BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023332
(284 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 134 bits (338), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 74/193 (38%), Positives = 126/193 (65%), Gaps = 4/193 (2%)
Query: 91 LIIVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
L+IV+SGPSGVGK + K++ E S ++ ++ T+R MR GE +G DY+F +++ F +
Sbjct: 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL 66
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I ++ +EYA G+Y G P + +++ M +G+D+ L ++++GA+ +R+ D A+F+FL
Sbjct: 67 IKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFLA 125
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S L ERLV R TES E++ RI AR+E++ + +DYVVVN E +++A ++ I
Sbjct: 126 PPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDE--VELAKNRIQCI 183
Query: 270 IDAEKAKVQQRSA 282
++AE K ++ A
Sbjct: 184 VEAEHLKRERVEA 196
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Query: 71 LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP 127
+ S+G D+ P P ++V+SGPS VGK +++ LRE +L F V+AT+R
Sbjct: 1 MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRA 60
Query: 128 MRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIIL 185
RPGE +G DY+F+ F +ID+ ELLE+A ++G G + +R A G +++
Sbjct: 61 PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 186 RVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV 245
VD+ GA+ +++ + + AV VFL S L RL+ R TE+ + + R+ TAR E+
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQ 179
Query: 246 KNFDYVVVN 254
+FD VVVN
Sbjct: 180 GDFDKVVVN 188
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 3/188 (1%)
Query: 91 LIIVISGPSGVGKDALIKKLRE-SRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
+I+V+S PSG GK + KL E ++++ V+ T+R R GE+ GKDYYFV +EEFL +
Sbjct: 28 VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
E++E+A V+G++ G+P+K + + + KG +L +D QGA ++ + V +F+M
Sbjct: 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S L RL R+ + E + R+ A EI H + +DYV+VN + ++ + +I
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205
Query: 270 IDAEKAKV 277
+ AE+ K
Sbjct: 206 LRAEQMKT 213
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 6/186 (3%)
Query: 74 SLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP 130
S+G D+ P P ++V+SGPS VGK +++ LRE +L F V+AT+R RP
Sbjct: 1 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60
Query: 131 GEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIILRVD 188
GE +G DY+F+ F +ID+ ELLE+A ++G G + +R A G +++ VD
Sbjct: 61 GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120
Query: 189 IQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248
+ GA+ +++ + + AV VFL S L RL+ R TE+ + + R+ TAR E+ +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179
Query: 249 DYVVVN 254
D VVVN
Sbjct: 180 DKVVVN 185
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/183 (34%), Positives = 108/183 (59%), Gaps = 3/183 (1%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+ +IS PSG GK +L++ L ++ ++ ++ T+RP RPG++ G DY+F+ + F +
Sbjct: 9 LFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAXVK 68
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
+ LE+A +Y + G K + + G D++L +D QGA+ +R + A+ +F++
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFP-PALSIFILPP 127
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271
S AL ERL++R+ + + R+A AREE H K FDY+VVN D AV+ + II
Sbjct: 128 SIEALRERLIKRRQDDTAIIEQRLALAREEXAHYKEFDYLVVN--DNFDQAVQNLIHIIS 185
Query: 272 AEK 274
AE+
Sbjct: 186 AER 188
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
IVISGPSG GK L+KKL E DS F V++T+R R GE NGKDY FVS +EF +MI
Sbjct: 5 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 64
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
NE +E+A G+Y G +++ G IL +D+QG ++++ + +A F+F+
Sbjct: 65 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 124
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKN--FDYVVVNAEGKLDVAVKLVESI 269
S L +RL R TE+ E + R++ A+ E+ + + D V+VN + LD A K ++
Sbjct: 125 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 182
Query: 270 IDAEK 274
I AEK
Sbjct: 183 IFAEK 187
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 121 bits (304), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 110/185 (59%), Gaps = 5/185 (2%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
IVISGPSG GK L+KKL E DS F V++T+R R GE NGKDY FVS +EF +MI
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
NE +E+A G+Y G +++ G IL +D+QG ++++ + +A F+F+
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKN--FDYVVVNAEGKLDVAVKLVESI 269
S L +RL R TE+ E + R++ A+ E+ + + D V+VN + LD A K ++
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181
Query: 270 IDAEK 274
I AEK
Sbjct: 182 IFAEK 186
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 108/189 (57%), Gaps = 6/189 (3%)
Query: 71 LEASLGHAFDSNPVC---PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP 127
+ S+G D+ P P ++V+SGPS VGK +++ LRE +L F V+AT+R
Sbjct: 1 MAVSVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRC 60
Query: 128 MRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIIL 185
RPGE +G DY+F+ F +ID+ ELLE+A ++G G + +R A G +++
Sbjct: 61 PRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLI 120
Query: 186 RVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV 245
VD+ GA+ +++ + + AV VFL S L RL+ R E+ + + R+ TAR E+
Sbjct: 121 EVDLAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGCETADVIQRRLDTARIELAAQ 179
Query: 246 KNFDYVVVN 254
+FD VVVN
Sbjct: 180 GDFDKVVVN 188
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 75/185 (40%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
IVISGPSG GK L+KKL E DS F V +T+R R GE NGKDY FVS +EF +MI
Sbjct: 20 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 79
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
NE +E+A G+Y G +++ G IL +D+QG ++++ + +A F+F+
Sbjct: 80 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 139
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKN--FDYVVVNAEGKLDVAVKLVESI 269
S L +RL R TE+ E + R++ A+ E+ + + D V+VN + LD A K ++
Sbjct: 140 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 197
Query: 270 IDAEK 274
I AEK
Sbjct: 198 IFAEK 202
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 117/191 (61%), Gaps = 5/191 (2%)
Query: 92 IIVISGPSGVGKDALIKKLRESRD--SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
+ ++S PSG GK +LI+ L +++ + V+ T+R RPGE +G+ Y+FV+ +EF M
Sbjct: 6 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEM 65
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I ++ LE+A V+G+Y G ++ I + +A G D+ L +D QGAQ +R+ + A +F++
Sbjct: 66 ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKM-PHARSIFIL 124
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S+ L RL R +S E + R+A A E+ H +DY++VN + D A+ +++I
Sbjct: 125 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKTI 182
Query: 270 IDAEKAKVQQR 280
I AE+ ++ ++
Sbjct: 183 IRAERLRMSRQ 193
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/185 (35%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 92 IIVISGPSGVGKDALIKKLRESRD--SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
+ ++S PSG GK +LI+ L +++ + V+ T+R RPGE +G+ Y+FV+ +EF
Sbjct: 18 LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEX 77
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I ++ LE+A V+G+Y G ++ I + +A G D+ L +D QGAQ +R+ A +F++
Sbjct: 78 ISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKX-PHARSIFIL 136
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S+ L RL R +S E + R A A E H +DY++VN + D A+ +++I
Sbjct: 137 PPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDD--FDTALTDLKTI 194
Query: 270 IDAEK 274
I AE+
Sbjct: 195 IRAER 199
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 111 bits (277), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESRDSL-RFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
P +V+SGPSG GK L+KKL + S+ F V+ T+R RPGEE+GKDYYFV++E
Sbjct: 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 62
Query: 148 TMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVF 207
I + +E+A G+ G K+ +R A +L VD+QG +++++ +++F
Sbjct: 63 RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-DLCPIYIF 121
Query: 208 LMAESETALVERLVERKTESREELLVRIATAREEIKHVKN---FDYVVVNAEGKLDVAVK 264
+ S L +RL R TE+ E L R+A AR +++ K FD V++N + LD A
Sbjct: 122 VQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYA 179
Query: 265 LVESIIDAEKAKVQ 278
++ + E K Q
Sbjct: 180 TLKQALSEEIKKAQ 193
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 97/161 (60%), Gaps = 2/161 (1%)
Query: 91 LIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
L+IV+SGPSGVGK + + + ++ S + ++ T+R R GE++G DYYF S+E F
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I + LEYA G+Y G P + + E +A G DI L +++QGA +R+ + +F+FL
Sbjct: 69 IKDGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPE-GIFIFLT 127
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDY 250
+ L R++ R TES E + R TA++EI+ ++DY
Sbjct: 128 PPDLSELKNRIIGRGTESXEVVEERXETAKKEIEXXASYDY 168
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 4/168 (2%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+VI GPSGVGK LIKKL E + F V+ T+R R E+ G DYYF+ K F +
Sbjct: 26 LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLG-DSAVFVFLMA 210
+ LEY ++ G K + + + + ++I G + L++ +A+++F+
Sbjct: 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKP 145
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIK--HVKNFDYVVVNAE 256
S L+ RL+ R TE++E++ R+ E+ ++ NF+ ++N +
Sbjct: 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD 193
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 8/174 (4%)
Query: 87 PPNPLIIVISGPSGVGKDALIKK-LRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEE 145
PP +V+ GPSGVGK LIKK L E RF ++ T+R R E NG DYYFV K++
Sbjct: 13 PP----LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDD 68
Query: 146 FLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLG-DSAV 204
F + + + LE+ ++ G K + + +G + +I G + L+ +
Sbjct: 69 FERKLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGI 128
Query: 205 FVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK--NFDYVVVNAE 256
++F+ S L+ RL R TE EE+ R E F+Y +VN +
Sbjct: 129 YIFVKPPSIDILLGRLKNRNTEKPEEINKRXQELTREXDEADKVGFNYFIVNDD 182
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 21/185 (11%)
Query: 93 IVISGPSGVG----KDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
+V+ G GVG K+ LI K D + + T+RP + EENGK+YYFVS ++ +
Sbjct: 8 LVLLGAHGVGRRHIKNTLITK---HPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 64
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVF-VF 207
I NE LEY G + IR+ +G IL V+ Q + LR + A F VF
Sbjct: 65 DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLR--TAEFAPFVVF 122
Query: 208 LMAESET-ALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266
+ A + T L E ++ + ++L R + FD ++N E +D ++ +
Sbjct: 123 IAAPTITPGLNEDESLQRLQKESDILQR--------TYAHYFDLTIINNE--IDETIRHL 172
Query: 267 ESIID 271
E ++
Sbjct: 173 EEAVE 177
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFV--VTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
+V+ G SGVG+ + IK S++ +FV V T+RP R EE+GK+Y+F+S EE I
Sbjct: 22 LVLIGASGVGR-SHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNI 80
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMA 210
NE LE+ G+ G + + + + IL ++ Q + +R + + F+ +A
Sbjct: 81 SANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVR--TAELSPFIVFIA 138
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270
++ +TE+ ++L R + H FD +VN +D +K ++
Sbjct: 139 PTDQGT-------QTEALQQLQKDSEAIRSQYAHY--FDLSLVN--NGVDETLKKLQEAF 187
Query: 271 D 271
D
Sbjct: 188 D 188
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
++I GP KD + L E D V T+RP R E +G+DY+FVS E +
Sbjct: 103 VIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDI 159
Query: 152 KNELLEYALVYGD-YKGIPKKQIREYMAKGYDIILRVDIQGAQTLR-RVLGDSAVFVFLM 209
+N L A Y D G +RE KG IL D+ G R +V V VF+
Sbjct: 160 QNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCIL--DVSGNAIKRLQVAQLYPVAVFIK 217
Query: 210 AESETALVE---RLVERKTESREELLVRI 235
+S +++E R+ E + + E +++
Sbjct: 218 PKSVDSVMEMNRRMTEEQAKKTYERAIKM 246
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 93 IVISGPSGVGKD-ALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMI 150
I+I GP+ KD A L E D V T+RP R E +G+DY+FV S+E+ I
Sbjct: 114 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 170
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRV 198
++ +E G + +RE +G IL V A +RR+
Sbjct: 171 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDV---SANAVRRL 215
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 93 IVISGPSGVGKD-ALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMI 150
I+I GP+ KD A L E D V T+RP R E +G+DY+FV S+E+ I
Sbjct: 108 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 164
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRV 198
++ +E G + +RE +G IL V A +RR+
Sbjct: 165 QAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDV---SANAVRRL 209
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 8/108 (7%)
Query: 93 IVISGPSGVGKD-ALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMI 150
I+I GP+ KD A L E D V T+RP R E +G+DY+FV S+E+ I
Sbjct: 534 IIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDI 590
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRV 198
++ +E G + +RE +G IL V A +RR+
Sbjct: 591 RAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVS---ANAVRRL 635
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMI 150
++I GP KD + L E D V T+RP R E +G+DY+FV S+E+ I
Sbjct: 109 VIILGPM---KDRVNDDLISEFPDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDI 165
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGD-SAVFVFLM 209
+++ +E G + +R KG IL D+ G R + + +F+
Sbjct: 166 QEHKFIEAGQYNNHLYGTSVQSVRAVAEKGKHCIL--DVSGNAIKRLQIAQLYPISIFIK 223
Query: 210 AESETALVE---RLVERKTESREELLVRI 235
+S ++E RL + + E VR+
Sbjct: 224 PKSMENIMEMNKRLTDEQARKTFERAVRL 252
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
++ISG SG GK KK+ ++F+ +S GE +SK ++D
Sbjct: 96 CVIISGESGAGKTEASKKI------MQFLTFVSSNQSPNGER-------ISK----MLLD 138
Query: 152 KNELLEYALVYGDYKGI---PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
N LLE +G+ K + + +YM ++ + G + +L S V
Sbjct: 139 SNPLLE---AFGNAKTLRNDNSSRFGKYMEMQFNAV--GSPIGGKITNYLLEKSRVVGRT 193
Query: 209 MAESETALVERLVERKTESR-EEL-LVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266
E + ++++ ++S+ +EL L A A E +K FD ++ G+ + VK +
Sbjct: 194 QGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAM 253
Query: 267 ESI 269
E++
Sbjct: 254 ETL 256
>pdb|1GL9|B Chain B, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
pdb|1GL9|C Chain C, Archaeoglobus Fulgidus Reverse Gyrase Complexed With Adpnp
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVE 267
++T ++ +++R ESRE R +I V++FD V+ + E + D+ +KLVE
Sbjct: 716 AQTLVLGWIIDRFQESRE---------RRKIAIVRDFDLVLEHDEEEFDLTIKLVE 762
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 27/183 (14%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
++ISG SG GK KK+ ++F+ +S GE +SK ++D
Sbjct: 96 CVIISGESGAGKTEASKKI------MQFLTFVSSNQSPNGER-------ISK----MLLD 138
Query: 152 KNELLEYALVYGDYKGI---PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
N LLE +G+ K + + +YM ++ + G + +L S V
Sbjct: 139 SNPLLE---AFGNAKTLRNDNSSRFGKYMEMQFNAV--GSPIGGKITNYLLEKSRVVGRT 193
Query: 209 MAESETALVERLVERKTESR-EEL-LVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266
E + ++++ ++S+ +EL L A A E +K FD ++ G+ + VK +
Sbjct: 194 QGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAM 253
Query: 267 ESI 269
E++
Sbjct: 254 ETL 256
>pdb|1GKU|B Chain B, Reverse Gyrase From Archaeoglobus Fulgidus
Length = 1054
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 9/56 (16%)
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVE 267
++T ++ +++R ESRE R +I V++FD V+ + E + D+ +KLVE
Sbjct: 716 AQTLVLGWIIDRFQESRE---------RRKIAIVRDFDLVLEHDEEEFDLTIKLVE 762
>pdb|4E22|A Chain A, Structure Of Cytidine Monophosphate Kinase From Yersinia
Pseudotuberculosis
Length = 252
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 92 IIVISGPSGVGKDALIKKLRES 113
+I + GPSG GK L K L ES
Sbjct: 29 VITVDGPSGAGKGTLCKALAES 50
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 88 PNPLIIVISGPSGVGKDALIKKL 110
P +++ + GPSG GK ++ K+L
Sbjct: 2 PGSMVVAVDGPSGTGKSSVAKEL 24
>pdb|3CZP|A Chain A, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
pdb|3CZP|B Chain B, Crystal Structure Of Putative Polyphosphate Kinase 2 From
Pseudomonas Aeruginosa Pa01
Length = 500
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP 127
P+II+I+G G GK +K L E D V + RP
Sbjct: 43 PVIILINGIEGAGKGETVKLLNEWXDPRLIEVQSFLRP 80
>pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|B Chain B, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|C Chain C, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|D Chain D, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|E Chain E, Tyrosine Aminotransferase From E. Coli
pdb|3TAT|F Chain F, Tyrosine Aminotransferase From E. Coli
Length = 397
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 191 GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDY 250
GAQ + VL D A+ +AE VE + R R+EL+ ++T E +NFDY
Sbjct: 291 GAQVVAAVLNDEALKASWLAE-----VEEMRTRILAMRQELVKVLSTEMPE----RNFDY 341
Query: 251 VV 252
++
Sbjct: 342 LL 343
>pdb|3BJS|A Chain A, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
pdb|3BJS|B Chain B, Crystal Structure Of A Member Of Enolase Superfamily From
Polaromonas Sp. Js666
Length = 428
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 171 KQIREYMAKGYDII-------LRVDIQGAQTLRRVLGDSAVFVFLMAESETA 215
++ +EY+A+GY + RVDI+ + +R+VLGD V ++ ++ TA
Sbjct: 191 EEAQEYIARGYKALKLRIGDAARVDIERVRHVRKVLGDE---VDILTDANTA 239
>pdb|4F52|E Chain E, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|F Chain F, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 596
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 202 SAVFVFLMAESETALVERLVERKTESREE 230
SA+F F + ES A VE L+E KT+S E
Sbjct: 562 SALFTFDLIESVLARVEELIEIKTKSTSE 590
>pdb|2BDT|A Chain A, Crystal Structure Of The Putative Gluconate Kinase From
Bacillus Halodurans, Northeast Structural Genomics
Target Bhr61
Length = 189
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFV 120
+ +I+GP+GVGK K+L D+ ++
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYI 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,212,634
Number of Sequences: 62578
Number of extensions: 278997
Number of successful extensions: 952
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 44
length of query: 284
length of database: 14,973,337
effective HSP length: 98
effective length of query: 186
effective length of database: 8,840,693
effective search space: 1644368898
effective search space used: 1644368898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)