Query 023332
Match_columns 284
No_of_seqs 344 out of 2946
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:12:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0194 Gmk Guanylate kinase [ 100.0 6.8E-38 1.5E-42 252.9 21.4 184 89-276 3-186 (191)
2 PRK14737 gmk guanylate kinase; 100.0 7.5E-34 1.6E-38 236.2 19.8 182 89-272 3-184 (186)
3 smart00072 GuKc Guanylate kina 100.0 6.4E-30 1.4E-34 212.8 21.0 181 90-273 2-183 (184)
4 PRK14738 gmk guanylate kinase; 100.0 2.4E-29 5.2E-34 212.8 22.1 192 87-279 10-201 (206)
5 PF00625 Guanylate_kin: Guanyl 100.0 7.5E-30 1.6E-34 212.2 18.2 182 89-273 1-183 (183)
6 PLN02772 guanylate kinase 100.0 2E-28 4.3E-33 220.8 20.3 187 89-278 134-324 (398)
7 PRK00300 gmk guanylate kinase; 100.0 8.1E-27 1.8E-31 197.2 20.9 190 88-280 3-193 (205)
8 TIGR03263 guanyl_kin guanylate 100.0 1.5E-26 3.3E-31 191.6 20.0 179 90-271 1-179 (180)
9 KOG0707 Guanylate kinase [Nucl 99.9 1.2E-23 2.7E-28 175.3 15.6 190 90-281 37-230 (231)
10 PRK10078 ribose 1,5-bisphospho 99.9 1.2E-22 2.6E-27 169.3 19.5 180 90-278 2-182 (186)
11 COG3709 Uncharacterized compon 99.9 1.8E-21 3.9E-26 153.1 18.4 181 89-277 4-187 (192)
12 TIGR02322 phosphon_PhnN phosph 99.9 1.4E-20 3.1E-25 155.7 18.5 175 90-272 1-178 (179)
13 cd00071 GMPK Guanosine monopho 99.9 7.9E-21 1.7E-25 150.5 14.0 119 92-211 1-120 (137)
14 KOG0609 Calcium/calmodulin-dep 99.8 2E-19 4.3E-24 164.7 17.7 184 88-275 338-531 (542)
15 PRK08356 hypothetical protein; 99.8 1.4E-17 3E-22 139.7 18.6 178 90-273 5-193 (195)
16 cd00227 CPT Chloramphenicol (C 99.6 5.2E-15 1.1E-19 122.0 14.6 164 89-270 1-174 (175)
17 PRK00698 tmk thymidylate kinas 99.6 4.6E-14 9.9E-19 118.9 15.8 174 89-273 2-203 (205)
18 PRK06762 hypothetical protein; 99.6 4.8E-14 1E-18 115.1 15.3 152 90-271 2-163 (166)
19 PRK00081 coaE dephospho-CoA ki 99.6 1.6E-14 3.5E-19 121.1 12.7 174 91-272 3-193 (194)
20 PRK14731 coaE dephospho-CoA ki 99.6 1.8E-14 3.8E-19 122.1 12.3 180 89-274 4-204 (208)
21 PRK14733 coaE dephospho-CoA ki 99.6 3.3E-14 7.1E-19 119.5 13.4 183 88-275 4-201 (204)
22 PRK14732 coaE dephospho-CoA ki 99.6 2E-14 4.3E-19 120.5 11.0 178 92-276 1-194 (196)
23 PRK14730 coaE dephospho-CoA ki 99.6 2.1E-14 4.5E-19 120.4 11.1 174 91-271 2-193 (195)
24 TIGR01360 aden_kin_iso1 adenyl 99.6 7.3E-14 1.6E-18 116.0 14.2 171 90-272 3-187 (188)
25 PRK14734 coaE dephospho-CoA ki 99.5 4.3E-14 9.3E-19 119.0 10.7 181 91-277 2-199 (200)
26 PTZ00451 dephospho-CoA kinase; 99.5 2.1E-13 4.5E-18 117.6 13.2 181 91-274 2-209 (244)
27 PRK14527 adenylate kinase; Pro 99.5 4.1E-13 8.8E-18 112.3 14.7 168 87-270 3-190 (191)
28 PLN02422 dephospho-CoA kinase 99.5 1.6E-13 3.6E-18 117.2 12.5 178 91-274 2-196 (232)
29 PRK04040 adenylate kinase; Pro 99.5 1E-12 2.2E-17 109.5 15.6 166 90-270 2-187 (188)
30 TIGR01313 therm_gnt_kin carboh 99.5 1.4E-12 3.1E-17 106.0 15.3 156 93-271 1-162 (163)
31 PLN02200 adenylate kinase fami 99.5 2.4E-12 5.2E-17 110.9 16.7 174 86-275 39-227 (234)
32 cd01672 TMPK Thymidine monopho 99.5 1.9E-12 4E-17 108.2 15.2 170 91-271 1-199 (200)
33 TIGR01359 UMP_CMP_kin_fam UMP- 99.5 1.7E-12 3.6E-17 107.6 14.7 163 92-270 1-182 (183)
34 TIGR00152 dephospho-CoA kinase 99.5 2E-13 4.4E-18 113.8 9.0 171 92-267 1-187 (188)
35 PRK01184 hypothetical protein; 99.5 1.8E-12 4E-17 107.6 14.6 170 91-275 2-181 (184)
36 COG1102 Cmk Cytidylate kinase 99.5 3.2E-12 6.8E-17 101.3 14.6 164 91-276 1-176 (179)
37 PRK14531 adenylate kinase; Pro 99.5 3.2E-12 6.9E-17 106.2 15.2 164 91-270 3-182 (183)
38 COG0237 CoaE Dephospho-CoA kin 99.4 8.4E-13 1.8E-17 110.6 11.2 180 90-278 2-198 (201)
39 PRK05541 adenylylsulfate kinas 99.4 5.8E-13 1.3E-17 109.8 9.7 163 87-272 4-172 (176)
40 PRK09825 idnK D-gluconate kina 99.4 1.3E-11 2.7E-16 101.9 16.1 158 89-273 2-169 (176)
41 PRK13973 thymidylate kinase; P 99.4 1.7E-11 3.7E-16 104.2 17.3 175 89-274 2-208 (213)
42 TIGR01351 adk adenylate kinase 99.4 9E-12 2E-16 105.7 15.3 162 93-270 2-209 (210)
43 PRK14530 adenylate kinase; Pro 99.4 1.2E-11 2.6E-16 105.3 15.7 170 90-272 3-213 (215)
44 COG0125 Tmk Thymidylate kinase 99.4 5.7E-12 1.2E-16 106.1 13.3 175 89-274 2-205 (208)
45 PLN02924 thymidylate kinase 99.4 1.1E-11 2.3E-16 105.8 15.2 175 87-275 13-206 (220)
46 PF07931 CPT: Chloramphenicol 99.4 2.3E-12 5E-17 105.5 10.1 166 90-271 1-174 (174)
47 PRK14532 adenylate kinase; Pro 99.4 1E-11 2.3E-16 103.4 14.0 164 92-271 2-186 (188)
48 PRK00279 adk adenylate kinase; 99.4 1.7E-11 3.6E-16 104.4 15.2 165 92-272 2-214 (215)
49 cd02022 DPCK Dephospho-coenzym 99.4 2.8E-12 6E-17 106.2 10.1 160 92-259 1-177 (179)
50 PRK13808 adenylate kinase; Pro 99.4 1.5E-11 3.2E-16 110.1 15.3 171 92-275 2-196 (333)
51 PRK05480 uridine/cytidine kina 99.4 1.1E-11 2.4E-16 105.0 13.1 89 180-272 106-208 (209)
52 KOG3220 Similar to bacterial d 99.4 5.5E-12 1.2E-16 103.2 10.3 180 91-276 2-198 (225)
53 COG0645 Predicted kinase [Gene 99.4 7.2E-12 1.6E-16 100.4 10.8 119 90-226 1-127 (170)
54 PF01121 CoaE: Dephospho-CoA k 99.4 6.4E-13 1.4E-17 109.8 4.9 163 91-261 1-180 (180)
55 PRK12339 2-phosphoglycerate ki 99.4 1.2E-11 2.6E-16 103.7 12.6 181 89-271 2-196 (197)
56 PRK11545 gntK gluconate kinase 99.4 4E-11 8.6E-16 97.7 15.3 90 179-274 67-162 (163)
57 PRK13976 thymidylate kinase; P 99.3 2E-11 4.4E-16 103.3 13.4 177 91-277 1-206 (209)
58 PRK08233 hypothetical protein; 99.3 4.5E-11 9.8E-16 98.7 15.1 162 90-273 3-178 (182)
59 PRK14526 adenylate kinase; Pro 99.3 4.5E-11 9.8E-16 101.3 15.2 163 93-272 3-209 (211)
60 PRK13946 shikimate kinase; Pro 99.3 4.1E-11 8.8E-16 99.6 14.4 160 89-275 9-179 (184)
61 PRK13974 thymidylate kinase; P 99.3 9.3E-11 2E-15 99.6 16.9 175 89-275 2-209 (212)
62 PRK04182 cytidylate kinase; Pr 99.3 6.6E-11 1.4E-15 97.4 15.5 162 91-273 1-174 (180)
63 COG3842 PotA ABC-type spermidi 99.3 2.1E-13 4.5E-18 122.6 0.4 154 59-232 6-183 (352)
64 KOG3079 Uridylate kinase/adeny 99.3 3.1E-11 6.7E-16 97.7 12.8 171 87-272 5-193 (195)
65 PF13671 AAA_33: AAA domain; P 99.3 1E-11 2.3E-16 98.4 10.1 115 92-226 1-121 (143)
66 PRK07933 thymidylate kinase; V 99.3 1.4E-10 3E-15 98.6 17.1 169 91-270 1-211 (213)
67 PLN02674 adenylate kinase 99.3 3.9E-11 8.5E-16 103.4 13.8 164 90-270 31-243 (244)
68 TIGR03574 selen_PSTK L-seryl-t 99.3 3.7E-11 7.9E-16 104.6 13.7 158 92-272 1-169 (249)
69 PHA02530 pseT polynucleotide k 99.3 5.8E-11 1.2E-15 106.1 15.2 154 90-261 2-171 (300)
70 PLN02459 probable adenylate ki 99.3 6.9E-11 1.5E-15 102.4 15.0 173 89-277 28-256 (261)
71 PRK00131 aroK shikimate kinase 99.3 9.4E-11 2E-15 95.9 14.6 160 88-273 2-172 (175)
72 TIGR02173 cyt_kin_arch cytidyl 99.3 7.2E-11 1.6E-15 96.4 13.9 158 91-270 1-170 (171)
73 PRK02496 adk adenylate kinase; 99.3 1.2E-10 2.5E-15 96.7 14.8 163 91-270 2-182 (184)
74 PRK03839 putative kinase; Prov 99.3 9.5E-11 2.1E-15 96.9 14.2 151 92-276 2-157 (180)
75 TIGR00041 DTMP_kinase thymidyl 99.3 1.1E-10 2.3E-15 97.7 13.8 165 90-266 3-195 (195)
76 PRK00889 adenylylsulfate kinas 99.3 1.8E-11 3.8E-16 100.8 8.9 162 88-272 2-170 (175)
77 PRK14529 adenylate kinase; Pro 99.3 2.2E-10 4.8E-15 97.6 15.6 163 92-270 2-222 (223)
78 COG1936 Predicted nucleotide k 99.3 1.4E-10 3E-15 93.3 13.3 147 91-273 1-157 (180)
79 PRK13975 thymidylate kinase; P 99.3 3E-10 6.5E-15 95.1 16.1 167 90-274 2-192 (196)
80 PF02223 Thymidylate_kin: Thym 99.3 3.3E-11 7.2E-16 100.2 9.9 160 95-266 1-186 (186)
81 PRK08154 anaerobic benzoate ca 99.3 5.6E-10 1.2E-14 100.2 18.3 160 87-274 130-303 (309)
82 COG3265 GntK Gluconate kinase 99.2 1.9E-10 4.1E-15 90.0 12.6 150 96-272 1-159 (161)
83 COG3839 MalK ABC-type sugar tr 99.2 3.2E-12 6.9E-17 114.4 2.5 169 81-261 20-214 (338)
84 PRK06696 uridine kinase; Valid 99.2 5.3E-11 1.1E-15 101.9 9.7 165 88-256 20-211 (223)
85 PTZ00088 adenylate kinase 1; P 99.2 4.4E-10 9.5E-15 96.4 15.3 170 88-269 4-228 (229)
86 cd02030 NDUO42 NADH:Ubiquinone 99.2 6.1E-10 1.3E-14 95.1 16.0 67 201-268 142-217 (219)
87 PRK14528 adenylate kinase; Pro 99.2 4.3E-10 9.3E-15 93.6 14.3 163 91-269 2-185 (186)
88 PRK05057 aroK shikimate kinase 99.2 9E-10 2E-14 90.5 15.7 157 90-272 4-171 (172)
89 TIGR00235 udk uridine kinase. 99.2 4.1E-10 8.8E-15 95.3 13.9 181 85-272 1-204 (207)
90 PRK12338 hypothetical protein; 99.2 1.8E-10 3.8E-15 102.6 12.0 186 89-277 3-209 (319)
91 PRK03333 coaE dephospho-CoA ki 99.2 8.4E-11 1.8E-15 108.8 10.1 172 92-273 3-193 (395)
92 PRK03846 adenylylsulfate kinas 99.2 1.3E-10 2.8E-15 97.7 10.1 159 88-272 22-192 (198)
93 COG0563 Adk Adenylate kinase a 99.2 7.2E-10 1.6E-14 91.4 14.3 165 92-270 2-177 (178)
94 cd01428 ADK Adenylate kinase ( 99.2 3.6E-10 7.8E-15 94.3 12.1 153 93-261 2-193 (194)
95 PRK13948 shikimate kinase; Pro 99.2 2.3E-09 4.9E-14 88.8 16.4 158 88-273 8-176 (182)
96 PRK06217 hypothetical protein; 99.2 5.8E-09 1.2E-13 86.6 18.5 151 91-272 2-179 (183)
97 PRK13947 shikimate kinase; Pro 99.2 6.3E-10 1.4E-14 91.1 12.6 68 203-271 95-166 (171)
98 COG0703 AroK Shikimate kinase 99.1 1E-09 2.3E-14 88.9 13.0 156 91-274 3-170 (172)
99 PLN02842 nucleotide kinase 99.1 9E-10 1.9E-14 103.5 14.4 172 95-278 2-208 (505)
100 COG1116 TauB ABC-type nitrate/ 99.1 8.7E-11 1.9E-15 99.9 6.8 72 81-164 20-92 (248)
101 TIGR00455 apsK adenylylsulfate 99.1 4.1E-10 8.9E-15 93.5 10.8 158 88-269 16-183 (184)
102 COG0529 CysC Adenylylsulfate k 99.1 6.8E-10 1.5E-14 89.5 11.1 157 87-274 20-193 (197)
103 PRK12337 2-phosphoglycerate ki 99.1 1.3E-09 2.8E-14 101.0 14.2 187 88-278 253-467 (475)
104 PRK03731 aroL shikimate kinase 99.1 2.2E-09 4.7E-14 88.0 14.0 67 202-272 94-170 (171)
105 KOG3354 Gluconate kinase [Carb 99.1 2.5E-09 5.3E-14 84.3 13.2 162 90-272 12-188 (191)
106 PRK13949 shikimate kinase; Pro 99.1 3.1E-09 6.7E-14 87.1 14.6 66 203-269 95-168 (169)
107 PRK05537 bifunctional sulfate 99.1 7.2E-10 1.6E-14 106.8 12.3 161 87-272 389-562 (568)
108 PRK00091 miaA tRNA delta(2)-is 99.1 6.1E-10 1.3E-14 99.4 10.8 120 89-224 3-131 (307)
109 COG0283 Cmk Cytidylate kinase 99.1 2.2E-09 4.8E-14 89.4 12.5 178 90-271 4-218 (222)
110 cd02023 UMPK Uridine monophosp 99.1 2.1E-09 4.6E-14 90.2 12.6 84 179-267 98-192 (198)
111 PRK09270 nucleoside triphospha 99.0 2.4E-09 5.3E-14 92.0 11.9 73 180-256 137-222 (229)
112 PRK05416 glmZ(sRNA)-inactivati 99.0 1E-08 2.2E-13 90.7 16.0 143 88-272 4-160 (288)
113 TIGR01663 PNK-3'Pase polynucle 99.0 2.3E-09 5E-14 101.8 12.5 99 87-225 366-470 (526)
114 cd02021 GntK Gluconate kinase 99.0 7.4E-09 1.6E-13 82.9 13.5 115 92-226 1-121 (150)
115 PRK04220 2-phosphoglycerate ki 99.0 3.9E-09 8.5E-14 93.2 12.1 185 88-274 90-292 (301)
116 PF08433 KTI12: Chromatin asso 99.0 5.7E-09 1.2E-13 91.6 12.7 157 92-271 3-170 (270)
117 PRK06547 hypothetical protein; 99.0 4.5E-09 9.8E-14 86.3 11.1 151 88-252 13-170 (172)
118 COG2019 AdkA Archaeal adenylat 99.0 1.1E-08 2.3E-13 81.8 12.5 167 90-272 4-188 (189)
119 PTZ00301 uridine kinase; Provi 99.0 7.1E-09 1.5E-13 87.8 12.4 88 179-271 106-204 (210)
120 TIGR00017 cmk cytidylate kinas 99.0 1.5E-08 3.3E-13 86.3 14.2 86 179-269 119-216 (217)
121 PRK07667 uridine kinase; Provi 99.0 3.2E-09 7E-14 88.9 9.1 70 179-252 119-192 (193)
122 PRK13477 bifunctional pantoate 99.0 1.4E-08 3E-13 96.2 14.2 89 179-272 402-503 (512)
123 cd01673 dNK Deoxyribonucleosid 99.0 1.2E-08 2.7E-13 85.2 12.5 56 201-257 124-186 (193)
124 COG1125 OpuBA ABC-type proline 99.0 1.9E-09 4.1E-14 91.8 7.5 71 82-164 19-95 (309)
125 PRK00625 shikimate kinase; Pro 99.0 1.9E-08 4.1E-13 82.7 13.1 155 92-270 2-171 (173)
126 cd00464 SK Shikimate kinase (S 98.9 1.1E-08 2.5E-13 81.9 11.2 23 93-115 2-24 (154)
127 PF01583 APS_kinase: Adenylyls 98.9 4.1E-09 8.8E-14 84.6 8.0 112 89-220 1-117 (156)
128 COG4639 Predicted kinase [Gene 98.9 4E-08 8.6E-13 77.7 13.0 65 170-235 59-129 (168)
129 COG4175 ProV ABC-type proline/ 98.9 5.6E-09 1.2E-13 91.5 9.0 71 82-164 46-126 (386)
130 PRK05506 bifunctional sulfate 98.9 6.1E-09 1.3E-13 102.2 10.0 160 88-272 458-628 (632)
131 PRK08118 topology modulation p 98.9 1.3E-08 2.8E-13 83.2 10.4 97 92-223 3-99 (167)
132 COG4088 Predicted nucleotide k 98.9 1.4E-08 2.9E-13 84.0 10.2 60 180-241 74-140 (261)
133 PLN02199 shikimate kinase 98.9 1.1E-07 2.3E-12 83.7 16.4 160 89-275 101-291 (303)
134 cd02020 CMPK Cytidine monophos 98.9 2E-08 4.4E-13 79.7 11.0 118 92-238 1-123 (147)
135 KOG3347 Predicted nucleotide k 98.9 1.2E-07 2.5E-12 74.5 14.3 156 91-276 8-170 (176)
136 COG1127 Ttg2A ABC-type transpo 98.9 2E-09 4.2E-14 91.0 4.5 90 57-164 7-105 (263)
137 PRK07261 topology modulation p 98.9 2.5E-08 5.4E-13 81.9 10.9 96 92-223 2-99 (171)
138 PRK00023 cmk cytidylate kinase 98.9 2.1E-08 4.5E-13 86.0 10.8 90 179-273 121-222 (225)
139 COG1428 Deoxynucleoside kinase 98.9 6.2E-08 1.3E-12 80.6 13.0 26 90-115 4-29 (216)
140 cd02026 PRK Phosphoribulokinas 98.9 8.5E-09 1.9E-13 90.8 8.4 71 179-253 95-175 (273)
141 COG0572 Udk Uridine kinase [Nu 98.8 3.6E-08 7.7E-13 82.9 11.1 28 88-115 6-33 (218)
142 COG1126 GlnQ ABC-type polar am 98.8 2.1E-09 4.6E-14 89.5 3.5 49 60-114 4-52 (240)
143 COG1118 CysA ABC-type sulfate/ 98.8 1.1E-08 2.4E-13 89.3 7.6 54 62-121 6-60 (345)
144 PRK07429 phosphoribulokinase; 98.8 1.8E-08 4E-13 90.7 8.8 73 179-255 104-186 (327)
145 PLN02318 phosphoribulokinase/u 98.8 1.9E-08 4.2E-13 95.7 9.2 172 89-273 64-271 (656)
146 PF00406 ADK: Adenylate kinase 98.8 6.8E-09 1.5E-13 83.3 5.4 128 95-241 1-138 (151)
147 PRK14021 bifunctional shikimat 98.8 1.6E-07 3.4E-12 90.6 15.4 161 90-274 6-178 (542)
148 COG4619 ABC-type uncharacteriz 98.8 7E-09 1.5E-13 83.2 5.0 61 78-150 17-79 (223)
149 COG1120 FepC ABC-type cobalami 98.8 4.1E-09 8.9E-14 91.1 4.0 59 79-149 17-77 (258)
150 PF00485 PRK: Phosphoribulokin 98.8 2.6E-08 5.6E-13 83.4 8.4 73 180-256 107-189 (194)
151 cd02024 NRK1 Nicotinamide ribo 98.8 3.1E-08 6.6E-13 82.3 8.3 45 178-226 109-154 (187)
152 cd02025 PanK Pantothenate kina 98.8 2.7E-08 5.9E-13 85.0 8.3 23 92-114 1-23 (220)
153 cd02027 APSK Adenosine 5'-phos 98.8 2.4E-08 5.1E-13 80.1 7.2 47 173-220 64-114 (149)
154 COG2074 2-phosphoglycerate kin 98.7 1.5E-07 3.3E-12 80.0 12.0 186 86-276 85-291 (299)
155 KOG0058 Peptide exporter, ABC 98.7 4.7E-09 1E-13 100.8 3.1 93 66-170 466-568 (716)
156 COG4555 NatA ABC-type Na+ tran 98.7 1.3E-08 2.8E-13 84.0 5.0 105 60-175 3-112 (245)
157 PLN02348 phosphoribulokinase 98.7 5.7E-08 1.2E-12 88.6 9.3 28 88-115 47-74 (395)
158 PF01202 SKI: Shikimate kinase 98.7 2.6E-07 5.7E-12 74.7 12.4 66 203-271 86-158 (158)
159 COG4525 TauB ABC-type taurine 98.7 2.2E-07 4.9E-12 76.4 11.8 125 85-222 26-169 (259)
160 COG2274 SunT ABC-type bacterio 98.7 1.7E-08 3.7E-13 99.3 5.4 74 79-164 488-566 (709)
161 KOG0708 Membrane-associated gu 98.7 4.8E-07 1E-11 80.8 13.9 165 90-277 187-353 (359)
162 PLN02165 adenylate isopentenyl 98.7 1.5E-07 3.2E-12 84.4 10.8 28 88-115 41-68 (334)
163 PRK09518 bifunctional cytidyla 98.7 3.6E-07 7.9E-12 90.9 13.8 88 182-274 139-233 (712)
164 TIGR03575 selen_PSTK_euk L-ser 98.6 5.6E-07 1.2E-11 81.3 13.4 61 176-237 123-189 (340)
165 COG1136 SalX ABC-type antimicr 98.6 2.5E-08 5.5E-13 84.6 4.2 37 79-115 20-56 (226)
166 COG3638 ABC-type phosphate/pho 98.6 1.6E-08 3.5E-13 85.3 1.9 33 83-115 23-55 (258)
167 PF06414 Zeta_toxin: Zeta toxi 98.6 2.1E-07 4.6E-12 78.2 8.8 122 88-224 13-142 (199)
168 KOG0056 Heavy metal exporter H 98.6 8.9E-09 1.9E-13 94.8 0.2 92 66-169 538-637 (790)
169 PF03668 ATP_bind_2: P-loop AT 98.6 1.3E-06 2.9E-11 76.3 13.5 78 194-273 75-157 (284)
170 PRK11860 bifunctional 3-phosph 98.6 6.7E-07 1.5E-11 88.3 12.8 89 179-272 555-655 (661)
171 COG2884 FtsE Predicted ATPase 98.6 7.4E-08 1.6E-12 78.8 4.9 35 73-113 17-51 (223)
172 TIGR02868 CydC thiol reductant 98.6 6.4E-08 1.4E-12 93.2 5.3 73 79-164 350-427 (529)
173 KOG3327 Thymidylate kinase/ade 98.6 8.6E-07 1.9E-11 72.1 10.8 179 88-275 3-198 (208)
174 COG0411 LivG ABC-type branched 98.6 7.5E-09 1.6E-13 87.7 -1.1 51 59-115 5-55 (250)
175 COG0410 LivF ABC-type branched 98.6 3.1E-08 6.7E-13 83.4 2.5 50 60-115 5-54 (237)
176 KOG0057 Mitochondrial Fe/S clu 98.6 1.6E-08 3.4E-13 94.4 0.8 102 66-178 352-459 (591)
177 COG1117 PstB ABC-type phosphat 98.6 5.4E-08 1.2E-12 81.1 3.8 46 70-115 12-58 (253)
178 TIGR00554 panK_bact pantothena 98.5 1.6E-07 3.6E-12 83.1 6.9 28 87-114 59-86 (290)
179 TIGR00174 miaA tRNA isopenteny 98.5 3.9E-07 8.5E-12 80.5 9.1 88 92-189 1-97 (287)
180 COG1132 MdlB ABC-type multidru 98.5 1.2E-07 2.5E-12 92.2 6.2 99 68-178 331-440 (567)
181 PRK13537 nodulation ABC transp 98.5 4E-08 8.6E-13 88.2 2.2 51 59-115 8-58 (306)
182 COG1131 CcmA ABC-type multidru 98.5 4.5E-08 9.8E-13 87.2 2.2 35 81-115 22-56 (293)
183 PRK08099 bifunctional DNA-bind 98.5 3.4E-06 7.5E-11 78.2 14.4 26 90-115 219-244 (399)
184 COG4988 CydD ABC-type transpor 98.5 2.5E-07 5.4E-12 87.3 6.8 89 78-178 335-432 (559)
185 PRK06761 hypothetical protein; 98.5 1.3E-05 2.8E-10 70.7 17.0 27 90-116 3-29 (282)
186 PRK09452 potA putrescine/sperm 98.5 2.1E-07 4.6E-12 85.6 6.1 34 82-115 32-65 (375)
187 COG4107 PhnK ABC-type phosphon 98.5 6.2E-07 1.4E-11 72.5 7.9 54 56-115 4-57 (258)
188 PF13238 AAA_18: AAA domain; P 98.5 4.8E-07 1E-11 69.8 7.2 50 177-231 70-120 (129)
189 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 1.7E-07 3.7E-12 93.0 5.8 88 79-178 468-563 (686)
190 COG4618 ArpD ABC-type protease 98.5 1.3E-07 2.8E-12 87.7 4.4 55 83-149 355-411 (580)
191 KOG0055 Multidrug/pheromone ex 98.5 1.5E-07 3.3E-12 95.5 5.0 88 78-177 367-463 (1228)
192 COG4152 ABC-type uncharacteriz 98.4 8E-08 1.7E-12 81.6 2.1 51 59-115 3-53 (300)
193 COG1129 MglA ABC-type sugar tr 98.4 9.2E-08 2E-12 89.6 2.6 52 58-115 8-59 (500)
194 KOG0055 Multidrug/pheromone ex 98.4 3.5E-07 7.6E-12 93.0 6.9 88 79-178 1005-1101(1228)
195 PRK13536 nodulation factor exp 98.4 8.2E-08 1.8E-12 87.3 2.2 61 54-120 37-98 (340)
196 TIGR00958 3a01208 Conjugate Tr 98.4 2.6E-07 5.6E-12 92.1 5.9 88 79-178 496-592 (711)
197 PRK11176 lipid transporter ATP 98.4 3.3E-07 7.1E-12 89.3 6.4 88 79-178 358-455 (582)
198 PRK11174 cysteine/glutathione 98.4 2.5E-07 5.3E-12 90.3 5.5 89 79-178 365-460 (588)
199 KOG3877 NADH:ubiquinone oxidor 98.4 7.9E-06 1.7E-10 70.5 13.7 28 88-115 69-96 (393)
200 COG1134 TagH ABC-type polysacc 98.4 2.1E-07 4.5E-12 79.1 4.1 37 79-115 42-78 (249)
201 PRK11650 ugpC glycerol-3-phosp 98.4 9.4E-07 2E-11 80.9 8.7 34 82-115 22-55 (356)
202 PRK15453 phosphoribulokinase; 98.4 1.6E-06 3.6E-11 75.9 9.6 28 88-115 3-30 (290)
203 COG4559 ABC-type hemin transpo 98.4 3.6E-07 7.8E-12 76.1 5.1 37 79-115 16-52 (259)
204 PRK13951 bifunctional shikimat 98.4 3.5E-06 7.5E-11 80.2 12.3 24 92-115 2-25 (488)
205 TIGR03796 NHPM_micro_ABC1 NHPM 98.4 3.4E-07 7.3E-12 91.3 5.7 88 79-178 494-590 (710)
206 COG3845 ABC-type uncharacteriz 98.4 1.2E-06 2.6E-11 81.1 8.6 87 60-164 6-99 (501)
207 COG4598 HisP ABC-type histidin 98.4 5.1E-06 1.1E-10 67.7 11.1 60 57-122 5-65 (256)
208 TIGR01193 bacteriocin_ABC ABC- 98.4 3.8E-07 8.2E-12 90.9 5.6 75 79-165 489-568 (708)
209 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 1.1E-07 2.3E-12 82.1 1.4 43 79-121 19-62 (254)
210 PRK11432 fbpC ferric transport 98.4 2E-06 4.3E-11 78.6 9.7 34 82-115 24-57 (351)
211 TIGR03265 PhnT2 putative 2-ami 98.4 2.1E-06 4.6E-11 78.5 9.8 39 83-121 23-62 (353)
212 COG4604 CeuD ABC-type enteroch 98.4 3.7E-07 8E-12 75.3 4.3 35 81-115 18-52 (252)
213 TIGR03375 type_I_sec_LssB type 98.4 4.7E-07 1E-11 90.1 6.0 88 79-178 480-576 (694)
214 COG4185 Uncharacterized protei 98.4 8.8E-06 1.9E-10 64.8 11.8 139 90-256 2-157 (187)
215 COG1124 DppF ABC-type dipeptid 98.4 1.5E-07 3.2E-12 80.0 1.9 43 82-124 25-68 (252)
216 PRK10790 putative multidrug tr 98.4 4.4E-07 9.6E-12 88.6 5.4 88 79-178 356-451 (592)
217 COG3840 ThiQ ABC-type thiamine 98.4 2.9E-07 6.2E-12 75.0 3.4 29 86-114 21-49 (231)
218 cd02028 UMPK_like Uridine mono 98.4 1.1E-06 2.3E-11 72.8 6.7 23 92-114 1-23 (179)
219 PRK11160 cysteine/glutathione 98.3 6.8E-07 1.5E-11 87.0 6.3 89 79-179 355-452 (574)
220 PRK11629 lolD lipoprotein tran 98.3 1.4E-07 3E-12 81.3 1.0 35 81-115 26-60 (233)
221 cd03225 ABC_cobalt_CbiO_domain 98.3 5.8E-07 1.3E-11 76.1 4.7 35 81-115 18-52 (211)
222 TIGR02857 CydD thiol reductant 98.3 7.7E-07 1.7E-11 85.7 6.0 74 79-164 337-415 (529)
223 PRK15177 Vi polysaccharide exp 98.3 5.5E-07 1.2E-11 76.5 4.4 33 83-115 6-38 (213)
224 TIGR01186 proV glycine betaine 98.3 4.3E-07 9.2E-12 83.2 3.9 34 82-115 11-44 (363)
225 PRK11300 livG leucine/isoleuci 98.3 1.9E-07 4.1E-12 81.4 1.6 35 81-115 22-56 (255)
226 COG0396 sufC Cysteine desulfur 98.3 5.6E-07 1.2E-11 75.8 4.2 33 82-114 22-54 (251)
227 PTZ00265 multidrug resistance 98.3 4.1E-07 8.9E-12 96.7 4.3 100 79-178 1183-1333(1466)
228 PLN02840 tRNA dimethylallyltra 98.3 9.7E-07 2.1E-11 81.6 6.2 93 87-189 18-119 (421)
229 PRK13657 cyclic beta-1,2-gluca 98.3 8E-07 1.7E-11 86.7 5.7 74 79-164 350-428 (588)
230 COG1135 AbcC ABC-type metal io 98.3 1.3E-06 2.9E-11 76.7 6.3 33 81-113 23-55 (339)
231 PRK12269 bifunctional cytidyla 98.3 4E-06 8.6E-11 84.3 10.3 38 89-126 33-70 (863)
232 PRK11607 potG putrescine trans 98.3 6.1E-06 1.3E-10 76.1 10.8 33 83-115 38-70 (377)
233 PRK10247 putative ABC transpor 98.3 4.2E-07 9E-12 77.9 2.8 36 80-115 23-58 (225)
234 PRK10522 multidrug transporter 98.3 1.1E-06 2.5E-11 84.9 6.1 37 79-115 338-374 (547)
235 PRK13635 cbiO cobalt transport 98.3 3.7E-07 8E-12 80.8 2.2 34 82-115 25-58 (279)
236 TIGR01166 cbiO cobalt transpor 98.3 6.1E-07 1.3E-11 74.8 3.2 34 82-115 10-43 (190)
237 TIGR02203 MsbA_lipidA lipid A 98.3 1.2E-06 2.6E-11 85.1 5.8 73 80-164 348-425 (571)
238 PRK11701 phnK phosphonate C-P 98.3 2.7E-07 5.8E-12 80.7 1.1 35 81-115 23-57 (258)
239 cd03222 ABC_RNaseL_inhibitor T 98.3 9.1E-07 2E-11 73.0 4.2 30 86-115 21-50 (177)
240 cd03219 ABC_Mj1267_LivG_branch 98.3 9.1E-07 2E-11 76.2 4.4 36 80-115 16-51 (236)
241 COG4167 SapF ABC-type antimicr 98.2 1.5E-06 3.2E-11 71.0 5.0 57 59-115 5-64 (267)
242 COG4608 AppF ABC-type oligopep 98.2 8.3E-07 1.8E-11 76.8 3.8 31 85-115 34-64 (268)
243 cd03258 ABC_MetN_methionine_tr 98.2 8.6E-07 1.9E-11 76.2 3.9 35 81-115 22-56 (233)
244 COG3911 Predicted ATPase [Gene 98.2 1.1E-05 2.4E-10 63.4 9.6 154 90-268 9-181 (183)
245 TIGR03522 GldA_ABC_ATP gliding 98.2 2.3E-06 5.1E-11 76.5 6.8 38 83-120 21-59 (301)
246 cd03256 ABC_PhnC_transporter A 98.2 8.6E-07 1.9E-11 76.5 3.7 36 80-115 17-52 (241)
247 cd03257 ABC_NikE_OppD_transpor 98.2 8.5E-07 1.8E-11 75.9 3.6 36 80-115 21-56 (228)
248 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 6.7E-07 1.5E-11 76.1 3.0 35 81-115 21-55 (218)
249 cd03259 ABC_Carb_Solutes_like 98.2 7.8E-07 1.7E-11 75.4 3.3 36 80-115 16-51 (213)
250 cd03262 ABC_HisP_GlnQ_permease 98.2 8.8E-07 1.9E-11 75.0 3.6 35 81-115 17-51 (213)
251 COG4987 CydC ABC-type transpor 98.2 3.2E-06 6.9E-11 79.1 7.4 74 79-164 353-431 (573)
252 TIGR02673 FtsE cell division A 98.2 8.5E-07 1.9E-11 75.2 3.4 35 81-115 19-53 (214)
253 COG4133 CcmA ABC-type transpor 98.2 9.4E-07 2E-11 72.3 3.3 41 69-115 13-53 (209)
254 TIGR00960 3a0501s02 Type II (G 98.2 7.7E-07 1.7E-11 75.6 3.0 35 81-115 20-54 (216)
255 cd03246 ABCC_Protease_Secretio 98.2 1.5E-06 3.3E-11 71.3 4.6 32 84-115 22-53 (173)
256 TIGR03608 L_ocin_972_ABC putat 98.2 7.7E-07 1.7E-11 75.0 3.0 35 81-115 15-49 (206)
257 cd03261 ABC_Org_Solvent_Resist 98.2 7.5E-07 1.6E-11 76.7 2.9 35 81-115 17-51 (235)
258 cd03263 ABC_subfamily_A The AB 98.2 8.1E-07 1.8E-11 75.7 3.1 35 81-115 19-53 (220)
259 cd03235 ABC_Metallic_Cations A 98.2 8.7E-07 1.9E-11 75.1 3.3 35 81-115 16-50 (213)
260 cd03226 ABC_cobalt_CbiO_domain 98.2 8.1E-07 1.8E-11 74.9 3.0 35 81-115 17-51 (205)
261 TIGR01188 drrA daunorubicin re 98.2 8.4E-07 1.8E-11 79.5 3.2 35 81-115 10-44 (302)
262 TIGR02315 ABC_phnC phosphonate 98.2 9.4E-07 2E-11 76.4 3.4 35 81-115 19-53 (243)
263 TIGR02204 MsbA_rel ABC transpo 98.2 1.7E-06 3.8E-11 84.1 5.6 36 80-115 356-391 (576)
264 PRK14274 phosphate ABC transpo 98.2 3.1E-07 6.8E-12 80.3 0.4 55 54-114 8-62 (259)
265 PRK11614 livF leucine/isoleuci 98.2 3.7E-07 8.1E-12 78.7 0.9 35 81-115 22-56 (237)
266 cd03294 ABC_Pro_Gly_Bertaine T 98.2 8.8E-07 1.9E-11 78.0 3.2 37 79-115 39-75 (269)
267 PF13207 AAA_17: AAA domain; P 98.2 1.2E-06 2.6E-11 67.2 3.5 25 92-116 1-25 (121)
268 PRK11247 ssuB aliphatic sulfon 98.2 3.5E-07 7.5E-12 80.0 0.5 35 81-115 29-63 (257)
269 cd03224 ABC_TM1139_LivF_branch 98.2 1E-06 2.2E-11 75.2 3.3 35 81-115 17-51 (222)
270 PRK13648 cbiO cobalt transport 98.2 6.9E-07 1.5E-11 78.6 2.3 34 82-115 27-60 (269)
271 TIGR03410 urea_trans_UrtE urea 98.2 1E-06 2.3E-11 75.6 3.4 35 81-115 17-51 (230)
272 cd03223 ABCD_peroxisomal_ALDP 98.2 1.1E-06 2.5E-11 71.6 3.4 36 80-115 17-52 (166)
273 TIGR01194 cyc_pep_trnsptr cycl 98.2 2.6E-06 5.6E-11 82.6 6.5 36 80-115 358-393 (555)
274 cd03228 ABCC_MRP_Like The MRP 98.2 1.6E-06 3.4E-11 71.1 4.2 34 82-115 20-53 (171)
275 cd03295 ABC_OpuCA_Osmoprotecti 98.2 1.4E-06 3E-11 75.4 4.1 35 81-115 18-52 (242)
276 cd03214 ABC_Iron-Siderophores_ 98.2 1.8E-06 4E-11 71.3 4.6 35 81-115 16-50 (180)
277 cd03265 ABC_DrrA DrrA is the A 98.2 9.6E-07 2.1E-11 75.3 3.0 35 81-115 17-51 (220)
278 PRK13538 cytochrome c biogenes 98.2 1.2E-06 2.5E-11 73.9 3.4 36 80-115 17-52 (204)
279 cd03218 ABC_YhbG The ABC trans 98.2 1.3E-06 2.8E-11 75.1 3.7 35 81-115 17-51 (232)
280 PRK10584 putative ABC transpor 98.2 1E-06 2.2E-11 75.5 3.1 35 81-115 27-61 (228)
281 TIGR02314 ABC_MetN D-methionin 98.2 1.3E-06 2.9E-11 79.4 4.0 35 81-115 22-56 (343)
282 cd02029 PRK_like Phosphoribulo 98.2 6.9E-06 1.5E-10 71.5 8.2 24 92-115 1-24 (277)
283 cd03269 ABC_putative_ATPase Th 98.2 1E-06 2.3E-11 74.5 3.1 34 82-115 18-51 (210)
284 TIGR02211 LolD_lipo_ex lipopro 98.2 1.1E-06 2.4E-11 74.9 3.2 34 82-115 23-56 (221)
285 PRK11248 tauB taurine transpor 98.2 9.8E-07 2.1E-11 77.1 3.0 35 81-115 18-52 (255)
286 PRK10619 histidine/lysine/argi 98.2 3.9E-07 8.4E-12 79.7 0.4 35 81-115 22-56 (257)
287 PRK13543 cytochrome c biogenes 98.2 6.1E-07 1.3E-11 76.3 1.6 35 81-115 28-62 (214)
288 KOG0635 Adenosine 5'-phosphosu 98.2 3.6E-06 7.8E-11 66.3 5.7 27 88-114 29-55 (207)
289 COG1660 Predicted P-loop-conta 98.2 5.9E-05 1.3E-09 64.7 13.5 71 201-272 82-157 (286)
290 TIGR01288 nodI ATP-binding ABC 98.2 3.9E-07 8.5E-12 81.6 0.4 36 80-115 20-55 (303)
291 cd03229 ABC_Class3 This class 98.2 1.1E-06 2.4E-11 72.4 3.1 35 81-115 17-51 (178)
292 PRK10789 putative multidrug tr 98.2 2.5E-06 5.4E-11 83.0 5.9 36 80-115 331-366 (569)
293 cd03292 ABC_FtsE_transporter F 98.2 1E-06 2.2E-11 74.8 2.8 34 82-115 19-52 (214)
294 PRK14250 phosphate ABC transpo 98.2 1.6E-06 3.5E-11 75.0 4.1 35 81-115 20-54 (241)
295 cd03215 ABC_Carb_Monos_II This 98.2 1.3E-06 2.8E-11 72.3 3.4 34 82-115 18-51 (182)
296 PRK13540 cytochrome c biogenes 98.2 1.4E-06 3E-11 73.2 3.4 35 81-115 18-52 (200)
297 PRK13541 cytochrome c biogenes 98.2 1.2E-06 2.6E-11 73.3 3.0 33 83-115 19-51 (195)
298 TIGR01846 type_I_sec_HlyB type 98.2 3.2E-06 7E-11 84.1 6.5 74 79-164 472-550 (694)
299 PRK11264 putative amino-acid A 98.2 1.6E-06 3.4E-11 75.4 3.8 35 81-115 20-54 (250)
300 PRK13638 cbiO cobalt transport 98.2 1.4E-06 3.1E-11 76.8 3.6 35 81-115 18-52 (271)
301 PRK05439 pantothenate kinase; 98.2 3.2E-06 6.9E-11 75.5 5.8 27 88-114 84-110 (311)
302 cd03293 ABC_NrtD_SsuB_transpor 98.2 1.1E-06 2.4E-11 74.9 2.8 35 81-115 21-55 (220)
303 cd03301 ABC_MalK_N The N-termi 98.2 1.2E-06 2.5E-11 74.3 2.9 35 81-115 17-51 (213)
304 PRK09536 btuD corrinoid ABC tr 98.2 1.1E-06 2.4E-11 81.5 2.9 35 81-115 20-54 (402)
305 TIGR00957 MRP_assoc_pro multi 98.2 2.9E-06 6.4E-11 90.9 6.4 89 79-179 1301-1397(1522)
306 PRK10575 iron-hydroxamate tran 98.2 1.8E-06 3.8E-11 75.9 4.0 35 81-115 28-62 (265)
307 TIGR01184 ntrCD nitrate transp 98.2 1.5E-06 3.1E-11 74.8 3.4 32 84-115 5-36 (230)
308 cd03251 ABCC_MsbA MsbA is an e 98.2 1.9E-06 4.1E-11 74.1 4.0 33 83-115 21-53 (234)
309 PLN03232 ABC transporter C fam 98.1 2.4E-06 5.3E-11 91.3 5.7 88 79-178 1251-1346(1495)
310 PRK13548 hmuV hemin importer A 98.1 1.9E-06 4.2E-11 75.3 4.2 35 81-115 19-53 (258)
311 cd03252 ABCC_Hemolysin The ABC 98.1 1.8E-06 3.8E-11 74.5 3.8 34 82-115 20-53 (237)
312 PRK09493 glnQ glutamine ABC tr 98.1 1.5E-06 3.3E-11 75.1 3.4 35 81-115 18-52 (240)
313 cd03244 ABCC_MRP_domain2 Domai 98.1 2E-06 4.3E-11 73.3 4.0 35 81-115 21-55 (221)
314 TIGR02769 nickel_nikE nickel i 98.1 1.8E-06 3.8E-11 75.9 3.8 35 81-115 28-62 (265)
315 TIGR01842 type_I_sec_PrtD type 98.1 2.9E-06 6.2E-11 82.1 5.6 36 80-115 334-369 (544)
316 cd03296 ABC_CysA_sulfate_impor 98.1 1.4E-06 3E-11 75.3 3.1 35 81-115 19-53 (239)
317 cd03254 ABCC_Glucan_exporter_l 98.1 1.5E-06 3.3E-11 74.4 3.3 35 81-115 20-54 (229)
318 COG4181 Predicted ABC-type tra 98.1 2.6E-06 5.7E-11 68.8 4.3 36 79-114 25-60 (228)
319 cd03238 ABC_UvrA The excision 98.1 1.3E-06 2.9E-11 71.9 2.8 30 82-111 13-42 (176)
320 cd03260 ABC_PstB_phosphate_tra 98.1 1.4E-06 3E-11 74.6 3.0 33 82-114 18-50 (227)
321 cd03216 ABC_Carb_Monos_I This 98.1 1.4E-06 3.1E-11 70.8 2.9 35 81-115 17-51 (163)
322 PRK14239 phosphate transporter 98.1 5.5E-07 1.2E-11 78.4 0.5 33 81-113 22-54 (252)
323 TIGR03864 PQQ_ABC_ATP ABC tran 98.1 1.4E-06 3E-11 75.1 3.0 35 81-115 18-52 (236)
324 PRK11153 metN DL-methionine tr 98.1 1.8E-06 3.9E-11 78.7 3.9 34 82-115 23-56 (343)
325 cd03230 ABC_DR_subfamily_A Thi 98.1 1.4E-06 3.1E-11 71.5 2.9 35 81-115 17-51 (173)
326 cd00820 PEPCK_HprK Phosphoenol 98.1 1.4E-06 3.1E-11 65.4 2.6 28 84-111 9-36 (107)
327 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.1 1.4E-06 3E-11 69.4 2.7 34 82-115 18-51 (144)
328 cd03237 ABC_RNaseL_inhibitor_d 98.1 3.2E-06 6.9E-11 73.5 5.1 30 86-115 21-50 (246)
329 PRK13547 hmuV hemin importer A 98.1 2.4E-06 5.1E-11 75.4 4.3 35 81-115 18-52 (272)
330 TIGR02324 CP_lyasePhnL phospho 98.1 1.7E-06 3.8E-11 73.9 3.4 35 81-115 25-59 (224)
331 PRK14242 phosphate transporter 98.1 6.4E-07 1.4E-11 78.1 0.7 34 81-114 23-56 (253)
332 PRK11308 dppF dipeptide transp 98.1 2.3E-06 5E-11 77.5 4.3 35 81-115 32-66 (327)
333 cd03266 ABC_NatA_sodium_export 98.1 1.6E-06 3.5E-11 73.7 3.1 34 82-115 23-56 (218)
334 PLN03130 ABC transporter C fam 98.1 3.5E-06 7.5E-11 90.6 6.2 88 79-178 1254-1349(1622)
335 TIGR03005 ectoine_ehuA ectoine 98.1 1.9E-06 4.2E-11 75.0 3.5 35 81-115 17-51 (252)
336 TIGR02770 nickel_nikD nickel i 98.1 2.2E-06 4.7E-11 73.7 3.8 33 83-115 5-37 (230)
337 PTZ00243 ABC transporter; Prov 98.1 3.5E-06 7.6E-11 90.3 6.1 89 79-179 1325-1421(1560)
338 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.1 1.2E-06 2.7E-11 74.9 2.2 36 80-115 38-73 (224)
339 TIGR01189 ccmA heme ABC export 98.1 1.8E-06 4E-11 72.4 3.2 35 81-115 17-51 (198)
340 TIGR00972 3a0107s01c2 phosphat 98.1 2E-06 4.2E-11 74.7 3.5 35 81-115 18-52 (247)
341 PRK10908 cell division protein 98.1 1.7E-06 3.8E-11 73.8 3.1 35 81-115 19-53 (222)
342 TIGR02323 CP_lyasePhnK phospho 98.1 1.8E-06 3.9E-11 75.2 3.3 35 81-115 20-54 (253)
343 cd03298 ABC_ThiQ_thiamine_tran 98.1 1.7E-06 3.8E-11 73.2 3.1 34 82-115 16-49 (211)
344 PRK13647 cbiO cobalt transport 98.1 2.2E-06 4.9E-11 75.6 3.9 34 82-115 23-56 (274)
345 cd03247 ABCC_cytochrome_bd The 98.1 1.8E-06 3.8E-11 71.2 3.0 33 83-115 21-53 (178)
346 PRK13636 cbiO cobalt transport 98.1 8.2E-07 1.8E-11 78.8 1.1 35 81-115 23-57 (283)
347 PRK15056 manganese/iron transp 98.1 1.7E-06 3.6E-11 76.3 3.1 35 81-115 24-58 (272)
348 PRK10070 glycine betaine trans 98.1 1.5E-06 3.3E-11 80.5 2.9 35 81-115 45-79 (400)
349 PRK10895 lipopolysaccharide AB 98.1 1.9E-06 4E-11 74.6 3.2 35 81-115 20-54 (241)
350 cd03250 ABCC_MRP_domain1 Domai 98.1 1.8E-06 4E-11 72.7 3.1 35 81-115 22-56 (204)
351 cd03369 ABCC_NFT1 Domain 2 of 98.1 2.7E-06 5.8E-11 71.8 4.1 35 81-115 25-59 (207)
352 cd03231 ABC_CcmA_heme_exporter 98.1 2E-06 4.3E-11 72.4 3.3 35 81-115 17-51 (201)
353 cd03267 ABC_NatA_like Similar 98.1 1.7E-06 3.6E-11 74.7 2.9 37 79-115 36-72 (236)
354 PRK13539 cytochrome c biogenes 98.1 1.8E-06 3.9E-11 72.9 3.1 35 81-115 19-53 (207)
355 PRK11819 putative ABC transpor 98.1 8.3E-07 1.8E-11 86.1 1.1 36 80-115 23-58 (556)
356 TIGR03873 F420-0_ABC_ATP propo 98.1 3E-06 6.4E-11 74.0 4.5 35 81-115 18-52 (256)
357 PRK10253 iron-enterobactin tra 98.1 2.7E-06 5.8E-11 74.7 4.2 36 80-115 23-58 (265)
358 PRK09700 D-allose transporter 98.1 7.8E-07 1.7E-11 85.4 0.8 35 81-115 22-56 (510)
359 PHA03132 thymidine kinase; Pro 98.1 2.6E-05 5.6E-10 74.8 11.1 26 89-114 256-281 (580)
360 PF00005 ABC_tran: ABC transpo 98.1 1.1E-06 2.5E-11 68.9 1.6 30 86-115 7-36 (137)
361 PRK13650 cbiO cobalt transport 98.1 2.6E-06 5.6E-11 75.4 4.1 33 83-115 26-58 (279)
362 PRK13632 cbiO cobalt transport 98.1 2.5E-06 5.4E-11 75.2 4.0 34 82-115 27-60 (271)
363 PRK14254 phosphate ABC transpo 98.1 7.5E-07 1.6E-11 79.1 0.6 34 81-114 56-89 (285)
364 PRK11124 artP arginine transpo 98.1 2E-06 4.3E-11 74.4 3.3 35 81-115 19-53 (242)
365 PRK13646 cbiO cobalt transport 98.1 1.8E-06 3.8E-11 76.8 3.0 35 81-115 24-58 (286)
366 PF13189 Cytidylate_kin2: Cyti 98.1 2E-05 4.3E-10 65.2 9.1 140 92-236 1-147 (179)
367 PRK15079 oligopeptide ABC tran 98.1 2.6E-06 5.6E-11 77.3 4.1 35 81-115 38-72 (331)
368 PRK10771 thiQ thiamine transpo 98.1 2.2E-06 4.7E-11 73.8 3.4 33 83-115 18-50 (232)
369 cd03268 ABC_BcrA_bacitracin_re 98.1 1.9E-06 4.1E-11 72.8 2.9 35 81-115 17-51 (208)
370 PRK13649 cbiO cobalt transport 98.1 1.9E-06 4.2E-11 76.2 3.1 34 82-115 25-58 (280)
371 PRK13637 cbiO cobalt transport 98.1 1.9E-06 4.2E-11 76.5 3.1 33 83-115 26-58 (287)
372 PRK15112 antimicrobial peptide 98.1 2.2E-06 4.8E-11 75.4 3.4 35 81-115 30-64 (267)
373 cd03245 ABCC_bacteriocin_expor 98.1 2.2E-06 4.7E-11 73.0 3.3 34 82-115 22-55 (220)
374 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.1 2.1E-06 4.5E-11 74.1 3.1 34 82-115 21-54 (238)
375 cd03264 ABC_drug_resistance_li 98.1 2E-06 4.3E-11 72.8 2.9 33 82-115 18-50 (211)
376 cd03248 ABCC_TAP TAP, the Tran 98.1 2.3E-06 4.9E-11 73.3 3.3 35 81-115 31-65 (226)
377 COG4586 ABC-type uncharacteriz 98.1 5.3E-06 1.1E-10 71.7 5.4 36 85-120 45-81 (325)
378 PRK14246 phosphate ABC transpo 98.1 1E-06 2.3E-11 77.0 1.1 34 82-115 28-61 (257)
379 PRK14265 phosphate ABC transpo 98.1 1.2E-06 2.6E-11 77.3 1.6 34 81-114 37-70 (274)
380 PRK13652 cbiO cobalt transport 98.1 2.9E-06 6.3E-11 75.0 4.0 32 84-115 24-55 (277)
381 PRK14273 phosphate ABC transpo 98.1 1E-06 2.2E-11 76.8 1.0 35 81-115 24-58 (254)
382 cd03253 ABCC_ATM1_transporter 98.1 3E-06 6.5E-11 73.0 3.9 34 82-115 19-52 (236)
383 TIGR01192 chvA glucan exporter 98.1 4.9E-06 1.1E-10 81.2 5.7 36 80-115 351-386 (585)
384 COG4674 Uncharacterized ABC-ty 98.1 4.7E-07 1E-11 74.5 -1.2 51 59-115 6-56 (249)
385 PRK14248 phosphate ABC transpo 98.1 1.1E-06 2.5E-11 77.2 1.1 34 81-114 38-71 (268)
386 TIGR03415 ABC_choXWV_ATP choli 98.1 1.8E-06 4E-11 79.5 2.5 35 81-115 41-75 (382)
387 TIGR01978 sufC FeS assembly AT 98.1 2.5E-06 5.3E-11 73.8 3.1 35 80-114 16-50 (243)
388 PRK10851 sulfate/thiosulfate t 98.1 2.4E-06 5.2E-11 78.1 3.2 34 82-115 20-53 (353)
389 PRK11831 putative ABC transpor 98.1 2.3E-06 4.9E-11 75.4 2.9 35 81-115 24-58 (269)
390 PRK13641 cbiO cobalt transport 98.1 2.4E-06 5.3E-11 75.9 3.1 34 82-115 25-58 (287)
391 cd03233 ABC_PDR_domain1 The pl 98.1 2E-06 4.4E-11 72.4 2.5 34 82-115 25-58 (202)
392 TIGR01277 thiQ thiamine ABC tr 98.1 2.7E-06 5.8E-11 72.2 3.1 33 83-115 17-49 (213)
393 PRK13549 xylose transporter AT 98.1 1.1E-06 2.3E-11 84.4 0.7 36 80-115 21-56 (506)
394 PRK11022 dppD dipeptide transp 98.1 3.5E-06 7.5E-11 76.3 4.0 34 82-115 25-58 (326)
395 PRK09544 znuC high-affinity zi 98.1 2.4E-06 5.1E-11 74.5 2.8 34 82-115 22-55 (251)
396 cd03234 ABCG_White The White s 98.1 2.8E-06 6.1E-11 72.7 3.2 34 82-115 25-58 (226)
397 PRK13640 cbiO cobalt transport 98.1 1.3E-06 2.8E-11 77.4 1.1 34 82-115 25-58 (282)
398 KOG3308 Uncharacterized protei 98.1 2.8E-05 6E-10 64.3 8.7 178 90-273 4-205 (225)
399 TIGR03771 anch_rpt_ABC anchore 98.0 4E-06 8.6E-11 71.7 4.1 30 86-115 2-31 (223)
400 cd03213 ABCG_EPDR ABCG transpo 98.0 3.3E-06 7.1E-11 70.7 3.4 33 82-114 27-59 (194)
401 PRK13639 cbiO cobalt transport 98.0 2.7E-06 5.9E-11 75.1 3.1 34 82-115 20-53 (275)
402 PRK11000 maltose/maltodextrin 98.0 2.7E-06 5.8E-11 78.3 3.1 34 82-115 21-54 (369)
403 PRK14264 phosphate ABC transpo 98.0 1.8E-06 3.8E-11 77.5 1.9 34 81-114 62-95 (305)
404 TIGR03411 urea_trans_UrtD urea 98.0 2.9E-06 6.4E-11 73.3 3.2 35 81-115 19-53 (242)
405 PRK13645 cbiO cobalt transport 98.0 2.5E-06 5.4E-11 75.9 2.8 34 82-115 29-62 (289)
406 PRK14267 phosphate ABC transpo 98.0 3E-06 6.4E-11 73.8 3.2 36 80-115 20-55 (253)
407 PRK13651 cobalt transporter AT 98.0 2.6E-06 5.6E-11 76.4 2.8 34 82-115 25-58 (305)
408 PRK13633 cobalt transporter AT 98.0 3.1E-06 6.7E-11 75.0 3.3 33 83-115 29-61 (280)
409 cd03290 ABCC_SUR1_N The SUR do 98.0 3.1E-06 6.7E-11 72.1 3.1 32 84-115 21-52 (218)
410 PRK09473 oppD oligopeptide tra 98.0 4E-06 8.7E-11 76.0 4.0 35 81-115 33-67 (330)
411 PRK13634 cbiO cobalt transport 98.0 3E-06 6.6E-11 75.4 3.1 34 82-115 25-58 (290)
412 COG1123 ATPase components of v 98.0 3E-06 6.5E-11 80.2 3.2 34 82-115 309-342 (539)
413 PRK13546 teichoic acids export 98.0 3.4E-06 7.4E-11 74.1 3.4 37 79-115 39-75 (264)
414 PRK14247 phosphate ABC transpo 98.0 3.4E-06 7.4E-11 73.3 3.4 35 81-115 20-54 (250)
415 TIGR03258 PhnT 2-aminoethylpho 98.0 7.4E-06 1.6E-10 75.1 5.7 34 82-115 23-56 (362)
416 PRK10418 nikD nickel transport 98.0 1.8E-06 3.9E-11 75.3 1.6 35 81-115 20-54 (254)
417 KOG1384 tRNA delta(2)-isopente 98.0 3.2E-05 6.8E-10 68.5 9.2 126 89-225 6-160 (348)
418 TIGR02142 modC_ABC molybdenum 98.0 3.2E-06 6.9E-11 77.4 3.2 33 83-115 16-48 (354)
419 COG5265 ATM1 ABC-type transpor 98.0 5.3E-06 1.2E-10 75.6 4.5 90 69-170 266-363 (497)
420 cd03288 ABCC_SUR2 The SUR doma 98.0 4.6E-06 9.9E-11 72.9 4.0 34 82-115 39-72 (257)
421 PRK13631 cbiO cobalt transport 98.0 3.5E-06 7.6E-11 76.0 3.4 35 81-115 43-77 (320)
422 COG4615 PvdE ABC-type sideroph 98.0 5.3E-06 1.1E-10 75.1 4.4 69 69-149 326-398 (546)
423 PRK13643 cbiO cobalt transport 98.0 3.3E-06 7.2E-11 75.1 3.1 34 82-115 24-57 (288)
424 TIGR03740 galliderm_ABC gallid 98.0 3.4E-06 7.4E-11 72.0 3.0 34 82-115 18-51 (223)
425 PRK03695 vitamin B12-transport 98.0 4.9E-06 1.1E-10 72.3 3.8 38 83-120 15-52 (248)
426 PRK13644 cbiO cobalt transport 98.0 3.4E-06 7.4E-11 74.5 2.9 34 82-115 20-53 (274)
427 PRK10419 nikE nickel transport 98.0 3.8E-06 8.2E-11 73.9 3.1 35 81-115 29-63 (268)
428 PRK14259 phosphate ABC transpo 98.0 3.5E-06 7.6E-11 74.2 2.9 34 81-114 30-63 (269)
429 TIGR02982 heterocyst_DevA ABC 98.0 4E-06 8.6E-11 71.5 3.2 34 82-115 23-56 (220)
430 PRK14262 phosphate ABC transpo 98.0 4.1E-06 8.8E-11 72.8 3.3 35 81-115 20-54 (250)
431 PLN02748 tRNA dimethylallyltra 98.0 8.8E-06 1.9E-10 76.5 5.6 92 88-189 20-120 (468)
432 cd03236 ABC_RNaseL_inhibitor_d 98.0 5.6E-06 1.2E-10 72.3 4.1 29 87-115 23-51 (255)
433 COG1122 CbiO ABC-type cobalt t 98.0 1.1E-05 2.5E-10 69.4 5.8 35 81-115 21-55 (235)
434 PRK11231 fecE iron-dicitrate t 98.0 4.1E-06 8.8E-11 73.1 3.1 35 81-115 19-53 (255)
435 PRK10744 pstB phosphate transp 98.0 3.8E-06 8.2E-11 73.6 2.9 34 81-114 30-63 (260)
436 PRK13642 cbiO cobalt transport 98.0 5.4E-06 1.2E-10 73.3 3.9 34 82-115 25-58 (277)
437 PRK14240 phosphate transporter 98.0 4E-06 8.7E-11 72.9 3.0 34 81-114 20-53 (250)
438 PRK10938 putative molybdenum t 98.0 2E-06 4.3E-11 82.2 1.1 35 81-115 20-54 (490)
439 KOG3078 Adenylate kinase [Nucl 98.0 6.3E-05 1.4E-09 64.1 10.0 175 89-280 14-232 (235)
440 cd03300 ABC_PotA_N PotA is an 98.0 4.8E-06 1E-10 71.6 3.4 35 81-115 17-51 (232)
441 cd03291 ABCC_CFTR1 The CFTR su 98.0 4.3E-06 9.3E-11 74.1 3.1 36 80-115 53-88 (282)
442 PRK14241 phosphate transporter 98.0 4E-06 8.6E-11 73.3 2.8 34 81-114 21-54 (258)
443 PRK10762 D-ribose transporter 98.0 1.6E-06 3.6E-11 83.0 0.4 35 81-115 21-55 (501)
444 PRK14253 phosphate ABC transpo 98.0 4.8E-06 1.1E-10 72.3 3.3 35 81-115 20-54 (249)
445 PF01591 6PF2K: 6-phosphofruct 98.0 6.4E-05 1.4E-09 64.1 10.0 26 90-115 12-37 (222)
446 PRK10636 putative ABC transpor 98.0 1.9E-06 4.1E-11 84.9 0.7 35 80-114 17-51 (638)
447 PRK14256 phosphate ABC transpo 98.0 4.8E-06 1E-10 72.5 3.2 34 81-114 21-54 (252)
448 PRK11144 modC molybdate transp 98.0 4E-06 8.7E-11 76.7 2.8 33 83-115 17-49 (352)
449 PRK15439 autoinducer 2 ABC tra 98.0 2E-06 4.3E-11 82.6 0.8 34 82-115 29-62 (510)
450 PRK14235 phosphate transporter 98.0 4.7E-06 1E-10 73.3 3.0 34 81-114 36-69 (267)
451 PRK10636 putative ABC transpor 98.0 2.6E-06 5.6E-11 83.9 1.5 37 79-115 327-363 (638)
452 PRK09984 phosphonate/organopho 98.0 4.7E-06 1E-10 73.0 3.0 35 81-115 21-55 (262)
453 cd03297 ABC_ModC_molybdenum_tr 98.0 5.4E-06 1.2E-10 70.3 3.3 33 82-115 16-48 (214)
454 PF13521 AAA_28: AAA domain; P 98.0 5.4E-05 1.2E-09 61.3 9.0 21 93-113 2-22 (163)
455 COG1119 ModF ABC-type molybden 98.0 6.7E-06 1.4E-10 70.1 3.7 39 77-115 44-82 (257)
456 PRK14249 phosphate ABC transpo 98.0 4.9E-06 1.1E-10 72.4 3.0 35 81-115 21-55 (251)
457 cd03232 ABC_PDR_domain2 The pl 98.0 4.4E-06 9.4E-11 69.8 2.5 33 82-114 25-57 (192)
458 PRK14270 phosphate ABC transpo 98.0 5.5E-06 1.2E-10 72.1 3.2 34 81-114 21-54 (251)
459 PRK14237 phosphate transporter 98.0 5.2E-06 1.1E-10 73.0 3.0 34 81-114 37-70 (267)
460 COG4136 ABC-type uncharacteriz 97.9 5.5E-06 1.2E-10 65.6 2.8 37 79-115 17-53 (213)
461 cd03217 ABC_FeS_Assembly ABC-t 97.9 9.2E-06 2E-10 68.3 4.4 34 80-113 16-49 (200)
462 PRK14255 phosphate ABC transpo 97.9 5.6E-06 1.2E-10 72.0 3.2 34 81-114 22-55 (252)
463 PRK14243 phosphate transporter 97.9 5.9E-06 1.3E-10 72.5 3.3 34 81-114 27-60 (264)
464 PRK14251 phosphate ABC transpo 97.9 5.5E-06 1.2E-10 72.1 3.1 33 82-114 22-54 (251)
465 COG3896 Chloramphenicol 3-O-ph 97.9 0.00054 1.2E-08 54.7 13.8 165 87-271 20-204 (205)
466 PRK09580 sufC cysteine desulfu 97.9 8.3E-06 1.8E-10 70.7 4.1 35 80-114 17-51 (248)
467 PRK14268 phosphate ABC transpo 97.9 5.4E-06 1.2E-10 72.5 2.9 35 81-115 29-63 (258)
468 PRK14272 phosphate ABC transpo 97.9 6.6E-06 1.4E-10 71.6 3.4 34 81-114 21-54 (252)
469 TIGR00968 3a0106s01 sulfate AB 97.9 6E-06 1.3E-10 71.3 3.1 34 82-115 18-51 (237)
470 TIGR01526 nadR_NMN_Atrans nico 97.9 0.0001 2.2E-09 66.7 11.1 26 90-115 162-187 (325)
471 PRK14261 phosphate ABC transpo 97.9 5.8E-06 1.3E-10 72.0 3.0 34 81-114 23-56 (253)
472 cd03299 ABC_ModC_like Archeal 97.9 6E-06 1.3E-10 71.2 3.0 34 82-115 17-50 (235)
473 CHL00131 ycf16 sulfate ABC tra 97.9 5.7E-06 1.2E-10 72.0 2.8 34 80-113 23-56 (252)
474 cd01130 VirB11-like_ATPase Typ 97.9 0.00012 2.5E-09 60.8 10.6 122 88-225 23-149 (186)
475 PHA00729 NTP-binding motif con 97.9 9.6E-05 2.1E-09 63.0 10.1 23 92-114 19-41 (226)
476 PRK11147 ABC transporter ATPas 97.9 3.1E-06 6.7E-11 83.4 1.1 37 79-115 334-370 (635)
477 PRK14260 phosphate ABC transpo 97.9 6.2E-06 1.3E-10 72.2 2.9 35 81-115 24-58 (259)
478 PRK15134 microcin C ABC transp 97.9 2.8E-06 6.1E-11 81.9 0.8 36 80-115 25-60 (529)
479 PRK14238 phosphate transporter 97.9 9.1E-06 2E-10 71.6 4.0 34 81-114 41-74 (271)
480 PRK14269 phosphate ABC transpo 97.9 6.1E-06 1.3E-10 71.6 2.8 33 82-114 20-52 (246)
481 PRK14245 phosphate ABC transpo 97.9 6.3E-06 1.4E-10 71.7 2.8 32 82-113 21-52 (250)
482 PRK14236 phosphate transporter 97.9 6.9E-06 1.5E-10 72.4 3.1 35 81-115 42-76 (272)
483 cd03289 ABCC_CFTR2 The CFTR su 97.9 9.7E-06 2.1E-10 71.6 3.9 40 81-120 21-60 (275)
484 PRK14271 phosphate ABC transpo 97.9 6.9E-06 1.5E-10 72.6 2.9 35 81-115 38-72 (276)
485 PRK14244 phosphate ABC transpo 97.9 7E-06 1.5E-10 71.4 3.0 34 81-114 22-55 (251)
486 PRK15093 antimicrobial peptide 97.9 7.2E-06 1.6E-10 74.4 3.1 35 81-115 24-58 (330)
487 COG1072 CoaA Panthothenate kin 97.9 1E-05 2.2E-10 70.1 3.8 28 87-114 79-106 (283)
488 PRK14729 miaA tRNA delta(2)-is 97.9 4E-05 8.7E-10 68.2 7.6 89 89-189 3-101 (300)
489 COG3172 NadR Predicted ATPase/ 97.9 0.00035 7.7E-09 55.8 12.0 26 90-115 8-33 (187)
490 COG4138 BtuD ABC-type cobalami 97.9 1.7E-05 3.6E-10 64.4 4.7 35 86-120 21-55 (248)
491 PRK14258 phosphate ABC transpo 97.9 7.7E-06 1.7E-10 71.7 3.0 35 81-115 24-58 (261)
492 PRK09700 D-allose transporter 97.9 7.7E-06 1.7E-10 78.5 3.2 36 80-115 279-314 (510)
493 PRK11147 ABC transporter ATPas 97.9 3.1E-06 6.6E-11 83.4 0.4 35 81-115 20-54 (635)
494 PRK14252 phosphate ABC transpo 97.9 7.4E-06 1.6E-10 71.9 2.8 35 80-114 32-66 (265)
495 COG4778 PhnL ABC-type phosphon 97.9 1.1E-05 2.4E-10 65.2 3.4 38 77-114 24-61 (235)
496 PRK00098 GTPase RsgA; Reviewed 97.9 1.7E-05 3.6E-10 71.0 5.0 94 88-181 162-276 (298)
497 PRK13409 putative ATPase RIL; 97.9 1E-05 2.3E-10 78.8 3.9 35 80-115 90-124 (590)
498 PRK15064 ABC transporter ATP-b 97.9 8.9E-06 1.9E-10 78.5 3.3 35 81-115 18-52 (530)
499 PRK14275 phosphate ABC transpo 97.9 1.2E-05 2.6E-10 71.4 3.8 34 81-114 56-89 (286)
500 PRK10261 glutathione transport 97.9 1.3E-05 2.8E-10 78.8 4.3 35 81-115 341-375 (623)
No 1
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.8e-38 Score=252.95 Aligned_cols=184 Identities=43% Similarity=0.745 Sum_probs=176.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.|.+++|+||||+|||||.++|.+.. .+.++++++||+|+.|+++|.+|+|++.++|..++.++.|++|..+++|+||+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT 81 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGT 81 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccC
Confidence 69999999999999999999998776 79999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCc
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~ 248 (284)
+...++..+..|++||+|.+++++.+++..+ .+.+.||+.+|+.+.|.+||..|+.++++.+..||.++..|+.....|
T Consensus 82 ~~~~ve~~~~~G~~vildId~qGa~qvk~~~-p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~~f 160 (191)
T COG0194 82 SREPVEQALAEGKDVILDIDVQGALQVKKKM-PNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEF 160 (191)
T ss_pred cHHHHHHHHhcCCeEEEEEehHHHHHHHHhC-CCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998 689999999999999999999999999999999999999999998899
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 249 DYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 249 D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
|+||+|++ ++.++.++..++..+..+
T Consensus 161 dyvivNdd--~e~a~~~l~~ii~aer~~ 186 (191)
T COG0194 161 DYVIVNDD--LEKALEELKSIILAERLR 186 (191)
T ss_pred CEEEECcc--HHHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999988433
No 2
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=7.5e-34 Score=236.16 Aligned_cols=182 Identities=35% Similarity=0.601 Sum_probs=168.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+|++|+|+||||||||||++.|.+.++.+...+++++|+++.|+.+|.+|+|++.++|..++.++.|++|+.++++.||+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt 82 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT 82 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence 48999999999999999999998887777778899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCc
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~ 248 (284)
+.+.++..+++|+.||+|.+.+++..++..++...++||+.+|+.+++.+|+.+|+..+++++.+|++.+..+.++...+
T Consensus 83 ~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~~~~~ 162 (186)
T PRK14737 83 PKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEF 162 (186)
T ss_pred cHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999998874334789999999999999999999889999999999988888777889
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHH
Q 023332 249 DYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 249 D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
|++|+|++ ++++.+++.++|..
T Consensus 163 D~vI~N~d--le~a~~ql~~ii~~ 184 (186)
T PRK14737 163 DYKIINDD--LEDAIADLEAIICG 184 (186)
T ss_pred CEEEECcC--HHHHHHHHHHHHhc
Confidence 99999985 99999999998865
No 3
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.97 E-value=6.4e-30 Score=212.78 Aligned_cols=181 Identities=39% Similarity=0.604 Sum_probs=167.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+++|+|+|||||||+|+++.|....+ .+..++++++|.++.++.+|.+|+|++.++|..++..+.|+++..+.++.||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 67899999999999999999988765 68999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCc
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~ 248 (284)
+.+.+++.++.|+.||+|+++.++.++.+.. ..+++||+.+|+.+++.+|+..|+.++.+.+.+|+..+..+....+.+
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~-~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~~~f 160 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQ-LYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEYHLF 160 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999998876 778999999988889999999999889999999999877766555779
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 249 DYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 249 D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
|++|+|++ ++++++++.++|++.
T Consensus 161 d~~I~n~~--l~~~~~~l~~~i~~~ 183 (184)
T smart00072 161 DYVIVNDD--LEDAYEELKEILEAE 183 (184)
T ss_pred CEEEECcC--HHHHHHHHHHHHHhc
Confidence 99999986 999999999999764
No 4
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.97 E-value=2.4e-29 Score=212.84 Aligned_cols=192 Identities=53% Similarity=0.866 Sum_probs=171.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
+..|++|+|+||||||||||++.|.+....+.+...+++|.++.++.+|.+|+|++.++|..++.++.|++|+.++++.|
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 56799999999999999999999987655677889999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccC
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK 246 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~ 246 (284)
|++.+.++..++.|+.||++++.+++..+++.+ .+..+||+.+|+.+++.+|+..|+.++.+.+.+|+.....++....
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~-pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~~ 168 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLV-PEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLP 168 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhC-CCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999998888765 6667788887777899999999988888899999998877666556
Q ss_pred CccEEEECCCCCHHHHHHHHHHHHHHHHhhhhh
Q 023332 247 NFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQ 279 (284)
Q Consensus 247 ~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~ 279 (284)
.+|++++|+++++++++++|.++|...+.+.+-
T Consensus 169 ~~~~~iId~~~~~e~v~~~i~~~l~~~~~~~~~ 201 (206)
T PRK14738 169 EFDYVVVNPEDRLDEAVAQIMAIISAEKSRVHP 201 (206)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHhcccCc
Confidence 689999999889999999999999988655543
No 5
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.97 E-value=7.5e-30 Score=212.16 Aligned_cols=182 Identities=41% Similarity=0.646 Sum_probs=163.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
++++++|+||+|||||||++.|....+ .+..++.+++|+++.++.+|.+|+|++.++|..++..+.|+++..+.++.||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 368999999999999999999987765 6889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCC
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKN 247 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~ 247 (284)
+..+.++.+++.|+.||+|.+..++..++.. +..+.+|||.+|+.+.+.+|+++|+.++.+.+.+++.....++.....
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~-~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~ 159 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKA-GFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNE 159 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHC-TTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGG
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhc-ccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhc
Confidence 9999999999999999999999999999887 589999999999999999999999887788898999888777766655
Q ss_pred ccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 248 FDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
||++|+|++ +++++++|.++|+++
T Consensus 160 fd~vi~n~~--le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 160 FDYVIVNDD--LEEAVKELKEIIEQE 183 (183)
T ss_dssp SSEEEECSS--HHHHHHHHHHHHHHH
T ss_pred CCEEEECcC--HHHHHHHHHHHHHhC
Confidence 999999876 999999999999864
No 6
>PLN02772 guanylate kinase
Probab=99.96 E-value=2e-28 Score=220.76 Aligned_cols=187 Identities=30% Similarity=0.455 Sum_probs=170.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.+++++|+||||+||+||++.|.+.++ .+.+.++++||+++.++.+|.+|+|++.++|..++.++.|++++.+++++||
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YG 213 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYG 213 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCcccc
Confidence 568999999999999999999987765 5788899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhc---
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKH--- 244 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~--- 244 (284)
++.+.++.++++|+.||+|.+.++..+++... ...++||+.+|+.+++.+||..|+..+++.+.+|++.+..+++.
T Consensus 214 Tsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~-l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~ 292 (398)
T PLN02772 214 TSIEAVEVVTDSGKRCILDIDVQGARSVRASS-LEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKS 292 (398)
T ss_pred ccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhc-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999998876 67788999999999999999999999999999999988666654
Q ss_pred cCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 245 VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 245 ~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
...||++|+|++ ++++++++.++|........
T Consensus 293 ~~~fD~vIvNDd--Le~A~~~L~~iL~~~~~~~~ 324 (398)
T PLN02772 293 SGIFDHILYNDN--LEECYKNLKKLLGLDGLAAV 324 (398)
T ss_pred cCCCCEEEECCC--HHHHHHHHHHHHhhcCcccc
Confidence 357999999986 99999999999988764443
No 7
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.95 E-value=8.1e-27 Score=197.18 Aligned_cols=190 Identities=45% Similarity=0.740 Sum_probs=168.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.+|++|+|+||||||||||++.|++.++.+....++++|+|..|+.+|.++++++.+.+...+.++.++++.++.++.|+
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 56999999999999999999999998877788888999999999999999999999999999888899999999999999
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCC
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKN 247 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~ 247 (284)
.....++..+..|..||+|.++.+...+...++ +..+|++.+++.+++.+|+..|+.++++.+.+|+..+..+.++...
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~ 161 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP-DAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASE 161 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC-CcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999988988874 6677888777789999999999988999999999988777766677
Q ss_pred ccEEEECCCCCHHHHHHHHHHHHHHH-Hhhhhhh
Q 023332 248 FDYVVVNAEGKLDVAVKLVESIIDAE-KAKVQQR 280 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~~~i~~~-~~~~~~~ 280 (284)
+|++++|+ ++++++.++.++++.. .....|+
T Consensus 162 ~d~vi~n~--~~e~~~~~l~~il~~~~~~~~~~~ 193 (205)
T PRK00300 162 YDYVIVND--DLDTALEELKAIIRAERLRRSRQQ 193 (205)
T ss_pred CCEEEECC--CHHHHHHHHHHHHHHHHhhhhhhH
Confidence 99999876 4999999999999997 4344443
No 8
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.95 E-value=1.5e-26 Score=191.58 Aligned_cols=179 Identities=47% Similarity=0.766 Sum_probs=160.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
|++|+|+|||||||||+++.|++.++.......+++|++..++..+.++++++...+...+..+.++++..+.++.||..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 80 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTP 80 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCc
Confidence 67999999999999999999999877777777889999999999999999999999998888999999988999999999
Q ss_pred HHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCcc
Q 023332 170 KKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFD 249 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D 249 (284)
.+.++.++++|+.||+|.++.+...+.+.+ ..+..|++.+++.+++++|+..|...+.+.+.+++..+..++++...+|
T Consensus 81 ~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~-~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~~~~~d 159 (180)
T TIGR03263 81 KSPVEEALAAGKDVLLEIDVQGARQVKKKF-PDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFD 159 (180)
T ss_pred HHHHHHHHHCCCeEEEECCHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccccCc
Confidence 999999999999999999999998888887 5567777877778999999999998888899999998877777777899
Q ss_pred EEEECCCCCHHHHHHHHHHHHH
Q 023332 250 YVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 250 ~vivn~~~~~e~~~~~i~~~i~ 271 (284)
++|+|++ ++++++++.+++.
T Consensus 160 ~~i~n~~--~~~~~~~l~~~~~ 179 (180)
T TIGR03263 160 YVIVNDD--LEKAVEELKSIIL 179 (180)
T ss_pred EEEECCC--HHHHHHHHHHHHh
Confidence 9999975 9999999998875
No 9
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=175.27 Aligned_cols=190 Identities=39% Similarity=0.614 Sum_probs=171.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
...++|.||+|+||+|++++|.+.++ .+++.+++++|.|+.++.+|.+|++.+..+|..++.+..|++++++.++.||.
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGt 116 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGT 116 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCc
Confidence 46799999999999999999988877 59999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccC--
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK-- 246 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~-- 246 (284)
..+.+++....|+.+++|.+.++...++.. ..+.+++|+.+|+...+.+||++|+.++.+.+.+|+..+..++....
T Consensus 117 si~av~~~~~~gk~~ildId~qg~~~i~~~-~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~ 195 (231)
T KOG0707|consen 117 SIAAVQRLMLSGKVCILDIDLQGVQPIRAT-SLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENS 195 (231)
T ss_pred hHHHHHHHHhcCCcceeehhhcCceeeecC-CCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCC
Confidence 999999999999999999999888777765 37888999999999999999999999999999999997766665543
Q ss_pred -CccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 023332 247 -NFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQRS 281 (284)
Q Consensus 247 -~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~~ 281 (284)
.+|++++|. .+++++.+++..++.......+|..
T Consensus 196 g~~d~~~~ns-~~lee~~kel~~~~~~~~~~~~~~~ 230 (231)
T KOG0707|consen 196 GSFDLVIVNS-DRLEEAYKELEIFISSDDKESHQHR 230 (231)
T ss_pred ccccceecCC-CchhhhhhhhhhhhhHHHHhhhhcc
Confidence 599999996 6799999999999999887777654
No 10
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.91 E-value=1.2e-22 Score=169.28 Aligned_cols=180 Identities=23% Similarity=0.335 Sum_probs=141.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
|.+++|+||||||||||+++|++.++ .+......+++... ..+.++.++..++|.+++..+.+.+++.++++.||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPAS---AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccc---hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 67899999999999999999988764 22222233333221 234567778888899888888888888999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCc
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~ 248 (284)
+. .++..++.|..||+++.......+++.++....+||+++| .+++.+||..|.+.+++.+.+|+..+.. ...+
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~~~a 152 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRLENRGRENASEINARLARAAR----YQPQ 152 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHHhCCCCHHHHHHHHHHhhh----hccC
Confidence 99 5899999999999999887777888877667778899986 7999999999987787888888865422 1247
Q ss_pred cEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 249 DYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 249 D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
|++++|+++++++++++|.+++..-+.-+|
T Consensus 153 d~~vi~~~~s~ee~~~~i~~~l~~~~~~~~ 182 (186)
T PRK10078 153 DCHTLNNDGSLRQSVDTLLTLLHLSQKEKH 182 (186)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHhhcCcccc
Confidence 877777778999999999999977655444
No 11
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.89 E-value=1.8e-21 Score=153.10 Aligned_cols=181 Identities=28% Similarity=0.364 Sum_probs=154.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC---CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD---SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~---~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
.|++|.|+||||+||.||+......+. .+.++.-.++|.... .+++...++..+|.....++.|...|..++..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~a---g~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADA---GGEDHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCC---CcccccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 599999999999999999999977654 477787888876544 34666779999999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV 245 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~ 245 (284)
||.+. +|...++.|..||+.+....+.+++..| ....+|.+.++ .++|.+||.+|++++.++|..|+....... .
T Consensus 81 Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrry-~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~--~ 155 (192)
T COG3709 81 YGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRY-PQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT--A 155 (192)
T ss_pred ccCch-hHHHHHhCCCEEEEeccHhhhHHHHHhh-hcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc--c
Confidence 99997 6778899999999999999999999999 57888999997 599999999999999999999998764332 2
Q ss_pred CCccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 246 KNFDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 246 ~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
...|.+.+|++|.++.+.+++...+.+....+
T Consensus 156 ~~~dv~~idNsG~l~~ag~~ll~~l~~~~a~~ 187 (192)
T COG3709 156 GPGDVTTIDNSGELEDAGERLLALLHQDSAVK 187 (192)
T ss_pred CCCCeEEEcCCCcHHHHHHHHHHHHHhhcccc
Confidence 47788889999999999999999998665443
No 12
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.87 E-value=1.4e-20 Score=155.70 Aligned_cols=175 Identities=26% Similarity=0.346 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCC---ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDS---LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
|++++|+|||||||||+++.|+..++. ..+...+++|+. ..+|.++++++.+.|..+...+.|.......++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPA---SAGGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCC---CCCCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 468999999999999999999887642 345556666653 34578889999999988877777877777778889
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccC
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK 246 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~ 246 (284)
|... .+...+..|..||+++.......+.+.+ ....+||++++ .+++.+||..|.+..++.+..++.....+. . .
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~-~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~-~-~ 152 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRY-PNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARSARFA-A-A 152 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHC-CCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHHhhcc-c-c
Confidence 9987 5777888999999999877666666655 56788999986 699999999998877778888886443221 1 4
Q ss_pred CccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 247 NFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 247 ~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+|++++++++++++++++|.+++.+
T Consensus 153 ~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 153 PADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 57888777778999999999998864
No 13
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.86 E-value=7.9e-21 Score=150.49 Aligned_cols=119 Identities=45% Similarity=0.773 Sum_probs=110.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
+|+|+||+|||||||++.|++.++ .+..++++++|+++.++.+|.+|++++...|.+++.++.|+++..+.++.||...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 479999999999999999998865 5678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecC
Q 023332 171 KQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p 211 (284)
+.+++.++.|+.+|+|.+.+++..++..+ ..+.+||+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~-~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSY-PDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcC-CCeEEEEEECC
Confidence 99999999999999999999999999876 88899999997
No 14
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=99.83 E-value=2e-19 Score=164.69 Aligned_cols=184 Identities=28% Similarity=0.383 Sum_probs=158.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.+.+.++|+|+.|+|-..+-+.|....+ .|...+.+++|.++.++.+|..|+|++.++|.+.+.++.|++++++.+++|
T Consensus 338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlY 417 (542)
T KOG0609|consen 338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLY 417 (542)
T ss_pred cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccc
Confidence 5678999999999999999999977655 788899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc--------cCCHHHHHHHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK--------TESREELLVRIATA 238 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~--------~~~~~~i~~rl~~~ 238 (284)
|+..+.+..+++.|+.||+|...+.+..++..- +.+++||+.+|+.+.+++ +++-. ..+++++++.++..
T Consensus 418 GTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~E-f~PyVIFI~pP~~~~~r~-~r~~~~~~~~~~~~~~d~~Lq~i~~eS 495 (542)
T KOG0609|consen 418 GTSLDSVRNVIASGKICVLDVEPQALKVLRTAE-FKPYVIFIAPPSLEELRA-LRKVAVMSTIVAKQFTDEDLQEIIDES 495 (542)
T ss_pred cchHHHHHHHHHhCCEEEEecCHHHhhhhhhhc-ccceEEEecCCCchhHHH-HhhhccccccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999998775 889999999998665533 32221 13566665555543
Q ss_pred HH-HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 239 RE-EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 239 ~~-e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
.. +-.+.+.||.+|+|++ ++.+++++..++++...
T Consensus 496 ~~ie~~yghyfD~iIvN~d--ld~t~~eL~~~iekl~t 531 (542)
T KOG0609|consen 496 ARIEQQYGHYFDLIIVNSD--LDKTFRELKTAIEKLRT 531 (542)
T ss_pred HHHHHHhhhheeEEEEcCc--HHHHHHHHHHHHHHhcc
Confidence 33 4556789999999998 99999999999998754
No 15
>PRK08356 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-17 Score=139.75 Aligned_cols=178 Identities=20% Similarity=0.228 Sum_probs=124.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
.++|+|+||+||||||+++.|.+ + ++. .++.+++.+...+..+.+++|++...+..+.....++++..+.++.||..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~-g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K-GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C-CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 46899999999999999999965 4 344 55666665556667788999998888888778889999999999999975
Q ss_pred H--HHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC------CHHHHHHHHHHHHH-
Q 023332 170 K--KQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE------SREELLVRIATARE- 240 (284)
Q Consensus 170 ~--~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~------~~~~i~~rl~~~~~- 240 (284)
. ..+.+.+..+..+++|+- ....+..........+|++++| .+++.+||..|... +.+.+..+......
T Consensus 82 ~~~~~~~~~~~~~~~ividG~-r~~~q~~~l~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l 159 (195)
T PRK08356 82 ILIRLAVDKKRNCKNIAIDGV-RSRGEVEAIKRMGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL 159 (195)
T ss_pred HHHHHHHHHhccCCeEEEcCc-CCHHHHHHHHhcCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence 3 222223333446888865 3333332211122478999997 59999999999765 34444333322221
Q ss_pred --HhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 241 --EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 241 --e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..++...+|++|+|+ ++++++.++|.+++...
T Consensus 160 ~~~~~~~~~aD~vI~N~-~~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 160 YHTTKLKDKADFVIVNE-GTLEELRKKVEEILREL 193 (195)
T ss_pred hhhhhHHHhCcEEEECC-CCHHHHHHHHHHHHHHh
Confidence 112235799999885 78999999999998764
No 16
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.64 E-value=5.2e-15 Score=122.03 Aligned_cols=164 Identities=12% Similarity=0.064 Sum_probs=97.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCCCCCceeEecCHHHHHH---hh-cccchhhhh-hhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLT---MI-DKNELLEYA-LVY 162 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~-~~~ 162 (284)
+|++|+|+|+|||||||+++.|++..+. +..+..+ ++.......+.. .+ .++.+.++. .+.
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD-------------SFIEALPLKCQDAEGGIEFDGDGGVSPGPEF 67 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc-------------HHHHhcChhhcccccccccCccCCcccchHH
Confidence 3789999999999999999999887542 1111011 011000000000 00 000000000 123
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecHH---HHHH-HHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDIQ---GAQT-LRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATA 238 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~~---~~~~-l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~ 238 (284)
++.|+...+.+...++.|.+||+|..+. .... +....+.+..+|++.+| .+++.+|+.+|++.... + ...+
T Consensus 68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~-~~~l~~R~~~R~~~~~~-~---~~~~ 142 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCP-GEVAEGRETARGDRVPG-Q---ARKQ 142 (175)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhcCCccch-H---HHHH
Confidence 4566777778888999999999998663 2222 22333457888999998 59999999999754221 1 1111
Q ss_pred HHHhhccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 239 REEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 239 ~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.........+|++|.++..++++++++|.+.|
T Consensus 143 ~~~~~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 143 ARVVHAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred HHHhcCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 22222234568877666568999999998765
No 17
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.60 E-value=4.6e-14 Score=118.94 Aligned_cols=174 Identities=20% Similarity=0.205 Sum_probs=102.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc--ccchhhh---hhhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID--KNELLEY---ALVYG 163 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~ 163 (284)
+|++|+|.|++||||||+++.|++.+...+. ....++.|. +...| +.+..... ...+..+ ..+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~-~~~~~~~p~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGR-DVVFTREPG-GTPLG--------EKLRELLLDPNEEMDDKTELLLFYA 71 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC-ceeEeeCCC-CChHH--------HHHHHHHhccccCCCHHHHHHHHHH
Confidence 4889999999999999999999887642221 112222232 11111 12222211 0111111 11122
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh---CCCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL---GDSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~---g~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
+.|......+...+..|..||+|-.+ .....+...+ ..++.+|++++| .+++.+|+.+|+.
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~-~~~~~~Rl~~R~~ 150 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVP-PEVGLARIRARGE 150 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 33444444566677889999999221 1222333322 346789999998 5999999999974
Q ss_pred CCH-----HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 226 ESR-----EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 226 ~~~-----~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
... ..+.+++...+..+......+++++|++++++++.++|.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 151 LDRIEQEGLDFFERVREGYLELAEKEPERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 221 134455554444443333456778888899999999999998754
No 18
>PRK06762 hypothetical protein; Provisional
Probab=99.59 E-value=4.8e-14 Score=115.13 Aligned_cols=152 Identities=14% Similarity=0.091 Sum_probs=94.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+.+|+|+|++||||||+++.|++.++ ...++ +.+.+............ ...+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i---------------------~~D~~r~~l~~~~~~~~----~~~~~~ 56 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLV---------------------SQDVVRRDMLRVKDGPG----NLSIDL 56 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEe---------------------cHHHHHHHhccccCCCC----CcCHHH
Confidence 67999999999999999999998774 12222 12222211100000000 000001
Q ss_pred CHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC---CHHHHHHHHHHHH
Q 023332 169 PKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE---SREELLVRIATAR 239 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~---~~~~i~~rl~~~~ 239 (284)
....++..++.|..||+|+.+ ..+..+...++.+..+||+++| .+++.+|+.+|... .++.+..++..
T Consensus 57 ~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap-~e~~~~R~~~R~~~~~~~~~~l~~~~~~-- 133 (166)
T PRK06762 57 IEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLS-FEETLRRHSTRPKSHEFGEDDMRRWWNP-- 133 (166)
T ss_pred HHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHhcccccccCCHHHHHHHHhh--
Confidence 112334457789999999875 2355566666667889999997 68999999999652 34444444332
Q ss_pred HHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 240 EEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 240 ~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
......++.++++++.++++++.+|...+.
T Consensus 134 --~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 134 --HDTLGVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred --cCCcCCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 222234688888887899999999988764
No 19
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.59 E-value=1.6e-14 Score=121.10 Aligned_cols=174 Identities=20% Similarity=0.231 Sum_probs=107.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCC--------CCCcee----EecCHHHHHHhhcccc-hh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGE--------ENGKDY----YFVSKEEFLTMIDKNE-LL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~--------~~~~~~----~~~~~~~~~~~~~~~~-~~ 156 (284)
.+|+|+|++||||||+++.|.+ ++...+..+...+... .+. ..|.++ ..+++..+...+.++. .+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 81 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEAR 81 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHH
Confidence 5799999999999999999988 5433333333332211 010 012221 1255555555543222 11
Q ss_pred hhhhhcccccCCCHHHHHHHHHcC---CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 157 EYALVYGDYKGIPKKQIREYMAKG---YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 157 ~~~~~~~~~yg~~~~~i~~~l~~g---~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
.+.+ .-++....+.+.+.++.. ..+|+|+.......+... .+.+|++++| .+++.+|+.+|++.+.+++..
T Consensus 82 ~~L~--~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~~---~D~vi~V~a~-~e~~~~Rl~~R~~~s~e~~~~ 155 (194)
T PRK00081 82 KKLE--AILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEKL---VDRVLVVDAP-PETQLERLMARDGLSEEEAEA 155 (194)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchhh---CCeEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 1111 001111112333333332 578888876433333333 2588999997 699999999998888889999
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
|+..+....++...+|++|.|+ ++++++.+++..+++.
T Consensus 156 ri~~Q~~~~~~~~~ad~vI~N~-g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 156 IIASQMPREEKLARADDVIDNN-GDLEELRKQVERLLQE 193 (194)
T ss_pred HHHHhCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHh
Confidence 9887766555566789988776 7999999999988754
No 20
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=1.8e-14 Score=122.14 Aligned_cols=180 Identities=21% Similarity=0.263 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CC--------CCCCceeE--------ecCHHHHHHhhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PG--------EENGKDYY--------FVSKEEFLTMID 151 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~--------~~~~~~~~~~~~ 151 (284)
.+.+|+|+|++||||||+++.|.+. +...+..+...+... .+ ...|.++. .+++..+...+.
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~~-g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf 82 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAEM-GCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVF 82 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC-CCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHh
Confidence 3578999999999999999999874 322222221111100 00 00111111 133333332222
Q ss_pred -ccchhhhhh--hcccccCCCHHHHHHHHHcCC-cEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC
Q 023332 152 -KNELLEYAL--VYGDYKGIPKKQIREYMAKGY-DIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES 227 (284)
Q Consensus 152 -~~~~~~~~~--~~~~~yg~~~~~i~~~l~~g~-~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~ 227 (284)
+...+...+ ++..++....+.++.....+. .+|+|+..-.-..... ..+.+|++.+| .+++.+|+.+|+..+
T Consensus 83 ~~~~~~~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~---~~d~ii~V~a~-~e~~~~Rl~~R~~~s 158 (208)
T PRK14731 83 SDPEKLGALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDA---GLDFIVVVAAD-TELRLERAVQRGMGS 158 (208)
T ss_pred CCHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchh---cCCeEEEEECC-HHHHHHHHHHcCCCC
Confidence 222222211 222222222333444444553 5666655321111111 23577888987 699999999999888
Q ss_pred HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 228 REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 228 ~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
.+.+.+|++.+..+.++...+|++|+|+ ++++++.+++..+++...
T Consensus 159 ~e~~~~Ri~~q~~~~~~~~~ad~vI~N~-g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 159 REEIRRRIAAQWPQEKLIERADYVIYNN-GTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HHHHHHHHHHcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHHH
Confidence 8999999987766555556789998876 899999999999987654
No 21
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=3.3e-14 Score=119.46 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=111.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCC-C-------CCCCcee---EecCHHHHHHhhcccc-h
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP-G-------EENGKDY---YFVSKEEFLTMIDKNE-L 155 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~-~-------~~~~~~~---~~~~~~~~~~~~~~~~-~ 155 (284)
..+.+|+|+|..||||||++++|++.++...+..+...+.... + ...|.++ ..+++..+...+.+.. .
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEA 83 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHH
Confidence 3467899999999999999999987655333333322221100 0 0112222 1244444444432211 1
Q ss_pred hhhhhhcccccCCCHHHHHHHHHc--CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 156 LEYALVYGDYKGIPKKQIREYMAK--GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 156 ~~~~~~~~~~yg~~~~~i~~~l~~--g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
....+ .-++....+.+.+.+.. ...+|+|+..-........ ...+.+|++.+| .++..+|+.+|+..+.+++.+
T Consensus 84 ~~~Le--~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~-~~~D~vi~V~a~-~e~ri~Rl~~Rd~~s~~~a~~ 159 (204)
T PRK14733 84 KKWLE--DYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRHY-DYLKKVIVIKAD-LETRIRRLMERDGKNRQQAVA 159 (204)
T ss_pred HHHHH--hhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCchh-hhCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 11111 00111112233333332 2467788755322111000 123578889997 699999999998889999999
Q ss_pred HHHHHHHHhhccCCccEEEECCCC-CHHHHHHHHHHHHHHHHh
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEG-KLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~-~~e~~~~~i~~~i~~~~~ 275 (284)
|++.+....++...+|+||.|+ | +++++.+++.++++....
T Consensus 160 ri~~Q~~~eek~~~aD~VI~N~-g~~~~~l~~~~~~~~~~~~~ 201 (204)
T PRK14733 160 FINLQISDKEREKIADFVIDNT-ELTDQELESKLITTINEITN 201 (204)
T ss_pred HHHhCCCHHHHHHhCCEEEECc-CCCHHHHHHHHHHHHHHHHh
Confidence 9998887777778899999887 7 999999999999988754
No 22
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.57 E-value=2e-14 Score=120.51 Aligned_cols=178 Identities=18% Similarity=0.180 Sum_probs=106.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCC-CC--------CCCcee----EecCHHHHHHhhccc-chhh
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP-GE--------ENGKDY----YFVSKEEFLTMIDKN-ELLE 157 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~-~~--------~~~~~~----~~~~~~~~~~~~~~~-~~~~ 157 (284)
+|+|+|++||||||+++.|.+. +...+..+...+.... +. ..|.++ ..+++..+...+.++ ....
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~-g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~ 79 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL-GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLK 79 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC-CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHH
Confidence 4899999999999999999764 4333333333222110 10 112222 124455444443221 1111
Q ss_pred hhh--hcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH
Q 023332 158 YAL--VYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI 235 (284)
Q Consensus 158 ~~~--~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl 235 (284)
..+ ++..++....+.+.. ...+..+|+|...-....+... .+.+|++.+| .++..+|+.+|++.+.+++..|+
T Consensus 80 ~L~~i~hP~v~~~~~~~~~~-~~~~~~vi~e~pLL~E~~~~~~---~D~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri 154 (196)
T PRK14732 80 ALNELIHPLVRKDFQKILQT-TAEGKLVIWEVPLLFETDAYTL---CDATVTVDSD-PEESILRTISRDGMKKEDVLARI 154 (196)
T ss_pred HHHHHhhHHHHHHHHHHHHH-HhcCCcEEEEeeeeeEcCchhh---CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 111111111111111 2235577788755322222222 3688999997 69999999999888889999999
Q ss_pred HHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 236 ATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
..+....++...+|++|.|+ ++++++.+++..+++....+
T Consensus 155 ~~Q~~~~~k~~~aD~vI~N~-~~~~~l~~~v~~l~~~~~~~ 194 (196)
T PRK14732 155 ASQLPITEKLKRADYIVRND-GNREGLKEECKILYSTLLKK 194 (196)
T ss_pred HHcCCHHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHHHHh
Confidence 87765555667899998877 79999999999998776544
No 23
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.57 E-value=2.1e-14 Score=120.40 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=102.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCC--------CCCcee----E-ecCHHHHHHhhccc-ch
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGE--------ENGKDY----Y-FVSKEEFLTMIDKN-EL 155 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~--------~~~~~~----~-~~~~~~~~~~~~~~-~~ 155 (284)
++|+|+|++||||||+++.|++.++...+..+...+... .+. ..|..+ . .+++..+...+..+ ..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 469999999999999999999876544444333332210 010 011111 1 23444444332211 11
Q ss_pred hhhhhhcccccCCCHHHHHHHHH---cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHH
Q 023332 156 LEYALVYGDYKGIPKKQIREYMA---KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELL 232 (284)
Q Consensus 156 ~~~~~~~~~~yg~~~~~i~~~l~---~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~ 232 (284)
..+. ..-++....+.+.+.+. ....+|+|+.......+... .+.+|+|++| .+++.+|+.+|++.+.+++.
T Consensus 82 ~~~l--~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~~---~D~ii~V~a~-~e~r~~Rl~~R~g~s~e~~~ 155 (195)
T PRK14730 82 RRWL--ENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTDL---CSEIWVVDCS-PEQQLQRLIKRDGLTEEEAE 155 (195)
T ss_pred HHHH--HHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHhC---CCEEEEEECC-HHHHHHHHHHcCCCCHHHHH
Confidence 1111 00011111122222222 23567888766432233332 3678899997 69999999999888888888
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 233 VRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 233 ~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
.|+..+....++...+|+||.|+ ++++++.+++.++++
T Consensus 156 ~ri~~Q~~~~~k~~~aD~vI~N~-g~~e~l~~qv~~~l~ 193 (195)
T PRK14730 156 ARINAQWPLEEKVKLADVVLDNS-GDLEKLYQQVDQLLK 193 (195)
T ss_pred HHHHhCCCHHHHHhhCCEEEECC-CCHHHHHHHHHHHHh
Confidence 88887655444556789988776 899999999988763
No 24
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.57 E-value=7.3e-14 Score=116.03 Aligned_cols=171 Identities=18% Similarity=0.269 Sum_probs=101.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
..+|+|+|++||||||+++.|++.++.......+..|....+ +.. . ...+......+.+.....+. ...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~---~~~---~-~~~~~~~~~~~~~~~~~~~~----~~l 71 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVAS---GSE---R-GKQLQAIMESGDLVPLDTVL----DLL 71 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc---CCH---H-HHHHHHHHHCCCCCCHHHHH----HHH
Confidence 468999999999999999999987753333332322221100 000 0 01111111222222111111 111
Q ss_pred HHHHHHHHHcCCcEEEEecHHHH---HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDIQGA---QTLRRVLGDSAVFVFLMAESETALVERLVERKT------ESREELLVRIATARE 240 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~---~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~rl~~~~~ 240 (284)
.+.+...+..|..+|+|+.+... ..+...++.++.+|++++| .+++.+|+..|.. ++++.+.+|+...+.
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~ 150 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCS-EDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYK 150 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHH
Confidence 22233345568899999976433 2333344456789999997 5999999988863 256778888876554
Q ss_pred Hh----hc-cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 241 EI----KH-VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 241 e~----~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.. .+ ....+++++|++++++++.++|...++.
T Consensus 151 ~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 187 (188)
T TIGR01360 151 ATEPVIAYYETKGKLRKINAEGTVDDVFLQVCTAIDK 187 (188)
T ss_pred hhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 32 11 1233677889989999999999998864
No 25
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.54 E-value=4.3e-14 Score=118.99 Aligned_cols=181 Identities=21% Similarity=0.227 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCC--------CCCCcee----EecCHHHHHHhhcc-cchh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPG--------EENGKDY----YFVSKEEFLTMIDK-NELL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~--------~~~~~~~----~~~~~~~~~~~~~~-~~~~ 156 (284)
.+|+|+|++||||||+++.|+. ++...+..+...+.. ..+ ...|..+ ..+++..+...+.. ....
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~ 80 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQT 80 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHH
Confidence 4799999999999999999987 343333333222210 000 0012211 12444444433221 1111
Q ss_pred hhhh--hcccccCCCHHHHHHHHHcC-CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 157 EYAL--VYGDYKGIPKKQIREYMAKG-YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 157 ~~~~--~~~~~yg~~~~~i~~~l~~g-~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
...+ .+...+....+.+......| ..++++...-....+.. ..+.+|++++| .+++.+|+.+|.+.+.+++..
T Consensus 81 ~~le~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~---~~D~vi~V~a~-~e~ri~Rl~~R~g~s~e~~~~ 156 (200)
T PRK14734 81 ALLNAITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDR---KMDLVVVVDVD-VEERVRRLVEKRGLDEDDARR 156 (200)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccc---cCCeEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 1111 11112111122222223344 45666665522222222 23688999997 699999999997778889999
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
|++.+....++...+|++|.|+ ++++++.+++..+++....++
T Consensus 157 ri~~Q~~~~~k~~~ad~vI~N~-g~~e~l~~~v~~~~~~~~~~~ 199 (200)
T PRK14734 157 RIAAQIPDDVRLKAADIVVDNN-GTREQLLAQVDGLIAEILSRV 199 (200)
T ss_pred HHHhcCCHHHHHHhCCEEEECc-CCHHHHHHHHHHHHHHHHhcc
Confidence 9988776655567889887766 899999999999988776553
No 26
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.52 E-value=2.1e-13 Score=117.63 Aligned_cols=181 Identities=18% Similarity=0.110 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCCC--------CCCcee----EecCHHHHHHhhcccc-hh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPGE--------ENGKDY----YFVSKEEFLTMIDKNE-LL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~~--------~~~~~~----~~~~~~~~~~~~~~~~-~~ 156 (284)
.+|+|+|..||||||++++|.+.++...+..+...+.. ..+. ..|..+ ..+++..+...+..+. ..
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~ 81 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQAR 81 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 47999999999999999999976543333333333321 0010 011111 2255555555433221 11
Q ss_pred hhh--hhcccccCCCHHHHHH--------HH-HcC-CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 157 EYA--LVYGDYKGIPKKQIRE--------YM-AKG-YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 157 ~~~--~~~~~~yg~~~~~i~~--------~l-~~g-~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
... .++..++....+.+.+ .+ ..+ ..||+|+..-....+... .-+.+|++.+| .+++.+||.+|+
T Consensus 82 ~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~~~--~~D~iv~V~a~-~e~ri~RL~~R~ 158 (244)
T PTZ00451 82 RALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTFTY--FVSASVVVSCS-EERQIERLRKRN 158 (244)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCchhh--cCCeEEEEECC-HHHHHHHHHHcC
Confidence 111 1122111111111211 01 122 378888766422222111 23678889997 699999999998
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCccEEEECCC-CCHHHHHHHHHHHHHHHH
Q 023332 225 TESREELLVRIATAREEIKHVKNFDYVVVNAE-GKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 225 ~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~-~~~e~~~~~i~~~i~~~~ 274 (284)
+.+.+++.+|++.+....++...+|+||.|++ |+++++.+++.+++....
T Consensus 159 g~s~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 159 GFSKEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred CCCHHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 88899999999887766666778999988763 689999999999987754
No 27
>PRK14527 adenylate kinase; Provisional
Probab=99.52 E-value=4.1e-13 Score=112.28 Aligned_cols=168 Identities=18% Similarity=0.241 Sum_probs=97.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
..+|++|+|+||+||||||+++.|++.++..+....+..|..... +..+ .......+..+......
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~---~~~~----~~~~~~~~~~g~~~p~~------- 68 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR---GTEL----GQRAKPIMEAGDLVPDE------- 68 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc---CcHH----HHHHHHHHHcCCCCcHH-------
Confidence 456899999999999999999999988763333332322221000 0000 00011111111111100
Q ss_pred CCCHHHHHHHHHc--CCcEEEEecHHH------HHHHHHHhCCCe-EEEEEecCCHHHHHHHHHhhc------cCCHHHH
Q 023332 167 GIPKKQIREYMAK--GYDIILRVDIQG------AQTLRRVLGDSA-VFVFLMAESETALVERLVERK------TESREEL 231 (284)
Q Consensus 167 g~~~~~i~~~l~~--g~~vvld~~~~~------~~~l~~~~g~~~-~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i 231 (284)
.....+.+.+.. +..+|+|+.+.. +..+....|..+ .+|++++| .+++.+|+.+|. +++++.+
T Consensus 69 -~~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~r~dd~~~~~ 146 (191)
T PRK14527 69 -LILALIRDELAGMEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVP-DEELIRRIVERARQEGRSDDNEETV 146 (191)
T ss_pred -HHHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCcccCCCCCCCHHHH
Confidence 011223333433 456999986522 222333344444 57899997 599999998874 3456778
Q ss_pred HHHHHHHHHHhhc-----cCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 232 LVRIATAREEIKH-----VKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 232 ~~rl~~~~~e~~~-----~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.+|++.+...... ....-++.+|++++++++.++|...+
T Consensus 147 ~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 147 RRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 8888776654331 11223677899999999999998765
No 28
>PLN02422 dephospho-CoA kinase
Probab=99.52 E-value=1.6e-13 Score=117.20 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CC--------CCCCcee----EecCHHHHHHhhcccc-hh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PG--------EENGKDY----YFVSKEEFLTMIDKNE-LL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~----~~~~~~~~~~~~~~~~-~~ 156 (284)
++|+|+|.+||||||+++.|.+ ++...+..+...+... .+ ...|.++ ..+++..+...+.++. ..
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 3699999999999999999985 4433333333333210 00 0012111 1245555544433221 11
Q ss_pred hhhh--hcccccCCCHHHHHHHHHcC-CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 157 EYAL--VYGDYKGIPKKQIREYMAKG-YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 157 ~~~~--~~~~~yg~~~~~i~~~l~~g-~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
...+ ++..++......+.+....+ ..+|+|+..-....+... -+.+|++++| .+++.+|+.+|++.+.+++.+
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~~---~D~vI~V~a~-~e~ri~RL~~R~g~s~eea~~ 156 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDKW---TKPVVVVWVD-PETQLERLMARDGLSEEQARN 156 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhhh---CCEEEEEECC-HHHHHHHHHHcCCCCHHHHHH
Confidence 1111 12211111111111111123 467788766432223222 3688999997 699999999998888899999
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
|++.+....++...+|++|.|+ |+++++.+++.++++...
T Consensus 157 Ri~~Q~~~eek~~~AD~VI~N~-gs~e~L~~qv~~ll~~l~ 196 (232)
T PLN02422 157 RINAQMPLDWKRSKADIVIDNS-GSLEDLKQQFQKVLEKIR 196 (232)
T ss_pred HHHHcCChhHHHhhCCEEEECC-CCHHHHHHHHHHHHHHHh
Confidence 9987766555567889988777 899999999999987753
No 29
>PRK04040 adenylate kinase; Provisional
Probab=99.50 E-value=1e-12 Score=109.52 Aligned_cols=166 Identities=22% Similarity=0.314 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEee-eccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVT-ATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
+++|+|+|++||||||+++.|++.++ .+..+.. +..+.. . ...| ...+++++..+-.. ...++..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~-a-~~~g---~~~~~d~~r~l~~~-~~~~~~~------- 68 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEV-A-KEEG---LVEHRDEMRKLPPE-EQKELQR------- 68 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHH-H-HHcC---CCCCHHHHhhCChh-hhHHHHH-------
Confidence 57899999999999999999988874 2222111 000000 0 0000 01112222211000 0000000
Q ss_pred CCHHHHHHHHHcCCcEEEEecHH-----H-----HHHHHHHhCCCeEEEEEecCCHHHHHHHHHh----hccCCHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQ-----G-----AQTLRRVLGDSAVFVFLMAESETALVERLVE----RKTESREELLV 233 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~-----~-----~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~----R~~~~~~~i~~ 233 (284)
...+.+.+ ...+..+|+|+.+. + -..+.+.. .+..+|++.+|+.+++.+|+.. |..++.+.+..
T Consensus 69 ~a~~~i~~-~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l-~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e~I~~ 146 (188)
T PRK04040 69 EAAERIAE-MAGEGPVIVDTHATIKTPAGYLPGLPEWVLEEL-NPDVIVLIEADPDEILMRRLRDETRRRDVETEEDIEE 146 (188)
T ss_pred HHHHHHHH-hhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhc-CCCEEEEEeCCHHHHHHHHhcccccCCCCCCHHHHHH
Confidence 00111221 23456699998551 1 11222334 4566777787766676777754 66677888888
Q ss_pred HHHHHHHHhh----ccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 234 RIATAREEIK----HVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 234 rl~~~~~e~~----~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
+++.+..+.. ....++++|+|++|.+++++++|.++|
T Consensus 147 ~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 147 HQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 8777665432 124589999999988999999999876
No 30
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.49 E-value=1.4e-12 Score=106.03 Aligned_cols=156 Identities=15% Similarity=0.148 Sum_probs=88.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC--CCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM--RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
|+|+||+||||||+++.|++.++...+. .+..... ......+..+...+. ..+ +....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~-~D~~~~~~~~~~~~~~~~~~~~~~------------~~~-------~~~~~ 60 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE-GDDLHPAANIEKMSAGIPLNDDDR------------WPW-------LQNLN 60 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe-CccccChHHHHHHHcCCCCChhhH------------HHH-------HHHHH
Confidence 5789999999999999999887532222 1111000 000000000000000 000 11112
Q ss_pred HHHHHHHHcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHHHHHHHHHHHHHhhccC
Q 023332 171 KQIREYMAKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREELLVRIATAREEIKHVK 246 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~e~~~~~ 246 (284)
+.+...+..|..+|++.++ ..........+....+||+++| .+++.+|+..|... ..+.+..++... +.....
T Consensus 61 ~~~~~~l~~~~~~Vi~~t~~~~~~r~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~--~~~~~~ 137 (163)
T TIGR01313 61 DASTAAAAKNKVGIITCSALKRHYRDILREAEPNLHFIYLSGD-KDVILERMKARKGHFMKADMLESQFAAL--EEPLAD 137 (163)
T ss_pred HHHHHHHhcCCCEEEEecccHHHHHHHHHhcCCCEEEEEEeCC-HHHHHHHHHhccCCCCCHHHHHHHHHHh--CCCCCC
Confidence 2344567778877888765 2222222344567788999997 69999999999742 233343333321 111122
Q ss_pred CccEEEECCCCCHHHHHHHHHHHHH
Q 023332 247 NFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 247 ~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
..+++++|++++++++.+++.+++-
T Consensus 138 e~~~~~id~~~~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 138 ETDVLRVDIDQPLEGVEEDCIAVVL 162 (163)
T ss_pred CCceEEEECCCCHHHHHHHHHHHHh
Confidence 3578899999999999999888763
No 31
>PLN02200 adenylate kinase family protein
Probab=99.48 E-value=2.4e-12 Score=110.87 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=103.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
.+..+.+|+|+|++||||||+++.|++.++..++...+..|+..... .. ....+...+..+.......
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~---s~----~~~~i~~~~~~G~~vp~e~----- 106 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASN---SE----HGAMILNTIKEGKIVPSEV----- 106 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhcc---Ch----hHHHHHHHHHcCCCCcHHH-----
Confidence 35567899999999999999999999988654554445444321110 00 0001111111111111100
Q ss_pred cCCCHHHHHHHHH--cCCcEEEEecHHHHHH---HHHHhC-CCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHH
Q 023332 166 KGIPKKQIREYMA--KGYDIILRVDIQGAQT---LRRVLG-DSAVFVFLMAESETALVERLVERK----TESREELLVRI 235 (284)
Q Consensus 166 yg~~~~~i~~~l~--~g~~vvld~~~~~~~~---l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl 235 (284)
....+.+.+. .+..+|+|+.+....+ +....+ .++.+|++++| .+++.+|+..|. .++.+.+.+|+
T Consensus 107 ---~~~~l~~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~-~e~~~~Rl~~R~~~r~dd~~e~~~~Rl 182 (234)
T PLN02200 107 ---TVKLIQKEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCP-EEEMVKRVLNRNQGRVDDNIDTIKKRL 182 (234)
T ss_pred ---HHHHHHHHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHcCcCCCCCCCHHHHHHHH
Confidence 0011222222 2456999997743322 222222 35688999997 589999998874 33457777777
Q ss_pred HHHHHHh----hcc-CCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 236 ATAREEI----KHV-KNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 236 ~~~~~e~----~~~-~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+.+.... ++. ....++.+|++++++++.+.+.+.+..+..
T Consensus 183 ~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 183 KVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 7655432 112 123467889989999999999999988654
No 32
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.47 E-value=1.9e-12 Score=108.23 Aligned_cols=170 Identities=19% Similarity=0.200 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcc------cchhhhhhhccc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK------NELLEYALVYGD 164 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 164 (284)
++|+|.|++||||||+++.|++.+...+... ...+.+..... | ..+...... ........+..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v-~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEV-VLTREPGGTPI-G--------EAIRELLLDPEDEKMDPRAELLLFAAD 70 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEeCCCCCch-H--------HHHHHHHhccCccCCCHHHHHHHHHHH
Confidence 4799999999999999999998874222211 11222221110 0 111111110 011111111122
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHH---HhCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRR---VLGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~---~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
.+....+.+...+..|..||+|-.. ..+..+.. ....++.+||+++| .+++.+|+.+|+..
T Consensus 71 r~~~~~~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~ 149 (200)
T cd01672 71 RAQHVEEVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDID-PEVGLARIEARGRD 149 (200)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcCCc
Confidence 2222233445556788999999211 11222221 11246788999997 59999999999764
Q ss_pred CH-----HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 227 SR-----EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 227 ~~-----~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
.. ..+.+++...+..+......+++++|++.+++++.++|.+.|.
T Consensus 150 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~e~i~~~i~~~i~ 199 (200)
T cd01672 150 DRDEQEGLEFHERVREGYLELAAQEPERIIVIDASQPLEEVLAEILKAIL 199 (200)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHh
Confidence 32 3344455444443332223467888998999999999998875
No 33
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.47 E-value=1.7e-12 Score=107.61 Aligned_cols=163 Identities=20% Similarity=0.274 Sum_probs=94.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
+|+|+|++||||||+++.|++.++..++..++..|+.... +... .......+..+....... ...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~---~~~~----~~~~~~~~~~g~~~~~~~--------~~~ 65 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS---GSEN----GELIESMIKNGKIVPSEV--------TVK 65 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc---CChH----HHHHHHHHHCCCcCCHHH--------HHH
Confidence 4899999999999999999998875455444544432211 0000 001111111111111110 011
Q ss_pred HHHHHHHc--CCcEEEEecHHHH------HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHHHHHH
Q 023332 172 QIREYMAK--GYDIILRVDIQGA------QTLRRVLGDSAVFVFLMAESETALVERLVERKT------ESREELLVRIAT 237 (284)
Q Consensus 172 ~i~~~l~~--g~~vvld~~~~~~------~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~rl~~ 237 (284)
.+++.+.. +..+|+|+.+... ..+......++.+|++++| .+++.+|+..|.. ++.+.+.+++..
T Consensus 66 ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~ 144 (183)
T TIGR01359 66 LLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCP-EEVMIKRLLKRGQSSGRVDDNIESIKKRFRT 144 (183)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCCccCCCCCCCHHHHHHHHHH
Confidence 22233322 5789999976322 2222211145578999997 5899999998863 246677777765
Q ss_pred HHHH----hhccCCc-cEEEECCCCCHHHHHHHHHHHH
Q 023332 238 AREE----IKHVKNF-DYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 238 ~~~e----~~~~~~~-D~vivn~~~~~e~~~~~i~~~i 270 (284)
+... .++.... .++.+|++++++++.++|.+++
T Consensus 145 y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 145 YNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 4432 2222222 3677888899999999998775
No 34
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.47 E-value=2e-13 Score=113.82 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=97.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCC--------CCCcee----EecCHHHHHHhhcc-cchhh
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGE--------ENGKDY----YFVSKEEFLTMIDK-NELLE 157 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~--------~~~~~~----~~~~~~~~~~~~~~-~~~~~ 157 (284)
+|+|+|.+||||||+++.|++..+...+..+...+... .+. ..|.++ ..+++..+...+.. ...+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~ 80 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELK 80 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHH
Confidence 48999999999999999998864322333333222110 000 011111 11333333332211 11111
Q ss_pred hhh--hcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH
Q 023332 158 YAL--VYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI 235 (284)
Q Consensus 158 ~~~--~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl 235 (284)
..+ ++...+....+.+.+....|..+|++........+...+ +.+|++++| .+++.+|+.+|.+.+.+.+.+|+
T Consensus 81 ~le~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~---D~vv~V~~~-~~~~~~Rl~~R~~~s~~~~~~r~ 156 (188)
T TIGR00152 81 WLNNLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLC---DRVIVVDVS-PQLQLERLMQRDNLTEEEVQKRL 156 (188)
T ss_pred HHHHhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhC---CEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHH
Confidence 111 111111111122222222345677766443222233333 577889997 69999999999988889999999
Q ss_pred HHHHHHhhccCCccEEEECCCCCHHHHHHHHH
Q 023332 236 ATAREEIKHVKNFDYVVVNAEGKLDVAVKLVE 267 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~ 267 (284)
..+....++...+|++|.|+ ++++++.+++.
T Consensus 157 ~~q~~~~~~~~~ad~vI~N~-~~~e~l~~~~~ 187 (188)
T TIGR00152 157 ASQMDIEERLARADDVIDNS-ATLADLVKQLE 187 (188)
T ss_pred HhcCCHHHHHHhCCEEEECC-CCHHHHHHHHh
Confidence 88765555567799999877 89999988875
No 35
>PRK01184 hypothetical protein; Provisional
Probab=99.46 E-value=1.8e-12 Score=107.57 Aligned_cols=170 Identities=18% Similarity=0.150 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+|++||||||+++ +++.++...+..++..|+.... .+.. .....+...... .... +.... ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~--~~~~---~~~~~~g~~~~~--~~~~--~~~~~---~~ 68 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK--RGLE---PTDENIGKVAID--LRKE--LGMDA---VA 68 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH--cCCC---CCcHHHHHHHHH--HHHH--HChHH---HH
Confidence 479999999999999988 5555543333334444432100 0000 001111111100 0000 00000 00
Q ss_pred HHHHHHH-H-cCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc----CCHHHHHHHHHHHHH--
Q 023332 171 KQIREYM-A-KGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT----ESREELLVRIATARE-- 240 (284)
Q Consensus 171 ~~i~~~l-~-~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~----~~~~~i~~rl~~~~~-- 240 (284)
..+...+ . .+..||+|+.. .....+.+.++....+|++++| .+++.+|+..|.. .+.+.+.++...+..
T Consensus 69 ~~~~~~i~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~-~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~ 147 (184)
T PRK01184 69 KRTVPKIREKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAP-PEVRFERLKKRGRSDDPKSWEELEERDERELSWG 147 (184)
T ss_pred HHHHHHHHhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECC-HHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccC
Confidence 1111122 2 35789999853 3334455555445688999997 5999999998863 235666666655422
Q ss_pred HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 241 EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 241 e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
..+....+|++|.|+ ++++++..++..+++..+.
T Consensus 148 ~~~~~~~ad~vI~N~-~~~~~l~~~v~~~~~~~~~ 181 (184)
T PRK01184 148 IGEVIALADYMIVND-STLEEFRARVRKLLERILR 181 (184)
T ss_pred HHHHHHhcCEEEeCC-CCHHHHHHHHHHHHHHHhc
Confidence 222335689998766 7999999999999886544
No 36
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.46 E-value=3.2e-12 Score=101.32 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|.|.|++||||||+++.|+++++...+....+.|... ...| ++..+|.+......-++.. . .
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A--~e~g-----msl~ef~~~AE~~p~iD~~--------i-D 64 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMA--RERG-----MSLEEFSRYAEEDPEIDKE--------I-D 64 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHH--HHcC-----CCHHHHHHHHhcCchhhHH--------H-H
Confidence 468999999999999999999998743333223222100 0011 4444554432221111110 0 1
Q ss_pred HHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHH-HHHHH---h----
Q 023332 171 KQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIA-TAREE---I---- 242 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~-~~~~e---~---- 242 (284)
....+... ..+||+++...+|..- +..++.||+.+| .++..+|+.+|.+.+.++...... +...+ +
T Consensus 65 ~rq~e~a~-~~nvVlegrLA~Wi~k----~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~Y 138 (179)
T COG1102 65 RRQKELAK-EGNVVLEGRLAGWIVR----EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIY 138 (179)
T ss_pred HHHHHHHH-cCCeEEhhhhHHHHhc----cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12223334 6789999888766322 256788999998 799999999998766443332222 11111 1
Q ss_pred ----hccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 243 ----KHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 243 ----~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
.....||+||..+.-++++++.-|..+++....+
T Consensus 139 gIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~~ 176 (179)
T COG1102 139 GIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSIK 176 (179)
T ss_pred CCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhccc
Confidence 1124578887666568899988888888876543
No 37
>PRK14531 adenylate kinase; Provisional
Probab=99.45 E-value=3.2e-12 Score=106.17 Aligned_cols=164 Identities=19% Similarity=0.262 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
+.|+++|++||||||+++.|++.++..++...+..|+.... +..+ .......+..+....... ..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~---~~~~----~~~~~~~~~~G~~v~d~l--------~~ 67 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAA---GSAL----GQEAEAVMNRGELVSDAL--------VL 67 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhc---CCHH----HHHHHHHHHcCCCCCHHH--------HH
Confidence 35899999999999999999998864444444444432111 1000 001111112222111110 00
Q ss_pred HHHHHHHH--cCCcEEEEecHHHHHH------HHHHhCC-CeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHHHHH
Q 023332 171 KQIREYMA--KGYDIILRVDIQGAQT------LRRVLGD-SAVFVFLMAESETALVERLVERKT--ESREELLVRIATAR 239 (284)
Q Consensus 171 ~~i~~~l~--~g~~vvld~~~~~~~~------l~~~~g~-~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~~~~ 239 (284)
..+...+. .+..+|+|+.+....+ +...++. ...+|++++| .+++.+|+..|++ ++++.+.+|+..+.
T Consensus 68 ~~~~~~l~~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~ 146 (183)
T PRK14531 68 AIVESQLKALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELD-DAVLIERLLARGRADDNEAVIRNRLEVYR 146 (183)
T ss_pred HHHHHHHhhccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECC-HHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence 11122222 3567899988733322 2223332 3458999997 5999999988754 46677888887765
Q ss_pred HHhh----cc-CCccEEEECCCCCHHHHHHHHHHHH
Q 023332 240 EEIK----HV-KNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 240 ~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.... +. ...-++.+|++++++++..+|.+.+
T Consensus 147 ~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 147 EKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 5322 11 1122577888899999999998765
No 38
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.44 E-value=8.4e-13 Score=110.61 Aligned_cols=180 Identities=18% Similarity=0.185 Sum_probs=107.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CC--------CCCCceeE----ecCHHHHHHhhccc-ch
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PG--------EENGKDYY----FVSKEEFLTMIDKN-EL 155 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~----~~~~~~~~~~~~~~-~~ 155 (284)
..+|+|+|.+||||||+++.+++ ++...++.+...|... .| ...|.++. .+++..+...+.++ ..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~ 80 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEA 80 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHH
Confidence 46899999999999999999998 5444444455554210 00 01122111 13333333332221 11
Q ss_pred hhhhhhcccccCCCHH---HHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHH
Q 023332 156 LEYALVYGDYKGIPKK---QIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELL 232 (284)
Q Consensus 156 ~~~~~~~~~~yg~~~~---~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~ 232 (284)
..+.+- -.+....+ ...+..+.+ .+|+|...-.-..... ..+.+|.+.+| .++..+|+.+|+..+.+...
T Consensus 81 ~~~Le~--i~hPli~~~~~~~~~~~~~~-~~~~eiplL~e~~~~~---~~d~Vi~V~a~-~e~r~eRl~~R~~~~~e~~~ 153 (201)
T COG0237 81 RLKLEK--ILHPLIRAEIKVVIDGARSP-YVVLEIPLLFEAGGEK---YFDKVIVVYAP-PEIRLERLMKRDGLDEEDAE 153 (201)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHhhCC-ceEEEchHHHhccccc---cCCEEEEEECC-HHHHHHHHHhcCCCCHHHHH
Confidence 111110 00111111 112222233 5666654421111111 12578899997 69999999999988888888
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 233 VRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 233 ~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
.++..+....+....+|+|+.|+ ++++.+.+++..+++.......
T Consensus 154 ~~~~~Q~~~~ek~~~ad~vi~n~-~~i~~l~~~i~~~~~~~~~~~~ 198 (201)
T COG0237 154 ARLASQRDLEEKLALADVVIDND-GSIENLLEQIEKLLKELLGLVL 198 (201)
T ss_pred HHHHhcCCHHHHHhhcCChhhcC-CCHHHHHHHHHHHHHHHHhhhh
Confidence 88888877666677889887666 8999999999999998766544
No 39
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.44 E-value=5.8e-13 Score=109.80 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
..+|.+|+|+|++||||||+++.|++.+... +....+++.+.+........+...... ..+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~-----------------~~~~~~~~~d~~r~~~~~~~~~~~~~~--~~~ 64 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLK-----------------YSNVIYLDGDELREILGHYGYDKQSRI--EMA 64 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHc-----------------CCcEEEEecHHHHhhcCCCCCCHHHHH--HHH
Confidence 3568999999999999999999998776310 001111111111111110000000000 000
Q ss_pred CCCHHHH-HHHHHcCCcEEEEecHHH--HHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc--cCCHHHHHHHHHHHHHH
Q 023332 167 GIPKKQI-REYMAKGYDIILRVDIQG--AQTLRRVLGDSAVFVFLMAESETALVERLVERK--TESREELLVRIATAREE 241 (284)
Q Consensus 167 g~~~~~i-~~~l~~g~~vvld~~~~~--~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~--~~~~~~i~~rl~~~~~e 241 (284)
. ..... +.+...|..||+|+.... .............+||+++| .+++.+|+..+. ....+.+.+.+......
T Consensus 65 ~-~~~~l~~~l~~~g~~VI~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~ 142 (176)
T PRK05541 65 L-KRAKLAKFLADQGMIVIVTTISMFDEIYAYNRKHLPNYFEVYLKCD-MEELIRRDQKGLYTKALKGEIKNVVGVDIPF 142 (176)
T ss_pred H-HHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHhhcCCeEEEEEeCC-HHHHHHhchhhHHHHHHcCcccccccCCCcc
Confidence 0 01111 223467889999976522 33333333344578999997 689999985421 11112222233222211
Q ss_pred hhccCCccEEEECCC-CCHHHHHHHHHHHHHH
Q 023332 242 IKHVKNFDYVVVNAE-GKLDVAVKLVESIIDA 272 (284)
Q Consensus 242 ~~~~~~~D~vivn~~-~~~e~~~~~i~~~i~~ 272 (284)
. ...+|++|.|++ .++++.+++|.+.++.
T Consensus 143 ~--~~~Ad~vI~~~~~~~~~~~v~~i~~~l~~ 172 (176)
T PRK05541 143 D--EPKADLVIDNSCRTSLDEKVDLILNKLKL 172 (176)
T ss_pred c--CCCCCEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 134788988775 4889988888887743
No 40
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.42 E-value=1.3e-11 Score=101.92 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=88.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-----ccchhhhhhhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-----KNELLEYALVYG 163 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 163 (284)
.|++++|+|+|||||||+++.|++.+.. ..+ ++.++.. ......+.. ......+.....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~-~~i-------------~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~ 65 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA-KFI-------------DGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLN 65 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC-EEE-------------CCcccCC--HhHHHHHhcCCCCCcccchHHHHHHH
Confidence 3889999999999999999999987652 111 1111111 000111000 001011111110
Q ss_pred cccCCCHHHHHHHHHc-CCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC--HHHHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAK-GYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES--REELLVRIATA 238 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~-g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~--~~~i~~rl~~~ 238 (284)
+ .+...+.. ...+|+ +++ ...+.+....+.++.+|||++| .+++.+|+.+|..+. .+.+..+++..
T Consensus 66 ~-------~~~~~~~~~~~g~iv-~s~~~~~~R~~~r~~~~~~~~v~l~a~-~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~ 136 (176)
T PRK09825 66 D-------ASYSLYKKNETGFIV-CSSLKKQYRDILRKSSPNVHFLWLDGD-YETILARMQRRAGHFMPPDLLQSQFDAL 136 (176)
T ss_pred H-------HHHHHHhcCCCEEEE-EEecCHHHHHHHHhhCCCEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHHHc
Confidence 0 11111222 223344 433 4455555666678899999997 699999999997432 23333332211
Q ss_pred HHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 239 REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 239 ~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
+.......+++.+|.+++++++..++...+...
T Consensus 137 --e~~~~~e~~~~~~d~~~~~~~~~~~~~~~~~~~ 169 (176)
T PRK09825 137 --ERPCADEHDIARIDVNHDIENVTEQCRQAVQAF 169 (176)
T ss_pred --CCCCCCcCCeEEEECCCCHHHHHHHHHHHHHHH
Confidence 111223457899999999988888888888664
No 41
>PRK13973 thymidylate kinase; Provisional
Probab=99.41 E-value=1.7e-11 Score=104.24 Aligned_cols=175 Identities=18% Similarity=0.154 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcc------cchhhhhhhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK------NELLEYALVY 162 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 162 (284)
+|++|+|.|+.||||||+++.|++.+...+... ..++.|... ..| +.+...+.. +...+..-+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~-~~~~~p~~~-~~g--------~~ir~~l~~~~~~~~~~~~~~ll~~ 71 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDV-LVTREPGGS-PGA--------EAIRHVLLSGAAELYGPRMEALLFA 71 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeE-EEEECCCCC-chH--------HHHHHHHcCCCccCCCHHHHHHHHH
Confidence 389999999999999999999998874222221 122223211 111 111111100 0001111111
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH------H---------HHHHHHHHh---CCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI------Q---------GAQTLRRVL---GDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~------~---------~~~~l~~~~---g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
+..+......+...++.|..||+|-.+ + .+..+.... ..++.+|++++| .+++.+|+.+|.
T Consensus 72 a~r~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~-~e~~~~Rl~~R~ 150 (213)
T PRK13973 72 AARDDHVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIP-AEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHHHhcc
Confidence 111222234567788999999999433 1 222232211 257899999998 599999998885
Q ss_pred cCC--------HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 225 TES--------REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 225 ~~~--------~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
..+ ..+..++....+.++.......++++|+++++|++..+|..++....
T Consensus 151 ~~~~~~~~e~~~~~~~~~~~~~y~~l~~~~~~~~~~Ida~~~~e~V~~~I~~~i~~~~ 208 (213)
T PRK13973 151 GSDTPDRFEKEDLAFHEKRREAFLQIAAQEPERCVVIDATASPEAVAAEIWAAVDQRL 208 (213)
T ss_pred CCCccCchhhchHHHHHHHHHHHHHHHHhCCCcEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 321 11233344444433332122246778999999999999999998753
No 42
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.41 E-value=9e-12 Score=105.70 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=98.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHH
Q 023332 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQ 172 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~ 172 (284)
|+|+|++||||||+++.|++.++..++...+..|+..... ..+ .......+..+....... ..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~---~~~----~~~~~~~~~~g~~vp~~~--------~~~l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAG---TPL----GKKAKEYMEKGELVPDEI--------VNQL 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccc---cHH----HHHHHHHHhCCCCCCHHH--------HHHH
Confidence 7899999999999999999988655554444444321110 000 011111122222221111 0112
Q ss_pred HHHHHHc----CCcEEEEecHHHH---HHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhc--------------------
Q 023332 173 IREYMAK----GYDIILRVDIQGA---QTLRRVLG-DSAVFVFLMAESETALVERLVERK-------------------- 224 (284)
Q Consensus 173 i~~~l~~----g~~vvld~~~~~~---~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~-------------------- 224 (284)
+.+.+.. +..+|+|+.+... ..+.+..+ ....+|++++| .+++.+|+..|.
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~ 145 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVP-DEELVERLSGRRICPSCGRVYHLKFNPPKVPG 145 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECC-HHHHHHHHHCCCccCCcCCccccccCCCccCC
Confidence 2233332 5789999976433 33444443 46789999998 589999998763
Q ss_pred -------------cCCHHHHHHHHHHHHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHH
Q 023332 225 -------------TESREELLVRIATAREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 225 -------------~~~~~~i~~rl~~~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
+++++.+.+|+..+..... +. ...-++.+|++++++++.+.|.+.|
T Consensus 146 ~~~~~~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 146 CDDCTGELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred cCcccCCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 2457888899887665332 11 1223777899999999999998876
No 43
>PRK14530 adenylate kinase; Provisional
Probab=99.40 E-value=1.2e-11 Score=105.31 Aligned_cols=170 Identities=20% Similarity=0.220 Sum_probs=99.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+..|+|+|++||||||+++.|++.++..++...+..|..... +...... ........+..+.+.+.. ..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~--~~~~~~~-~~~~~~~~~~~g~~~~d~--------~~ 71 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQM--DISDMDT-EYDTPGEYMDAGELVPDA--------VV 71 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccC--Ccccccc-hHHHHHHHHHcCCCCCHH--------HH
Confidence 456899999999999999999998864444444433321100 0000000 000001011111111110 01
Q ss_pred HHHHHHHHHcCCcEEEEecHHHHHH---HHHHhCCCeEEEEEecCCHHHHHHHHHhhc----------------------
Q 023332 170 KKQIREYMAKGYDIILRVDIQGAQT---LRRVLGDSAVFVFLMAESETALVERLVERK---------------------- 224 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~~~---l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~---------------------- 224 (284)
...++..+.....+|+|+.+....+ +.... ....+|++++| .+++.+|+..|.
T Consensus 72 ~~~l~~~l~~~~~~IldG~pr~~~q~~~l~~~~-~~d~vI~Ld~~-~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~ 149 (215)
T PRK14530 72 NEIVEEALSDADGFVLDGYPRNLEQAEYLESIT-DLDVVLYLDVS-EEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVC 149 (215)
T ss_pred HHHHHHHHhcCCCEEEcCCCCCHHHHHHHHHhc-CCCEEEEEeCC-HHHHHHHHhCCCcCcccCCccccCCCCCcccccC
Confidence 1233344555668999986543322 22222 45788999998 589989886652
Q ss_pred -----------cCCHHHHHHHHHHHHHHhhc----c-CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 225 -----------TESREELLVRIATAREEIKH----V-KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 225 -----------~~~~~~i~~rl~~~~~e~~~----~-~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.++++.+.+|+..+..+... . ...-++.+|++++++++.+.|.+.|.+
T Consensus 150 ~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 150 DECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred cccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 34678899999876653221 1 122367889999999999999998875
No 44
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.40 E-value=5.7e-12 Score=106.07 Aligned_cols=175 Identities=18% Similarity=0.200 Sum_probs=107.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-----chhhhhhhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-----ELLEYALVYG 163 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 163 (284)
.|++|+|-|.-||||||+++.|.+.+...+. ....+|.|..... |. .......++ ...+..-+..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~-~v~~trEP~~~~i-ge--------~iR~~ll~~~~~~~~~~e~lLfaa 71 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI-KVVLTREPGGTPI-GE--------KIRELLLNGEEKLSPKAEALLFAA 71 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCCCChH-HH--------HHHHHHcCCccCCCHHHHHHHHHH
Confidence 4899999999999999999999988754433 3444566654211 11 011111110 0011111111
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHhC---CCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVLG---DSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~g---~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
..+......+...+..|+.||+|-.. ....++.+... .++.++|++.| .++..+|+.+|+.
T Consensus 72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~-~e~al~R~~~r~~ 150 (208)
T COG0125 72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVP-PEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCC-HHHHHHHHHhcCC
Confidence 11122234566778899999999322 23334444443 56889999998 5999999999865
Q ss_pred C-CH---H--HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 226 E-SR---E--ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 226 ~-~~---~--~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
. +. + .+.+++...+.++......-++++|++.+++++.++|.+.+....
T Consensus 151 ~~~r~E~~~~~f~~kvr~~Y~~la~~~~~r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 151 LRDRFEKEDDEFLEKVREGYLELAAKFPERIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 3 21 2 235555555555433322358889999999999999999988753
No 45
>PLN02924 thymidylate kinase
Probab=99.40 E-value=1.1e-11 Score=105.77 Aligned_cols=175 Identities=11% Similarity=0.101 Sum_probs=102.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc----chhhhhhhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN----ELLEYALVY 162 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 162 (284)
...|.+|+|.|..||||||+++.|++.+...+..+ ..++.|..+...|.. ........ ...+..-+.
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v-~~~~ep~~~~~~g~~--------ir~~l~~~~~~~~~~~~llf~ 83 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA-ELWRFPDRTTSVGQM--------ISAYLSNKSQLDDRAIHLLFS 83 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc-eeeeCCCCCChHHHH--------HHHHHhCCCCCCHHHHHHHHH
Confidence 46699999999999999999999998875333222 233333221111110 00000000 000111111
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH--------------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc-CC
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI--------------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT-ES 227 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~--------------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~-~~ 227 (284)
...+.. ...+...++.|..||+|-.. +.+..+......++++||+++| .++..+|...+.. ..
T Consensus 84 adR~~~-~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~-~~~a~~R~~~~~~~~E 161 (220)
T PLN02924 84 ANRWEK-RSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDIS-PEEAAERGGYGGERYE 161 (220)
T ss_pred HHHHHH-HHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCccccc
Confidence 111111 24578888999999999433 1122222223357899999997 5888888653321 11
Q ss_pred HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 228 REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 228 ~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
..++.+++...+..+.. ..++++|++.+++++.++|.+++.....
T Consensus 162 ~~~~~~rv~~~Y~~la~---~~~~vIDa~~sieeV~~~I~~~I~~~l~ 206 (220)
T PLN02924 162 KLEFQKKVAKRFQTLRD---SSWKIIDASQSIEEVEKKIREVVLDTVQ 206 (220)
T ss_pred cHHHHHHHHHHHHHHhh---cCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 23455666665555432 3467779989999999999999987654
No 46
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.39 E-value=2.3e-12 Score=105.51 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=86.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCc-eeEeeecccc--CCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSL-RFVVTATSRP--MRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~~~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
|++|+|-|+|.|||||+++.|.+.++.. .....+..+. +......+..+.+.... -+........|
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~-----------~~~~~~~~~~~ 69 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDR-----------PDGGPLFRRLY 69 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTS-----------EEE-HHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccC-----------CchhHHHHHHH
Confidence 5799999999999999999999887632 2222222211 00000011111110000 00000111122
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH---HH-HHHHHHHh-CCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI---QG-AQTLRRVL-GDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE 241 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~---~~-~~~l~~~~-g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e 241 (284)
......+....++|.+||+|.-+ .. ...+++.+ |.++.+|-|.|| .+++.+|-+.|++........+ ...
T Consensus 70 ~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G~a~~q----~~~ 144 (174)
T PF07931_consen 70 AAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIGLAAWQ----AEH 144 (174)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTTHHHHH----TTG
T ss_pred HHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchHHHHHH----Hhh
Confidence 22345677889999999999654 22 22333434 788899999998 6999999999986443311111 111
Q ss_pred hhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 242 IKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 242 ~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
+-....||+.|..+..+.+++.++|.+.++
T Consensus 145 Vh~~~~YDleVDTs~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 145 VHEGGRYDLEVDTSATSPEECAREILARLE 174 (174)
T ss_dssp GGTT---SEEEETTSS-HHHHHHHHHTT--
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHhC
Confidence 222346899987777799999999987653
No 47
>PRK14532 adenylate kinase; Provisional
Probab=99.39 E-value=1e-11 Score=103.36 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
-|+|+|++||||||+++.|++.++..++..++..|+... .+... .......+..+...+...+ ..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~---~~~~~----~~~~~~~~~~g~~~~~~~~--------~~ 66 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIA---SGSEL----GQRVKGIMDRGELVSDEIV--------IA 66 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHH---cCCHH----HHHHHHHHHCCCccCHHHH--------HH
Confidence 378999999999999999999887545544454443210 00000 0011111112221111100 11
Q ss_pred HHHH---HHHcCCcEEEEecHHHH------HHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhc------cCCHHHHHHHH
Q 023332 172 QIRE---YMAKGYDIILRVDIQGA------QTLRRVLG-DSAVFVFLMAESETALVERLVERK------TESREELLVRI 235 (284)
Q Consensus 172 ~i~~---~l~~g~~vvld~~~~~~------~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i~~rl 235 (284)
.+.+ ....+..+|+|+.+... ..+....| .++.+|++++| .+++.+|+..|. .++++.+.+|+
T Consensus 67 ~~~~~~~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~-~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl 145 (188)
T PRK14532 67 LIEERLPEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVD-DEALIERIVKRFEEQGRPDDNPEVFVTRL 145 (188)
T ss_pred HHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCcCcCCCCCCCHHHHHHHH
Confidence 1111 12346789999877322 22233333 34478999998 589999998774 23456777888
Q ss_pred HHHHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 236 ATAREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 236 ~~~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
...+.+.. +. ...-++.+|++++++++.++|.+.+.
T Consensus 146 ~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l~ 186 (188)
T PRK14532 146 DAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAALE 186 (188)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHh
Confidence 76655331 11 12236677888899999999998875
No 48
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.38 E-value=1.7e-11 Score=104.45 Aligned_cols=165 Identities=18% Similarity=0.233 Sum_probs=96.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
.|+|+|++||||||+++.|++.++..++...+..|+.... +.. ........+..+....... ...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~---~~~----~~~~~~~~~~~g~~~p~~~--------~~~ 66 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKA---GTE----LGKEAKSYMDAGELVPDEI--------VIG 66 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhc---cch----HHHHHHHHHHcCCcCCHHH--------HHH
Confidence 4899999999999999999998875444443433321110 000 0011111122222111110 111
Q ss_pred HHHHHHHc---CCcEEEEecHHHHHH---H---HHHhCC-CeEEEEEecCCHHHHHHHHHhhc-----------------
Q 023332 172 QIREYMAK---GYDIILRVDIQGAQT---L---RRVLGD-SAVFVFLMAESETALVERLVERK----------------- 224 (284)
Q Consensus 172 ~i~~~l~~---g~~vvld~~~~~~~~---l---~~~~g~-~~~~I~l~~p~~~~l~~Rl~~R~----------------- 224 (284)
.+.+.+.. +..+|+|+.+....+ + ....+. ...+|++++| .+++.+|+..|.
T Consensus 67 ~i~~~l~~~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~~~~~~~~p~ 145 (215)
T PRK00279 67 LVKERLAQPDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVP-DEELVERLSGRRICPACGRTYHVKFNPPK 145 (215)
T ss_pred HHHHHHhccCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHhCCcccCccCCcccccCCCCC
Confidence 22223322 347999986632222 2 122232 3478999998 589999998773
Q ss_pred ----------------cCCHHHHHHHHHHHHHHhhc----c-CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 225 ----------------TESREELLVRIATAREEIKH----V-KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 225 ----------------~~~~~~i~~rl~~~~~e~~~----~-~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+++++.+..|+..+...... . ...-++.+|+++++++++++|.+.|..
T Consensus 146 ~~~~~~~~~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 146 VEGKCDVCGEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALGK 214 (215)
T ss_pred CcCcCcCCCCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHhc
Confidence 34678889998876653221 1 122367789999999999999998864
No 49
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.38 E-value=2.8e-12 Score=106.15 Aligned_cols=160 Identities=23% Similarity=0.262 Sum_probs=92.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCC-C--------CCCCceeE----ecCHHHHHHhhccc-chhh
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP-G--------EENGKDYY----FVSKEEFLTMIDKN-ELLE 157 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~-~--------~~~~~~~~----~~~~~~~~~~~~~~-~~~~ 157 (284)
+|+|+|++||||||+++.|++ ++...+..+...+.... + ...|..+. .+++..+...+..+ ..+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~ 79 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRK 79 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHH
Confidence 489999999999999999988 55334434443332111 0 01222221 24444444433221 1111
Q ss_pred hhhhcccccCCCHHHHHHHHHc---CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHH
Q 023332 158 YALVYGDYKGIPKKQIREYMAK---GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVR 234 (284)
Q Consensus 158 ~~~~~~~~yg~~~~~i~~~l~~---g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~r 234 (284)
..+ .-++......+.+.+.. ...+|+|+.......+... .+.+|++++| .++..+|+.+|+..+.+++.++
T Consensus 80 ~l~--~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~~~---~D~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r 153 (179)
T cd02022 80 KLE--AITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLEKL---VDRVIVVDAP-PEIQIERLMKRDGLSEEEAEAR 153 (179)
T ss_pred HHH--HHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcHHh---CCeEEEEECC-HHHHHHHHHHcCCCCHHHHHHH
Confidence 110 00111112222222222 2467778765333233333 3688999997 6999999999988888999999
Q ss_pred HHHHHHHhhccCCccEEEECCCCCH
Q 023332 235 IATAREEIKHVKNFDYVVVNAEGKL 259 (284)
Q Consensus 235 l~~~~~e~~~~~~~D~vivn~~~~~ 259 (284)
+..+....++...+|+||.|+ +++
T Consensus 154 ~~~Q~~~~~~~~~aD~vI~N~-~~~ 177 (179)
T cd02022 154 IASQMPLEEKRARADFVIDNS-GSL 177 (179)
T ss_pred HHhcCCHHHHHHhCCEEEECc-CCC
Confidence 988766555667899999887 554
No 50
>PRK13808 adenylate kinase; Provisional
Probab=99.38 E-value=1.5e-11 Score=110.12 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=99.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
-|+|+||+||||||+++.|++.++..++...+..|.... .+... ...+...+..+.+.....+.. ...+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~---~~s~~----g~~~~~~~~~G~lVPdeiv~~----li~e 70 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA---AGTPV----GLKAKDIMASGGLVPDEVVVG----IISD 70 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh---cCChh----hHHHHHHHHcCCCCCHHHHHH----HHHH
Confidence 378999999999999999999887555555444443110 00000 011111122222222111100 0011
Q ss_pred HHHHHHHcCCcEEEEecHHHHHHHH------HHhC-CCeEEEEEecCCHHHHHHHHHhh------------ccCCHHHHH
Q 023332 172 QIREYMAKGYDIILRVDIQGAQTLR------RVLG-DSAVFVFLMAESETALVERLVER------------KTESREELL 232 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~~l~------~~~g-~~~~~I~l~~p~~~~l~~Rl~~R------------~~~~~~~i~ 232 (284)
.+.. ......+|||+.+....|.. ...| .++.+|++++| .+++.+|+..| .+++++.+.
T Consensus 71 ~l~~-~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp-~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~ 148 (333)
T PRK13808 71 RIEQ-PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVN-EGALLARVETRVAEMRARGEEVRADDTPEVLA 148 (333)
T ss_pred HHhc-ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECC-HHHHHHHHHcCcccccccCCccCCCCCHHHHH
Confidence 1111 12235789998774333322 1111 46788999997 59999999876 234577888
Q ss_pred HHHHHHHHH----hhccCC-ccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 233 VRIATAREE----IKHVKN-FDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 233 ~rl~~~~~e----~~~~~~-~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
.|+..+... +.+... --++.||+++++|+++++|...|.....
T Consensus 149 kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 149 KRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred HHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 888665543 222222 2367889989999999999999987644
No 51
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.37 E-value=1.1e-11 Score=105.04 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHHHHHHHH------hhccCCc
Q 023332 180 GYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVRIATAREE------IKHVKNF 248 (284)
Q Consensus 180 g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl~~~~~e------~~~~~~~ 248 (284)
...+|+|+.+... ..+...+ +..||+++| .+++.+|...|. +.+.+++..++..+... .+....+
T Consensus 106 ~~~vivEg~~l~~~~~~~~~~---d~~I~v~~~-~~~~~~R~~~Rd~~~rg~~~e~~~~~~~~~~~~~~~~~i~~~~~~A 181 (209)
T PRK05480 106 KDVIILEGILLLEDERLRDLM---DIKIFVDTP-LDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPSKRYA 181 (209)
T ss_pred CCEEEEEeehhcCchhHhhhh---ceeEEEeCC-hhHHHHHHHhhcchhcCCCHHHHHHHHHHhhhhhHHhhccHhhcce
Confidence 3468889877544 3444433 688999998 488888887776 45666666666554331 1234678
Q ss_pred cEEEECCC---CCHHHHHHHHHHHHHH
Q 023332 249 DYVVVNAE---GKLDVAVKLVESIIDA 272 (284)
Q Consensus 249 D~vivn~~---~~~e~~~~~i~~~i~~ 272 (284)
|+||.|+. ++++.+.++|..++++
T Consensus 182 D~vI~~~~~~~~~~~~l~~~i~~~~~~ 208 (209)
T PRK05480 182 DIIIPEGGKNRVAIDILKAKIRQLLEK 208 (209)
T ss_pred eEEecCCCcchHHHHHHHHHHHHHhhc
Confidence 99987551 3788888888777653
No 52
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.36 E-value=5.5e-12 Score=103.23 Aligned_cols=180 Identities=20% Similarity=0.247 Sum_probs=110.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCC--------CCCCceeE----ecCHHHHHHhhccc-chh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPG--------EENGKDYY----FVSKEEFLTMIDKN-ELL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~--------~~~~~~~~----~~~~~~~~~~~~~~-~~~ 156 (284)
.+++|+|..||||||+++.+.+ ++...+..+..-|.. .+| +..|.++- .++++.+..++.++ ...
T Consensus 2 ~iVGLTGgiatGKStVs~~f~~-~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r 80 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFKA-LGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKR 80 (225)
T ss_pred eEEEeecccccChHHHHHHHHH-cCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHH
Confidence 4799999999999999999974 444444444444431 111 11222221 14555555443221 111
Q ss_pred --hhhhhcccccCCCHHHHHHHHHcCC-cEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 157 --EYALVYGDYKGIPKKQIREYMAKGY-DIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 157 --~~~~~~~~~yg~~~~~i~~~l~~g~-~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
-+...+..++-...+++-..+-.|. .||+|...-....+.... ..+|.+.|+ .++..+|+.+|+..+++..++
T Consensus 81 ~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~~~---~~tvvV~cd-~~~Ql~Rl~~Rd~lse~dAe~ 156 (225)
T KOG3220|consen 81 QALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLKIC---HKTVVVTCD-EELQLERLVERDELSEEDAEN 156 (225)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHhhe---eeEEEEEEC-cHHHHHHHHHhccccHHHHHH
Confidence 1111222222122233434455565 677887664333344333 455666775 478889999999889999999
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
|++.+..-.++...+|+|+.|+ ++++++.+++..++.....+
T Consensus 157 Rl~sQmp~~~k~~~a~~Vi~Nn-g~~~~l~~qv~~v~~~~~~s 198 (225)
T KOG3220|consen 157 RLQSQMPLEKKCELADVVIDNN-GSLEDLYEQVEKVLALLQKS 198 (225)
T ss_pred HHHhcCCHHHHHHhhheeecCC-CChHHHHHHHHHHHHHhcch
Confidence 9998876555667788887766 89999999999988776544
No 53
>COG0645 Predicted kinase [General function prediction only]
Probab=99.36 E-value=7.2e-12 Score=100.40 Aligned_cols=119 Identities=22% Similarity=0.210 Sum_probs=84.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCC--CCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGE--ENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
++++.+.|.+|+||||+++.|++.++ ...+.++..|+...|. .....-...+.. .....|.
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~lg-A~~lrsD~irk~L~g~p~~~r~~~g~ys~~----------------~~~~vy~ 63 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELLG-AIRLRSDVIRKRLFGVPEETRGPAGLYSPA----------------ATAAVYD 63 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhcC-ceEEehHHHHHHhcCCcccccCCCCCCcHH----------------HHHHHHH
Confidence 36789999999999999999999885 6777788888766651 111110001111 1111233
Q ss_pred CCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 168 IPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
......+.++..|.+||+|+.+ ..+..++...|.++..|+|.+| .+++..|+..|..+
T Consensus 64 ~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap-~~v~~~rl~aR~~d 127 (170)
T COG0645 64 ELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAP-EEVLRGRLAARKGD 127 (170)
T ss_pred HHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCc-HHHHHHHHHHhCCC
Confidence 3344567889999999999988 3455566666788888999998 69999999999874
No 54
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.36 E-value=6.4e-13 Score=109.75 Aligned_cols=163 Identities=20% Similarity=0.277 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCC-CC--------CCCcee----EecCHHHHHHhhcccc-hh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP-GE--------ENGKDY----YFVSKEEFLTMIDKNE-LL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~-~~--------~~~~~~----~~~~~~~~~~~~~~~~-~~ 156 (284)
++|+|+|..||||||+++.|.+ ++...+..+...+.... +. ..|.++ ..+++..+...+..+. .+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~ 79 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKL 79 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHH
Confidence 4799999999999999999988 44333333333332111 10 011222 1245555555433221 11
Q ss_pred hhhhhcccccCCCHHHHHHHHHc---CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHH
Q 023332 157 EYALVYGDYKGIPKKQIREYMAK---GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLV 233 (284)
Q Consensus 157 ~~~~~~~~~yg~~~~~i~~~l~~---g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~ 233 (284)
...+ .-++....+.+++.+.. ...+|+|+..-.-..+.. ..+.+|++.+| .++..+|+.+|++.+.+.+..
T Consensus 80 ~~L~--~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~---~~D~vi~V~a~-~e~ri~Rl~~R~~~~~~~~~~ 153 (180)
T PF01121_consen 80 KKLE--NIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEK---LCDEVIVVYAP-EEIRIKRLMERDGLSEEEAEA 153 (180)
T ss_dssp HHHH--HHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGG---GSSEEEEEE---HHHHHHHHHHHHTSTHHHHHH
T ss_pred HHHH--HHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhh---hhceEEEEECC-HHHHHHHHHhhCCCcHHHHHH
Confidence 1110 00111111222222222 257888876632222222 23688899997 699999999999999999999
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHH
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDV 261 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~ 261 (284)
++..+....++...+|+||.|+ |++++
T Consensus 154 ri~~Q~~~~~k~~~ad~vI~N~-g~~~~ 180 (180)
T PF01121_consen 154 RIASQMPDEEKRKRADFVIDNN-GSLEE 180 (180)
T ss_dssp HHHTS--HHHHHHH-SEEEE-S-SHHH-
T ss_pred HHHhCCCHHHHHHhCCEEEECC-CCCCC
Confidence 9999888777778899999887 77764
No 55
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.36 E-value=1.2e-11 Score=103.71 Aligned_cols=181 Identities=13% Similarity=0.110 Sum_probs=98.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCc-eeEecCHHHHHHhhcccc----hhhhhhhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGK-DYYFVSKEEFLTMIDKNE----LLEYALVYG 163 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 163 (284)
.+++|+|+|+|||||||+++.|++.++.......+..|+...+..... ....-+.+.+. .+.... ...+..-..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~-~~~~~~~~~~~~~y~~q~~ 80 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWE-FYGSMTDENIVKGYLDQAR 80 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHH-HcCCcchhHHHHHHHHHHH
Confidence 368999999999999999999999876444555555554221111100 11100000000 010000 000111111
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC-----HHHHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES-----REELLVRIATA 238 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~-----~~~i~~rl~~~ 238 (284)
..|....+.++..+..|.++|+|+.+..-..+.........++++..++.+.+++|+..|..+. .+...+.+...
T Consensus 81 ~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p~~~~~~~~~~i 160 (197)
T PRK12339 81 AIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSPGKRLAEHLPEY 160 (197)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 1233345567788999999999987733222222222345566666666789999999997432 23333333332
Q ss_pred HH----HhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 239 RE----EIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 239 ~~----e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
+. -++.+...++-++++ .+++++++.+.+.+.
T Consensus 161 r~i~~~l~~~a~~~~i~~i~~-~~~~~~~~~~~~~~~ 196 (197)
T PRK12339 161 RTIMDYSIADARGYNIKVIDT-DNYREARNPLLDPIS 196 (197)
T ss_pred HHHHHHHHHHHHHcCCCeecC-ccHHHHHHHHHHHhc
Confidence 22 122334556555555 469999999887653
No 56
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.35 E-value=4e-11 Score=97.73 Aligned_cols=90 Identities=19% Similarity=0.270 Sum_probs=58.5
Q ss_pred cCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHHHHHHHHHHHHHhhccC--CccEEE
Q 023332 179 KGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREELLVRIATAREEIKHVK--NFDYVV 252 (284)
Q Consensus 179 ~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~e~~~~~--~~D~vi 252 (284)
.|..+|+ +++ ..++.+....+.++.+|||++| .+++.+|+.+|.++ +.+.+..++. .++... ..+.++
T Consensus 67 ~~~~viv-~s~~~~~~r~~~~~~~~~~~~v~l~a~-~~~l~~Rl~~R~~~~a~~~vl~~Q~~----~~ep~~~~e~~~~~ 140 (163)
T PRK11545 67 NKVSLIV-CSALKKHYRDLLREGNPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQFE----TLQEPGADETDVLV 140 (163)
T ss_pred CCceEEE-EecchHHHHHHHHccCCCEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHH----HcCCCCCCCCCEEE
Confidence 3444444 554 3444444445678899999997 69999999999753 2233333332 222221 236788
Q ss_pred ECCCCCHHHHHHHHHHHHHHHH
Q 023332 253 VNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 253 vn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+|++.++++++.++...+.+.+
T Consensus 141 id~~~~~~~~~~~~~~~~~~~~ 162 (163)
T PRK11545 141 VDIDQPLEGVVASTIEVIKKGK 162 (163)
T ss_pred EeCCCCHHHHHHHHHHHHHHhc
Confidence 8898899999999999986653
No 57
>PRK13976 thymidylate kinase; Provisional
Probab=99.34 E-value=2e-11 Score=103.30 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCc-eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcc----cchhhhhhhcccc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSL-RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK----NELLEYALVYGDY 165 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 165 (284)
++|+|.|..||||||+++.|++.+... +......++.|.. ...| +.+...... ....+...+....
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~-~~~g--------~~ir~~l~~~~~~~~~~~~llf~a~R 71 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGG-TSFN--------ELVRGLLLSLKNLDKISELLLFIAMR 71 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCC-CHHH--------HHHHHHHcCCcCCCHHHHHHHHHHHH
Confidence 479999999999999999999887532 2112223333321 1111 011111110 0001111111222
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh--CCCeEEEEEecCCHHHHHHHHHhhccCC-
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL--GDSAVFVFLMAESETALVERLVERKTES- 227 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~--g~~~~~I~l~~p~~~~l~~Rl~~R~~~~- 227 (284)
+....+.+...++.|..||+|-.+ ..+..+.... ..++++||+++| .++..+|+.++..+.
T Consensus 72 ~~~~~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~-~e~a~~Ri~~~~~e~~ 150 (209)
T PRK13976 72 REHFVKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDID-IELSLSRADKNGYEFM 150 (209)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHhcccchhcc
Confidence 222234567788999999999322 2233333222 257899999997 699999986554332
Q ss_pred HHHHHHHHHHHHHHhhccCCccEEEECC---CCC---HHHHHHHHHHHHHHHHhhh
Q 023332 228 REELLVRIATAREEIKHVKNFDYVVVNA---EGK---LDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 228 ~~~i~~rl~~~~~e~~~~~~~D~vivn~---~~~---~e~~~~~i~~~i~~~~~~~ 277 (284)
..++.+++...+.++......-++++++ +++ ++++.++|.+++.+....+
T Consensus 151 ~~~~l~~v~~~Y~~l~~~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~~~~ 206 (209)
T PRK13976 151 DLEFYDKVRKGFREIVIKNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVTKDK 206 (209)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 3456677777766654332222555555 235 9999999999998876443
No 58
>PRK08233 hypothetical protein; Provisional
Probab=99.34 E-value=4.5e-11 Score=98.67 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+.+|+|.|++||||||+++.|++.++....+..+..+.+. ....+......+...+.. .....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~------------~~~~~~~~~~~~~~~~~~-----~~~~~ 65 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDN------------CPEDICKWIDKGANYSEW-----VLTPL 65 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEccc------------CchhhhhhhhccCChhhh-----hhHHH
Confidence 6899999999999999999999887532222222111100 000111111100000000 00001
Q ss_pred HHHHHHHHHcC--CcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHH----
Q 023332 170 KKQIREYMAKG--YDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERKT--ESREELLVRIATARE---- 240 (284)
Q Consensus 170 ~~~i~~~l~~g--~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~~~~~---- 240 (284)
.+.++...+.. ..+|+|+.+... ..+... .+.+||+++| .+++.+|+.+|.. .+.+.+.+++.....
T Consensus 66 ~~~l~~~~~~~~~~~vivd~~~~~~~~~~~~~---~d~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 141 (182)
T PRK08233 66 IKDIQELIAKSNVDYIIVDYPFAYLNSEMRQF---IDVTIFIDTP-LDIAMARRILRDFKEDTGNEIHNDLKHYLNYARP 141 (182)
T ss_pred HHHHHHHHcCCCceEEEEeeehhhccHHHHHH---cCEEEEEcCC-HHHHHHHHHHHHhhhccccchhhHHHHHHHHHHH
Confidence 12333333333 346667655322 234333 3688999997 5888888776642 122223233322221
Q ss_pred Hh----hc-cCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 241 EI----KH-VKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 241 e~----~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.+ .. ....+++ ++++.+++++.++|.+.+...
T Consensus 142 ~y~~~~~~~~~~~~~v-Id~~~~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 142 LYLEALHTVKPNADIV-LDGALSVEEIINQIEEELYRR 178 (182)
T ss_pred HHHHHhhcCccCCeEE-EcCCCCHHHHHHHHHHHHHhC
Confidence 11 11 1235555 567689999999999998754
No 59
>PRK14526 adenylate kinase; Provisional
Probab=99.34 E-value=4.5e-11 Score=101.31 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=96.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHH
Q 023332 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQ 172 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~ 172 (284)
++|+|++||||||+++.|++.++..++...+..|..... +... ...+...+..+.+.....+ ...
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~---~t~~----g~~i~~~~~~g~lvpd~~~--------~~l 67 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILN---STPL----GKEIKQIVENGQLVPDSIT--------IKI 67 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhccc---CChh----hHHHHHHHHcCccCChHHH--------HHH
Confidence 789999999999999999988764444444443321110 0000 0112222222222221110 112
Q ss_pred HHHHHH---cCCcEEEEecHHHHHH---HHHHhCCCeEEEEEecCCHHHHHHHHHhh-----------------------
Q 023332 173 IREYMA---KGYDIILRVDIQGAQT---LRRVLGDSAVFVFLMAESETALVERLVER----------------------- 223 (284)
Q Consensus 173 i~~~l~---~g~~vvld~~~~~~~~---l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R----------------------- 223 (284)
+.+.+. ....+|+|+.+....+ +.... ....+|++.+| .+++.+|+..|
T Consensus 68 v~~~l~~~~~~~g~ilDGfPR~~~Qa~~l~~~~-~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~ 145 (211)
T PRK14526 68 VEDKINTIKNNDNFILDGFPRNINQAKALDKFL-PNIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGIC 145 (211)
T ss_pred HHHHHhcccccCcEEEECCCCCHHHHHHHHHhc-CCCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcC
Confidence 222232 2467899987743333 33333 33466778887 58999998754
Q ss_pred ----------ccCCHHHHHHHHHHHHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 224 ----------KTESREELLVRIATAREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 224 ----------~~~~~~~i~~rl~~~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+++++.+.+|+..+..+.. +. ...-++.+|++++++++.++|.+.|++
T Consensus 146 ~~~~~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 146 DVCKGDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred CCCCCeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 34567889999988765432 11 122367789999999999999998875
No 60
>PRK13946 shikimate kinase; Provisional
Probab=99.33 E-value=4.1e-11 Score=99.61 Aligned_cols=160 Identities=19% Similarity=0.250 Sum_probs=89.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.++.|+|+|++||||||+++.|++.++ +.++..+...+... | .+..++........|. ..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg-~~~id~D~~~~~~~----g-----~~~~e~~~~~ge~~~~----------~~ 68 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLG-LPFLDADTEIERAA----R-----MTIAEIFAAYGEPEFR----------DL 68 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC-CCeECcCHHHHHHh----C-----CCHHHHHHHHCHHHHH----------HH
Confidence 357899999999999999999999875 22222221111000 1 1111111111000000 11
Q ss_pred CHHHHHHHHHcCCcEEEEe--cH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC------CHHHHHHHHHH
Q 023332 169 PKKQIREYMAKGYDIILRV--DI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE------SREELLVRIAT 237 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~--~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~------~~~~i~~rl~~ 237 (284)
..+.+..++..+..||..+ .+ .....+. ....+|||++| .+++.+|+..|... ......+++..
T Consensus 69 e~~~l~~l~~~~~~Vi~~ggg~~~~~~~r~~l~----~~~~~v~L~a~-~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~ 143 (184)
T PRK13946 69 ERRVIARLLKGGPLVLATGGGAFMNEETRAAIA----EKGISVWLKAD-LDVLWERVSRRDTRPLLRTADPKETLARLME 143 (184)
T ss_pred HHHHHHHHHhcCCeEEECCCCCcCCHHHHHHHH----cCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHH
Confidence 1234445555554444432 22 1122222 24578999997 69999999887642 12222233333
Q ss_pred HHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 238 AREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 238 ~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
.+..+ ...+|+++.+++.+++++++.|.+.+++...
T Consensus 144 ~R~~~--y~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~ 179 (184)
T PRK13946 144 ERYPV--YAEADLTVASRDVPKEVMADEVIEALAAYLE 179 (184)
T ss_pred HHHHH--HHhCCEEEECCCCCHHHHHHHHHHHHHHhhc
Confidence 33322 2247998888888999999999999987543
No 61
>PRK13974 thymidylate kinase; Provisional
Probab=99.33 E-value=9.3e-11 Score=99.65 Aligned_cols=175 Identities=21% Similarity=0.230 Sum_probs=97.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeE----eeeccccCCCCCCCCceeEecCHHHHHHhhccc-------chhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFV----VTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-------ELLE 157 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~----~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 157 (284)
.|++|+|.|+.||||||+++.|++.++..+.+ ....++.|. +...| +.+...+... ....
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~-~~~~g--------~~ir~~l~~~~~~~~~~~~~~ 72 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPG-GTLLG--------KSLRELLLDTSKDNSPSPLAE 72 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCC-CCchH--------HHHHHHHcCCCcccCCCHHHH
Confidence 38999999999999999999999887533221 111122222 11111 1111111100 0001
Q ss_pred hhhhcccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh--C-CCeEEEEEecCCHHHHHHH
Q 023332 158 YALVYGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL--G-DSAVFVFLMAESETALVER 219 (284)
Q Consensus 158 ~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~--g-~~~~~I~l~~p~~~~l~~R 219 (284)
..-+..+.+......++..+..|..||.|-.. +.+..+.... + .++.+|++++| .+++.+|
T Consensus 73 ~llf~adr~~~~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~-~~~~~~R 151 (212)
T PRK13974 73 LLLYAADRAQHVSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEIS-VEESIRR 151 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHH
Confidence 11111111122223456678889888887321 1233333211 1 46788999998 5999999
Q ss_pred HHhhccCCHH----HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 220 LVERKTESRE----ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 220 l~~R~~~~~~----~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+..|..+..+ .+.++....+..+. ....++.+|++++++++.++|.+++.+...
T Consensus 152 ~~~R~dD~~e~~~~~y~~~v~~~y~~y~--~~~~~~~Ida~~~~eeV~~~I~~~l~~~~~ 209 (212)
T PRK13974 152 RKNRKPDRIEAEGIEFLERVAEGFALIA--EERNWKVISADQSIETISNEIKETLLNNFS 209 (212)
T ss_pred HHhcccCchhhhhHHHHHHHHHHHHHHH--hcCCEEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 9888654322 23333333333222 223577789989999999999999987533
No 62
>PRK04182 cytidylate kinase; Provisional
Probab=99.33 E-value=6.6e-11 Score=97.41 Aligned_cols=162 Identities=23% Similarity=0.309 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+|++||||||+++.|++.++...+..++..+... ...| .+...+........... ....
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~--~~~g-----~~~~~~~~~~~~~~~~~---------~~~~ 64 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELA--KERG-----MSLEEFNKYAEEDPEID---------KEID 64 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHH--HHcC-----CCHHHHHHHhhcCchHH---------HHHH
Confidence 479999999999999999999877521211111111100 0000 11111111000000000 0011
Q ss_pred HHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH----Hh----
Q 023332 171 KQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE----EI---- 242 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~----e~---- 242 (284)
..+......+..+|+++....+ +.. +....+||+++| .+++.+|+..|...+.......+..... .+
T Consensus 65 ~~~~~~~~~~~~~Vi~g~~~~~--~~~--~~~~~~V~l~a~-~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~ 139 (180)
T PRK04182 65 RRQLEIAEKEDNVVLEGRLAGW--MAK--DYADLKIWLKAP-LEVRAERIAEREGISVEEALEETIEREESEAKRYKEYY 139 (180)
T ss_pred HHHHHHHhcCCCEEEEEeecce--Eec--CCCCEEEEEECC-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222333256678888754322 111 124678999997 6999999998876554433332222111 11
Q ss_pred ----hccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 243 ----KHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 243 ----~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.....+|++|.++..+++++++.|.+++...
T Consensus 140 ~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 140 GIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred CCCccccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 1124688888777779999999999999764
No 63
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.33 E-value=2.1e-13 Score=122.61 Aligned_cols=154 Identities=21% Similarity=0.227 Sum_probs=89.9
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCc
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGK 136 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~ 136 (284)
++..+..+.|+...++.++++. +.+|++++|+|||||||||++|+|+++.. |..|.+ +|.
T Consensus 6 l~i~~v~k~yg~~~av~~isl~------i~~Gef~~lLGPSGcGKTTlLR~IAGfe~------------p~~G~I~l~G~ 67 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLD------IKKGEFVTLLGPSGCGKTTLLRMIAGFEQ------------PSSGEILLDGE 67 (352)
T ss_pred EEEEeeeeecCCeeEEecceee------ecCCcEEEEECCCCCCHHHHHHHHhCCCC------------CCCceEEECCE
Confidence 4555556666655555555555 67799999999999999999999999864 333332 444
Q ss_pred eeEecCHH--HHHHhhcccchhhhhhhcccc-cCCC------HHHHHHHHHcCC-cEEEEecH------------HHHHH
Q 023332 137 DYYFVSKE--EFLTMIDKNELLEYALVYGDY-KGIP------KKQIREYMAKGY-DIILRVDI------------QGAQT 194 (284)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-yg~~------~~~i~~~l~~g~-~vvld~~~------------~~~~~ 194 (284)
++..+... .+....++..++++.++.+|+ ||.. .+.+++.+.+-. .|=++. + +-.-.
T Consensus 68 ~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~-~~~R~p~qLSGGQqQRVA 146 (352)
T COG3842 68 DITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEG-FADRKPHQLSGGQQQRVA 146 (352)
T ss_pred ECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchh-hhhhChhhhChHHHHHHH
Confidence 44443332 233345566667777888773 5543 233333222211 111211 1 11122
Q ss_pred HHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHH
Q 023332 195 LRRVLGDSAVFVFLMAESETALVERLVERKTESREELL 232 (284)
Q Consensus 195 l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~ 232 (284)
+++.+-..+.+++++-| ...+...|+...+.....++
T Consensus 147 LARAL~~~P~vLLLDEP-lSaLD~kLR~~mr~Elk~lq 183 (352)
T COG3842 147 LARALVPEPKVLLLDEP-LSALDAKLREQMRKELKELQ 183 (352)
T ss_pred HHHHhhcCcchhhhcCc-ccchhHHHHHHHHHHHHHHH
Confidence 33333366777888887 68888888776654333333
No 64
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.33 E-value=3.1e-11 Score=97.66 Aligned_cols=171 Identities=20% Similarity=0.278 Sum_probs=110.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
...+.+|.|+|++||||-|++..+++.++..++...+..|.....+ +..+. ..+...+.++...+...
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~--gse~g----~~I~~~i~~G~iVP~ei------ 72 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA--GSERG----ALIKEIIKNGDLVPVEI------ 72 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc--cChHH----HHHHHHHHcCCcCcHHH------
Confidence 4567899999999999999999999999855555555555432221 22111 12333344444443321
Q ss_pred CCCHHHHHHHHHcC---CcEEEEecHHHHHH---HHHHhC-CCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHH
Q 023332 167 GIPKKQIREYMAKG---YDIILRVDIQGAQT---LRRVLG-DSAVFVFLMAESETALVERLVERKT------ESREELLV 233 (284)
Q Consensus 167 g~~~~~i~~~l~~g---~~vvld~~~~~~~~---l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~ 233 (284)
..+.+++.+.+. ...++|+.+....+ +....+ ...+++|++|+ .+++.+|+..|++ ++.+.+.+
T Consensus 73 --~~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~-ee~~l~Rll~R~q~~~R~DDn~esikk 149 (195)
T KOG3079|consen 73 --TLSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCP-EETMLKRLLHRGQSNSRSDDNEESIKK 149 (195)
T ss_pred --HHHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHhhcccCCCCCCchHHHHH
Confidence 112233333322 23899997743333 334443 56788999998 6999999987753 46788999
Q ss_pred HHHHHHHH----hhccC-CccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 234 RIATAREE----IKHVK-NFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 234 rl~~~~~e----~~~~~-~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
|+...... +++.+ .-.+.-+|.+.++++++.++...+..
T Consensus 150 R~et~~~~t~Pvi~~~e~kg~l~~i~a~~~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 150 RLETYNKSTLPVIEYYEKKGKLLKINAERSVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHHcchHHHHHHHccCcEEEecCCCCHHHHHHHHHHHhhc
Confidence 99876652 22222 22455789999999999999998864
No 65
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.33 E-value=1e-11 Score=98.42 Aligned_cols=115 Identities=26% Similarity=0.338 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
+|+++|++||||||+++.|++.++ ...+..+..+....+. +...... ........+....+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-~~~i~~D~~~~~~~~~-~~~~~~~-----------------~~~~~~~~~~~~~~ 61 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-AVVISQDEIRRRLAGE-DPPSPSD-----------------YIEAEERAYQILNA 61 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-EEEEEHHHHHHHHCCS-SSGCCCC-----------------CHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-CEEEeHHHHHHHHccc-ccccchh-----------------HHHHHHHHHHHHHH
Confidence 589999999999999999998765 2222222222111110 0000000 00000111122234
Q ss_pred HHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 172 QIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
.+...++.|..+|+|.+. ..+..+...+|....+|++++| .+++.+|+..|...
T Consensus 62 ~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 62 AIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP-EETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH-HHHHHHHHHTTHCC
T ss_pred HHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC-HHHHHHHHHhcCCc
Confidence 566788999999999655 3455566667778899999997 69999999999765
No 66
>PRK07933 thymidylate kinase; Validated
Probab=99.32 E-value=1.4e-10 Score=98.64 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=97.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCC-CCCCceeEecCHHHHHHhhcc-------cchhhhhhhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG-EENGKDYYFVSKEEFLTMIDK-------NELLEYALVY 162 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 162 (284)
++|+|.|+.||||||+++.|++.+...+..+.. ++.|..+ ...|.. +...... ....+..-+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~-~~~P~~~~~~~g~~--------ir~~l~~~~~~~~~~~~~~~llf~ 71 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVAT-LAFPRYGRSVHADL--------AAEALHGRHGDLADSVYAMATLFA 71 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE-EecCCCCCCCccHH--------HHHHHcCCCCcccCCHHHHHHHHh
Confidence 579999999999999999999887533322222 2223211 111111 1111100 0001111111
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH------HH--------------HHHHHH-Hh--CCCeEEEEEecCCHHHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI------QG--------------AQTLRR-VL--GDSAVFVFLMAESETALVER 219 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~------~~--------------~~~l~~-~~--g~~~~~I~l~~p~~~~l~~R 219 (284)
.+.+.. ...|...++.|..||+|-.. +. ...+.. .+ ..++++||++.| .++..+|
T Consensus 72 a~R~~~-~~~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~-~e~a~~R 149 (213)
T PRK07933 72 LDRAGA-RDELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVP-VELAAER 149 (213)
T ss_pred hhhhhh-HHHHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCC-HHHHHHH
Confidence 222222 23577788899999999322 11 111211 11 247899999997 6999999
Q ss_pred HHhhccC----------CHHHHHHHHHHHHHHhhccC-CccEEEECCCCCHHHHHHHHHHHH
Q 023332 220 LVERKTE----------SREELLVRIATAREEIKHVK-NFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 220 l~~R~~~----------~~~~i~~rl~~~~~e~~~~~-~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
+.+|+.. ...++.+++...+.++.... ...++++|++.+++++.++|.+.+
T Consensus 150 i~~R~~~~~~~~~d~~E~~~~f~~~v~~~Y~~~~~~~~~~~~~~ida~~~~e~v~~~i~~~~ 211 (213)
T PRK07933 150 ARRRAAQDADRARDAYERDDGLQQRTGAVYAELAAQGWGGPWLVVDPDVDPAALAARLAAAL 211 (213)
T ss_pred HHhhccccCCcccccccccHHHHHHHHHHHHHHHHhcCCCCeEEeCCCCCHHHHHHHHHHHh
Confidence 9988631 11345566666655544322 335788899999999999998875
No 67
>PLN02674 adenylate kinase
Probab=99.32 E-value=3.9e-11 Score=103.39 Aligned_cols=164 Identities=18% Similarity=0.161 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.+.|+|+||+||||+|+++.|++.++..++...+..|... .+...| ..+...+..+.+.+...+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g--------~~i~~~~~~G~lvpd~iv------- 95 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLG--------IKAKEAMDKGELVSDDLV------- 95 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhh--------HHHHHHHHcCCccCHHHH-------
Confidence 4568999999999999999999988755555555444311 111111 112222333333332211
Q ss_pred CHHHHHHHHH---cCCcEEEEecHHHHHHHH------HHhC-CCeEEEEEecCCHHHHHHHHHhh---------------
Q 023332 169 PKKQIREYMA---KGYDIILRVDIQGAQTLR------RVLG-DSAVFVFLMAESETALVERLVER--------------- 223 (284)
Q Consensus 169 ~~~~i~~~l~---~g~~vvld~~~~~~~~l~------~~~g-~~~~~I~l~~p~~~~l~~Rl~~R--------------- 223 (284)
...+.+.+. .+..+|+|+.+....+.. ...| ....+|++++| .+++.+|+..|
T Consensus 96 -~~lv~~~l~~~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~ 173 (244)
T PLN02674 96 -VGIIDEAMKKPSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFA 173 (244)
T ss_pred -HHHHHHHHhCcCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccC
Confidence 112223332 246799999774333322 2222 35678999997 58999998765
Q ss_pred ------------------ccCCHHHHHHHHHHHHHHhhc----c-CCccEEEECCCCCHHHHHHHHHHHH
Q 023332 224 ------------------KTESREELLVRIATAREEIKH----V-KNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 224 ------------------~~~~~~~i~~rl~~~~~e~~~----~-~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.+++++.+.+|++.+..+... . ...-++.+|++++++++.++|..++
T Consensus 174 pp~~~~~~~~~g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 174 PPKVPGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred CCcccCcccccCCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 345678899999877654321 1 1123677899899999999998875
No 68
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.32 E-value=3.7e-11 Score=104.64 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=88.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
+|+|+|++||||||+++.|++.+... +.++..++.+.+...... +... +..........
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~-----------------~~~v~~i~~D~lr~~~~~--~~~~--~e~~~~~~~~~ 59 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK-----------------NIDVIILGTDLIRESFPV--WKEK--YEEFIRDSTLY 59 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc-----------------CCceEEEccHHHHHHhHH--hhHH--hHHHHHHHHHH
Confidence 48999999999999999998876310 011111111111111000 0000 00000011223
Q ss_pred HHHHHHHcCCcEEEEecHH------HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh--
Q 023332 172 QIREYMAKGYDIILRVDIQ------GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK-- 243 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~------~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~-- 243 (284)
.++..++.|..||+|+... .+..+....|....+||+++| .+++.+|...|+....+++..++...+++..
T Consensus 60 ~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p-~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~ 138 (249)
T TIGR03574 60 LIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAP-LDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTK 138 (249)
T ss_pred HHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCC-HHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCC
Confidence 5667788899999997651 222333445677788999997 6999999998875433333333332221111
Q ss_pred -ccCCccEEEECCCC--CHHHHHHHHHHHHHH
Q 023332 244 -HVKNFDYVVVNAEG--KLDVAVKLVESIIDA 272 (284)
Q Consensus 244 -~~~~~D~vivn~~~--~~e~~~~~i~~~i~~ 272 (284)
.+...+++| |++. +.++++++|.+.+..
T Consensus 139 ~~wd~~~~~v-d~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 139 YSWDLPDLTI-DTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCccCceEEe-cCCCCCCHHHHHHHHHHHhhc
Confidence 123455555 5444 678999999887654
No 69
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.31 E-value=5.8e-11 Score=106.07 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=85.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+.+|+++|++||||||+++.|++.++.+..+..+..|....+......+.+..... .. .+...
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~ 64 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKE--DL---------------VTKAQ 64 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHH--HH---------------HHHHH
Confidence 47899999999999999999998874333333333322111110000011100000 00 00111
Q ss_pred HHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHHHHHHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREELLVRIATAREE 241 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~e 241 (284)
...+...+..|..+|+|+.+ ..+..+.+.++....+|++.+| .+++.+|+.+|+.. ..+.+..+++.....
T Consensus 65 ~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~~~~~~i~~~~~~~~~~ 143 (300)
T PHA02530 65 EAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEELVKRNRKRGERAVPEDVLRSMFKQMKEY 143 (300)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHccCcCCCCHHHHHHHHHHHHHh
Confidence 23445667889999999765 2334445555566778999996 79999999999532 455555333322211
Q ss_pred hh--------ccCCccEEEECCCCCHHH
Q 023332 242 IK--------HVKNFDYVVVNAEGKLDV 261 (284)
Q Consensus 242 ~~--------~~~~~D~vivn~~~~~e~ 261 (284)
.+ .....+.+++|-++++.+
T Consensus 144 ~~~~~p~~~~~~~~~~~~~~D~dgtl~~ 171 (300)
T PHA02530 144 RGLVWPVYTADPGLPKAVIFDIDGTLAK 171 (300)
T ss_pred cCCCCceeccCCCCCCEEEEECCCcCcC
Confidence 11 112245666776666554
No 70
>PLN02459 probable adenylate kinase
Probab=99.31 E-value=6.9e-11 Score=102.41 Aligned_cols=173 Identities=14% Similarity=0.182 Sum_probs=105.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.++.|+|+||+||||||+++.|++.++..++...+..|.... .+..+ .......+.++.+.....+.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~---~~t~l----g~~i~~~~~~G~lVPdeiv~------ 94 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIK---SSGPL----GAQLKEIVNQGKLVPDEIIF------ 94 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHh---ccchh----HHHHHHHHHcCCccCHHHHH------
Confidence 346688899999999999999999886555554544443110 00000 11222233344443332211
Q ss_pred CHHHHHHHHH-----cCCcEEEEecHHHHHHHHHH--hCCCeEEEEEecCCHHHHHHHHHhh------------------
Q 023332 169 PKKQIREYMA-----KGYDIILRVDIQGAQTLRRV--LGDSAVFVFLMAESETALVERLVER------------------ 223 (284)
Q Consensus 169 ~~~~i~~~l~-----~g~~vvld~~~~~~~~l~~~--~g~~~~~I~l~~p~~~~l~~Rl~~R------------------ 223 (284)
..+.+.+. ....+|+|+.+....+.... ......+|++++| .+++.+|+..|
T Consensus 95 --~ll~~~l~~~~~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~-d~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~ 171 (261)
T PLN02459 95 --SLLSKRLEAGEEEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLR-EEVLVEKCLGRRICSECGKNFNVADIDLK 171 (261)
T ss_pred --HHHHHHHhcccccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECC-HHHHHHHhhccccccccCccccccccccc
Confidence 12222222 23679999988544443322 1245678999998 48998998655
Q ss_pred --------------------------ccCCHHHHHHHHHHHHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 224 --------------------------KTESREELLVRIATAREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 224 --------------------------~~~~~~~i~~rl~~~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+++++.+.+|++.+..+.. +. ...-++.+|++++++++.++|..+|..
T Consensus 172 ~~~~~~~~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~ 251 (261)
T PLN02459 172 GEDGRPGIVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNL 251 (261)
T ss_pred cccccccccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhch
Confidence 34567889999987765422 11 222367788989999999999999976
Q ss_pred HHhhh
Q 023332 273 EKAKV 277 (284)
Q Consensus 273 ~~~~~ 277 (284)
---.+
T Consensus 252 ~~~~~ 256 (261)
T PLN02459 252 DDEDK 256 (261)
T ss_pred hhhhh
Confidence 54433
No 71
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.30 E-value=9.4e-11 Score=95.93 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.++..|+|+|++||||||+++.|++.++...+..+... ... .|. +...+........+. .
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~-~~~----~g~-----~~~~~~~~~g~~~~~----------~ 61 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLI-EAR----AGK-----SIPEIFEEEGEAAFR----------E 61 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHH-HHH----cCC-----CHHHHHHHHCHHHHH----------H
Confidence 45788999999999999999999998752222211111 000 010 011110000000000 0
Q ss_pred CCHHHHHHHHHcCCcEEEEec-H---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC------C-HHHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVD-I---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE------S-REELLVRIA 236 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~-~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~------~-~~~i~~rl~ 236 (284)
.....+.++......||..+. . .....+.. ....+||+++| .+.+.+|+.+|... . .+.+.....
T Consensus 62 ~~~~~~~~l~~~~~~vi~~g~~~~~~~~~r~~l~---~~~~~v~l~~~-~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~ 137 (175)
T PRK00131 62 LEEEVLAELLARHNLVISTGGGAVLREENRALLR---ERGTVVYLDAS-FEELLRRLRRDRNRPLLQTNDPKEKLRDLYE 137 (175)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCEeecHHHHHHHH---hCCEEEEEECC-HHHHHHHhcCCCCCCcCCCCChHHHHHHHHH
Confidence 011223333433233333221 1 11122211 23578999997 68999999876531 1 122222222
Q ss_pred HHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 237 TAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 237 ~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
. +. ..+...+|++|..++.+++++++.|.++++..
T Consensus 138 ~-~~-~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 138 E-RD-PLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred H-HH-HHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 1 11 11234589888877789999999999999753
No 72
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.30 E-value=7.2e-11 Score=96.45 Aligned_cols=158 Identities=21% Similarity=0.280 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+|++||||||+++.|++.++...+..++..+... ...| .+...+...... .........
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~--~~~g-----~~~~~~~~~~~~---------~~~~~~~~~ 64 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA--AKMG-----LDLIEFLNYAEE---------NPEIDKKID 64 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH--HHcC-----CCHHHHHHHHhc---------CcHHHHHHH
Confidence 479999999999999999999876522221111111000 0000 011111100000 000000011
Q ss_pred HHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH-------Hhh
Q 023332 171 KQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-------EIK 243 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-------e~~ 243 (284)
+.+......+..+|+++....+. + . +.....||+++| .+++.+|+.+|...+.+...+++..... .+-
T Consensus 65 ~~i~~~~~~~~~~Vi~g~~~~~~-~-~--~~~d~~v~v~a~-~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~ 139 (171)
T TIGR02173 65 RRIHEIALKEKNVVLESRLAGWI-V-R--EYADVKIWLKAP-LEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFY 139 (171)
T ss_pred HHHHHHHhcCCCEEEEeccccee-e-c--CCcCEEEEEECC-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22333443566888898654331 1 1 123478999997 6999999999987776666555543221 110
Q ss_pred -----ccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 244 -----HVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 244 -----~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
....||++|.++.-++++ ++.|.+++
T Consensus 140 ~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 140 GIDIDDLSIYDLVINTSNWDPNN-VDIILDAL 170 (171)
T ss_pred CCCccccccccEEEECCCCCHHH-HHHHHHHh
Confidence 124688887666679999 99998875
No 73
>PRK02496 adk adenylate kinase; Provisional
Probab=99.29 E-value=1.2e-10 Score=96.75 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=92.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCC-CCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG-EENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+.++|+|++||||||+++.|++.++..+....+..+..... ...| ......+..+...+... .
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g--------~~~~~~~~~g~~~~~~~--------~ 65 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLG--------IKAQGYMDKGELVPDQL--------V 65 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhH--------HHHHHHHHCCCccCHHH--------H
Confidence 34899999999999999999988764344333333321100 0000 00111111111111100 0
Q ss_pred HHHHHHHHH---cCCcEEEEecHHH------HHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHHH
Q 023332 170 KKQIREYMA---KGYDIILRVDIQG------AQTLRRVLG-DSAVFVFLMAESETALVERLVERKT--ESREELLVRIAT 237 (284)
Q Consensus 170 ~~~i~~~l~---~g~~vvld~~~~~------~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~~ 237 (284)
...+...+. ....+|+|+.+.. +..+....+ ....+|++++| .+++.+|+..|++ ++++.+.+|+..
T Consensus 66 ~~~l~~~l~~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~-~~~~~~Rl~~R~~~dd~~~~~~~r~~~ 144 (184)
T PRK02496 66 LDLVQERLQQPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVP-DDVVVERLLARGRKDDTEEVIRRRLEV 144 (184)
T ss_pred HHHHHHHHhCcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 111222222 2356899987532 222222222 45678999997 6999999998864 356777777776
Q ss_pred HHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHH
Q 023332 238 AREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 238 ~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
+..... +. ....++.+|++++++++.++|...+
T Consensus 145 y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 145 YREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 554211 11 1224688899999999999998876
No 74
>PRK03839 putative kinase; Provisional
Probab=99.29 E-value=9.5e-11 Score=96.92 Aligned_cols=151 Identities=22% Similarity=0.229 Sum_probs=81.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
.|+|+|++||||||+++.|++.++......++..++...+.... .... ..+ .....
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~--------~~~~-----~~~-----------~~l~~ 57 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKD--------DEME-----IDF-----------DKLAY 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCC--------hhhh-----cCH-----------HHHHH
Confidence 58999999999999999999987633333232222111110000 0000 000 00011
Q ss_pred HHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHH---HHHHHHHHHHH-HhhccCC
Q 023332 172 QIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESRE---ELLVRIATARE-EIKHVKN 247 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~---~i~~rl~~~~~-e~~~~~~ 247 (284)
.+.+. ..+..+|+|+.+..+ . ....+||++++ .+++.+|+..|....+. ....++..... +. +...
T Consensus 58 ~~~~~-~~~~~vIidG~~~~l------~-~~~~vi~L~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~-~~~r 127 (180)
T PRK03839 58 FIEEE-FKEKNVVLDGHLSHL------L-PVDYVIVLRAH-PKIIKERLKERGYSKKKILENVEAELVDVCLCEA-LEEK 127 (180)
T ss_pred HHHHh-ccCCCEEEEeccccc------c-CCCEEEEEECC-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 11111 135678999865422 1 34567999997 69999999988643221 11122221100 11 1112
Q ss_pred ccEEEECCC-CCHHHHHHHHHHHHHHHHhh
Q 023332 248 FDYVVVNAE-GKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 248 ~D~vivn~~-~~~e~~~~~i~~~i~~~~~~ 276 (284)
..++.+|++ .++++++++|.+.+.....+
T Consensus 128 ~~~~~Id~~~~s~eev~~~I~~~l~~~~~~ 157 (180)
T PRK03839 128 EKVIEVDTTGKTPEEVVEEILELIKSGKKR 157 (180)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHhcCCCC
Confidence 334556664 58999999999999875433
No 75
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.27 E-value=1.1e-10 Score=97.68 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc--hhh----hhhhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE--LLE----YALVYG 163 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~ 163 (284)
|++|+|.|++||||||+++.|++.+...+..... .+.+. +...| +.+........ -.. ...+..
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~-~~~~~-~~~~~--------~~i~~~~~~~~~~~~~~~~~~~l~~~ 72 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLF-TREPG-GTPIG--------EKIRELLLNENDEPLTDKAEALLFAA 72 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE-EeCCC-CChHH--------HHHHHHHcCCCccCCCHHHHHHHHHH
Confidence 8999999999999999999999887532211111 11111 10000 01111100000 000 000000
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHhCC--CeEEEEEecCCHHHHHHHHHhhccC
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVLGD--SAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~g~--~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
+........+...+..|..||+|-.. ..+..+...+.. ++.+||+++| .+++.+|+..|...
T Consensus 73 ~r~~~~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~-~~~~~~R~~~r~~~ 151 (195)
T TIGR00041 73 DRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDID-PEVALERLRKRGEL 151 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHhcCCc
Confidence 00111123455667788889999321 122233333322 6789999997 69999999998763
Q ss_pred CHH-----HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHH
Q 023332 227 SRE-----ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266 (284)
Q Consensus 227 ~~~-----~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i 266 (284)
..+ ...+++...+.++... ...+.++|++++++++.++|
T Consensus 152 ~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~id~~~~~e~v~~~i 195 (195)
T TIGR00041 152 DREEFEKLDFFEKVRQRYLELADK-EKSIHVIDATNSVEEVEQDI 195 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEeCCCCHHHHHhhC
Confidence 322 2233344444433322 33466678889999988764
No 76
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.27 E-value=1.8e-11 Score=100.84 Aligned_cols=162 Identities=12% Similarity=0.053 Sum_probs=83.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-chhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-ELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~y 166 (284)
++|++|+|+|++||||||+++.|++.+...+ ..+.+++.+.+......+ .+..... ...+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g-----------------~~v~~id~D~~~~~~~~~~~~~~~~r--~~~~ 62 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAG-----------------YPVEVLDGDAVRTNLSKGLGFSKEDR--DTNI 62 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----------------CeEEEEcCccHHHHHhcCCCCChhhH--HHHH
Confidence 4589999999999999999999988753111 001111111110000000 0000000 0000
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC---HHHHHHHHHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES---REELLVRIATARE 240 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~---~~~i~~rl~~~~~ 240 (284)
.......+.....|..|++++.. .....+.... ....+||+++| .+++.+|. .|.-.. .+.+...+. .+.
T Consensus 63 ~~~~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~-~~~~~v~l~~~-~e~~~~R~-~~~l~~~~~~~~i~~~~~-~~~ 138 (175)
T PRK00889 63 RRIGFVANLLTRHGVIVLVSAISPYRETREEVRANI-GNFLEVFVDAP-LEVCEQRD-VKGLYAKARAGEIKHFTG-IDD 138 (175)
T ss_pred HHHHHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhc-CCeEEEEEcCC-HHHHHHhC-cccHHHHHHcCCCCCCcc-cCC
Confidence 00011222344668888888653 2334444443 45678999998 68888884 111000 001111111 111
Q ss_pred HhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 241 EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 241 e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+.....+|+++..++.++++++++|.+.+..
T Consensus 139 ~~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 139 PYEPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 11111346888877778999999999999965
No 77
>PRK14529 adenylate kinase; Provisional
Probab=99.27 E-value=2.2e-10 Score=97.56 Aligned_cols=163 Identities=17% Similarity=0.205 Sum_probs=98.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
-|+|+||+||||||+++.|++.++..++...+..|....+ +..+ ...+...+.++.+..... ...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~---~t~l----g~~i~~~i~~G~lvpdei--------~~~ 66 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGG---GTEL----GKKAKEYIDRGDLVPDDI--------TIP 66 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccC---CChH----HHHHHHHHhccCcchHHH--------HHH
Confidence 3789999999999999999998864444445544432111 1110 112222233333332211 112
Q ss_pred HHHHHHHc--CCcEEEEecHHHHHHHH------HHhC-CCeEEEEEecCCHHHHHHHHHhh-------------------
Q 023332 172 QIREYMAK--GYDIILRVDIQGAQTLR------RVLG-DSAVFVFLMAESETALVERLVER------------------- 223 (284)
Q Consensus 172 ~i~~~l~~--g~~vvld~~~~~~~~l~------~~~g-~~~~~I~l~~p~~~~l~~Rl~~R------------------- 223 (284)
.+.+.+.. .+.+|+|+.+....+.. ...| ....+|++++| .+++.+|+..|
T Consensus 67 lv~~~l~~~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~-~~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~ 145 (223)
T PRK14529 67 MILETLKQDGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLP-REVAKNRIMGRRLCKNDNNHPNNIFIDAIK 145 (223)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHhhCCccccccCCcccccccCCCc
Confidence 22233322 46799999774333332 1122 45678999998 49999998765
Q ss_pred ----------------ccCC-HHHHHHHHHHHHHHh-------hccC------CccEEEECCCCCHHHHHHHHHHHH
Q 023332 224 ----------------KTES-REELLVRIATAREEI-------KHVK------NFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 224 ----------------~~~~-~~~i~~rl~~~~~e~-------~~~~------~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.+++ ++.+.+|++.+..+. ++.. .--++.+|++++++++.+.|.+.+
T Consensus 146 ~~~~~cd~~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~~~~~V~~~i~~~l 222 (223)
T PRK14529 146 PDGDVCRVCGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEGSIDEIKETLLKQL 222 (223)
T ss_pred ccCCcCcCcCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 2243 568999998876641 1221 112778899999999999998775
No 78
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.27 E-value=1.4e-10 Score=93.27 Aligned_cols=147 Identities=21% Similarity=0.284 Sum_probs=85.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC--CCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR--PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+.|+|+|.||+||||+++.|+ .++...........+.. .+...+...+.+
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~v--------------------------- 52 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIV--------------------------- 52 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEe---------------------------
Confidence 469999999999999999999 44321111111110000 000011111111
Q ss_pred CHHHHHHHHH---cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHh---
Q 023332 169 PKKQIREYMA---KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEI--- 242 (284)
Q Consensus 169 ~~~~i~~~l~---~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~--- 242 (284)
..+.....++ ....+|+|+...++ ++..+.+|.+.++ +++|.+||+.|+. +++.+.+.+.+.....
T Consensus 53 D~d~~~~~le~~~~~~~~Ivd~H~~hl------~~~~dlVvVLR~~-p~~L~~RLk~RGy-~~eKI~ENveAEi~~vi~~ 124 (180)
T COG1936 53 DVDKLRKRLEELLREGSGIVDSHLSHL------LPDCDLVVVLRAD-PEVLYERLKGRGY-SEEKILENVEAEILDVILI 124 (180)
T ss_pred eHHHHHHHHHHHhccCCeEeechhhhc------CCCCCEEEEEcCC-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHH
Confidence 1122222333 45688999877654 2224677888886 5999999999987 5666666655543321
Q ss_pred hccCCcc--EEEECCCCCHHHHHHHHHHHHHHH
Q 023332 243 KHVKNFD--YVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 243 ~~~~~~D--~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
+....+| +.+..++.+++++++.|.+++...
T Consensus 125 EA~E~~~~v~evdtt~~s~ee~~~~i~~ii~~~ 157 (180)
T COG1936 125 EAVERFEAVIEVDTTNRSPEEVAEEIIDIIGGG 157 (180)
T ss_pred HHHHhcCceEEEECCCCCHHHHHHHHHHHHccc
Confidence 1112223 344455579999999999999863
No 79
>PRK13975 thymidylate kinase; Provisional
Probab=99.27 E-value=3e-10 Score=95.07 Aligned_cols=167 Identities=17% Similarity=0.245 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc---chhhhhhhccccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN---ELLEYALVYGDYK 166 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~y 166 (284)
|++|+|.|++||||||+++.|++.++..... .+... ..| ..+...+... .......+..+.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~------~~~~~-~~g--------~~ir~~~~~~~~~~~~~~~~f~~~r~ 66 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTC------EPTDG-KIG--------KLIREILSGSKCDKETLALLFAADRV 66 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeE------CCCCC-hHH--------HHHHHHHccCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999987531111 01100 000 0111111100 0000000000111
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH--------------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI--------------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREE 230 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~--------------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~ 230 (284)
.. ...++..+.. ..||+|-.+ .....+......++.+||+++| .+++.+|+..|... ....
T Consensus 67 ~~-~~~i~~~~~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~-~e~~~~Rl~~r~~~~~~~~~ 143 (196)
T PRK13975 67 EH-VKEIEEDLKK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVD-IEEALKRMETRDKEIFEKKE 143 (196)
T ss_pred HH-HHHHHHHHcC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCC-HHHHHHHHhccCccccchHH
Confidence 00 1123344444 568888322 1111122212246688999997 69999999988632 2233
Q ss_pred HHHHHHHHHHHhhc----cCCccEEEECCC-CCHHHHHHHHHHHHHHHH
Q 023332 231 LLVRIATAREEIKH----VKNFDYVVVNAE-GKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 231 i~~rl~~~~~e~~~----~~~~D~vivn~~-~~~e~~~~~i~~~i~~~~ 274 (284)
+.+++...+.+... ...+.++++|++ .+++++.++|.+.+.+..
T Consensus 144 ~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~~~~eev~~~I~~~i~~~~ 192 (196)
T PRK13975 144 FLKKVQEKYLELANNEKFMPKYGFIVIDTTNKSIEEVFNEILNKIKDKI 192 (196)
T ss_pred HHHHHHHHHHHHHhhcccCCcCCEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 33444444433321 123446667764 799999999999887643
No 80
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.26 E-value=3.3e-11 Score=100.18 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=90.3
Q ss_pred EEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-ccch---hhhhhhcccccCCCH
Q 023332 95 ISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-KNEL---LEYALVYGDYKGIPK 170 (284)
Q Consensus 95 l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~yg~~~ 170 (284)
|-|+.||||||+++.|.+.+...+.. ...++++..... | ..+..+.. .... ....-+.........
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~~~-g--------~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~ 70 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGSTPI-G--------ELIRELLRSESELSPEAEALLFAADRAWHLA 70 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSSHH-H--------HHHHHHHHTSSTCGHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCChH-H--------HHHHHHHhcccCCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999998887533332 122222221110 1 11111111 0000 000001111101112
Q ss_pred HHHHHHHHcCCcEEEEecH---------------HHHHHHHHHhC--CCeEEEEEecCCHHHHHHHHHhhcc----C-CH
Q 023332 171 KQIREYMAKGYDIILRVDI---------------QGAQTLRRVLG--DSAVFVFLMAESETALVERLVERKT----E-SR 228 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~g--~~~~~I~l~~p~~~~l~~Rl~~R~~----~-~~ 228 (284)
..+...++.|..||+|-.+ .....+...+. .++.++|++++ +++..+|+..|+. . ..
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~-pe~~~~R~~~r~~~~~~~~~~ 149 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVD-PEEALKRIAKRGEKDDEEEED 149 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECC-HHHHHHHHHHTSSTTTTTTHH
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecC-HHHHHHHHHcCCccchHHHHH
Confidence 3556788899999999322 23334444433 67889999997 6999999999987 1 12
Q ss_pred HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHH
Q 023332 229 EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266 (284)
Q Consensus 229 ~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i 266 (284)
.....++...+.++.. ....++++|++.++|++.++|
T Consensus 150 ~~~~~~~~~~y~~l~~-~~~~~~iid~~~~~e~v~~~I 186 (186)
T PF02223_consen 150 LEYLRRVREAYLELAK-DPNNWVIIDASRSIEEVHEQI 186 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTEEEEETTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc-CCCCEEEEECCCCHHHHHhhC
Confidence 3344555555555443 456789999999999999886
No 81
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.26 E-value=5.6e-10 Score=100.17 Aligned_cols=160 Identities=17% Similarity=0.211 Sum_probs=88.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
+.++..|+|+|++||||||+++.|++.++ +.++..+...+... | ++..++........|.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg-~~~id~D~~i~~~~----G-----~~i~ei~~~~G~~~fr---------- 189 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLG-VPFVELNREIEREA----G-----LSVSEIFALYGQEGYR---------- 189 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEeHHHHHHHHh----C-----CCHHHHHHHHCHHHHH----------
Confidence 45688999999999999999999999875 22221111111111 1 1112211111100110
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--------CHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--------SREELL 232 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--------~~~~i~ 232 (284)
....+.+.+++.....+|+.... ..+..+. ...++|||.+| .+++.+|+.+|... ..+.+.
T Consensus 190 ~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~----~~~~~V~L~a~-~e~~~~Rl~~r~~~rp~~~~~~~~e~i~ 264 (309)
T PRK08154 190 RLERRALERLIAEHEEMVLATGGGIVSEPATFDLLL----SHCYTVWLKAS-PEEHMARVRAQGDLRPMADNREAMEDLR 264 (309)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHH----hCCEEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHH
Confidence 11122334444433334444221 1222222 34678999997 69999999877532 124444
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 233 VRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 233 ~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+.++. +..+ ...+|++|.++..++++++++|.+.++...
T Consensus 265 ~~~~~-R~~~--y~~ad~~I~t~~~s~ee~~~~I~~~l~~~~ 303 (309)
T PRK08154 265 RILAS-REPL--YARADAVVDTSGLTVAQSLARLRELVRPAL 303 (309)
T ss_pred HHHHH-HHHH--HHhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 33332 2222 134899887776699999999999997654
No 82
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.9e-10 Score=89.96 Aligned_cols=150 Identities=19% Similarity=0.209 Sum_probs=90.8
Q ss_pred EcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccch-----hhhhhhcccccCCCH
Q 023332 96 SGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNEL-----LEYALVYGDYKGIPK 170 (284)
Q Consensus 96 ~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~yg~~~ 170 (284)
+|.+||||||++..|++.++ ..++ +|.+++ +++.+.+|-....+ ..|+. ...
T Consensus 1 MGVsG~GKStvg~~lA~~lg-~~fi-------------dGDdlH--p~aNi~KM~~GiPL~DdDR~pWL~-------~l~ 57 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG-AKFI-------------DGDDLH--PPANIEKMSAGIPLNDDDRWPWLE-------ALG 57 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC-Ccee-------------cccccC--CHHHHHHHhCCCCCCcchhhHHHH-------HHH
Confidence 59999999999999999886 2222 333322 34444444221111 12221 122
Q ss_pred HHHHHHHHcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC--HHHHHHHHHHHHHHhhccC
Q 023332 171 KQIREYMAKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES--REELLVRIATAREEIKHVK 246 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~--~~~i~~rl~~~~~e~~~~~ 246 (284)
+.+....+.|+.+|+-+.- ..++.+.+..-....+||++.+ .+++.+|+..|.+.- ..-+..+++.. |.. ..
T Consensus 58 ~~~~~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i~~Rm~~R~gHFM~~~ll~SQfa~L--E~P-~~ 133 (161)
T COG3265 58 DAAASLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLILERMKARKGHFMPASLLDSQFATL--EEP-GA 133 (161)
T ss_pred HHHHHhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHHHHHHHhcccCCCCHHHHHHHHHHh--cCC-CC
Confidence 2333445566766666544 2333333332245788999996 799999999998653 33344444432 221 22
Q ss_pred CccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 247 NFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 247 ~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.-|.+.++-+.+++++++++...++.
T Consensus 134 de~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 134 DEDVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred CCCEEEeeCCCCHHHHHHHHHHHHhc
Confidence 23888889989999999999998875
No 83
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.23 E-value=3.2e-12 Score=114.42 Aligned_cols=169 Identities=20% Similarity=0.314 Sum_probs=84.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhh
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (284)
...++.+..|++++|+|||||||||++|+|++... ..+.+..++..... ..+..+..+.| ++..++++
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF----------Q~yALyPh 89 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF----------QNYALYPH 89 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe----------CCccccCC
Confidence 34445578899999999999999999999999865 23333222221111 01112223333 33344445
Q ss_pred hhhccc------ccCCCHHHHHHHHHc-----CCcEEEEecH--------HHHHHHHHHhCCCeEEEEEecCCHHHHHHH
Q 023332 159 ALVYGD------YKGIPKKQIREYMAK-----GYDIILRVDI--------QGAQTLRRVLGDSAVFVFLMAESETALVER 219 (284)
Q Consensus 159 ~~~~~~------~yg~~~~~i~~~l~~-----g~~vvld~~~--------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~R 219 (284)
.++++| ..+..++.+++.++. +-.-++|-.+ +.+...+... ..+.+++++-| ...|..+
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlV-r~P~v~L~DEP-lSnLDa~ 167 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALV-RKPKVFLLDEP-LSNLDAK 167 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHh-cCCCEEEecCc-hhHhhHH
Confidence 555555 233334444332221 1112222111 2222222222 45566777776 6888888
Q ss_pred HHhhccCCHHHHHHHHHHH-----HHHhhccCCccEEEECCCCCHHH
Q 023332 220 LVERKTESREELLVRIATA-----REEIKHVKNFDYVVVNAEGKLDV 261 (284)
Q Consensus 220 l~~R~~~~~~~i~~rl~~~-----~~e~~~~~~~D~vivn~~~~~e~ 261 (284)
++...+.....+++++... ..+.|....+|.+.+.++|.+++
T Consensus 168 lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 8765544344444444321 11223334567665544454443
No 84
>PRK06696 uridine kinase; Validated
Probab=99.23 E-value=5.3e-11 Score=101.95 Aligned_cols=165 Identities=18% Similarity=0.145 Sum_probs=80.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCc--eeEe--eeccccCC-----CCCCCCcee--EecCHHHHHHhhccc---
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSL--RFVV--TATSRPMR-----PGEENGKDY--YFVSKEEFLTMIDKN--- 153 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~--~~~~--~~~~r~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~--- 153 (284)
..+.+|+|.|++||||||+++.|++.++.. ..+. .+....+. .+......+ ..++...+...+...
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~~ 99 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLGP 99 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhccC
Confidence 457899999999999999999999887421 1111 11111110 000000011 112333333221110
Q ss_pred -ch-hhhhhhcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCC
Q 023332 154 -EL-LEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK----TES 227 (284)
Q Consensus 154 -~~-~~~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~ 227 (284)
.. ......++..++.........+..+..+|+|+.+.....+...+ +.+|||++| .+++.+|+..|. +..
T Consensus 100 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~---d~~i~v~~~-~e~~~~R~~~Rd~~~~g~~ 175 (223)
T PRK06696 100 NGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLW---DYKIFLDTD-FEVSRRRGAKRDTEAFGSY 175 (223)
T ss_pred CCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhC---CEEEEEECC-HHHHHHHHHHhhhhhhCCc
Confidence 00 00000111121111110111234466788999875444444333 688999998 599999998886 222
Q ss_pred HHH---HHHHHHHHHHH----hhccCCccEEEECCC
Q 023332 228 REE---LLVRIATAREE----IKHVKNFDYVVVNAE 256 (284)
Q Consensus 228 ~~~---i~~rl~~~~~e----~~~~~~~D~vivn~~ 256 (284)
.+. +..++...... .+....+|+||.|++
T Consensus 176 ~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 176 EEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred hHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 222 22332221111 122356899987775
No 85
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.22 E-value=4.4e-10 Score=96.39 Aligned_cols=170 Identities=18% Similarity=0.219 Sum_probs=94.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..++-|+|+||+||||||+++.|++.++..++...+..|..... +..+ .......+..+.......+. .
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~---~t~l----g~~i~~~~~~G~lvpd~iv~----~ 72 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKA---KTTI----GKEIQKVVTSGNLVPDNLVI----A 72 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhc---CChH----HHHHHHHHHcCCcCCHHHHH----H
Confidence 34566999999999999999999998875555555544432110 0000 01122222222222111110 0
Q ss_pred CCHHHHHHH-HHcCCcEEEEecHHHHHHHHH--HhCCCeEEEEEecCCHHHHHHHHHhh---------------------
Q 023332 168 IPKKQIREY-MAKGYDIILRVDIQGAQTLRR--VLGDSAVFVFLMAESETALVERLVER--------------------- 223 (284)
Q Consensus 168 ~~~~~i~~~-l~~g~~vvld~~~~~~~~l~~--~~g~~~~~I~l~~p~~~~l~~Rl~~R--------------------- 223 (284)
...+.+.+. ...+..+|+|+.+....+... ..+....+|++++| .+++.+|+..|
T Consensus 73 lv~~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~-~~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~ 151 (229)
T PTZ00088 73 IVKDEIAKVTDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLP-RNILIKKLLGRRICNTCNRNFNIAHIRSDPYD 151 (229)
T ss_pred HHHHHHHhhccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCC-HHHHHHHHHcCcCCCccCCcceeccccccccc
Confidence 011122221 123567899997643333221 22356678899997 47787876544
Q ss_pred ----------------------ccCCHHHHHHHHHHHHHHhhc----c--CCccE---EEECCCCCHHHHHHHHHHH
Q 023332 224 ----------------------KTESREELLVRIATAREEIKH----V--KNFDY---VVVNAEGKLDVAVKLVESI 269 (284)
Q Consensus 224 ----------------------~~~~~~~i~~rl~~~~~e~~~----~--~~~D~---vivn~~~~~e~~~~~i~~~ 269 (284)
.+++++.+.+|++.+..+... . ...++ .++|++++++++.+.|.+.
T Consensus 152 ~pp~~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 228 (229)
T PTZ00088 152 MPPILPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLRDFDDFYRIVLQR 228 (229)
T ss_pred CCCCCCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHhh
Confidence 344578889999877654221 1 12223 3348888999988887653
No 86
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.22 E-value=6.1e-10 Score=95.13 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhh---ccCCccEEEECCC--CCHHHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEIK---HVKNFDYVVVNAE--GKLDVAVKLVES 268 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~~---~~~~~D~vivn~~--~~~e~~~~~i~~ 268 (284)
.++.+||+++| .+++.+|+.+|++..+ .+..+++...+.... +....+++++|.+ +++++++++|..
T Consensus 142 ~Pd~~i~l~~~-~~~~~~Ri~~R~~~~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~~~~~~~e~i~~~I~~ 217 (219)
T cd02030 142 PPHLVIYLDVP-VPEVQKRIKKRGDPHEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDWTEAGDTEKVVEDIEY 217 (219)
T ss_pred CCCEEEEEeCC-HHHHHHHHHHcCCchhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeCCChhhHHHHHHHHHc
Confidence 56889999997 5999999999886432 233345555444331 1245688888877 677777777653
No 87
>PRK14528 adenylate kinase; Provisional
Probab=99.21 E-value=4.3e-10 Score=93.62 Aligned_cols=163 Identities=17% Similarity=0.158 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
+.|+|+||+||||||+++.|++.++..++...+..|.... .+..+. ......+..+....... ..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~---~~~~~g----~~~~~~~~~g~lvp~~~--------~~ 66 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVK---NQTAMG----IEAKRYMDAGDLVPDSV--------VI 66 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhh---cCCHHH----HHHHHHHhCCCccCHHH--------HH
Confidence 3489999999999999999998876444433333222100 010000 00111112222111110 00
Q ss_pred HHHHHHHH---cCCcEEEEecHHHHHH---H---HHH-hCCCeEEEEEecCCHHHHHHHHHhhc------cCCHHHHHHH
Q 023332 171 KQIREYMA---KGYDIILRVDIQGAQT---L---RRV-LGDSAVFVFLMAESETALVERLVERK------TESREELLVR 234 (284)
Q Consensus 171 ~~i~~~l~---~g~~vvld~~~~~~~~---l---~~~-~g~~~~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i~~r 234 (284)
..+.+.+. ....+|+|+.+....+ + ... ....+.+|++++| .+++.+|+..|. +++++.+.+|
T Consensus 67 ~~~~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~-~~~~~~Rl~~R~~~~gr~dd~~e~i~~R 145 (186)
T PRK14528 67 GIIKDRIREADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVP-DGELLKRLLGRAEIEGRADDNEATIKNR 145 (186)
T ss_pred HHHHHHHhCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhcCccccCCCCCCHHHHHHH
Confidence 11222222 2356899986632222 2 111 1246788999998 589999998763 4578899999
Q ss_pred HHHHHHHhhc----c-CCccEEEECCCCCHHHHHHHHHHH
Q 023332 235 IATAREEIKH----V-KNFDYVVVNAEGKLDVAVKLVESI 269 (284)
Q Consensus 235 l~~~~~e~~~----~-~~~D~vivn~~~~~e~~~~~i~~~ 269 (284)
++.+...... . ...=++.+|++++++++...|...
T Consensus 146 l~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~~ 185 (186)
T PRK14528 146 LDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHh
Confidence 9877664321 1 112367788989999999888754
No 88
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.21 E-value=9e-10 Score=90.53 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=82.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
.+.|+|+|++||||||+++.|++.++ ..++..+....... |.+ ...+........|.+. .
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~-~~~vd~D~~i~~~~----g~~-----i~~~~~~~g~~~fr~~----------e 63 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN-MEFYDSDQEIEKRT----GAD-----IGWVFDVEGEEGFRDR----------E 63 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC-CcEEECCchHHHHh----CcC-----HhHHHHHhCHHHHHHH----------H
Confidence 45699999999999999999998764 32322221111111 111 1111100000011100 1
Q ss_pred HHHHHHHHHcCCcEEEEecHH-----HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC------CHHHHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDIQ-----GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE------SREELLVRIATA 238 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~-----~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~------~~~~i~~rl~~~ 238 (284)
.+.++.+... ..+|+..... ....+... ...+||+++| .+++.+|+..+... ...+....+...
T Consensus 64 ~~~l~~l~~~-~~~vi~~ggg~v~~~~~~~~l~~---~~~vv~L~~~-~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~ 138 (172)
T PRK05057 64 EKVINELTEK-QGIVLATGGGSVKSRETRNRLSA---RGVVVYLETT-IEKQLARTQRDKKRPLLQVDDPREVLEALANE 138 (172)
T ss_pred HHHHHHHHhC-CCEEEEcCCchhCCHHHHHHHHh---CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHH
Confidence 1223333333 3444443211 11122222 3578999997 69999999755321 112222333333
Q ss_pred HHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 239 REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 239 ~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+. ..+...+|++|.+++.+.++++++|.+.+++
T Consensus 139 R~-~~Y~~~Ad~~idt~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 139 RN-PLYEEIADVTIRTDDQSAKVVANQIIHMLES 171 (172)
T ss_pred HH-HHHHhhCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 32 2234558898877777999999999988764
No 89
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.20 E-value=4.1e-10 Score=95.34 Aligned_cols=181 Identities=17% Similarity=0.226 Sum_probs=86.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccCC--ceeEeeeccccCCCC-C-CCCceeEecC-----HHHHHHhh---cc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRDS--LRFVVTATSRPMRPG-E-ENGKDYYFVS-----KEEFLTMI---DK 152 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~--~~~~~~~~~r~~~~~-~-~~~~~~~~~~-----~~~~~~~~---~~ 152 (284)
|..++|.+|+|+|+||||||||++.|++.++. ...+..+........ . .....+.+.. ...+...+ ..
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~ 80 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKN 80 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHC
Confidence 45688999999999999999999999887652 222221111100000 0 0000001111 11111110 00
Q ss_pred cchhhhhhhcccccCCCHHHHHHHHHcCCcEEEEecHHHHH-HHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCC
Q 023332 153 NELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQ-TLRRVLGDSAVFVFLMAESETALVERLVERK----TES 227 (284)
Q Consensus 153 ~~~~~~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~-~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~ 227 (284)
+.......+.-.......+. ........+|+|+.+..+. .+...+ +.+||+++|. ++...|+..|. ..+
T Consensus 81 g~~v~~p~yd~~~~~~~~~~--~~~~~~~~vIieG~~~~~~~~~~~~~---d~~I~v~~~~-~~~l~R~~~R~~~~rg~~ 154 (207)
T TIGR00235 81 GSPIDVPVYDYVNHTRPKET--VHIEPKDVVILEGIMPLFDERLRDLM---DLKIFVDTPL-DIRLIRRIERDINERGRS 154 (207)
T ss_pred CCCEecccceeecCCCCCce--EEeCCCCEEEEEehhhhchHhHHHhC---CEEEEEECCh-hHHHHHHHHHHHHhhCCC
Confidence 10000000000000000000 0123345788888765442 344333 5889999984 77777776663 234
Q ss_pred HHHHHHHHHHH-HHHh-----hccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 228 REELLVRIATA-REEI-----KHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 228 ~~~i~~rl~~~-~~e~-----~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+.+..++... .... .....+|+||.++ +..+...+-+...++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~i~~~~~~Ad~vi~~~-~~~~~~~~~~~~~~~~ 204 (207)
T TIGR00235 155 LDSVIDQYRKTVRPMYEQFVEPTKQYADLIIPEG-GRNEVAINVLDTKIKH 204 (207)
T ss_pred HHHHHHHHHHhhhhhHHHhCcccccccEEEEcCC-CCchHHHHHHHHHHHH
Confidence 44444443321 1111 2235678887654 6777777766665544
No 90
>PRK12338 hypothetical protein; Provisional
Probab=99.20 E-value=1.8e-10 Score=102.60 Aligned_cols=186 Identities=20% Similarity=0.267 Sum_probs=97.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCcee----EecCHHHHHHhhcccchhh-------
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDY----YFVSKEEFLTMIDKNELLE------- 157 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~------- 157 (284)
.+.+|+|.|+|||||||+++.|++.++.......+..|+...+... ..+ +..+.+.+..+.....+..
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~-~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIG-KEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCC-cccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 4789999999999999999999999875444456666654333211 111 1122222221111100000
Q ss_pred -hhhhcccccCCCHHHHHHHHHcCCcEEEEecH--HHHHHHHHH-hCCCeEEEEEecCCHHHHHHHHHhhccCCH--HHH
Q 023332 158 -YALVYGDYKGIPKKQIREYMAKGYDIILRVDI--QGAQTLRRV-LGDSAVFVFLMAESETALVERLVERKTESR--EEL 231 (284)
Q Consensus 158 -~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~--~~~~~l~~~-~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~--~~i 231 (284)
+..-...........+...+..|..+|+++.+ ..+...... ......++++. ++.+..++|+..|...+. ...
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~~~~~~v~~~vl~-~dee~h~~Rf~~R~~~~~r~~~~ 160 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQFEENASIHFFILS-ADEEVHKERFVKRAMEIKRGGKQ 160 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhhcccCceEEEEEE-CCHHHHHHHHHHhhhccCCchhh
Confidence 00000001111223445556789999999876 233222221 11233444455 568999999988653211 011
Q ss_pred HHHHHH---HHH-HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 232 LVRIAT---ARE-EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 232 ~~rl~~---~~~-e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
...+.. ... ..+.....++.++++ .+++++++++.+.|.+....+
T Consensus 161 l~~f~~Ir~Iq~~l~~~A~e~~VpvI~N-~did~Tv~~ile~I~e~s~~i 209 (319)
T PRK12338 161 LEYFRENRIIHDHLVEQAREHNVPVIKN-DDIDCTVKKMLSYIREVCVTV 209 (319)
T ss_pred hhChHHHHHHHHHHHHhHhhCCCceeCC-CcHHHHHHHHHHHHHhheEEE
Confidence 111111 111 112234556665555 569999999999998875443
No 91
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.20 E-value=8.4e-11 Score=108.78 Aligned_cols=172 Identities=19% Similarity=0.196 Sum_probs=95.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CC--------CCCCcee----EecCHHHHHHhhccc-chhh
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PG--------EENGKDY----YFVSKEEFLTMIDKN-ELLE 157 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~----~~~~~~~~~~~~~~~-~~~~ 157 (284)
.|+|+|..||||||+++.|++ ++...+..+...++.. .+ ...|..+ ..+++..+...+..+ ....
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~ 81 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARA 81 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHH
Confidence 599999999999999999987 4433333332222200 00 0012111 124445444443221 1111
Q ss_pred hhh--hcccccCCCHHHHHHHHH--cCCcEEE-EecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHH
Q 023332 158 YAL--VYGDYKGIPKKQIREYMA--KGYDIIL-RVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELL 232 (284)
Q Consensus 158 ~~~--~~~~~yg~~~~~i~~~l~--~g~~vvl-d~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~ 232 (284)
..+ ++..+ ...+.+.++ .+..+++ ++..-....+... .+.+|+|++| .+++.+|+.+|...+.+...
T Consensus 82 ~le~i~hP~I----~~~i~~~i~~~~~~~vvv~eipLL~E~~~~~~---~D~iI~V~ap-~e~ri~Rl~~rRg~s~~~a~ 153 (395)
T PRK03333 82 VLNGIVHPLV----GARRAELIAAAPEDAVVVEDIPLLVESGMAPL---FHLVVVVDAD-VEVRVRRLVEQRGMAEADAR 153 (395)
T ss_pred HHHHhhhHHH----HHHHHHHHHhcCCCCEEEEEeeeeecCCchhh---CCEEEEEECC-HHHHHHHHHhcCCCCHHHHH
Confidence 110 11111 122223332 2333444 4333211122222 3688999997 69999999987666777777
Q ss_pred HHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 233 VRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 233 ~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.++..+....+....+|++|.|+ ++++++..++.++++..
T Consensus 154 ~ri~~Q~~~e~k~~~AD~vIdN~-~s~e~l~~~v~~~l~~~ 193 (395)
T PRK03333 154 ARIAAQASDEQRRAVADVWLDNS-GTPDELVEAVRALWADR 193 (395)
T ss_pred HHHHhcCChHHHHHhCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 77766544444456779888766 89999999999888764
No 92
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.19 E-value=1.3e-10 Score=97.73 Aligned_cols=159 Identities=13% Similarity=0.095 Sum_probs=81.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC--CceeEe--eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD--SLRFVV--TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+|.+|+|+|++||||||+++.|++.+. +.+.+. .+..++.... ...+...+.. ++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~~~~~~~~------------~~----- 81 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLGFSDADRK------------EN----- 81 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCCcCcccHH------------HH-----
Confidence 5589999999999999999999988653 111111 1111110000 0001000000 00
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCC-CeEEEEEecCCHHHHHHHHH----hhccCCHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI---QGAQTLRRVLGD-SAVFVFLMAESETALVERLV----ERKTESREELLVRI 235 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~-~~~~I~l~~p~~~~l~~Rl~----~R~~~~~~~i~~rl 235 (284)
+......+...+..|..||.+... .....+...... ..++|||++| .+++.+|.. .+.+ .+.+.. +
T Consensus 82 --~~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~-~e~~~~R~~r~l~~~~~--~~~~~~-l 155 (198)
T PRK03846 82 --IRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTP-LAICEARDPKGLYKKAR--AGEIRN-F 155 (198)
T ss_pred --HHHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCC-HHHHHhcCchhHHHHhh--cCCccC-c
Confidence 011112334566778877765432 222333333322 2457999997 688888821 1110 011111 1
Q ss_pred HHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 236 ATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
...+..++....+|++|.+++.++++++++|.+.+++
T Consensus 156 ~~~r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 156 TGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred ccccccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 1111111112346787776667899999999998865
No 93
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.19 E-value=7.2e-10 Score=91.44 Aligned_cols=165 Identities=24% Similarity=0.338 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
-|+|+|+|||||||+|+.|++.++-.++...+..|.... .+.. + .......+.++.+.+...+. +....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~---~~t~---l-g~~~k~~i~~g~lv~d~i~~----~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIA---ERTE---L-GEEIKKYIDKGELVPDEIVN----GLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhc---cCCh---H-HHHHHHHHHcCCccchHHHH----HHHHH
Confidence 489999999999999999999877555554443332111 1100 0 01111123333333222111 11122
Q ss_pred HHHHHHHcCCcEEEEecHH------HHHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhc---cCCHHHHHHHHHHHHHH
Q 023332 172 QIREYMAKGYDIILRVDIQ------GAQTLRRVLG-DSAVFVFLMAESETALVERLVERK---TESREELLVRIATAREE 241 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~------~~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~---~~~~~~i~~rl~~~~~e 241 (284)
.+.+. .....+|+|+.+. .+......+| ..+.++.+..+. +.+..|+..|. +++.+.+.+|+......
T Consensus 71 rl~~~-d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~ 148 (178)
T COG0563 71 RLDEA-DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVREDDNEETVKKRLKVYHEQ 148 (178)
T ss_pred HHHhh-cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCccccccCCHHHHHHHHHHHHhc
Confidence 22222 2122689998662 2222222333 456778999985 89999998774 66788888888876553
Q ss_pred hhcc-CCccEEEECCCCCHHHHHHHHHHHH
Q 023332 242 IKHV-KNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 242 ~~~~-~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.... ..+. +.+|+.++++++++.+.+.+
T Consensus 149 ~~pli~~y~-~~id~~~~i~~v~~~i~~~l 177 (178)
T COG0563 149 TAPLIEYYS-VTIDGSGEIEEVLADILKAL 177 (178)
T ss_pred ccchhhhhe-eeccCCCCHHHHHHHHHHhh
Confidence 3221 2233 66788899999999988765
No 94
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.18 E-value=3.6e-10 Score=94.27 Aligned_cols=153 Identities=21% Similarity=0.296 Sum_probs=84.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHH
Q 023332 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQ 172 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~ 172 (284)
|+|+|++||||||+++.|++.++..++..++..+...... .. . ...+...+..+...... .....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~---~~---~-~~~~~~~~~~g~~~~~~--------~~~~l 66 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG---TE---L-GKKAKEYIDSGKLVPDE--------IVIKL 66 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC---Ch---H-HHHHHHHHHcCCccCHH--------HHHHH
Confidence 7899999999999999999988644444333333211110 00 0 00111111111111100 01122
Q ss_pred HHHHHHc---CCcEEEEecHH---HHHHHHHHhC---CCeEEEEEecCCHHHHHHHHHhhc-------------------
Q 023332 173 IREYMAK---GYDIILRVDIQ---GAQTLRRVLG---DSAVFVFLMAESETALVERLVERK------------------- 224 (284)
Q Consensus 173 i~~~l~~---g~~vvld~~~~---~~~~l~~~~g---~~~~~I~l~~p~~~~l~~Rl~~R~------------------- 224 (284)
+...+.. +..+|+|+.+. .+..+.+... ....+|++++| .+++.+|+..|.
T Consensus 67 ~~~~l~~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~ 145 (194)
T cd01428 67 LKERLKKPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVP-DEVLIERILGRRICPVSGRVYHLGKDDVTGE 145 (194)
T ss_pred HHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCCcCCcCCcCCCcccCC
Confidence 3333332 57899998653 2223333332 56788999998 599999998875
Q ss_pred ------cCCHHHHHHHHHHHHHHhh----ccC-CccEEEECCCCCHHH
Q 023332 225 ------TESREELLVRIATAREEIK----HVK-NFDYVVVNAEGKLDV 261 (284)
Q Consensus 225 ------~~~~~~i~~rl~~~~~e~~----~~~-~~D~vivn~~~~~e~ 261 (284)
+++++.+..|+..+..... +.. ..-++.+|+++++++
T Consensus 146 ~l~~r~dd~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~~~~~ 193 (194)
T cd01428 146 PLSQRSDDNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSGDIDE 193 (194)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCCCcCc
Confidence 2346778888876654321 112 223566787776654
No 95
>PRK13948 shikimate kinase; Provisional
Probab=99.17 E-value=2.3e-09 Score=88.79 Aligned_cols=158 Identities=16% Similarity=0.121 Sum_probs=83.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
+.+..|+|+|++||||||+++.|++.++ ..++..+...+...| .+..++........|.+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg-~~~iD~D~~ie~~~g---------~si~~if~~~Ge~~fR~---------- 67 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM-LHFIDTDRYIERVTG---------KSIPEIFRHLGEAYFRR---------- 67 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC-CCEEECCHHHHHHHh---------CCHHHHHHHhCHHHHHH----------
Confidence 4568899999999999999999999875 223222211111111 11111111100001100
Q ss_pred CCHHHHHHHHHcCCcEEEE--ecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--C---C-HHHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILR--VDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT--E---S-REELLVRIA 236 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld--~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~---~-~~~i~~rl~ 236 (284)
...+.+++++..+..||.- +.+ .....+++ ...+||+++| .+++.+|+..+.+ . . .+.+.+.++
T Consensus 68 ~E~~~l~~l~~~~~~VIa~GgG~v~~~~n~~~l~~----~g~vV~L~~~-~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~ 142 (182)
T PRK13948 68 CEAEVVRRLTRLDYAVISLGGGTFMHEENRRKLLS----RGPVVVLWAS-PETIYERTRPGDRPLLQVEDPLGRIRTLLN 142 (182)
T ss_pred HHHHHHHHHHhcCCeEEECCCcEEcCHHHHHHHHc----CCeEEEEECC-HHHHHHHhcCCCCCCCCCCChHHHHHHHHH
Confidence 0112234444444333332 112 22233332 3578899997 6999999954321 1 1 123333222
Q ss_pred HHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 237 TAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 237 ~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
. +.. .+ ..+|++|.+++.++++++++|.+.+...
T Consensus 143 ~-R~~-~Y-~~a~~~i~t~~~~~~ei~~~i~~~l~~~ 176 (182)
T PRK13948 143 E-REP-VY-RQATIHVSTDGRRSEEVVEEIVEKLWAW 176 (182)
T ss_pred H-HHH-HH-HhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 2 211 12 3478888877779999999999999774
No 96
>PRK06217 hypothetical protein; Validated
Probab=99.16 E-value=5.8e-09 Score=86.56 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEe-cCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYF-VSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+.|+|+|++||||||+++.|++.++...+..+.....+. +..+.. ...+..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~-----~~~~~~~~~~~~~----------------------- 53 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPT-----DPPFTTKRPPEER----------------------- 53 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccC-----CCCccccCCHHHH-----------------------
Confidence 359999999999999999999987532222222211110 000000 000000
Q ss_pred HHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC----------CHHH----HHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE----------SREE----LLVRI 235 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~----------~~~~----i~~rl 235 (284)
...+.+.+..+..+|+|+.+..+..... ...+.+||+++| .+++.+|+..|... ..+. +.++.
T Consensus 54 ~~~~~~~~~~~~~~vi~G~~~~~~~~~~--~~~d~~i~Ld~~-~~~~~~Rl~~R~~~~~~~~~~~~~~~e~~~~~~~~~~ 130 (183)
T PRK06217 54 LRLLLEDLRPREGWVLSGSALGWGDPLE--PLFDLVVFLTIP-PELRLERLRLREFQRYGNRILPGGDMHKASLEFLEWA 130 (183)
T ss_pred HHHHHHHHhcCCCEEEEccHHHHHHHHH--hhCCEEEEEECC-HHHHHHHHHcCcccccCcccCCCCCHHHHHHHHHHHH
Confidence 1122234445678899988865433222 235678999997 69999999887521 1111 22221
Q ss_pred HHHH---------HHhhc---cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 236 ATAR---------EEIKH---VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 236 ~~~~---------~e~~~---~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.... ...+. ......+++++..++++.++++...|..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 131 ASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEDLLDEVLDHLAS 179 (183)
T ss_pred HhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 1111 00000 0113456677778999999999998864
No 97
>PRK13947 shikimate kinase; Provisional
Probab=99.16 E-value=6.3e-10 Score=91.08 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=43.1
Q ss_pred eEEEEEecCCHHHHHHHHHhhccC---CHHHHHHHHHHHHHHh-hccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVERKTE---SREELLVRIATAREEI-KHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R~~~---~~~~i~~rl~~~~~e~-~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
..+||++++ .+++.+|+..|... .......++.....+- .....+|++|.+++.++++++++|.+.+-
T Consensus 95 ~~vv~L~~~-~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~ad~~Idt~~~~~~~i~~~I~~~~~ 166 (171)
T PRK13947 95 GVVICLKAR-PEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDFADYTIDTGDMTIDEVAEEIIKAYL 166 (171)
T ss_pred CEEEEEECC-HHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHH
Confidence 368999997 69999999876432 1112223332222211 11135788888787899999999999443
No 98
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.15 E-value=1e-09 Score=88.91 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
+-|+|+|+.||||||+.+.|++.++ ..++-.|..-..+ .| ++-.++........|... ..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~-~~F~D~D~~Ie~~----~g-----~sI~eIF~~~GE~~FR~~----------E~ 62 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN-LPFIDTDQEIEKR----TG-----MSIAEIFEEEGEEGFRRL----------ET 62 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC-CCcccchHHHHHH----HC-----cCHHHHHHHHhHHHHHHH----------HH
Confidence 4589999999999999999999875 2221111000000 01 222222211111111111 12
Q ss_pred HHHHHHHHcCCcEEEEecH-----HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc------cCCH-HHHHHHHHHH
Q 023332 171 KQIREYMAKGYDIILRVDI-----QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK------TESR-EELLVRIATA 238 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~-----~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------~~~~-~~i~~rl~~~ 238 (284)
+.+++++..+..||--+.- +....++ ....+||+++| .+++.+|+.... ..+. +.+.+-++ .
T Consensus 63 ~vl~~l~~~~~~ViaTGGG~v~~~enr~~l~----~~g~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~-~ 136 (172)
T COG0703 63 EVLKELLEEDNAVIATGGGAVLSEENRNLLK----KRGIVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELEELLE-E 136 (172)
T ss_pred HHHHHHhhcCCeEEECCCccccCHHHHHHHH----hCCeEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHHHHHH-H
Confidence 3445566665444433322 2222222 23489999997 799999998322 1122 22322222 2
Q ss_pred HHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 239 REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 239 ~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+ ...|...+|+++..+..+ ++++++|.+.+....
T Consensus 137 R-~~~Y~e~a~~~~~~~~~~-~~v~~~i~~~l~~~~ 170 (172)
T COG0703 137 R-QPLYREVADFIIDTDDRS-EEVVEEILEALEGSL 170 (172)
T ss_pred H-HHHHHHhCcEEecCCCCc-HHHHHHHHHHHHHhc
Confidence 2 222334567776655444 899999998887653
No 99
>PLN02842 nucleotide kinase
Probab=99.14 E-value=9e-10 Score=103.47 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=98.6
Q ss_pred EEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHHHH
Q 023332 95 ISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIR 174 (284)
Q Consensus 95 l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~i~ 174 (284)
|+|++||||||+++.|++.++..++...+..|.... .+..+ -..+...+..+.+.....+..- ..+.++
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~---~~T~i----G~~Ire~l~~G~lvPdeiv~~l----l~drl~ 70 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVS---AGTDI----GKRAKEFMNSGRLVPDEIVIAM----VTGRLS 70 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhc---cCCHH----HHHHHHHHhCCCCCcHHHHHHH----HHHHHh
Confidence 799999999999999999886444443433332111 01100 0112222222222222111100 011111
Q ss_pred HHHHcCCcEEEEecHHHHHH---HHHHhCCCeEEEEEecCCHHHHHHHHHhhc---------------------------
Q 023332 175 EYMAKGYDIILRVDIQGAQT---LRRVLGDSAVFVFLMAESETALVERLVERK--------------------------- 224 (284)
Q Consensus 175 ~~l~~g~~vvld~~~~~~~~---l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~--------------------------- 224 (284)
........+|+|+.+....+ +......++.+|++++| .+++.+|+..|.
T Consensus 71 ~~~~~~~G~ILDGfPRt~~Qa~~Le~~~~~PDlVI~LDvp-devlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL~~ 149 (505)
T PLN02842 71 REDAKEKGWLLDGYPRSFAQAQSLEKLKIRPDIFILLDVP-DEILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARLIT 149 (505)
T ss_pred CccccCCcEEEeCCCCcHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhccccccccCCccccccCCCCcccccccccc
Confidence 11112345888986543333 22222246789999998 488889976552
Q ss_pred --cCCHHHHHHHHHHHHHHhhcc-C--CccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 225 --TESREELLVRIATAREEIKHV-K--NFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 225 --~~~~~~i~~rl~~~~~e~~~~-~--~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
+++++.+.+|+..+....... . ..-++.+|+++++++++++|.+.|.+...++.
T Consensus 150 R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~rl~~IDAsqs~EeVfeeI~~iL~~~L~~~~ 208 (505)
T PLN02842 150 RPDDTEEKVKARLQIYKKNAEAILSTYSDIMVKIDGNRPKEVVFEEISSLLSQIQKDAT 208 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhHHHhcCcEEEEEECCCCHHHHHHHHHHHHHHHHhhhh
Confidence 456788999988766544321 1 11256789989999999999999998755544
No 100
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.14 E-value=8.7e-11 Score=99.95 Aligned_cols=72 Identities=22% Similarity=0.338 Sum_probs=46.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhh
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA 159 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (284)
.++++.+.+|++++|+||||||||||++.+++... ..+.+...+... .+ .+.++.++ .++..+++|.
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v--~~--p~~~~~~v--------FQ~~~LlPW~ 87 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV--TG--PGPDIGYV--------FQEDALLPWL 87 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc--CC--CCCCEEEE--------eccCcccchh
Confidence 34444578899999999999999999999999864 333333322211 11 12233332 4455678888
Q ss_pred hhccc
Q 023332 160 LVYGD 164 (284)
Q Consensus 160 ~~~~~ 164 (284)
++.+|
T Consensus 88 Tv~~N 92 (248)
T COG1116 88 TVLDN 92 (248)
T ss_pred hHHhh
Confidence 88887
No 101
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.14 E-value=4.1e-10 Score=93.48 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCc----eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSL----RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+|.+++|+|++||||||+++.|.+.+... .....+..|+...+ +..+ +.+....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~-----~~~~-~~~~~~~--------------- 74 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK-----DLGF-SEEDRKE--------------- 74 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc-----ccCC-CHHHHHH---------------
Confidence 558999999999999999999998875311 11111111110000 0000 0000000
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH--HHHH-HHHHHh-CCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI--QGAQ-TLRRVL-GDSAVFVFLMAESETALVERLVERKT--ESREELLVRIAT 237 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~--~~~~-~l~~~~-g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~~ 237 (284)
.+......+...+..|.+||+|+.+ .... .+.... .....+||+++| .+++.+|-.++.. ...+.+. .+..
T Consensus 75 -~~~~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~e~~~~R~~~~l~~~~~~~~~~-~l~~ 151 (184)
T TIGR00455 75 -NIRRIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCP-LEVCEQRDPKGLYKKARNGEIK-GFTG 151 (184)
T ss_pred -HHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCC-HHHHHHhCchhHHHHHhcCCcc-Cccc
Confidence 0001112334567889999999865 2222 222222 124577999997 6888877321000 0000000 0100
Q ss_pred HHHHhhccCCccEEEECCCCCHHHHHHHHHHH
Q 023332 238 AREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269 (284)
Q Consensus 238 ~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~ 269 (284)
....++....+|++|.++..++++++++|.+.
T Consensus 152 ~~~~y~~p~~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 152 IDSPYEAPENPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred ccCCCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence 11112222457888776666899999988765
No 102
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.13 E-value=6.8e-10 Score=89.46 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=83.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC--CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD--SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
..+|.+|-++|+|||||||++..|.+.+- +......++..-+ .+ -..++.|-..+. .++..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR-~g--L~~dLgFs~edR----------~eniR---- 82 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR-HG--LNRDLGFSREDR----------IENIR---- 82 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh-hc--ccCCCCCChHHH----------HHHHH----
Confidence 45689999999999999999999987653 2222211111100 00 011222211111 11111
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEe--cH-HHHHHHHHHhCC-CeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRV--DI-QGAQTLRRVLGD-SAVFVFLMAESETALVERLVERKTESREELLVRIATARE 240 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~--~~-~~~~~l~~~~g~-~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~ 240 (284)
...+-++.+.++|..|++-. .+ +..+..++.++. .++-||+++| ++++.+|-- +-+- ++++.
T Consensus 83 ---RvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~RDp-------KGLY---kKAr~ 148 (197)
T COG0529 83 ---RVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERRDP-------KGLY---KKARA 148 (197)
T ss_pred ---HHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHHhcCc-------hHHH---HHHHc
Confidence 00112334456666655542 22 333445555543 4677999998 799987631 1111 11111
Q ss_pred -H----------hhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 241 -E----------IKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 241 -e----------~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+ .+.....|+++..+..++++++++|.+++....
T Consensus 149 GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~~~ 193 (197)
T COG0529 149 GEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKERK 193 (197)
T ss_pred CCCCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHhcc
Confidence 1 122234566665555799999999999997654
No 103
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.12 E-value=1.3e-09 Score=101.02 Aligned_cols=187 Identities=17% Similarity=0.142 Sum_probs=107.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCce---eEecCHHHHHHhhccc-----------
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKD---YYFVSKEEFLTMIDKN----------- 153 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------- 153 (284)
..+.+|+++|+||+||||++..|+..++...++..+..|+...+...... ++.-+...+......+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~ 332 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE 332 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence 45899999999999999999999999865556666666653222221110 0111111111110000
Q ss_pred ---chhhhhhhcccccCCCHHHHHHHHHcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC-
Q 023332 154 ---ELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES- 227 (284)
Q Consensus 154 ---~~~~~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~- 227 (284)
.|...... ...-....++..+..|.++|+|+.. ..+.......+...+.++|.+++.+..++|+..|...+
T Consensus 333 vi~Gf~~q~~~---V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~ 409 (475)
T PRK12337 333 VLRGFRDQVQQ---VAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPYQAGALVVPMLVTLPDEALHRRRFELRDRETG 409 (475)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHhcCCceEEEEEEECCHHHHHHHHHHHhhhcc
Confidence 00000000 0011234567788999999999866 33333333444566667888888999999999887543
Q ss_pred ----HHHHHHHHHHHHH----HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 228 ----REELLVRIATARE----EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 228 ----~~~i~~rl~~~~~----e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
.+...+.+...+. -++.....++-++|+ .++|++++.+.+.+-+......
T Consensus 410 ~~r~~~ky~~~f~~IR~IQdyLv~~A~~~~ipvI~n-~nid~tv~~~l~~i~~~~~~~~ 467 (475)
T PRK12337 410 ASRPRERYLRHFEEIRLIQDHLLRLARQEGVPVLPG-EDLDESIDKALEVVLRRVMAAL 467 (475)
T ss_pred CCCchhHHHHhHHHHHHHHHHHHHHHHHcCCCeecC-ccHHHHHHHHHHHHHHHHHHhc
Confidence 2333333332222 122334455555555 4699999999888877654433
No 104
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.12 E-value=2.2e-09 Score=87.96 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=41.2
Q ss_pred CeEEEEEecCCHHHHHHHHHhhccC---------C-HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 202 SAVFVFLMAESETALVERLVERKTE---------S-REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 202 ~~~~I~l~~p~~~~l~~Rl~~R~~~---------~-~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
...+||+++| .+++.+|+..|... . .+.+.+.++.....+ ....++ ++|++++++++.++|.+.++
T Consensus 94 ~~~~v~l~~~-~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y--~~~a~~-~Id~~~~~e~v~~~i~~~l~ 169 (171)
T PRK03731 94 NGIVIYLCAP-VSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALY--REVAHH-IIDATQPPSQVVSEILSALA 169 (171)
T ss_pred CCEEEEEECC-HHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHH--HHhCCE-EEcCCCCHHHHHHHHHHHHh
Confidence 3578999997 69999999876321 1 223323232221111 122344 45677899999999998875
Q ss_pred H
Q 023332 272 A 272 (284)
Q Consensus 272 ~ 272 (284)
+
T Consensus 170 ~ 170 (171)
T PRK03731 170 Q 170 (171)
T ss_pred c
Confidence 4
No 105
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=2.5e-09 Score=84.26 Aligned_cols=162 Identities=23% Similarity=0.283 Sum_probs=91.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
.-+|+++|++||||||++++|.+.++ +.+ .+|.+++. .+....|-+ +.-+......+++. ..
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~-~~F-------------~dgDd~Hp--~~NveKM~~-GipLnD~DR~pWL~-~i 73 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELG-LKF-------------IDGDDLHP--PANVEKMTQ-GIPLNDDDRWPWLK-KI 73 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhC-Ccc-------------cccccCCC--HHHHHHHhc-CCCCCcccccHHHH-HH
Confidence 34789999999999999999998875 211 23444432 333333322 11111100011111 11
Q ss_pred HHHHHHHHHcCCcEEEEecH--HHHHHHHHH-h--------C-CCeEEEEEecCCHHHHHHHHHhhccCC--HHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDI--QGAQTLRRV-L--------G-DSAVFVFLMAESETALVERLVERKTES--REELLVRI 235 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~--~~~~~l~~~-~--------g-~~~~~I~l~~p~~~~l~~Rl~~R~~~~--~~~i~~rl 235 (284)
.......+..|+.||+-+.. ..++.+... . . ....+|++.+ +.+++..|+..|...- .+-++.++
T Consensus 74 ~~~~~~~l~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~-s~evi~~Rl~~R~gHFMp~~lleSQf 152 (191)
T KOG3354|consen 74 AVELRKALASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSA-SFEVILKRLKKRKGHFMPADLLESQF 152 (191)
T ss_pred HHHHHHHhhcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeec-cHHHHHHHHhhcccccCCHHHHHHHH
Confidence 12333445588988887655 223333221 1 0 3457899999 5899999999997642 23344444
Q ss_pred HHHHHHhhccCCccEEEECCC-CCHHHHHHHHHHHHHH
Q 023332 236 ATAREEIKHVKNFDYVVVNAE-GKLDVAVKLVESIIDA 272 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~vivn~~-~~~e~~~~~i~~~i~~ 272 (284)
+.. |.......|+|-++-. .++|++++.|.+-+..
T Consensus 153 ~~L--E~p~~~e~div~isv~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 153 ATL--EAPDADEEDIVTISVKTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred Hhc--cCCCCCccceEEEeeccCCHHHHHHHHHHHHHh
Confidence 422 2222334466655443 6799999988876643
No 106
>PRK13949 shikimate kinase; Provisional
Probab=99.11 E-value=3.1e-09 Score=87.08 Aligned_cols=66 Identities=20% Similarity=0.151 Sum_probs=39.7
Q ss_pred eEEEEEecCCHHHHHHHHHhh--cc-----CCHHHHHHHHHHHHHHhh-ccCCccEEEECCCCCHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVER--KT-----ESREELLVRIATAREEIK-HVKNFDYVVVNAEGKLDVAVKLVESI 269 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R--~~-----~~~~~i~~rl~~~~~e~~-~~~~~D~vivn~~~~~e~~~~~i~~~ 269 (284)
..+||+++| .+++.+|++.+ .+ ...+.+.+.+...+.+-. ....+|++|..++.+.++++++|.+.
T Consensus 95 ~~vi~L~~~-~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~ad~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 95 GTTVYLKVS-PEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQAKIIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred CeEEEEECC-HHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHh
Confidence 578999997 69999999742 22 112333333333222211 11237877766666888998888764
No 107
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.11 E-value=7.2e-10 Score=106.79 Aligned_cols=161 Identities=14% Similarity=0.028 Sum_probs=89.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC-----ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS-----LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALV 161 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (284)
..+|.+|+|+|++||||||+++.|++.+.. ..+...+..|+...++. .| +..+-.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~-----~f-~~~er~-------------- 448 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSEL-----GF-SKEDRD-------------- 448 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCC-----CC-CHHHHH--------------
Confidence 356889999999999999999999988752 12222222222111110 00 000000
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHH
Q 023332 162 YGDYKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT--ESREELLV 233 (284)
Q Consensus 162 ~~~~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~ 233 (284)
..+......+..+++.|..||++..+ .....+.+..| ...+||+++| .+++.+|+.+.-. ...+.+..
T Consensus 449 --~~~~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~ 524 (568)
T PRK05537 449 --LNILRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKG 524 (568)
T ss_pred --HHHHHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHhccccccccchhchhhc
Confidence 00111111334678889999999754 22333333332 3468999997 6999999743210 01122211
Q ss_pred HHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 234 RIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+ ..+..+.....+|++|.++..++++++++|.+.++.
T Consensus 525 l~-~~R~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 525 FT-GISDPYEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred cc-cccccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 11 111122212356887776656899999999998875
No 108
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.10 E-value=6.1e-10 Score=99.40 Aligned_cols=120 Identities=19% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCC---------ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDS---------LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA 159 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (284)
.+.+|+|+||+|||||||+..|++.++. .+...+.++++++.++..|..+++++...+...+..+.|.++.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 3579999999999999999999988764 3455678899999999999999998877777666666666654
Q ss_pred hhcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 160 LVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 160 ~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
.+.++++.+.|+.+|+++....+.+.. ..|.. ..++..+.+++|+..+.
T Consensus 83 ----------~~~i~~i~~~gk~pIlvGGt~~Y~~al-~~g~~-----~~p~~~~~~r~~l~~~~ 131 (307)
T PRK00091 83 ----------LAAIADILARGKLPILVGGTGLYIKAL-LEGLS-----PLPPADPELRAELEALA 131 (307)
T ss_pred ----------HHHHHHHHhCCCCEEEECcHHHHHHHh-ccCCC-----CCCCCCHHHHHHHHHHH
Confidence 356778889999999987665432211 11211 34444567778887764
No 109
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.08 E-value=2.2e-09 Score=89.40 Aligned_cols=178 Identities=23% Similarity=0.289 Sum_probs=88.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC-CCc---------------ee-------EecCHHHH
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE-NGK---------------DY-------YFVSKEEF 146 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~-~~~---------------~~-------~~~~~~~~ 146 (284)
..+|+|-||+||||||+++.|++.++..++.+....|....... .+. ++ .+++-+..
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedv 83 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDV 83 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchh
Confidence 36899999999999999999999987555555444443110000 000 00 01111111
Q ss_pred HHhhcccchhhhhhhcc---cccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhh
Q 023332 147 LTMIDKNELLEYALVYG---DYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVER 223 (284)
Q Consensus 147 ~~~~~~~~~~~~~~~~~---~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R 223 (284)
...+.....-....... ..-....+..+...+.+..+|+||---+- ..++...+.||+++...+-.++|..+.
T Consensus 84 s~~ir~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGT----vV~PdA~lKiFLtAS~e~RA~RR~~q~ 159 (222)
T COG0283 84 SEEIRTEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGT----VVFPDAELKIFLTASPEERAERRYKQL 159 (222)
T ss_pred hhhhhhHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcc----eECCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 00011111111100000 00011122333445555779999743211 123345677999997533444455544
Q ss_pred ccCC----HHHHHHHHHHHHH-H----hhcc-CCccEEEECC-CCCHHHHHHHHHHHHH
Q 023332 224 KTES----REELLVRIATARE-E----IKHV-KNFDYVVVNA-EGKLDVAVKLVESIID 271 (284)
Q Consensus 224 ~~~~----~~~i~~rl~~~~~-e----~~~~-~~~D~vivn~-~~~~e~~~~~i~~~i~ 271 (284)
.... .+++.+.+.+-.. + ..+. .-.|.+++|+ +.++++++++|.++++
T Consensus 160 ~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 160 QAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 3222 3445444443221 1 1111 2346665555 4699999999999988
No 110
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.08 E-value=2.1e-09 Score=90.20 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=47.2
Q ss_pred cCCcEEEEecHHHHH-HHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHHHHHHHH-----hh-ccCC
Q 023332 179 KGYDIILRVDIQGAQ-TLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVRIATAREE-----IK-HVKN 247 (284)
Q Consensus 179 ~g~~vvld~~~~~~~-~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl~~~~~e-----~~-~~~~ 247 (284)
....+|+|+.+.... .+...+ +.+||+++|. ++..+|...|. ..+.+...+++...... ++ +...
T Consensus 98 ~~~~vI~eg~~~~~~~~~~~~~---d~~i~v~~~~-~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 173 (198)
T cd02023 98 PADVIILEGILALYDKELRDLM---DLKIFVDTDA-DVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRY 173 (198)
T ss_pred CCCEEEEechhhccchhHHhhc---CeEEEEECCh-hHHHHHHHHHHhhhcCCCHHHHHHHHHHhhhhhHHHhCccchhc
Confidence 345788887775442 333333 5789999974 77666665553 13444444555432221 12 3456
Q ss_pred ccEEEECCCCCHHHHHHHHH
Q 023332 248 FDYVVVNAEGKLDVAVKLVE 267 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~ 267 (284)
+|++|.|++ ..++.+..+.
T Consensus 174 aD~ii~~~~-~~~~~~~~~~ 192 (198)
T cd02023 174 ADVIIPRGG-DNHVAIDLIV 192 (198)
T ss_pred eeEEECCCC-CccHHHHHHH
Confidence 899987764 4545555443
No 111
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.05 E-value=2.4e-09 Score=92.01 Aligned_cols=73 Identities=22% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCcEEEEecHH-----HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc---cCCHHHHHHHHHH-HHH----HhhccC
Q 023332 180 GYDIILRVDIQ-----GAQTLRRVLGDSAVFVFLMAESETALVERLVERK---TESREELLVRIAT-ARE----EIKHVK 246 (284)
Q Consensus 180 g~~vvld~~~~-----~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~---~~~~~~i~~rl~~-~~~----e~~~~~ 246 (284)
...+|+|+.+. .+..+...+ +.+||+++| .+++.+|+..|. +.+.+++.+++.. +.. ..+...
T Consensus 137 ~~ivIvEG~~~l~~~~~~~~l~~~~---D~vi~v~~~-~~~~~~R~~~R~~~~g~s~~~~~~~~~~~~~~~~~~i~~~~~ 212 (229)
T PRK09270 137 ARLVIVEGNYLLLDEEPWRRLAGLF---DFTIFLDAP-AEVLRERLVARKLAGGLSPEAAEAFVLRNDGPNARLVLETSR 212 (229)
T ss_pred CCEEEEcCcceeeccccHHHHHhhC---CEEEEEECC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhcChHHHHHHHhcCC
Confidence 34677777553 223344333 688999997 589999999883 4567778778764 222 123557
Q ss_pred CccEEEECCC
Q 023332 247 NFDYVVVNAE 256 (284)
Q Consensus 247 ~~D~vivn~~ 256 (284)
.+|+||.|+.
T Consensus 213 ~ad~vI~n~~ 222 (229)
T PRK09270 213 PADLVLEMTA 222 (229)
T ss_pred CCCEEEEecC
Confidence 8999998774
No 112
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.04 E-value=1e-08 Score=90.72 Aligned_cols=143 Identities=18% Similarity=0.275 Sum_probs=82.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
...++|+|+|++||||||+++.|... + +..+ ++ ++...+..+ ++..
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~~-g-~~~~-------------d~-----~~~~L~~~l------~~~~-------- 49 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALEDL-G-YYCV-------------DN-----LPPSLLPKL------VELL-------- 49 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHc-C-CeEE-------------CC-----cCHHHHHHH------HHHH--------
Confidence 34679999999999999999999643 2 2111 11 122222211 1100
Q ss_pred CCHHHHHHH-HHcCCcEEEEecH--------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc-CC---HHHHHHH
Q 023332 168 IPKKQIREY-MAKGYDIILRVDI--------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT-ES---REELLVR 234 (284)
Q Consensus 168 ~~~~~i~~~-l~~g~~vvld~~~--------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~-~~---~~~i~~r 234 (284)
... ......+++|... ..+..++.. |....+||++++ .+++.+|+.++.+ .. ...+.+.
T Consensus 50 ------~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~-g~~~~iI~L~a~-~e~L~~Rl~~~rr~RPLl~~~~l~e~ 121 (288)
T PRK05416 50 ------AQSGGIRKVAVVIDVRSRPFFDDLPEALDELRER-GIDVRVLFLDAS-DEVLIRRYSETRRRHPLSGDGSLLEG 121 (288)
T ss_pred ------HhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHc-CCcEEEEEEECC-HHHHHHHHhhcccCCCccCCccHHHH
Confidence 000 0122357777642 223334443 667788999997 6999999964321 11 1122233
Q ss_pred HHHHHHHhh-ccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 235 IATAREEIK-HVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 235 l~~~~~e~~-~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+...+...+ ....+|++|.+++.+++++.++|.+.+..
T Consensus 122 I~~eR~~l~pl~~~ADivIDTs~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 122 IELERELLAPLRERADLVIDTSELSVHQLRERIRERFGG 160 (288)
T ss_pred HHHHHhhhhhHHHhCCEEEECCCCCHHHHHHHHHHHHhc
Confidence 333333222 23458988877767999999999998854
No 113
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.04 E-value=2.3e-09 Score=101.85 Aligned_cols=99 Identities=12% Similarity=0.094 Sum_probs=73.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
...+++|+++|++||||||+++.++...+ +..+ +.+.+.. |
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g-~~~v---------------------n~D~lg~-----------------~ 406 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAG-YKHV---------------------NADTLGS-----------------T 406 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcC-CeEE---------------------CcHHHHH-----------------H
Confidence 35689999999999999999999987543 2222 1221110 0
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
......+++.+.+|+.||+|.++ ..+..+++.+|.++..+++++| .+++++|++.|..
T Consensus 407 ~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p-~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 407 QNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP-LAQAKHNIAFREL 470 (526)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHhhcc
Confidence 11223567889999999999877 4667778888899999999997 6999999998864
No 114
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.03 E-value=7.4e-09 Score=82.87 Aligned_cols=115 Identities=23% Similarity=0.259 Sum_probs=61.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCC--CCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG--EENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+++|+|++||||||+++.|++.++. ..+..+..+..... ...+..+.......+... ..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~-~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~ 61 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGA-PFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQA------------------LT 61 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCC-EEEeCcccccHHHHHHHHcCCCCCccchhhHHHH------------------HH
Confidence 4789999999999999999887642 22222222210000 000100000000000000 00
Q ss_pred HHHHHHHHHcCCcEEEEecHH--HHH-HHHHH-hCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 170 KKQIREYMAKGYDIILRVDIQ--GAQ-TLRRV-LGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~--~~~-~l~~~-~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
....+..+..|..||+|+.+. ... .+... .|....+|+|.+| .+++.+|+..|...
T Consensus 62 ~~~~~~l~~~~~~vVid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~-~~~~~~R~~~R~~~ 121 (150)
T cd02021 62 DALLAKLASAGEGVVVACSALKRIYRDILRGGAANPRVRFVHLDGP-REVLAERLAARKGH 121 (150)
T ss_pred HHHHHHHHhCCCCEEEEeccccHHHHHHHHhcCCCCCEEEEEEECC-HHHHHHHHHhcccC
Confidence 011222235788999998762 111 12221 2456788999997 69999999999643
No 115
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.02 E-value=3.9e-09 Score=93.22 Aligned_cols=185 Identities=16% Similarity=0.149 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhh------cccc-hh-hhh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI------DKNE-LL-EYA 159 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-~~-~~~ 159 (284)
..|.+|+|.|++||||||++..|+..++....+..+..|+.............+....|..+. .... .+ .+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~ 169 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFE 169 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHH
Confidence 457899999999999999999999988644444455444210000000000000000111110 0000 00 000
Q ss_pred hhcccccCCCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC---HHHHHH
Q 023332 160 LVYGDYKGIPKKQIREYMAKGYDIILRVDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES---REELLV 233 (284)
Q Consensus 160 ~~~~~~yg~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~---~~~i~~ 233 (284)
.-...+..-....++..+++|..+|++|.. .........+ .....++|...+.+..++|...|.... .+....
T Consensus 170 ~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~-~~~i~~~l~i~~ee~h~~RF~~R~~~~~r~~~~y~~ 248 (301)
T PRK04220 170 RHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLEN-PNVFMFVLTLSDEEAHKARFYARARVSRRPAERYLK 248 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcC-CCEEEEEEEECCHHHHHHHHHHHHhhhCCchhhHHH
Confidence 000001111334677788899999999865 2222222233 455667777778899999988776432 111112
Q ss_pred HHHHHHH----HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 234 RIATARE----EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 234 rl~~~~~----e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
.++..+. .++.....++-++++ .+++.+++++.+.+-+..
T Consensus 249 ~~~~ir~iq~~l~~~a~~~~ip~I~n-~~i~~s~~~~~~~i~~~~ 292 (301)
T PRK04220 249 NFEIIREINDYIVEKAKKHGVPVIEN-ISIEETVDKILEIITERL 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeecC-ccHHHHHHHHHHHHHHHH
Confidence 2222111 122233334434454 469999999988887754
No 116
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.00 E-value=5.7e-09 Score=91.62 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
+|+|+|.|||||||+++.|.+.+.. .+..+..++.+.+. +....+.+. ......-+....
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~-----------------~~~~v~~i~~~~~~--~~~~~y~~~-~~Ek~~R~~l~s 62 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE-----------------KGKEVVIISDDSLG--IDRNDYADS-KKEKEARGSLKS 62 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH-----------------TT--EEEE-THHHH---TTSSS--G-GGHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh-----------------cCCEEEEEcccccc--cchhhhhch-hhhHHHHHHHHH
Confidence 7999999999999999999886531 11222223322222 111111100 000111122345
Q ss_pred HHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHHHHHHHHHHHHHhh
Q 023332 172 QIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREELLVRIATAREEIK 243 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~e~~ 243 (284)
.++..+.....||+|..+ ..+..+++.++....+|||.+| .+.+.+|-.+|... -.+++..+|..-.++..
T Consensus 63 ~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~-~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~ 141 (270)
T PF08433_consen 63 AVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCP-LETCLQRNSKRPEPERYPEETIDDMIQRFEEPD 141 (270)
T ss_dssp HHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHTT-S--S-HHHHHHHHHH---TT
T ss_pred HHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCC-HHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCC
Confidence 667788888999999766 2334566777788899999997 79999999998754 23444445544333222
Q ss_pred c---cCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 244 H---VKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 244 ~---~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
. |+..-+++...+ .+..++.|.++|.
T Consensus 142 ~~nrWD~plf~i~~~~--~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 142 PKNRWDSPLFTIDSSD--EELPLEEIWNALF 170 (270)
T ss_dssp SS-GGGS-SEEEE-TT--S---HHHHHHHHH
T ss_pred CCCCccCCeEEEecCC--CCCCHHHHHHHHH
Confidence 1 233345665332 2334455555554
No 117
>PRK06547 hypothetical protein; Provisional
Probab=99.00 E-value=4.5e-09 Score=86.29 Aligned_cols=151 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-ccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-KNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~y 166 (284)
....+|+|.|++||||||+++.|++.++...+..++ ...... +.. .....+...+. .+...... .+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~-~~~~~~----~~~---~~~~~l~~~~l~~g~~~~~~--yd~~~ 82 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDD-LYPGWH----GLA---AASEHVAEAVLDEGRPGRWR--WDWAN 82 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccc-eecccc----cCC---hHHHHHHHHHHhCCCCceec--CCCCC
Confidence 446789999999999999999998876422111111 111000 000 00011111110 00000000 01011
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHh--CCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH-Hhh
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVL--GDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-EIK 243 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~--g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-e~~ 243 (284)
+.... ...+..+..+|+++.......+.... +...++||+++| .+++.+|+.+|... ......++..+.. .++
T Consensus 83 ~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~-~~vr~~R~~~Rd~~-~~~~~~~w~~~e~~~~~ 158 (172)
T PRK06547 83 NRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGP-EALRKERALARDPD-YAPHWEMWAAQEERHFA 158 (172)
T ss_pred CCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECC-HHHHHHHHHhcCch-hhHHHHHHHHHHHHHHh
Confidence 11100 01233456788898764444444333 122388999997 69999999999865 3333344433322 222
Q ss_pred ---ccCCccEEE
Q 023332 244 ---HVKNFDYVV 252 (284)
Q Consensus 244 ---~~~~~D~vi 252 (284)
....+|+++
T Consensus 159 ~~~~~~~ad~~~ 170 (172)
T PRK06547 159 RYDPRDVADWLG 170 (172)
T ss_pred cCCChhccEEEe
Confidence 234577765
No 118
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.99 E-value=1.1e-08 Score=81.84 Aligned_cols=167 Identities=22% Similarity=0.278 Sum_probs=87.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
.++++++|.+|+||||+++.+.+.+ ..+.++-+++-........| ...+++++..+....+.. .-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~ivNyG~~Mle~A~k~g---lve~rD~~Rklp~e~Q~~-----------lq 68 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHKIVNYGDLMLEIAKKKG---LVEHRDEMRKLPLENQRE-----------LQ 68 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhceeeeHhHHHHHHHHHhC---CcccHHHHhcCCHHHHHH-----------HH
Confidence 4889999999999999999997765 11111111110000000000 001112222111000000 01
Q ss_pred HHHHHHHHHcCCcEEEEecH---------HHHH-HHHHHhCCCeEEEEEecCCHHHHHHHHHh----hccCCHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDI---------QGAQ-TLRRVLGDSAVFVFLMAESETALVERLVE----RKTESREELLVRI 235 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~---------~~~~-~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~----R~~~~~~~i~~rl 235 (284)
...++.+.+.+..+|+|... .++. .+.+.. .+..++.+.+++.+++.+|++. |..++.+++.+..
T Consensus 69 ~~Aa~rI~~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l-~pd~ivllEaDp~~Il~RR~~D~~r~Rd~es~e~i~eHq 147 (189)
T COG2019 69 AEAAKRIAEMALEIIVDTHATIKTPAGYLPGLPSWVLEEL-NPDVIVLLEADPEEILERRLRDSRRDRDVESVEEIREHQ 147 (189)
T ss_pred HHHHHHHHHhhhceEEeccceecCCCccCCCCcHHHHHhc-CCCEEEEEeCCHHHHHHHHhcccccccccccHHHHHHHH
Confidence 12334455555558888533 2222 234444 5567777777767788888754 4455667775544
Q ss_pred HHHHHH-hhcc--CCc-cEEEECCCCCHHHHHHHHHHHHHH
Q 023332 236 ATAREE-IKHV--KNF-DYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 236 ~~~~~e-~~~~--~~~-D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+.++.. +.++ ..+ =.|+.|.++.+++++.+|..+|+.
T Consensus 148 e~nR~aA~a~A~~~gatVkIV~n~~~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 148 EMNRAAAMAYAILLGATVKIVENHEGDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 433221 1221 222 246778889999999999998864
No 119
>PTZ00301 uridine kinase; Provisional
Probab=98.99 E-value=7.1e-09 Score=87.76 Aligned_cols=88 Identities=15% Similarity=0.144 Sum_probs=52.2
Q ss_pred cCCcEEEEecHHH-HHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHHHH-HHH----Hhh-ccCC
Q 023332 179 KGYDIILRVDIQG-AQTLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVRIAT-ARE----EIK-HVKN 247 (284)
Q Consensus 179 ~g~~vvld~~~~~-~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl~~-~~~----e~~-~~~~ 247 (284)
....+|+||.+.. ...+...+ +..||+++| .+++..|..+|. +.+.+.+..++.. ... ..+ ....
T Consensus 106 p~~ViIvEGi~~l~~~~l~~l~---D~~ifvd~~-~d~~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ 181 (210)
T PTZ00301 106 PKSVLIVEGILLFTNAELRNEM---DCLIFVDTP-LDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVY 181 (210)
T ss_pred CCcEEEEechhhhCCHHHHHhC---CEEEEEeCC-hhHHHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccC
Confidence 4567888987753 24555554 677999998 488777766664 2345555444433 222 112 2356
Q ss_pred ccEEEECCCCCHHHHHHHHHHHHH
Q 023332 248 FDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
+|+||.++ ++.+..+..+...+.
T Consensus 182 ADiIi~~~-~~~~~~~~~~~~~~~ 204 (210)
T PTZ00301 182 ADIIVPSW-KDNSVAVGVLRAKLN 204 (210)
T ss_pred CcEEEcCC-CcchHHHHHHHHHHH
Confidence 89888655 555566655544443
No 120
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.99 E-value=1.5e-08 Score=86.27 Aligned_cols=86 Identities=23% Similarity=0.214 Sum_probs=49.0
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc-----CCHHHHHHHHHHHHH-----Hhhcc-CC
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT-----ESREELLVRIATARE-----EIKHV-KN 247 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~-----~~~~~i~~rl~~~~~-----e~~~~-~~ 247 (284)
....+|+++...+.. .++..++.||+++| .++..+|...|.. .+.+++.+.+..-.. +...+ ..
T Consensus 119 ~~~~~Vi~Gr~~~~~----v~~~a~~~ifl~a~-~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a 193 (217)
T TIGR00017 119 KNDGIIADGRDIGTV----VFPNAEVKIFLDAS-VEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKA 193 (217)
T ss_pred hcCCEEEEEcCcceE----EeCCCCEEEEEECC-HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCC
Confidence 345799998752221 22345688999997 5776666655542 233555555543211 11111 12
Q ss_pred cc-EEEECCCCCHHHHHHHHHHH
Q 023332 248 FD-YVVVNAEGKLDVAVKLVESI 269 (284)
Q Consensus 248 ~D-~vivn~~~~~e~~~~~i~~~ 269 (284)
.| ++|.++..+++++++.|.++
T Consensus 194 ~~~i~Idts~l~ieevv~~I~~~ 216 (217)
T TIGR00017 194 DDALYLDTSNLSIDEVVEKILEY 216 (217)
T ss_pred CCeEEEECCCCCHHHHHHHHHHh
Confidence 23 44555556999999988764
No 121
>PRK07667 uridine kinase; Provisional
Probab=98.96 E-value=3.2e-09 Score=88.87 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=47.7
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH-hh---ccCCccEEE
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE-IK---HVKNFDYVV 252 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e-~~---~~~~~D~vi 252 (284)
.+..+|+|+.+.....+... .+.+|||++| .+++.+|+.+|...+.+....|+..+... +. ....+|+|+
T Consensus 119 ~~~vvIvEG~~l~~~~~~~~---~d~~v~V~~~-~~~~~~R~~~r~~~~~~~~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 119 IVGVIVIEGVFLQRKEWRDF---FHYMVYLDCP-RETRFLRESEETQKNLSKFKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred CCCEEEEEehhhhhhhHHhh---ceEEEEEECC-HHHHHHHHhcccHhHHHHHHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 35788999988544444443 3788999998 69999999999877777777776544332 21 234567665
No 122
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.96 E-value=1.4e-08 Score=96.23 Aligned_cols=89 Identities=17% Similarity=0.176 Sum_probs=50.9
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHH----hhcc--CCHHHHHHHHHHHHH-H----hhcc-C
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLV----ERKT--ESREELLVRIATARE-E----IKHV-K 246 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~----~R~~--~~~~~i~~rl~~~~~-e----~~~~-~ 246 (284)
.+..+|+|+..-+.. .++...+.||++++ .+++.+|.. +|+. .+.+.+.+.+..-.. + .... .
T Consensus 402 ~~~~iV~eGRDigtv----V~P~AdlKIfL~As-~evRa~RR~~~l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~ 476 (512)
T PRK13477 402 EKGGLVAEGRDIGTH----VFPDAELKIFLTAS-VEERARRRALDLQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRK 476 (512)
T ss_pred hcCCEEEEcccceeE----EcCCCCEEEEEECC-HHHHHHHHHhhhhhCCCccCCHHHHHHHHHHHHhhhcccccccccc
Confidence 345789997542221 12234688999997 688888743 3432 223444444332111 1 1111 2
Q ss_pred Ccc-EEEECCCCCHHHHHHHHHHHHHH
Q 023332 247 NFD-YVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 247 ~~D-~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..| ++|.+++.++++++++|.+.+++
T Consensus 477 a~dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 477 ADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred cCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 234 55555657999999999999864
No 123
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.96 E-value=1.2e-08 Score=85.15 Aligned_cols=56 Identities=14% Similarity=0.216 Sum_probs=36.7
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhhcc---CCccEEEECCCC
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEIKHV---KNFDYVVVNAEG 257 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~~~~---~~~D~vivn~~~ 257 (284)
.++.+||++++ .+++.+|+.+|++..+ .+..+++...+.++... ....++++|++.
T Consensus 124 ~pd~~i~l~~~-~~~~~~Ri~~R~r~~e~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~~ 186 (193)
T cd01673 124 PPDLVIYLDAS-PETCLKRIKKRGRPEEQGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDANE 186 (193)
T ss_pred CCCEEEEEeCC-HHHHHHHHHhcCcHhhhcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECCc
Confidence 57789999997 5999999999875322 23345555554443221 345678888764
No 124
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.96 E-value=1.9e-09 Score=91.81 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=48.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHH----Hhhcccch
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFL----TMIDKNEL 155 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~ 155 (284)
..++.+..|++++++|||||||||+++++-+... |..|.+ +|.++..++..++. ..+++-.+
T Consensus 19 ~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie------------pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 19 DVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE------------PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred eeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC------------CCCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 3444578899999999999999999999998865 444543 55555544444333 23455555
Q ss_pred hhhhhhccc
Q 023332 156 LEYALVYGD 164 (284)
Q Consensus 156 ~~~~~~~~~ 164 (284)
+++.++..|
T Consensus 87 FPh~Tv~eN 95 (309)
T COG1125 87 FPHLTVAEN 95 (309)
T ss_pred CCCccHHHH
Confidence 666665555
No 125
>PRK00625 shikimate kinase; Provisional
Probab=98.95 E-value=1.9e-08 Score=82.69 Aligned_cols=155 Identities=14% Similarity=0.098 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
.|+|+|.+||||||+++.|++.++...+..+....+.. +... +.+..++........|.... .+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~-----g~~~-~~~i~eif~~~Ge~~fr~~E----------~~ 65 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY-----HGAL-YSSPKEIYQAYGEEGFCREE----------FL 65 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh-----CCCC-CCCHHHHHHHHCHHHHHHHH----------HH
Confidence 48999999999999999999987533333332221111 0000 01122211111111111110 01
Q ss_pred HHHHHHHcCCcEEEEecH-----HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC----CHHHHHHHHHHHHHHh
Q 023332 172 QIREYMAKGYDIILRVDI-----QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE----SREELLVRIATAREEI 242 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~-----~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~----~~~~i~~rl~~~~~e~ 242 (284)
.++. +..+..||..+.. +.+..+ .....+||+++| .+++.+|+..|... ..+.+.+.+..-...+
T Consensus 66 ~l~~-l~~~~~VIs~GGg~~~~~e~~~~l----~~~~~Vv~L~~~-~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y 139 (173)
T PRK00625 66 ALTS-LPVIPSIVALGGGTLMIEPSYAHI----RNRGLLVLLSLP-IATIYQRLQKRGLPERLKHAPSLEEILSQRIDRM 139 (173)
T ss_pred HHHH-hccCCeEEECCCCccCCHHHHHHH----hcCCEEEEEECC-HHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHH
Confidence 1222 2233334433211 222222 234678999997 69999999988642 2334433333222222
Q ss_pred hccCCccEE------EECCCCCHHHHHHHHHHHH
Q 023332 243 KHVKNFDYV------VVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 243 ~~~~~~D~v------ivn~~~~~e~~~~~i~~~i 270 (284)
...+|++ +..+..++.++.+.+...+
T Consensus 140 --~~~ad~~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 140 --RSIADYIFSLDHVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred --HHHCCEEEeCCCcccCCCCCHHHHHHHHHHHh
Confidence 2235554 3333457777777766554
No 126
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.94 E-value=1.1e-08 Score=81.89 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 023332 93 IVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
|+|+|++||||||+++.|++.++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998875
No 127
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.93 E-value=4.1e-09 Score=84.64 Aligned_cols=112 Identities=13% Similarity=0.151 Sum_probs=58.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-chhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-ELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~yg 167 (284)
+|.+|.|+|.||||||||++.|.+.+... |...++++.+.+...+..+ .|-...+ .. .+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~-----------------g~~~~~LDgD~lR~~l~~dl~fs~~dR-~e-~~r 61 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFAR-----------------GIKVYLLDGDNLRHGLNADLGFSKEDR-EE-NIR 61 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHT-----------------TS-EEEEEHHHHCTTTTTT--SSHHHH-HH-HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHc-----------------CCcEEEecCcchhhccCCCCCCCHHHH-HH-HHH
Confidence 47899999999999999999998765310 1112222222222111100 0000000 00 000
Q ss_pred CCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCC-CeEEEEEecCCHHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDI---QGAQTLRRVLGD-SAVFVFLMAESETALVERL 220 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~-~~~~I~l~~p~~~~l~~Rl 220 (284)
...+.+..+.++|..||+.... +....+++.++. ..+.||+++| .+++.+|-
T Consensus 62 r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~-~e~~~~RD 117 (156)
T PF01583_consen 62 RIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP-LEVCRKRD 117 (156)
T ss_dssp HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES--HHHHHHHT
T ss_pred HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC-HHHHHHhC
Confidence 1122344567788888887533 333444555532 4788999997 79998873
No 128
>COG4639 Predicted kinase [General function prediction only]
Probab=98.92 E-value=4e-08 Score=77.71 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI 235 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl 235 (284)
....++.+..|+..|+|++. ..+..++..+|...++|+++.| .+.+.+|...|.+.-.+++..++
T Consensus 59 ~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp-~~~c~aRNk~~~Rqv~~~VI~r~ 129 (168)
T COG4639 59 YKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTP-LELCLARNKLRERQVPEEVIPRM 129 (168)
T ss_pred HHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCC-HHHHHHHhhccchhCCHHHHHHH
Confidence 34667889999999999977 4556678888999999999998 69999997666554444443443
No 129
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.92 E-value=5.6e-09 Score=91.49 Aligned_cols=71 Identities=28% Similarity=0.327 Sum_probs=53.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh--------hc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM--------ID 151 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~--------~~ 151 (284)
..++.++.|++++|+|.||||||||.|+|-+... |..|++ +|.++..++..++..+ ++
T Consensus 46 ~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie------------pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ 113 (386)
T COG4175 46 DASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE------------PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ 113 (386)
T ss_pred cceeeecCCeEEEEEecCCCCHHHHHHHHhccCC------------CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh
Confidence 3445688999999999999999999999998875 566654 6777777777766543 34
Q ss_pred ccchhhhhhhccc
Q 023332 152 KNELLEYALVYGD 164 (284)
Q Consensus 152 ~~~~~~~~~~~~~ 164 (284)
+..+++|.++.+|
T Consensus 114 ~FaLlPhrtVl~N 126 (386)
T COG4175 114 SFALLPHRTVLEN 126 (386)
T ss_pred hhccccchhHhhh
Confidence 5566677776666
No 130
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.90 E-value=6.1e-09 Score=102.21 Aligned_cols=160 Identities=13% Similarity=0.081 Sum_probs=88.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC----CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD----SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+|.+|+++|.+||||||+++.|+..+. ...++..+..|+...+ +.. .+.+....
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~---~~~---~~~~~r~~--------------- 516 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR---DLG---FSDADRVE--------------- 516 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC---CCC---CCHHHHHH---------------
Confidence 4589999999999999999999987753 1222333333332110 100 01111110
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH--HHHHHHHHHhC--CCeEEEEEecCCHHHHHHHHHhhccCC---HHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI--QGAQTLRRVLG--DSAVFVFLMAESETALVERLVERKTES---REELLVRIA 236 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g--~~~~~I~l~~p~~~~l~~Rl~~R~~~~---~~~i~~rl~ 236 (284)
.|....+.+...++.|..||+|+.. ...+....... ....+||+++| .+++.+|. .|+-.. .+.+. .+.
T Consensus 517 -~~~~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~-~r~L~~~~~~~~l~-~l~ 592 (632)
T PRK05506 517 -NIRRVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARD-PKGLYAKARAGEIK-NFT 592 (632)
T ss_pred -HHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhC-Ccchhhhccccccc-ccc
Confidence 1111123445567889999999764 22222222221 24578999997 68888884 232110 11111 111
Q ss_pred HHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 237 TAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 237 ~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..+..++....+|++|.+++.++++++++|.+.+..
T Consensus 593 ~~r~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 593 GIDSPYEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred ccccCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 111112212346777776667999999999999865
No 131
>PRK08118 topology modulation protein; Reviewed
Probab=98.90 E-value=1.3e-08 Score=83.21 Aligned_cols=97 Identities=25% Similarity=0.314 Sum_probs=56.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
-|.|+|++||||||+++.|++.++......+..... .++...+.+++. +
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~--------~~w~~~~~~~~~-----------------------~ 51 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK--------PNWEGVPKEEQI-----------------------T 51 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc--------cCCcCCCHHHHH-----------------------H
Confidence 489999999999999999998765211111111000 001111111111 1
Q ss_pred HHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhh
Q 023332 172 QIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVER 223 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R 223 (284)
.+++++ .+...|+|+.+....... +...+.+||+++| .+++..|+.+|
T Consensus 52 ~~~~~~-~~~~wVidG~~~~~~~~~--l~~~d~vi~Ld~p-~~~~~~R~~~R 99 (167)
T PRK08118 52 VQNELV-KEDEWIIDGNYGGTMDIR--LNAADTIIFLDIP-RTICLYRAFKR 99 (167)
T ss_pred HHHHHh-cCCCEEEeCCcchHHHHH--HHhCCEEEEEeCC-HHHHHHHHHHH
Confidence 122333 346789999775433222 2245788999998 58888888777
No 132
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.90 E-value=1.4e-08 Score=83.99 Aligned_cols=60 Identities=22% Similarity=0.175 Sum_probs=40.0
Q ss_pred CCcEEEEecH-------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 023332 180 GYDIILRVDI-------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE 241 (284)
Q Consensus 180 g~~vvld~~~-------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e 241 (284)
+..||+|... +.+-...+.. ....+|++.+| .+++.+|-..|+.--++++.+++..-+++
T Consensus 74 n~~VIvDdtNYyksmRrqL~ceak~~~-tt~ciIyl~~p-lDtc~rrN~ergepip~Evl~qly~RfEe 140 (261)
T COG4088 74 NYLVIVDDTNYYKSMRRQLACEAKERK-TTWCIIYLRTP-LDTCLRRNRERGEPIPEEVLRQLYDRFEE 140 (261)
T ss_pred ceEEEEecccHHHHHHHHHHHHHHhcC-CceEEEEEccC-HHHHHHhhccCCCCCCHHHHHHHHHhhcC
Confidence 6688888644 2222333333 67788999998 69999999888876566665665543333
No 133
>PLN02199 shikimate kinase
Probab=98.89 E-value=1.1e-07 Score=83.73 Aligned_cols=160 Identities=13% Similarity=0.094 Sum_probs=82.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+|..|+|+|.+||||||+++.|++.++...+..+....+... | .+..++........|.+.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~----G-----~sI~eIf~~~GE~~FR~~---------- 161 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN----G-----TSVAEIFVHHGENFFRGK---------- 161 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc----C-----CCHHHHHHHhCHHHHHHH----------
Confidence 377899999999999999999998775222222211111000 1 111111111111111100
Q ss_pred CHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHh-----hcc---CCHHHH---
Q 023332 169 PKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVE-----RKT---ESREEL--- 231 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~-----R~~---~~~~~i--- 231 (284)
..+.++++.. ...+|+...- ..+..+. ...+||+++| .+++.+||.. |.- .+.+.+
T Consensus 162 E~e~L~~L~~-~~~~VIStGGG~V~~~~n~~~L~-----~G~vV~Ldas-~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~ 234 (303)
T PLN02199 162 ETDALKKLSS-RYQVVVSTGGGAVIRPINWKYMH-----KGISIWLDVP-LEALAHRIAAVGTDSRPLLHDESGDAYSVA 234 (303)
T ss_pred HHHHHHHHHh-cCCEEEECCCcccCCHHHHHHHh-----CCeEEEEECC-HHHHHHHHhhcCCCCCCcCCCCCcchhhhH
Confidence 1122333333 3345554211 2222222 2478999997 6999999985 321 112111
Q ss_pred HHHHHHHHH--HhhccCCccEEEE------------CCCCCHHHHHHHHHHHHHHHHh
Q 023332 232 LVRIATARE--EIKHVKNFDYVVV------------NAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 232 ~~rl~~~~~--e~~~~~~~D~viv------------n~~~~~e~~~~~i~~~i~~~~~ 275 (284)
.+.+...+. ...|.. +|++|. .++.++++++.+|.+.+.+...
T Consensus 235 ~~~L~~L~~~R~plY~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~ 291 (303)
T PLN02199 235 FKRLSAIWDERGEAYTN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLE 291 (303)
T ss_pred HHHHHHHHHHHHHHHHh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHh
Confidence 122222221 112233 888876 3457899999999999988754
No 134
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.89 E-value=2e-08 Score=79.65 Aligned_cols=118 Identities=25% Similarity=0.282 Sum_probs=64.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
+|+|+|++||||||+++.|++.++...+..+ .+..+.+...... ......+. .....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~-----------------~i~~e~~~~~~~~--~~~~~~i~----~~l~~ 57 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG-----------------GIRTEEVGKLASE--VAAIPEVR----KALDE 57 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc-----------------cCCHHHHHHHHHH--hcccHhHH----HHHHH
Confidence 5899999999999999999987652121111 0112222111000 00000000 00111
Q ss_pred HHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHh-----hccCCHHHHHHHHHHH
Q 023332 172 QIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVE-----RKTESREELLVRIATA 238 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~-----R~~~~~~~i~~rl~~~ 238 (284)
.+.+ +..+..+|+|+....+. + ++..+.+||+.+| .+.+.+|+.+ |...+.+++.+++...
T Consensus 58 ~~~~-~~~~~~~Vidg~~~~~~-~---~~~~~~~i~l~~~-~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~ 123 (147)
T cd02020 58 RQRE-LAKKPGIVLEGRDIGTV-V---FPDADLKIFLTAS-PEVRAKRRAKQLQAKGEGVDLEEILAEIIER 123 (147)
T ss_pred HHHH-HhhCCCEEEEeeeeeeE-E---cCCCCEEEEEECC-HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 2222 33455789998653221 1 2234688999997 5888899888 4455777776766654
No 135
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.88 E-value=1.2e-07 Score=74.51 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCcee--EecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDY--YFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.-|.|+|-+|+||||++..|++..+..++.+++..+.....+.....| ++++.+..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv---------------------- 65 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKV---------------------- 65 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHH----------------------
Confidence 348999999999999999999987655555555443322211111111 11221111
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHH-----HHHHHhh
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIA-----TAREEIK 243 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~-----~~~~e~~ 243 (284)
.+.++..+.. ..+|+|-.-..+ +.++ ..++++.+.+|. .+|-.||..|+. ++..+...++ ...++..
T Consensus 66 -~D~Le~~m~~-Gg~IVDyHgCd~--Fper--wfdlVvVLr~~~-s~LY~RL~sRgY-~e~Ki~eNiecEIfgv~~eea~ 137 (176)
T KOG3347|consen 66 -LDELEPLMIE-GGNIVDYHGCDF--FPER--WFDLVVVLRTPN-SVLYDRLKSRGY-SEKKIKENIECEIFGVVLEEAR 137 (176)
T ss_pred -HHHHHHHHhc-CCcEEeecccCc--cchh--heeEEEEEecCc-hHHHHHHHHcCC-CHHHHhhhcchHHHHHHHHHHH
Confidence 1233344444 456777533221 1122 235777889986 999999999985 4454543332 2222333
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
.....+.|..-.+...+++...+..++....+-
T Consensus 138 eSy~~~iV~eL~s~~~Eem~~ni~ri~~w~~~w 170 (176)
T KOG3347|consen 138 ESYSPKIVVELQSETKEEMESNISRILNWTRMW 170 (176)
T ss_pred HHcCCcceeecCcCCHHHHHHHHHHHHHHHHHH
Confidence 233345555544455677777777776665443
No 136
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.87 E-value=2e-09 Score=91.02 Aligned_cols=90 Identities=22% Similarity=0.283 Sum_probs=62.7
Q ss_pred ccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--C
Q 023332 57 TQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--N 134 (284)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~ 134 (284)
+.++..+....|++-..+.++++. +++|++++|+||||||||||+|.+.+.+. |..|++ +
T Consensus 7 ~~I~vr~v~~~fG~~~Ild~v~l~------V~~Gei~~iiGgSGsGKStlLr~I~Gll~------------P~~GeI~i~ 68 (263)
T COG1127 7 PLIEVRGVTKSFGDRVILDGVDLD------VPRGEILAILGGSGSGKSTLLRLILGLLR------------PDKGEILID 68 (263)
T ss_pred ceEEEeeeeeecCCEEEecCceee------ecCCcEEEEECCCCcCHHHHHHHHhccCC------------CCCCeEEEc
Confidence 445666666666666666666665 78899999999999999999999999875 566654 6
Q ss_pred CceeEecCHHHHHHh-------hcccchhhhhhhccc
Q 023332 135 GKDYYFVSKEEFLTM-------IDKNELLEYALVYGD 164 (284)
Q Consensus 135 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 164 (284)
|.++.-++.++.... ++++.++...++++|
T Consensus 69 G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eN 105 (263)
T COG1127 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFEN 105 (263)
T ss_pred CcchhccCHHHHHHHHhheeEEeeccccccccchhHh
Confidence 777666666544333 234444555556665
No 137
>PRK07261 topology modulation protein; Provisional
Probab=98.87 E-value=2.5e-08 Score=81.87 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
.|+|+|++|||||||++.|++.++...+..+. .. ...++...+.+++ .+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~-~~-------~~~~~~~~~~~~~-----------------------~~ 50 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT-LH-------FQPNWQERDDDDM-----------------------IA 50 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC-EE-------eccccccCCHHHH-----------------------HH
Confidence 48999999999999999998876421111111 00 0000000111111 12
Q ss_pred HHHHHHHcCCcEEEEecHHHHH--HHHHHhCCCeEEEEEecCCHHHHHHHHHhh
Q 023332 172 QIREYMAKGYDIILRVDIQGAQ--TLRRVLGDSAVFVFLMAESETALVERLVER 223 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~--~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R 223 (284)
.+...+..+. +|+|+++.... .... ..+.+||++.| ..++..|+.+|
T Consensus 51 ~~~~~~~~~~-wIidg~~~~~~~~~~l~---~ad~vI~Ld~p-~~~~~~R~lkR 99 (171)
T PRK07261 51 DISNFLLKHD-WIIDGNYSWCLYEERMQ---EADQIIFLNFS-RFNCLYRAFKR 99 (171)
T ss_pred HHHHHHhCCC-EEEcCcchhhhHHHHHH---HCCEEEEEcCC-HHHHHHHHHHH
Confidence 3445566655 99999985422 2222 33678999998 58888887666
No 138
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.87 E-value=2.1e-08 Score=86.00 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=50.2
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHH-Hhhc----cCCHHHHHHHHHHHHH-H----hhc-cCC
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERL-VERK----TESREELLVRIATARE-E----IKH-VKN 247 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl-~~R~----~~~~~~i~~rl~~~~~-e----~~~-~~~ 247 (284)
....+|+++...+.. .+....+.|||++|. ++..+|. +++. ..+.+++.+.+..-.. + ... ...
T Consensus 121 ~~~~~Vi~GR~~~~~----vl~~a~~~ifl~a~~-e~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~ 195 (225)
T PRK00023 121 REPGLVMDGRDIGTV----VFPDAELKIFLTASA-EERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPA 195 (225)
T ss_pred hCCCEEEEecChheE----EeCCCCEEEEEECCH-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccccccccc
Confidence 445789998532211 122346789999974 6554543 3221 2344455444443222 1 111 122
Q ss_pred ccEEEECCC-CCHHHHHHHHHHHHHHH
Q 023332 248 FDYVVVNAE-GKLDVAVKLVESIIDAE 273 (284)
Q Consensus 248 ~D~vivn~~-~~~e~~~~~i~~~i~~~ 273 (284)
.|++++|++ .+++++++.|.+++++.
T Consensus 196 ~d~l~IDTs~l~~ee~v~~I~~~i~~~ 222 (225)
T PRK00023 196 EDALLLDTSGLSIEEVVEKILALVEEK 222 (225)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 454556554 49999999999999764
No 139
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.86 E-value=6.2e-08 Score=80.61 Aligned_cols=26 Identities=38% Similarity=0.600 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
-++|+|.|+.|+|||||+++|+++++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 47899999999999999999999987
No 140
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.86 E-value=8.5e-09 Score=90.82 Aligned_cols=71 Identities=15% Similarity=0.176 Sum_probs=44.6
Q ss_pred cCCcEEEEecHHHHH-HHHHHhCCCeEEEEEecCCHHHHHH----HHHhhccCCHHHHHHHHHHHHHHhh-----ccCCc
Q 023332 179 KGYDIILRVDIQGAQ-TLRRVLGDSAVFVFLMAESETALVE----RLVERKTESREELLVRIATAREEIK-----HVKNF 248 (284)
Q Consensus 179 ~g~~vvld~~~~~~~-~l~~~~g~~~~~I~l~~p~~~~l~~----Rl~~R~~~~~~~i~~rl~~~~~e~~-----~~~~~ 248 (284)
....+|+|+.+.... .+...+ +..||+++|. ++..+ |..+|.+.+.+++.+++........ ....+
T Consensus 95 ~~~ivIvEG~~~l~~~~l~~~~---D~~I~vd~~~-e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r~~~~~~~I~P~~~~A 170 (273)
T cd02026 95 PTKIVVIEGLHPLYDERVRELL---DFSVYLDISD-EVKFAWKIQRDMAERGHSLEDVLASIEARKPDFEAYIDPQKQYA 170 (273)
T ss_pred CCCEEEEeeehhhCchhhhhhc---cEEEEEECCh-hHHHHHHHHHHHHHhCCCHHHHHHHHHhhchhHHHHhccccccC
Confidence 346788898764322 344433 6889999984 77744 4444445577778788765544333 24678
Q ss_pred cEEEE
Q 023332 249 DYVVV 253 (284)
Q Consensus 249 D~viv 253 (284)
|+||.
T Consensus 171 DvVI~ 175 (273)
T cd02026 171 DVVIQ 175 (273)
T ss_pred cEEEE
Confidence 88874
No 141
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.84 E-value=3.6e-08 Score=82.92 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=25.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.+|+|.|+|||||||+++.|...++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4468999999999999999999998876
No 142
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.83 E-value=2.1e-09 Score=89.51 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=36.9
Q ss_pred hhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 60 AAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+..+.|+....+.++++. +.+|++++|+|||||||||++|+|...-
T Consensus 4 ~i~~l~K~fg~~~VLkgi~l~------v~~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 4 EIKNLSKSFGDKEVLKGISLS------VEKGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEeeeEEeCCeEEecCccee------EcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 344445555655555555554 7789999999999999999999997764
No 143
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.1e-08 Score=89.29 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=37.8
Q ss_pred hhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CCceeEe
Q 023332 62 VKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR-DSLRFVV 121 (284)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~~ 121 (284)
....+.++...++.+ +++.++.|++++|+|||||||||++|+|++.. +..+.+.
T Consensus 6 ~~~~~~~~~~~a~~d------i~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~ 60 (345)
T COG1118 6 NNVKKRFGAFGALDD------ISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 (345)
T ss_pred hhhhhhccccccccc------ceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence 333444444444443 33457889999999999999999999999985 3444443
No 144
>PRK07429 phosphoribulokinase; Provisional
Probab=98.81 E-value=1.8e-08 Score=90.74 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=45.7
Q ss_pred cCCcEEEEecHHHHH-HHHHHhCCCeEEEEEecCCHHHHHHH----HHhhccCCHHHHHHHHHHHHHHhh-----ccCCc
Q 023332 179 KGYDIILRVDIQGAQ-TLRRVLGDSAVFVFLMAESETALVER----LVERKTESREELLVRIATAREEIK-----HVKNF 248 (284)
Q Consensus 179 ~g~~vvld~~~~~~~-~l~~~~g~~~~~I~l~~p~~~~l~~R----l~~R~~~~~~~i~~rl~~~~~e~~-----~~~~~ 248 (284)
....+|+|+.+..+. .+... .+..||+++| .++...| ...|.+.+.+++.++++.+..... ....+
T Consensus 104 p~~iVIvEG~~~l~~~~lr~~---~D~~I~Vda~-~evr~~Rri~Rd~~rrG~s~eei~~~i~~r~pd~~~yI~P~k~~A 179 (327)
T PRK07429 104 PNKIVVVEGLHPLYDERVREL---YDFKVYLDPP-EEVKIAWKIKRDMAKRGHTYEQVLAEIEAREPDFEAYIRPQRQWA 179 (327)
T ss_pred CCcEEEEechhhcCcHhHHhh---CCEEEEEECC-HHHHHHHHHHHHHhhcCCCHHHHHHHHHHhCccHhhhhcccccCC
Confidence 356788998763332 33333 3688999997 5777644 333344567778788776554333 24678
Q ss_pred cEEEECC
Q 023332 249 DYVVVNA 255 (284)
Q Consensus 249 D~vivn~ 255 (284)
|+||.+-
T Consensus 180 DiVI~~~ 186 (327)
T PRK07429 180 DVVIQFL 186 (327)
T ss_pred CEEEEcC
Confidence 9887754
No 145
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.80 E-value=1.9e-08 Score=95.67 Aligned_cols=172 Identities=16% Similarity=0.221 Sum_probs=88.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHH-----HHHh---hcccchhhhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEE-----FLTM---IDKNELLEYAL 160 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-----~~~~---~~~~~~~~~~~ 160 (284)
...+|+|.|||||||||+++.|++.++..+.+..+........ .++.+..... +.+. +..+.-...
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~~~~~~----i~~nfD~P~a~D~d~L~enL~~Lr~GksV~i-- 137 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRI----IDGNFDDPRLTDYDTLLDNIHDLKAGKSVQV-- 137 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcceecchhh----hCccCCChhhcchhHHHHHHHHHhCCCceec--
Confidence 3578999999999999999999988764444443332211100 1111111111 1111 111111111
Q ss_pred hcccccCCCHH-HH---HHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhh----ccCCHHHHH
Q 023332 161 VYGDYKGIPKK-QI---REYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVER----KTESREELL 232 (284)
Q Consensus 161 ~~~~~yg~~~~-~i---~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R----~~~~~~~i~ 232 (284)
..|..... .. ...+.....+|+||.+.....++..+ +..||+++|....+.+|+.++ ++ +.+.+.
T Consensus 138 ---PiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~~Lr~Ll---DlkIFVDtdvDirL~RRI~RD~~eRGr-s~EsVi 210 (656)
T PLN02318 138 ---PIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSEKLRPLL---DLRVSVTGGVHFDLVKRVLRDIQRAGQ-EPEEII 210 (656)
T ss_pred ---CccccccCcccCCceeecCCCcEEEEechhhccHhHHhhC---CEEEEEcCCccHHHHHHHHHHHHHhCC-CHHHHH
Confidence 11221110 00 01234567899999887667777665 688999976445566676443 33 445554
Q ss_pred HHHHHH-HH----Hhhc-cCCccEEEEC-----C---------CCCHHHHHHHHHHHHHHH
Q 023332 233 VRIATA-RE----EIKH-VKNFDYVVVN-----A---------EGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 233 ~rl~~~-~~----e~~~-~~~~D~vivn-----~---------~~~~e~~~~~i~~~i~~~ 273 (284)
.++... .. ..+. ...+|++|+| . .+..+-.+++|...+...
T Consensus 211 ~q~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~ 271 (656)
T PLN02318 211 HQISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSED 271 (656)
T ss_pred HHHHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhc
Confidence 444332 11 1222 3467888866 1 012244666666666654
No 146
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.80 E-value=6.8e-09 Score=83.34 Aligned_cols=128 Identities=23% Similarity=0.299 Sum_probs=71.3
Q ss_pred EEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHHHH
Q 023332 95 ISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIR 174 (284)
Q Consensus 95 l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~i~ 174 (284)
|+|||||||||+++.|++.++..++...+..|.... .+.. ....+...+.++..+....+ .+.+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~---~~s~----~g~~i~~~l~~g~~vp~~~v--------~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIK---SDSE----LGKQIQEYLDNGELVPDELV--------IELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHH---TTSH----HHHHHHHHHHTTSS--HHHH--------HHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHh---hhhH----HHHHHHHHHHhhccchHHHH--------HHHHH
Confidence 689999999999999999886444444443332110 0000 01122223333333322111 11222
Q ss_pred HHH---HcCCcEEEEecHHHHH---HHHH----HhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 023332 175 EYM---AKGYDIILRVDIQGAQ---TLRR----VLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE 241 (284)
Q Consensus 175 ~~l---~~g~~vvld~~~~~~~---~l~~----~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e 241 (284)
..+ ...+.+|+|+.+.... .+.. ....+..+|++++| .+.+.+|+.. ++++.+.+|++.....
T Consensus 66 ~~l~~~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~-~~~~~~R~~~---d~~~~i~~Rl~~y~~~ 138 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCP-DETLIERLSQ---DNEEVIKKRLEEYREN 138 (151)
T ss_dssp HHHHSGGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE---HHHHHHHHHT---GSHHHHHHHHHHHHHH
T ss_pred HHHhhhcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccc-hhhhhhhccc---CCHHHHHHHHHHHHHH
Confidence 222 2357899999773332 2332 22245578999997 5899999877 6788899998876653
No 147
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.80 E-value=1.6e-07 Score=90.55 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=84.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
...|+|+|.+||||||+.+.|++.++...+..+... ... .| ++..++........|.+ ..
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~i-e~~----~g-----~si~eif~~~Ge~~FR~----------~E 65 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEI-ERE----IG-----MSIPSYFEEYGEPAFRE----------VE 65 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHH-HHH----HC-----cCHHHHHHHHHHHHHHH----------HH
Confidence 456899999999999999999998752222211100 000 01 12222111111111111 01
Q ss_pred HHHHHHHHHcCCcEEEEe--c----HHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc---C---CHHHHHHHHHH
Q 023332 170 KKQIREYMAKGYDIILRV--D----IQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT---E---SREELLVRIAT 237 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~--~----~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~---~---~~~~i~~rl~~ 237 (284)
.+.+++++... .+|+.. . .+....+.+.......+||++++ .+++.+|+..+.. . ..+.+.+-++.
T Consensus 66 ~~~l~~~~~~~-~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~-~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~ 143 (542)
T PRK14021 66 ADVVADMLEDF-DGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDAD-PKEAMERANRGGGRPMLNGDANKRWKKLFKQ 143 (542)
T ss_pred HHHHHHHHhcC-CeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECC-HHHHHHHHhCCCCCCCCCCCcHHHHHHHHHH
Confidence 12233334333 344432 1 12333332222123478999997 6999999864321 1 12333332221
Q ss_pred HHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 238 AREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 238 ~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+ ...+...+|++|..+..++++++++|.+.+....
T Consensus 144 -R-~~~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~~~ 178 (542)
T PRK14021 144 -R-DPVFRQVANVHVHTRGLTPQAAAKKLIDMVAERT 178 (542)
T ss_pred -H-HHHHHhhCCEEEECCCCCHHHHHHHHHHHHHhcc
Confidence 2 2223456899888776799999999999997643
No 148
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.79 E-value=7e-09 Score=83.20 Aligned_cols=61 Identities=25% Similarity=0.322 Sum_probs=47.7
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHhh
Q 023332 78 AFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTMI 150 (284)
Q Consensus 78 ~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (284)
.+.+..++.+.+|++++|+||||||||||.++++...+ +..|.. .|+++.....+.|...+
T Consensus 17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis------------p~~G~l~f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS------------PTSGTLLFEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC------------CCCceEEEcCccccccChHHHHHHH
Confidence 34555666688899999999999999999999998876 556654 57777777777776553
No 149
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.79 E-value=4.1e-09 Score=91.12 Aligned_cols=59 Identities=31% Similarity=0.367 Sum_probs=43.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM 149 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~ 149 (284)
+...+++.+++|++++|+||||||||||+++|++.+. |..|++ +|.++..++..++.+.
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~------------p~~G~V~l~g~~i~~~~~kelAk~ 77 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK------------PKSGEVLLDGKDIASLSPKELAKK 77 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC------------CCCCEEEECCCchhhcCHHHHhhh
Confidence 4445555688899999999999999999999999875 444443 5555555555555544
No 150
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.78 E-value=2.6e-08 Score=83.40 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=40.3
Q ss_pred CCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHHHHHHHHhh-----ccCCcc
Q 023332 180 GYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVRIATAREEIK-----HVKNFD 249 (284)
Q Consensus 180 g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl~~~~~e~~-----~~~~~D 249 (284)
...+|++|.+... ..++..+ +..|||+++ .++...|...|. +.+.+++.+++...+.... ....+|
T Consensus 107 ~~ivIvEG~~~l~~~~l~~l~---D~~ifld~~-~~~~l~Rri~RD~~~rG~~~~~~~~~~~~~~~~~~~~I~p~~~~AD 182 (194)
T PF00485_consen 107 SDIVIVEGIYALYDEELRDLF---DLKIFLDAD-EDLRLERRIQRDVAERGRSPEEVIAQYERVRPGYERYIEPQKERAD 182 (194)
T ss_dssp -SEEEEEETTTTSSHCHGGG----SEEEEEEE--HHHHHHHHHHHHHHHS-S-HHHHHHHHHTHHHHHHHCTGGGGGG-S
T ss_pred CCEEEEcccceeeeeeecccc---eeEEEeccc-HHHHHHHHhhhhccccCCcceeEEEEeecCChhhhhheeccccccE
Confidence 4567888766433 2344443 688999997 576666654443 2355666666654443322 235789
Q ss_pred EEEECCC
Q 023332 250 YVVVNAE 256 (284)
Q Consensus 250 ~vivn~~ 256 (284)
+||.+..
T Consensus 183 ivi~~~~ 189 (194)
T PF00485_consen 183 IVIPSGP 189 (194)
T ss_dssp EEEESCT
T ss_pred EEECCCC
Confidence 9987654
No 151
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.77 E-value=3.1e-08 Score=82.30 Aligned_cols=45 Identities=13% Similarity=-0.008 Sum_probs=32.1
Q ss_pred HcCCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 178 AKGYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 178 ~~g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
.....||+|+.+... ..+...+ +..||+++| .+++.+|..+|...
T Consensus 109 ~~~~iViVEG~~l~~~~~l~~l~---D~~Ifvd~~-~d~~~~Rr~~R~~~ 154 (187)
T cd02024 109 EDLHILIVDGFLLYNYKPLVDLF---DIRYFLRVP-YETCKRRREARTGY 154 (187)
T ss_pred CCCcEEEEechHhcCCHHHHhhc---CceeEecCC-HHHHHHHHHHcCCc
Confidence 335578999877433 3454443 788999997 69999999888643
No 152
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.77 E-value=2.7e-08 Score=84.96 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+|+|.|+|||||||+++.|++.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 153
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.76 E-value=2.4e-08 Score=80.13 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=30.6
Q ss_pred HHHHHHcCCcEEEEecHH--H-HHHHHHHh-CCCeEEEEEecCCHHHHHHHH
Q 023332 173 IREYMAKGYDIILRVDIQ--G-AQTLRRVL-GDSAVFVFLMAESETALVERL 220 (284)
Q Consensus 173 i~~~l~~g~~vvld~~~~--~-~~~l~~~~-g~~~~~I~l~~p~~~~l~~Rl 220 (284)
++.+++.|..||+|..+. . ...++... +.+..+||+.+| .+++.+|.
T Consensus 64 a~~l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~-~e~~~~R~ 114 (149)
T cd02027 64 AKLLADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTP-LEVCEQRD 114 (149)
T ss_pred HHHHHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHhC
Confidence 345667899999998662 1 11122111 367788999997 68888774
No 154
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.5e-07 Score=80.00 Aligned_cols=186 Identities=18% Similarity=0.208 Sum_probs=100.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCc---eeEecCHHHHHHhhccc-------ch
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGK---DYYFVSKEEFLTMIDKN-------EL 155 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------~~ 155 (284)
.+..+.+|.|-|+||.||||++..|+..++--..+..+-.|+..-+..... .++.-+...|..+.... .|
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF 164 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGF 164 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhH
Confidence 356789999999999999999999999987333333333333111111100 00101111121111100 01
Q ss_pred hhhhhhcccccCCCHHHHHHHHHcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC-----H
Q 023332 156 LEYALVYGDYKGIPKKQIREYMAKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES-----R 228 (284)
Q Consensus 156 ~~~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~-----~ 228 (284)
.++.. ....-...-++..+++|.++|+++-. .++..-... +...+..++..++.+..+.|+..|.+.+ .
T Consensus 165 ~dqa~---~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~-~~n~~~~~l~i~dee~Hr~RF~~R~~~t~~~rp~ 240 (299)
T COG2074 165 EDQAS---AVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL-GNNVFMFMLYIADEELHRERFYDRIRYTHASRPG 240 (299)
T ss_pred HHHhH---HHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh-ccceEEEEEEeCCHHHHHHHHHHHHHHHhccCch
Confidence 11110 00011123567788999999999855 222111111 2445566677777899999998887543 2
Q ss_pred HHHHHHHHHHHHH----hhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 229 EELLVRIATAREE----IKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 229 ~~i~~rl~~~~~e----~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
....+.+...+.- ++.+..++.=++++ .+++++++++.+.+.+...+
T Consensus 241 ~Ryl~yf~EiR~I~Dyl~~~Are~gVPvI~n-~di~etv~~il~~i~~~~~r 291 (299)
T COG2074 241 GRYLEYFKEIRTIHDYLVERAREHGVPVIEN-DDIDETVDRILEDIRKRTVR 291 (299)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCeecc-ccHHHHHHHHHHHHHHHHHH
Confidence 2233333332221 22234555544444 35999999999998876544
No 155
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.7e-09 Score=100.81 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=68.4
Q ss_pred HHHhhhHHhhc----ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeE
Q 023332 66 ELLRSLEASLG----HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYY 139 (284)
Q Consensus 66 ~~~~~~~~~~~----~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~ 139 (284)
..|.++.+.|. +.+..+.++.+++|++++|+||||+||||++..|.+.|+ |..|.+ ||.++.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~------------PtsG~IllDG~~i~ 533 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD------------PTSGRILLDGVPIS 533 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEECCeehh
Confidence 33445555552 345556666788899999999999999999999999987 666654 777777
Q ss_pred ecCHHHHHHh---hcccchhhhhhhcccc-cCCCH
Q 023332 140 FVSKEEFLTM---IDKNELLEYALVYGDY-KGIPK 170 (284)
Q Consensus 140 ~~~~~~~~~~---~~~~~~~~~~~~~~~~-yg~~~ 170 (284)
.++...+.+. +.+...++..++.+|+ ||...
T Consensus 534 ~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~ 568 (716)
T KOG0058|consen 534 DINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN 568 (716)
T ss_pred hcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC
Confidence 6776666554 4577778888888884 87653
No 156
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.3e-08 Score=83.98 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=60.1
Q ss_pred hhhhhHHHHhhhH-HhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CCceeEeee---ccccCCCCCCC
Q 023332 60 AAVKKAELLRSLE-ASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR-DSLRFVVTA---TSRPMRPGEEN 134 (284)
Q Consensus 60 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~~~~---~~r~~~~~~~~ 134 (284)
+..+..+.|+... ++.+++|. +..|++++|.|+||+||||++|+|+..+ |..+.+..+ +.+.|... ..
T Consensus 3 ~v~~l~K~y~~~v~AvrdVSF~------ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~v-rr 75 (245)
T COG4555 3 EVTDLTKSYGSKVQAVRDVSFE------AEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFV-RR 75 (245)
T ss_pred eeeehhhhccCHHhhhhheeEE------eccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHH-hh
Confidence 3445566666644 56677776 6779999999999999999999999885 333333222 22222110 11
Q ss_pred CceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHHHHH
Q 023332 135 GKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIRE 175 (284)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~i~~ 175 (284)
...+.+-...-|. .-...++..+++.+|+....+++.
T Consensus 76 ~IGVl~~e~glY~----RlT~rEnl~~Fa~L~~l~~~~~ka 112 (245)
T COG4555 76 KIGVLFGERGLYA----RLTARENLKYFARLNGLSRKEIKA 112 (245)
T ss_pred hcceecCCcChhh----hhhHHHHHHHHHHHhhhhhhHHHH
Confidence 1111111111122 224456667777778776655444
No 157
>PLN02348 phosphoribulokinase
Probab=98.72 E-value=5.7e-08 Score=88.64 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.+|+|.|+|||||||+++.|+..++
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999988764
No 158
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.72 E-value=2.6e-07 Score=74.74 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=38.5
Q ss_pred eEEEEEecCCHHHHHHHHHhhccC----CHH---HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVERKTE----SRE---ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R~~~----~~~---~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
..+||++.+ .+++.+|+..+... ... .+...+. .+ ...+....|+++..+..++++++++|.+.|+
T Consensus 86 g~vI~L~~~-~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R-~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 86 GLVIYLDAD-PEELAERLRARDNRPLLKGKMEHEEILELLF-ER-EPLYEQAADIVVDTDGSPPEEIAEEILEFLK 158 (158)
T ss_dssp SEEEEEE---HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HH-HHHHHHHSSEEEETSSCHHHHHHHHHHHHH-
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HH-HHHHHhcCeEEEeCCCCCHHHHHHHHHHHhC
Confidence 578999996 79999999877651 111 1222222 11 1122234566665554455999999998874
No 159
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.2e-07 Score=76.42 Aligned_cols=125 Identities=24% Similarity=0.283 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
+.+.+|.+++++||||||||||++.+++... ..+.+.....+...+|. ...+.| ++..+++|.++.+
T Consensus 26 L~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga--ergvVF----------Q~~~LlPWl~~~d 93 (259)
T COG4525 26 LTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA--ERGVVF----------QNEALLPWLNVID 93 (259)
T ss_pred eeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc--cceeEe----------ccCccchhhHHHH
Confidence 3467799999999999999999999999854 33443333222211221 122333 3344566666665
Q ss_pred c------ccCCCHHHHHHH----HH------cCCcEEEE--ecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHh
Q 023332 164 D------YKGIPKKQIREY----MA------KGYDIILR--VDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVE 222 (284)
Q Consensus 164 ~------~yg~~~~~i~~~----l~------~g~~vvld--~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~ 222 (284)
| .-|..+++..+. +. .++..|.. +.....--+++.+-.++..++++-| .-.+..=.++
T Consensus 94 NvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEP-fgAlDa~tRe 169 (259)
T COG4525 94 NVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEP-FGALDALTRE 169 (259)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCc-hhhHHHHHHH
Confidence 5 334444332222 11 12223333 2222222234444477788888887 5665443333
No 160
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.69 E-value=1.7e-08 Score=99.29 Aligned_cols=74 Identities=19% Similarity=0.182 Sum_probs=57.4
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
.....++.+++|+.++|+|.||||||||+|.|.+.+. |..|.+ +|.+...++...+.+. +.++
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~------------p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~ 555 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK------------PQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEeHHhcCHHHHHhheeEEccc
Confidence 3444455678899999999999999999999999886 566654 6777777777777665 3577
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
.+++..++.+|
T Consensus 556 ~~Lf~gSI~eN 566 (709)
T COG2274 556 PFLFSGSIREN 566 (709)
T ss_pred chhhcCcHHHH
Confidence 77777777777
No 161
>KOG0708 consensus Membrane-associated guanylate kinase MAGUK (contains PDZ, SH3, HOOK and GUK domains) [Nucleotide transport and metabolism]
Probab=98.69 E-value=4.8e-07 Score=80.84 Aligned_cols=165 Identities=25% Similarity=0.328 Sum_probs=122.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc-cCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.+.+.|+||. |--+...|... .+.|..+..++++.. .+++.+.+..+.|++...+.+++|++
T Consensus 187 ~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~~t 249 (359)
T KOG0708|consen 187 LRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLYGT 249 (359)
T ss_pred cCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCccee
Confidence 4558999998 77788888655 447777766665542 55777788889999999988899999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH-HhhccCC
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-EIKHVKN 247 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-e~~~~~~ 247 (284)
..+.|+++.+.|+.||+|....+...+.... ..+++|||.+-+.+.++++-. ..+.++-.+.+++++. |-+....
T Consensus 250 sv~si~~va~k~~HCiLdv~~~ai~rLq~~~-IyPIvIfIr~ks~~~i~e~~~---~~t~~~ake~~e~a~klEqe~~~~ 325 (359)
T KOG0708|consen 250 SVASIREVAEKGKHCLLDVGGDAIRRLQRNQ-IYPIVIFIRVKSKKQIKERNL---KITGEQAKELLERARKLEQELDRY 325 (359)
T ss_pred hHHHHHHHhcCCCceEEecCcchHHHHHhcc-eeceEEEEEechHHHHHHHhc---ccchHHHHHHHHHHHHhHhhhhhc
Confidence 9999999999999999999998888887764 778999999977655555442 2234444444554444 3333344
Q ss_pred ccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 248 FDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
+..++- .+++++++.+|..+|..++.+.
T Consensus 326 ~t~vv~--~~s~e~i~~qvk~~I~~Eq~k~ 353 (359)
T KOG0708|consen 326 FTLVVQ--GGSLEELLSQVKDIIEDEQKKV 353 (359)
T ss_pred eEEEEe--cccHHHHHHHHHHHHHHhhCCe
Confidence 555554 3789999999999999988764
No 162
>PLN02165 adenylate isopentenyltransferase
Probab=98.69 E-value=1.5e-07 Score=84.36 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+|.+++|+||+|||||||+..|++.++
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 5588999999999999999999999875
No 163
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.66 E-value=3.6e-07 Score=90.91 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred cEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc-CCHHHHHHHHHHHHH----HhhccCCc-cEEEE-C
Q 023332 182 DIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT-ESREELLVRIATARE----EIKHVKNF-DYVVV-N 254 (284)
Q Consensus 182 ~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~-~~~~~i~~rl~~~~~----e~~~~~~~-D~viv-n 254 (284)
.+|+|+---+.. .++...+-||++++ .+++.+|-..+.. .+.+++.+.+..-.. ...+...+ |.+++ +
T Consensus 139 ~~v~eGRdigtv----v~p~a~~K~~l~A~-~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~R~~~pl~~~~da~~idt 213 (712)
T PRK09518 139 GIVAEGRDITTV----VAPDAEVRILLTAR-EEVRQARRSGQDRSETPGVVLEDVAARDEADSKVTSFLSAADGVTTLDN 213 (712)
T ss_pred cEEEecCccceE----EecCCCeEEEEECC-HHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcccccCCCCCCCCeEEEEC
Confidence 789987543221 12344577999997 5777666544433 445555444432221 11222334 44444 5
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 023332 255 AEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 255 ~~~~~e~~~~~i~~~i~~~~ 274 (284)
+..+++++++.|.++++...
T Consensus 214 s~~~~~~v~~~i~~~i~~~~ 233 (712)
T PRK09518 214 SDLDFDETLDLLIGLVEDAI 233 (712)
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 55699999999999998753
No 164
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.65 E-value=5.6e-07 Score=81.33 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=43.7
Q ss_pred HHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHH
Q 023332 176 YMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIAT 237 (284)
Q Consensus 176 ~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~ 237 (284)
.+..+..+|+|..+ ..+..+++.++....+||+++| .+++.+|..+|...-.+++...+..
T Consensus 123 ~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~p-le~~l~RN~~R~~~v~devie~m~~ 189 (340)
T TIGR03575 123 AVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCP-VESCLLRNKQRPVPLPDETIQLMGR 189 (340)
T ss_pred HHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCC-HHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 34556678999877 3445666777788899999998 6999999999975434444444443
No 165
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=2.5e-08 Score=84.59 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
....+++.+.+|++++|+||||||||||+++|.....
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~ 56 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK 56 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3445555678899999999999999999999987653
No 166
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.60 E-value=1.6e-08 Score=85.32 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+++|++++|+|+||||||||+|+|.+..+
T Consensus 23 Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 23 VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred EeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 333478899999999999999999999998765
No 167
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.60 E-value=2.1e-07 Score=78.19 Aligned_cols=122 Identities=21% Similarity=0.359 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc--CCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR--DSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~--~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
..|.++++.|++||||||+++.+...+ +....+..+..|..... ...+... .......... ...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~-----------~~~~~~~-~~~~~~~~~~--~~a 78 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPD-----------YDELLKA-DPDEASELTQ--KEA 78 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTT-----------HHHHHHH-HCCCTHHHHH--HHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccc-----------hhhhhhh-hhhhhHHHHH--HHH
Confidence 568999999999999999999997765 33333333322221100 0010000 0000000000 000
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHH---HHH---HHHHHhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQ---GAQ---TLRRVLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~---~~~---~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
.......++.+++.+.++|+|+++. ... +..+..|....++++.+| .+.-..|..+|.
T Consensus 79 ~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~-~e~s~~rv~~R~ 142 (199)
T PF06414_consen 79 SRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP-PELSIERVRQRY 142 (199)
T ss_dssp HHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC-HHHHHHHHHHHH
Confidence 0011235667889999999998772 222 222334777888888887 588888888773
No 168
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.59 E-value=8.9e-09 Score=94.85 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=63.4
Q ss_pred HHHhhhHHhhc--ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCC--CCCceeEec
Q 023332 66 ELLRSLEASLG--HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGE--ENGKDYYFV 141 (284)
Q Consensus 66 ~~~~~~~~~~~--~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~~ 141 (284)
..+.++.+.|+ .....++++.+.+|+.++++||||+||||++|.|-+.++ ...|. ++|.|+.-+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd------------v~sGsI~iDgqdIrnv 605 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD------------VNSGSITIDGQDIRNV 605 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh------------ccCceEEEcCchHHHH
Confidence 33445555552 455566667788899999999999999999999999876 23332 367777666
Q ss_pred CHHHHHHh---hcccchhhhhhhcccc-cCCC
Q 023332 142 SKEEFLTM---IDKNELLEYALVYGDY-KGIP 169 (284)
Q Consensus 142 ~~~~~~~~---~~~~~~~~~~~~~~~~-yg~~ 169 (284)
+...+... +.++..+++.++..|+ |+.+
T Consensus 606 t~~SLRs~IGVVPQDtvLFNdTI~yNIryak~ 637 (790)
T KOG0056|consen 606 TQSSLRSSIGVVPQDTVLFNDTILYNIRYAKP 637 (790)
T ss_pred HHHHHHHhcCcccCcceeecceeeeheeecCC
Confidence 65555543 3466777777766663 6654
No 169
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.59 E-value=1.3e-06 Score=76.31 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=50.6
Q ss_pred HHHHHhCCCeEEEEEecCCHHHHHHHHHhh-ccCC---HHHHHHHHHHHHHHhhc-cCCccEEEECCCCCHHHHHHHHHH
Q 023332 194 TLRRVLGDSAVFVFLMAESETALVERLVER-KTES---REELLVRIATAREEIKH-VKNFDYVVVNAEGKLDVAVKLVES 268 (284)
Q Consensus 194 ~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R-~~~~---~~~i~~rl~~~~~e~~~-~~~~D~vivn~~~~~e~~~~~i~~ 268 (284)
.+.+. |....+||++|++ ++|.+|-.+- .... ...+.+-++..++.++. ...+|+||..++.++.++.++|.+
T Consensus 75 ~l~~~-~~~~~ilFLdA~d-~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i~~ 152 (284)
T PF03668_consen 75 ELRKK-GIDVRILFLDASD-EVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVIDTSNLSVHQLRERIRE 152 (284)
T ss_pred HHHhc-CCceEEEEEECCh-HHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEEECCCCCHHHHHHHHHH
Confidence 33433 6889999999975 9999997543 2111 01122224444444433 357899988888899999998888
Q ss_pred HHHHH
Q 023332 269 IIDAE 273 (284)
Q Consensus 269 ~i~~~ 273 (284)
.+...
T Consensus 153 ~~~~~ 157 (284)
T PF03668_consen 153 RFGGD 157 (284)
T ss_pred HhccC
Confidence 87643
No 170
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.58 E-value=6.7e-07 Score=88.28 Aligned_cols=89 Identities=18% Similarity=0.223 Sum_probs=50.3
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHH-HHh---hcc-CCHHHHHHHHHHHHH-Hh----hcc-CC
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVER-LVE---RKT-ESREELLVRIATARE-EI----KHV-KN 247 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~R-l~~---R~~-~~~~~i~~rl~~~~~-e~----~~~-~~ 247 (284)
....+|+|+.--+.. .++...+.||++++. +++.+| ..+ ++. .+.+++.+.+.+-.. +. ... ..
T Consensus 555 ~~~~~v~eGRdigtv----v~p~a~~kifl~a~~-~~Ra~Rr~~~~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~ 629 (661)
T PRK11860 555 RLPGLVADGRDMGTV----IFPDAALKVFLTASA-EARAERRYKQLISKGISANIADLLADLEARDARDTQRSVAPLKPA 629 (661)
T ss_pred hCCCEEEECCCCccE----ECCCCCeEEEEECCh-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccC
Confidence 345789997543321 223345789999975 666555 332 221 244555554443222 11 111 12
Q ss_pred ccEEEECC-CCCHHHHHHHHHHHHHH
Q 023332 248 FDYVVVNA-EGKLDVAVKLVESIIDA 272 (284)
Q Consensus 248 ~D~vivn~-~~~~e~~~~~i~~~i~~ 272 (284)
.|.+++|+ ..++++++++|.+++++
T Consensus 630 ~da~~idts~~~~~~v~~~i~~~i~~ 655 (661)
T PRK11860 630 QDALLLDNSDLTIEQAVAQVLDWWQE 655 (661)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHh
Confidence 35555555 45999999999999974
No 171
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.57 E-value=7.4e-08 Score=78.82 Aligned_cols=35 Identities=31% Similarity=0.543 Sum_probs=28.6
Q ss_pred HhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 73 ASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 73 ~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.++++. +++|+++.|+|||||||||++++|...
T Consensus 17 aL~~vs~~------i~~Gef~fl~GpSGAGKSTllkLi~~~ 51 (223)
T COG2884 17 ALRDVSFH------IPKGEFVFLTGPSGAGKSTLLKLIYGE 51 (223)
T ss_pred hhhCceEe------ecCceEEEEECCCCCCHHHHHHHHHhh
Confidence 44455554 678999999999999999999999654
No 172
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.57 E-value=6.4e-08 Score=93.23 Aligned_cols=73 Identities=23% Similarity=0.230 Sum_probs=52.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...+.++.+++|+.++|+|+||||||||++.|.+.++ +..|++ +|.++..+ ...+... +.+.
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~ 416 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD------------PLQGEVTLDGVSVSSL-QDELRRRISVFAQD 416 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEEhhhH-HHHHHhheEEEccC
Confidence 4455566788999999999999999999999999876 455543 56555545 4544433 3466
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
.+++..++.+|
T Consensus 417 ~~lF~~TI~eN 427 (529)
T TIGR02868 417 AHLFDTTVRDN 427 (529)
T ss_pred cccccccHHHH
Confidence 66777776666
No 173
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=8.6e-07 Score=72.06 Aligned_cols=179 Identities=17% Similarity=0.110 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccc-cCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSR-PMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.+|.+|++-|.-+|||||.+..|.+.+-..... ....+ +.+...++. - + ...+....+-....-++-+..|.|
T Consensus 3 ~rg~liV~eGlDrsgKstQ~~~l~~~l~~~~~~-~~l~~FP~Rst~iGk-~---i-~~YL~k~~dl~d~~iHLlFSAnRw 76 (208)
T KOG3327|consen 3 IRGALIVLEGLDRSGKSTQCGKLVESLIPGLDP-AELLRFPERSTSIGK-L---I-DGYLRKKSDLPDHTIHLLFSANRW 76 (208)
T ss_pred CCccEEeeeccccCCceeehhHHHHHHHhccCh-HHhhhcchhcccccH-H---H-HHHHHhccCCcHHHHHHHhccchh
Confidence 568999999999999999999997654211000 00000 011111111 0 0 000110111111111222334444
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH-H-HHHHHH------------HHhCCCeEEEEEecCCHHHHHHHHHhhccCC--HHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI-Q-GAQTLR------------RVLGDSAVFVFLMAESETALVERLVERKTES--REE 230 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~-~-~~~~l~------------~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~--~~~ 230 (284)
.. ...|++-+..|..+|+|-.. . .+..++ .-+..++.++|++.++ +. ..|...++.+. ..+
T Consensus 77 e~-~~~i~e~l~kg~~~ivDRY~~SGvAyS~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p-~~-~a~rggfG~Erye~v~ 153 (208)
T KOG3327|consen 77 EH-VSLIKEKLAKGTTLIVDRYSFSGVAYSAAKGLDLDWCKQPDVGLPKPDLVLFLDVSP-ED-AARRGGFGEERYETVA 153 (208)
T ss_pred hH-HHHHHHHHhcCCeEEEecceecchhhhhhcCCCcchhhCCccCCCCCCeEEEEeCCH-HH-HHHhcCcchhHHHHHH
Confidence 32 23677788999999999432 0 111111 1123578899999984 55 34444444322 233
Q ss_pred HHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 231 LLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 231 i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+.++....+..+.......+.++|++.++|++.++|..++++...
T Consensus 154 fqekv~~~~q~l~r~e~~~~~~vDAs~sve~V~~~V~~i~e~~~~ 198 (208)
T KOG3327|consen 154 FQEKVLVFFQKLLRKEDLNWHVVDASKSVEKVHQQVRSLVENVLS 198 (208)
T ss_pred HHHHHHHHHHHHHhccCCCeEEEecCccHHHHHHHHHHHHHHhcc
Confidence 455555555544444555678889999999999999998887644
No 174
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=7.5e-09 Score=87.74 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=42.6
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..+..+.|+.+.++.++++. +.+|++++|+|||||||||+.+.|.+.+.
T Consensus 5 L~v~~l~k~FGGl~Al~~Vsl~------v~~Gei~~LIGPNGAGKTTlfNlitG~~~ 55 (250)
T COG0411 5 LEVRGLSKRFGGLTAVNDVSLE------VRPGEIVGLIGPNGAGKTTLFNLITGFYK 55 (250)
T ss_pred eeeccceeecCCEEEEeceeEE------EcCCeEEEEECCCCCCceeeeeeeccccc
Confidence 4556667777877777777776 66799999999999999999999999875
No 175
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.56 E-value=3.1e-08 Score=83.41 Aligned_cols=50 Identities=18% Similarity=0.248 Sum_probs=37.6
Q ss_pred hhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 60 AAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.++....|+...++.++++. +..|++++|+|+||+||||+++.|++..+
T Consensus 5 ~v~~l~~~YG~~~~L~gvsl~------v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 5 EVENLSAGYGKIQALRGVSLE------VERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred eEEeEeecccceeEEeeeeeE------EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334444445555555555554 77899999999999999999999999876
No 176
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=1.6e-08 Score=94.37 Aligned_cols=102 Identities=20% Similarity=0.196 Sum_probs=70.3
Q ss_pred HHHhhhHHhhc--ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCH
Q 023332 66 ELLRSLEASLG--HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSK 143 (284)
Q Consensus 66 ~~~~~~~~~~~--~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 143 (284)
..+.++..+|+ ..+..+.++++++|+-++|+|+|||||||++|+|-++++..+.+. ++|.++..++.
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~-----------IdG~dik~~~~ 420 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSIL-----------IDGQDIKEVSL 420 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEE-----------ECCeeHhhhCh
Confidence 44556666664 226667777889999999999999999999999999876333322 25666666666
Q ss_pred HHHHHhh---cccchhhhhhhccc-ccCCCHHHHHHHHH
Q 023332 144 EEFLTMI---DKNELLEYALVYGD-YKGIPKKQIREYMA 178 (284)
Q Consensus 144 ~~~~~~~---~~~~~~~~~~~~~~-~yg~~~~~i~~~l~ 178 (284)
+.+...+ .|+..+++.++..| .||.....-+++.+
T Consensus 421 ~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e 459 (591)
T KOG0057|consen 421 ESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVE 459 (591)
T ss_pred HHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHH
Confidence 6666553 46677777776666 47776544444443
No 177
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.56 E-value=5.4e-08 Score=81.06 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=35.3
Q ss_pred hhHHhhc-ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 70 SLEASLG-HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 70 ~~~~~~~-~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..||+ ......++|.++++.+++|+|||||||||++|.|-+..+
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence 3444553 334455666788999999999999999999999987654
No 178
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.55 E-value=1.6e-07 Score=83.09 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+.+|+|.|+|||||||+++.|.+.+
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999997654
No 179
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.54 E-value=3.9e-07 Score=80.49 Aligned_cols=88 Identities=18% Similarity=0.219 Sum_probs=63.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC---------ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhc
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDS---------LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
+|+|+||+|||||+|+..|++.++. .+...+.++++|..++..+..+++++.-+....+..
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v---------- 70 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSA---------- 70 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcH----------
Confidence 4899999999999999999988753 333447788888888888999988764433322211
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
++.++...+.++++.+.|+.+|+.|..
T Consensus 71 ~~f~~~a~~~i~~~~~~g~~pi~vGGT 97 (287)
T TIGR00174 71 ADFQTLALNAIADITARGKIPLLVGGT 97 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 122344566788889999988887655
No 180
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.54 E-value=1.2e-07 Score=92.20 Aligned_cols=99 Identities=24% Similarity=0.261 Sum_probs=69.3
Q ss_pred HhhhHHhhc--ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCH
Q 023332 68 LRSLEASLG--HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSK 143 (284)
Q Consensus 68 ~~~~~~~~~--~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~ 143 (284)
+.++.+.|+ .....++++..++|+.++|+|+|||||||+++.|.+.++ +..|++ +|.++..++.
T Consensus 331 f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~dI~~i~~ 398 (567)
T COG1132 331 FENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGIDIRDISL 398 (567)
T ss_pred EEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC------------CCCCeEEECCEehhhcCH
Confidence 344444443 234455666688999999999999999999999999987 444543 6777777777
Q ss_pred HHHHHhh---cccchhhhhhhccc-ccCC---CHHHHHHHHH
Q 023332 144 EEFLTMI---DKNELLEYALVYGD-YKGI---PKKQIREYMA 178 (284)
Q Consensus 144 ~~~~~~~---~~~~~~~~~~~~~~-~yg~---~~~~i~~~l~ 178 (284)
..+.+.+ .++.+++..++.+| .||. ..+++.++++
T Consensus 399 ~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k 440 (567)
T COG1132 399 DSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALK 440 (567)
T ss_pred HHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHH
Confidence 7666554 46777777888888 4674 3355555444
No 181
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.52 E-value=4e-08 Score=88.17 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=36.9
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..+..+.|+...++.+++ +.+.+|++++|+||||||||||+++|++.+.
T Consensus 8 i~i~~l~k~~~~~~~l~~vs------l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 8 IDFRNVEKRYGDKLVVDGLS------FHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred EEEEeEEEEECCeEEEecce------EEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45555555554433333444 4477899999999999999999999998853
No 182
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.51 E-value=4.5e-08 Score=87.21 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|||||||||++++|++...
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 33444477899999999999999999999998864
No 183
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.49 E-value=3.4e-06 Score=78.18 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.|+|+|++|||||||++.|+..++
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g 244 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFN 244 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999875
No 184
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.5e-07 Score=87.28 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=62.9
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hcc
Q 023332 78 AFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDK 152 (284)
Q Consensus 78 ~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~ 152 (284)
...++.++..++|+.++|+|+|||||||+++.|++.++ +..|++ +|.+...++.+.+.+. +.+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~------------~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q 402 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA------------PTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCccccccCHHHHHhHeeeeCC
Confidence 35566667788999999999999999999999999876 444543 4555555666666544 456
Q ss_pred cchhhhhhhcccc-cC---CCHHHHHHHHH
Q 023332 153 NELLEYALVYGDY-KG---IPKKQIREYMA 178 (284)
Q Consensus 153 ~~~~~~~~~~~~~-yg---~~~~~i~~~l~ 178 (284)
..+++..++.+|+ .+ ...+++.++++
T Consensus 403 ~p~lf~gTireNi~l~~~~~s~e~i~~al~ 432 (559)
T COG4988 403 NPYLFAGTIRENILLARPDASDEEIIAALD 432 (559)
T ss_pred CCccccccHHHHhhccCCcCCHHHHHHHHH
Confidence 7777777777773 33 33566666554
No 185
>PRK06761 hypothetical protein; Provisional
Probab=98.48 E-value=1.3e-05 Score=70.73 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDS 116 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~ 116 (284)
+++|+|.|++||||||+++.|++.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 578999999999999999999988753
No 186
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.48 E-value=2.1e-07 Score=85.63 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++.+.+|++++|+||||||||||+++|++.+.
T Consensus 32 ~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 32 NLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3344567899999999999999999999999864
No 187
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=6.2e-07 Score=72.53 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=39.7
Q ss_pred CccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 56 HTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.|.++..+..+.|+.-....+++|. ..+|++++|+|-||||||||+++|+.++.
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~------l~PGeVLgiVGESGSGKtTLL~~is~rl~ 57 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFD------LYPGEVLGIVGESGSGKTTLLKCISGRLT 57 (258)
T ss_pred CcceeehhhhhhhCCCcCcccccee------ecCCcEEEEEecCCCcHHhHHHHHhcccC
Confidence 3445556556655555555555554 56699999999999999999999988764
No 188
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.48 E-value=4.8e-07 Score=69.83 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=30.7
Q ss_pred HHcCCcEEEEecHHHHHHHHHHhCCCeEE-EEEecCCHHHHHHHHHhhccCCHHHH
Q 023332 177 MAKGYDIILRVDIQGAQTLRRVLGDSAVF-VFLMAESETALVERLVERKTESREEL 231 (284)
Q Consensus 177 l~~g~~vvld~~~~~~~~l~~~~g~~~~~-I~l~~p~~~~l~~Rl~~R~~~~~~~i 231 (284)
...+..+|+|......... ...... |++++| .+++.+|+.+|........
T Consensus 70 ~~~~~~~iid~~~~~~~~~----~~~~~~~i~L~~~-~e~~~~R~~~R~~~~~~~~ 120 (129)
T PF13238_consen 70 MNKGRNIIIDGILSNLELE----RLFDIKFIFLDCS-PEELRKRLKKRGRKEEKKS 120 (129)
T ss_dssp HTTTSCEEEEESSEEECET----TEEEESSEEEE---HHHHHHHHHCTTTSCHHHH
T ss_pred cccCCcEEEecccchhccc----ccceeeEEEEECC-HHHHHHHHHhCCCCCCCch
Confidence 4557788999766322100 011222 999997 5999999999988765433
No 189
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.48 E-value=1.7e-07 Score=93.01 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=60.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++++++|+.++|+|+||||||||++.|++.++ |..|.+ +|.++..++...+.+. +.++
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET------------PESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC------------CCCCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 3445556678899999999999999999999999886 455544 6666666666666544 3355
Q ss_pred chhhhhhhcccc-cC--CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG--IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg--~~~~~i~~~l~ 178 (284)
.+++..++.+|+ ++ ...+++.++++
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~e~i~~al~ 563 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTLDEAWEAAR 563 (686)
T ss_pred CccCcccHHHHHhcCCCCCHHHHHHHHH
Confidence 566666666663 33 34455555544
No 190
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.48 E-value=1.3e-07 Score=87.69 Aligned_cols=55 Identities=24% Similarity=0.225 Sum_probs=42.1
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM 149 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~ 149 (284)
+++...+|..++|+||||||||||+|.|.+.++ +..|.+ ||-+++-++++++.+.
T Consensus 355 isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~------------p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 355 ISFALQAGEALGIIGPSGSGKSTLARLLVGIWP------------PTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred ceeEecCCceEEEECCCCccHHHHHHHHHcccc------------cCCCcEEecchhhhcCCHHHhccc
Confidence 333467799999999999999999999999876 444433 6667776777777654
No 191
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.46 E-value=1.5e-07 Score=95.55 Aligned_cols=88 Identities=23% Similarity=0.314 Sum_probs=64.7
Q ss_pred cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hcc
Q 023332 78 AFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDK 152 (284)
Q Consensus 78 ~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~ 152 (284)
....+.++.++.|+.++|+|+|||||||+.+.|.+.++ |..|++ +|.++..++...+... +.+
T Consensus 367 ~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd------------P~~G~V~idG~di~~~~~~~lr~~iglV~Q 434 (1228)
T KOG0055|consen 367 KILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQ 434 (1228)
T ss_pred hhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC------------CCCceEEEcCccchhcchHHHHhhcCeeee
Confidence 34445556688999999999999999999999999987 666654 6777766665555443 456
Q ss_pred cchhhhhhhccc-ccCCC---HHHHHHHH
Q 023332 153 NELLEYALVYGD-YKGIP---KKQIREYM 177 (284)
Q Consensus 153 ~~~~~~~~~~~~-~yg~~---~~~i~~~l 177 (284)
..+++..++.+| .||.+ .++++++.
T Consensus 435 ePvlF~~tI~eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred chhhhcccHHHHHhcCCCcccHHHHHHHH
Confidence 667888888888 48874 34555544
No 192
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.44 E-value=8e-08 Score=81.55 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=42.0
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+..++.|++..++.++++. +++|++++++|+||+||||..|+|.+.+.
T Consensus 3 L~ie~vtK~Fg~k~av~~isf~------v~~G~i~GllG~NGAGKTTtfRmILglle 53 (300)
T COG4152 3 LEIEGVTKSFGDKKAVDNISFE------VPPGEIFGLLGPNGAGKTTTFRMILGLLE 53 (300)
T ss_pred eEEecchhccCceeeecceeee------ecCCeEEEeecCCCCCccchHHHHhccCC
Confidence 3455666777777777777776 67799999999999999999999999875
No 193
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.44 E-value=9.2e-08 Score=89.64 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=43.5
Q ss_pred cchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 58 QTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++..+..+.|+.+.++.++++. +.+|++.+|+|-||||||||++.|++.++
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~------v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLT------VRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred eeeeecceEEcCCceeeccceeE------EeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence 45566677778888777777776 56799999999999999999999999875
No 194
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.44 E-value=3.5e-07 Score=93.00 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=65.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...+.++.++.|+.++|+|||||||||+..+|.+.|+ |..|.+ ||.++..++...+... +.+.
T Consensus 1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd------------p~~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD------------PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC------------CCCCeEEECCcccccCCHHHHHHhcceeccC
Confidence 3444555678899999999999999999999999987 455543 6777777776665543 5677
Q ss_pred chhhhhhhccc-ccCC---CHHHHHHHHH
Q 023332 154 ELLEYALVYGD-YKGI---PKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~-~yg~---~~~~i~~~l~ 178 (284)
..+++.++++| .||. +.+++.++++
T Consensus 1073 P~LF~~TIrENI~YG~~~vs~~eIi~Aak 1101 (1228)
T KOG0055|consen 1073 PVLFNGTIRENIAYGSEEVSEEEIIEAAK 1101 (1228)
T ss_pred chhhcccHHHHHhccCCCCCHHHHHHHHH
Confidence 88888888888 4883 4455555444
No 195
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.44 E-value=8.2e-08 Score=87.30 Aligned_cols=61 Identities=13% Similarity=0.175 Sum_probs=42.0
Q ss_pred CCCccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 54 MNHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
|....++..+..+.|+...++.++++ .+.+|++++|+||||||||||+++|++.+. ..+.+
T Consensus 37 ~~~~~i~i~nl~k~y~~~~~l~~is~------~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i 98 (340)
T PRK13536 37 MSTVAIDLAGVSKSYGDKAVVNGLSF------TVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98 (340)
T ss_pred CCceeEEEEEEEEEECCEEEEeeeEE------EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE
Confidence 33344566665555554333334444 467799999999999999999999999864 33433
No 196
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.44 E-value=2.6e-07 Score=92.06 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=58.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.++|+|+|||||||+++.|.+.++ +..|.+ +|.++...+...+.+. +.++
T Consensus 496 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 563 (711)
T TIGR00958 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ------------PTGGQVLLDGVPLVQYDHHYLHRQVALVGQE 563 (711)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC------------CCCCEEEECCEEHHhcCHHHHHhhceEEecC
Confidence 4455566788999999999999999999999999886 444543 5555544444444433 3455
Q ss_pred chhhhhhhcccc-cCC---CHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KGI---PKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg~---~~~~i~~~l~ 178 (284)
.+++..++.+|+ |+. ..+++.++++
T Consensus 564 ~~lF~gTIreNI~~g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 564 PVLFSGSVRENIAYGLTDTPDEEIMAAAK 592 (711)
T ss_pred ccccccCHHHHHhcCCCCCCHHHHHHHHH
Confidence 666666666663 442 3445544443
No 197
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.43 E-value=3.3e-07 Score=89.30 Aligned_cols=88 Identities=20% Similarity=0.210 Sum_probs=57.5
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
....+++.+++|+.++|+|+||||||||++.|++.++ |..|++ +|.++..++.+.+... +.++
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~ 425 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLDGHDLRDYTLASLRNQVALVSQN 425 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC------------CCCceEEECCEEhhhcCHHHHHhhceEEccC
Confidence 4455566688999999999999999999999999876 444443 5555554555444433 3455
Q ss_pred chhhhhhhcccc-cC----CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG----IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg----~~~~~i~~~l~ 178 (284)
.+++..++.+|+ ++ ...++++++++
T Consensus 426 ~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~ 455 (582)
T PRK11176 426 VHLFNDTIANNIAYARTEQYSREQIEEAAR 455 (582)
T ss_pred ceeecchHHHHHhcCCCCCCCHHHHHHHHH
Confidence 566666666663 33 23445554443
No 198
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.43 E-value=2.5e-07 Score=90.30 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=59.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHh---hcccch
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM---IDKNEL 155 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (284)
...+.++.+++|+.++|+|+||||||||++.|.+.++..+.+. .+|.++..++.+.+.+. +.+..+
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~-----------i~g~~i~~~~~~~lr~~i~~v~Q~~~ 433 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLK-----------INGIELRELDPESWRKHLSWVGQNPQ 433 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEE-----------ECCEecccCCHHHHHhheEEecCCCc
Confidence 4455666788999999999999999999999998875322221 14555555565555543 346667
Q ss_pred hhhhhhcccc-cC---CCHHHHHHHHH
Q 023332 156 LEYALVYGDY-KG---IPKKQIREYMA 178 (284)
Q Consensus 156 ~~~~~~~~~~-yg---~~~~~i~~~l~ 178 (284)
++..++.+|+ |+ ...+++.++++
T Consensus 434 LF~~TI~eNI~~g~~~~~~eei~~al~ 460 (588)
T PRK11174 434 LPHGTLRDNVLLGNPDASDEQLQQALE 460 (588)
T ss_pred CCCcCHHHHhhcCCCCCCHHHHHHHHH
Confidence 7777777773 55 24455555544
No 199
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.43 E-value=7.9e-06 Score=70.55 Aligned_cols=28 Identities=39% Similarity=0.560 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..-++|++-|+.|+|||+|++.|++.++
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lg 96 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLG 96 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhC
Confidence 4468999999999999999999999886
No 200
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.42 E-value=2.1e-07 Score=79.12 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=32.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++++++.+|+.++|+|.||||||||++.|++.++
T Consensus 42 aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~ 78 (249)
T COG1134 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK 78 (249)
T ss_pred EecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence 3455666688999999999999999999999999875
No 201
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=9.4e-07 Score=80.89 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++...
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 3444567899999999999999999999999864
No 202
>PRK15453 phosphoribulokinase; Provisional
Probab=98.42 E-value=1.6e-06 Score=75.86 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.+|+|+|.|||||||+++.|++.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987653
No 203
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.41 E-value=3.6e-07 Score=76.13 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=30.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+....+++...|++.+|+||||+|||||++.|.+.+.
T Consensus 16 ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 3344444567799999999999999999999988764
No 204
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.40 E-value=3.5e-06 Score=80.15 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 023332 92 IIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.|+|+|++||||||+++.|++.++
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg 25 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD 25 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998775
No 205
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.40 E-value=3.4e-07 Score=91.30 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=58.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.++|+|+||||||||++.|++.++ |..|.+ +|.++..++...+.+. +.+.
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 561 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ------------PWSGEILFDGIPREEIPREVLANSVAMVDQD 561 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEeHHHCCHHHHHhheeEEecC
Confidence 4445566688999999999999999999999999886 444543 5555555555555444 3355
Q ss_pred chhhhhhhcccc-cC---CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG---IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg---~~~~~i~~~l~ 178 (284)
.+++..++.+|+ ++ ...+.+.++++
T Consensus 562 ~~lf~gTi~eNi~l~~~~~~~~~i~~al~ 590 (710)
T TIGR03796 562 IFLFEGTVRDNLTLWDPTIPDADLVRACK 590 (710)
T ss_pred ChhhhccHHHHhhCCCCCCCHHHHHHHHH
Confidence 666666776664 33 23444444433
No 206
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.39 E-value=1.2e-06 Score=81.12 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=55.7
Q ss_pred hhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCce
Q 023332 60 AAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKD 137 (284)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~ 137 (284)
+..+.++.|+.+.+..++++. +.+|++.+|+|-||+|||||+++|.+.+. |..|++ +|..
T Consensus 6 ~~~~itK~f~~~~And~V~l~------v~~GeIHaLLGENGAGKSTLm~iL~G~~~------------P~~GeI~v~G~~ 67 (501)
T COG3845 6 EMRGITKRFPGVVANDDVSLS------VKKGEIHALLGENGAGKSTLMKILFGLYQ------------PDSGEIRVDGKE 67 (501)
T ss_pred EEeccEEEcCCEEecCceeee------ecCCcEEEEeccCCCCHHHHHHHHhCccc------------CCcceEEECCEE
Confidence 334445555555555555554 67799999999999999999999998875 555654 5666
Q ss_pred eEecCHHHHHHh-----hcccchhhhhhhccc
Q 023332 138 YYFVSKEEFLTM-----IDKNELLEYALVYGD 164 (284)
Q Consensus 138 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 164 (284)
..+-++.+-.+. .+...+.+..++.+|
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~EN 99 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAEN 99 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhh
Confidence 666554433221 123344455555554
No 207
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.39 E-value=5.1e-06 Score=67.68 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=47.6
Q ss_pred ccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc-cCCceeEee
Q 023332 57 TQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES-RDSLRFVVT 122 (284)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~-~~~~~~~~~ 122 (284)
+.++.++..+.|+..+.+.++++. ..+|.+|.|+|.|||||||++|++--. .|..+.+..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~------A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v 65 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQ------ANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRV 65 (256)
T ss_pred cceehhHHHhhcccchhhcceeee------cCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEE
Confidence 456788889999999998888887 466999999999999999999999432 344444433
No 208
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.38 E-value=3.8e-07 Score=90.94 Aligned_cols=75 Identities=20% Similarity=0.164 Sum_probs=53.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.++|+|+||||||||++.|++.++ |..|.+ +|.++..++...+... +.++
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 556 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ------------ARSGEILLNGFSLKDIDRHTLRQFINYLPQE 556 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC------------CCCcEEEECCEEHHHcCHHHHHHheEEEecC
Confidence 3445566688999999999999999999999999876 445543 5655555555555443 3456
Q ss_pred chhhhhhhcccc
Q 023332 154 ELLEYALVYGDY 165 (284)
Q Consensus 154 ~~~~~~~~~~~~ 165 (284)
.+++..++.+|+
T Consensus 557 ~~lf~gTI~eNi 568 (708)
T TIGR01193 557 PYIFSGSILENL 568 (708)
T ss_pred ceehhHHHHHHH
Confidence 666666766663
No 209
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.38 E-value=1.1e-07 Score=82.07 Aligned_cols=43 Identities=21% Similarity=0.213 Sum_probs=33.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
...++++.+.+|.+++|+||||||||||++.+.+.+. ..+.+.
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~ 62 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIK 62 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEE
Confidence 4455555678899999999999999999999999653 444443
No 210
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.38 E-value=2e-06 Score=78.56 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++...
T Consensus 24 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 24 NLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 3444567799999999999999999999999864
No 211
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.38 E-value=2.1e-06 Score=78.48 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
+++.+..|++++|+||||||||||+++|++... ..+.+.
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE
Confidence 344467799999999999999999999999864 334443
No 212
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.37 E-value=3.7e-07 Score=75.26 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++..+++|.+..++||||+|||||+.++++.++
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~ 52 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK 52 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhcc
Confidence 33444578899999999999999999999998875
No 213
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.37 E-value=4.7e-07 Score=90.06 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=57.2
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
.....++.+++|+.++|+|+||||||||++.|++.++ +..|.+ +|.++..++...+... +.+.
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~------------p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ------------PTEGSVLLDGVDIRQIDPADLRRNIGYVPQD 547 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEEhhhCCHHHHHhccEEECCC
Confidence 3445556678899999999999999999999999886 444543 5555555555554443 3355
Q ss_pred chhhhhhhcccc-cC---CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG---IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg---~~~~~i~~~l~ 178 (284)
.+++..++.+|+ ++ ...+++.++++
T Consensus 548 ~~lf~~TI~eNi~~~~~~~~~~~i~~a~~ 576 (694)
T TIGR03375 548 PRLFYGTLRDNIALGAPYADDEEILRAAE 576 (694)
T ss_pred hhhhhhhHHHHHhCCCCCCCHHHHHHHHH
Confidence 556666666663 33 23444444433
No 214
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.37 E-value=8.8e-06 Score=64.83 Aligned_cols=139 Identities=17% Similarity=0.253 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHH-HhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccch----hhhhhhccc
Q 023332 90 PLIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNEL----LEYALVYGD 164 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 164 (284)
+.+.++-|||||||||+-..+ ...++. +.+++.+++...+....- ++-.+
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~---------------------~~~VN~D~iA~~i~p~~p~~~~i~A~r---- 56 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPG---------------------IVFVNADEIAAQISPDNPTSAAIQAAR---- 56 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCC---------------------eEEECHHHHhhhcCCCCchHHHHHHHH----
Confidence 467888999999999986554 333332 233344444333211000 00000
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecHH-----HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cC-CHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDIQ-----GAQTLRRVLGDSAVFVFLMAESETALVERLVERK----TE-SREELLVR 234 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~~-----~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~-~~~~i~~r 234 (284)
.....+...+..|....++.++. .+..-++..|+.....|+..++.+...+|++.|- .+ .++.++.|
T Consensus 57 ---~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~R 133 (187)
T COG4185 57 ---VAIDRIARLIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRR 133 (187)
T ss_pred ---HHHHHHHHHHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 11234556788899988887662 2222233446666666777777788899998883 22 35677777
Q ss_pred HHHHHHHhhc-cCCccE-EEECCC
Q 023332 235 IATAREEIKH-VKNFDY-VVVNAE 256 (284)
Q Consensus 235 l~~~~~e~~~-~~~~D~-vivn~~ 256 (284)
..+..+.+.. ...+|. .|.|++
T Consensus 134 Y~rsle~l~~~l~l~dr~~IydNS 157 (187)
T COG4185 134 YRRSLELLAQALTLADRATIYDNS 157 (187)
T ss_pred HHHHHHHHHHHHhhcceeEEecCC
Confidence 7764443332 245663 344443
No 215
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.37 E-value=1.5e-07 Score=79.95 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=33.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeec
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTAT 124 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~ 124 (284)
.+++++.+|+.++|+|+||||||||++.|++... ..+.+..++
T Consensus 25 ~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 25 NVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred ceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 3344467899999999999999999999998753 445554444
No 216
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.36 E-value=4.4e-07 Score=88.61 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=56.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...+.++++++|+.++|+|+||||||||++.|.+.++ |..|.+ +|.++..++.+.+.+. +.+.
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~------------p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~ 423 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP------------LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD 423 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC------------CCCceEEECCEEhhhCCHHHHHhheEEEccC
Confidence 4445566688999999999999999999999999876 444433 5555555555554443 2355
Q ss_pred chhhhhhhcccc-cC--CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG--IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg--~~~~~i~~~l~ 178 (284)
.+++..++.+|+ ++ ...+++.++++
T Consensus 424 ~~lF~~Ti~~NI~~~~~~~d~~i~~a~~ 451 (592)
T PRK10790 424 PVVLADTFLANVTLGRDISEEQVWQALE 451 (592)
T ss_pred CccccchHHHHHHhCCCCCHHHHHHHHH
Confidence 555555555552 32 23445555433
No 217
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.36 E-value=2.9e-07 Score=74.98 Aligned_cols=29 Identities=34% Similarity=0.562 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++.|++++|+||||||||||.+.++++.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 56889999999999999999999999985
No 218
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.35 E-value=1.1e-06 Score=72.76 Aligned_cols=23 Identities=43% Similarity=0.735 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+|+|.|++||||||+++.|++.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998875
No 219
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.35 E-value=6.8e-07 Score=87.01 Aligned_cols=89 Identities=17% Similarity=0.175 Sum_probs=57.5
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
....+++.+++|+.++|+|+||||||||++.|++.++ +..|.+ +|.++..++...+... +.+.
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 422 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD------------PQQGEILLNGQPIADYSEAALRQAISVVSQR 422 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEEhhhCCHHHHHhheeEEccc
Confidence 3455556678899999999999999999999999876 444433 4555544555544433 3355
Q ss_pred chhhhhhhcccc-cC---CCHHHHHHHHHc
Q 023332 154 ELLEYALVYGDY-KG---IPKKQIREYMAK 179 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg---~~~~~i~~~l~~ 179 (284)
.+++..++.+|+ ++ ...+++.++++.
T Consensus 423 ~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~ 452 (574)
T PRK11160 423 VHLFSATLRDNLLLAAPNASDEALIEVLQQ 452 (574)
T ss_pred chhhcccHHHHhhcCCCccCHHHHHHHHHH
Confidence 556666666663 33 244455554443
No 220
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=1.4e-07 Score=81.28 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444577899999999999999999999998864
No 221
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.33 E-value=5.8e-07 Score=76.06 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444567899999999999999999999998764
No 222
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.32 E-value=7.7e-07 Score=85.75 Aligned_cols=74 Identities=19% Similarity=0.202 Sum_probs=49.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
.....++.+++|+.++|+|+||||||||++.|.+.++ +..|.+ +|.++..++.+.+.+. +.+.
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~------------~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~ 404 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD------------PTEGSIAVNGVPLADADADSWRDQIAWVPQH 404 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCcEEEECCEehhhCCHHHHHhheEEEcCC
Confidence 3445555678899999999999999999999999876 444443 5555555555544433 2344
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
.+++..++.+|
T Consensus 405 ~~lf~~ti~~N 415 (529)
T TIGR02857 405 PFLFAGTIAEN 415 (529)
T ss_pred CcccCcCHHHH
Confidence 45555555555
No 223
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.32 E-value=5.5e-07 Score=76.52 Aligned_cols=33 Identities=21% Similarity=0.055 Sum_probs=28.8
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 6 vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 6 TDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 345578899999999999999999999998754
No 224
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.32 E-value=4.3e-07 Score=83.20 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 11 ~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3344577899999999999999999999998864
No 225
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=1.9e-07 Score=81.42 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34445577899999999999999999999998854
No 226
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=5.6e-07 Score=75.83 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=28.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++.+..|++.+|+||||||||||+..|+++.
T Consensus 22 gvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 22 GVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334447789999999999999999999999875
No 227
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.32 E-value=4.1e-07 Score=96.66 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=66.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCc-ee--------------------------------------
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSL-RF-------------------------------------- 119 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~-------------------------------------- 119 (284)
....+++.+++|+.++|+|+|||||||++++|.+.++.. ..
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTK 1262 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 444556668899999999999999999999999987620 00
Q ss_pred ---EeeeccccCCCCCC--CCceeEecCHHHHHHh---hcccchhhhhhhcccc-cCC---CHHHHHHHHH
Q 023332 120 ---VVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKNELLEYALVYGDY-KGI---PKKQIREYMA 178 (284)
Q Consensus 120 ---~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-yg~---~~~~i~~~l~ 178 (284)
.....++.+..|.+ +|.++..++...+... +.+..+++..++.+|+ ||. ..++++++++
T Consensus 1263 ~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k 1333 (1466)
T PTZ00265 1263 EGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACK 1333 (1466)
T ss_pred ccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHH
Confidence 00111122345544 6777766776666554 4577788888888883 663 4455665554
No 228
>PLN02840 tRNA dimethylallyltransferase
Probab=98.32 E-value=9.7e-07 Score=81.57 Aligned_cols=93 Identities=16% Similarity=0.179 Sum_probs=61.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC---------ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS---------LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLE 157 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~---------~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (284)
..++.+|+|+||+|||||||+..|++.++. .+...+.++.+|...+..+..+++++.-.....+..+.|..
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~ 97 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFD 97 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHH
Confidence 355779999999999999999999988753 22334556777777777777777754333222222222222
Q ss_pred hhhhcccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 158 YALVYGDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 158 ~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
...+.++++...|+..|+.|..
T Consensus 98 ----------~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 98 ----------DARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred ----------HHHHHHHHHHhcCCCEEEEcCc
Confidence 2345677888889887777544
No 229
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.30 E-value=8e-07 Score=86.74 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++..++|+.++|+|+||||||||++.|.+.++ |..|.+ +|.++..++...+... +.+.
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~ 417 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD------------PQSGRILIDGTDIRTVTRASLRRNIAVVFQD 417 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC------------CCCCEEEECCEEhhhCCHHHHHhheEEEecC
Confidence 3445555678899999999999999999999999876 344432 4555544554444433 2344
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
.++...++.+|
T Consensus 418 ~~lf~~Ti~~N 428 (588)
T PRK13657 418 AGLFNRSIEDN 428 (588)
T ss_pred cccccccHHHH
Confidence 44555555555
No 230
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.3e-06 Score=76.65 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.++++.+++|.+++|+|.||+|||||.|++-..
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L 55 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL 55 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence 344445788999999999999999999999665
No 231
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.29 E-value=4e-06 Score=84.28 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSR 126 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r 126 (284)
.+.+|+|.||+||||||+++.|++.++..++......|
T Consensus 33 ~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yR 70 (863)
T PRK12269 33 GTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYR 70 (863)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 45799999999999999999999998744444433333
No 232
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=6.1e-06 Score=76.09 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+..|++++|+||||||||||+++|++...
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 344467799999999999999999999998864
No 233
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.28 E-value=4.2e-07 Score=77.87 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=30.0
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+||||||||||++.|++.++
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 344445578899999999999999999999998753
No 234
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.28 E-value=1.1e-06 Score=84.95 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=31.8
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++++.+++|+.++|+|+||||||||++.|++.++
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3445556678899999999999999999999999875
No 235
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=3.7e-07 Score=80.85 Aligned_cols=34 Identities=24% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 25 DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3334467899999999999999999999998864
No 236
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.26 E-value=6.1e-07 Score=74.75 Aligned_cols=34 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 10 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444577899999999999999999999998764
No 237
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.26 E-value=1.2e-06 Score=85.11 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=49.7
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hcccc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKNE 154 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ 154 (284)
....++..++|+.++|+|+||||||||++.|.+.+. +..|.+ +|.++..++...+... +.+..
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~------------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE------------PDSGQILLDGHDLADYTLASLRRQVALVSQDV 415 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC------------CCCCeEEECCEeHHhcCHHHHHhhceEEccCc
Confidence 345555678899999999999999999999999875 344433 4555444454444332 34555
Q ss_pred hhhhhhhccc
Q 023332 155 LLEYALVYGD 164 (284)
Q Consensus 155 ~~~~~~~~~~ 164 (284)
+++..++.+|
T Consensus 416 ~lf~~Ti~~N 425 (571)
T TIGR02203 416 VLFNDTIANN 425 (571)
T ss_pred ccccccHHHH
Confidence 6666666666
No 238
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.26 E-value=2.7e-07 Score=80.70 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444567899999999999999999999998864
No 239
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.26 E-value=9.1e-07 Score=72.96 Aligned_cols=30 Identities=30% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+|+||||||||+++|++.+.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 467899999999999999999999998864
No 240
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.26 E-value=9.1e-07 Score=76.18 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344455678899999999999999999999998764
No 241
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.25 E-value=1.5e-06 Score=70.97 Aligned_cols=57 Identities=16% Similarity=0.110 Sum_probs=42.0
Q ss_pred chhhhhHHHHhhhHHhhcc---cccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGH---AFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.++..+.|.....+++. .....+++....|..++++|-||||||||+++|++..+
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~ 64 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC
Confidence 4566677777665555542 22233444568899999999999999999999999876
No 242
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.24 E-value=8.3e-07 Score=76.76 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=28.2
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+.+|++++|+|.|||||||++++|.+...
T Consensus 34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 3478899999999999999999999999876
No 243
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.24 E-value=8.6e-07 Score=76.24 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999999865
No 244
>COG3911 Predicted ATPase [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=63.45 Aligned_cols=154 Identities=18% Similarity=0.237 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.++++|+|.+|+|||||++.|++. ++..+.....+-.. .....|...-+.+...|.++.....+
T Consensus 9 ~~~fIltGgpGaGKTtLL~aLa~~--Gfatvee~~r~ii~~es~~gg~~lPW~D~~afael~~~~~l------------- 73 (183)
T COG3911 9 HKRFILTGGPGAGKTTLLAALARA--GFATVEEAGRDIIALESAQGGTALPWTDPGAFAELVGLQRL------------- 73 (183)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHc--CceeeccchhhHHHHHHhcCCCcCCccChHHHHHHHHHHHH-------------
Confidence 468999999999999999999875 33333222111100 01123344445555555544211110
Q ss_pred CHHHHHHHHHcCCcEEEEecH----------------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHH--
Q 023332 169 PKKQIREYMAKGYDIILRVDI----------------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREE-- 230 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~----------------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~-- 230 (284)
.-.+....+..+++|-.. ..+..+.+..+... -||+..|. ..+-+.-..|+..-++.
T Consensus 74 ---~q~r~~~~~~~vFfDR~~~da~a~l~~lsga~la~~v~~~~~~~~Yn~-rVfl~qp~-~~iyqqde~Rk~tldeAv~ 148 (183)
T COG3911 74 ---RQTRSAAVGGRVFFDRGPPDALAYLRFLSGALLADEVATIVREGRYNP-RVFLVQPW-PFIYQQDEERKITLDEAVA 148 (183)
T ss_pred ---HHhhcccccCceeeccCcHHHHHHHHHhcccHHHHHHHHHHHhcCCCC-cEEecCCc-cccccchhhcccCHHHHHH
Confidence 111224556667777333 12222333333333 36666664 45555556665433332
Q ss_pred HHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHH
Q 023332 231 LLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVES 268 (284)
Q Consensus 231 i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~ 268 (284)
+.+.+.+++.++ .|+.+.+-- .++++=+.-+..
T Consensus 149 ~~e~lv~aYt~L----Gyelv~lp~-a~Ve~Rv~fVLt 181 (183)
T COG3911 149 FYEVLVAAYTEL----GYELVPLPP-APVEDRVRFVLT 181 (183)
T ss_pred HHHHHHHHHHhc----CceeeecCC-ccHHHHHHHHHh
Confidence 344555555443 567776654 567776666554
No 245
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.24 E-value=2.3e-06 Score=76.54 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
+++.+.+|++++|+||||||||||+++|++.++ ..+.+
T Consensus 21 is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i 59 (301)
T TIGR03522 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59 (301)
T ss_pred eEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 334467899999999999999999999998753 34433
No 246
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=8.6e-07 Score=76.55 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 344445577899999999999999999999998864
No 247
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.23 E-value=8.5e-07 Score=75.88 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344455678899999999999999999999998864
No 248
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.23 E-value=6.7e-07 Score=76.06 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 33444567899999999999999999999999864
No 249
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=7.8e-07 Score=75.43 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=30.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344455578899999999999999999999998764
No 250
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.23 E-value=8.8e-07 Score=75.02 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44445577899999999999999999999998864
No 251
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.2e-06 Score=79.13 Aligned_cols=74 Identities=19% Similarity=0.175 Sum_probs=50.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...+.++.+..|+-|+|+|+|||||||+++.|++.++ +..|++ .|.++..++.+.+.+. ..+.
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~------------~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr 420 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD------------PQQGSITLNGVEIASLDEQALRETISVLTQR 420 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC------------CCCCeeeECCcChhhCChhhHHHHHhhhccc
Confidence 4445556678899999999999999999999999886 555554 4444444444433322 3455
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
..++..++++|
T Consensus 421 ~hlF~~Tlr~N 431 (573)
T COG4987 421 VHLFSGTLRDN 431 (573)
T ss_pred hHHHHHHHHHH
Confidence 55666666666
No 252
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.22 E-value=8.5e-07 Score=75.21 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444577899999999999999999999998864
No 253
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=9.4e-07 Score=72.29 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=32.2
Q ss_pred hhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 69 RSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++...+.++++. ...|+++.|+||||||||||+|+|++...
T Consensus 13 ~e~~lf~~L~f~------l~~Ge~~~i~G~NG~GKTtLLRilaGLl~ 53 (209)
T COG4133 13 GERTLFSDLSFT------LNAGEALQITGPNGAGKTTLLRILAGLLR 53 (209)
T ss_pred CcceeecceeEE------EcCCCEEEEECCCCCcHHHHHHHHHcccC
Confidence 333444456665 45599999999999999999999999865
No 254
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.22 E-value=7.7e-07 Score=75.62 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999999864
No 255
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.22 E-value=1.5e-06 Score=71.33 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=28.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+|+||||||||++.|++.++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34467799999999999999999999998764
No 256
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.22 E-value=7.7e-07 Score=75.00 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444577899999999999999999999998864
No 257
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=7.5e-07 Score=76.75 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 258
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.22 E-value=8.1e-07 Score=75.69 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 259
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.22 E-value=8.7e-07 Score=75.14 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 44455578899999999999999999999998764
No 260
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.21 E-value=8.1e-07 Score=74.89 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444577899999999999999999999998864
No 261
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.21 E-value=8.4e-07 Score=79.47 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+||||||||||+++|++.++
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998863
No 262
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.21 E-value=9.4e-07 Score=76.44 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34445577899999999999999999999998864
No 263
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.21 E-value=1.7e-06 Score=84.15 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
....++..++|+.++|+|+||||||||++.|.+.++
T Consensus 356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 344556678899999999999999999999999875
No 264
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=3.1e-07 Score=80.31 Aligned_cols=55 Identities=24% Similarity=0.187 Sum_probs=37.3
Q ss_pred CCCccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 54 MNHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
|+.+.+...+....++... .....++.+.+|++++|+|+||||||||+++|++.+
T Consensus 8 ~~~~~l~i~~l~~~~~~~~------~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQHH------ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred cCCceEEEeeEEEEECCee------eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4444455554444333222 233344456789999999999999999999999875
No 265
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=3.7e-07 Score=78.73 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444577899999999999999999999998764
No 266
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.20 E-value=8.8e-07 Score=78.00 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=31.1
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 39 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445555678899999999999999999999999864
No 267
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.20 E-value=1.2e-06 Score=67.24 Aligned_cols=25 Identities=48% Similarity=0.760 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCC
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDS 116 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~ 116 (284)
+|+|+|++||||||+++.|++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 268
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.20 E-value=3.5e-07 Score=80.05 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34445577899999999999999999999998864
No 269
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.20 E-value=1e-06 Score=75.18 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444577899999999999999999999998864
No 270
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=6.9e-07 Score=78.65 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++.++
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344567899999999999999999999998864
No 271
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.20 E-value=1e-06 Score=75.55 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=30.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455578899999999999999999999998864
No 272
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.19 E-value=1.1e-06 Score=71.60 Aligned_cols=36 Identities=25% Similarity=0.294 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
....++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344555678899999999999999999999998864
No 273
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.19 E-value=2.6e-06 Score=82.63 Aligned_cols=36 Identities=22% Similarity=0.101 Sum_probs=31.0
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++++.+++|++++|+||||||||||++.|++.++
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344555678899999999999999999999999875
No 274
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.6e-06 Score=71.09 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 20 ~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 20 DVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3344567899999999999999999999999865
No 275
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.4e-06 Score=75.44 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444577899999999999999999999998764
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.19 E-value=1.8e-06 Score=71.29 Aligned_cols=35 Identities=29% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998764
No 277
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=9.6e-07 Score=75.28 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999998754
No 278
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.18 E-value=1.2e-06 Score=73.93 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344455578899999999999999999999998864
No 279
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.18 E-value=1.3e-06 Score=75.07 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999998764
No 280
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.18 E-value=1e-06 Score=75.52 Aligned_cols=35 Identities=26% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 27 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 27 TGVELVVKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34445577899999999999999999999999864
No 281
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.18 E-value=1.3e-06 Score=79.42 Aligned_cols=35 Identities=29% Similarity=0.333 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++...
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444577899999999999999999999998864
No 282
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.18 E-value=6.9e-06 Score=71.46 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 023332 92 IIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+|+|+|+|||||||+++.|.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999987653
No 283
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1e-06 Score=74.49 Aligned_cols=34 Identities=21% Similarity=0.222 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444567899999999999999999999998764
No 284
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.18 E-value=1.1e-06 Score=74.94 Aligned_cols=34 Identities=26% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444567899999999999999999999998864
No 285
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.18 E-value=9.8e-07 Score=77.09 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999998864
No 286
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.18 E-value=3.9e-07 Score=79.65 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999999864
No 287
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.18 E-value=6.1e-07 Score=76.27 Aligned_cols=35 Identities=17% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 33444467799999999999999999999998864
No 288
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.18 E-value=3.6e-06 Score=66.34 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+|++|-++|.|||||||++-.|.+.+
T Consensus 29 qkGcviWiTGLSgSGKStlACaL~q~L 55 (207)
T KOG0635|consen 29 QKGCVIWITGLSGSGKSTLACALSQAL 55 (207)
T ss_pred CCCcEEEEeccCCCCchhHHHHHHHHH
Confidence 559999999999999999999997654
No 289
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.18 E-value=5.9e-05 Score=64.72 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=46.2
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhhc-cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEIKH-VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..+.++|+++.+ +++.+|-.+-.+..+ ..+.+-++..++.+.. ...+|.||..++.+.-++.+.|.+.+..
T Consensus 82 ~~~~iLFLeA~~-~~Lv~RY~etRR~HPL~~~~~l~~~I~~ERelL~pLk~~A~~vIDTs~ls~~~Lr~~i~~~f~~ 157 (286)
T COG1660 82 IDPRVLFLEADD-ETLVRRYSETRRSHPLSEDGLLLEAIAKERELLAPLREIADLVIDTSELSVHELRERIRTRFLG 157 (286)
T ss_pred CCceEEEEECch-hHHHHHHhhhhhcCCCCccCcHHHHHHHHHHHHHHHHHHhhhEeecccCCHHHHHHHHHHHHcc
Confidence 358899999975 999999754322211 1133334443433333 3568899888878888888888887764
No 290
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.18 E-value=3.9e-07 Score=81.62 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=30.1
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+||||||||||+++|++.++
T Consensus 20 l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 20 VNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred EcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344445578899999999999999999999998763
No 291
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=1.1e-06 Score=72.45 Aligned_cols=35 Identities=23% Similarity=0.382 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444577899999999999999999999998765
No 292
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.18 E-value=2.5e-06 Score=83.00 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=31.1
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
....++.+++|+.++|+|+||||||||++.|++.++
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 345555678899999999999999999999999875
No 293
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.17 E-value=1e-06 Score=74.76 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 19 ~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 19 GINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344567799999999999999999999999864
No 294
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.17 E-value=1.6e-06 Score=75.00 Aligned_cols=35 Identities=34% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444567899999999999999999999998764
No 295
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.17 E-value=1.3e-06 Score=72.32 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 18 ~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 18 DVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444567899999999999999999999998864
No 296
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.16 E-value=1.4e-06 Score=73.21 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444577899999999999999999999998864
No 297
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.16 E-value=1.2e-06 Score=73.32 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344567899999999999999999999998864
No 298
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.16 E-value=3.2e-06 Score=84.11 Aligned_cols=74 Identities=23% Similarity=0.198 Sum_probs=49.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
.....++.+++|+.++|+|+||||||||++.|++.++ +..|.+ +|.++..++...+... +.+.
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~------------p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT------------PQHGQVLVDGVDLAIADPAWLRRQMGVVLQE 539 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC------------CCCceEEECCEehhhCCHHHHHHhCeEEccC
Confidence 3445555678899999999999999999999999875 344433 5555555555554443 2344
Q ss_pred chhhhhhhccc
Q 023332 154 ELLEYALVYGD 164 (284)
Q Consensus 154 ~~~~~~~~~~~ 164 (284)
.++...++.+|
T Consensus 540 ~~lf~~ti~eN 550 (694)
T TIGR01846 540 NVLFSRSIRDN 550 (694)
T ss_pred CeehhhhHHHH
Confidence 44555555555
No 299
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.16 E-value=1.6e-06 Score=75.40 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 44444577899999999999999999999998764
No 300
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=1.4e-06 Score=76.75 Aligned_cols=35 Identities=17% Similarity=0.141 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 18 KGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444567899999999999999999999998764
No 301
>PRK05439 pantothenate kinase; Provisional
Probab=98.16 E-value=3.2e-06 Score=75.54 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+.+|+|.|++||||||+++.|+..+
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 557899999999999999999998755
No 302
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=1.1e-06 Score=74.85 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998853
No 303
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.16 E-value=1.2e-06 Score=74.31 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999999864
No 304
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.16 E-value=1.1e-06 Score=81.47 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+||||||||||+++|++.++
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34444577899999999999999999999998764
No 305
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.15 E-value=2.9e-06 Score=90.87 Aligned_cols=89 Identities=13% Similarity=0.091 Sum_probs=64.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.|+|+|++|||||||++.|.+.++ +..|.+ +|.++..++...+... +.++
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~------------~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQd 1368 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE------------SAEGEIIIDGLNIAKIGLHDLRFKITIIPQD 1368 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc------------CCCCeEEECCEEccccCHHHHHhcCeEECCC
Confidence 3445556688899999999999999999999999876 455544 7778777777766654 3466
Q ss_pred chhhhhhhccccc---CCCHHHHHHHHHc
Q 023332 154 ELLEYALVYGDYK---GIPKKQIREYMAK 179 (284)
Q Consensus 154 ~~~~~~~~~~~~y---g~~~~~i~~~l~~ 179 (284)
.+++..+++.|+- ....+++.++++.
T Consensus 1369 p~LF~gTIr~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1369 PVLFSGSLRMNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred CcccCccHHHHcCcccCCCHHHHHHHHHH
Confidence 7777777777752 2455666666653
No 306
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.15 E-value=1.8e-06 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34445577899999999999999999999998864
No 307
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.15 E-value=1.5e-06 Score=74.80 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+|+||||||||+++|++.++
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44567899999999999999999999998864
No 308
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=1.9e-06 Score=74.13 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=28.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 334467799999999999999999999998864
No 309
>PLN03232 ABC transporter C family member; Provisional
Probab=98.15 E-value=2.4e-06 Score=91.34 Aligned_cols=88 Identities=13% Similarity=0.083 Sum_probs=61.9
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.++|+|++|||||||++.|.+.++ +..|.+ +|.++..++...+... +.++
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~------------p~~G~I~IdG~di~~i~~~~lR~~i~iVpQd 1318 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE------------LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQS 1318 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc------------CCCceEEECCEEhhhCCHHHHHhhcEEECCC
Confidence 4455666688999999999999999999999999876 455544 6777766666666544 3466
Q ss_pred chhhhhhhcccc-cC--CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG--IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg--~~~~~i~~~l~ 178 (284)
.+++..++++|+ ++ ...+++.++++
T Consensus 1319 p~LF~gTIr~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232 1319 PVLFSGTVRFNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred CeeeCccHHHHcCCCCCCCHHHHHHHHH
Confidence 666667777664 22 34455555554
No 310
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.15 E-value=1.9e-06 Score=75.34 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998854
No 311
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.15 E-value=1.8e-06 Score=74.50 Aligned_cols=34 Identities=26% Similarity=0.211 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3344567899999999999999999999998864
No 312
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.15 E-value=1.5e-06 Score=75.08 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 313
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.15 E-value=2e-06 Score=73.35 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 21 KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred cceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 33444577899999999999999999999998764
No 314
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.14 E-value=1.8e-06 Score=75.89 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999999864
No 315
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.14 E-value=2.9e-06 Score=82.13 Aligned_cols=36 Identities=22% Similarity=0.193 Sum_probs=30.9
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.++.+++|+.++|+|+||||||||++.|++.++
T Consensus 334 l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 334 LRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344555678899999999999999999999999875
No 316
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=1.4e-06 Score=75.34 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999998864
No 317
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=1.5e-06 Score=74.43 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+||||||||||+++|++.++
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34444577899999999999999999999998864
No 318
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.14 E-value=2.6e-06 Score=68.82 Aligned_cols=36 Identities=25% Similarity=0.255 Sum_probs=29.3
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+...+++.+..|+.++|+||||||||||+-.|++..
T Consensus 25 IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred EeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 333444446779999999999999999999999874
No 319
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.14 E-value=1.3e-06 Score=71.93 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=25.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
..++.+.+|++++|+||||||||||++++.
T Consensus 13 ~isl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 13 NLDVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 344457789999999999999999999985
No 320
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.14 E-value=1.4e-06 Score=74.61 Aligned_cols=33 Identities=30% Similarity=0.471 Sum_probs=28.7
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 18 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 18 DISLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 344456789999999999999999999999886
No 321
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.14 E-value=1.4e-06 Score=70.81 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445578899999999999999999999998864
No 322
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.14 E-value=5.5e-07 Score=78.40 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=28.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..+++.+.+|++++|+|+||||||||+++|++.
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 344445678999999999999999999999876
No 323
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.14 E-value=1.4e-06 Score=75.11 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34444577899999999999999999999998864
No 324
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.14 E-value=1.8e-06 Score=78.68 Aligned_cols=34 Identities=29% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 23 ~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 23 NVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444577899999999999999999999999864
No 325
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.14 E-value=1.4e-06 Score=71.50 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998764
No 326
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.13 E-value=1.4e-06 Score=65.38 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=24.6
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHH
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
++.+..|++++|+||||||||||+++|.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3446779999999999999999999987
No 327
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.13 E-value=1.4e-06 Score=69.40 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 3344567899999999999999999999998864
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.13 E-value=3.2e-06 Score=73.49 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+..|++++|+|+||||||||+++|++.++
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 356799999999999999999999998764
No 329
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.13 E-value=2.4e-06 Score=75.42 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998764
No 330
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.13 E-value=1.7e-06 Score=73.85 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 331
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.13 E-value=6.4e-07 Score=78.05 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4444457789999999999999999999999864
No 332
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=2.3e-06 Score=77.46 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 33444577899999999999999999999998864
No 333
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.12 E-value=1.6e-06 Score=73.72 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 23 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 23 GVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3344567799999999999999999999998864
No 334
>PLN03130 ABC transporter C family member; Provisional
Probab=98.12 E-value=3.5e-06 Score=90.58 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=62.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.|+|+|++|||||||++.|.+.++ +..|.+ +|.++..++...+... +.++
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~------------p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQd 1321 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE------------LERGRILIDGCDISKFGLMDLRKVLGIIPQA 1321 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC------------CCCceEEECCEecccCCHHHHHhccEEECCC
Confidence 4556666788999999999999999999999999876 445543 6777766666666554 3466
Q ss_pred chhhhhhhcccc-cC--CCHHHHHHHHH
Q 023332 154 ELLEYALVYGDY-KG--IPKKQIREYMA 178 (284)
Q Consensus 154 ~~~~~~~~~~~~-yg--~~~~~i~~~l~ 178 (284)
.+++..+++.|+ ++ ...+++.++++
T Consensus 1322 p~LF~GTIreNLd~~~~~tdeei~~Al~ 1349 (1622)
T PLN03130 1322 PVLFSGTVRFNLDPFNEHNDADLWESLE 1349 (1622)
T ss_pred CccccccHHHHhCcCCCCCHHHHHHHHH
Confidence 666666776663 22 24455555554
No 335
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.12 E-value=1.9e-06 Score=74.98 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455578899999999999999999999998764
No 336
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.12 E-value=2.2e-06 Score=73.68 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=28.8
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344577899999999999999999999998864
No 337
>PTZ00243 ABC transporter; Provisional
Probab=98.12 E-value=3.5e-06 Score=90.32 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=63.5
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hccc
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKN 153 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~ 153 (284)
...++++.+++|+.|+|+|++|||||||++.|.+.+. +..|.+ +|.++..++...+... +.++
T Consensus 1325 vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~------------p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd 1392 (1560)
T PTZ00243 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE------------VCGGEIRVNGREIGAYGLRELRRQFSMIPQD 1392 (1560)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC------------CCCcEEEECCEEcccCCHHHHHhcceEECCC
Confidence 4556666788999999999999999999999999876 445543 6777776666666544 3466
Q ss_pred chhhhhhhccccc---CCCHHHHHHHHHc
Q 023332 154 ELLEYALVYGDYK---GIPKKQIREYMAK 179 (284)
Q Consensus 154 ~~~~~~~~~~~~y---g~~~~~i~~~l~~ 179 (284)
.+++..++..|+- ....+++.++++.
T Consensus 1393 p~LF~gTIreNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1393 PVLFDGTVRQNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred CccccccHHHHhCcccCCCHHHHHHHHHH
Confidence 6777777777642 2345566666653
No 338
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.12 E-value=1.2e-06 Score=74.94 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=30.0
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 38 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444577899999999999999999999998754
No 339
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.12 E-value=1.8e-06 Score=72.37 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 340
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.12 E-value=2e-06 Score=74.73 Aligned_cols=35 Identities=31% Similarity=0.530 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34445578899999999999999999999998763
No 341
>PRK10908 cell division protein FtsE; Provisional
Probab=98.12 E-value=1.7e-06 Score=73.79 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 342
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.12 E-value=1.8e-06 Score=75.22 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34455578899999999999999999999999864
No 343
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.12 E-value=1.7e-06 Score=73.18 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344577899999999999999999999998864
No 344
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=2.2e-06 Score=75.63 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 23 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 23 GLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3334467799999999999999999999998864
No 345
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.12 E-value=1.8e-06 Score=71.24 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344567899999999999999999999998864
No 346
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.12 E-value=8.2e-07 Score=78.80 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34444577899999999999999999999998864
No 347
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.11 E-value=1.7e-06 Score=76.32 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444567899999999999999999999998864
No 348
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.11 E-value=1.5e-06 Score=80.51 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=30.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+||||||||||+++|++.++
T Consensus 45 ~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34455578899999999999999999999998864
No 349
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.11 E-value=1.9e-06 Score=74.57 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999999864
No 350
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.11 E-value=1.8e-06 Score=72.65 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 22 ~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 22 KDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 34444578899999999999999999999998764
No 351
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.11 E-value=2.7e-06 Score=71.83 Aligned_cols=35 Identities=29% Similarity=0.225 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 25 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (207)
T cd03369 25 KNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE 59 (207)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34444577899999999999999999999998764
No 352
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.11 E-value=2e-06 Score=72.37 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 353
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.11 E-value=1.7e-06 Score=74.73 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=31.0
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 4445555678899999999999999999999998753
No 354
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.11 E-value=1.8e-06 Score=72.95 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445578899999999999999999999998864
No 355
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.11 E-value=8.3e-07 Score=86.07 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+..|.+++|+|+||||||||+++|++.++
T Consensus 23 l~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred eeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444577899999999999999999999998863
No 356
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.11 E-value=3e-06 Score=74.04 Aligned_cols=35 Identities=23% Similarity=0.376 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444567899999999999999999999998864
No 357
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.11 E-value=2.7e-06 Score=74.74 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=30.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 344455577899999999999999999999998864
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.11 E-value=7.8e-07 Score=85.36 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+..|++++|+||||||||||+++|++.++
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 34444577899999999999999999999998863
No 359
>PHA03132 thymidine kinase; Provisional
Probab=98.11 E-value=2.6e-05 Score=74.84 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++|+|.|..||||||+++.|++.+
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999999876
No 360
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=98.11 E-value=1.1e-06 Score=68.87 Aligned_cols=30 Identities=33% Similarity=0.445 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+|+||||||||++.|++.+.
T Consensus 7 ~i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 7 EIKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEcCCCEEEEEccCCCccccceeeeccccc
Confidence 467799999999999999999999998764
No 361
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.6e-06 Score=75.44 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334467799999999999999999999998864
No 362
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.5e-06 Score=75.18 Aligned_cols=34 Identities=24% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 27 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 27 NVSFEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344467899999999999999999999998864
No 363
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.10 E-value=7.5e-07 Score=79.12 Aligned_cols=34 Identities=21% Similarity=0.452 Sum_probs=29.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|.+++|+|+||||||||++.|++.+
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444456789999999999999999999999875
No 364
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2e-06 Score=74.41 Aligned_cols=35 Identities=29% Similarity=0.390 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 365
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=1.8e-06 Score=76.78 Aligned_cols=35 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 24 HDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33344567799999999999999999999998864
No 366
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.10 E-value=2e-05 Score=65.16 Aligned_cols=140 Identities=19% Similarity=0.171 Sum_probs=61.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHH-HHh---hcccchhh---hhhhccc
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF-LTM---IDKNELLE---YALVYGD 164 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~---~~~~~~~ 164 (284)
+|.|.|..|||++|+++.|++.++...+..................+...+.... ... .....+.. .......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 6899999999999999999999863333221111110000001011111111111 000 00000000 0011111
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIA 236 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~ 236 (284)
++....+.+.++.+.| +||+.+-...+ +.+.. ...+-||+.+| .+...+|+.+|.+.+.++..+.+.
T Consensus 81 ~~~~~~~~i~~la~~~-~~Vi~GR~a~~--il~~~-~~~l~V~i~A~-~~~Rv~ri~~~~~~s~~~A~~~i~ 147 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKG-NCVIVGRCANY--ILRDI-PNVLHVFIYAP-LEFRVERIMEREGISEEEAEKLIK 147 (179)
T ss_dssp HHHHHHHHHHHHHH----EEEESTTHHH--HTTT--TTEEEEEEEE--HHHHHHHHHHHHT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-CEEEEecCHhh--hhCCC-CCeEEEEEECC-HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 1222223455555555 67777644332 22222 46788999997 799999999997766655554444
No 367
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.10 E-value=2.6e-06 Score=77.28 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 34444578899999999999999999999998864
No 368
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=2.2e-06 Score=73.76 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+..|++++|+|+||||||||++.|++.++
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344467799999999999999999999998864
No 369
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.10 E-value=1.9e-06 Score=72.81 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 33444567899999999999999999999998764
No 370
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.10 E-value=1.9e-06 Score=76.22 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 25 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344567899999999999999999999998864
No 371
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.09 E-value=1.9e-06 Score=76.54 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334467799999999999999999999998864
No 372
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.09 E-value=2.2e-06 Score=75.36 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999999864
No 373
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.09 E-value=2.2e-06 Score=73.01 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|.+++|+||||||||||+++|++..+
T Consensus 22 ~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 22 NVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3444567899999999999999999999998754
No 374
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.09 E-value=2.1e-06 Score=74.11 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 54 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD 54 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3344467799999999999999999999998864
No 375
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=2e-06 Score=72.83 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=27.6
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+| +++|+|+||||||||+++|++.++
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 344456668 999999999999999999998764
No 376
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.09 E-value=2.3e-06 Score=73.26 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 31 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 31 QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34444577899999999999999999999998864
No 377
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.09 E-value=5.3e-06 Score=71.72 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CCceeE
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESR-DSLRFV 120 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~ 120 (284)
+.+++|.+++++|+||+||||++++|.+.+ |..+.+
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v 81 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV 81 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence 347889999999999999999999998874 444444
No 378
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1e-06 Score=77.02 Aligned_cols=34 Identities=38% Similarity=0.512 Sum_probs=28.7
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||++.|++.+.
T Consensus 28 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 28 DITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3334467799999999999999999999998764
No 379
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1.2e-06 Score=77.34 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444557789999999999999999999999865
No 380
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=2.9e-06 Score=75.01 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.0
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33467799999999999999999999998864
No 381
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=1e-06 Score=76.82 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 44445577899999999999999999999998764
No 382
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.08 E-value=3e-06 Score=72.96 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3344567899999999999999999999998864
No 383
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.08 E-value=4.9e-06 Score=81.22 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=30.9
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+++|+.++|+|+||||||||++.|++.++
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 344555678899999999999999999999999875
No 384
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.07 E-value=4.7e-07 Score=74.54 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=40.3
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..++....|+...++.++++. +..|++-+|+||||+||||++..+.+.-+
T Consensus 6 L~~~~vsVsF~GF~Aln~ls~~------v~~Gelr~lIGpNGAGKTT~mD~ItGKtr 56 (249)
T COG4674 6 LYLDGVSVSFGGFKALNDLSFS------VDPGELRVLIGPNGAGKTTLMDVITGKTR 56 (249)
T ss_pred EEEeceEEEEcceeeeeeeEEE------ecCCeEEEEECCCCCCceeeeeeecccCC
Confidence 4555566667777777777777 45599999999999999999999977643
No 385
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.07 E-value=1.1e-06 Score=77.20 Aligned_cols=34 Identities=18% Similarity=0.401 Sum_probs=28.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3444456789999999999999999999999863
No 386
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.07 E-value=1.8e-06 Score=79.51 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=29.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998864
No 387
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.07 E-value=2.5e-06 Score=73.80 Aligned_cols=35 Identities=26% Similarity=0.259 Sum_probs=29.9
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34455567889999999999999999999999873
No 388
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.07 E-value=2.4e-06 Score=78.12 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+..|++++|+||||||||||+++|++.++
T Consensus 20 ~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344467799999999999999999999999864
No 389
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.07 E-value=2.3e-06 Score=75.35 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+..|.+++|+|+||||||||+++|++.++
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444577899999999999999999999998864
No 390
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=2.4e-06 Score=75.91 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13641 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLK 58 (287)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3334467899999999999999999999998864
No 391
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=2e-06 Score=72.40 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eEEEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3344467899999999999999999999998754
No 392
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.06 E-value=2.7e-06 Score=72.18 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.8
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444567899999999999999999999998864
No 393
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=1.1e-06 Score=84.35 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+..|++++|+||||||||||+++|++.++
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred ecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344444577899999999999999999999998864
No 394
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.06 E-value=3.5e-06 Score=76.29 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 25 RISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3444577899999999999999999999999864
No 395
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.06 E-value=2.4e-06 Score=74.53 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=28.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 22 ~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred eEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3334467799999999999999999999998864
No 396
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.06 E-value=2.8e-06 Score=72.75 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=28.7
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 3344467799999999999999999999998754
No 397
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=1.3e-06 Score=77.45 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 25 DISFSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 3344467799999999999999999999999864
No 398
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.05 E-value=2.8e-05 Score=64.26 Aligned_cols=178 Identities=12% Similarity=0.082 Sum_probs=88.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCC-CCCC---ceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG-EENG---KDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
--+|+|.|.+-||||||++.|.+.+++...+.-+.--++... +.+. .++..++.-.+..+.. ...-+..-+.+.
T Consensus 4 ~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~--~ia~~l~~~~~~ 81 (225)
T KOG3308|consen 4 TLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLE--KIATWLDSRHNA 81 (225)
T ss_pred EEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHH--HHHHHhcCcccc
Confidence 357999999999999999999999876655544433333211 1111 1111222222222211 000011000000
Q ss_pred -----cCCCHH----HHH---HHHHcCCcEEEEecHH-HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCH----
Q 023332 166 -----KGIPKK----QIR---EYMAKGYDIILRVDIQ-GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESR---- 228 (284)
Q Consensus 166 -----yg~~~~----~i~---~~l~~g~~vvld~~~~-~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~---- 228 (284)
.....+ ..+ .-......|++|+..- ....+...+ +..|++..| .+++++|-..|.....
T Consensus 82 ~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~---d~~im~~~~-y~~~krRr~~Rt~y~p~~tg 157 (225)
T KOG3308|consen 82 PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLF---DRIIMLTLD-YETCKRRREARTYYPPDDTG 157 (225)
T ss_pred chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhh---hhheeeecc-HHHHHHhhcccccCCCCCCc
Confidence 000111 011 1122345688886541 112222232 466778886 7999999888875321
Q ss_pred ---HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 229 ---EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 229 ---~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..+.-.....+.+......-|.+++|++-+-+..-.+|...+...
T Consensus 158 yfd~~~~P~Y~~~~~~~~d~~~h~~~flngdvs~e~~~~~v~~~i~~~ 205 (225)
T KOG3308|consen 158 YFDPVVWPHYEKNFEEARDRSRHDSLFLNGDVSEEKLDDKVNESINQR 205 (225)
T ss_pred cccCccchHHHHHHHHHHhhcccceeeecccchhhhchhhhhhhhccc
Confidence 111122222333444444558888998766666666666665443
No 399
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.05 E-value=4e-06 Score=71.72 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+|+||||||||++.|++.++
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999999999999999999998754
No 400
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.05 E-value=3.3e-06 Score=70.70 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=28.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..++.+.+|++++|+|+||||||||+++|++.+
T Consensus 27 ~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 27 NVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 333446779999999999999999999999876
No 401
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=2.7e-06 Score=75.13 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 20 GINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344567899999999999999999999998864
No 402
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.05 E-value=2.7e-06 Score=78.33 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++.+.
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444567899999999999999999999999863
No 403
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.05 E-value=1.8e-06 Score=77.48 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=29.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444457789999999999999999999999875
No 404
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.05 E-value=2.9e-06 Score=73.33 Aligned_cols=35 Identities=20% Similarity=0.298 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998753
No 405
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=2.5e-06 Score=75.92 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 29 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 29 NTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3444567899999999999999999999998864
No 406
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.04 E-value=3e-06 Score=73.85 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=30.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 344445577899999999999999999999998864
No 407
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=2.6e-06 Score=76.44 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=29.3
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 25 NVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred eeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3444577899999999999999999999999864
No 408
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=3.1e-06 Score=74.97 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 29 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 29 VNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334467799999999999999999999998864
No 409
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.04 E-value=3.1e-06 Score=72.06 Aligned_cols=32 Identities=22% Similarity=0.333 Sum_probs=27.9
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+|+||||||||+++|++.++
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 33467799999999999999999999998763
No 410
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.04 E-value=4e-06 Score=75.98 Aligned_cols=35 Identities=20% Similarity=0.072 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 33444577899999999999999999999998874
No 411
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.03 E-value=3e-06 Score=75.43 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 25 DVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred eEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3334467899999999999999999999998754
No 412
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.03 E-value=3e-06 Score=80.21 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=29.7
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|.|||||||++++|++..+
T Consensus 309 ~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred eeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4444578899999999999999999999999864
No 413
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.03 E-value=3.4e-06 Score=74.08 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+...+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 39 il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 39 ALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3445566678899999999999999999999999864
No 414
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3.4e-06 Score=73.32 Aligned_cols=35 Identities=26% Similarity=0.443 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34445577899999999999999999999998763
No 415
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.03 E-value=7.4e-06 Score=75.14 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+..|++++|+||||||||||+++|++.+.
T Consensus 23 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 23 DLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344467799999999999999999999998754
No 416
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.03 E-value=1.8e-06 Score=75.35 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34445577899999999999999999999998753
No 417
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=3.2e-05 Score=68.47 Aligned_cols=126 Identities=21% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEe---------eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVV---------TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA 159 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (284)
+-++++|+|+.|||||-|+--|+.++++..+.. +.++.+....+..|...+.+..-.....+....|...
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~- 84 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDD- 84 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHH-
Confidence 457899999999999999999998876433221 2223333333333433332211111111112222222
Q ss_pred hhcccccCCCHHHHHHHHHcCCcEEEEecH-HHHHHHHHH-------------------hCCCeEEEEEecCCHHHHHHH
Q 023332 160 LVYGDYKGIPKKQIREYMAKGYDIILRVDI-QGAQTLRRV-------------------LGDSAVFVFLMAESETALVER 219 (284)
Q Consensus 160 ~~~~~~yg~~~~~i~~~l~~g~~vvld~~~-~~~~~l~~~-------------------~g~~~~~I~l~~p~~~~l~~R 219 (284)
....|+++...|+..|+.|.. .....+... +..++.++|++++ ..+|.+|
T Consensus 85 ---------a~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~-~~VL~~~ 154 (348)
T KOG1384|consen 85 ---------ASRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDAD-QAVLFER 154 (348)
T ss_pred ---------HHHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecc-hHHHHHH
Confidence 234788899999987777644 333333222 0134788999997 5999999
Q ss_pred HHhhcc
Q 023332 220 LVERKT 225 (284)
Q Consensus 220 l~~R~~ 225 (284)
|-+|-+
T Consensus 155 l~~RVD 160 (348)
T KOG1384|consen 155 LDKRVD 160 (348)
T ss_pred HHHHHH
Confidence 998864
No 418
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.03 E-value=3.2e-06 Score=77.42 Aligned_cols=33 Identities=27% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344567899999999999999999999999864
No 419
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=5.3e-06 Score=75.60 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=61.7
Q ss_pred hhhHHhhc--ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHH
Q 023332 69 RSLEASLG--HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKE 144 (284)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~ 144 (284)
..+.+.|+ .....++++.++.|+.++++|++|+||||+++.|-++++ ...|.+ +|+++..+...
T Consensus 266 ~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD------------~~sG~I~id~qdir~vtq~ 333 (497)
T COG5265 266 INVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD------------VNSGSITIDGQDIRDVTQQ 333 (497)
T ss_pred EEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC------------CcCceEEEcchhHHHhHHH
Confidence 34444443 234556667788899999999999999999999999987 344433 66776666655
Q ss_pred HHHHh---hcccchhhhhhhccc-ccCCCH
Q 023332 145 EFLTM---IDKNELLEYALVYGD-YKGIPK 170 (284)
Q Consensus 145 ~~~~~---~~~~~~~~~~~~~~~-~yg~~~ 170 (284)
...+. +.++..+++.+...| .||...
T Consensus 334 slR~aIg~VPQDtvLFNDti~yni~ygr~~ 363 (497)
T COG5265 334 SLRRAIGIVPQDTVLFNDTIAYNIKYGRPD 363 (497)
T ss_pred HHHHHhCcCcccceehhhhHHHHHhccCcc
Confidence 55443 456777777765544 477654
No 420
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.02 E-value=4.6e-06 Score=72.91 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 39 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 72 (257)
T cd03288 39 HVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD 72 (257)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC
Confidence 3334467899999999999999999999998864
No 421
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=3.5e-06 Score=76.04 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 43 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 43 NNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444577899999999999999999999998864
No 422
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.02 E-value=5.3e-06 Score=75.14 Aligned_cols=69 Identities=20% Similarity=0.262 Sum_probs=46.6
Q ss_pred hhhHHhh-cccccCC-CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHH
Q 023332 69 RSLEASL-GHAFDSN-PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKE 144 (284)
Q Consensus 69 ~~~~~~~-~~~~~~~-~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~ 144 (284)
++++..| +.++..+ +++.+++|+++.|+|.|||||||+++.|.+.+. |..|++ +|..+..-+.+
T Consensus 326 rnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~------------PqsG~I~ldg~pV~~e~le 393 (546)
T COG4615 326 RNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKPVSAEQLE 393 (546)
T ss_pred eeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC------------CCCCceeECCccCCCCCHH
Confidence 3444434 3444443 344578999999999999999999999999875 555554 45554444555
Q ss_pred HHHHh
Q 023332 145 EFLTM 149 (284)
Q Consensus 145 ~~~~~ 149 (284)
+|..+
T Consensus 394 dYR~L 398 (546)
T COG4615 394 DYRKL 398 (546)
T ss_pred HHHHH
Confidence 55554
No 423
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=3.3e-06 Score=75.09 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=29.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4444577899999999999999999999998864
No 424
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.01 E-value=3.4e-06 Score=72.03 Aligned_cols=34 Identities=26% Similarity=0.403 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++.+.+|++++|+|+||||||||++.|++.++
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444567899999999999999999999998764
No 425
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.00 E-value=4.9e-06 Score=72.34 Aligned_cols=38 Identities=18% Similarity=0.280 Sum_probs=30.4
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeE
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 120 (284)
+++.+..|++++|+|+||||||||+++|++.++..+.+
T Consensus 15 vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i 52 (248)
T PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSI 52 (248)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEE
Confidence 33446779999999999999999999999876533333
No 426
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=3.4e-06 Score=74.46 Aligned_cols=34 Identities=26% Similarity=0.150 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.+.
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3334467899999999999999999999998864
No 427
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.00 E-value=3.8e-06 Score=73.92 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444567799999999999999999999998754
No 428
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=3.5e-06 Score=74.18 Aligned_cols=34 Identities=29% Similarity=0.619 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4444557889999999999999999999999875
No 429
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.00 E-value=4e-06 Score=71.50 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=28.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++....|++++|+|+||||||||++.|++.++
T Consensus 23 ~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~ 56 (220)
T TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS 56 (220)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3334467799999999999999999999998764
No 430
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=4.1e-06 Score=72.83 Aligned_cols=35 Identities=31% Similarity=0.461 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 34445577899999999999999999999998653
No 431
>PLN02748 tRNA dimethylallyltransferase
Probab=98.00 E-value=8.8e-06 Score=76.49 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=51.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEe---------eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVV---------TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (284)
..+.+|+|+||+|||||||+..|++.+++..+.. +.++-++...+..+..+++++.-.....+....|.
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~-- 97 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR-- 97 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH--
Confidence 4577999999999999999999999875322211 22333343334445555543221111111111111
Q ss_pred hhhcccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 159 ALVYGDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 159 ~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
......|+++...|+..|+.|..
T Consensus 98 --------~~A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 98 --------DHAVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred --------HHHHHHHHHHHhcCCCeEEEcCh
Confidence 11234677788888877777533
No 432
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.00 E-value=5.6e-06 Score=72.35 Aligned_cols=29 Identities=28% Similarity=0.555 Sum_probs=26.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+|++++|+|+||||||||++.|++.++
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 57799999999999999999999999875
No 433
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=69.36 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|+.++|+|+||||||||++.|.+.+.
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 34445578899999999999999999999998864
No 434
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=4.1e-06 Score=73.12 Aligned_cols=35 Identities=26% Similarity=0.407 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34444577899999999999999999999998754
No 435
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=3.8e-06 Score=73.56 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||++.|++.+
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444557789999999999999999999999875
No 436
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=5.4e-06 Score=73.33 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3344467799999999999999999999998864
No 437
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.99 E-value=4e-06 Score=72.87 Aligned_cols=34 Identities=21% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444457789999999999999999999999864
No 438
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.99 E-value=2e-06 Score=82.18 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34444577899999999999999999999998764
No 439
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=97.99 E-value=6.3e-05 Score=64.07 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
++.-.+++|++|+||.|.+..|++.++..++...+..|..... +.. ........+..+.+....-+.
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~---~te----lg~~~~~~~~~g~lvpDeiv~------ 80 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIAS---GTE----LGKEAKEAIDKGKLVPDEVVV------ 80 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhc---cCc----HHHHHHHHHHhcCcCcHHHHH------
Confidence 3566899999999999999999998875554444433321110 000 001112222233333221111
Q ss_pred CHHHHHHHHHcC---CcEEEEecHHHHH---HHHHHhCCCeEEEEEecCCHHHHHHHHHhh-------------------
Q 023332 169 PKKQIREYMAKG---YDIILRVDIQGAQ---TLRRVLGDSAVFVFLMAESETALVERLVER------------------- 223 (284)
Q Consensus 169 ~~~~i~~~l~~g---~~vvld~~~~~~~---~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R------------------- 223 (284)
..+.+.++.. +..++|+...... .+....-..+.+|.+.+| .+.+.+|+..|
T Consensus 81 --~~l~~~l~~~~~~~~~ildg~Prt~~qa~~l~~~~~~~d~Vi~l~vp-~~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~ 157 (235)
T KOG3078|consen 81 --RLLEKRLENPRCQKGFILDGFPRTVQQAEELLDRIAQIDLVINLKVP-EEVLVDRITGRRIHPASGRVYHLEFNPPKV 157 (235)
T ss_pred --HHHHhhccccccccccccCCCCcchHHHHHHHHccCCcceEEEecCC-HHHHHHHHhcccccCcccceecccccCCcc
Confidence 1122233333 5677787653222 222222145678889998 48888876555
Q ss_pred --------------ccCCHHHHHHHHHHHHHHh----hc-cCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 023332 224 --------------KTESREELLVRIATAREEI----KH-VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQR 280 (284)
Q Consensus 224 --------------~~~~~~~i~~rl~~~~~e~----~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~ 280 (284)
..++++.+..|++...... ++ .....++..++.. .+++...+...+........+.
T Consensus 158 ~~~dDitgepL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~~-~~~v~~~v~~~l~~~~~~~~~~ 232 (235)
T KOG3078|consen 158 PGKDDITGEPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGEK-PEEVFPNVYAFLSKKVPEREQK 232 (235)
T ss_pred ccccccccChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCcc-hhHhHHHHHHHHHhhhhhhhhh
Confidence 3345677888887655421 11 1223445555544 6777777777777765555544
No 440
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.99 E-value=4.8e-06 Score=71.62 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++.+.+|++++|+|+||||||||+++|++.++
T Consensus 17 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 17 DGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444567799999999999999999999998864
No 441
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.98 E-value=4.3e-06 Score=74.14 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 53 L~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 334445577899999999999999999999998864
No 442
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4e-06 Score=73.31 Aligned_cols=34 Identities=21% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||++.|++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3444457789999999999999999999999875
No 443
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.98 E-value=1.6e-06 Score=82.96 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+..|++++|+||||||||||+++|++.++
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998863
No 444
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4.8e-06 Score=72.32 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=29.4
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 20 KSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred ecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34444577899999999999999999999998754
No 445
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=97.98 E-value=6.4e-05 Score=64.05 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+|+++|.||.|||++++.|++.+.
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~ 37 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLN 37 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46799999999999999999998764
No 446
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.9e-06 Score=84.86 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=29.5
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+++.+..|.+++|+|+||||||||+++|++.+
T Consensus 17 l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444457789999999999999999999999875
No 447
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4.8e-06 Score=72.52 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=29.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3344456789999999999999999999999875
No 448
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4e-06 Score=76.69 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 17 vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344467899999999999999999999998863
No 449
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.97 E-value=2e-06 Score=82.58 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=28.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++.++
T Consensus 29 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 29 GIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344467799999999999999999999998864
No 450
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4.7e-06 Score=73.30 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=29.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444557789999999999999999999999875
No 451
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=2.6e-06 Score=83.90 Aligned_cols=37 Identities=24% Similarity=0.143 Sum_probs=30.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+...+++.+.+|.+++|+||||||||||+++|++.++
T Consensus 327 il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~ 363 (638)
T PRK10636 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA 363 (638)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344555578899999999999999999999998753
No 452
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.97 E-value=4.7e-06 Score=73.03 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||++.|++.+.
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34444567899999999999999999999998864
No 453
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=5.4e-06 Score=70.33 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+ ++++|+|+||||||||+++|++.++
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 44455778 9999999999999999999998864
No 454
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.96 E-value=5.4e-05 Score=61.35 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q 023332 93 IVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~ 113 (284)
|+|+|++|+|||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999887
No 455
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.96 E-value=6.7e-06 Score=70.08 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=31.1
Q ss_pred ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 77 HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 77 ~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+...++.++..|+-.+|+||||||||||+++|+..++
T Consensus 44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 444455555577799999999999999999999976644
No 456
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=4.9e-06 Score=72.38 Aligned_cols=35 Identities=37% Similarity=0.541 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|.+++|+|+||||||||++.|++.++
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 44444567899999999999999999999998864
No 457
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.96 E-value=4.4e-06 Score=69.80 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++.+.+|++++|+|+||||||||++.|++.+
T Consensus 25 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 25 NISGYVKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred ccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334446779999999999999999999999753
No 458
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.5e-06 Score=72.10 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=29.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||++.|++..
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3444457789999999999999999999999874
No 459
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.2e-06 Score=72.98 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3444557789999999999999999999999876
No 460
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.95 E-value=5.5e-06 Score=65.58 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=30.7
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+....++++.+|+++.++||||||||||...+.+.+.
T Consensus 17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 3444555678899999999999999999999988875
No 461
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.95 E-value=9.2e-06 Score=68.28 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=29.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...+++.+.+|++++|+|+||||||||++.|++.
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445556788999999999999999999999987
No 462
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.6e-06 Score=72.04 Aligned_cols=34 Identities=24% Similarity=0.322 Sum_probs=28.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++..
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444456789999999999999999999999864
No 463
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.9e-06 Score=72.51 Aligned_cols=34 Identities=26% Similarity=0.429 Sum_probs=29.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4445557789999999999999999999999764
No 464
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.5e-06 Score=72.05 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=28.6
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++.+.+|++++|+|+||||||||++.|++.+
T Consensus 22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 22 GISLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 344456789999999999999999999999876
No 465
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=97.94 E-value=0.00054 Score=54.65 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=89.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeee--ccccC------CC-------CCCCCceeEecCHHHHHHhh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTA--TSRPM------RP-------GEENGKDYYFVSKEEFLTMI 150 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~--~~r~~------~~-------~~~~~~~~~~~~~~~~~~~~ 150 (284)
..+|+||.|-|.+-+|||+++..+...... +..+-.+ -++-+ .. .+.+|.....+-...+.
T Consensus 20 ~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~--- 96 (205)
T COG3896 20 MPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPIL--- 96 (205)
T ss_pred CCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHH---
Confidence 467999999999999999999999775431 0000000 00000 00 00112111111111000
Q ss_pred cccchhhhhhhcccccCCCHHHHHHHHHcCCcEEEEecHH---HHHH-HHHHhCCCeEEEEEecCCHHHHHHHHHhhccC
Q 023332 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQ---GAQT-LRRVLGDSAVFVFLMAESETALVERLVERKTE 226 (284)
Q Consensus 151 ~~~~~~~~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~---~~~~-l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~ 226 (284)
+ ....-....|...+..|.+++.|.... .+.. +....|+++..|-+.+|+ |++.+|-..|.+.
T Consensus 97 ------e------~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~g~~v~~VGV~~p~-E~~~~Re~rr~dR 163 (205)
T COG3896 97 ------E------LAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVLEGCRVWMVGVHVPD-EEGARRELRRGDR 163 (205)
T ss_pred ------H------HHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHHhCCceEEEEeeccH-HHHHHHHhhcCCc
Confidence 0 000112235666788899999985442 2222 333447889999999985 7776665556543
Q ss_pred CHHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 227 SREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 227 ~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
..- +..- ...+.-....||+-+..+..++.++..+|.+.++
T Consensus 164 ~pG-~~rg---~~r~vHa~~~YDlevDTS~~tp~EcAr~i~~r~q 204 (205)
T COG3896 164 HPG-WNRG---SARAVHADAEYDLEVDTSATTPHECAREIHERYQ 204 (205)
T ss_pred Ccc-hhhh---hHHHhcCCcceeeeecccCCCHHHHHHHHHHHhc
Confidence 221 1111 1222222346888877666789999988877653
No 466
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.94 E-value=8.3e-06 Score=70.74 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+++.+.+|.+++|+|+||||||||+++|++..
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 17 LRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 34445557889999999999999999999999873
No 467
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=5.4e-06 Score=72.48 Aligned_cols=35 Identities=31% Similarity=0.520 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33444577899999999999999999999998753
No 468
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.94 E-value=6.6e-06 Score=71.58 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=29.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|.+++|+|+||||||||+++|++.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 21 KNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3444457789999999999999999999999875
No 469
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.93 E-value=6e-06 Score=71.29 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=28.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++.+.+|++++|+|+||||||||++.|++.++
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 18 DVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3344467799999999999999999999998764
No 470
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.93 E-value=0.0001 Score=66.73 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.|+|+|++|+|||||++.|++.++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999999865
No 471
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=5.8e-06 Score=72.02 Aligned_cols=34 Identities=24% Similarity=0.447 Sum_probs=28.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|++++|+|+||||||||+++|++..
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 3444456789999999999999999999999764
No 472
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.93 E-value=6e-06 Score=71.19 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=28.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+|+||||||||++.|++.++
T Consensus 17 ~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 17 NVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 3344567799999999999999999999998754
No 473
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.93 E-value=5.7e-06 Score=71.96 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=28.9
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...+++.+.+|++++|+|+||||||||+++|++.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eecceeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3444455778999999999999999999999985
No 474
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.93 E-value=0.00012 Score=60.85 Aligned_cols=122 Identities=18% Similarity=0.181 Sum_probs=62.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
..|..++|+|++||||||+++.|.+.++. ...+......+... ........... ..... ....
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~--~~~~~~~~~~~---------~~~~~-----~~~~ 86 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL--PHPNWVRLVTR---------PGNVE-----GSGE 86 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC--CCCCEEEEEEe---------cCCCC-----CCCc
Confidence 45889999999999999999999887652 22221111100000 00000000000 00000 0000
Q ss_pred CCCHHHHHHHHHcCCcEEEEecH---HHHHHHHH-HhCCCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDI---QGAQTLRR-VLGDSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~-~~g~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
-...+.++..+..+.++++.++. +.+..+.. ..|....+--+++.+.....+|+.....
T Consensus 87 ~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~ 149 (186)
T cd01130 87 VTMADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAEEALTRLELLPS 149 (186)
T ss_pred cCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHHHhcCCCCceeeecCCCHHHHHHHHHHHHh
Confidence 01123445566777778887755 22221211 2244435556777777888899987754
No 475
>PHA00729 NTP-binding motif containing protein
Probab=97.92 E-value=9.6e-05 Score=62.97 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
-|+|+|++|+|||||+..|+..+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998764
No 476
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.92 E-value=3.1e-06 Score=83.36 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+...+++.+.+|.+++|+|+||||||||+++|++.++
T Consensus 334 il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~ 370 (635)
T PRK11147 334 LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ 370 (635)
T ss_pred EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3344455578899999999999999999999998753
No 477
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=6.2e-06 Score=72.17 Aligned_cols=35 Identities=29% Similarity=0.386 Sum_probs=29.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44445577899999999999999999999998754
No 478
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.92 E-value=2.8e-06 Score=81.89 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=30.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+..|++++|+|+||||||||++.|++.++
T Consensus 25 l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 25 VNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred eeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 344445577899999999999999999999999864
No 479
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.92 E-value=9.1e-06 Score=71.64 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=28.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...++.+.+|++++|+|+||||||||+++|++.+
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3344456789999999999999999999999875
No 480
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=6.1e-06 Score=71.62 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=28.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++.+.+|++++|+|+||||||||+++|++.+
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 344456779999999999999999999999875
No 481
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.91 E-value=6.3e-06 Score=71.67 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=27.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+++.+.+|++++|+|+||||||||+++|++.
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 34445678999999999999999999999875
No 482
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.91 E-value=6.9e-06 Score=72.41 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=29.5
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34444577899999999999999999999998753
No 483
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.91 E-value=9.7e-06 Score=71.61 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=31.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeE
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 120 (284)
..+++.+.+|++++|+|+||||||||+++|.+.++..+.+
T Consensus 21 ~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I 60 (275)
T cd03289 21 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDI 60 (275)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEE
Confidence 3444457889999999999999999999999886533333
No 484
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=6.9e-06 Score=72.63 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34445577899999999999999999999998753
No 485
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=7e-06 Score=71.43 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+.+|.+++|+|+||||||||+++|++..
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444456789999999999999999999999875
No 486
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.90 E-value=7.2e-06 Score=74.38 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 34444578899999999999999999999998763
No 487
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.90 E-value=1e-05 Score=70.06 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+.+|++.|+.|+||||+++.|+..+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALL 106 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHH
Confidence 4668899999999999999999997654
No 488
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.90 E-value=4e-05 Score=68.19 Aligned_cols=89 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEe----------eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVV----------TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (284)
.+.+|+|+||+|||||.|+-.|++.. + .++. +.++-+|...+..+..+++++.-.....+....|.
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~-~-eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~-- 78 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGK-A-EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFY-- 78 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC-C-cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHH--
Confidence 45689999999999999999999873 2 2222 22233343333444455544322111111111111
Q ss_pred hhhcccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 159 ALVYGDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 159 ~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
....+.++++...|+..|+.|..
T Consensus 79 --------~~a~~~i~~i~~~gk~PilvGGT 101 (300)
T PRK14729 79 --------KEALKIIKELRQQKKIPIFVGGS 101 (300)
T ss_pred --------HHHHHHHHHHHHCCCCEEEEeCc
Confidence 11234667777889887777654
No 489
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.89 E-value=0.00035 Score=55.82 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
-++++|+|+-.||||||++.|+..+.
T Consensus 8 ~K~VailG~ESsGKStLv~kLA~~fn 33 (187)
T COG3172 8 VKTVAILGGESSGKSTLVNKLANIFN 33 (187)
T ss_pred heeeeeecCcccChHHHHHHHHHHhC
Confidence 47899999999999999999998764
No 490
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=97.89 E-value=1.7e-05 Score=64.43 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeE
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 120 (284)
.+..|+++-++||||||||||+..+++..+..+.+
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi 55 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSI 55 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCCCCceE
Confidence 46779999999999999999999999998754444
No 491
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=7.7e-06 Score=71.67 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.9
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 34445577899999999999999999999998864
No 492
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.89 E-value=7.7e-06 Score=78.53 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=30.3
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+++.+.+|++++|+||||||||||+++|++.++
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 344455578899999999999999999999998753
No 493
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.88 E-value=3.1e-06 Score=83.40 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=29.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+..|.+++|+|+||||||||+++|++.++
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~ 54 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL 54 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 34444567799999999999999999999998753
No 494
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.88 E-value=7.4e-06 Score=71.91 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=29.2
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+++.+.+|++++|+|+||||||||+++|++..
T Consensus 32 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 34444456789999999999999999999999875
No 495
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1.1e-05 Score=65.22 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=31.3
Q ss_pred ccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 77 HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 77 ~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+++...+++.+..|+.+++.||||+||||++++|-..|
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY 61 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY 61 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc
Confidence 44555555667889999999999999999999996654
No 496
>PRK00098 GTPase RsgA; Reviewed
Probab=97.88 E-value=1.7e-05 Score=70.97 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEee------eccccCCCCCC-------C-----CceeEecCHHHHHH
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVT------ATSRPMRPGEE-------N-----GKDYYFVSKEEFLT 148 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~------~~~r~~~~~~~-------~-----~~~~~~~~~~~~~~ 148 (284)
-.|++++|+|+||+|||||++.|.+... ..+.+.. ++++....... + ..++..++.+++..
T Consensus 162 l~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 162 LAGKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence 3578999999999999999999976543 2222221 23432211111 1 12233455555544
Q ss_pred hhcc-cchhhhhhhcc-cccCCCHHHHHHHHHcCC
Q 023332 149 MIDK-NELLEYALVYG-DYKGIPKKQIREYMAKGY 181 (284)
Q Consensus 149 ~~~~-~~~~~~~~~~~-~~yg~~~~~i~~~l~~g~ 181 (284)
.+.. ..+.....+.+ .+++.+...++++++.|.
T Consensus 242 ~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~ 276 (298)
T PRK00098 242 YFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGE 276 (298)
T ss_pred HHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCC
Confidence 3222 11122222332 357777888888898887
No 497
>PRK13409 putative ATPase RIL; Provisional
Probab=97.87 E-value=1e-05 Score=78.79 Aligned_cols=35 Identities=26% Similarity=0.273 Sum_probs=29.6
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.++ .+.+|++++|+||||||||||+++|++.+.
T Consensus 90 L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 90 LYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred EecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34444 478899999999999999999999999864
No 498
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=8.9e-06 Score=78.45 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34444577899999999999999999999998764
No 499
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.2e-05 Score=71.44 Aligned_cols=34 Identities=21% Similarity=0.396 Sum_probs=28.7
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++.+..|++++|+|+||||||||+++|++..
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3444457789999999999999999999999853
No 500
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.86 E-value=1.3e-05 Score=78.78 Aligned_cols=35 Identities=17% Similarity=0.090 Sum_probs=30.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++.+.+|++++|+|+||||||||+++|++.++
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~ 375 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE 375 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 44555678899999999999999999999998864
Done!