 65 ~l~~Le~~Glv~~~~~~r~~~~~~~ 89 (119)
T 2lkp_A 65 QLRVLRNLGLVVGDRAGRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHCSEEEEEETTEEEEEES
T ss_pred HHHHHHHCCCEEEEecCCEEEEEEc
Confidence 8999999999977654444555344
No 21
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=24.40 E-value=44 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCCH-HHHHHHHHhhhcCeeeEeeCCCccee
Q 023328 78 TLSE-IQRSMIKDFADLGLVKLQQGRKESWF 107 (284)
Q Consensus 78 ~Lt~-~q~~~L~~l~~~GLvy~~~~~~~~fy 107 (284)
+..- ||-++=+||+|+|+|..+..++...|
T Consensus 61 Gi~viTQATvSRDIkELglvKv~~~~G~~~Y 91 (180)
T 3v4g_A 61 GFENINQSKVSRMLTKFGAVRTRNAKMEMVY 91 (180)
T ss_dssp TCTTCCHHHHHHHHHHTTCEEEECTTSCEEE
T ss_pred CCcccCHHHHHHHHHHcCCEEeeCCCCCEEE
Confidence 4466 89999999999999999987777777
No 22
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.20 E-value=51 Score=25.06 Aligned_cols=36 Identities=33% Similarity=0.421 Sum_probs=25.9
Q ss_pred CHHHHHHHHHhhhcCeeeEeeCCCcceecchhhHHhh
Q 023328 80 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNL 116 (284)
Q Consensus 80 t~~q~~~L~~l~~~GLvy~~~~~~~~fy~pT~La~~L 116 (284)
..+--..|+.|.+.|||..+.. ...+|..|.....+
T Consensus 57 ~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l 92 (111)
T 3df8_A 57 STILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNV 92 (111)
T ss_dssp HHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHH
Confidence 3556678999999999987765 56666577765443
No 23
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=23.78 E-value=1.3e+02 Score=23.16 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCceEEEE--eCHHH-HHHH---HHcCCCHHHHHHHHhhcCCccccccCCCCC-hhHHHHHHHHHHhc
Q 023328 162 LPNLIVGA--ITKES-LYNA---FENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESDL 222 (284)
Q Consensus 162 ~Pnlvvg~--iTReS-v~~A---l~~GITA~QIi~fL~~hAHp~m~~~~p~lP-~tV~dQIrLWe~E~ 222 (284)
-|-+|=|. ++|.. +-.| ...|.+.++++.++++.- | +-| +....|+..||.+.
T Consensus 86 ~~vlVHC~aG~~RSg~~~~ayl~~~~~~~~~~a~~~v~~~R-~-------i~pn~~f~~qL~~~e~~l 145 (151)
T 2e0t_A 86 GKILVHCAVGVSRSATLVLAYLMLYHHLTLVEAIKKVKDHR-G-------IIPNRGFLRQLLALDRRL 145 (151)
T ss_dssp CCEEEECSSSSHHHHHHHHHHHHHHSCCCHHHHHHHHHHTS-C-------SCCCHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHcC-C-------CCCCHHHHHHHHHHHHHH
Confidence 45555543 57887 5555 357999999999999753 4 333 57999999999763
No 24
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=23.58 E-value=65 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCcceecch
Q 023328 81 EIQRSMIKDFADLGLVKLQQGRKESWFIPT 110 (284)
Q Consensus 81 ~~q~~~L~~l~~~GLvy~~~~~~~~fy~pT 110 (284)
.+-..-|+.|.+.|||..++.....+|..+
T Consensus 51 ~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (98)
T 3jth_A 51 SALSQHLAWLRRDGLVTTRKEAQTVYYTLK 80 (98)
T ss_dssp HHHHHHHHHHHHTTSEEEECCTTCCEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 566778999999999988765556666333
No 25
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=23.25 E-value=96 Score=21.94 Aligned_cols=46 Identities=9% Similarity=0.255 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHcCeEe-eecCC-----CceEEEeccccHHHHHHHhhc
Q 023328 237 PSRDVFEAACDYARDRSGLL-WEDSK-----KMRLVVNAEIHMHMREFLRGQ 282 (284)
Q Consensus 237 ~s~~~fe~~~~yA~~~g~ll-w~~~~-----kr~~~V~~~~h~~v~~f~k~~ 282 (284)
.+.+..+.+.+.++..++-. |..+. .-.+.|+++..+.+++++++.
T Consensus 9 ~~~~q~~~L~~L~~~~~~df~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 9 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CSHHHHHHHHHHHTSCCTTCEESSCCCSTTCCEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCceEEEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHC
Confidence 45666777777777677788 97653 346899999999999999864
No 26
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=22.72 E-value=52 Score=27.92 Aligned_cols=77 Identities=14% Similarity=0.260 Sum_probs=47.8
Q ss_pred HhcCCceEEEEeCHHHHHHHHHcCCCH-HHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhcCceeeccceeeccCC
Q 023328 159 EYQLPNLIVGAITKESLYNAFENGITA-EQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFP 237 (284)
Q Consensus 159 ~~r~Pnlvvg~iTReSv~~Al~~GITA-~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~~R~~~~~g~Ly~~f~ 237 (284)
.+.+|.+.+|-|=|+.+ ++|-.- .++-.|+.+ ...+|..++.++-. +|+.-.+|++++.|+
T Consensus 23 ~~g~~~istGdllR~~i----~~~t~lg~~~~~~~~~---------G~lvpd~iv~~lv~-----~~l~~~~~~ilDGfP 84 (206)
T 3sr0_A 23 EKGFVHISTGDILREAV----QKGTPLGKKAKEYMER---------GELVPDDLIIALIE-----EVFPKHGNVIFDGFP 84 (206)
T ss_dssp HHCCEEEEHHHHHHHHH----HHTCHHHHHHHHHHHH---------TCCCCHHHHHHHHH-----HHCCSSSCEEEESCC
T ss_pred HHCCeEEcHHHHHHHHH----HhcChhhhhHHHHHhc---------CCcCCHHHHHHHHH-----HhhccCCceEecCCc
Confidence 46788888886655544 444322 233344443 34899998876632 344556899999998
Q ss_pred CH-HHHHHHHHHHHHcC
Q 023328 238 SR-DVFEAACDYARDRS 253 (284)
Q Consensus 238 s~-~~fe~~~~yA~~~g 253 (284)
-. +..+.+-+...+.|
T Consensus 85 Rt~~Qa~~l~~~l~~~~ 101 (206)
T 3sr0_A 85 RTVKQAEALDEMLEKKG 101 (206)
T ss_dssp CSHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHhhHHHhc
Confidence 75 44555555555555
No 27
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.94 E-value=76 Score=22.47 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCcceecch
Q 023328 81 EIQRSMIKDFADLGLVKLQQGRKESWFIPT 110 (284)
Q Consensus 81 ~~q~~~L~~l~~~GLvy~~~~~~~~fy~pT 110 (284)
.+-...|+.|.+.|+|...+.....+|..|
T Consensus 53 ~tvs~~l~~L~~~glv~~~~~~r~~~y~l~ 82 (99)
T 3cuo_A 53 SATSQHLARMRDEGLIDSQRDAQRILYSIK 82 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEEECSSCEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEecCCEEEEEEC
Confidence 567789999999999987664445555343
No 28
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=21.27 E-value=1e+02 Score=24.65 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=36.7
Q ss_pred CceEEEE--eCHH-HHHHH---HHcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHhc
Q 023328 163 PNLIVGA--ITKE-SLYNA---FENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESDL 222 (284)
Q Consensus 163 Pnlvvg~--iTRe-Sv~~A---l~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E~ 222 (284)
+-+|-|. ++|. +|--| ...|.+.++.+.++++. .|.+ ..-+....|++.||.+.
T Consensus 89 ~VlVHC~~G~sRS~~vv~ayLm~~~~~s~~~A~~~v~~~-Rp~i-----~pn~~f~~qL~~~e~~L 148 (161)
T 3emu_A 89 GVLIISGTGVNKAPAIVIAFLMYYQRLSFINAFNKVQGL-YPLI-----DIESGFILQLKLFEKKL 148 (161)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHTTCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHHH
Confidence 3344443 6785 34434 26899999999999965 4432 22457899999999763
No 29
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=21.27 E-value=10 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=27.1
Q ss_pred hhccccccccccccCCCCC--HHHHHHHHHhhhcCee
Q 023328 62 SLKFLCQGILEAYNLNTLS--EIQRSMIKDFADLGLV 96 (284)
Q Consensus 62 ~L~~~~~~lG~~Y~~~~Lt--~~q~~~L~~l~~~GLv 96 (284)
.|+.+. .|+.+-+..++ +....++++|.++||+
T Consensus 3 ~L~~l~--~G~~~~I~~i~~~~~~~~~~~rL~~lGl~ 37 (85)
T 3mhx_A 3 TLSELP--LHTSAVVESVQDLHANDAIARRLRELGFV 37 (85)
T ss_dssp BGGGCC--TTEEEEEEEECCSSSSCHHHHHHHHTTCC
T ss_pred CHHHCC--CCCEEEEEEEECCCCCHHHHHHHHHCCCC
Confidence 477788 89988888775 5667899999999995
No 30
>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}
Probab=21.02 E-value=1e+02 Score=23.81 Aligned_cols=46 Identities=9% Similarity=0.231 Sum_probs=32.1
Q ss_pred eCHHH-HHHHH---HcCCCHHHHHHHHhhcCCccccccCCCCChhHHHHHHHHHHh
Q 023328 170 ITKES-LYNAF---ENGITAEQIISFLQQNAHPRVADRIPSVPENVCDQIRLWESD 221 (284)
Q Consensus 170 iTReS-v~~Al---~~GITA~QIi~fL~~hAHp~m~~~~p~lP~tV~dQIrLWe~E 221 (284)
++|.. +--|. ..|.+.++.+.++++. +|.+ ..-+....|+..||..
T Consensus 92 ~~RS~~~v~ayLm~~~~~~~~~A~~~v~~~-R~~~-----~pn~~f~~qL~~~e~~ 141 (145)
T 2nt2_A 92 VSRSASTVIAYAMKEYGWNLDRAYDYVKER-RTVT-----KPNPSFMRQLEEYQGI 141 (145)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHH-CTTC-----CCCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCHHHHHHHHHHH-CCCc-----CCCHHHHHHHHHHHHH
Confidence 58885 33332 4799999999999975 3321 1234689999999975
No 31
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=20.86 E-value=77 Score=24.11 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCcceecchh
Q 023328 81 EIQRSMIKDFADLGLVKLQQGRKESWFIPTK 111 (284)
Q Consensus 81 ~~q~~~L~~l~~~GLvy~~~~~~~~fy~pT~ 111 (284)
.+-...|+.|.+.|||..++.....+|.+|+
T Consensus 49 stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~ 79 (118)
T 2jsc_A 49 SNVSNHLSCLRGCGLVVATYEGRQVRYALAD 79 (118)
T ss_dssp HHHHHHHHHHTTTTSEEEEECSSSEEEEESS
T ss_pred HHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 5667789999999999877655556665664
No 32
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=20.77 E-value=72 Score=28.20 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=80.4
Q ss_pred HHHHHHHhhhcCeeeEeeC-CCcceecchhhHHhhhcCCCcccccCcceEEEeeCceEEEecCChhHHHHHHHHHhhHhc
Q 023328 83 QRSMIKDFADLGLVKLQQG-RKESWFIPTKLATNLSMSLTDSSARKEGFVVVETNFRMYAYSTSKLHCEILRLFSKIEYQ 161 (284)
Q Consensus 83 q~~~L~~l~~~GLvy~~~~-~~~~fy~pT~La~~L~~~~~~~~~~~~g~IIvETNFrvYAYT~S~lqiaiL~lF~~l~~r 161 (284)
...+++.|.+.|+|-.-+. +... ..++|-.|-. .|.-.||--+| +|-.. ..+.++..+
T Consensus 24 m~~~~~~l~~~~vv~Vir~~~~~~---a~~~a~al~~---------gGi~~iEvt~~------t~~a~---e~I~~l~~~ 82 (232)
T 4e38_A 24 MSTINNQLKALKVIPVIAIDNAED---IIPLGKVLAE---------NGLPAAEITFR------SDAAV---EAIRLLRQA 82 (232)
T ss_dssp HHHHHHHHHHHCEEEEECCSSGGG---HHHHHHHHHH---------TTCCEEEEETT------STTHH---HHHHHHHHH
T ss_pred HHHHHHHHHhCCEEEEEEcCCHHH---HHHHHHHHHH---------CCCCEEEEeCC------CCCHH---HHHHHHHHh
Confidence 3458889999999855432 2222 3344444433 25567776555 33333 445556677
Q ss_pred CCceEEE---EeCHHHHHHHHHcCC-------CHHHHHHHHhhcCCccccccCCCCCh--hHHHHHHHHHHhcCceeecc
Q 023328 162 LPNLIVG---AITKESLYNAFENGI-------TAEQIISFLQQNAHPRVADRIPSVPE--NVCDQIRLWESDLNRVEMTP 229 (284)
Q Consensus 162 ~Pnlvvg---~iTReSv~~Al~~GI-------TA~QIi~fL~~hAHp~m~~~~p~lP~--tV~dQIrLWe~E~~R~~~~~ 229 (284)
+|++++| ++|.+.++.|++.|- +-.+++.+.+.+--| .+|- |..+=.+-|+.--+-+++++
T Consensus 83 ~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi~-------~ipGv~TptEi~~A~~~Gad~vK~FP 155 (232)
T 4e38_A 83 QPEMLIGAGTILNGEQALAAKEAGATFVVSPGFNPNTVRACQEIGID-------IVPGVNNPSTVEAALEMGLTTLKFFP 155 (232)
T ss_dssp CTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTCE-------EECEECSHHHHHHHHHTTCCEEEECS
T ss_pred CCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCC-------EEcCCCCHHHHHHHHHcCCCEEEECc
Confidence 8999999 899999999999984 345677776665333 4443 77777888998889898866
Q ss_pred c
Q 023328 230 A 230 (284)
Q Consensus 230 g 230 (284)
+
T Consensus 156 a 156 (232)
T 4e38_A 156 A 156 (232)
T ss_dssp T
T ss_pred C
Confidence 4
No 33
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=20.55 E-value=75 Score=27.86 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.6
Q ss_pred HHHHHHHhhHhcC-----CceEEEEeCHHHHHHHHHcCC
Q 023328 150 EILRLFSKIEYQL-----PNLIVGAITKESLYNAFENGI 183 (284)
Q Consensus 150 aiL~lF~~l~~r~-----Pnlvvg~iTReSv~~Al~~GI 183 (284)
.+..+|..+--|- -+-.||+|||.-+.+|+..-.
T Consensus 210 ~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~~ 248 (250)
T 2d4z_A 210 KTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGSY 248 (250)
T ss_dssp HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC--
T ss_pred HHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence 5678888877543 356899999999999998544
No 34
>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}
Probab=20.38 E-value=1.8e+02 Score=22.41 Aligned_cols=53 Identities=17% Similarity=0.281 Sum_probs=36.5
Q ss_pred CCceEEEE--eCHHHHH-HH-H--HcCCCHHHHHHHHhhcCCccccccCCCCC-hhHHHHHHHHHHh
Q 023328 162 LPNLIVGA--ITKESLY-NA-F--ENGITAEQIISFLQQNAHPRVADRIPSVP-ENVCDQIRLWESD 221 (284)
Q Consensus 162 ~Pnlvvg~--iTReSv~-~A-l--~~GITA~QIi~fL~~hAHp~m~~~~p~lP-~tV~dQIrLWe~E 221 (284)
-|-+|=|. ++|...- -| + ..|++.++++.++++. +|. +.| +....|+..||..
T Consensus 91 ~~vlvHC~aG~~RS~~~~~ayl~~~~~~~~~~a~~~v~~~-R~~------~~pn~~f~~qL~~~e~~ 150 (154)
T 2r0b_A 91 GKVLVHGNAGISRSAAFVIAYIMETFGMKYRDAFAYVQER-RFC------INPNAGFVHQLQEYEAI 150 (154)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHTCCHHHHHHHHHHH-STT------CCCCHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCChHHHHHHHHHHHHcCCCHHHHHHHHHHH-CCc------cCCCHHHHHHHHHHHHH
Confidence 34455443 5898853 33 2 4799999999999875 342 233 4799999999964
No 35
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=20.15 E-value=47 Score=28.20 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhcCeeeEeeCCCcc-ee
Q 023328 81 EIQRSMIKDFADLGLVKLQQGRKES-WF 107 (284)
Q Consensus 81 ~~q~~~L~~l~~~GLvy~~~~~~~~-fy 107 (284)
=||-++=+||+|+|+|..+..++.. .|
T Consensus 51 vTQATlSRDikEL~lvKv~~~~G~~~~Y 78 (170)
T 3lap_A 51 VTQATLSRDLEELGAVKLRGADGGTGIY 78 (170)
T ss_dssp CCHHHHHHHHHHHTCEEECCTTCTTCEE
T ss_pred cCchhHHHHHHHcCcEEeecCCCCEEEE
Confidence 4788899999999999999777766 66
Done!