Query 023332
Match_columns 284
No_of_seqs 344 out of 2946
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 05:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ex7_A Guanylate kinase; subst 100.0 2.6E-35 8.9E-40 243.6 15.1 181 91-273 2-185 (186)
2 3tau_A Guanylate kinase, GMP k 100.0 4.6E-30 1.6E-34 216.4 14.4 190 88-280 6-196 (208)
3 3a00_A Guanylate kinase, GMP k 100.0 1.3E-29 4.6E-34 209.8 10.7 180 90-272 1-184 (186)
4 3ney_A 55 kDa erythrocyte memb 100.0 9.3E-29 3.2E-33 205.8 13.0 177 85-274 14-191 (197)
5 2qor_A Guanylate kinase; phosp 100.0 2E-27 6.9E-32 199.4 17.9 186 87-275 9-199 (204)
6 3tr0_A Guanylate kinase, GMP k 99.9 4.2E-27 1.4E-31 196.8 16.5 194 86-282 3-196 (205)
7 1s96_A Guanylate kinase, GMP k 99.9 1.6E-26 5.6E-31 196.1 19.4 190 87-279 13-204 (219)
8 3tvt_A Disks large 1 tumor sup 99.9 1.6E-26 5.3E-31 203.5 13.2 182 88-277 98-281 (292)
9 3lnc_A Guanylate kinase, GMP k 99.9 3E-26 1E-30 195.8 12.0 196 82-279 19-215 (231)
10 1kjw_A Postsynaptic density pr 99.9 8.9E-26 3E-30 199.5 14.2 180 88-276 103-285 (295)
11 1kgd_A CASK, peripheral plasma 99.9 3.6E-26 1.2E-30 188.2 10.5 173 88-272 3-178 (180)
12 1lvg_A Guanylate kinase, GMP k 99.9 4.4E-25 1.5E-29 184.5 16.8 188 88-278 2-193 (198)
13 2j41_A Guanylate kinase; GMP, 99.9 1.3E-24 4.6E-29 181.7 14.1 194 85-281 1-195 (207)
14 2xkx_A Disks large homolog 4; 99.9 2.3E-22 7.7E-27 197.8 18.7 181 87-276 528-711 (721)
15 1z6g_A Guanylate kinase; struc 99.9 1.4E-21 4.9E-26 165.5 17.5 195 84-280 17-215 (218)
16 1znw_A Guanylate kinase, GMP k 99.7 9.6E-17 3.3E-21 134.5 19.0 182 86-270 16-199 (207)
17 3tsz_A Tight junction protein 99.7 1.7E-17 5.8E-22 151.9 14.3 152 88-276 230-384 (391)
18 3shw_A Tight junction protein 99.7 3.2E-17 1.1E-21 152.3 12.2 154 87-276 221-376 (468)
19 4eaq_A DTMP kinase, thymidylat 99.6 8.1E-15 2.8E-19 124.8 13.8 177 87-275 23-227 (229)
20 3lv8_A DTMP kinase, thymidylat 99.6 1E-14 3.5E-19 124.5 13.9 178 89-277 26-233 (236)
21 4edh_A DTMP kinase, thymidylat 99.6 1.5E-14 5.3E-19 121.7 14.7 177 89-276 5-210 (213)
22 3lw7_A Adenylate kinase relate 99.6 4.9E-14 1.7E-18 113.6 16.9 166 91-273 2-177 (179)
23 2c95_A Adenylate kinase 1; tra 99.6 6.4E-15 2.2E-19 121.5 11.9 173 88-273 7-194 (196)
24 1nn5_A Similar to deoxythymidy 99.6 7.1E-15 2.4E-19 123.0 11.5 181 85-276 4-204 (215)
25 3tlx_A Adenylate kinase 2; str 99.6 1.1E-14 3.7E-19 125.1 12.9 167 88-271 27-242 (243)
26 2bwj_A Adenylate kinase 5; pho 99.6 7.4E-15 2.5E-19 121.4 11.2 172 89-273 11-197 (199)
27 1ukz_A Uridylate kinase; trans 99.6 3.4E-14 1.2E-18 118.1 15.3 173 87-272 12-201 (203)
28 3dl0_A Adenylate kinase; phosp 99.6 8.1E-15 2.8E-19 123.2 11.6 166 92-273 2-215 (216)
29 3fb4_A Adenylate kinase; psych 99.6 1.6E-14 5.5E-19 121.3 12.8 166 91-272 1-214 (216)
30 1qf9_A UMP/CMP kinase, protein 99.6 4.2E-14 1.4E-18 116.0 14.5 168 88-272 4-191 (194)
31 3v9p_A DTMP kinase, thymidylat 99.6 5.2E-15 1.8E-19 125.7 8.9 174 88-272 23-226 (227)
32 3umf_A Adenylate kinase; rossm 99.6 9.9E-15 3.4E-19 123.0 10.4 175 87-273 26-214 (217)
33 3t61_A Gluconokinase; PSI-biol 99.6 1.8E-14 6.2E-19 119.8 11.9 161 90-278 18-185 (202)
34 3vaa_A Shikimate kinase, SK; s 99.6 5.7E-14 1.9E-18 116.7 13.9 163 86-274 21-197 (199)
35 2z0h_A DTMP kinase, thymidylat 99.6 1.7E-14 5.8E-19 119.0 10.6 171 91-273 1-192 (197)
36 4eun_A Thermoresistant glucoki 99.6 1.1E-14 3.7E-19 121.2 9.3 165 86-272 25-193 (200)
37 3kfv_A Tight junction protein 99.5 4.9E-14 1.7E-18 124.0 13.5 146 88-275 143-292 (308)
38 4tmk_A Protein (thymidylate ki 99.5 9.5E-14 3.3E-18 116.8 13.5 176 89-275 2-209 (213)
39 4i1u_A Dephospho-COA kinase; s 99.5 2.3E-14 8E-19 119.9 9.6 176 91-275 10-204 (210)
40 1knq_A Gluconate kinase; ALFA/ 99.5 1.5E-13 5.2E-18 111.4 14.3 160 88-273 6-174 (175)
41 1qhx_A CPT, protein (chloramph 99.5 9.4E-14 3.2E-18 112.9 13.0 160 90-270 3-176 (178)
42 1gvn_B Zeta; postsegregational 99.5 1.8E-14 6.2E-19 126.7 9.3 172 87-275 30-231 (287)
43 3kb2_A SPBC2 prophage-derived 99.5 4.5E-13 1.5E-17 107.9 16.7 148 91-276 2-170 (173)
44 4dey_A Voltage-dependent L-typ 99.5 4.2E-14 1.4E-18 125.1 11.3 176 88-278 140-326 (337)
45 2plr_A DTMP kinase, probable t 99.5 2.7E-13 9.2E-18 113.0 14.4 172 89-274 3-209 (213)
46 2f6r_A COA synthase, bifunctio 99.5 2.6E-14 8.9E-19 125.4 8.2 187 88-280 73-276 (281)
47 3ld9_A DTMP kinase, thymidylat 99.5 2.4E-14 8.1E-19 121.2 7.6 178 87-276 18-219 (223)
48 2v54_A DTMP kinase, thymidylat 99.5 3.1E-13 1.1E-17 112.1 13.8 170 89-275 3-193 (204)
49 1tev_A UMP-CMP kinase; ploop, 99.5 8.1E-14 2.8E-18 114.5 10.2 173 89-272 2-194 (196)
50 3cm0_A Adenylate kinase; ATP-b 99.5 7.5E-14 2.6E-18 114.3 9.7 165 88-270 2-184 (186)
51 2wwf_A Thymidilate kinase, put 99.5 7.6E-14 2.6E-18 116.5 9.9 174 87-273 7-200 (212)
52 2cdn_A Adenylate kinase; phosp 99.5 9E-14 3.1E-18 115.5 10.3 167 87-271 17-200 (201)
53 4hlc_A DTMP kinase, thymidylat 99.5 3.2E-13 1.1E-17 113.0 13.3 174 90-275 2-203 (205)
54 2rhm_A Putative kinase; P-loop 99.5 1.7E-13 5.7E-18 112.7 11.2 118 88-225 3-127 (193)
55 3sr0_A Adenylate kinase; phosp 99.5 1.1E-13 3.9E-18 115.8 9.5 166 91-272 1-204 (206)
56 3tmk_A Thymidylate kinase; pho 99.5 3.7E-13 1.3E-17 113.4 10.9 175 88-276 3-206 (216)
57 1jjv_A Dephospho-COA kinase; P 99.5 2.1E-13 7.3E-18 113.6 9.3 91 180-275 105-199 (206)
58 2pbr_A DTMP kinase, thymidylat 99.4 1.6E-12 5.4E-17 106.7 14.4 168 91-272 1-191 (195)
59 1ly1_A Polynucleotide kinase; 99.4 3.2E-13 1.1E-17 109.7 9.9 156 90-272 2-172 (181)
60 1zak_A Adenylate kinase; ATP:A 99.4 3E-13 1E-17 114.2 9.2 175 89-277 4-215 (222)
61 2xb4_A Adenylate kinase; ATP-b 99.4 1.2E-12 4E-17 110.8 11.6 164 91-270 1-222 (223)
62 3be4_A Adenylate kinase; malar 99.4 4.9E-12 1.7E-16 106.4 14.7 165 89-270 4-217 (217)
63 2vli_A Antibiotic resistance p 99.4 5.2E-12 1.8E-16 102.8 13.7 159 88-273 3-172 (183)
64 3hjn_A DTMP kinase, thymidylat 99.4 2.6E-12 8.8E-17 106.8 11.6 170 91-272 1-191 (197)
65 3trf_A Shikimate kinase, SK; a 99.4 4E-12 1.4E-16 103.8 12.6 157 90-273 5-175 (185)
66 1nks_A Adenylate kinase; therm 99.4 8.4E-13 2.9E-17 108.2 8.5 95 173-270 76-193 (194)
67 1y63_A LMAJ004144AAA protein; 99.4 3.5E-12 1.2E-16 104.5 12.2 165 84-275 4-177 (184)
68 1zd8_A GTP:AMP phosphotransfer 99.4 1.6E-12 5.5E-17 110.1 9.3 175 88-280 5-222 (227)
69 1aky_A Adenylate kinase; ATP:A 99.4 5.6E-12 1.9E-16 106.1 12.5 167 89-271 3-218 (220)
70 3a4m_A L-seryl-tRNA(SEC) kinas 99.4 6.3E-12 2.1E-16 108.8 12.9 155 89-272 3-173 (260)
71 2vp4_A Deoxynucleoside kinase; 99.3 4.1E-13 1.4E-17 114.2 3.4 73 201-274 146-226 (230)
72 1uj2_A Uridine-cytidine kinase 99.3 1.7E-11 5.7E-16 105.5 13.5 91 180-274 131-235 (252)
73 1vht_A Dephospho-COA kinase; s 99.3 3.1E-12 1E-16 107.5 8.5 90 180-274 107-196 (218)
74 2pt5_A Shikimate kinase, SK; a 99.3 8.4E-12 2.9E-16 100.3 10.5 66 202-272 93-163 (168)
75 2yvu_A Probable adenylyl-sulfa 99.3 3.6E-12 1.2E-16 104.5 8.1 162 87-272 10-183 (186)
76 3gmt_A Adenylate kinase; ssgci 99.3 3.1E-12 1.1E-16 108.3 7.9 167 90-272 8-229 (230)
77 1gtv_A TMK, thymidylate kinase 99.3 5.3E-14 1.8E-18 117.6 -3.3 167 91-268 1-209 (214)
78 2pez_A Bifunctional 3'-phospho 99.3 3.8E-12 1.3E-16 103.7 7.5 159 88-272 3-175 (179)
79 2jaq_A Deoxyguanosine kinase; 99.3 3.9E-11 1.3E-15 99.1 13.9 72 201-274 124-202 (205)
80 1kht_A Adenylate kinase; phosp 99.3 2.1E-11 7.1E-16 99.7 12.0 26 90-115 3-28 (192)
81 2if2_A Dephospho-COA kinase; a 99.3 2.3E-12 8E-17 107.0 6.3 87 181-273 106-192 (204)
82 3nwj_A ATSK2; P loop, shikimat 99.3 2.2E-11 7.7E-16 104.7 12.5 190 59-275 18-239 (250)
83 3iij_A Coilin-interacting nucl 99.3 1.3E-11 4.3E-16 100.6 10.3 156 87-272 8-170 (180)
84 2grj_A Dephospho-COA kinase; T 99.3 1.4E-11 4.7E-16 102.0 10.4 162 89-273 11-187 (192)
85 1ltq_A Polynucleotide kinase; 99.3 8.7E-12 3E-16 109.8 9.7 155 90-262 2-173 (301)
86 1e4v_A Adenylate kinase; trans 99.3 1.8E-11 6.1E-16 102.6 11.0 162 92-270 2-213 (214)
87 1uf9_A TT1252 protein; P-loop, 99.3 5.9E-12 2E-16 104.1 7.4 89 180-273 106-194 (203)
88 1kag_A SKI, shikimate kinase I 99.3 1.2E-11 4E-16 99.9 9.0 67 203-272 98-172 (173)
89 3zvl_A Bifunctional polynucleo 99.3 1.3E-11 4.5E-16 113.9 10.3 126 88-253 256-393 (416)
90 1e6c_A Shikimate kinase; phosp 99.2 6.5E-11 2.2E-15 95.4 12.1 69 203-272 95-170 (173)
91 4e22_A Cytidylate kinase; P-lo 99.2 9.4E-12 3.2E-16 107.2 7.6 92 178-274 143-246 (252)
92 1ak2_A Adenylate kinase isoenz 99.2 1.2E-09 4.1E-14 92.7 19.4 170 88-273 14-231 (233)
93 3uie_A Adenylyl-sulfate kinase 99.2 2.5E-11 8.5E-16 100.7 7.3 159 88-274 23-196 (200)
94 3asz_A Uridine kinase; cytidin 99.2 1.6E-10 5.5E-15 96.3 12.3 30 86-115 2-31 (211)
95 3a8t_A Adenylate isopentenyltr 99.2 4.1E-11 1.4E-15 106.7 9.0 126 88-224 38-195 (339)
96 1m7g_A Adenylylsulfate kinase; 99.2 2E-11 7E-16 102.1 6.4 154 88-272 23-202 (211)
97 3fdi_A Uncharacterized protein 99.2 7.6E-10 2.6E-14 92.0 15.9 171 90-272 6-198 (201)
98 2iyv_A Shikimate kinase, SK; t 99.2 4.5E-11 1.5E-15 97.5 7.7 161 90-272 2-168 (184)
99 1zuh_A Shikimate kinase; alpha 99.2 1.3E-10 4.4E-15 93.4 10.1 66 201-270 96-167 (168)
100 3hdt_A Putative kinase; struct 99.2 1.3E-10 4.6E-15 98.2 9.8 97 172-272 108-218 (223)
101 2jeo_A Uridine-cytidine kinase 99.1 3E-10 1E-14 97.2 12.1 88 181-272 135-235 (245)
102 2ze6_A Isopentenyl transferase 99.1 7.1E-11 2.4E-15 101.8 8.0 124 91-225 2-140 (253)
103 2bdt_A BH3686; alpha-beta prot 99.1 2.5E-10 8.5E-15 93.5 10.7 26 90-115 2-27 (189)
104 1q3t_A Cytidylate kinase; nucl 99.1 8.7E-10 3E-14 93.7 14.5 91 177-272 132-234 (236)
105 2qt1_A Nicotinamide riboside k 99.1 1.1E-09 3.9E-14 91.0 14.3 175 86-272 17-205 (207)
106 1cke_A CK, MSSA, protein (cyti 99.1 3.8E-10 1.3E-14 94.9 11.2 90 179-273 122-223 (227)
107 3ake_A Cytidylate kinase; CMP 99.1 1.9E-09 6.6E-14 89.2 14.9 86 181-271 119-207 (208)
108 2bbw_A Adenylate kinase 4, AK4 99.1 2.6E-10 8.8E-15 97.6 9.5 176 89-282 26-244 (246)
109 1via_A Shikimate kinase; struc 99.1 9E-11 3.1E-15 95.1 5.8 69 203-274 94-168 (175)
110 1rz3_A Hypothetical protein rb 99.1 4.5E-11 1.5E-15 99.3 4.0 70 178-255 123-200 (201)
111 1zp6_A Hypothetical protein AT 99.1 7.1E-11 2.4E-15 96.8 5.1 166 86-275 5-178 (191)
112 3r20_A Cytidylate kinase; stru 99.1 2.1E-10 7.1E-15 97.5 8.0 88 181-273 129-228 (233)
113 2gks_A Bifunctional SAT/APS ki 99.1 1.1E-10 3.9E-15 111.0 6.2 162 89-272 371-540 (546)
114 2p5t_B PEZT; postsegregational 99.0 7.2E-10 2.5E-14 95.4 10.0 121 87-224 29-158 (253)
115 2h92_A Cytidylate kinase; ross 99.0 1.6E-09 5.6E-14 90.6 11.7 91 177-272 115-217 (219)
116 1p5z_B DCK, deoxycytidine kina 99.0 1.7E-10 5.7E-15 99.8 5.1 73 201-274 174-260 (263)
117 1x6v_B Bifunctional 3'-phospho 99.0 9.2E-10 3.2E-14 105.7 10.7 159 89-273 51-223 (630)
118 3c8u_A Fructokinase; YP_612366 99.0 1.1E-09 3.8E-14 91.2 8.6 69 181-253 125-206 (208)
119 2ocp_A DGK, deoxyguanosine kin 99.0 4.7E-10 1.6E-14 95.7 6.1 73 201-274 149-235 (241)
120 1sq5_A Pantothenate kinase; P- 99.0 4.4E-10 1.5E-14 99.6 6.0 29 87-115 77-105 (308)
121 4gp7_A Metallophosphoesterase; 98.9 3.2E-08 1.1E-12 79.9 14.6 149 85-262 4-162 (171)
122 3aez_A Pantothenate kinase; tr 98.9 3.5E-09 1.2E-13 93.9 9.2 29 87-115 87-115 (312)
123 3cr8_A Sulfate adenylyltranfer 98.9 3.6E-09 1.2E-13 100.7 8.1 165 87-273 366-540 (552)
124 1m8p_A Sulfate adenylyltransfe 98.8 6.7E-10 2.3E-14 106.3 2.4 161 88-274 394-568 (573)
125 2axn_A 6-phosphofructo-2-kinas 98.8 3.2E-08 1.1E-12 93.7 12.9 47 178-224 117-169 (520)
126 3exa_A TRNA delta(2)-isopenten 98.8 1.6E-09 5.5E-14 95.5 3.1 88 90-187 3-99 (322)
127 3eph_A TRNA isopentenyltransfe 98.8 3.7E-09 1.3E-13 96.2 3.9 88 90-187 2-98 (409)
128 3foz_A TRNA delta(2)-isopenten 98.7 2E-09 7E-14 94.6 1.9 92 88-189 8-108 (316)
129 1a7j_A Phosphoribulokinase; tr 98.7 7.9E-10 2.7E-14 97.1 -1.3 27 89-115 4-30 (290)
130 3tqc_A Pantothenate kinase; bi 98.6 2.1E-07 7.1E-12 82.7 10.5 28 88-115 90-117 (321)
131 3ch4_B Pmkase, phosphomevalona 98.6 2E-07 6.8E-12 77.0 9.3 88 182-277 105-194 (202)
132 3d3q_A TRNA delta(2)-isopenten 98.6 2.3E-07 7.8E-12 82.8 10.0 89 91-189 8-105 (340)
133 3crm_A TRNA delta(2)-isopenten 98.5 2.9E-08 9.8E-13 88.1 3.3 89 90-188 5-102 (323)
134 4g1u_C Hemin import ATP-bindin 98.5 9.6E-09 3.3E-13 89.1 -0.2 51 59-115 12-62 (266)
135 1b0u_A Histidine permease; ABC 98.5 8.6E-09 3E-13 89.2 -0.9 51 59-115 7-57 (262)
136 1htw_A HI0065; nucleotide-bind 98.5 8.1E-08 2.8E-12 76.7 4.7 49 61-115 10-58 (158)
137 2ihy_A ABC transporter, ATP-bi 98.5 9.4E-09 3.2E-13 89.7 -0.9 62 54-121 17-79 (279)
138 3tui_C Methionine import ATP-b 98.5 1.2E-08 4.1E-13 92.0 -0.4 33 83-115 47-79 (366)
139 1ji0_A ABC transporter; ATP bi 98.5 1.3E-08 4.4E-13 86.9 -0.7 36 85-120 27-63 (240)
140 3tif_A Uncharacterized ABC tra 98.5 5.7E-08 2E-12 82.6 2.9 33 83-115 24-56 (235)
141 3nh6_A ATP-binding cassette SU 98.4 5.2E-08 1.8E-12 86.0 2.4 34 82-115 72-105 (306)
142 3gfo_A Cobalt import ATP-bindi 98.4 1.4E-08 5E-13 88.3 -1.2 33 83-115 27-59 (275)
143 3rlf_A Maltose/maltodextrin im 98.4 4.9E-08 1.7E-12 88.6 1.9 55 61-121 6-61 (381)
144 3fvq_A Fe(3+) IONS import ATP- 98.4 2.3E-08 8E-13 90.0 -0.5 56 60-121 6-62 (359)
145 1g6h_A High-affinity branched- 98.4 2.1E-08 7.1E-13 86.5 -1.2 34 82-115 25-58 (257)
146 1v43_A Sugar-binding transport 98.4 1.6E-07 5.5E-12 85.1 4.2 57 59-121 12-69 (372)
147 2zu0_C Probable ATP-dependent 98.4 3.1E-08 1.1E-12 85.9 -0.7 54 54-113 16-69 (267)
148 2pcj_A ABC transporter, lipopr 98.4 1.3E-07 4.5E-12 79.8 2.6 33 83-115 23-55 (224)
149 3b5x_A Lipid A export ATP-bind 98.3 1.9E-07 6.4E-12 89.7 3.6 36 80-115 359-394 (582)
150 1z47_A CYSA, putative ABC-tran 98.3 5E-08 1.7E-12 87.8 -0.5 57 59-121 15-73 (355)
151 2ff7_A Alpha-hemolysin translo 98.3 1.3E-07 4.4E-12 81.0 2.0 33 83-115 28-60 (247)
152 1bif_A 6-phosphofructo-2-kinas 98.3 4.3E-06 1.5E-10 78.1 12.5 26 89-114 38-63 (469)
153 1mv5_A LMRA, multidrug resista 98.3 2.2E-07 7.6E-12 79.3 3.2 33 83-115 21-53 (243)
154 2ixe_A Antigen peptide transpo 98.3 1.9E-07 6.6E-12 81.0 2.9 32 84-115 39-70 (271)
155 1vpl_A ABC transporter, ATP-bi 98.3 4.5E-08 1.6E-12 84.3 -1.3 37 84-120 35-72 (256)
156 2yyz_A Sugar ABC transporter, 98.3 6.3E-08 2.1E-12 87.3 -0.7 37 85-121 24-61 (359)
157 2olj_A Amino acid ABC transpor 98.3 1.8E-07 6.1E-12 80.9 2.1 56 59-120 25-81 (263)
158 4f4c_A Multidrug resistance pr 98.3 1.7E-07 5.8E-12 97.7 2.3 87 80-178 1095-1192(1321)
159 2it1_A 362AA long hypothetical 98.3 7.1E-08 2.4E-12 87.1 -0.8 38 84-121 23-61 (362)
160 1g29_1 MALK, maltose transport 98.3 8.6E-08 2.9E-12 86.9 -0.8 36 85-120 24-60 (372)
161 1dek_A Deoxynucleoside monopho 98.3 3.1E-07 1.1E-11 78.2 2.8 66 203-271 169-239 (241)
162 1oxx_K GLCV, glucose, ABC tran 98.3 7.5E-08 2.6E-12 86.7 -1.2 35 86-120 27-62 (353)
163 2qi9_C Vitamin B12 import ATP- 98.3 2.6E-07 8.8E-12 79.2 2.1 30 86-115 22-51 (249)
164 2yz2_A Putative ABC transporte 98.2 3.2E-07 1.1E-11 79.4 2.3 32 84-115 27-58 (266)
165 2pze_A Cystic fibrosis transme 98.2 2.6E-07 8.8E-12 78.2 1.4 32 84-115 28-59 (229)
166 1sgw_A Putative ABC transporte 98.2 2.3E-07 7.8E-12 77.8 1.0 30 86-115 31-60 (214)
167 2cbz_A Multidrug resistance-as 98.2 4.5E-07 1.5E-11 77.1 2.1 32 84-115 25-56 (237)
168 2ghi_A Transport protein; mult 98.2 7.3E-07 2.5E-11 76.9 3.5 38 83-120 39-76 (260)
169 3czq_A Putative polyphosphate 98.2 3.2E-05 1.1E-09 67.6 13.8 151 89-272 85-275 (304)
170 3d31_A Sulfate/molybdate ABC t 98.2 3.5E-07 1.2E-11 82.1 1.3 37 84-120 20-57 (348)
171 2onk_A Molybdate/tungstate ABC 98.2 5.7E-07 2E-11 76.6 2.4 37 84-121 19-56 (240)
172 2nq2_C Hypothetical ABC transp 98.2 4E-07 1.4E-11 78.2 1.4 31 85-115 26-56 (253)
173 2yl4_A ATP-binding cassette SU 98.2 5.7E-07 1.9E-11 86.5 2.6 34 82-115 362-395 (595)
174 3b60_A Lipid A export ATP-bind 98.2 7.2E-07 2.5E-11 85.6 3.3 34 82-115 361-394 (582)
175 3gd7_A Fusion complex of cysti 98.2 3E-07 1E-11 83.8 0.4 38 83-120 40-77 (390)
176 3qf4_B Uncharacterized ABC tra 98.2 5.3E-07 1.8E-11 86.8 2.2 37 79-115 370-406 (598)
177 4f4c_A Multidrug resistance pr 98.1 3.8E-07 1.3E-11 95.1 0.8 86 81-178 435-529 (1321)
178 4a82_A Cystic fibrosis transme 98.1 7E-07 2.4E-11 85.6 2.4 34 82-115 359-392 (578)
179 1p6x_A Thymidine kinase; P-loo 98.1 8.5E-06 2.9E-10 72.6 8.9 28 88-115 5-32 (334)
180 2v9p_A Replication protein E1; 98.1 1.4E-06 4.8E-11 76.8 3.7 30 85-114 121-150 (305)
181 3qf4_A ABC transporter, ATP-bi 98.1 9.4E-07 3.2E-11 84.9 2.7 34 82-115 361-394 (587)
182 2d2e_A SUFC protein; ABC-ATPas 98.1 9.8E-07 3.4E-11 75.6 2.1 30 84-113 23-52 (250)
183 2bbs_A Cystic fibrosis transme 98.1 1.1E-06 3.8E-11 76.9 2.3 34 82-115 56-89 (290)
184 2gza_A Type IV secretion syste 98.1 2.7E-05 9.2E-10 70.2 11.4 39 87-125 172-211 (361)
185 2pjz_A Hypothetical protein ST 98.0 1.9E-06 6.6E-11 74.3 3.3 38 83-121 24-61 (263)
186 1e2k_A Thymidine kinase; trans 98.0 1.1E-05 3.9E-10 71.6 6.6 27 89-115 3-29 (331)
187 1g8f_A Sulfate adenylyltransfe 98.0 1.1E-05 3.6E-10 76.0 6.7 28 88-115 393-420 (511)
188 1of1_A Thymidine kinase; trans 97.9 8.9E-06 3.1E-10 73.4 5.7 28 88-115 47-74 (376)
189 3b9q_A Chloroplast SRP recepto 97.9 5.7E-06 2E-10 72.8 4.1 33 83-115 93-125 (302)
190 1ye8_A Protein THEP1, hypothet 97.9 5E-06 1.7E-10 67.4 3.1 25 91-115 1-25 (178)
191 3b85_A Phosphate starvation-in 97.9 4.8E-06 1.6E-10 69.3 3.1 26 88-113 20-45 (208)
192 3ozx_A RNAse L inhibitor; ATP 97.9 8E-06 2.7E-10 77.5 4.8 29 87-115 22-50 (538)
193 3g5u_A MCG1178, multidrug resi 97.9 4.8E-06 1.6E-10 86.7 3.4 35 81-115 407-441 (1284)
194 1yqt_A RNAse L inhibitor; ATP- 97.9 1.1E-05 3.7E-10 76.6 5.3 30 86-115 43-72 (538)
195 2eyu_A Twitching motility prot 97.9 6.5E-06 2.2E-10 70.9 3.4 28 88-115 23-50 (261)
196 3g5u_A MCG1178, multidrug resi 97.9 9.7E-06 3.3E-10 84.4 5.3 37 79-115 1048-1084(1284)
197 2ehv_A Hypothetical protein PH 97.8 6.2E-06 2.1E-10 69.6 2.9 25 87-111 27-51 (251)
198 4a74_A DNA repair and recombin 97.8 6.6E-06 2.3E-10 68.6 2.9 27 87-113 22-48 (231)
199 1osn_A Thymidine kinase, VZV-T 97.8 1.3E-05 4.3E-10 71.6 4.7 31 87-117 9-40 (341)
200 2yhs_A FTSY, cell division pro 97.8 1.1E-05 3.8E-10 75.2 4.5 35 81-115 284-318 (503)
201 2og2_A Putative signal recogni 97.8 1E-05 3.5E-10 72.8 4.1 34 82-115 149-182 (359)
202 3ozx_A RNAse L inhibitor; ATP 97.8 6.1E-06 2.1E-10 78.3 2.7 30 86-115 290-319 (538)
203 3j16_B RLI1P; ribosome recycli 97.8 1.4E-05 4.7E-10 76.9 5.0 30 86-115 99-128 (608)
204 3ec2_A DNA replication protein 97.8 7.7E-06 2.6E-10 65.9 2.7 27 88-114 36-62 (180)
205 2i3b_A HCR-ntpase, human cance 97.8 8.5E-06 2.9E-10 66.7 3.0 25 90-114 1-25 (189)
206 1yqt_A RNAse L inhibitor; ATP- 97.8 8.5E-06 2.9E-10 77.4 3.3 30 86-115 308-337 (538)
207 2qm8_A GTPase/ATPase; G protei 97.8 1.5E-05 5.1E-10 71.2 4.7 47 62-114 33-79 (337)
208 2npi_A Protein CLP1; CLP1-PCF1 97.8 1E-05 3.5E-10 75.2 3.6 29 87-115 135-163 (460)
209 3bk7_A ABC transporter ATP-bin 97.8 9.6E-06 3.3E-10 78.0 3.3 30 86-115 378-407 (607)
210 3bk7_A ABC transporter ATP-bin 97.8 1.9E-05 6.5E-10 76.0 5.0 30 86-115 113-142 (607)
211 1rj9_A FTSY, signal recognitio 97.7 1.6E-05 5.3E-10 70.1 3.5 27 89-115 101-127 (304)
212 1lw7_A Transcriptional regulat 97.7 1.5E-05 5.3E-10 71.8 3.3 33 83-115 161-195 (365)
213 3e70_C DPA, signal recognition 97.7 1.9E-05 6.4E-10 70.3 3.8 28 88-115 127-154 (328)
214 1odf_A YGR205W, hypothetical 3 97.7 2.3E-05 7.9E-10 68.5 3.9 28 88-115 29-56 (290)
215 3czp_A Putative polyphosphate 97.7 0.001 3.5E-08 62.2 15.2 154 88-275 41-238 (500)
216 3euj_A Chromosome partition pr 97.7 2.1E-05 7.3E-10 73.4 3.5 29 86-115 26-54 (483)
217 2dpy_A FLII, flagellum-specifi 97.7 4.1E-05 1.4E-09 70.7 5.4 39 86-124 153-192 (438)
218 2obl_A ESCN; ATPase, hydrolase 97.6 3.7E-05 1.3E-09 68.9 4.6 30 86-115 67-96 (347)
219 2x8a_A Nuclear valosin-contain 97.6 3.2E-05 1.1E-09 67.0 3.8 28 86-115 42-69 (274)
220 2qag_B Septin-6, protein NEDD5 97.6 2.2E-05 7.7E-10 72.0 2.7 28 86-113 36-65 (427)
221 2kjq_A DNAA-related protein; s 97.6 2.7E-05 9.3E-10 61.1 2.7 26 89-114 35-60 (149)
222 1ixz_A ATP-dependent metallopr 97.6 6.1E-05 2.1E-09 64.0 4.8 27 87-115 48-74 (254)
223 2pt7_A CAG-ALFA; ATPase, prote 97.6 3.2E-05 1.1E-09 68.9 3.0 29 87-115 168-196 (330)
224 2ewv_A Twitching motility prot 97.5 4.5E-05 1.5E-09 69.1 3.7 29 87-115 133-161 (372)
225 3sop_A Neuronal-specific septi 97.5 4E-05 1.4E-09 66.3 3.1 23 92-114 4-26 (270)
226 3j16_B RLI1P; ribosome recycli 97.5 6.1E-05 2.1E-09 72.4 4.6 28 88-115 376-403 (608)
227 1svm_A Large T antigen; AAA+ f 97.5 4.7E-05 1.6E-09 69.0 3.5 30 86-115 165-194 (377)
228 1iy2_A ATP-dependent metallopr 97.5 8.5E-05 2.9E-09 64.1 4.9 28 86-115 71-98 (278)
229 2w0m_A SSO2452; RECA, SSPF, un 97.5 4.6E-05 1.6E-09 63.3 3.0 28 87-114 20-47 (235)
230 3kta_A Chromosome segregation 97.5 4.9E-05 1.7E-09 61.1 2.9 27 88-115 25-51 (182)
231 3jvv_A Twitching mobility prot 97.5 6E-05 2E-09 67.8 3.7 28 88-115 121-148 (356)
232 1cr0_A DNA primase/helicase; R 97.5 6.6E-05 2.3E-09 65.4 3.8 28 87-114 32-59 (296)
233 2yv5_A YJEQ protein; hydrolase 97.5 8.8E-05 3E-09 65.1 4.7 27 88-115 163-189 (302)
234 1u0l_A Probable GTPase ENGC; p 97.5 6.2E-05 2.1E-09 66.1 3.6 28 88-115 167-194 (301)
235 2f1r_A Molybdopterin-guanine d 97.5 2.7E-05 9.3E-10 62.7 1.1 25 91-115 3-27 (171)
236 2iw3_A Elongation factor 3A; a 97.5 1.6E-05 5.6E-10 79.9 -0.3 33 83-115 692-724 (986)
237 1vma_A Cell division protein F 97.4 0.00018 6.3E-09 63.2 6.2 29 86-114 100-128 (306)
238 2cvh_A DNA repair and recombin 97.4 8.6E-05 2.9E-09 61.3 3.8 26 87-112 17-42 (220)
239 1tq4_A IIGP1, interferon-induc 97.4 0.00011 3.7E-09 67.4 4.6 26 90-115 69-94 (413)
240 2rcn_A Probable GTPase ENGC; Y 97.4 9.3E-05 3.2E-09 66.5 3.7 26 89-114 214-239 (358)
241 1p9r_A General secretion pathw 97.4 9.2E-05 3.1E-09 68.0 3.7 28 88-115 165-192 (418)
242 1n0w_A DNA repair protein RAD5 97.4 7.7E-05 2.6E-09 62.6 3.0 27 87-113 21-47 (243)
243 2iw3_A Elongation factor 3A; a 97.4 5.2E-05 1.8E-09 76.3 2.2 30 83-112 454-483 (986)
244 1pui_A ENGB, probable GTP-bind 97.4 5.6E-05 1.9E-09 62.0 1.8 30 85-114 21-50 (210)
245 1np6_A Molybdopterin-guanine d 97.3 0.00011 3.7E-09 59.3 2.9 25 90-114 6-30 (174)
246 3czp_A Putative polyphosphate 97.3 0.0012 4.1E-08 61.8 10.3 28 88-115 298-325 (500)
247 2oap_1 GSPE-2, type II secreti 97.3 0.00011 3.9E-09 69.1 3.3 34 88-121 258-292 (511)
248 1t9h_A YLOQ, probable GTPase E 97.3 3.2E-05 1.1E-09 68.1 -0.5 29 86-114 169-197 (307)
249 1xjc_A MOBB protein homolog; s 97.3 0.00012 4.1E-09 58.7 2.8 25 90-114 4-28 (169)
250 3ux8_A Excinuclease ABC, A sub 97.3 4.6E-05 1.6E-09 74.2 0.3 29 82-110 340-368 (670)
251 1nij_A Hypothetical protein YJ 97.3 0.00024 8.1E-09 62.8 4.9 25 90-114 4-28 (318)
252 3ux8_A Excinuclease ABC, A sub 97.3 7.2E-05 2.5E-09 72.9 1.6 27 81-107 35-61 (670)
253 2px0_A Flagellar biosynthesis 97.2 0.00015 5E-09 63.6 3.3 27 88-114 103-129 (296)
254 1zu4_A FTSY; GTPase, signal re 97.2 0.00024 8.2E-09 62.9 4.5 33 82-114 97-129 (320)
255 1tf7_A KAIC; homohexamer, hexa 97.2 0.00015 5.2E-09 68.5 3.2 28 87-114 36-65 (525)
256 2qmh_A HPR kinase/phosphorylas 97.2 0.00031 1.1E-08 57.7 4.5 26 89-114 33-58 (205)
257 1in4_A RUVB, holliday junction 97.2 0.00017 5.7E-09 64.2 3.2 26 90-115 51-76 (334)
258 1nlf_A Regulatory protein REPA 97.2 0.00018 6.3E-09 62.1 3.2 28 87-114 27-54 (279)
259 3rhf_A Putative polyphosphate 97.2 0.011 3.6E-07 51.1 14.1 27 89-115 74-100 (289)
260 4aby_A DNA repair protein RECN 97.1 7E-05 2.4E-09 68.4 -0.1 28 87-115 58-85 (415)
261 1pzn_A RAD51, DNA repair and r 97.1 0.0002 6.9E-09 64.1 2.8 29 86-114 127-155 (349)
262 1wb9_A DNA mismatch repair pro 97.1 0.00027 9.2E-09 70.0 3.4 26 88-113 605-630 (800)
263 3thx_B DNA mismatch repair pro 97.1 0.00018 6.3E-09 72.0 2.3 29 84-112 667-695 (918)
264 3cf0_A Transitional endoplasmi 97.0 0.0004 1.4E-08 60.7 4.1 28 88-115 47-74 (301)
265 1ls1_A Signal recognition part 97.0 0.00078 2.7E-08 58.8 5.9 27 89-115 97-123 (295)
266 1oix_A RAS-related protein RAB 97.0 0.00034 1.2E-08 56.6 3.3 24 91-114 30-53 (191)
267 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00045 1.5E-08 54.0 3.7 23 90-112 23-45 (149)
268 1qhl_A Protein (cell division 97.0 5.4E-05 1.9E-09 63.7 -1.8 25 91-115 28-52 (227)
269 3m6a_A ATP-dependent protease 97.0 0.00058 2E-08 64.8 5.0 27 89-115 107-133 (543)
270 2p67_A LAO/AO transport system 97.0 0.00053 1.8E-08 61.1 4.4 28 87-114 53-80 (341)
271 3t15_A Ribulose bisphosphate c 97.0 0.00059 2E-08 59.5 4.6 29 87-115 33-61 (293)
272 1lv7_A FTSH; alpha/beta domain 97.0 0.00045 1.5E-08 58.7 3.8 25 91-115 46-70 (257)
273 2f9l_A RAB11B, member RAS onco 97.0 0.0004 1.4E-08 56.5 3.3 23 91-113 6-28 (199)
274 3thx_A DNA mismatch repair pro 97.0 0.0003 1E-08 70.7 2.8 24 87-110 659-682 (934)
275 1jbk_A CLPB protein; beta barr 96.9 0.00049 1.7E-08 54.7 3.5 25 90-114 43-67 (195)
276 2qnr_A Septin-2, protein NEDD5 96.9 0.00031 1.1E-08 61.6 2.4 21 93-113 21-41 (301)
277 3qf7_A RAD50; ABC-ATPase, ATPa 96.9 0.00033 1.1E-08 63.1 2.5 24 88-112 22-45 (365)
278 2dr3_A UPF0273 protein PH0284; 96.9 0.00044 1.5E-08 57.9 3.1 26 87-112 20-45 (247)
279 1ewq_A DNA mismatch repair pro 96.9 0.00047 1.6E-08 67.9 3.6 24 90-113 576-599 (765)
280 2www_A Methylmalonic aciduria 96.9 0.00061 2.1E-08 61.0 4.0 26 89-114 73-98 (349)
281 3bos_A Putative DNA replicatio 96.9 0.00056 1.9E-08 56.8 3.5 25 90-114 52-76 (242)
282 3b9p_A CG5977-PA, isoform A; A 96.9 0.00097 3.3E-08 57.7 5.1 26 90-115 54-79 (297)
283 2gj8_A MNME, tRNA modification 96.9 0.00063 2.1E-08 54.0 3.5 25 89-113 3-27 (172)
284 3tqf_A HPR(Ser) kinase; transf 96.8 0.0011 3.7E-08 53.2 4.6 24 90-113 16-39 (181)
285 3h4m_A Proteasome-activating n 96.8 0.0012 4.1E-08 56.8 5.3 26 90-115 51-76 (285)
286 2ga8_A Hypothetical 39.9 kDa p 96.8 0.00056 1.9E-08 61.2 3.2 56 181-237 261-328 (359)
287 1ni3_A YCHF GTPase, YCHF GTP-b 96.8 0.00071 2.4E-08 61.5 3.8 26 87-112 17-42 (392)
288 3lda_A DNA repair protein RAD5 96.8 0.00048 1.6E-08 62.8 2.7 25 87-111 175-199 (400)
289 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0012 4E-08 55.9 5.0 27 89-115 38-64 (262)
290 2o5v_A DNA replication and rep 96.8 0.00046 1.6E-08 62.1 2.5 25 87-112 24-48 (359)
291 2p65_A Hypothetical protein PF 96.8 0.00056 1.9E-08 54.3 2.8 25 90-114 43-67 (187)
292 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0023 7.7E-08 60.0 7.2 29 85-115 61-89 (499)
293 1w1w_A Structural maintenance 96.8 0.0008 2.7E-08 61.8 4.1 28 88-115 24-51 (430)
294 1ypw_A Transitional endoplasmi 96.8 0.0013 4.3E-08 65.4 5.4 29 87-115 235-263 (806)
295 4b4t_J 26S protease regulatory 96.7 0.0014 4.7E-08 59.7 5.1 27 87-115 181-207 (405)
296 1e69_A Chromosome segregation 96.7 0.00053 1.8E-08 60.6 2.3 26 88-114 23-48 (322)
297 1j8m_F SRP54, signal recogniti 96.7 0.0018 6.2E-08 56.6 5.6 30 84-114 93-122 (297)
298 2wji_A Ferrous iron transport 96.7 0.00085 2.9E-08 52.7 3.2 23 91-113 4-26 (165)
299 2w58_A DNAI, primosome compone 96.7 0.00098 3.4E-08 54.3 3.7 24 91-114 55-78 (202)
300 1sxj_C Activator 1 40 kDa subu 96.7 0.0008 2.7E-08 59.7 3.0 22 93-114 49-70 (340)
301 3szr_A Interferon-induced GTP- 96.6 0.0006 2.1E-08 65.6 2.2 22 93-114 48-69 (608)
302 2ygr_A Uvrabc system protein A 96.6 0.00033 1.1E-08 70.3 0.2 28 83-110 661-688 (993)
303 1njg_A DNA polymerase III subu 96.6 0.0011 3.6E-08 54.7 3.3 25 90-114 45-69 (250)
304 3n70_A Transport activator; si 96.6 0.0013 4.3E-08 50.9 3.5 25 90-114 24-48 (145)
305 2o8b_B DNA mismatch repair pro 96.6 0.00093 3.2E-08 67.9 3.4 23 90-113 789-811 (1022)
306 2ffh_A Protein (FFH); SRP54, s 96.6 0.0026 8.9E-08 58.4 6.1 27 89-115 97-123 (425)
307 1tf7_A KAIC; homohexamer, hexa 96.6 0.00081 2.8E-08 63.5 2.8 28 87-114 278-305 (525)
308 2zej_A Dardarin, leucine-rich 96.6 0.00089 3E-08 53.6 2.6 22 92-113 4-25 (184)
309 3qks_A DNA double-strand break 96.6 0.0013 4.5E-08 54.1 3.7 24 90-113 23-46 (203)
310 4b4t_K 26S protease regulatory 96.6 0.002 6.8E-08 59.2 5.1 26 90-115 206-231 (428)
311 4b4t_M 26S protease regulatory 96.6 0.002 6.9E-08 59.2 5.1 26 90-115 215-240 (434)
312 2vf7_A UVRA2, excinuclease ABC 96.6 0.00025 8.6E-09 70.4 -1.0 27 85-111 518-545 (842)
313 2qag_C Septin-7; cell cycle, c 96.6 0.00097 3.3E-08 61.1 2.9 22 93-114 34-55 (418)
314 4fcw_A Chaperone protein CLPB; 96.6 0.0013 4.4E-08 57.2 3.6 25 90-114 47-71 (311)
315 1ega_A Protein (GTP-binding pr 96.6 0.0012 4E-08 57.8 3.3 25 89-113 7-31 (301)
316 3kl4_A SRP54, signal recogniti 96.5 0.0011 3.7E-08 61.0 3.1 27 88-114 95-121 (433)
317 1mky_A Probable GTP-binding pr 96.5 0.0018 6.2E-08 59.6 4.6 25 90-114 180-204 (439)
318 4b4t_L 26S protease subunit RP 96.5 0.0022 7.4E-08 59.1 5.1 26 90-115 215-240 (437)
319 2r6f_A Excinuclease ABC subuni 96.5 0.0003 1E-08 70.4 -0.8 29 82-110 642-670 (972)
320 2wjg_A FEOB, ferrous iron tran 96.5 0.0014 4.8E-08 52.3 3.3 24 90-113 7-30 (188)
321 3hr8_A Protein RECA; alpha and 96.5 0.0011 3.9E-08 59.4 3.0 27 87-113 58-84 (356)
322 2r8r_A Sensor protein; KDPD, P 96.5 0.019 6.5E-07 48.0 10.2 54 168-222 105-175 (228)
323 3hws_A ATP-dependent CLP prote 96.5 0.0021 7.2E-08 57.5 4.7 26 90-115 51-76 (363)
324 3syl_A Protein CBBX; photosynt 96.5 0.0014 4.8E-08 56.9 3.4 26 89-114 66-91 (309)
325 3qkt_A DNA double-strand break 96.5 0.0016 5.5E-08 57.9 3.7 22 90-111 23-44 (339)
326 3k1j_A LON protease, ATP-depen 96.5 0.0014 4.8E-08 62.9 3.6 28 88-115 58-85 (604)
327 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0018 6.3E-08 57.1 4.0 25 90-114 45-69 (322)
328 1udx_A The GTP-binding protein 96.5 0.00062 2.1E-08 62.4 0.9 28 87-114 154-181 (416)
329 2orw_A Thymidine kinase; TMTK, 96.5 0.0016 5.6E-08 52.7 3.3 23 90-112 3-25 (184)
330 1l8q_A Chromosomal replication 96.4 0.0013 4.5E-08 57.7 2.9 25 90-114 37-61 (324)
331 1ofh_A ATP-dependent HSL prote 96.4 0.0025 8.5E-08 55.1 4.5 26 90-115 50-75 (310)
332 3eie_A Vacuolar protein sortin 96.4 0.0029 1E-07 55.6 4.8 26 90-115 51-76 (322)
333 1d2n_A N-ethylmaleimide-sensit 96.4 0.0019 6.6E-08 55.2 3.5 26 90-115 64-89 (272)
334 2qby_A CDC6 homolog 1, cell di 96.4 0.0018 6.1E-08 57.6 3.3 26 89-114 44-69 (386)
335 1sxj_E Activator 1 40 kDa subu 96.4 0.0015 5.1E-08 57.9 2.7 21 93-113 39-59 (354)
336 3uk6_A RUVB-like 2; hexameric 96.3 0.0019 6.6E-08 57.5 3.2 26 90-115 70-95 (368)
337 4b4t_H 26S protease regulatory 96.3 0.0031 1E-07 58.3 4.6 26 90-115 243-268 (467)
338 1um8_A ATP-dependent CLP prote 96.3 0.0033 1.1E-07 56.4 4.8 26 90-115 72-97 (376)
339 2chg_A Replication factor C sm 96.3 0.0019 6.4E-08 52.6 2.9 22 93-114 41-62 (226)
340 1g41_A Heat shock protein HSLU 96.3 0.0031 1.1E-07 58.1 4.7 26 91-116 51-76 (444)
341 3clv_A RAB5 protein, putative; 96.3 0.0033 1.1E-07 50.3 4.4 26 88-113 5-30 (208)
342 1tue_A Replication protein E1; 96.3 0.0021 7.1E-08 53.1 3.0 28 88-115 56-83 (212)
343 2r62_A Cell division protease 96.3 0.0011 3.8E-08 56.4 1.3 23 93-115 47-69 (268)
344 3d8b_A Fidgetin-like protein 1 96.2 0.0041 1.4E-07 55.6 5.0 27 89-115 116-142 (357)
345 1z2a_A RAS-related protein RAB 96.2 0.0026 8.8E-08 49.4 3.3 23 91-113 6-28 (168)
346 4b4t_I 26S protease regulatory 96.2 0.004 1.4E-07 57.0 4.9 26 90-115 216-241 (437)
347 1fnn_A CDC6P, cell division co 96.2 0.0024 8.4E-08 57.0 3.4 24 92-115 46-69 (389)
348 2lkc_A Translation initiation 96.2 0.0033 1.1E-07 49.4 3.8 26 88-113 6-31 (178)
349 2dyk_A GTP-binding protein; GT 96.2 0.0027 9.2E-08 49.0 3.2 22 92-113 3-24 (161)
350 2zr9_A Protein RECA, recombina 96.2 0.0022 7.6E-08 57.3 3.1 27 87-113 58-84 (349)
351 2ged_A SR-beta, signal recogni 96.2 0.0035 1.2E-07 50.2 3.9 24 90-113 48-71 (193)
352 1v5w_A DMC1, meiotic recombina 96.2 0.0029 9.8E-08 56.4 3.7 27 87-113 119-145 (343)
353 1svi_A GTP-binding protein YSX 96.2 0.0035 1.2E-07 50.2 3.9 24 90-113 23-46 (195)
354 3pih_A Uvrabc system protein A 96.2 0.0012 4.1E-08 66.2 1.3 26 82-107 602-627 (916)
355 1ko7_A HPR kinase/phosphatase; 96.2 0.0042 1.5E-07 54.6 4.6 25 89-113 143-167 (314)
356 2ce7_A Cell division protein F 96.2 0.0048 1.7E-07 57.4 5.3 23 93-115 52-74 (476)
357 1kao_A RAP2A; GTP-binding prot 96.2 0.0029 9.8E-08 48.9 3.2 23 91-113 4-26 (167)
358 3ice_A Transcription terminati 96.2 0.0034 1.2E-07 56.8 4.1 28 86-113 170-197 (422)
359 2ce2_X GTPase HRAS; signaling 96.2 0.0027 9.3E-08 48.9 3.1 22 92-113 5-26 (166)
360 3lxx_A GTPase IMAP family memb 96.2 0.0027 9.2E-08 53.2 3.1 24 90-113 29-52 (239)
361 2iwr_A Centaurin gamma 1; ANK 96.1 0.0032 1.1E-07 49.6 3.4 24 90-113 7-30 (178)
362 1u8z_A RAS-related protein RAL 96.1 0.0031 1.1E-07 48.8 3.3 23 91-113 5-27 (168)
363 3pfi_A Holliday junction ATP-d 96.1 0.0045 1.5E-07 54.5 4.6 25 91-115 56-80 (338)
364 3dm5_A SRP54, signal recogniti 96.1 0.0029 1E-07 58.2 3.4 26 89-114 99-124 (443)
365 2wsm_A Hydrogenase expression/ 96.1 0.0037 1.3E-07 51.4 3.7 25 90-114 30-54 (221)
366 3co5_A Putative two-component 96.1 0.0014 4.9E-08 50.5 1.2 23 92-114 29-51 (143)
367 1c9k_A COBU, adenosylcobinamid 96.1 0.0025 8.7E-08 51.4 2.6 22 92-113 1-22 (180)
368 2qp9_X Vacuolar protein sortin 96.1 0.0045 1.5E-07 55.3 4.6 25 91-115 85-109 (355)
369 2nzj_A GTP-binding protein REM 96.1 0.0029 9.9E-08 49.5 3.0 23 91-113 5-27 (175)
370 3bwd_D RAC-like GTP-binding pr 96.1 0.0042 1.4E-07 49.0 3.8 25 89-113 7-31 (182)
371 2erx_A GTP-binding protein DI- 96.1 0.0032 1.1E-07 49.0 3.1 23 91-113 4-26 (172)
372 2vf7_A UVRA2, excinuclease ABC 96.1 0.0013 4.6E-08 65.2 1.0 21 87-107 33-53 (842)
373 1ek0_A Protein (GTP-binding pr 96.1 0.0035 1.2E-07 48.7 3.3 22 92-113 5-26 (170)
374 1z08_A RAS-related protein RAB 96.1 0.0035 1.2E-07 48.8 3.3 23 91-113 7-29 (170)
375 2b8t_A Thymidine kinase; deoxy 96.1 0.0038 1.3E-07 52.2 3.6 27 88-114 10-36 (223)
376 1ky3_A GTP-binding protein YPT 96.1 0.0034 1.2E-07 49.4 3.2 23 91-113 9-31 (182)
377 1upt_A ARL1, ADP-ribosylation 96.1 0.0052 1.8E-07 47.8 4.3 26 88-113 5-30 (171)
378 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0035 1.2E-07 49.2 3.2 23 91-113 8-30 (177)
379 1c1y_A RAS-related protein RAP 96.1 0.0036 1.2E-07 48.5 3.3 22 92-113 5-26 (167)
380 1g16_A RAS-related protein SEC 96.1 0.0034 1.2E-07 48.8 3.1 22 92-113 5-26 (170)
381 3q85_A GTP-binding protein REM 96.1 0.0033 1.1E-07 49.0 3.0 22 92-113 4-25 (169)
382 1z0j_A RAB-22, RAS-related pro 96.1 0.0036 1.2E-07 48.6 3.2 23 91-113 7-29 (170)
383 2v1u_A Cell division control p 96.0 0.0034 1.1E-07 55.9 3.4 26 89-114 43-68 (387)
384 3q72_A GTP-binding protein RAD 96.0 0.0033 1.1E-07 48.8 2.8 22 92-113 4-25 (166)
385 3pqc_A Probable GTP-binding pr 96.0 0.0053 1.8E-07 48.9 4.1 23 91-113 24-46 (195)
386 2fn4_A P23, RAS-related protei 96.0 0.0036 1.2E-07 49.2 3.1 24 90-113 9-32 (181)
387 1sxj_D Activator 1 41 kDa subu 96.0 0.0032 1.1E-07 55.6 2.9 22 93-114 61-82 (353)
388 3k53_A Ferrous iron transport 96.0 0.0034 1.2E-07 53.8 2.9 23 91-113 4-26 (271)
389 1r2q_A RAS-related protein RAB 96.0 0.0043 1.5E-07 48.1 3.3 22 91-112 7-28 (170)
390 2gf0_A GTP-binding protein DI- 96.0 0.0051 1.7E-07 49.3 3.8 23 90-112 8-30 (199)
391 2bjv_A PSP operon transcriptio 95.9 0.0046 1.6E-07 52.5 3.7 25 91-115 30-54 (265)
392 3bc1_A RAS-related protein RAB 95.9 0.0043 1.5E-07 49.3 3.3 23 91-113 12-34 (195)
393 1knx_A Probable HPR(Ser) kinas 95.9 0.007 2.4E-07 53.1 4.8 33 89-123 146-178 (312)
394 1fzq_A ADP-ribosylation factor 95.9 0.0051 1.7E-07 49.0 3.7 25 89-113 15-39 (181)
395 3pih_A Uvrabc system protein A 95.9 0.002 7E-08 64.5 1.5 23 85-107 19-41 (916)
396 2hf9_A Probable hydrogenase ni 95.9 0.0052 1.8E-07 50.6 3.8 24 90-113 38-61 (226)
397 2z4s_A Chromosomal replication 95.9 0.0033 1.1E-07 57.9 2.8 25 90-114 130-154 (440)
398 2oil_A CATX-8, RAS-related pro 95.9 0.0045 1.5E-07 49.6 3.3 23 91-113 26-48 (193)
399 3oes_A GTPase rhebl1; small GT 95.9 0.0044 1.5E-07 50.1 3.2 24 90-113 24-47 (201)
400 4dsu_A GTPase KRAS, isoform 2B 95.9 0.0045 1.5E-07 49.1 3.2 23 91-113 5-27 (189)
401 4ad8_A DNA repair protein RECN 95.9 0.0013 4.5E-08 61.9 0.0 26 88-114 59-84 (517)
402 3cf2_A TER ATPase, transitiona 95.9 0.0084 2.9E-07 59.2 5.7 28 88-115 236-263 (806)
403 2c9o_A RUVB-like 1; hexameric 95.9 0.0043 1.5E-07 57.4 3.5 26 90-115 63-88 (456)
404 2atv_A RERG, RAS-like estrogen 95.9 0.0057 2E-07 49.2 3.9 24 90-113 28-51 (196)
405 1r8s_A ADP-ribosylation factor 95.9 0.0047 1.6E-07 47.8 3.3 20 93-112 3-22 (164)
406 3vfd_A Spastin; ATPase, microt 95.9 0.0076 2.6E-07 54.4 5.1 26 90-115 148-173 (389)
407 2hxs_A RAB-26, RAS-related pro 95.9 0.0046 1.6E-07 48.5 3.2 23 91-113 7-29 (178)
408 3con_A GTPase NRAS; structural 95.9 0.0047 1.6E-07 49.3 3.3 23 91-113 22-44 (190)
409 3tw8_B RAS-related protein RAB 95.9 0.0043 1.5E-07 48.7 3.0 23 91-113 10-32 (181)
410 3pvs_A Replication-associated 95.9 0.0042 1.4E-07 57.4 3.3 25 91-115 51-75 (447)
411 3upu_A ATP-dependent DNA helic 95.9 0.0099 3.4E-07 55.0 5.8 23 92-114 47-69 (459)
412 2qby_B CDC6 homolog 3, cell di 95.9 0.0051 1.7E-07 54.9 3.8 25 90-114 45-69 (384)
413 3t1o_A Gliding protein MGLA; G 95.9 0.0053 1.8E-07 49.0 3.5 25 91-115 15-39 (198)
414 2zts_A Putative uncharacterize 95.9 0.0047 1.6E-07 51.6 3.3 25 87-111 27-51 (251)
415 2z43_A DNA repair and recombin 95.9 0.0042 1.4E-07 54.8 3.1 27 87-113 104-130 (324)
416 1sxj_A Activator 1 95 kDa subu 95.9 0.0052 1.8E-07 57.8 3.9 26 90-115 77-102 (516)
417 2cxx_A Probable GTP-binding pr 95.9 0.0041 1.4E-07 49.4 2.8 22 92-113 3-24 (190)
418 1m2o_B GTP-binding protein SAR 95.9 0.0046 1.6E-07 49.7 3.1 23 91-113 24-46 (190)
419 2y8e_A RAB-protein 6, GH09086P 95.9 0.0046 1.6E-07 48.4 3.1 23 91-113 15-37 (179)
420 2zan_A Vacuolar protein sortin 95.9 0.0053 1.8E-07 56.7 3.9 25 90-114 167-191 (444)
421 3ihw_A Centg3; RAS, centaurin, 95.8 0.005 1.7E-07 49.2 3.3 23 91-113 21-43 (184)
422 1z0f_A RAB14, member RAS oncog 95.8 0.0051 1.7E-07 48.2 3.3 23 91-113 16-38 (179)
423 3t5g_A GTP-binding protein RHE 95.8 0.004 1.4E-07 49.2 2.6 23 90-112 6-28 (181)
424 1nrj_B SR-beta, signal recogni 95.8 0.0065 2.2E-07 49.7 4.0 24 90-113 12-35 (218)
425 2a9k_A RAS-related protein RAL 95.8 0.0051 1.8E-07 48.6 3.3 23 91-113 19-41 (187)
426 2r6a_A DNAB helicase, replicat 95.8 0.0054 1.9E-07 56.7 3.8 28 87-114 200-227 (454)
427 2g6b_A RAS-related protein RAB 95.8 0.0053 1.8E-07 48.3 3.3 23 91-113 11-33 (180)
428 3bh0_A DNAB-like replicative h 95.8 0.0055 1.9E-07 53.8 3.7 27 87-113 65-91 (315)
429 1xx6_A Thymidine kinase; NESG, 95.8 0.0061 2.1E-07 49.6 3.7 27 88-114 6-32 (191)
430 2vhj_A Ntpase P4, P4; non- hyd 95.8 0.0043 1.5E-07 54.7 2.9 27 87-113 120-146 (331)
431 3p32_A Probable GTPase RV1496/ 95.8 0.0054 1.9E-07 54.8 3.6 27 88-114 77-103 (355)
432 2qgz_A Helicase loader, putati 95.8 0.006 2E-07 53.5 3.8 25 90-114 152-176 (308)
433 1m7b_A RND3/RHOE small GTP-bin 95.8 0.0051 1.7E-07 49.0 3.1 23 91-113 8-30 (184)
434 2efe_B Small GTP-binding prote 95.8 0.0056 1.9E-07 48.2 3.3 23 91-113 13-35 (181)
435 2ygr_A Uvrabc system protein A 95.8 0.0021 7.2E-08 64.6 0.8 22 86-107 42-63 (993)
436 1g8p_A Magnesium-chelatase 38 95.8 0.0034 1.2E-07 55.4 2.1 23 93-115 48-70 (350)
437 2bme_A RAB4A, RAS-related prot 95.8 0.0053 1.8E-07 48.7 3.1 23 91-113 11-33 (186)
438 1moz_A ARL1, ADP-ribosylation 95.8 0.0048 1.7E-07 48.7 2.8 24 89-112 17-40 (183)
439 2r6f_A Excinuclease ABC subuni 95.8 0.0022 7.4E-08 64.3 0.9 22 86-107 40-61 (972)
440 2v3c_C SRP54, signal recogniti 95.8 0.0037 1.3E-07 57.5 2.4 26 89-114 98-123 (432)
441 1hqc_A RUVB; extended AAA-ATPa 95.7 0.0037 1.3E-07 54.5 2.3 25 91-115 39-63 (324)
442 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0059 2E-07 48.2 3.3 23 91-113 6-28 (186)
443 2bov_A RAla, RAS-related prote 95.7 0.0059 2E-07 49.2 3.3 23 91-113 15-37 (206)
444 3kkq_A RAS-related protein M-R 95.7 0.0061 2.1E-07 48.2 3.3 23 91-113 19-41 (183)
445 2gf9_A RAS-related protein RAB 95.7 0.0061 2.1E-07 48.6 3.3 23 91-113 23-45 (189)
446 1f6b_A SAR1; gtpases, N-termin 95.7 0.0062 2.1E-07 49.3 3.3 22 91-112 26-47 (198)
447 3auy_A DNA double-strand break 95.7 0.0066 2.2E-07 54.6 3.7 23 90-112 25-47 (371)
448 2p5s_A RAS and EF-hand domain 95.7 0.0077 2.6E-07 48.6 3.8 24 90-113 28-51 (199)
449 2r44_A Uncharacterized protein 95.7 0.0037 1.3E-07 55.0 2.0 25 91-115 47-71 (331)
450 1vg8_A RAS-related protein RAB 95.7 0.0063 2.2E-07 49.1 3.2 24 90-113 8-31 (207)
451 2qtf_A Protein HFLX, GTP-bindi 95.7 0.0056 1.9E-07 55.0 3.1 22 92-113 181-202 (364)
452 3tkl_A RAS-related protein RAB 95.7 0.0065 2.2E-07 48.5 3.3 23 91-113 17-39 (196)
453 1ypw_A Transitional endoplasmi 95.7 0.0033 1.1E-07 62.4 1.8 29 87-115 508-536 (806)
454 2i1q_A DNA repair and recombin 95.6 0.006 2.1E-07 53.6 3.2 27 87-113 95-121 (322)
455 2fg5_A RAB-22B, RAS-related pr 95.6 0.0062 2.1E-07 48.8 3.1 23 91-113 24-46 (192)
456 3iev_A GTP-binding protein ERA 95.6 0.006 2E-07 53.4 3.1 27 87-113 7-33 (308)
457 3te6_A Regulatory protein SIR3 95.6 0.0057 2E-07 53.9 3.0 26 89-114 44-69 (318)
458 2r2a_A Uncharacterized protein 95.6 0.0076 2.6E-07 49.4 3.5 21 90-110 5-25 (199)
459 1z06_A RAS-related protein RAB 95.6 0.0069 2.4E-07 48.3 3.2 23 91-113 21-43 (189)
460 1zbd_A Rabphilin-3A; G protein 95.6 0.0067 2.3E-07 49.0 3.1 23 91-113 9-31 (203)
461 2a5j_A RAS-related protein RAB 95.6 0.007 2.4E-07 48.4 3.3 23 91-113 22-44 (191)
462 3lxw_A GTPase IMAP family memb 95.6 0.0065 2.2E-07 51.4 3.1 24 90-113 21-44 (247)
463 3dz8_A RAS-related protein RAB 95.6 0.0067 2.3E-07 48.5 3.1 23 91-113 24-46 (191)
464 2cjw_A GTP-binding protein GEM 95.6 0.0072 2.5E-07 48.7 3.3 23 91-113 7-29 (192)
465 2ew1_A RAS-related protein RAB 95.6 0.0067 2.3E-07 49.4 3.1 23 91-113 27-49 (201)
466 1ksh_A ARF-like protein 2; sma 95.6 0.0081 2.8E-07 47.7 3.5 25 89-113 17-41 (186)
467 1zd9_A ADP-ribosylation factor 95.6 0.0074 2.5E-07 48.2 3.3 24 90-113 22-45 (188)
468 3cbq_A GTP-binding protein REM 95.6 0.0055 1.9E-07 49.5 2.5 22 91-112 24-45 (195)
469 2ohf_A Protein OLA1, GTP-bindi 95.6 0.0071 2.4E-07 54.9 3.4 26 88-113 20-45 (396)
470 3c5c_A RAS-like protein 12; GD 95.5 0.0075 2.6E-07 48.2 3.2 23 91-113 22-44 (187)
471 3hu3_A Transitional endoplasmi 95.5 0.013 4.5E-07 54.7 5.3 26 90-115 238-263 (489)
472 1jr3_A DNA polymerase III subu 95.5 0.007 2.4E-07 53.8 3.3 26 90-115 38-63 (373)
473 1x3s_A RAS-related protein RAB 95.5 0.0079 2.7E-07 47.9 3.3 23 91-113 16-38 (195)
474 2bcg_Y Protein YP2, GTP-bindin 95.5 0.0073 2.5E-07 48.9 3.1 23 91-113 9-31 (206)
475 3llm_A ATP-dependent RNA helic 95.5 0.008 2.7E-07 50.2 3.3 23 88-110 74-96 (235)
476 3b1v_A Ferrous iron uptake tra 95.5 0.0082 2.8E-07 51.6 3.5 23 91-113 4-26 (272)
477 3reg_A RHO-like small GTPase; 95.5 0.0081 2.8E-07 48.1 3.3 24 90-113 23-46 (194)
478 2xtp_A GTPase IMAP family memb 95.5 0.0092 3.1E-07 50.5 3.7 24 90-113 22-45 (260)
479 1zj6_A ADP-ribosylation factor 95.5 0.01 3.4E-07 47.2 3.7 24 90-113 16-39 (187)
480 1gwn_A RHO-related GTP-binding 95.5 0.0078 2.7E-07 49.1 3.1 23 91-113 29-51 (205)
481 2h17_A ADP-ribosylation factor 95.4 0.0069 2.3E-07 48.0 2.7 24 90-113 21-44 (181)
482 2o52_A RAS-related protein RAB 95.4 0.0073 2.5E-07 48.9 2.8 22 91-112 26-47 (200)
483 3cph_A RAS-related protein SEC 95.4 0.0086 2.9E-07 48.6 3.3 24 90-113 20-43 (213)
484 1u94_A RECA protein, recombina 95.4 0.0079 2.7E-07 53.9 3.3 27 87-113 60-86 (356)
485 2fh5_B SR-beta, signal recogni 95.4 0.0086 2.9E-07 48.8 3.3 24 90-113 7-30 (214)
486 2il1_A RAB12; G-protein, GDP, 95.4 0.008 2.7E-07 48.2 3.0 21 92-112 28-48 (192)
487 2e87_A Hypothetical protein PH 95.4 0.0075 2.6E-07 53.9 3.1 25 89-113 166-190 (357)
488 2qu8_A Putative nucleolar GTP- 95.4 0.0097 3.3E-07 49.2 3.5 24 90-113 29-52 (228)
489 3t34_A Dynamin-related protein 95.4 0.0078 2.7E-07 53.8 3.1 22 92-113 36-57 (360)
490 2fv8_A H6, RHO-related GTP-bin 95.4 0.0085 2.9E-07 48.7 3.1 23 91-113 26-48 (207)
491 2j0v_A RAC-like GTP-binding pr 95.4 0.011 3.9E-07 47.9 3.9 24 90-113 9-32 (212)
492 4bas_A ADP-ribosylation factor 95.4 0.0091 3.1E-07 47.8 3.2 25 89-113 16-40 (199)
493 2dy1_A Elongation factor G; tr 95.4 0.0089 3E-07 58.0 3.6 29 86-114 5-33 (665)
494 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.0088 3E-07 56.0 3.4 26 90-115 41-66 (500)
495 4dhe_A Probable GTP-binding pr 95.3 0.0056 1.9E-07 50.2 1.8 24 90-113 29-52 (223)
496 2qag_A Septin-2, protein NEDD5 95.3 0.012 4E-07 52.8 4.0 21 93-113 40-60 (361)
497 2j37_W Signal recognition part 95.3 0.0092 3.2E-07 55.9 3.4 27 88-114 99-125 (504)
498 1wf3_A GTP-binding protein; GT 95.3 0.01 3.4E-07 51.9 3.4 23 91-113 8-30 (301)
499 2f7s_A C25KG, RAS-related prot 95.3 0.0092 3.1E-07 48.7 3.0 23 91-113 26-48 (217)
500 3iby_A Ferrous iron transport 95.3 0.01 3.4E-07 50.6 3.2 22 92-113 3-24 (256)
No 1
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=2.6e-35 Score=243.60 Aligned_cols=181 Identities=40% Similarity=0.584 Sum_probs=167.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+.|+|+||||||||||++.|.+..+ .+.++++++||+++.|+.+|.+|+|++.++|..++.++.|++|+.++++.||++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 3589999999999999999987765 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc--CC
Q 023332 170 KKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV--KN 247 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~--~~ 247 (284)
.+.++..+++|+.||+|.+++++.+++..++...++||+.+|+.++|.+||..|+.++++.+..||..+..++... ..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~ 161 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA 161 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccC
Confidence 9999999999999999999999999987765678899999999999999999999999999999999988877654 46
Q ss_pred ccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 248 FDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 248 ~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
||++|+|++ +++++++|.++|..+
T Consensus 162 fD~vIvNdd--le~a~~~l~~iI~ae 185 (186)
T 1ex7_A 162 HDKVIVNDD--LDKAYKELKDFIFAE 185 (186)
T ss_dssp SSEEEECSS--HHHHHHHHHHHHTTC
T ss_pred CcEEEECcC--HHHHHHHHHHHHHhc
Confidence 999999987 999999999998653
No 2
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.97 E-value=4.6e-30 Score=216.38 Aligned_cols=190 Identities=36% Similarity=0.636 Sum_probs=166.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.+|++|+|+|||||||||+++.|++.++. +....++++|+++.++.+|.+|++++...|..++.++.|+++..++++.|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 56999999999999999999999998864 88888999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccC
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK 246 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~ 246 (284)
|...+.+++.++.|+.||+|++..+...+...+ ..+.+||+.+|+.+++.+||.+|+.++++.+.+|+..+..+..+..
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~-~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~~ 164 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAM-PEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMA 164 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHC-TTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHGG
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhC-CCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999998887 5667888888877999999999998888999999999888777778
Q ss_pred CccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 023332 247 NFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQR 280 (284)
Q Consensus 247 ~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~ 280 (284)
.+|++|+|++ +++++++|.+++...+.+...+
T Consensus 165 ~~d~vivN~~--~~~~~~~l~~~i~~~~~~~~~~ 196 (208)
T 3tau_A 165 SYDYAVVNDV--VANAVQKIKGIVETEHLKTERV 196 (208)
T ss_dssp GSSEEEECSS--HHHHHHHHHHHHHHHHTBHHHH
T ss_pred cCCEEEECcC--HHHHHHHHHHHHHHHHHhhhhh
Confidence 8999999975 9999999999999987766543
No 3
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.96 E-value=1.3e-29 Score=209.75 Aligned_cols=180 Identities=39% Similarity=0.573 Sum_probs=134.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
|++++|+||||||||||+++|.+.++ .++..+++++|.++.++.+|.+|.+++...|..++.++.++++..++++.||.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 57899999999999999999998875 57788899999999999999999999999999998888999999999999999
Q ss_pred CHHHHHHHHHcCCcEEEEecHHHHHHHHH-HhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc--
Q 023332 169 PKKQIREYMAKGYDIILRVDIQGAQTLRR-VLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV-- 245 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~~~~~~l~~-~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~-- 245 (284)
..+.+++.++.|+.|++|.++++...+.. .. ....+||+.+|+.+++.+||.+|+.++++.+.+|+..+..+++..
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~-~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~ 159 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPE-LNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAET 159 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGG-GCCEEEEEECSCC---------------------------------C
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcC-CCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999988887 44 678889999988899999999999988899999999988777665
Q ss_pred CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 246 KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 246 ~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..+|++|+|++ ++++++++.+++..
T Consensus 160 ~~~d~vi~nd~--~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 160 GAHDKVIVNDD--LDKAYKELKDFIFA 184 (186)
T ss_dssp CCCSEEEECSS--HHHHHHHHHHHHTT
T ss_pred cCCcEEEECcC--HHHHHHHHHHHHHh
Confidence 78999999885 99999999999864
No 4
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.96 E-value=9.3e-29 Score=205.76 Aligned_cols=177 Identities=26% Similarity=0.367 Sum_probs=149.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
|+..+|++++|+||||||||||++.|.+.++ .+...+++++|+++.|+.+|.+|++++.+.|..++.++.|++++++++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~ 93 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG 93 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence 3456799999999999999999999998876 577888999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK 243 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~ 243 (284)
|+||++.+.+++++++|+.||+|.+.+++.+++..+ ..+++||+.+|+.+ |..+..+.+.+|++... .+
T Consensus 94 n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~-~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~~~--~~ 162 (197)
T 3ney_A 94 NMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAE-LSPFIVFIAPTDQG--------TQTEALQQLQKDSEAIR--SQ 162 (197)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTT-TCEEEEEEEECCBS--------SCCHHHHHHHHHHHHHH--HH
T ss_pred eecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcC-CCceEEEEeCCCcc--------ccchHHHHHHHHHHHHH--Hh
Confidence 999999999999999999999999999999988765 67789999998742 33333445555554332 22
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+...||++|+|++ ++++++++.++|....
T Consensus 163 ~~~~fd~vivNd~--l~~a~~~l~~ii~~~~ 191 (197)
T 3ney_A 163 YAHYFDLSLVNNG--VDETLKKLQEAFDQAC 191 (197)
T ss_dssp HGGGCSEEEEESC--HHHHHHHHHHHHHHCC
T ss_pred hccCCCEEEECCC--HHHHHHHHHHHHHHcc
Confidence 3467999999987 9999999999997643
No 5
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.95 E-value=2e-27 Score=199.40 Aligned_cols=186 Identities=28% Similarity=0.479 Sum_probs=161.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
+.+|++|+|+|||||||||+++.|++.++. +...+++++|+++.++.+|.+|++++.+.|..++.++.|+++..+.++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNF 88 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCe
Confidence 467899999999999999999999988765 7778899999999999999999999999999888888899888888889
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCC--CeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGD--SAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK 243 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~--~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~ 243 (284)
|+...+.++.+++.|..||+|+++.+...++..+ . ...+||+.+++.+++.+|+..|+.++++.+.+++...+.++.
T Consensus 89 ~~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~-~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~ 167 (204)
T 2qor_A 89 YGTLKSEYDLAVGEGKICLFEMNINGVKQLKESK-HIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMD 167 (204)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCS-SCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhc-CCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 9999888999999999999999998888887654 3 568899985568999999999988788889889988766554
Q ss_pred --ccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 244 --HVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 244 --~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+...+|++|+|+ ++++++++|.++|.....
T Consensus 168 ~~~~~~~d~vi~n~--~~e~~~~~i~~~i~~~~~ 199 (204)
T 2qor_A 168 EADKVGFNYFIVND--DLARTYAELREYLLGSYP 199 (204)
T ss_dssp HHHHHTCSEEEECS--SHHHHHHHHHHHHHHHCT
T ss_pred HhhhccCcEEEECc--CHHHHHHHHHHHHHHHhh
Confidence 456789998886 699999999999987543
No 6
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.95 E-value=4.2e-27 Score=196.82 Aligned_cols=194 Identities=34% Similarity=0.607 Sum_probs=164.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
.+.+|++++|+||||||||||+++|++.++.......++++.+..+...+.+|.+.+...+..+...+.+.++..++++.
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERH 82 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEE
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeeccc
Confidence 45679999999999999999999999887755565667777776666778889999998888887777777777888888
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV 245 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~ 245 (284)
|+...+.+++.++.|..+++|++..++..+...+ ....+||+.+|+.+++.+|+.+|+.++++.+.+++..+..+.++.
T Consensus 83 ~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~-~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~ 161 (205)
T 3tr0_A 83 YGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELF-PPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAHY 161 (205)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHC-TTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTTG
T ss_pred ccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhC-CCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999989999999999999999998888888777 566788888877899999999999888888999999988887777
Q ss_pred CCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 023332 246 KNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQRSA 282 (284)
Q Consensus 246 ~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~~~ 282 (284)
..+|+||+|+ +++++++++.+++...+.+..++..
T Consensus 162 ~~~d~vi~n~--~~~~~~~~l~~~i~~~~~~~~~~~~ 196 (205)
T 3tr0_A 162 KEFDYLVVND--NFDQAVQNLIHIISAERLQRDVQEK 196 (205)
T ss_dssp GGCSEEEECS--SHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred cCCCEEEECC--CHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 8899999987 5999999999999988776665543
No 7
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.95 E-value=1.6e-26 Score=196.09 Aligned_cols=190 Identities=35% Similarity=0.625 Sum_probs=165.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC--CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD--SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+++|++++|+||||||||||++.|.+.++ .....+..++|.++.++..+.+|.|++...|..+...+.|+++..+.++
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~ 92 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGN 92 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhc
Confidence 67899999999999999999999998875 2555667778887777778899999999999988888888999988888
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhc
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKH 244 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~ 244 (284)
.||...+.++++++.|+.+|+|.+.....++.+.+. ....|++.+++.+.+.+||..|+.++++++..|+..+..++.+
T Consensus 93 ~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~ 171 (219)
T 1s96_A 93 YYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMP-HARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH 171 (219)
T ss_dssp EEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCT-TCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHcc-CCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999988889999999999999999999999998873 5678888888899999999999988999999999988878877
Q ss_pred cCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhh
Q 023332 245 VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQ 279 (284)
Q Consensus 245 ~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~ 279 (284)
...||++|+|++ ++++++++.+++.....+...
T Consensus 172 ~~~~d~~i~Nd~--l~~a~~~l~~ii~~~~~~~~~ 204 (219)
T 1s96_A 172 YAEYDYLIVNDD--FDTALTDLKTIIRAERLRMSR 204 (219)
T ss_dssp GGGSSEEEECSS--HHHHHHHHHHHHHHHHTBHHH
T ss_pred ccCCCEEEECcC--HHHHHHHHHHHHHHHHhhhHh
Confidence 778999999975 999999999999887665543
No 8
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=99.94 E-value=1.6e-26 Score=203.51 Aligned_cols=182 Identities=24% Similarity=0.268 Sum_probs=161.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEec-CHHHHHHhhcccchhhhhhhcccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
..++.|+|+|| ||+|+.+.|.+..+ .+..++++++|+++.|+.+|.+|+|+ +.+.|..++.++.|+++..+++|+
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 45677999999 49999999987766 68899999999999999999999998 888999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV 245 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~ 245 (284)
||++.+.++++++.|+.||+|.+++++.+++... ..+++|||.+|+.+++++|++.|+.++.+.+..++... +.+..
T Consensus 175 YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~-~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~--e~e~~ 251 (292)
T 3tvt_A 175 YGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQ-LYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKM--EQEFG 251 (292)
T ss_dssp EEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTT-CCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHH--HHHHT
T ss_pred eEEehHHHHHHHHcCCcEEEeccchhhhhccccc-ccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHH--HHhhh
Confidence 9999999999999999999999999999998775 78899999999999999999888777667777776544 34446
Q ss_pred CCccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 246 KNFDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 246 ~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
+.||++|+|++ +++++++|.++|.++..+.
T Consensus 252 ~~fD~vIvNdd--le~a~~~l~~iI~~e~~~~ 281 (292)
T 3tvt_A 252 EYFTGVVQGDT--IEEIYSKVKSMIWSQSGPT 281 (292)
T ss_dssp TTCSEEECCSS--HHHHHHHHHHHHHHHTCSE
T ss_pred hhCCEEEECcC--HHHHHHHHHHHHHHhhCCC
Confidence 78999999987 9999999999999886543
No 9
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.93 E-value=3e-26 Score=195.79 Aligned_cols=196 Identities=33% Similarity=0.594 Sum_probs=146.2
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHH-hccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhh
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLR-ESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYAL 160 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
..++.+.+|++++|+||||||||||+++|+ +.++.+......+++++..++..|.+|.+.+...|..+...+.+.++..
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAE 98 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhh
Confidence 344456789999999999999999999999 8877666677888888888888889999999999988887778888878
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE 240 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~ 240 (284)
+.++.|+...+.+++.++.|..+|+|.+..+...+...++.....||+.+|+.+++.+|+..|+..+++.+.+++..+..
T Consensus 99 ~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~ 178 (231)
T 3lnc_A 99 VFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAF 178 (231)
T ss_dssp ETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHH
T ss_pred hccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 88888888877888899999999999988888777766534567788888788999999999988888899999999888
Q ss_pred HhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhh
Q 023332 241 EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQ 279 (284)
Q Consensus 241 e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~ 279 (284)
+.++...+|+||+|++ ++++.+++.++++..+.+...
T Consensus 179 ~~~~~~~~d~vI~n~~--~e~~~~~l~~~i~~~~~~~~~ 215 (231)
T 3lnc_A 179 EISHCEAYDYVIVNED--IEETADRISNILRAEQMKTCR 215 (231)
T ss_dssp HHTTGGGSSEEEECSS--HHHHHHHHHHHHHHHHTBGGG
T ss_pred HHhhhcCCeEEEECcC--HHHHHHHHHHHHHHHhhcccc
Confidence 8877788999999874 999999999999998776544
No 10
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=99.93 E-value=8.9e-26 Score=199.51 Aligned_cols=180 Identities=23% Similarity=0.302 Sum_probs=158.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEec-CHHHHHHhhcccchhhhhhhcccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
..|++|+|+|| ||+||++.|.+.++ .+..+++++||+++.|+.+|.+|+|+ +.++|..++.++.|++++.++++.
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 45788999999 79999999988765 68889999999999999999999999 999999999999999999999999
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHH-HHhhc
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAR-EEIKH 244 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~-~e~~~ 244 (284)
||+..+.+++++++|+.||+|++.+++.+++... ..+++|||.+|+.++|++ |..|+ +++++.+|++++. .+..+
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~-~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~ 255 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF 255 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTT-CCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcc-cCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988877643 456999999999888877 87776 5577888998874 35566
Q ss_pred cCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 245 VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 245 ~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
...||++|+|++ +++++++|.++|...+..
T Consensus 256 ~~~fd~vivNd~--le~a~~~l~~ii~~~~~~ 285 (295)
T 1kjw_A 256 TECFSAIVEGDS--FEEIYHKVKRVIEDLSGP 285 (295)
T ss_dssp GGGCSEEECCSS--HHHHHHHHHHHHHHHSCS
T ss_pred cccCeEEEECcC--HHHHHHHHHHHHHhccCC
Confidence 678999998875 999999999999876543
No 11
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.93 E-value=3.6e-26 Score=188.16 Aligned_cols=173 Identities=28% Similarity=0.451 Sum_probs=143.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.+|++++|+||||||||||++.|.+.++ .+...+++++|+++.++.+|.+|++++...|..++.++.++++.++.++.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence 4589999999999999999999998775 366677889999999989999999999999999988899999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHh--hc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEI--KH 244 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~--~~ 244 (284)
|...+.+++++++|+.||+|.+.+++.+++..+ ..+.+||+.+|+.+++.+| ++.+ +|+..+..++ .+
T Consensus 83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~-~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~~~ 152 (180)
T 1kgd_A 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAE-FAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQRTY 152 (180)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTT-TCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhC-CCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHHhh
Confidence 999999999999999999999999988887654 5678899999875655443 3456 6676665554 34
Q ss_pred cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 245 VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 245 ~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
...+|++|+|++ ++++++++.++|.+
T Consensus 153 ~~~~d~~i~n~~--~~~~~~~l~~~i~~ 178 (180)
T 1kgd_A 153 AHYFDLTIINNE--IDETIRHLEEAVEL 178 (180)
T ss_dssp GGGCSEEEECSS--HHHHHHHHHHHHHH
T ss_pred hCCCcEEEECcC--HHHHHHHHHHHHHH
Confidence 578999999875 99999999999975
No 12
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.93 E-value=4.4e-25 Score=184.48 Aligned_cols=188 Identities=36% Similarity=0.570 Sum_probs=159.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
++|++++|+||||||||||+++|.+.++ .++..+.+++|.++.|+.+|.+|.+++...|..++.++.++++.++.+++|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~ 81 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLY 81 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccC
Confidence 3588999999999999999999988765 566777888888888888999999999999998888889999999999999
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhcc-
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHV- 245 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~- 245 (284)
|...+.++++++.|..++++....++..+.... ..+.++|+..|+.+++.+|+..|+.++++.+.+++..+..++...
T Consensus 82 g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~ 160 (198)
T 1lvg_A 82 GTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTD-LCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSK 160 (198)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHTTSS-CCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGG
T ss_pred CCCHHHHHHHHHcCCcEEEECCHHHHHHHHhcC-CCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998887776665432 456778899988999999999999999999999998877766544
Q ss_pred --CCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 246 --KNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 246 --~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
..+|++++|++ ++++++++.+++.....+.+
T Consensus 161 ~~~~~D~iivnd~--le~a~~~l~~ii~~~~~~~~ 193 (198)
T 1lvg_A 161 EPGLFDLVIINDD--LDKAYATLKQALSEEIKKAQ 193 (198)
T ss_dssp STTTCSEEEECSS--HHHHHHHHHHHTHHHHHHTT
T ss_pred ccCCceEEEECCC--HHHHHHHHHHHHHHHhhhhh
Confidence 67999999986 99999999999988765443
No 13
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.92 E-value=1.3e-24 Score=181.67 Aligned_cols=194 Identities=37% Similarity=0.673 Sum_probs=129.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc-CCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESR-DSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
|.+.+|++++|+|||||||||+++.|++.+ +..+....+.++.+..+...+.++.+.+...+..+..++.++++..+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVG 80 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECC
Confidence 456789999999999999999999999887 4444344555666655556677888888888888777778888888888
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK 243 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~ 243 (284)
+.||...+.++..++.|..||+|+.+.....+...+ .+..++++.+++.+++.+|+.+|+..+.+.+.+++..+..+.+
T Consensus 81 ~~~g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~ 159 (207)
T 2j41_A 81 NYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKF-PDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVE 159 (207)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHC-TTSEEEEEECCC---------------------------CGGG
T ss_pred eecCCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhc-CCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 888888888888899999999999887777777665 3556777776567899999999987777788888887765555
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhhc
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQRS 281 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~~ 281 (284)
+...+|++|+|+ +++++.++|.+++.....+.+++.
T Consensus 160 ~~~~~d~vI~n~--~~e~~~~~i~~~l~~~~~~~~~~~ 195 (207)
T 2j41_A 160 MMNLYDYVVVND--EVELAKNRIQCIVEAEHLKRERVE 195 (207)
T ss_dssp GGGGCSEEEECS--SHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred ccccCCEEEECC--CHHHHHHHHHHHHHHhhcchhhhH
Confidence 556789998876 699999999999999887765543
No 14
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=99.89 E-value=2.3e-22 Score=197.84 Aligned_cols=181 Identities=23% Similarity=0.307 Sum_probs=158.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEec-CHHHHHHhhcccchhhhhhhccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFV-SKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+..+++|+|+||+ |+||++.|...++ .+.+++++++|+++.||.+|.+|+|+ +.++|.+++.++.|++|+.++++
T Consensus 528 ~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~ 604 (721)
T 2xkx_A 528 VHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSH 604 (721)
T ss_pred CCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCc
Confidence 3467899999994 9999999988765 68889999999999999999999999 99999999999999999999999
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH-Hhh
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-EIK 243 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-e~~ 243 (284)
+||+..+.+++++++|+.||+|++.+++.+++... ..+++|||.+|+.++|++ |+.|. +++++..|++++.. ++.
T Consensus 605 ~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~-~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~~a~~~e~~ 680 (721)
T 2xkx_A 605 LYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH-LHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQE 680 (721)
T ss_pred cceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcc-cCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888887543 445899999999888877 87776 45678889988753 666
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
+.+.||++|+|++ ++++++++.++|......
T Consensus 681 ~~~~fd~vi~Nd~--l~~a~~~l~~~i~~~~~~ 711 (721)
T 2xkx_A 681 FTECFSAIVEGDS--FEEIYHKVKRVIEDLSGP 711 (721)
T ss_pred ccccCcEEEECcC--HHHHHHHHHHHHHhccCC
Confidence 7788999999976 999999999999876543
No 15
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=1.4e-21 Score=165.52 Aligned_cols=195 Identities=27% Similarity=0.462 Sum_probs=149.5
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhc
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
++.+.+|++++|+||||||||||+++|++.++ .+.+....+++.+..+...+.+|.+++...|..+..+..++++..+.
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 96 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYA 96 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcc
Confidence 33467799999999999999999999998875 22222334445455555678889999998888776667778887777
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLG-DSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE 241 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e 241 (284)
++.||...+.++++++.+..++++.++.+.++.+..+. ..+..+++..|+..++.+|+..|+..+++.+.+++.....+
T Consensus 97 ~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~ 176 (218)
T 1z6g_A 97 NNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIE 176 (218)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 88888888889999999999999988887776654331 12377888888899999999999999999999988876655
Q ss_pred hhcc--CCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 023332 242 IKHV--KNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQR 280 (284)
Q Consensus 242 ~~~~--~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~ 280 (284)
.... ..+|.|+++++ +++++..+..++...+.+++.-
T Consensus 177 ~~~~h~~~~d~iiv~~~--~~ea~~~~~~ii~~~~~~~~~~ 215 (218)
T 1z6g_A 177 LHEANLLNFNLSIINDD--LTLTYQQLKNYLLNSYIHLNNH 215 (218)
T ss_dssp HHHHTTSCCSEEEECSS--HHHHHHHHHHHHHHHTTCC---
T ss_pred HHhhcccCCCEEEECCC--HHHHHHHHHHHHHHHHHhhhcc
Confidence 4322 57899999876 9999999999999887776553
No 16
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.75 E-value=9.6e-17 Score=134.48 Aligned_cols=182 Identities=38% Similarity=0.607 Sum_probs=132.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc--
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG-- 163 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 163 (284)
.+.+|++++|+||||||||||+++|++.++........+.+.+..+...+.+|.+.+...|..+.....+.++..+++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~ 95 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGL 95 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCch
Confidence 467899999999999999999999998875333333444444544555678888988888876655555655555556
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK 243 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~ 243 (284)
+.|+...+.+++.++.+..++++....++..+...+ ...+.+++..|+...+.+++..++.+.+.....++.....++.
T Consensus 96 ~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 96 HRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTM-PEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp EEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHC-TTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhc-CCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 567777777888888888888888887777777776 4556677777778999999988877666667777766655554
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
....+++++++.+ ++++......++
T Consensus 175 ~~~g~tvi~vtHd--l~~~~~~~d~i~ 199 (207)
T 1znw_A 175 AQGDFDKVVVNRR--LESACAELVSLL 199 (207)
T ss_dssp GGGGSSEEEECSS--HHHHHHHHHHHH
T ss_pred hhccCcEEEECCC--HHHHHHHHHHHH
Confidence 4446788998876 888776665554
No 17
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=99.74 E-value=1.7e-17 Score=151.87 Aligned_cols=152 Identities=14% Similarity=0.139 Sum_probs=120.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..+++|+|+|||| +||.+.|.+..+..... ++|.++.++.+|.+|+|++
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~---~tr~pR~gE~dG~~Y~Fv~------------------------- 278 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI---AKSEPRDAGTDQRSSGIIR------------------------- 278 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE---CCCCCCCSSSCCC--CCCC-------------------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccc---ccCCCCCcccCCccCCcCc-------------------------
Confidence 5688999999998 89999997776643222 5788999999999999872
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc-cCCHHHHHHHHHHHHH-Hhhcc
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK-TESREELLVRIATARE-EIKHV 245 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~-~~~~~~i~~rl~~~~~-e~~~~ 245 (284)
.+.+++++++|+.||+|.+++++.+++... ..+++|||.+|+.++|++| +.|. .++++.+..+++++.+ +..+.
T Consensus 279 --~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~~~L~~~-~~r~~~~s~e~~~~~~~~a~~~e~~~~ 354 (391)
T 3tsz_A 279 --LHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTM-RMRLCPESRKSARKLYERSHKLRKNNH 354 (391)
T ss_dssp --HHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECCCHHHHHHH-HHHHCSSCCCCHHHHHHHHHHHHHHHG
T ss_pred --HHHHHHHHHcCCEEEEEeCHHHHHHHHhCC-CCCEEEEEeCcCHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 346778999999999999999999998765 6789999999999999886 5554 3555667666776633 45566
Q ss_pred CCccEEEECCCCCHH-HHHHHHHHHHHHHHhh
Q 023332 246 KNFDYVVVNAEGKLD-VAVKLVESIIDAEKAK 276 (284)
Q Consensus 246 ~~~D~vivn~~~~~e-~~~~~i~~~i~~~~~~ 276 (284)
+.||++|+|++ ++ .+++++.++|...+..
T Consensus 355 ~~fd~vivNd~--l~~~a~~~l~~ii~~~~~~ 384 (391)
T 3tsz_A 355 HLFTTTINLNS--MNDGWYGALKEAIQQQQNQ 384 (391)
T ss_dssp GGCSEEEECCT--TCCHHHHHHHHHHHHHHHS
T ss_pred ccCcEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence 88999999987 87 6999999999887653
No 18
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.71 E-value=3.2e-17 Score=152.29 Aligned_cols=154 Identities=15% Similarity=0.122 Sum_probs=111.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
+..+++|+|+||+|+| |.+.|.+..+..... .++| ++.|+.+|.+|+|
T Consensus 221 ~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s--~~TR-pR~gE~dG~~Y~F-------------------------- 268 (468)
T 3shw_A 221 AGFLRPVTIFGPIADV---AREKLAREEPDIYQI--AKSE-PRDAGTDQRSSGI-------------------------- 268 (468)
T ss_dssp CSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE--CCCB-C----------CB--------------------------
T ss_pred CCCCCEEEEECCCHHH---HHHHHHHhCCCceee--ecCC-CCCcccccccCCc--------------------------
Confidence 3568899999999999 888887766533222 3578 8999999998887
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH-Hhhcc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-EIKHV 245 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~-e~~~~ 245 (284)
++.+.+++++++|+.||+|.+++++.+++... ..+++|||.+|+.++|+++......++++.+.++++++.+ +..+.
T Consensus 269 -Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~-~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~~ 346 (468)
T 3shw_A 269 -IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQ-WYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNH 346 (468)
T ss_dssp -CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTT-CCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHHG
T ss_pred -ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcC-CCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 35567889999999999999999999998765 6789999999999998874333334455667677766533 45567
Q ss_pred CCccEEEECCCCCH-HHHHHHHHHHHHHHHhh
Q 023332 246 KNFDYVVVNAEGKL-DVAVKLVESIIDAEKAK 276 (284)
Q Consensus 246 ~~~D~vivn~~~~~-e~~~~~i~~~i~~~~~~ 276 (284)
+.||++|+|++ + +++++++.++|...+..
T Consensus 347 ~~fD~vIvNdd--l~d~a~~~L~~ii~~~~~~ 376 (468)
T 3shw_A 347 HLFTTTINLNS--MNDGWYGALKEAIQQQQNQ 376 (468)
T ss_dssp GGCSEEEECBT--TBCHHHHHHHHHHHHHHTS
T ss_pred ccCCEEEECCC--cHHHHHHHHHHHHHHhcCC
Confidence 88999999987 8 59999999999987654
No 19
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.61 E-value=8.1e-15 Score=124.82 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=104.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccch-hhhh---hhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNEL-LEYA---LVY 162 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~ 162 (284)
+.+|++|+|.|++||||||+++.|++.+.. +... ..++.+..... .+.+...+.++.. .+.. .+.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~-~~~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~~ 91 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV-IMTREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLFA 91 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE-EEECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc-eeecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 467999999999999999999999988753 2221 12233322110 1122222222221 0000 011
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEE----------ec-----HHHHHHHHH---HhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILR----------VD-----IQGAQTLRR---VLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld----------~~-----~~~~~~l~~---~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
...+....+.+...++.|..||+| +. ...+..+.. ....++.+||+++| .+++.+|+.+|+
T Consensus 92 a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~-~e~~~~R~~~R~ 170 (229)
T 4eaq_A 92 ASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNS 170 (229)
T ss_dssp HHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 111111111234667889999999 42 122222222 22357789999997 699999999885
Q ss_pred cC----C--HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 225 TE----S--REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 225 ~~----~--~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+. . ..++.+++...+.++.......++++|++++++++.++|.+++.+...
T Consensus 171 ~~~dr~e~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eev~~~I~~~l~~~l~ 227 (229)
T 4eaq_A 171 RDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 227 (229)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTTCTTTEEEEETTSCHHHHHHHHHHHHHHHHT
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHHhc
Confidence 31 1 345667777666655433334578888889999999999999987643
No 20
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.60 E-value=1e-14 Score=124.54 Aligned_cols=178 Identities=18% Similarity=0.200 Sum_probs=108.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-c---cch---hhhhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-K---NEL---LEYALV 161 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~---~~~~~~ 161 (284)
+|.+|+|.|++||||||+++.|++.+...+......+|.|... ..| +.+...+. . ..+ .+...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t-~~g--------~~ir~~l~~~~~~~~~~~~~e~lLf 96 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGT-LLA--------EKLRALVKEEHPGEELQDITELLLV 96 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSS-HHH--------HHHHHHHHSCCTTSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCC-HHH--------HHHHHHHhhCCCcccCCHHHHHHHH
Confidence 4899999999999999999999887753333323445555321 111 22222221 0 111 112222
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHH---hCCCeEEEEEecCCHHHHHHHHHhh
Q 023332 162 YGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRV---LGDSAVFVFLMAESETALVERLVER 223 (284)
Q Consensus 162 ~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~---~g~~~~~I~l~~p~~~~l~~Rl~~R 223 (284)
.++.+....+.|+..+++|..||+|-.. ..+..+... ...++.+||+++| .+++.+|+.+|
T Consensus 97 ~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~-~e~~~~Ri~~R 175 (236)
T 3lv8_A 97 YAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDID-PKLGLERARGR 175 (236)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhc
Confidence 3333333344567788999999999321 222333321 1357899999997 69999999988
Q ss_pred ccC---C--HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 224 KTE---S--REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 224 ~~~---~--~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
+.. . ..++.+++...+.++..... +++++|++++++++.++|.++|++...++
T Consensus 176 ~~~dr~E~~~~~~~~rv~~~y~~la~~~~-~~~vIDa~~sieeV~~~I~~~l~~~l~~~ 233 (236)
T 3lv8_A 176 GELDRIEKMDISFFERARERYLELANSDD-SVVMIDAAQSIEQVTADIRRALQDWLSQV 233 (236)
T ss_dssp -CCCTTTTSCHHHHHHHHHHHHHHHHHCT-TEEEEETTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHCC-CEEEEeCCCCHHHHHHHHHHHHHHHHHhh
Confidence 631 1 14567777776665543222 38888999999999999999998876543
No 21
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.60 E-value=1.5e-14 Score=121.70 Aligned_cols=177 Identities=14% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc---h---hhhhhhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE---L---LEYALVY 162 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~ 162 (284)
+|++|+|.|++||||||+++.|++.+...+..+ ..+|.|..... | +.+...+.++. + .+..-+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~~~~-g--------~~i~~~l~~~~~~~~~~~~~~llf~ 74 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGGTPL-A--------ERIRELLLAPSDEPMAADTELLLMF 74 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCSSHH-H--------HHHHHHHHSCCSSCCCHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCCCHH-H--------HHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 589999999999999999999988765333322 23444431110 1 11222222111 1 1111122
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHH---hCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRV---LGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~---~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
.+.+....+.++..++.|..||+|-.. ..+..+... ...++.+||+++| .+++.+|+.+|+
T Consensus 75 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~-~e~~~~Ri~~R~ 153 (213)
T 4edh_A 75 AARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLP-VEIGLARAAARG 153 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhcC
Confidence 222222234566778899999999322 223333322 2468899999997 699999999885
Q ss_pred c-C-C---HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 225 T-E-S---REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 225 ~-~-~---~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
. + . ..++.+++...+.++.......++++|++++++++.++|.+.+.....+
T Consensus 154 ~~dr~E~~~~~~~~rv~~~y~~l~~~~~~~~~vIDa~~s~eeV~~~I~~~l~~~l~~ 210 (213)
T 4edh_A 154 RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER 210 (213)
T ss_dssp SCCTTTTSCHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred CcCcccccHHHHHHHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 3 1 1 1356677766665543322345788899999999999999999886544
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.60 E-value=4.9e-14 Score=113.59 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=98.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+|++||||||+++.| +.++...+..++..+..... .+ ........+.... ....+ .....
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--------~~~~~--~~~~~ 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSI--EA--KPGERLMDFAKRL--------REIYG--DGVVA 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHH--HC-----CCHHHHHHHH--------HHHHC--TTHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHh--cC--CChhHHHHHHHHH--------HhhCC--HHHHH
Confidence 57999999999999999999 66643222222222110000 00 0000000111000 00000 01112
Q ss_pred HHHHHHH--HcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc----CCHHHHHHHHHHHHH--
Q 023332 171 KQIREYM--AKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT----ESREELLVRIATARE-- 240 (284)
Q Consensus 171 ~~i~~~l--~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~----~~~~~i~~rl~~~~~-- 240 (284)
..+.+.+ ..+..+|+|+.. .....+...++.++.+||+++| .+++.+|+..|++ .+.+.+.+++.....
T Consensus 67 ~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~ 145 (179)
T 3lw7_A 67 RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSP-PKIRYKRMIERLRSDDSKEISELIRRDREELKLG 145 (179)
T ss_dssp HHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECC-HHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECC-HHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC
Confidence 3344555 667889999863 3334555666566789999997 6999999999976 566777777643221
Q ss_pred HhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 241 EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 241 e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
...+...+|++|.|+ ++++++.++|.+++...
T Consensus 146 ~~~~~~~ad~vId~~-~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 146 IGEVIAMADYIITND-SNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHHTCSEEEECC-SCHHHHHHHHHHHHHHH
T ss_pred hHhHHHhCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 223345789888766 69999999999998764
No 23
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.60 E-value=6.4e-15 Score=121.51 Aligned_cols=173 Identities=17% Similarity=0.265 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.++.+|+|+|++||||||+++.|++.++...+..++..+.. ..+... ...+...+.++...+... .+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~--------~~~i~~~~~~g~~~~~~~----~~ 74 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSAR--------GKKLSEIMEKGQLVPLET----VL 74 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHH--------HHHHHHHHHTTCCCCHHH----HH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChH--------HHHHHHHHHcCCcCCHHH----HH
Confidence 45789999999999999999999987753333322222211 011000 011111111121111111 11
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHH---HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQ---GAQTLRRVLGDSAVFVFLMAESETALVERLVERKT------ESREELLVRIAT 237 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~---~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~rl~~ 237 (284)
......+...+..|..+|+|+.+. ....+...+...+.+||+++| .+++.+|+..|+. .+.+.+.+++..
T Consensus 75 ~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~ 153 (196)
T 2c95_A 75 DMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAG-PETMTQRLLKRGETSGRVDDNEETIKKRLET 153 (196)
T ss_dssp HHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHTSSSCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHccCCcCCCCCCCHHHHHHHHHH
Confidence 112234444556788999997442 222333333456689999997 6999999988852 356677777776
Q ss_pred HHHHhhc----cCCcc-EEEECCCCCHHHHHHHHHHHHHHH
Q 023332 238 AREEIKH----VKNFD-YVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 238 ~~~e~~~----~~~~D-~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
+..+... ....| ++++|+++++++++++|.++++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 154 YYKATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHHHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 5543221 11234 345677789999999999998754
No 24
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.59 E-value=7.1e-15 Score=123.03 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=97.1
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-chhh---hhh
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-ELLE---YAL 160 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~ 160 (284)
|.+.+|++|+|+|++||||||+++.|++.++..++.+ +..+.+..+...+ ..+...+..+ .+-. ...
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v-~~~~~~~~~~~~~--------~~i~~~~~~~~~~~~~~~~~~ 74 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRA-ELLRFPERSTEIG--------KLLSSYLQKKSDVEDHSVHLL 74 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHH--------HHHHHHHTTSSCCCHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE-EEeeCCCCCCcHH--------HHHHHHHhcCCCCCHHHHHHH
Confidence 4456789999999999999999999998764222222 1122221110000 0011111100 0000 000
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc-
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK- 224 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~- 224 (284)
+....+.. .+.+...+..|..||+|..+ ..+..+......++.+||+++| .+++.+|+.+|.
T Consensus 75 ~~~~r~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~Rl~r~~~ 152 (215)
T 1nn5_A 75 FSANRWEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQ-LADAAKRGAFGHE 152 (215)
T ss_dssp HHHHHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECC-HHHHHHC-----C
T ss_pred HHHHHHHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCC-HHHHHHHhccCcc
Confidence 11111121 13456677889999999533 1111111111235688999997 699999997542
Q ss_pred cCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 225 TESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 225 ~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
.....++.+++...+.+.......+++++|++++++++.++|.+++......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~l~~ 204 (215)
T 1nn5_A 153 RYENGAFQERALRCFHQLMKDTTLNWKMVDASKSIEAVHEDIRVLSEDAIAT 204 (215)
T ss_dssp TTCSHHHHHHHHHHHHHHTTCTTSCEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHhh
Confidence 2222445566666555543333456677777789999999999999876543
No 25
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.59 E-value=1.1e-14 Score=125.07 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=106.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
.++++|+|+|++||||||+++.|++.++..++..++..|... .+...| ..+...+..+.+.++..+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g--------~~i~~~~~~g~~~~~~~~----- 93 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELG--------LKIKNIINEGKLVDDQMV----- 93 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHH--------HHHHHHHHTTCCCCHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHH--------HHHHHHHhcCCCCcHHHH-----
Confidence 357899999999999999999999887655565556555421 111111 123333333333333221
Q ss_pred CCCHHHHHHHHH---cCCcEEEEecHHHHHHHH------HHhC-CCeEEEEEecCCHHHHHHHHHhhc------------
Q 023332 167 GIPKKQIREYMA---KGYDIILRVDIQGAQTLR------RVLG-DSAVFVFLMAESETALVERLVERK------------ 224 (284)
Q Consensus 167 g~~~~~i~~~l~---~g~~vvld~~~~~~~~l~------~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~------------ 224 (284)
...+...+. .+..+|+|+.+....+.. ...+ ..+.+|++++| .+++.+|+..|.
T Consensus 94 ---~~~~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p-~e~~~~Rl~~R~~~~~~g~~y~~~ 169 (243)
T 3tlx_A 94 ---LSLVDEKLKTPQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVP-DEVLVNRISGRLIHKPSGRIYHKI 169 (243)
T ss_dssp ---HHHHHHHTTSGGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETT
T ss_pred ---HHHHHHHHhcccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCC-HHHHHHHHHcCCCCcccCcccccc
Confidence 112223333 377899998653332221 1122 35688999997 599999999775
Q ss_pred ---------------------cCCHHHHHHHHHHHHHHhhcc-----CCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 225 ---------------------TESREELLVRIATAREEIKHV-----KNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 225 ---------------------~~~~~~i~~rl~~~~~e~~~~-----~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
+++++.+.+|+..+..+.... ...-++.+|++++++++.++|.++|.
T Consensus 170 ~~pp~~~~~~~~~~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 170 FNPPKVPFRDDVTNEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQHID 242 (243)
T ss_dssp TBCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred cCCCcccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHc
Confidence 357789999999877654321 11136777888999999999998875
No 26
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.59 E-value=7.4e-15 Score=121.41 Aligned_cols=172 Identities=16% Similarity=0.209 Sum_probs=97.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.+.+|+|+|++||||||+++.|++.++...+..++..+... .+...+ ..+...+..+...+...+. .
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~~~~~----~ 78 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERS--------KLIRDIMERGDLVPSGIVL----E 78 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHH--------HHHHHHHHTTCCCCHHHHH----H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHH--------HHHHHHHHcCCcCCHHHHH----H
Confidence 36789999999999999999999887532222222211100 000000 0111111111111111110 0
Q ss_pred CCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC------CHHHHHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE------SREELLVRIATA 238 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~------~~~~i~~rl~~~ 238 (284)
...+.+...+..|..+|+|+.+ .....+...++..+.+||+++| .+++.+|+.+|... +.+.+.+|+..+
T Consensus 79 ~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~ 157 (199)
T 2bwj_A 79 LLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCS-ADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAY 157 (199)
T ss_dssp HHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHH
Confidence 0112333334468899999754 2233344444445689999997 69999999988642 235566776554
Q ss_pred HHHhh----ccCCcc-EEEECCCCCHHHHHHHHHHHHHHH
Q 023332 239 REEIK----HVKNFD-YVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 239 ~~e~~----~~~~~D-~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..+.. .....+ ++++|+++++++++++|.+++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~id~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 158 YRASIPVIAYYETKTQLHKINAEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHHHHSEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 44332 112223 466777789999999999998753
No 27
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.59 E-value=3.4e-14 Score=118.09 Aligned_cols=173 Identities=20% Similarity=0.287 Sum_probs=100.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC--CCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM--RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
...+.+|+|+|++||||||+++.|++.++...+..++..+.. ..+...+ +.+...+.++.+.+...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~~~---- 79 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYG--------ELIKNCIKEGQIVPQEI---- 79 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCH--------HHHHHHHHTTCCCCHHH----
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHH--------HHHHHHHHcCCcCCHHH----
Confidence 456789999999999999999999987764333333332221 0111111 11111111121111110
Q ss_pred ccCCCHHHHHHHHHcC-CcEEEEecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc------cCCHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKG-YDIILRVDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK------TESREELLVR 234 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g-~~vvld~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i~~r 234 (284)
.+....+.+...+..| ..+|+|+.+ .....+...+...+.+||+++| .+++.+|+.+|+ .++.+.+.++
T Consensus 80 ~~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~Rl~~R~~~~~~~~~~~e~~~~r 158 (203)
T 1ukz_A 80 TLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCP-EDIMLERLLERGKTSGRSDDNIESIKKR 158 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHHHHHHHHCCTTCSHHHHHHH
T ss_pred HHHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence 0111233445566677 578888754 2223343344345688999997 699999998875 2356677777
Q ss_pred HHHHHHH----hhccCCccE-EEECCCCCHHHHHHHHHHHHHH
Q 023332 235 IATAREE----IKHVKNFDY-VVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 235 l~~~~~e----~~~~~~~D~-vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+...... .++....|. +++|++++++++.++|.++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 159 FNTFKETSMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHTTHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 6554321 122233454 4567779999999999998865
No 28
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.59 E-value=8.1e-15 Score=123.17 Aligned_cols=166 Identities=17% Similarity=0.191 Sum_probs=99.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKK 171 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~ 171 (284)
.|+|+|++||||||+++.|++.++...+..++..|....+. .. ....+...+..+.+.+...+ ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~---~~----~~~~~~~~~~~g~~~~~~~~--------~~ 66 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEE---TP----LGLEAKSYIDKGELVPDEVT--------IG 66 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTT---CH----HHHHHHHHHTTTCCCCHHHH--------HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcC---CH----HHHHHHHHHHCCCCCCHHHH--------HH
Confidence 58999999999999999999887655554445444321110 00 00111222222222221110 11
Q ss_pred HHHHHHH---cCCcEEEEecH---HHHHHHHH---HhCC-CeEEEEEecCCHHHHHHHHHhh------------------
Q 023332 172 QIREYMA---KGYDIILRVDI---QGAQTLRR---VLGD-SAVFVFLMAESETALVERLVER------------------ 223 (284)
Q Consensus 172 ~i~~~l~---~g~~vvld~~~---~~~~~l~~---~~g~-~~~~I~l~~p~~~~l~~Rl~~R------------------ 223 (284)
.+...+. .+..+|+|+.+ .....+.. ..|. .+.+|++++|. +++.+|+..|
T Consensus 67 ~~~~~l~~~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~ 145 (216)
T 3dl0_A 67 IVKERLGKDDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLMERLTGRRICSVCGTTYHLVFNPPK 145 (216)
T ss_dssp HHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHHHHHTEEEETTTCCEEETTTBCCS
T ss_pred HHHHHHhcccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHCCCcCCccCCccccccCCCc
Confidence 2233333 37889999754 22222322 2232 34789999984 9999999998
Q ss_pred ---------------ccCCHHHHHHHHHHHHHHhhcc-----CCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 224 ---------------KTESREELLVRIATAREEIKHV-----KNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 224 ---------------~~~~~~~i~~rl~~~~~e~~~~-----~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.+++++.+.+|+..+..+.... ....++++|++++++++.++|.++++..
T Consensus 146 ~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~~ 215 (216)
T 3dl0_A 146 TPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLGGL 215 (216)
T ss_dssp STTBCTTTCCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHGGG
T ss_pred ccCccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence 4567888999988765543221 1112567788899999999999988643
No 29
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.58 E-value=1.6e-14 Score=121.28 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=99.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
+.|+|+|++||||||+++.|++.++...+..++..|+...+ +.. ....+...+..+.+.+... ..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~---~~~----~~~~~~~~~~~g~~~~~~~--------~~ 65 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN---GTE----LGLKAKSFMDQGNLVPDEV--------TI 65 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT---TCH----HHHHHHHHHHHTCCCCHHH--------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc---CCH----HHHHHHHHHHCCCCCCHHH--------HH
Confidence 35899999999999999999887764444444444432111 000 0011111111222221111 01
Q ss_pred HHHHHHHH---cCCcEEEEecH---HHHHHHHH---HhCC-CeEEEEEecCCHHHHHHHHHhh-----------------
Q 023332 171 KQIREYMA---KGYDIILRVDI---QGAQTLRR---VLGD-SAVFVFLMAESETALVERLVER----------------- 223 (284)
Q Consensus 171 ~~i~~~l~---~g~~vvld~~~---~~~~~l~~---~~g~-~~~~I~l~~p~~~~l~~Rl~~R----------------- 223 (284)
..+.+.+. .+..+|+|+.+ .....+.. ..|. .+.+|++++| .+++.+|+..|
T Consensus 66 ~~~~~~l~~~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~~pp 144 (216)
T 3fb4_A 66 GIVHERLSKDDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVE-QEELMKRLTGRWICKTCGATYHTIFNPP 144 (216)
T ss_dssp HHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHSEEEETTTCCEEETTTBCC
T ss_pred HHHHHHHhcccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCccCCccccccCCC
Confidence 22233333 37889999754 22222322 2232 3578999997 69999999988
Q ss_pred ----------------ccCCHHHHHHHHHHHHHHhhcc-----CCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 224 ----------------KTESREELLVRIATAREEIKHV-----KNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 224 ----------------~~~~~~~i~~rl~~~~~e~~~~-----~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+++++.+.+|+..+..+.... ....++++|++++++++.++|.+++.+
T Consensus 145 ~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~~ 214 (216)
T 3fb4_A 145 AVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDLLGG 214 (216)
T ss_dssp SSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred CcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 4567788889888766543221 122356778889999999999999874
No 30
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.57 E-value=4.2e-14 Score=116.05 Aligned_cols=168 Identities=18% Similarity=0.324 Sum_probs=95.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
..+.+|+|+|++||||||+++.|++.++...+..++..+.. ..+...+ ..+...+..+.+.+...
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~~~------ 69 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDG--------EMIATMIKNGEIVPSIV------ 69 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTH--------HHHHHHHHTTCCCCHHH------
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHH--------HHHHHHHHCCCCCCHHH------
Confidence 34679999999999999999999987753333332322221 0111111 11111111111111100
Q ss_pred CCCHHHHHHHHH--cCCcEEEEecHH---HHHHHHHHhC---CCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHH
Q 023332 167 GIPKKQIREYMA--KGYDIILRVDIQ---GAQTLRRVLG---DSAVFVFLMAESETALVERLVERKT------ESREELL 232 (284)
Q Consensus 167 g~~~~~i~~~l~--~g~~vvld~~~~---~~~~l~~~~g---~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~ 232 (284)
....+...+. .|..+|+|+.+. ....+...+. ..+.+||+++| .+++.+|+..|.. +..+.+.
T Consensus 70 --~~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~ 146 (194)
T 1qf9_A 70 --TVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCP-EEVMTQRLLKRGESSGRSDDNIESIK 146 (194)
T ss_dssp --HHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHTTSCCTTCSHHHHH
T ss_pred --HHHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECC-HHHHHHHHHhccccCCCCCCCHHHHH
Confidence 0112222232 577899997542 2223322221 34578999997 6999999988853 2357777
Q ss_pred HHHHHHHHHh----hccCCcc-EEEECCCCCHHHHHHHHHHHHHH
Q 023332 233 VRIATAREEI----KHVKNFD-YVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 233 ~rl~~~~~e~----~~~~~~D-~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+|+..+..+. +....+| ++++|++++++++.++|.+++++
T Consensus 147 ~ri~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 147 KRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 8877654321 1222245 35566668999999999999875
No 31
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.57 E-value=5.2e-15 Score=125.65 Aligned_cols=174 Identities=15% Similarity=0.148 Sum_probs=107.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCc----eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc---hhhhhh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSL----RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE---LLEYAL 160 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~----~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 160 (284)
.+|.+|+|.|++||||||+++.|++.+... +..+ ..+|.|.... .| +.+...+.++. ..+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~-~g--------~~ir~~l~~~~~~~~~~~ll 92 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTR-LG--------ETLREILLNQPMDLETEALL 92 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSH-HH--------HHHHHHHHHSCCCHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCCh-HH--------HHHHHHHHcCCCCHHHHHHH
Confidence 569999999999999999999998877532 2222 2455553211 11 12222222221 112222
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh---CCCeEEEEEecCCHHHHHHHHHh
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL---GDSAVFVFLMAESETALVERLVE 222 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~---g~~~~~I~l~~p~~~~l~~Rl~~ 222 (284)
+..+.+....+.++..++.|..||+|-.. +.+..+.... ..++.+||+++|. +++.+|+.+
T Consensus 93 f~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~-e~~~~Ri~~ 171 (227)
T 3v9p_A 93 MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPP-QIASARRGA 171 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCS-SCGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHh
Confidence 33334443445577788999999999322 2233333221 3688999999985 999999998
Q ss_pred hcc----CC-HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 223 RKT----ES-REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 223 R~~----~~-~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
|+. +. ..++.+++...+..+.......++++|++++++++.++|.+.++.
T Consensus 172 R~~~dr~E~~~~ef~~rv~~~Y~~la~~~~~~~~vIDa~~s~eeV~~~I~~~l~~ 226 (227)
T 3v9p_A 172 VRMPDKFESESDAFFARTRAEYLRRAQEAPHRFVIVDSSEPIAQIRKQLEGVLAA 226 (227)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred ccCccchhhhhHHHHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence 852 12 245667776666554332334578889999999999999998875
No 32
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.57 E-value=9.9e-15 Score=123.04 Aligned_cols=175 Identities=17% Similarity=0.253 Sum_probs=106.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
..++++|+|+||+||||+|+++.|++.++..++...+..|.... .+..+ .......+..+.+.....+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~---~~t~l----g~~~~~~~~~G~lVpde~~~---- 94 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQ---SGSPK----GKELKAMMERGELVPLEVVL---- 94 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHT---TCCHH----HHHHHHHHHHTCCCCHHHHH----
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHH---cCCch----HHHHHHHHhcCCCCCHHHHH----
Confidence 56789999999999999999999999886444444443332110 01000 01111122222222211100
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHH---HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc------cCCHHHHHHHHHH
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQ---GAQTLRRVLGDSAVFVFLMAESETALVERLVERK------TESREELLVRIAT 237 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~---~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i~~rl~~ 237 (284)
....+.+.+....++.+|+|+.+. .+..+.........+|++++| .+++.+|+..|. +++++.+.+|++.
T Consensus 95 ~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~-~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~ 173 (217)
T 3umf_A 95 ALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVS-EEVMRKRLLKRAETSNRVDDNEETIVKRFRT 173 (217)
T ss_dssp HHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECC-HHHHHHHHSCC------CHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCC-HHHHHHHHhcccccCCCCCCCHHHHHHHHHH
Confidence 011122222333456799998663 333444444466788999997 599999997764 3456778899887
Q ss_pred HHHHhh----cc-CCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 238 AREEIK----HV-KNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 238 ~~~e~~----~~-~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
+..+.. +. ...-++.+|++++++++.++|.++|++.
T Consensus 174 Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k~ 214 (217)
T 3umf_A 174 FNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQKF 214 (217)
T ss_dssp HHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 665422 11 2334677899999999999999999764
No 33
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.57 E-value=1.8e-14 Score=119.82 Aligned_cols=161 Identities=19% Similarity=0.159 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+++|+|+|++||||||+++.|++.++...+. .+... ......... .+..+....... .
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~-~d~~~---------------~~~~~~~~~-~g~~~~~~~~~~-----~ 75 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE-GDALH---------------PPENIRKMS-EGIPLTDDDRWP-----W 75 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE-GGGGC---------------CHHHHHHHH-HTCCCCHHHHHH-----H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe-CCcCc---------------chhhHHHHh-cCCCCCchhhHH-----H
Confidence 6789999999999999999999887532222 11110 000000000 000000000000 0
Q ss_pred HHHHHHHHHcCCcEEEEecH---HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC--CHHHHHHHHHHHHHHhhc
Q 023332 170 KKQIREYMAKGYDIILRVDI---QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE--SREELLVRIATAREEIKH 244 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~--~~~~i~~rl~~~~~e~~~ 244 (284)
...+...+..|..+|+|+.+ .....+....+.++.+|++++| .+++.+|+.+|... ..+.+.. .....+.
T Consensus 76 ~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~----~~~~~~~ 150 (202)
T 3t61_A 76 LAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQT----QLETLED 150 (202)
T ss_dssp HHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHH----HHHHCCC
T ss_pred HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHH----HHHhcCC
Confidence 12344556788899999764 3333444443344688999997 69999999998643 3333322 2222221
Q ss_pred --cCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 245 --VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 245 --~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
....+++| |+++++++++++|.+++++......
T Consensus 151 ~~~~~~~~~I-d~~~~~~e~~~~I~~~l~~~~~~~~ 185 (202)
T 3t61_A 151 PRGEVRTVAV-DVAQPLAEIVREALAGLARLAENLY 185 (202)
T ss_dssp CTTSTTEEEE-ESSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEE-eCCCCHHHHHHHHHHHHHHhhhcce
Confidence 12345554 5559999999999999988654443
No 34
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=5.7e-14 Score=116.72 Aligned_cols=163 Identities=16% Similarity=0.121 Sum_probs=89.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
.+.++++|+|+|++||||||+++.|++.++...+..+..... ..|. +...+.. ... ...
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~-----~~g~-----~i~~~~~--------~~~---~~~ 79 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE-----RFHK-----TVGELFT--------ERG---EAG 79 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH-----HHTS-----CHHHHHH--------HHH---HHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH-----HhCC-----cHHHHHH--------hcC---hHH
Confidence 356688999999999999999999998875222211110000 0000 0000000 000 000
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHH-hhc------cCCHHHHH
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLV-ERK------TESREELL 232 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~-~R~------~~~~~~i~ 232 (284)
+......+-..+..+..+|++... ..+..+.. ...+||+++| .+++.+|+. .|. ..+.+++.
T Consensus 80 ~~~~e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~~l~~----~~~vi~L~~~-~e~l~~Rl~~~~~~Rp~~~~~~~~~~~ 154 (199)
T 3vaa_A 80 FRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFMNR----TGKTVFLNVH-PDVLFRRLRIAKQQRPILQGKEDDELM 154 (199)
T ss_dssp HHHHHHHHHHHHTTCSSEEEECCTTGGGSTTHHHHHHH----HSEEEEEECC-HHHHHHHHHHTGGGCGGGTTCCHHHHH
T ss_pred HHHHHHHHHHHHhhcCCcEEECCCcEEccHHHHHHHHc----CCEEEEEECC-HHHHHHHHhcCCCCCCCcCCCChhhHH
Confidence 001111222223355667777321 22223332 3688999997 699999998 342 23444555
Q ss_pred HHHHHHHHHhh-ccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 233 VRIATAREEIK-HVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 233 ~rl~~~~~e~~-~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+++...+.+.. ....+|++|.+++.++++++++|.+.+++..
T Consensus 155 ~~i~~~~~~r~~~y~~ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 155 DFIIQALEKRAPFYTQAQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 55555444221 1223898887775699999999999998753
No 35
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.55 E-value=1.7e-14 Score=119.04 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhh---hhhcccccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEY---ALVYGDYKG 167 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~yg 167 (284)
++|+|+|++||||||+++.|++.+...+.... .++.+... .+ ...+...+..+.+..+ ..+..+.+.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~-~~~~~~~~-----~~----g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 70 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVI-LKREPGGT-----ET----GEKIRKILLEEEVTPKAELFLFLASRNL 70 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EE-EEESSCSS-----HH----HHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEE-EeeCCCCC-----cH----HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999987621111111 12222111 10 0111111111111111 111111111
Q ss_pred CCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHH---HhCCCeEEEEEecCCHHHHHHHHHhhccCCHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDI---------------QGAQTLRR---VLGDSAVFVFLMAESETALVERLVERKTESRE 229 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~---~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~ 229 (284)
...+ +...+..|..|++|... ..+..+.. ....++.+|++++| .+++.+|+.+|+....+
T Consensus 71 ~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~ 148 (197)
T 2z0h_A 71 LVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKR 148 (197)
T ss_dssp HHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CCCCCH
T ss_pred HHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCC-HHHHHHHHhccCcccHH
Confidence 1122 44456788899998321 22222221 11246788999997 69999999998655545
Q ss_pred HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 230 ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 230 ~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
++.+++...+.++......+++++|++++++++.++|.+++++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 149 EFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 67777776665554434456777788899999999999988654
No 36
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.55 E-value=1.1e-14 Score=121.18 Aligned_cols=165 Identities=10% Similarity=0.076 Sum_probs=88.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
...+|++|+|+|+|||||||+++.|++.++. ..+..+..............+.+. ......+..
T Consensus 25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~-~~i~~d~~~~~~~~~~~~~g~~~~----------~~~~~~~~~----- 88 (200)
T 4eun_A 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGL-EFAEADAFHSPENIATMQRGIPLT----------DEDRWPWLR----- 88 (200)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHCC-EEEEGGGGSCHHHHHHHHTTCCCC----------HHHHHHHHH-----
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-eEEcccccccHHHHHHHhcCCCCC----------CcccccHHH-----
Confidence 4567999999999999999999999987742 222111110000000000000000 000111111
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHH--HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhh
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQ--GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIK 243 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~--~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~ 243 (284)
.....+...+..|..+|+|..+. ..............+||+++| .+++.+|+.+|...... .+.+.....+.+
T Consensus 89 --~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~--~~~l~~~~~~~~ 163 (200)
T 4eun_A 89 --SLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMP--ASLLQSQLATLE 163 (200)
T ss_dssp --HHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSC--GGGHHHHHHHCC
T ss_pred --HHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCC--HHHHHHHHHHhC
Confidence 11122334567788999998652 222222221234688999997 69999999988643211 112233333322
Q ss_pred c--cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 244 H--VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 244 ~--~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
. ...+|++|.+ ++++++++++|.+++..
T Consensus 164 ~~~~~~~~~~Id~-~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 164 ALEPDESGIVLDL-RQPPEQLIERALTWLDI 193 (200)
T ss_dssp CCCTTSCEEEEET-TSCHHHHHHHHHHHHCC
T ss_pred CCCCCCCeEEEEC-CCCHHHHHHHHHHHHHh
Confidence 2 2235666555 57999999999998864
No 37
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.55 E-value=4.9e-14 Score=124.03 Aligned_cols=146 Identities=21% Similarity=0.226 Sum_probs=106.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
...+.|+|+|| ||+|+.+.|...+| .|+.+++. +.+ +.++.|+
T Consensus 143 ~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~------------------~r~-----i~~~~fi---------- 186 (308)
T 3kfv_A 143 SFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV------------------SRT-----DSPSKII---------- 186 (308)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC-------------------------------CC----------
T ss_pred CCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc------------------ccc-----ccCCCee----------
Confidence 34566999999 69999999976655 55554331 110 2222332
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc-cCCHHHHHHHHHHHHH-Hhhc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK-TESREELLVRIATARE-EIKH 244 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~-~~~~~~i~~rl~~~~~-e~~~ 244 (284)
+.+.+++++++|+.||+|.+++++.+++... ..+++|||.+|+.++|++| +.|. .++++.+..+++++.+ +..+
T Consensus 187 --s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~-~~pi~IFI~PPS~eeL~~r-r~R~~~esee~~~r~~~aa~eiE~~~ 262 (308)
T 3kfv_A 187 --KLDTVRVIAEKDKHALLDVTPSAIERLNYVQ-YYPIVVFFIPESRPALKAL-RQWLAPASRRSTRRLYAQAQKLRKHS 262 (308)
T ss_dssp --CHHHHHHHHHTTCEEEECCCHHHHHHHHHTT-CCCEEEEEEESCHHHHHHH-HHHHSTTCCCCHHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHCCCcEEEEECHHHHHHHHhcC-CCCEEEEEeCCCHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHhh
Confidence 6678899999999999999999999998765 6779999999999999886 5554 3455555555555432 4445
Q ss_pred cCCccEEE-ECCCCCHHHHHHHHHHHHHHHHh
Q 023332 245 VKNFDYVV-VNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 245 ~~~~D~vi-vn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
...||++| +|++ ++++++++.++|.....
T Consensus 263 ~~~FD~vI~VNDd--le~A~~~L~~iI~~~~~ 292 (308)
T 3kfv_A 263 SHLFTATIPLNGT--SDTWYQELKAIIREQQT 292 (308)
T ss_dssp GGGCSEEEEECSS--STHHHHHHHHHHHHHTT
T ss_pred hccCcEEEEcCCC--HHHHHHHHHHHHHHhcC
Confidence 67899999 8987 99999999999988654
No 38
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.53 E-value=9.5e-14 Score=116.82 Aligned_cols=176 Identities=15% Similarity=0.141 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcc------cch---hhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK------NEL---LEYA 159 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~ 159 (284)
+|.+|+|.|++||||||+++.|++.+...+......+|.|..... | +.+...+.. ..+ .+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~-g--------~~ir~~l~~~~~~~~~~~~~~~e~l 72 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQL-A--------EKLRSLLLDIKSVGDEVITDKAEVL 72 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHH-H--------HHHHHHHHSTTTTTTCCCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHH-H--------HHHHHHHhcccccccccCChHHHHH
Confidence 389999999999999999999988765333312234555532110 1 111111110 000 0111
Q ss_pred hhcccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh---CCCeEEEEEecCCHHHHHHHHH
Q 023332 160 LVYGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL---GDSAVFVFLMAESETALVERLV 221 (284)
Q Consensus 160 ~~~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~---g~~~~~I~l~~p~~~~l~~Rl~ 221 (284)
-+....+....+.|+..+++|..||+|-.. ..+..+.... ..++.+||+++| .++..+|+.
T Consensus 73 L~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~-~e~~~~Ri~ 151 (213)
T 4tmk_A 73 MFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVT-PEVGLKRAR 151 (213)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHH
Confidence 111111111223467788999999999322 2233333221 357899999997 699999999
Q ss_pred hhccC--C---HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 222 ERKTE--S---REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 222 ~R~~~--~---~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
+|+.. . ..++.+++...+.++.... ..++++|++++++++.++|.+.+.....
T Consensus 152 ~R~~~dr~E~~~~~f~~rv~~~y~~la~~~-~~~~vIDa~~s~eeV~~~I~~~l~~~l~ 209 (213)
T 4tmk_A 152 ARGELDRIEQESFDFFNRTRARYLELAAQD-KSIHTIDATQPLEAVMDAIRTTVTHWVK 209 (213)
T ss_dssp HHSSCCTTTTSCHHHHHHHHHHHHHHHHTC-TTEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred hcCCccchhhhHHHHHHHHHHHHHHHHHHC-CcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 98531 1 2356677776665543322 4578889999999999999999987653
No 39
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.53 E-value=2.3e-14 Score=119.89 Aligned_cols=176 Identities=14% Similarity=0.155 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCC--------CCCCceeE----ecCHHHHHHhhccc-chh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPG--------EENGKDYY----FVSKEEFLTMIDKN-ELL 156 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~--------~~~~~~~~----~~~~~~~~~~~~~~-~~~ 156 (284)
.-|+|+|..||||||++++|++ ++...+..+...+.. ..+ ...|..+. .+++..+...+.++ ..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~ 88 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDAR 88 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHH
Confidence 3599999999999999999988 543333333322220 011 01233322 25666665554322 111
Q ss_pred hhhh--hcccccCCCHHHHHHHHHc--CCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHH
Q 023332 157 EYAL--VYGDYKGIPKKQIREYMAK--GYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERKTESREEL 231 (284)
Q Consensus 157 ~~~~--~~~~~yg~~~~~i~~~l~~--g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i 231 (284)
...+ ++..+ .+.+.+.++. +..||+|+..-.. ..+...+ +.+|+|++| .+++.+|+.+|.+.+.+++
T Consensus 89 ~~L~~i~HP~I----~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~~~---D~vi~V~ap-~e~r~~Rl~~Rdg~s~eea 160 (210)
T 4i1u_A 89 RRLEAITHPLI----RAETEREARDAQGPYVIFVVPLLVESRNWKARC---DRVLVVDCP-VDTQIARVMQRNGFTREQV 160 (210)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHTCCSSSEEEECTTCTTCHHHHHHC---SEEEEEECC-HHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHhhHHH----HHHHHHHHHhcCCCEEEEEEecccccCCccccC---CeEEEEECC-HHHHHHHHHhcCCCCHHHH
Confidence 1111 11111 1222332322 3468888865332 3333333 688999997 6999999999988899999
Q ss_pred HHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 232 LVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 232 ~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
.+++..+....++...+|+||.|+.++++++.+++..+++....
T Consensus 161 ~~ri~~Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 161 EAIIARQATREARLAAADDVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp HHHHHHSCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99988776555556788999876536899999999999987644
No 40
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.53 E-value=1.5e-13 Score=111.44 Aligned_cols=160 Identities=17% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-C-CCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-P-GEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
.+|++|+|+|+|||||||+++.|++.++. ..+..+...... . ....|.. + ... ....+.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~-~~i~~d~~~~~~~~~~~~~g~~--~-~~~---------~~~~~~~~---- 68 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHA-AFLDGDFLHPRRNIEKMASGEP--L-NDD---------DRKPWLQA---- 68 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTC-EEEEGGGGCCHHHHHHHHTTCC--C-CHH---------HHHHHHHH----
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCc-EEEeCccccchHHHHHhhcCcC--C-Ccc---------ccccHHHH----
Confidence 55899999999999999999999987642 222221111000 0 0000000 0 000 00011110
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC--HHHHHHHHHHHHHH
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES--REELLVRIATAREE 241 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~--~~~i~~rl~~~~~e 241 (284)
....+...+..|..+|+|... ..........+.+..+||+++| .+++.+|+.+|.... ...+..+ ...
T Consensus 69 ---~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~~~~R~~~R~~~~~~~~~~~~~----~~~ 140 (175)
T 1knq_A 69 ---LNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGD-FDVIESRLKARKGHFFKTQMLVTQ----FET 140 (175)
T ss_dssp ---HHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECC-HHHHHHHHHTSTTCCCCHHHHHHH----HHH
T ss_pred ---HHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECC-HHHHHHHHHhccCCCCchHHHHHH----HHh
Confidence 112334455678889999654 2222222223345588999997 699999999986432 2223222 222
Q ss_pred hhc---cCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 242 IKH---VKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 242 ~~~---~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
++. ...+|++|.++ +++++++++|.+.+...
T Consensus 141 ~~~~~~~~~~~~~Id~~-~~~~~~~~~i~~~l~~~ 174 (175)
T 1knq_A 141 LQEPGADETDVLVVDID-QPLEGVVASTIEVIKKG 174 (175)
T ss_dssp CCCCCTTCTTEEEEECS-SCHHHHHHHHHHHHHC-
T ss_pred hhCcccCCCCeEEEeCC-CCHHHHHHHHHHHHhcC
Confidence 222 23456666554 89999999999988643
No 41
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.53 E-value=9.4e-14 Score=112.87 Aligned_cols=160 Identities=13% Similarity=0.116 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeE-eeeccccCCCC----CCCCceeEe----cCHHHHHHhhcccchhhhhh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFV-VTATSRPMRPG----EENGKDYYF----VSKEEFLTMIDKNELLEYAL 160 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~-~~~~~r~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 160 (284)
|++|+|+|+|||||||+++.|++.++...+. ..+..+....+ +..|..+.. .....+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 69 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFR------------- 69 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHH-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHH-------------
Confidence 6789999999999999999999987532222 12222111111 111111110 0000010
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEecHH---H-HHHHHHHh-CCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVDIQ---G-AQTLRRVL-GDSAVFVFLMAESETALVERLVERKTESREELLVRI 235 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~~~---~-~~~l~~~~-g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl 235 (284)
..++.....+...+..|..||+++.+. . ...+.+.+ +....+||+.+| .+++.+|+.+|..........
T Consensus 70 ---~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~r~~~~~~~~~~-- 143 (178)
T 1qhx_A 70 ---ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAEGRETARGDRVAGMAAK-- 143 (178)
T ss_dssp ---HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHHHHTSSSCTTHHHH--
T ss_pred ---HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHHHHHHhhCCcccchhhh--
Confidence 111112234556678888999998652 1 23444444 234577889986 799999999987544321111
Q ss_pred HHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 236 ATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
....+.....+|++|.++..++++++++|.+.+
T Consensus 144 --~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 144 --QAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp --HTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred --hchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 111121123488888766568999999987654
No 42
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.53 E-value=1.8e-14 Score=126.74 Aligned_cols=172 Identities=13% Similarity=0.199 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhh-hhccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA-LVYGD 164 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 164 (284)
...|.+|+|+|||||||||+++.|++.++ ....+..+..|....+ +..+.. .+.++. .+.++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~--------------~~~~~~--~~~~~a~~~~~~ 93 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPN--------------FDELVK--LYEKDVVKHVTP 93 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTT--------------HHHHHH--HHGGGCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchh--------------hHHHHH--HccchhhhhhhH
Confidence 35689999999999999999999988764 2333333344443322 111110 012211 22234
Q ss_pred ccCC-CHHHHHHHHHcCCcEEEEecHHHHH---HHH---HHhCCCeEEEEEecCCHHHH----HHHHHhhc-------cC
Q 023332 165 YKGI-PKKQIREYMAKGYDIILRVDIQGAQ---TLR---RVLGDSAVFVFLMAESETAL----VERLVERK-------TE 226 (284)
Q Consensus 165 ~yg~-~~~~i~~~l~~g~~vvld~~~~~~~---~l~---~~~g~~~~~I~l~~p~~~~l----~~Rl~~R~-------~~ 226 (284)
.|+. ....++..++.|.+||+|+++.... ++. ...|....++++.+| .+++ .+|+..|. +.
T Consensus 94 ~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p-~~~~~l~~~~Rl~~R~~~g~l~~R~ 172 (287)
T 1gvn_B 94 YSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVP-KINSYLGTIERYETMYADDPMTARA 172 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCC-HHHHHHHHHHHHHHHHHHCTTTCCC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 4444 2345677888999999998874322 332 223556566778887 5777 78876441 22
Q ss_pred ----CHHHHHHHHHHHHHHhhccCCccEEEECCCCC------HHHHHHHHHHHHHHHHh
Q 023332 227 ----SREELLVRIATAREEIKHVKNFDYVVVNAEGK------LDVAVKLVESIIDAEKA 275 (284)
Q Consensus 227 ----~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~------~e~~~~~i~~~i~~~~~ 275 (284)
..+.+..++..+..++.....+|++++|++.. .+.....+.++|..+..
T Consensus 173 ~~~e~~~~i~~rl~~a~~el~~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~ 231 (287)
T 1gvn_B 173 TPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN 231 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHc
Confidence 23456677777777777677889888877521 23333455555555544
No 43
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.53 E-value=4.5e-13 Score=107.94 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=87.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-ccchhhhhhhcccccCCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-KNELLEYALVYGDYKGIP 169 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~yg~~ 169 (284)
++|+|+|++||||||+++.|++.++. .++..+. +..... ...++
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~-~~i~~d~---------------------~~~~~~~~~~~~------------- 46 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKY-PIIKGSS---------------------FELAKSGNEKLF------------- 46 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCC-CEEECCC---------------------HHHHTTCHHHHH-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC-eeecCcc---------------------cccchhHHHHHH-------------
Confidence 47999999999999999999988752 2211110 000000 00000
Q ss_pred HHHHHHHHHcCCcEEEEecH------------------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCH-HH
Q 023332 170 KKQIREYMAKGYDIILRVDI------------------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESR-EE 230 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~------------------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~-~~ 230 (284)
.....+..|..+++|... .....+...+..++.+||+++| .+++.+|+.+|.+... .+
T Consensus 47 --~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~~ 123 (173)
T 3kb2_A 47 --EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEGK 123 (173)
T ss_dssp --HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCHH
T ss_pred --HHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhhh
Confidence 011234556666666322 1222233333356789999997 6999999998754322 23
Q ss_pred HHHHHHHHHHHhhccCCccEEEECCC-CCHHHHHHHHHHHHHHHHhh
Q 023332 231 LLVRIATAREEIKHVKNFDYVVVNAE-GKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 231 i~~rl~~~~~e~~~~~~~D~vivn~~-~~~e~~~~~i~~~i~~~~~~ 276 (284)
..+++...+.+.........+++|++ .++++++++|.+.++....+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ev~~~I~~~~~~~~~~ 170 (173)
T 3kb2_A 124 DIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFLVELEHHH 170 (173)
T ss_dssp HHHHHHHHHHHHHHTCSSCEEEEETTTSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHhCCCcc
Confidence 44555554444333223345556665 49999999999999886543
No 44
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=99.53 E-value=4.2e-14 Score=125.09 Aligned_cols=176 Identities=16% Similarity=0.147 Sum_probs=114.5
Q ss_pred CCCeEEEEEcCCCCCHHH-------HHHHHHhccCCceeEeeeccccCCCCCCCCcee--EecCHHHHHHhhcccchhhh
Q 023332 88 PNPLIIVISGPSGVGKDA-------LIKKLRESRDSLRFVVTATSRPMRPGEENGKDY--YFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKST-------l~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 158 (284)
+.-+-|+|+||++.|=-+ |...|..++++.... +|.....+..+..+ .+.....+........+++.
T Consensus 140 p~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~----tR~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev 215 (337)
T 4dey_A 140 PSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISI----TRVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEV 215 (337)
T ss_dssp CSSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEE----EEECSCGGGC-------------------CCCHHHH
T ss_pred CCCCceEEECCccccchhHHHHHHHHHHhhHHhcCCccce----EeecchhhhcchhhhhcccchhhhcccccccchHHH
Confidence 344559999999999774 555565555532211 12222222222221 12233333333334444433
Q ss_pred hhhcccccCCCHHHHHHHHHcCCcEEEEecHH-HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHH
Q 023332 159 ALVYGDYKGIPKKQIREYMAKGYDIILRVDIQ-GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIAT 237 (284)
Q Consensus 159 ~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~-~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~ 237 (284)
. ...+.+.++.+.|+.||+|.+++ ++.++++.+ ..+++|||.+|+.++|.+||+.|+....+.+..+++.
T Consensus 216 ~--------seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~-~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ 286 (337)
T 4dey_A 216 Q--------SEIERIFELARTLQLVVLDADTINHPAQLSKTS-LAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVA 286 (337)
T ss_dssp H--------HHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSS-CCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHH
T ss_pred H--------hHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcC-CCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 2 12345555666899999999998 999998876 7889999999999999999999987555666666666
Q ss_pred HHHHhhc-cCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhh
Q 023332 238 AREEIKH-VKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278 (284)
Q Consensus 238 ~~~e~~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~ 278 (284)
+..++.. ...||++|+|++ ++++++++.++|..+....|
T Consensus 287 ae~E~~~~~~~FDyvIVNDd--Le~A~~~L~~iI~~~~~~~h 326 (337)
T 4dey_A 287 ADKLAQCPPELFDVILDENQ--LEDACEHLADYLEAYWKATH 326 (337)
T ss_dssp HHHHHHSCGGGCSEEECCSS--HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhhCcccCCEEEECCC--HHHHHHHHHHHHHHHHhccC
Confidence 6655554 688999999987 99999999999998766554
No 45
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.51 E-value=2.7e-13 Score=112.97 Aligned_cols=172 Identities=12% Similarity=0.127 Sum_probs=94.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhh---hhhcccc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEY---ALVYGDY 165 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 165 (284)
+|++|+|+|++||||||+++.|++.++..+.+.. .+.+ . +..+ ...+........+-+. ..+....
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~--~~~~-~----~~~i----~~~~~~~~~~~~~~~~~~~~~~~~~r 71 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL--TEWN-S----SDWI----HDIIKEAKKKDLLTPLTFSLIHATDF 71 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE--EETT-C----CCHH----HHHHHHHTTTSCCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE--ecCC-c----HHHH----HHHHhccccccCCCHHHHHHHHHHHH
Confidence 4789999999999999999999987753221111 1111 1 1100 0011100000000000 0000000
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecHHH--------------HHHHHHHhCCCeEEEEEecCCHHHHHHHHH-hhcc-CC--
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDIQG--------------AQTLRRVLGDSAVFVFLMAESETALVERLV-ERKT-ES-- 227 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~~~--------------~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~-~R~~-~~-- 227 (284)
+....+.+...+..|..||+|..+.. +..+.......+.+|++++| .+++.+|+. +|.. ..
T Consensus 72 ~~~~~~~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~~R~~~~~~~ 150 (213)
T 2plr_A 72 SDRYERYILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVS-PDIALERIKKSKRKIKPQE 150 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECC-HHHHHHHHHHTTCCCCTTT
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHhcccccccccc
Confidence 11111233456678899999986522 12222222235678999997 699999998 7762 11
Q ss_pred ------------H--HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 228 ------------R--EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 228 ------------~--~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
+ +.+.+++..++.+.... +.++++|++++++++.++|.+++....
T Consensus 151 ~g~~~~~~~d~~e~~~~~~~r~~~~~~~~~~~--~~~~~Id~~~~~e~v~~~I~~~l~~~~ 209 (213)
T 2plr_A 151 AGADIFPGLSPEEGFLKYQGLITEVYDKLVKD--ENFIVIDGTKTPKEIQIQIRKFVGELI 209 (213)
T ss_dssp TTTTTCTTSCHHHHHHHHHHHHHHHHHHHTTT--TTCEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHhh--CCEEEEECCCCHHHHHHHHHHHHHHHh
Confidence 1 34555555555443322 245666777899999999999997653
No 46
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.51 E-value=2.6e-14 Score=125.36 Aligned_cols=187 Identities=16% Similarity=0.184 Sum_probs=101.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeecccc-CCCCC--------CCCceeE----ecCHHHHHHhhccc-
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP-MRPGE--------ENGKDYY----FVSKEEFLTMIDKN- 153 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~-~~~~~--------~~~~~~~----~~~~~~~~~~~~~~- 153 (284)
..+.+|+|+|++||||||+++.|++ ++...+..+...+. ...+. ..|..+. .++...+...+...
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~ 151 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNK 151 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCH
Confidence 4578999999999999999999995 43222222221111 00000 0011110 12333322111111
Q ss_pred chhhhhh--hcccccCCCHHHHHHHHHcC-CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHH
Q 023332 154 ELLEYAL--VYGDYKGIPKKQIREYMAKG-YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREE 230 (284)
Q Consensus 154 ~~~~~~~--~~~~~yg~~~~~i~~~l~~g-~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~ 230 (284)
..+.+.. .+..++....+.+......+ ..||+|+.......+.. ..+.+|||++| .+++.+|+.+|...+.+.
T Consensus 152 ~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~---~~d~vI~l~a~-~ev~~~Rl~~R~g~s~e~ 227 (281)
T 2f6r_A 152 KQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQS---MVHEVWTVVIP-ETEAVRRIVERDGLSEAA 227 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGG---GCSEEEEEECC-HHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHH---hCCEEEEEcCC-HHHHHHHHHHcCCCCHHH
Confidence 1111100 01111111112233333343 57899986522111111 23588999997 699999999997667777
Q ss_pred HHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 023332 231 LLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQQR 280 (284)
Q Consensus 231 i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~ 280 (284)
+..++..+....++...+|++|.|+ ++++++.++|.+++........++
T Consensus 228 ~~~ri~~q~~~~~~~~~AD~vIdn~-~s~eel~~~I~~~l~~l~~~~~~~ 276 (281)
T 2f6r_A 228 AQSRLQSQMSGQQLVEQSNVVLSTL-WESHVTQSQVEKAWNLLQKRLPKA 276 (281)
T ss_dssp HHHHHHTSCCHHHHHHTCSEEEECS-SCHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHcCChHhhHhhCCEEEECC-CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777766533222334678887665 799999999999998876555443
No 47
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.50 E-value=2.4e-14 Score=121.17 Aligned_cols=178 Identities=13% Similarity=0.041 Sum_probs=97.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcc-cchh---hhhhh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK-NELL---EYALV 161 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~ 161 (284)
..+|.+|+|.|++||||||+++.|++.+.. .+..+..++|.|..... | +.+...+.+ ..+- +..-+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~-g--------~~ir~~l~~~~~~~~~~e~llf 88 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL-N--------ESVRNLLFKAQGLDSLSELLFF 88 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH-H--------HHHHHHHHTCSSCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH-H--------HHHHHHHhCCCCCCHHHHHHHH
Confidence 456999999999999999999999887654 33333332455532111 1 111111111 0010 11111
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh--CCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 162 YGDYKGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL--GDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 162 ~~~~yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~--g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
..+.+....+.|+..++.|..||+|-.. +.+..+.... ..++.+||+++| .++..+|+ .|+
T Consensus 89 ~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~-~e~~~~Ri-~rd 166 (223)
T 3ld9_A 89 IAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVD-INESLSRS-CKN 166 (223)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCC-HHHHHHHh-ccC
Confidence 1222222233466788999999999322 2333443333 257899999998 58999998 555
Q ss_pred cCCH--HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHhh
Q 023332 225 TESR--EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 225 ~~~~--~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
+... .++.+++...+.++.......++++|++++++++ ++|.+.+++....
T Consensus 167 r~E~~~~e~~~rv~~~y~~la~~~~~~~~vIDa~~sieeV-~~I~~~l~~~lg~ 219 (223)
T 3ld9_A 167 GYEFADMEFYYRVRDGFYDIAKKNPHRCHVITDKSETYDI-DDINFVHLEVIKV 219 (223)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCTTTEEEEESSCSSSCC-CHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCHHHH-HHHHHHHHHHHhh
Confidence 4322 4566777777665543333457788888999999 9999999876543
No 48
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.50 E-value=3.1e-13 Score=112.13 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCc-eeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-chh---hhhhhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSL-RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-ELL---EYALVYG 163 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~ 163 (284)
+|++|+|+|++||||||+++.|++.++++ ........+....+ +.+...+..+ .+- ....+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g------------~~i~~~~~~~~~~~~~~~~~l~~~ 70 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTG------------KMIDDYLTRKKTYNDHIVNLLFCA 70 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHH------------HHHHHHHTSSCCCCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHH------------HHHHHHHhcCCCCCHHHHHHHHHH
Confidence 58899999999999999999999987323 22222111100000 0011111000 000 0000001
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHH--------------HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCH-
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQ--------------GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESR- 228 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~--------------~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~- 228 (284)
+.+.. .+.+...+..|..||+|.... .+..+......++.+||+++| .+++.+ .|+.+..
T Consensus 71 ~r~~~-~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~---~R~~d~~e 145 (204)
T 2v54_A 71 NRWEF-ASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESG-SKEINR---NVGEEIYE 145 (204)
T ss_dssp HHHTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCC-HHHHTT---CCSSSTTC
T ss_pred HHHHH-HHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCC-HHHHHh---hcCccccc
Confidence 11111 235566778889999995432 111121111245688999997 577665 4543322
Q ss_pred -HHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 229 -EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 229 -~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
..+.+++..++.+.......+++++|++++++++.++|.+++.....
T Consensus 146 ~~~~~~rl~~~y~~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l~~~l~ 193 (204)
T 2v54_A 146 DVTFQQKVLQEYKKMIEEGDIHWQIISSEFEEDVKKELIKNIVIEAIH 193 (204)
T ss_dssp CSHHHHHHHHHHHHHHTTCSSCEEEECTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 26677777766655433345677788889999999999999987644
No 49
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.50 E-value=8.1e-14 Score=114.55 Aligned_cols=173 Identities=19% Similarity=0.258 Sum_probs=92.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+|.+|+|+|++||||||+++.|++.++...+..++..+..... .+..+ ...+...+..+...........+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~--~~~~~----~~~~~~~~~~g~~~~~~~~~~~l--- 72 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKN--PDSQY----GELIEKYIKEGKIVPVEITISLL--- 72 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHC--TTSTT----HHHHHHHHHTTCCCCHHHHHHHH---
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhc--cCChH----HHHHHHHHHCCCcCCHHHHHHHH---
Confidence 3789999999999999999999987753222222222211000 00000 01111111111111000000000
Q ss_pred CHHHHHHH---HHcCCcEEEEecHHH---HHHHHHHhC---CCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHH
Q 023332 169 PKKQIREY---MAKGYDIILRVDIQG---AQTLRRVLG---DSAVFVFLMAESETALVERLVERKT------ESREELLV 233 (284)
Q Consensus 169 ~~~~i~~~---l~~g~~vvld~~~~~---~~~l~~~~g---~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~ 233 (284)
...+... +..+..+|+|+.+.. ...+...+. ..+.+||+++| .+++.+|+.+|.. .+.+.+.+
T Consensus 73 -~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~ 150 (196)
T 1tev_A 73 -KREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCN-NEICIERCLERGKSSGRSDDNRESLEK 150 (196)
T ss_dssp -HHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECC-HHHHHHHHHHHHHTSSCCSCCHHHHHH
T ss_pred -HHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECC-HHHHHHHHHcccccCCCCCCCHHHHHH
Confidence 0111121 234778999976522 222222221 24578999997 6999999987742 24566666
Q ss_pred HHHHHHHHhh-----ccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 234 RIATAREEIK-----HVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 234 rl~~~~~e~~-----~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
++..+..... +....+++++|++++++++.++|.+++.+
T Consensus 151 ~~~~~~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 151 RIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 6665544322 12345676677779999999999998865
No 50
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.50 E-value=7.5e-14 Score=114.27 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..|++|+|+|++||||||+++.|++.++...+..++..+.... .+..+ ...+...+..+...+...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~---~~~~~----~~~i~~~~~~g~~~~~~~------- 67 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVA---RGTPL----GERVRPIMERGDLVPDDL------- 67 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHH---TTCHH----HHHHHHHHHTTCCCCHHH-------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHH---cCChH----HHHHHHHHHcCCcCCHHH-------
Confidence 3588999999999999999999998765222222222221100 00000 001111111111111100
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHH------HHHHHHhCC-CeEEEEEecCCHHHHHHHHHhhc------cCCHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGA------QTLRRVLGD-SAVFVFLMAESETALVERLVERK------TESREELLVR 234 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~------~~l~~~~g~-~~~~I~l~~p~~~~l~~Rl~~R~------~~~~~~i~~r 234 (284)
....+.+.+..+ +|+|+.+... ..+....|. .+.+||+++| .+++.+|+..|. ..+.+.+.+|
T Consensus 68 -~~~~~~~~l~~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~r~~~~~~~~~~r 143 (186)
T 3cm0_A 68 -ILELIREELAER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVP-EEELVRRILRRAELEGRSDDNEETVRRR 143 (186)
T ss_dssp -HHHHHHHHCCSE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECC-HHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred -HHHHHHHHhcCC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCC-HHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence 011223333333 8899754221 122222222 4578999997 699999998874 2456777777
Q ss_pred HHHHHHHh----hccCCcc-EEEECCCCCHHHHHHHHHHHH
Q 023332 235 IATAREEI----KHVKNFD-YVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 235 l~~~~~e~----~~~~~~D-~vivn~~~~~e~~~~~i~~~i 270 (284)
+..+.... ++....+ ++++|++++++++.++|.+.+
T Consensus 144 ~~~~~~~~~~l~~~~~~~~~~~~id~~~~~~~v~~~i~~~l 184 (186)
T 3cm0_A 144 LEVYREKTEPLVGYYEARGVLKRVDGLGTPDEVYARIRAAL 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHh
Confidence 77654331 1111122 455666689999999998876
No 51
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.50 E-value=7.6e-14 Score=116.52 Aligned_cols=174 Identities=14% Similarity=0.048 Sum_probs=96.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-chh---hhhhhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-ELL---EYALVY 162 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~ 162 (284)
+.+|++|+|+|++||||||+++.|++.++..++.. +..+.+..+...+. .+...+..+ .+- ....+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~-~~~~~~~~~~~~g~--------~i~~~~~~~~~~~~~~~~~~~~ 77 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV-KHLYFPNRETGIGQ--------IISKYLKMENSMSNETIHLLFS 77 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE-EEEESSCTTSHHHH--------HHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE-EEEecCCCCCcHHH--------HHHHHHhcCCCCCHHHHHHHHH
Confidence 45689999999999999999999998765322222 23333321111010 011111100 000 000010
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecHHH---HH--------HHH----HHhCCCeEEEEEecCCHHHHHHHHHhhc-cC
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDIQG---AQ--------TLR----RVLGDSAVFVFLMAESETALVERLVERK-TE 226 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~~~---~~--------~l~----~~~g~~~~~I~l~~p~~~~l~~Rl~~R~-~~ 226 (284)
...+.. ...+...+..|..||+|..+.. +. .+. .....++.+||+++|. +++.+|+..|. +.
T Consensus 78 ~~~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~r~~r~ 155 (212)
T 2wwf_A 78 ANRWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPP-NYAQNRSDYGEEIY 155 (212)
T ss_dssp HHHHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCT-TGGGGSTTTTSSTT
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCH-HHHHHhhccCcccc
Confidence 011111 1245666778999999976521 11 111 1112456889999985 88999987652 22
Q ss_pred CHHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 227 SREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 227 ~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..+.+.+++..++.+... ....+++|+++++++++++|.+++...
T Consensus 156 ~~~~~~~~~~~~~~~~~~--~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 156 EKVETQKKIYETYKHFAH--EDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp CSHHHHHHHHHHGGGGTT--CTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHhc--cCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 335566666655444332 333455566689999999999988654
No 52
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.49 E-value=9e-14 Score=115.49 Aligned_cols=167 Identities=19% Similarity=0.243 Sum_probs=93.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY 165 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (284)
...|++|+|+|++||||||+++.|++.++...+..++..++. ..+...+ ..+...+..+.+.+....
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g--------~~i~~~~~~g~~~~~~~~---- 84 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLG--------VEAKRYLDAGDLVPSDLT---- 84 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHH--------HHHHHHHHHTCCCCHHHH----
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHH--------HHHHHHHHcCCcccHHHH----
Confidence 355889999999999999999999987753333322322220 0000000 011111111111111000
Q ss_pred cCCCHHHHHHH---HHcCCcEEEEecHHH------HHHHHHHhCC-CeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHH
Q 023332 166 KGIPKKQIREY---MAKGYDIILRVDIQG------AQTLRRVLGD-SAVFVFLMAESETALVERLVERKT--ESREELLV 233 (284)
Q Consensus 166 yg~~~~~i~~~---l~~g~~vvld~~~~~------~~~l~~~~g~-~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~ 233 (284)
...+.+. ...|..+|+|+.+.. +..+....|. .+.+|++++| .+++.+|+.+|++ ++.+.+.+
T Consensus 85 ----~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~r~~~~~e~~~~ 159 (201)
T 2cdn_A 85 ----NELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVS-EEVLLERLKGRGRADDTDDVILN 159 (201)
T ss_dssp ----HHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHHHCCTTCSHHHHHH
T ss_pred ----HHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCCCCHHHHHH
Confidence 0111111 134678999974421 1222222222 4588999997 6999999998864 45677777
Q ss_pred HHHHHHHHh----hccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 234 RIATAREEI----KHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 234 rl~~~~~e~----~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
++..+.... ++.... .+++|++++++++.++|.++++
T Consensus 160 r~~~~~~~~~~~~~~~~~~-~~~Id~~~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 160 RMKVYRDETAPLLEYYRDQ-LKTVDAVGTMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHTTTHHHHTTTT-EEEEECCSCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHhcCc-EEEEeCCCCHHHHHHHHHHHHc
Confidence 777665432 122233 4445666899999999988763
No 53
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.49 E-value=3.2e-13 Score=112.96 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=100.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc-h---hhhhhhcccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE-L---LEYALVYGDY 165 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~ 165 (284)
|++|+|.|+.||||||+++.|++.+.. +.. ...+|.|.... .| +.+...+.++. + .+..-+....
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~-v~~~~eP~~t~-~g--------~~ir~~l~~~~~~~~~~~~lLf~a~R 70 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYD-VIMTREPGGVP-TG--------EEIRKIVLEGNDMDIRTEAMLFAASR 70 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSC-EEEEESSTTCH-HH--------HHHHHHHHSSCCCCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCC-EEEeeCCCCCh-HH--------HHHHHHHhcccCCCHHHHHHHHHHHH
Confidence 689999999999999999999887642 111 12233342111 00 11111111110 0 0000011111
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHH---hCCCeEEEEEecCCHHHHHHHHHhhccCC
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRV---LGDSAVFVFLMAESETALVERLVERKTES 227 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~---~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~ 227 (284)
+......+...++.|..||+|-.. ..+..+... ...++.+||+++| .++..+|+.+|+...
T Consensus 71 ~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~Ri~~r~~~~ 149 (205)
T 4hlc_A 71 REHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVS-AEVGRERIIKNSRDQ 149 (205)
T ss_dssp HHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCC-HHHHHHHHHhcCCcc
Confidence 111223466788999999999432 222333322 1257899999997 699999998886432
Q ss_pred ------HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 228 ------REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 228 ------~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
..++.+++...+.++.......++++|+++++|++.++|.+.|.+...
T Consensus 150 dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~~~IDa~~~~e~V~~~i~~~i~~~L~ 203 (205)
T 4hlc_A 150 NRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLE 203 (205)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHSCCTTEEEEETTSCHHHHHHHHHHHHHHHHC
T ss_pred cchhccCHHHHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHh
Confidence 124556666666555433334588899999999999999999887643
No 54
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.49 E-value=1.7e-13 Score=112.66 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=69.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhh-hhccccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA-LVYGDYK 166 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y 166 (284)
..|++|+|+|++||||||+++.|++.++. .++..+..+. .+........ .++. .+....|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~-~~i~~D~~~~-----------------~~~~~~~~~~-~~~~~~~~~~~~ 63 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRL-PLLSKDAFKE-----------------VMFDGLGWSD-REWSRRVGATAI 63 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTC-CEEEHHHHHH-----------------HHHHHHCCCS-HHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC-eEecHHHHHH-----------------HHHHhcCccc-hHHHHHhhHHHH
Confidence 46889999999999999999999987642 2221111111 0000000000 0000 0111112
Q ss_pred CCCHHHHHHHHHcCCcEEEEecHH------HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 167 GIPKKQIREYMAKGYDIILRVDIQ------GAQTLRRVLGDSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 167 g~~~~~i~~~l~~g~~vvld~~~~------~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
....+.+...++.|..||+|+.+. .+..+....+.++.+||+++| .+++.+|+.+|..
T Consensus 64 ~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~-~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 64 MMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS-GDVLVERILSRIA 127 (193)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHhcC
Confidence 222334566778899999998772 122244444456788999997 6999999988864
No 55
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.48 E-value=1.1e-13 Score=115.79 Aligned_cols=166 Identities=19% Similarity=0.265 Sum_probs=102.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+||+||||+|+++.|++.++..++...+..|.... .+..+ .......+..+.+..... ..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~---~~t~l----g~~~~~~~~~G~lvpd~i--------v~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQ---KGTPL----GKKAKEYMERGELVPDDL--------II 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH---HTCHH----HHHHHHHHHHTCCCCHHH--------HH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHH---hcChh----hhhHHHHHhcCCcCCHHH--------HH
Confidence 5789999999999999999999887555544443332100 00000 001111122222222111 12
Q ss_pred HHHHHHHHcCCcEEEEecHHHHHH------HHHHhC-CCeEEEEEecCCHHHHHHHHHhh--------------------
Q 023332 171 KQIREYMAKGYDIILRVDIQGAQT------LRRVLG-DSAVFVFLMAESETALVERLVER-------------------- 223 (284)
Q Consensus 171 ~~i~~~l~~g~~vvld~~~~~~~~------l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R-------------------- 223 (284)
..+.+.+.....+|+|+.+....+ .....+ ....+|++++| .+++.+|+..|
T Consensus 66 ~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g 144 (206)
T 3sr0_A 66 ALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNPPPPG 144 (206)
T ss_dssp HHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCCCTT
T ss_pred HHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccCCCCC
Confidence 234445556667999987632222 222223 34578999998 59999999876
Q ss_pred ------ccCCHHHHHHHHHHHHHHhhc-----cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 224 ------KTESREELLVRIATAREEIKH-----VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 224 ------~~~~~~~i~~rl~~~~~e~~~-----~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+++++.+.+|++.+..+... ....-++.+|++++++++.++|.++|..
T Consensus 145 ~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 145 VKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIGD 204 (206)
T ss_dssp CCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC-
T ss_pred ceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 345778899999987765321 1233467789999999999999999864
No 56
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.45 E-value=3.7e-13 Score=113.38 Aligned_cols=175 Identities=10% Similarity=0.070 Sum_probs=108.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc-----chhhhhhhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN-----ELLEYALVY 162 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 162 (284)
.+|.+|+|.|++||||||+++.|++.+... ...+|.|..+...|. .+...+.+. ...+..-+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~~----~~~~~ep~~~t~~g~--------~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQPN----CKLLKFPERSTRIGG--------LINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCSS----EEEEESSCTTSHHHH--------HHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccc----ceEEEecCCCChHHH--------HHHHHHHhcccCCCHHHHHHHHH
Confidence 468999999999999999999999987631 122344421211111 111111111 011112222
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH------HH--------HHHHHH---HhCCCeEEEEE-ecCCHHHHHHHHHhhc
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI------QG--------AQTLRR---VLGDSAVFVFL-MAESETALVERLVERK 224 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~------~~--------~~~l~~---~~g~~~~~I~l-~~p~~~~l~~Rl~~R~ 224 (284)
.+.+. ..+.|...++.|..||+|-.. ++ +..+.. ....++.+||+ +.|. ++..+|+..|.
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~p-e~~~~R~~~~~ 148 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDV-DNNAEKSGFGD 148 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCC-SCGGGCCSSSC
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCH-HHHHHHhccCc
Confidence 33333 345788889999999999433 11 112221 11247889999 9985 88888876442
Q ss_pred c-CCHHHHHHHHHHHHHHhhcc----CCccEEEEC-CCCCHHHHHHHHHHHHHHHHhh
Q 023332 225 T-ESREELLVRIATAREEIKHV----KNFDYVVVN-AEGKLDVAVKLVESIIDAEKAK 276 (284)
Q Consensus 225 ~-~~~~~i~~rl~~~~~e~~~~----~~~D~vivn-~~~~~e~~~~~i~~~i~~~~~~ 276 (284)
+ ....++.+++...+.++... ....++++| ++++++++.++|.+.+......
T Consensus 149 dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 149 ERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2 12256777777776655433 345688889 8899999999999999987654
No 57
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.45 E-value=2.1e-13 Score=113.60 Aligned_cols=91 Identities=12% Similarity=0.055 Sum_probs=57.6
Q ss_pred CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCH
Q 023332 180 GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKL 259 (284)
Q Consensus 180 g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~ 259 (284)
+..+|+++.......+.. ..+.+||+++| .+++.+|+.+|...+.+.+.+++..+....+....+|++|.|+ +++
T Consensus 105 ~~~vv~~~~~l~e~~~~~---~~d~vi~l~~~-~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~~~ad~vIdn~-~~~ 179 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTA---LCDRILVVDVS-PQTQLARSAQRDNNNFEQIQRIMNSQVSQQERLKWADDVINND-AEL 179 (206)
T ss_dssp SSEEEEECTTTTTTTCGG---GCSEEEEEECC-HHHHHHHHC-----CHHHHHHHHHHSCCHHHHHHHCSEEEECC-SCH
T ss_pred CCEEEEEechhhhcCcHh---hCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEECC-CCc
Confidence 557888864421111111 23578999997 6999999999976677888787775322222223578877665 699
Q ss_pred H----HHHHHHHHHHHHHHh
Q 023332 260 D----VAVKLVESIIDAEKA 275 (284)
Q Consensus 260 e----~~~~~i~~~i~~~~~ 275 (284)
+ ++.++|.+++.....
T Consensus 180 ~~~~~~~~~~i~~~~~~~~~ 199 (206)
T 1jjv_A 180 AQNLPHLQQKVLELHQFYLQ 199 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 9 999999999877554
No 58
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.45 E-value=1.6e-12 Score=106.73 Aligned_cols=168 Identities=18% Similarity=0.202 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC--CceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhh---hcccc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD--SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYAL---VYGDY 165 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 165 (284)
++|+|+|++||||||+++.|++.+. ++..+..+ .+.. ..+ ...+...+.++.+..... +....
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d---~~~~-----~~~----~~~i~~~~~~g~~~~~~~~~~~~~~~ 68 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR---EPGG-----TKV----GEVLREILLTEELDERTELLLFEASR 68 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE---SSCS-----SHH----HHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe---CCCC-----Cch----HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4799999999999999999998762 22222211 1110 000 011111111111110000 00011
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh--C-CCeEEEEEecCCHHHHHHHHHhhccCC
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL--G-DSAVFVFLMAESETALVERLVERKTES 227 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~--g-~~~~~I~l~~p~~~~l~~Rl~~R~~~~ 227 (284)
+....+.+...+..|..|++|... ..+..+...+ + .++.+||+++| .+++.+|+.+|+..+
T Consensus 69 ~~~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~r~~~~ 147 (195)
T 2pbr_A 69 SKLIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIP-VDIALRRLKEKNRFE 147 (195)
T ss_dssp HHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCC-HHHHHHHhhccCccc
Confidence 111122344567788889998321 1222222111 1 46789999997 699999998776544
Q ss_pred HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 228 REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 228 ~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+++.+++...+.+...... .++++|++++++++.++|.+++.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 148 NKEFLEKVRKGFLELAKEEE-NVVVIDASGEEEEVFKEILRALSG 191 (195)
T ss_dssp CHHHHHHHHHHHHHHHHHST-TEEEEETTSCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhhCC-CEEEEECCCCHHHHHHHHHHHHHH
Confidence 45566666554443321111 234556668999999999998864
No 59
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.45 E-value=3.2e-13 Score=109.65 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh-ccCCceeEeeeccccCCCCCCCC--ceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE-SRDSLRFVVTATSRPMRPGEENG--KDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~-~~~~~~~~~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
+.+|+|+|++||||||+++.|++ .++ +..+..+..|....+...+ ..+ +... .. ..+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~-~~~i~~d~~r~~~~~~~~~~~~~~---~~~~-~~---------------~~~ 61 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG-FYNINRDDYRQSIMAHEERDEYKY---TKKK-EG---------------IVT 61 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT-EEEECHHHHHHHHTTSCCGGGCCC---CHHH-HH---------------HHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC-cEEecHHHHHHHhhCCCccchhhh---chhh-hh---------------HHH
Confidence 47899999999999999999998 443 3333233333211111001 000 1000 00 001
Q ss_pred CCCHHHHHHHH---HcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc--cCCHHHHHHHH
Q 023332 167 GIPKKQIREYM---AKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK--TESREELLVRI 235 (284)
Q Consensus 167 g~~~~~i~~~l---~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~--~~~~~~i~~rl 235 (284)
....+.+...+ ..|..+|+|+.. ..+..+....|.++.+||+++| .+++.+|+..|. ..+++.+..++
T Consensus 62 ~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~~~~~~R~~~R~~~~~~~~~i~~~~ 140 (181)
T 1ly1_A 62 GMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMY 140 (181)
T ss_dssp HHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC-HHHHHHHHTTCGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHhccccCCCCHHHHHHHH
Confidence 11223455667 789999999765 2233344445667788999996 699999999987 34566666666
Q ss_pred HHHHHHhhccCCcc-EEEECCCCCHHHHHHHHHHHHHH
Q 023332 236 ATAREEIKHVKNFD-YVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 236 ~~~~~e~~~~~~~D-~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
....... .++ ++ +|++.+ ++++..|...+..
T Consensus 141 ~~~~~~~----~~~~~~-id~~~~-~~v~~~i~~~l~~ 172 (181)
T 1ly1_A 141 KSMREYL----GLPVYN-GTPGKP-KAVIFDVDGTLAK 172 (181)
T ss_dssp HHHHHHH----TCCCC----------------------
T ss_pred HHhhccC----CCCccc-cCCCCC-ceeeehhhhhhhc
Confidence 5544332 223 44 566532 6666666666554
No 60
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.43 E-value=3e-13 Score=114.17 Aligned_cols=175 Identities=21% Similarity=0.340 Sum_probs=94.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeecccc-CCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP-MRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.+++|+|+|++||||||+++.|++.++...+..++..+. ...+...| ..+...+..+.+.....+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g--------~~i~~~~~~g~~~~~~~~~~---- 71 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENG--------KRAKEFMEKGQLVPDEIVVN---- 71 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHH--------HHHHHHHHTTCCCCHHHHHH----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchh--------HHHHHHHHcCCcCCHHHHHH----
Confidence 467899999999999999999998876333322222222 00010000 00111111111110000000
Q ss_pred CCHHHHH-HHHHcCCcEEEEecHHH---HHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc------------------
Q 023332 168 IPKKQIR-EYMAKGYDIILRVDIQG---AQTLRRVLGDSAVFVFLMAESETALVERLVERKT------------------ 225 (284)
Q Consensus 168 ~~~~~i~-~~l~~g~~vvld~~~~~---~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~------------------ 225 (284)
...+.+. ... .+..+|+|+.... +..+......++.+||+++| .+++.+|+..|..
T Consensus 72 ~~~~~~~~~~~-~~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~-~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~ 149 (222)
T 1zak_A 72 MVKERLRQPDA-QENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVP-DELLVERVVGRRLDPVTGKIYHLKYSPPENE 149 (222)
T ss_dssp HHHHHHHSHHH-HHTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECC-HHHHHHHHTTEEECTTTCCEEESSSSCCCSS
T ss_pred HHHHHHhhccc-cCCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECC-HHHHHHHHHcCCcccccCCccccccCCCccc
Confidence 0000110 111 2345667974432 22333221134688999997 6999999976631
Q ss_pred -----------CCHHHHHHHHHHHHHHhhc-cCCc--cEEEECCCCCHHHHHHHHHHHHHHHHhhh
Q 023332 226 -----------ESREELLVRIATAREEIKH-VKNF--DYVVVNAEGKLDVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 226 -----------~~~~~i~~rl~~~~~e~~~-~~~~--D~vivn~~~~~e~~~~~i~~~i~~~~~~~ 277 (284)
+..+.+..|+.....+... ...+ .++++|+++++++++++|.+++.....++
T Consensus 150 ~~~~~l~~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~~~~~Id~~~~~~ev~~~I~~~l~~~l~~~ 215 (222)
T 1zak_A 150 EIASRLTQRFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKK 215 (222)
T ss_dssp GGGGGCBCCTTCCTTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcEEEEECCCCHHHHHHHHHHHHHhhcccc
Confidence 2356677777766553322 1122 25667788999999999999998765443
No 61
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.41 E-value=1.2e-12 Score=110.78 Aligned_cols=164 Identities=18% Similarity=0.236 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
++|+|+|++||||||+++.|++.++...+..++..|.+..+ +..+ ...+...+..+.+.+.. ...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~---~~~~----g~~i~~~~~~g~~~~~~--------~~~ 65 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG---GTEL----GKKAKEFIDRGDLVPDD--------ITI 65 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT---TCHH----HHHHHHHHTTTCCCCHH--------HHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc---CCHH----HHHHHHHHHcCCcCcHH--------HHH
Confidence 46999999999999999999987753333333333332111 0000 01112222222211111 012
Q ss_pred HHHHHHHHc--CCcEEEEecHHH---HHHHHH---HhC-CCeEEEEEecCCHHHHHHHHHhhcc----------------
Q 023332 171 KQIREYMAK--GYDIILRVDIQG---AQTLRR---VLG-DSAVFVFLMAESETALVERLVERKT---------------- 225 (284)
Q Consensus 171 ~~i~~~l~~--g~~vvld~~~~~---~~~l~~---~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~---------------- 225 (284)
..+...+.. |..+|+|+.... +..+.. ..| .++.+|++++| .+++.+|+..|..
T Consensus 66 ~~i~~~l~~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~g~~y~~~~~~p 144 (223)
T 2xb4_A 66 PMVLETLESKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLP-REVAKNRIMGRRICKNNPNHPNNIFIDAI 144 (223)
T ss_dssp HHHHHHHHHHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTBCEESSCTTSCCBTTCGGG
T ss_pred HHHHHHHhcccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcccCCccccCCccccccCCC
Confidence 345556666 899999974422 223322 223 35688999997 6999999988852
Q ss_pred -------------------CCHH-HHHHHHHHHHHH----hh----ccC-----CccEEEECCCCCHHHHHHHHHHHH
Q 023332 226 -------------------ESRE-ELLVRIATAREE----IK----HVK-----NFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 226 -------------------~~~~-~i~~rl~~~~~e----~~----~~~-----~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
++.+ .+.+|+..+... .. +.. ...++++|++++++++.++|.+++
T Consensus 145 ~~~~~~~~~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~~~~~v~~~i~~~l 222 (223)
T 2xb4_A 145 KPNGDVCRVCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEGSIDSIKDTLLAQL 222 (223)
T ss_dssp CCBTTBCTTTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTSCHHHHHHHHHHHH
T ss_pred ccccccccccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 1235 677777543322 11 111 234677888899999999998876
No 62
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.40 E-value=4.9e-12 Score=106.41 Aligned_cols=165 Identities=15% Similarity=0.194 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCC-CCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMR-PGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
++++|+|+|++||||||+++.|++.++...+..++..+... .+...|. .....+..+...+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~--------~i~~~~~~g~~~~~~-------- 67 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGL--------EAKSIIESGNFVGDE-------- 67 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCH--------HHHHHHHHTCCCCHH--------
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHH--------HHHHHHHCCCcCCHH--------
Confidence 36789999999999999999999987533333222222110 0000110 011111111110000
Q ss_pred CCHHHHHHHHH---cCCcEEEEecHH------HHHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhcc------------
Q 023332 168 IPKKQIREYMA---KGYDIILRVDIQ------GAQTLRRVLG-DSAVFVFLMAESETALVERLVERKT------------ 225 (284)
Q Consensus 168 ~~~~~i~~~l~---~g~~vvld~~~~------~~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~------------ 225 (284)
...+.+...+. .|..+|+|+.+. .+..+....| .++.+||+++| .+++.+|+..|..
T Consensus 68 ~~~~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~ 146 (217)
T 3be4_A 68 IVLGLVKEKFDLGVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEID-DSEIIERISGRCTHPASGRIYHVKY 146 (217)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred HHHHHHHHHHhccccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCCCccccCcccccc
Confidence 00112233333 378899996432 2222222233 45689999997 6999999987741
Q ss_pred ---------------------CCHHHHHHHHHHHHHHhh-----ccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 226 ---------------------ESREELLVRIATAREEIK-----HVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 226 ---------------------~~~~~i~~rl~~~~~e~~-----~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
+..+.+.+++........ +.....++.+|+++++++++++|.+++
T Consensus 147 ~pp~~~~~~~~~~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 217 (217)
T 3be4_A 147 NPPKQPGIDDVTGEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKLPPKEVTEQIKKIL 217 (217)
T ss_dssp BCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHC
T ss_pred CCCCccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHhhC
Confidence 245667777775544322 112234677888899999999998753
No 63
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.39 E-value=5.2e-12 Score=102.81 Aligned_cols=159 Identities=15% Similarity=0.084 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhccc--chhhhhhhcccc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKN--ELLEYALVYGDY 165 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 165 (284)
.+|++|+|+|++||||||+++.|++.++...+ . + + ..+ ...+...+..+ .|.......
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i-~-d----~-------~~~----g~~i~~~~~~g~~~~~~~~~~~--- 62 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLPGSFV-F-E----P-------EEM----GQALRKLTPGFSGDPQEHPMWI--- 62 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHSTTCEE-C-C----T-------HHH----HHHHHHTSTTCCSCGGGSTTHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE-E-c----h-------hhh----HHHHHHhCccccchhhhhHHHH---
Confidence 35789999999999999999999987752211 0 0 0 000 00111111000 000000000
Q ss_pred cCCCHHHHHHHHHc-CCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHH
Q 023332 166 KGIPKKQIREYMAK-GYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT--ESREELLVRIA 236 (284)
Q Consensus 166 yg~~~~~i~~~l~~-g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~ 236 (284)
....+.+...++. |..||+|+++ ..........|.....||+++| .+++.+|+..|.. ...+.+...+.
T Consensus 63 -~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~-~e~~~~R~~~R~~r~~~~~~~~~~~~ 140 (183)
T 2vli_A 63 -PLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAP-LNVVLERLRRDGQPQVNVGTVEDRLN 140 (183)
T ss_dssp -HHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECC-HHHHHHHHHTC----CCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCC-HHHHHHHHHhccccchhHHHHHHHHH
Confidence 0012234455665 7889999765 1222223334555667999997 6999999988853 22333322222
Q ss_pred HHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 237 TAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 237 ~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.+... ...+ +|.+++.++++++++|.+.+...
T Consensus 141 -~~~~~---~~~~-~Id~~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 141 -ELRGE---QFQT-HIDTAGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp -HHTSG---GGCS-EEECTTCCHHHHHHHHHHHHTCC
T ss_pred -hhccc---ccce-EeeCCCCCHHHHHHHHHHHHHHh
Confidence 11111 2234 54444479999999999988653
No 64
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.39 E-value=2.6e-12 Score=106.79 Aligned_cols=170 Identities=16% Similarity=0.218 Sum_probs=100.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchh---hhhhhcccccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELL---EYALVYGDYKG 167 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~yg 167 (284)
++|+|.|+.||||||+++.|++.+...+.. ...+|.|.... .+ +.+.......... +..-+..+. .
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~-v~~treP~~t~-~~--------~~ir~~l~~~~~~~~~~~ll~~a~r-~ 69 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKK-VILKREPGGTE-TG--------EKIRKILLEEEVTPKAELFLFLASR-N 69 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEESSCSSH-HH--------HHHHHHHHHSCCCHHHHHHHHHHHH-H
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCc-EEEEECCCCCc-HH--------HHHHHHhhcccCChHHHHHHHHHHH-H
Confidence 479999999999999999998876422221 12234442111 01 1111111111100 000011111 1
Q ss_pred CCHHHHHHHHHcCCcEEEEecH---------------HHHHHHHHHh---CCCeEEEEEecCCHHHHHHHHHhhccCCHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDI---------------QGAQTLRRVL---GDSAVFVFLMAESETALVERLVERKTESRE 229 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~---------------~~~~~l~~~~---g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~ 229 (284)
.....+...++.|..||+|-.. ..+..+.... -.++.+++++.| .++..+|...|.+....
T Consensus 70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~-~e~~~~R~~~~dr~e~~ 148 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVD-VETALKRKGELNRFEKR 148 (197)
T ss_dssp HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHC---CTTCCH
T ss_pred HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcC-hHHHHHhCcCcCccccH
Confidence 1234577788999999999433 1222232221 147889999997 68888998777665555
Q ss_pred HHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 230 ELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 230 ~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
++.+++...+.++.......++++|++++++++.++|.+.+++
T Consensus 149 ef~~rv~~~y~~la~~~~~~~~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 149 EFLERVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHHCTTTEEEEETTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6778887776665444344588899999999999999998865
No 65
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.39 E-value=4e-12 Score=103.84 Aligned_cols=157 Identities=12% Similarity=0.037 Sum_probs=80.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc-cccCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG-DYKGI 168 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~yg~ 168 (284)
++.|+|+|++||||||+++.|++.++...+..+. +..........+.....+ ..|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~----------------------~~~~~~g~~~~~~~~~~g~~~~~~ 62 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDK----------------------EIEKRTGADIAWIFEMEGEAGFRR 62 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHH----------------------HHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChH----------------------HHHHHcCCChhhHHHHhCHHHHHH
Confidence 5789999999999999999999887522221111 111100000000000000 01111
Q ss_pred CH-HHHHHHHHcCCcEEEEec---H--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHH--Hhh---ccCCHHHHHHHHHH
Q 023332 169 PK-KQIREYMAKGYDIILRVD---I--QGAQTLRRVLGDSAVFVFLMAESETALVERL--VER---KTESREELLVRIAT 237 (284)
Q Consensus 169 ~~-~~i~~~l~~g~~vvld~~---~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl--~~R---~~~~~~~i~~rl~~ 237 (284)
.. +.+..+... ..+|+... . .......... ..+||+++| .+++.+|+ ..+ .........+++..
T Consensus 63 ~~~~~~~~~~~~-~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~-~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~ 137 (185)
T 3trf_A 63 REREMIEALCKL-DNIILATGGGVVLDEKNRQQISET---GVVIYLTAS-IDTQLKRIGQKGEMRRPLFIKNNSKEKLQQ 137 (185)
T ss_dssp HHHHHHHHHHHS-SSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECC-HHHHHHHHHCCTTCSSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCcEEecCCceecCHHHHHHHHhC---CcEEEEECC-HHHHHHHHhhcCCCCCCCCCCCCHHHHHHH
Confidence 11 122333333 33444431 1 1112222222 488999997 69999999 443 22222222333333
Q ss_pred HHHHh--hccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 238 AREEI--KHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 238 ~~~e~--~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
...+- .+...+|++|.+++.++++++++|.+.+...
T Consensus 138 ~~~~r~~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~~ 175 (185)
T 3trf_A 138 LNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQT 175 (185)
T ss_dssp HHHHHHHHHHHHCSEEEECTTCCHHHHHHHHHHHSCC-
T ss_pred HHHHHHHHHhhcCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 22221 1123478888777558999999999887654
No 66
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.38 E-value=8.4e-13 Score=108.22 Aligned_cols=95 Identities=15% Similarity=0.233 Sum_probs=57.9
Q ss_pred HHHHH--HcCCcEEEEecH----H-H------HHHHHHHhCCCeEEEEEecCCHHHHH-HHHHh--hcc-C--CHHHH--
Q 023332 173 IREYM--AKGYDIILRVDI----Q-G------AQTLRRVLGDSAVFVFLMAESETALV-ERLVE--RKT-E--SREEL-- 231 (284)
Q Consensus 173 i~~~l--~~g~~vvld~~~----~-~------~~~l~~~~g~~~~~I~l~~p~~~~l~-~Rl~~--R~~-~--~~~~i-- 231 (284)
+...+ ..|..||+|+.. + + ...+.. . .+..+||+++|. +++. +|+.. |++ . ..+.+
T Consensus 76 i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~vi~l~~~~-~~~~~rr~~~~~R~~~~~~~~~~~~~ 152 (194)
T 1nks_A 76 IAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE-I-NPSVIFLLEADP-KIILSRQKRDTTRNRNDYSDESVILE 152 (194)
T ss_dssp HHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHH-H-CCSEEEEEECCH-HHHHHHHHHCTTTCCCCCCSHHHHHH
T ss_pred HHHHhhccCCCEEEECCchhhccccccccCCCHHHHHh-c-CCCEEEEEeCCH-HHHHHHHHhhcccCCCCccCHHHHHH
Confidence 44555 678899999742 1 1 222332 3 356889999984 6665 55877 754 2 33333
Q ss_pred HHHHHHHHHHhhccC-CccEEEE-CCCCCHHHHHHHHHHHH
Q 023332 232 LVRIATAREEIKHVK-NFDYVVV-NAEGKLDVAVKLVESII 270 (284)
Q Consensus 232 ~~rl~~~~~e~~~~~-~~D~viv-n~~~~~e~~~~~i~~~i 270 (284)
.+++...+.+..... ..+++++ |+++++++++++|.+++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~I~d~~~~~e~v~~~I~~~l 193 (194)
T 1nks_A 153 TINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSM 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEECCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 244444443332111 3466777 88889999999998875
No 67
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.38 E-value=3.5e-12 Score=104.53 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=85.7
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhc-cCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchh---hhh
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELL---EYA 159 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 159 (284)
+|.+.++++|+|+|++||||||+++.|++. ++...+..+...+........+.. +.. .++ ...
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~--------~~~-----~~~~r~~~~ 70 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTE--------LDT-----HIIEEKDED 70 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC--------------C-----CCCCHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHH--------hhh-----cccCCCCHH
Confidence 456777899999999999999999999987 543333333333322111110100 000 000 000
Q ss_pred hhcccccCCCHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHH-
Q 023332 160 LVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATA- 238 (284)
Q Consensus 160 ~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~- 238 (284)
. ..+.+...+..+..+|+|.....+ +... ....+||+++| .+++.+|+.+|+. +...+..++..+
T Consensus 71 ~--------~~~~l~~~~~~~g~~vi~~~~~~~--~~~~--~~~~vi~l~~~-~e~~~~Rl~~R~~-~~~~~~~~~~~q~ 136 (184)
T 1y63_A 71 R--------LLDFMEPIMVSRGNHVVDYHSSEL--FPER--WFHMVVVLHTS-TEVLFERLTKRQY-SEAKRAENMEAEI 136 (184)
T ss_dssp H--------HHHHHHHHHTSSSEEEEECSCCTT--SCGG--GCSEEEEEECC-HHHHHHHHHHTTC-CHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHhccCCEEEeCchHhh--hhhc--cCCEEEEEECC-HHHHHHHHHhCCC-ChhhhHhhHHHHH
Confidence 0 011233444234456777543211 1111 13478999997 6999999999853 333333333222
Q ss_pred ----HHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 239 ----REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 239 ----~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
..+.......|++|..++++++++.+++.+++...+.
T Consensus 137 ~~~l~~~~~~~y~~~~vi~~n~~~~~~~~~~v~~i~~~l~~ 177 (184)
T 1y63_A 137 QCICEEEARDAYEDDIVLVRENDTLEQMAATVEEIRERVEV 177 (184)
T ss_dssp TTHHHHHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1111111124766652347899997777766665543
No 68
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.37 E-value=1.6e-12 Score=110.06 Aligned_cols=175 Identities=14% Similarity=0.159 Sum_probs=93.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
.++++|+|+|++||||||+++.|++.++...+..++..+.... .+..+ .......+..+.......
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~---~~~~~----g~~i~~~~~~g~~~~~~~------- 70 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNML---RGTEI----GVLAKAFIDQGKLIPDDV------- 70 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHH---HTCHH----HHHHHHHHTTTCCCCHHH-------
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhh---cCChH----HHHHHHHHHcCCcCCHHH-------
Confidence 4478999999999999999999998775333332222221100 00000 000001111111100000
Q ss_pred CCHHHHHHHHH--cCCcEEEEecHHHHHH---HHHHhCCCeEEEEEecCCHHHHHHHHHhhc------------------
Q 023332 168 IPKKQIREYMA--KGYDIILRVDIQGAQT---LRRVLGDSAVFVFLMAESETALVERLVERK------------------ 224 (284)
Q Consensus 168 ~~~~~i~~~l~--~g~~vvld~~~~~~~~---l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------------------ 224 (284)
....+.+.+. .+..+|+|+......+ +... ...+.+||+++| .+++.+|+..|.
T Consensus 71 -~~~~~~~~l~~~~~~~~vid~~~~~~~~~~~l~~~-~~~~~vi~L~~~-~~~~~~R~~~R~~~~~~~~~y~~~~~pp~~ 147 (227)
T 1zd8_A 71 -MTRLALHELKNLTQYSWLLDGFPRTLPQAEALDRA-YQIDTVINLNVP-FEVIKQRLTARWIHPASGRVYNIEFNPPKT 147 (227)
T ss_dssp -HHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTT-SCCCEEEEEECC-HHHHHHHHTCEEEETTTTEEEETTTBCCSS
T ss_pred -HHHHHHHHHhcccCCCEEEeCCCCCHHHHHHHHHh-cCCCEEEEEECC-HHHHHHHHHcCcCCCccCCccccccCCCCc
Confidence 0011222233 3678899985432222 2221 245689999997 699999997662
Q ss_pred ---------------cCCHHHHHHHHHHHHHHhhc-cCCc----cEEEECCCCCHHHHHHHHHHHHHHHHhhhhhh
Q 023332 225 ---------------TESREELLVRIATAREEIKH-VKNF----DYVVVNAEGKLDVAVKLVESIIDAEKAKVQQR 280 (284)
Q Consensus 225 ---------------~~~~~~i~~rl~~~~~e~~~-~~~~----D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~ 280 (284)
.+..+.+.+|+..+...... ...+ .++++|++ ++++++++|.+++.........+
T Consensus 148 ~~~~~~~~~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~-~~~~v~~~i~~~l~~~~~~~~~~ 222 (227)
T 1zd8_A 148 VGIDDLTGEPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT-ETNKIWPYVYAFLQTKVPQRSQK 222 (227)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS-SHHHHHHHHHHHHTTTSCC----
T ss_pred ccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC-CHHHHHHHHHHHHHhhcCCCCCC
Confidence 23456777777654443221 0122 26778886 89999999999997654444433
No 69
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.36 E-value=5.6e-12 Score=106.12 Aligned_cols=167 Identities=17% Similarity=0.188 Sum_probs=92.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.|++|+|+|++||||||+++.|++.++...+..++..+....+ +..+ ...+...+..+...+...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~---~~~~----g~~i~~~~~~g~~~~~~~-------- 67 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAK---GTQL----GLEAKKIMDQGGLVSDDI-------- 67 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT---TCHH----HHHHHHHHHTTCCCCHHH--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHc---CChH----HHHHHHHHHCCCcCCHHH--------
Confidence 4789999999999999999999988753333222222211000 0000 000111111111111000
Q ss_pred CHHHHHHHHH----cCCcEEEEecH---H---HHHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhc-------------
Q 023332 169 PKKQIREYMA----KGYDIILRVDI---Q---GAQTLRRVLG-DSAVFVFLMAESETALVERLVERK------------- 224 (284)
Q Consensus 169 ~~~~i~~~l~----~g~~vvld~~~---~---~~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~------------- 224 (284)
....+...+. .|..+|+|+.. . .+..+....| ..+.+|++++| .+++.+|+..|.
T Consensus 68 ~~~~l~~~l~~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~R~~~r~~~~~~g~~y~~~~ 146 (220)
T 1aky_A 68 MVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVD-DELLVARITGRLIHPASGRSYHKIF 146 (220)
T ss_dssp HHHHHHHHHHHCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTT
T ss_pred HHHHHHHHHHhccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhCCCccCccCCcccccc
Confidence 0112223333 46789999733 2 1222222233 34478999997 699999998763
Q ss_pred --------------------cCCHHHHHHHHHHHHHHhh----ccC-CccEEEECCCCCHHHHHHHHHHHHH
Q 023332 225 --------------------TESREELLVRIATAREEIK----HVK-NFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 225 --------------------~~~~~~i~~rl~~~~~e~~----~~~-~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
.++.+.+.+|+........ +.. ...++.+|+++++++++++|.+.+.
T Consensus 147 ~pp~~~~~d~~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 218 (220)
T 1aky_A 147 NPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLG 218 (220)
T ss_dssp BCCSSTTBCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTSCHHHHHHHHHHHHT
T ss_pred CCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 1235667778765443321 111 1236777888899999999998874
No 70
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.36 E-value=6.3e-12 Score=108.82 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC--CceeE--eeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD--SLRFV--VTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
++++|+|+|++||||||+++.|++.+. ++..+ ..+..+....+ +... .+. ++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~------~~~~-~e~---------~~~------- 59 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV------WKEK-YEE---------FIK------- 59 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS------CCGG-GHH---------HHH-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh------hhHH-HHH---------HHH-------
Confidence 478999999999999999999988632 12221 11211111110 0000 000 000
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC-CHHHHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE-SREELLVRIAT 237 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~-~~~~i~~rl~~ 237 (284)
......+...+.. ..||+|+.+ ..+..+....+.+..+||+++| .+++.+|+.+|+.. +.+.+ .++..
T Consensus 60 --~~~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l-~~~~~ 134 (260)
T 3a4m_A 60 --KSTYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVI-KKMYE 134 (260)
T ss_dssp --HHHHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHH-HHHHH
T ss_pred --HHHHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHH-HHHHH
Confidence 0011234556666 789999654 2233344445667889999997 69999999998743 33333 33322
Q ss_pred HHHHhhc---cCCccEEEECCCC--CHHHHHHHHHHHHHH
Q 023332 238 AREEIKH---VKNFDYVVVNAEG--KLDVAVKLVESIIDA 272 (284)
Q Consensus 238 ~~~e~~~---~~~~D~vivn~~~--~~e~~~~~i~~~i~~ 272 (284)
.+.+... +...+++| |+++ ++++++++|.+.+..
T Consensus 135 ~~e~~~~~~~~~~~~~~I-d~~~~~~~~ei~~~I~~~l~~ 173 (260)
T 3a4m_A 135 KFDEPGKKYKWDEPFLII-DTTKDIDFNEIAKKLIEKSKE 173 (260)
T ss_dssp HCCCTTSSCGGGCCSEEE-ETTSCCCHHHHHHHHHHHHTS
T ss_pred HhcCccccCCCCCCEEEE-eCCCCCCHHHHHHHHHhcccC
Confidence 1111110 12346665 4444 789999998887764
No 71
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.33 E-value=4.1e-13 Score=114.18 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=39.7
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhhc----cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEIKH----VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~~~----~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.++.+||+++| .+++.+|+.+|++..+ .++.+++...+.+... ....+++++|++++++++.++|.++++.
T Consensus 146 ~pD~vi~Ld~~-~e~~~~Ri~~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 146 QADLIIYLRTS-PEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESS 224 (230)
T ss_dssp CCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC---------------
T ss_pred CCCEEEEEeCC-HHHHHHHHHHcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 46789999997 6999999988864322 2567788777765532 2345677788889999999999999876
Q ss_pred HH
Q 023332 273 EK 274 (284)
Q Consensus 273 ~~ 274 (284)
..
T Consensus 225 ~~ 226 (230)
T 2vp4_A 225 IF 226 (230)
T ss_dssp --
T ss_pred Hh
Confidence 44
No 72
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.33 E-value=1.7e-11 Score=105.54 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=60.5
Q ss_pred CCcEEEEecHHH-HHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHHHHHHHH----Hh--hccCCc
Q 023332 180 GYDIILRVDIQG-AQTLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVRIATARE----EI--KHVKNF 248 (284)
Q Consensus 180 g~~vvld~~~~~-~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~rl~~~~~----e~--~~~~~~ 248 (284)
...+|+|+.+.. ...+...+ +.+||+++| .+++.+|+..|. ..+.+.+.+++..... +. .....+
T Consensus 131 ~~~vIveG~~~~~~~~~~~~~---d~vi~l~~~-~e~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~a 206 (252)
T 1uj2_A 131 ADVVLFEGILAFYSQEVRDLF---QMKLFVDTD-ADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYA 206 (252)
T ss_dssp CSEEEEECTTTTSSHHHHHHC---SEEEEEECC-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGC
T ss_pred CcEEEEeeeccccCHHHHHhc---CeeEEEeCC-HHHHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcC
Confidence 357889986532 23344433 578999997 699999998885 4567777666664321 11 223457
Q ss_pred cEEE---ECCCCCHHHHHHHHHHHHHHHH
Q 023332 249 DYVV---VNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 249 D~vi---vn~~~~~e~~~~~i~~~i~~~~ 274 (284)
|++| +|++++++++.++|.+++....
T Consensus 207 d~vI~~~id~~~s~e~v~~~I~~~l~~~~ 235 (252)
T 1uj2_A 207 DVIIPRGADNLVAINLIVQHIQDILNGGP 235 (252)
T ss_dssp SEEEETGGGCHHHHHHHHHHHHHHHHC--
T ss_pred cEEEecCCCChhHHHHHHHHHHHHHccch
Confidence 8887 2556789999999999987643
No 73
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.32 E-value=3.1e-12 Score=107.52 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=59.0
Q ss_pred CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCH
Q 023332 180 GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKL 259 (284)
Q Consensus 180 g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~ 259 (284)
+..+|+++.+.....+.. ..+.+||+++| .+++.+|+.+|...+.+.+.+++.......++...+|++|.|+ +++
T Consensus 107 ~~~vi~~~~~l~~~~~~~---~~d~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~~~~ad~vId~~-~~~ 181 (218)
T 1vht_A 107 SPYVLWVVPLLVENSLYK---KANRVLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQATREARLAVADDVIDNN-GAP 181 (218)
T ss_dssp SSEEEEECTTTTTTTGGG---GCSEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHHHHHCSEEEECS-SCT
T ss_pred CCEEEEEeeeeeccCccc---cCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHHHhCCEEEECC-CCH
Confidence 445666664311111111 34588999997 6999999999976677777777665322222233468776655 689
Q ss_pred HHHHHHHHHHHHHHH
Q 023332 260 DVAVKLVESIIDAEK 274 (284)
Q Consensus 260 e~~~~~i~~~i~~~~ 274 (284)
+++.++|.++++...
T Consensus 182 ~~~~~~I~~~l~~~~ 196 (218)
T 1vht_A 182 DAIASDVARLHAHYL 196 (218)
T ss_dssp TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887753
No 74
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.32 E-value=8.4e-12 Score=100.26 Aligned_cols=66 Identities=20% Similarity=0.172 Sum_probs=45.7
Q ss_pred CeEEEEEecCCHHHHHHHHHhhccC-----CHHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 202 SAVFVFLMAESETALVERLVERKTE-----SREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 202 ~~~~I~l~~p~~~~l~~Rl~~R~~~-----~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+.+||+++| .+++.+|+.+|... ..+.+.+++...... +.. +|++| |++++++++.++|.+++.+
T Consensus 93 ~~~~i~l~~~-~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~--~~~-~~~~i-~~~~~~~~~~~~i~~~l~~ 163 (168)
T 2pt5_A 93 RGTTVFIDIP-FEVFLERCKDSKERPLLKRPLDEIKNLFEERRKI--YSK-ADIKV-KGEKPPEEVVKEILLSLEG 163 (168)
T ss_dssp TSEEEEEECC-HHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHH--HTT-SSEEE-ECSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECC-HHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHH--HHh-CCEEE-CCCCCHHHHHHHHHHHHHh
Confidence 3688999997 69999999875311 123344444432221 233 89998 8878999999999998864
No 75
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.31 E-value=3.6e-12 Score=104.47 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=83.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC----ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS----LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
..+|.+|+|+|++||||||+++.|++.+.. ..+...+..+....++ ..+ ...+....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~-----~~~-~~~~r~~~------------- 70 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEG-----AGF-TREERLRH------------- 70 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTT-----CCC-CHHHHHHH-------------
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhc-----cCC-ChhhHHHH-------------
Confidence 356899999999999999999999887641 1111111111111100 000 00000000
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCH--HHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESR--EELLVR 234 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~--~~i~~r 234 (284)
+......++..+..|..|++|+.. ..+..+....|.++.+||+++| .+++.+|+..+..... +.+ ..
T Consensus 71 ---~~~~~~~~~~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~-~e~~~~R~~~~~~~~~~~~~~-~~ 145 (186)
T 2yvu_A 71 ---LKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKAS-LEEVIRRDPKGLYKKALKGEL-EN 145 (186)
T ss_dssp ---HHHHHHHHHHHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCHHHHHHHHHTTCC-SS
T ss_pred ---HHHHHHHHHHHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHhhhhhhhhHHhhcch-hh
Confidence 000001122335678788888643 2223333344457889999997 6999999743210000 000 00
Q ss_pred HHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 235 IATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 235 l~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+...+..++.....+++|.+++.++++++++|.+.++.
T Consensus 146 ~~~~~~~y~~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 146 FTGITDPYEPPENPQLVLDTESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CHHHHSCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hhhhhhcccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 01111111111235666654447999999999998864
No 76
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.31 E-value=3.1e-12 Score=108.31 Aligned_cols=167 Identities=13% Similarity=0.149 Sum_probs=83.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
.+-++|+|++||||||+++.|++.++..++...+..|.... .+..+ -......+..+....... .
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~---~~t~l----G~~i~~~~~~G~lvpdei--------~ 72 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVK---AGTPL----GVEAKTYMDEGKLVPDSL--------I 72 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHH---TTCHH----HHHHHHHHTTTCCCCHHH--------H
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhcc---CCChH----HHHHHHHHhhccccccHH--------H
Confidence 46689999999999999999999876433333333332100 00000 001111112222111110 1
Q ss_pred HHHHHHHHHc---CCcEEEEecHHHHH---HHHHHhCCCeEEEEEecCCHHHHHHHHHhhc-------------------
Q 023332 170 KKQIREYMAK---GYDIILRVDIQGAQ---TLRRVLGDSAVFVFLMAESETALVERLVERK------------------- 224 (284)
Q Consensus 170 ~~~i~~~l~~---g~~vvld~~~~~~~---~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------------------- 224 (284)
.+.+++.+.. +..+|+|+.+.... .+.......+.+|++++| .+++.+|+..|.
T Consensus 73 ~~ll~~~l~~~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp-~e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~ 151 (230)
T 3gmt_A 73 IGLVKERLKEADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVP-FSEIIERMSGRRTHPASGRTYHVKFNPPKVE 151 (230)
T ss_dssp HHHHHHHHHSGGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCC-HHHHHHHHHTEEEETTTTEEEETTTBCCSST
T ss_pred HHHHHHHHhCcccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCC-HHHHHHHHHcCCcccccCCcccccCCCCCcc
Confidence 1223333332 45789998663332 333322245688999998 599999998763
Q ss_pred --------------cCCHHHHHHHHHHHHHHhh----ccCC------------ccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 225 --------------TESREELLVRIATAREEIK----HVKN------------FDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 225 --------------~~~~~~i~~rl~~~~~e~~----~~~~------------~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+++++.+.+|++.+..+.. +... --++.||++++++++.++|.+++.+
T Consensus 152 ~~~d~~g~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 152 GKDDVTGEPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLGAVEEIRARVRRAQVS 229 (230)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-----------------
T ss_pred CcCCCccCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 3467889999987766422 1111 2367889999999999999988764
No 77
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.31 E-value=5.3e-14 Score=117.65 Aligned_cols=167 Identities=20% Similarity=0.178 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCC-CceeEecCHHHHHHhhcc-------cchhhhhhhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEEN-GKDYYFVSKEEFLTMIDK-------NELLEYALVY 162 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 162 (284)
++|+|+|++||||||+++.|++.++..+..+..+. .+..+... +.. +...... ..+.+...+.
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~-~~~~~~~~~~~~--------~r~~~~~~~~~~~~~~~~~~~~~~ 71 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA-FPRYGQSVAADI--------AAEALHGEHGDLASSVYAMATLFA 71 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE-SSEEEEEEEEEE--------HHHHEEEEEEEEEEEHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe-ecCCCCcchhhH--------HHHHHcccccccCCCHhHHHHHHH
Confidence 47999999999999999999987753333222211 11100000 111 0000000 0011111111
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecHHH-----------------HHHHHHH----hC--CCeEEEEEecCCHHHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDIQG-----------------AQTLRRV----LG--DSAVFVFLMAESETALVER 219 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~~~-----------------~~~l~~~----~g--~~~~~I~l~~p~~~~l~~R 219 (284)
...+.. .+.+...+..|..||+|..+.. ...+... .+ .++.+|++++| .+++.+|
T Consensus 72 ~~r~~~-~~~i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~-~~~~~~R 149 (214)
T 1gtv_A 72 LDRAGA-VHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVS-AELAGER 149 (214)
T ss_dssp HHHHEE-HHHHHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEE-HHHHHHH
T ss_pred HHHhhh-HHHHHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCC-HHHHHHH
Confidence 111222 3445555667889999976521 1112221 12 45678999997 6999999
Q ss_pred HHhhccC-------C---HHHHHHHHHHHHHHhhccC-CccEEEECCCCCHHHHHHHHHH
Q 023332 220 LVERKTE-------S---REELLVRIATAREEIKHVK-NFDYVVVNAEGKLDVAVKLVES 268 (284)
Q Consensus 220 l~~R~~~-------~---~~~i~~rl~~~~~e~~~~~-~~D~vivn~~~~~e~~~~~i~~ 268 (284)
+.+|... . ..++.+++..++.++.... ..+++++|++++++++.++|.+
T Consensus 150 ~~~R~~~~~~~~~d~~e~~~~~~~~~~~~~~~~~~~~~~~~~~vId~~~~~~~v~~~i~~ 209 (214)
T 1gtv_A 150 SRGRAQRDPGRARDNYERDAELQQRTGAVYAELAAQGWGGRWLVVGADVDPGRLAATLAP 209 (214)
T ss_dssp HHHHHHEBBEEEEEEEEEEHHHHHHHHHHHHHHHHEEEEEEEEEEEEEEBHHHHHHHHC-
T ss_pred HHcccccccccccccccccHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHhcC
Confidence 9888531 1 1466677776665543322 2466777887899999888754
No 78
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.30 E-value=3.8e-12 Score=103.68 Aligned_cols=159 Identities=15% Similarity=0.083 Sum_probs=80.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC--CceeE--eeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD--SLRFV--VTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~~~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+|++|+|+|++||||||+++.|++.+. +...+ ..+..+.... .. ..+ ........ +.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~---~~--~~~-~~~~~~~~------~~------ 64 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KN--LGF-SPEDREEN------VR------ 64 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT---TT--CCS-SHHHHHHH------HH------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh---hc--ccc-ccccHHHH------HH------
Confidence 4589999999999999999999988752 11121 1111111000 00 000 00000000 00
Q ss_pred cccCCCHHHHHHHH-HcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHH
Q 023332 164 DYKGIPKKQIREYM-AKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIA 236 (284)
Q Consensus 164 ~~yg~~~~~i~~~l-~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~ 236 (284)
.. ......+ +.|..++.+... .....+....|.++.+||+++| .+++.+|+.+|.. .+....++.
T Consensus 65 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~~~~--~~~~~~~~~ 136 (179)
T 2pez_A 65 ----RI-AEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLY--KKARAGEIK 136 (179)
T ss_dssp ----HH-HHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECC-HHHHHHHCTTSHH--HHHHTTSSC
T ss_pred ----HH-HHHHHHHHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCC-HHHHHHHHhhhhH--HHHhccccc
Confidence 00 0111223 455444434321 1222333334566788999997 6999999865410 000000010
Q ss_pred HHH---HHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 237 TAR---EEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 237 ~~~---~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+. ...+....+|++|+|++.+++++.++|.++++.
T Consensus 137 ~~~~~~~~~~~~~~ad~vid~~~~~~~~~~~~i~~~l~~ 175 (179)
T 2pez_A 137 GFTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQE 175 (179)
T ss_dssp SCBTTTBCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccccCCccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 000 001112457888888767999999999999865
No 79
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.30 E-value=3.9e-11 Score=99.11 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=48.0
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHh-hcc--CCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEI-KHV--KNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~-~~~--~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..+.+||+++| .+++.+|+.+|++..+ ..+.+++...+.+. +.. ...+++| |+++++++++++|.+.+...
T Consensus 124 ~~d~vi~L~~~-~e~~~~Rl~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~I-d~~~~~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 124 SFDIVIYLRVS-TKTAISRIKKRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVV-DAELDVKTQIELIMNKLNSI 201 (205)
T ss_dssp CCSEEEEEECC-HHHHHHHHHHHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEE-ETTSCHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEeCC-HHHHHHHHHHcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEE-ECCCCHHHHHHHHHHHHHHh
Confidence 45688999997 6999999988864222 13445666555432 222 3345554 55579999999999998764
Q ss_pred H
Q 023332 274 K 274 (284)
Q Consensus 274 ~ 274 (284)
.
T Consensus 202 ~ 202 (205)
T 2jaq_A 202 K 202 (205)
T ss_dssp -
T ss_pred c
Confidence 3
No 80
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.30 E-value=2.1e-11 Score=99.73 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
|++|+|+|++||||||+++.|++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999998764
No 81
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.30 E-value=2.3e-12 Score=107.00 Aligned_cols=87 Identities=20% Similarity=0.236 Sum_probs=58.8
Q ss_pred CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCHH
Q 023332 181 YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLD 260 (284)
Q Consensus 181 ~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e 260 (284)
..+|+|+.......+.. ..+.+||+++| .+++.+|+.+| ..+.+.+.+++..+....++...+|++| +++++++
T Consensus 106 ~~vive~~~l~~~~~~~---~~~~~i~l~~~-~e~~~~Rl~~R-~~~~~~~~~~~~~~~~~~~~~~~ad~vI-d~~~~~~ 179 (204)
T 2if2_A 106 TLFILEASLLVEKGTYK---NYDKLIVVYAP-YEVCKERAIKR-GMSEEDFERRWKKQMPIEEKVKYADYVI-DNSGSIE 179 (204)
T ss_dssp CCEEEECSCSTTTTCGG---GSSEEEEECCC-HHHHHHHHHHT-CCCHHHHHHHHTTSCCHHHHGGGCSEEC-CCSSCHH
T ss_pred CEEEEEccccccCCchh---hCCEEEEEECC-HHHHHHHHHHc-CCCHHHHHHHHHhCCChhHHHhcCCEEE-ECCCCHH
Confidence 67888876421111111 23578999997 69999999998 4566667777765443333344568765 4558999
Q ss_pred HHHHHHHHHHHHH
Q 023332 261 VAVKLVESIIDAE 273 (284)
Q Consensus 261 ~~~~~i~~~i~~~ 273 (284)
++.++|.++++..
T Consensus 180 ~~~~~i~~~l~~~ 192 (204)
T 2if2_A 180 ETYKQVKKVYEEL 192 (204)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 82
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.30 E-value=2.2e-11 Score=104.73 Aligned_cols=190 Identities=11% Similarity=0.004 Sum_probs=88.9
Q ss_pred chhhhh-HHHH-hhhHHhhcccccCCCCCCCCC---CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC
Q 023332 59 TAAVKK-AELL-RSLEASLGHAFDSNPVCPPPN---PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE 133 (284)
Q Consensus 59 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~---g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~ 133 (284)
++..+. ...| +....+.++++. +.+ |++|+|+|++||||||+++.|++.++...+..+...+...
T Consensus 18 l~~~~~~~~~~~~~~~~l~~~~~~------i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~---- 87 (250)
T 3nwj_A 18 LETGSLLHSPFDEEQQILKKKAEE------VKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM---- 87 (250)
T ss_dssp --------------CHHHHHHHHT------THHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS----
T ss_pred eEEcceeeEEecCcchhhhhhhhh------hhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh----
Confidence 344444 4444 333444455554 445 8899999999999999999999977522222111111100
Q ss_pred CCceeEecCHHHHHHhhcccchhhhhhhcccccCCCHHHHHHHHHc-CCcEEEEecH-HHHHHHHHHhCCCeEEEEEecC
Q 023332 134 NGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAK-GYDIILRVDI-QGAQTLRRVLGDSAVFVFLMAE 211 (284)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~i~~~l~~-g~~vvld~~~-~~~~~l~~~~g~~~~~I~l~~p 211 (284)
.+. +...+........|.. ...+.+.++... ...||.++.- .........+ ....+||+++|
T Consensus 88 ~g~-----~i~~i~~~~ge~~fr~----------~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l-~~~~vV~L~a~ 151 (250)
T 3nwj_A 88 KGT-----SVAEIFEHFGESVFRE----------KETEALKKLSLMYHQVVVSTGGGAVIRPINWKYM-HKGISIWLDVP 151 (250)
T ss_dssp TTS-----CHHHHHHHHCHHHHHH----------HHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHH-TTSEEEEEECC
T ss_pred cCc-----cHHHHHHHhCcHHHHH----------HHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHH-hCCcEEEEECC
Confidence 011 1111111000000000 011123344444 4445544421 0001111222 23688999997
Q ss_pred CHHHHHHHHHhhcc-----CCH-------HHHHHHHHHHHHH-hhccCCccEEE------------ECCCCCHHHHHHHH
Q 023332 212 SETALVERLVERKT-----ESR-------EELLVRIATAREE-IKHVKNFDYVV------------VNAEGKLDVAVKLV 266 (284)
Q Consensus 212 ~~~~l~~Rl~~R~~-----~~~-------~~i~~rl~~~~~e-~~~~~~~D~vi------------vn~~~~~e~~~~~i 266 (284)
.+++.+|+.++.. ... +...+++.....+ ......+|.+| .+++.++++++++|
T Consensus 152 -~e~l~~Rl~~~~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I 230 (250)
T 3nwj_A 152 -LEALAHRIAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEA 230 (250)
T ss_dssp -HHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHH
T ss_pred -HHHHHHHHhhcCCCCCCcccCCCcccchhhHHHHHHHHHHHHHHHHhhCCEEEEecccccccccccCCCCCHHHHHHHH
Confidence 6999999975321 110 1112333332221 11123488887 33446899999999
Q ss_pred HHHHHHHHh
Q 023332 267 ESIIDAEKA 275 (284)
Q Consensus 267 ~~~i~~~~~ 275 (284)
.+.++....
T Consensus 231 ~~~i~~~~~ 239 (250)
T 3nwj_A 231 FEQVQSYLE 239 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999988653
No 83
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.29 E-value=1.3e-11 Score=100.57 Aligned_cols=156 Identities=18% Similarity=0.080 Sum_probs=80.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 166 (284)
+..+.+|+|+|++||||||+++.|++.++...+..+...+...... .+. ..+....+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~----~~~-------------------~~~~~~~~ 64 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD----GYD-------------------EEYDCPIL 64 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE----EEE-------------------TTTTEEEE
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh----hhh-------------------hhhcCccC
Confidence 3457789999999999999999999877532222221111100000 000 00000000
Q ss_pred CC--CHHHHHHHHHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHH-----HHHHHHH
Q 023332 167 GI--PKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELL-----VRIATAR 239 (284)
Q Consensus 167 g~--~~~~i~~~l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~-----~rl~~~~ 239 (284)
.. ..+.+...+..|.. |++...... +... ..+.+||+++| .+++.+|+.+|+.... .+. +.+...+
T Consensus 65 ~~~~~~~~~~~~~~~g~~-vv~~~~~~~--~~~~--~~~~vi~L~~~-~e~l~~R~~~r~~~~~-~~~~~~~~~~~~~~~ 137 (180)
T 3iij_A 65 DEDRVVDELDNQMREGGV-IVDYHGCDF--FPER--WFHIVFVLRTD-TNVLYERLETRGYNEK-KLTDNIQCEIFQVLY 137 (180)
T ss_dssp CHHHHHHHHHHHHHHCCE-EEECSCCTT--SCGG--GCSEEEEEECC-HHHHHHHHHHTTCCHH-HHHHHHHHHHTTHHH
T ss_pred ChHHHHHHHHHHHhcCCE-EEEechhhh--cchh--cCCEEEEEECC-HHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHH
Confidence 00 12234455666654 455433111 0001 24688999997 6999999999864322 111 1222222
Q ss_pred HHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 240 EEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 240 ~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.+.......|.++.+++.+++++.+.+.+++..
T Consensus 138 ~~~~~~y~~~~~i~~~~~~~~ev~~~v~~i~~~ 170 (180)
T 3iij_A 138 EEATASYKEEIVHQLPSNKPEELENNVDQILKW 170 (180)
T ss_dssp HHHHHHSCGGGEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 222111224777776667899994444444444
No 84
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.29 E-value=1.4e-11 Score=101.96 Aligned_cols=162 Identities=18% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCC-C-----CCCCcee---EecCHHHHHHhhccc-chhhh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP-G-----EENGKDY---YFVSKEEFLTMIDKN-ELLEY 158 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~-~-----~~~~~~~---~~~~~~~~~~~~~~~-~~~~~ 158 (284)
...+|+|+|++||||||+++.|++.++...+..+...+.... . ...|..+ ..+++..+...+... ....+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~ 90 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKK 90 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHH
Confidence 357899999999999999999998765323322222111000 0 0001110 013333333221110 00000
Q ss_pred hh--hcccccCCCHHHHHHHHHc-CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH
Q 023332 159 AL--VYGDYKGIPKKQIREYMAK-GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI 235 (284)
Q Consensus 159 ~~--~~~~~yg~~~~~i~~~l~~-g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl 235 (284)
.+ .+..+ ...+...+.. +..||+|+.+.....+... .+.+||+++| .+++.+|+ +
T Consensus 91 l~~i~hP~i----~~~~~~~~~~~~~~vv~d~pll~e~~~~~~---~d~vi~v~a~-~e~r~~Rl----------i---- 148 (192)
T 2grj_A 91 LELLVHPLM----KKRVQEIINKTSGLIVIEAALLKRMGLDQL---CDHVITVVAS-RETILKRN----------R---- 148 (192)
T ss_dssp HHHHHHHHH----HHHHHHHHHTCCEEEEEECTTTTTTTGGGG---CSEEEEEECC-HHHHHHHC----------S----
T ss_pred HHhhhCHHH----HHHHHHHHHHcCCEEEEEEeceeecChHHh---CCEEEEEECC-HHHHHHHH----------H----
Confidence 00 00000 0112222333 5578888764221122222 3578999997 68888888 1
Q ss_pred HHHHHH--hhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 236 ATAREE--IKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 236 ~~~~~e--~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
..+... .+....+|++|.|+ ++++++.+++.++++..
T Consensus 149 ~~q~~~~~~~~~~~AD~vI~n~-~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 149 EADRRLKFQEDIVPQGIVVANN-STLEDLEKKVEEVMKLV 187 (192)
T ss_dssp SHHHHHTTCTTCCCCSEEEECS-SCHHHHHHHHHHHHHHH
T ss_pred HhcCCchhhhHHhcCCEEEECC-CCHHHHHHHHHHHHHHH
Confidence 122223 23346789998776 89999999999998876
No 85
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.29 E-value=8.7e-12 Score=109.80 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=86.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+++|+|+|++||||||+++.|++.+.++..+..+..|....+...|..-. ..... ... .. ...
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~-~~~~~-~~~------~~---------~~~ 64 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYK-YTKKK-EGI------VT---------GMQ 64 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC----CCHHH-HHH------HH---------HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccc-cchhh-hhH------HH---------HHH
Confidence 47899999999999999999998543333333333332111100111000 00000 000 00 001
Q ss_pred HHHHHHHH---HcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHHHH
Q 023332 170 KKQIREYM---AKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT--ESREELLVRIATA 238 (284)
Q Consensus 170 ~~~i~~~l---~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~~~ 238 (284)
.+.+...+ ..|..+|+|+.. ..+..+....|.++.+||+++| .+++.+|+.+|.. .+.+.+.+++...
T Consensus 65 ~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~-~e~~~~R~~~R~~~~~~~e~i~~~~~~~ 143 (301)
T 1ltq_A 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP-WTELVKRNSKRGTKAVPIDVLRSMYKSM 143 (301)
T ss_dssp HHHHHHHTTSCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCC-HHHHHHHHHHCGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECC-HHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 22445666 788999999855 1233344445566789999996 6999999999873 3567777777665
Q ss_pred HHHhhcc------CCccEEEECCCCCHHHH
Q 023332 239 REEIKHV------KNFDYVVVNAEGKLDVA 262 (284)
Q Consensus 239 ~~e~~~~------~~~D~vivn~~~~~e~~ 262 (284)
....... .....++++.++++++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~ 173 (301)
T 1ltq_A 144 REYLGLPVYNGTPGKPKAVIFDVDGTLAKM 173 (301)
T ss_dssp HHHHTCCCCCCCTTSCEEEEEETBTTTBCC
T ss_pred hcccCCcceeccccccceEEEeCCCCcccc
Confidence 4432211 11245556666665443
No 86
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.28 E-value=1.8e-11 Score=102.61 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=91.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccC-CCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCCH
Q 023332 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM-RPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPK 170 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 170 (284)
.|+|+|++||||||+++.|++.++...+..++..|+. ..+...|..+ ...+..+.+..... ..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i--------~~~~~~g~~~~~~~--------~~ 65 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQA--------KDIMDAGKLVTDEL--------VI 65 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGG--------HHHHHHTCCCCHHH--------HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHH--------HHHHHCCCcCCHHH--------HH
Confidence 5899999999999999999987754444443433431 1111111110 00000111110000 01
Q ss_pred HHHHHHHHc---CCcEEEEecHHH---HHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc--------------------
Q 023332 171 KQIREYMAK---GYDIILRVDIQG---AQTLRRVLGDSAVFVFLMAESETALVERLVERK-------------------- 224 (284)
Q Consensus 171 ~~i~~~l~~---g~~vvld~~~~~---~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~-------------------- 224 (284)
..+...+.. +..+|+|+.... ...+.......+.+|++++| .+++.+|+..|.
T Consensus 66 ~~i~~~l~~~~~~~~~i~dg~~~~~~~~~~l~~~~~~~d~vi~l~~~-~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~ 144 (214)
T 1e4v_A 66 ALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDYVLEFDVP-DELIVDRIVGRRVHAPSGRVYHVKFNPPKVEG 144 (214)
T ss_dssp HHHHHHHTSGGGGGCEEEESCCCSHHHHHHHHHTTCCCSEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTBCCSSTT
T ss_pred HHHHHHHhccccCCCEEEeCCCCCHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHCCcccCCcCCcccccCCCCCccc
Confidence 122233333 357889974322 22233221134688999997 699999997653
Q ss_pred -------------cCCHHHHHHHHHHHHHHhh----ccCC------ccEEEECCCCCHHHHHHHHHHHH
Q 023332 225 -------------TESREELLVRIATAREEIK----HVKN------FDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 225 -------------~~~~~~i~~rl~~~~~e~~----~~~~------~D~vivn~~~~~e~~~~~i~~~i 270 (284)
.++.+.+.+|+..+..+.. +... ..++.+|++++++++.++|.+.+
T Consensus 145 ~~~~~~~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 145 KDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp BCTTTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 2346778888876554322 1111 23677889899999999998876
No 87
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.27 E-value=5.9e-12 Score=104.14 Aligned_cols=89 Identities=18% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCH
Q 023332 180 GYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKL 259 (284)
Q Consensus 180 g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~ 259 (284)
+..||+|+.......+.. ..+.+||+++| .+++.+|+.+|...+.+.+..++.......++...+|++| ++++++
T Consensus 106 ~~~vi~d~~~l~~~~~~~---~~d~~i~l~~~-~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~~~~ad~vI-d~~~~~ 180 (203)
T 1uf9_A 106 APLVFLEIPLLFEKGWEG---RLHGTLLVAAP-LEERVRRVMARSGLSREEVLARERAQMPEEEKRKRATWVL-ENTGSL 180 (203)
T ss_dssp CSEEEEECTTTTTTTCGG---GSSEEEEECCC-HHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHHHHHCSEEE-CCSSHH
T ss_pred CCEEEEEecceeccCchh---hCCEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHCCChhHHHHhCCEEE-ECCCCH
Confidence 467888875421111111 23588999997 6999999998865555566666654332222233568765 555699
Q ss_pred HHHHHHHHHHHHHH
Q 023332 260 DVAVKLVESIIDAE 273 (284)
Q Consensus 260 e~~~~~i~~~i~~~ 273 (284)
++++++|.+++...
T Consensus 181 ~~~~~~i~~~~~~~ 194 (203)
T 1uf9_A 181 EDLERALKAVLAEL 194 (203)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998754
No 88
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.27 E-value=1.2e-11 Score=99.91 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=36.8
Q ss_pred eEEEEEecCCHHHHHHHHHhhcc-------CC-HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVERKT-------ES-REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R~~-------~~-~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..++++++| .+++.+|+.+|.. +. .+.+...+..... .+...+|++|.++++++++++++|.+++..
T Consensus 98 ~~~i~l~~~-~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~--~~~~~a~~~id~~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 98 GVVVYLETT-IEKQLARTQRDKKRPLLHVETPPREVLEALANERNP--LYEEIADVTIRTDDQSAKVVANQIIHMLES 172 (173)
T ss_dssp SEEEECCCC-HHHHHSCC------CCSSSSCCCHHHHHHHHHHHHH--HHHHHCSEEC-----CHHHHHHHHHHHHC-
T ss_pred CEEEEEeCC-HHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHH--HHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 468899997 6999999987631 11 3444444332211 122335777766557999999999988753
No 89
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.27 E-value=1.3e-11 Score=113.91 Aligned_cols=126 Identities=13% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..+.+|+|+|++||||||+++.|++.++. ..+..+ .+. .|.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~-~~i~~D---------------------~~~-----------------~~~ 296 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGY-VHVNRD---------------------TLG-----------------SWQ 296 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTC-EECCGG---------------------GSC-----------------SHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCc-EEEccc---------------------hHH-----------------HHH
Confidence 45789999999999999999999887642 221111 000 011
Q ss_pred CCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc------CCHHHHHHHH
Q 023332 168 IPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT------ESREELLVRI 235 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~------~~~~~i~~rl 235 (284)
.....+...+..|..||+|+.. ..+..+....|....+|++++| .+++.+|+..|.. ...+.+..++
T Consensus 297 ~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~-~e~l~~R~~~R~~~~~~~~~~~~~~~~~~ 375 (416)
T 3zvl_A 297 RCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT-IEQARHNNRFREMTDPSHAPVSDMVMFSY 375 (416)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC-HHHHHHHHHHHHHHCTTCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC-HHHHHHHHHhhcccCCCcCCCCHHHHHHH
Confidence 1223456778899999999764 3444555666788889999997 6999999998864 2234444444
Q ss_pred HHHHHHhhccCCccEEEE
Q 023332 236 ATAREEIKHVKNFDYVVV 253 (284)
Q Consensus 236 ~~~~~e~~~~~~~D~viv 253 (284)
....++......+|.|+.
T Consensus 376 ~~~~e~P~~~E~fd~v~~ 393 (416)
T 3zvl_A 376 RKQFEPPTLAEGFLEILE 393 (416)
T ss_dssp HHHCCCCCGGGTCSEEEE
T ss_pred HHhcCCCCcccCCcEEEE
Confidence 443333333456776553
No 90
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.25 E-value=6.5e-11 Score=95.38 Aligned_cols=69 Identities=16% Similarity=0.141 Sum_probs=45.2
Q ss_pred eEEEEEecCCHHHHHHHHH--hh-cc---CCHHHHHHHHHHHHHHhhc-cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLV--ER-KT---ESREELLVRIATAREEIKH-VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~--~R-~~---~~~~~i~~rl~~~~~e~~~-~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+.+||+++| .+++.+|+. .| .. ...+...+++...+.+... ...+|++|.++.+++++++++|.+++..
T Consensus 95 ~~~i~l~~~-~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Id~~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 95 GTVVYLFAP-AEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp SEEEEEECC-HHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCSEEEETTSCHHHHHHHHHHHTTC
T ss_pred CeEEEEECC-HHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHhCcEEEECCCCCHHHHHHHHHHHhcc
Confidence 588999997 699999998 77 21 2223344555544433221 1126777766557999999999888753
No 91
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.25 E-value=9.4e-12 Score=107.24 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=54.1
Q ss_pred HcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHh-----hccCCHHHHHHHHHHHHHH-----hhcc-C
Q 023332 178 AKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVE-----RKTESREELLVRIATAREE-----IKHV-K 246 (284)
Q Consensus 178 ~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~-----R~~~~~~~i~~rl~~~~~e-----~~~~-~ 246 (284)
..+..+|+++...... .++..++.||+++| .+++.+|+.+ +...+.+++.+++...... .... .
T Consensus 143 a~~~~~V~~gr~~~~~----v~~~~~~~ifl~A~-~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~ 217 (252)
T 4e22_A 143 REAPGLIADGRDMGTI----VFPDAPVKIFLDAS-SQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVP 217 (252)
T ss_dssp CCSSCEEEEESSCCCC----CSTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCC
T ss_pred hhCCCEEEEeceecee----ecCCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhc
Confidence 3466788887432110 11234688999997 6888777654 4445666666655443321 1122 2
Q ss_pred Ccc-EEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 247 NFD-YVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 247 ~~D-~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
..| ++|.++..++++++++|.++++...
T Consensus 218 ~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 218 AADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp CTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred cCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 345 5555554489999999999997653
No 92
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.23 E-value=1.2e-09 Score=92.69 Aligned_cols=170 Identities=15% Similarity=0.185 Sum_probs=91.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..+++|+|+|++||||||+++.|++.++...+..++..++...+ +..+ ...+...+..+......
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~---~~~~----g~~i~~~~~~g~~~~~~-------- 78 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVAS---GSEL----GKKLKATMDAGKLVSDE-------- 78 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH---TCHH----HHHHHHHHHTTCCCCHH--------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc---CChh----HHHHHHHHHCCCcCCHH--------
Confidence 44678999999999999999999988752222211111110000 0000 00011111111100000
Q ss_pred CCHHHHHHHHH---cCCcEEEEecHH------HHHHHHHHh-CCCeEEEEEecCCHHHHHHHHHhhc-------------
Q 023332 168 IPKKQIREYMA---KGYDIILRVDIQ------GAQTLRRVL-GDSAVFVFLMAESETALVERLVERK------------- 224 (284)
Q Consensus 168 ~~~~~i~~~l~---~g~~vvld~~~~------~~~~l~~~~-g~~~~~I~l~~p~~~~l~~Rl~~R~------------- 224 (284)
.....+...+. .+..+|+|+... .+..+.... ...+.+|++++| .+++.+|+..|.
T Consensus 79 ~~~~~i~~~l~~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~-~e~~~~Rl~~R~~~~~~g~~y~~~~ 157 (233)
T 1ak2_A 79 MVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIP-DSLLIRRITGRLIHPQSGRSYHEEF 157 (233)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECC-HHHHHHHHHTCEECTTTCCEEBTTT
T ss_pred HHHHHHHHHHhcccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHHcCCcCCccCCcccccc
Confidence 00112222232 246789996331 122222222 245689999997 699999998773
Q ss_pred --------------------cCCHHHHHHHHHHHHHHh----hccC-CccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 225 --------------------TESREELLVRIATAREEI----KHVK-NFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 225 --------------------~~~~~~i~~rl~~~~~e~----~~~~-~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.+..+.+.+|+..+.... .+.. ..-++++|+++++++++++|.+.++..
T Consensus 158 ~pp~~~~~~~~~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~~~~~v~~~I~~~l~~~ 231 (233)
T 1ak2_A 158 NPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKA 231 (233)
T ss_dssp BCCSSTTBCTTTCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCCccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHhh
Confidence 124567777776544321 1111 112566788899999999999998754
No 93
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.20 E-value=2.5e-11 Score=100.73 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=82.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC--Cce--eEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD--SLR--FVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~--~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+|.+|+|+|+|||||||+++.|++.++ +.. ++..+..+.... . .+. .+.+......
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~---~--~~~-~~~~~~~~~~------------- 83 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLN---R--DLS-FKAEDRAENI------------- 83 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT---T--TCC-SSHHHHHHHH-------------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhh---c--ccC-cChHHHHHHH-------------
Confidence 5699999999999999999999998763 111 221111111000 0 001 1111111100
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecH---HHHHHHHHHh-CCCeEEEEEecCCHHHHHHHH------HhhccCCHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDI---QGAQTLRRVL-GDSAVFVFLMAESETALVERL------VERKTESREELLV 233 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~---~~~~~l~~~~-g~~~~~I~l~~p~~~~l~~Rl------~~R~~~~~~~i~~ 233 (284)
.............|..++..... .....+.... +.....||+++| .+++.+|+ ..|...... . .
T Consensus 84 ---~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~-~e~~~~R~~~~l~~~~r~~~~~~-~-~ 157 (200)
T 3uie_A 84 ---RRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVP-LSVCEARDPKGLYKLARAGKIKG-F-T 157 (200)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHCTTSHHHHHHTTSSCS-C-B
T ss_pred ---HHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCC-HHHHHHhcccchHHHHhcCCCCC-C-C
Confidence 00011233445677777766432 2223333332 125677999997 69999997 333221100 0 0
Q ss_pred HHHHHHHHhhccCCccEEEECCC-CCHHHHHHHHHHHHHHHH
Q 023332 234 RIATAREEIKHVKNFDYVVVNAE-GKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 234 rl~~~~~e~~~~~~~D~vivn~~-~~~e~~~~~i~~~i~~~~ 274 (284)
.+. ..++.....|++|..++ .++++++++|.+.++...
T Consensus 158 ~~~---~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~~ 196 (200)
T 3uie_A 158 GID---DPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNKG 196 (200)
T ss_dssp TTT---BCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHHT
T ss_pred CCC---CcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 000 01111224566665554 499999999999997643
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.19 E-value=1.6e-10 Score=96.30 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=25.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+|.+|+|+|+||||||||++.|++.++
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346789999999999999999999998764
No 95
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.19 E-value=4.1e-11 Score=106.74 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCc---------eeEeeeccccCCCCCCCCceeEecCHHHH-HHhhcccchhh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSL---------RFVVTATSRPMRPGEENGKDYYFVSKEEF-LTMIDKNELLE 157 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~---------~~~~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 157 (284)
.++.+|+|+||+|||||||+..|++.++.. +...+.++++++..+..|..+++++..++ ...+....|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 356799999999999999999999988632 22345677888888889999988765554 33333344444
Q ss_pred hhhhcccccCCCHHHHHHHHHcCCcEEEEecHH-HHHHHHH---------------------HhCCCeEEEEEecCCHHH
Q 023332 158 YALVYGDYKGIPKKQIREYMAKGYDIILRVDIQ-GAQTLRR---------------------VLGDSAVFVFLMAESETA 215 (284)
Q Consensus 158 ~~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~-~~~~l~~---------------------~~g~~~~~I~l~~p~~~~ 215 (284)
.. .+.++++...|+.+|+.+... .+..+.. .......+|++.++ .++
T Consensus 118 ~a----------~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~-re~ 186 (339)
T 3a8t_A 118 LA----------GKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVS-VKV 186 (339)
T ss_dssp HH----------HHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECC-HHH
T ss_pred HH----------HHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCC-HHH
Confidence 32 245667778899888886542 2222221 01134567888875 799
Q ss_pred HHHHHHhhc
Q 023332 216 LVERLVERK 224 (284)
Q Consensus 216 l~~Rl~~R~ 224 (284)
|.+||.+|.
T Consensus 187 L~~RI~~R~ 195 (339)
T 3a8t_A 187 LTDYLAKRV 195 (339)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999884
No 96
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.19 E-value=2e-11 Score=102.10 Aligned_cols=154 Identities=16% Similarity=0.063 Sum_probs=81.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-C----ceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-S----LRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~----~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
.+|++|+|+|++||||||+++.|++.++ . ......+..+..... ... + ....-
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~---~~~--~-~~~~r---------------- 80 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---DLG--F-SEADR---------------- 80 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---TCC--S-SHHHH----------------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc---ccC--C-CHHHH----------------
Confidence 4589999999999999999999988764 1 111111111111100 000 0 00000
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHH------HhCCCeEEEEEecCCHHHHHHHHHhhccCCHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRR------VLGDSAVFVFLMAESETALVERLVERKTESREE 230 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~------~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~ 230 (284)
...+......+...++.|..||+|... ..+..+.. ..+.++.+||+++| .+++.+|+ .|.
T Consensus 81 ~~~~~~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~-~e~~~~R~-~r~------ 152 (211)
T 1m7g_A 81 NENIRRIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVP-VEVAEQRD-PKG------ 152 (211)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECC-HHHHHTSC-TTC------
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCC-HHHHHHhh-hHH------
Confidence 000000112244567889999999431 12223322 12345789999997 68998885 111
Q ss_pred HHHHHHHHHH--------HhhccCCccEEEECCCC-CHHHHHHHHHHHHHH
Q 023332 231 LLVRIATARE--------EIKHVKNFDYVVVNAEG-KLDVAVKLVESIIDA 272 (284)
Q Consensus 231 i~~rl~~~~~--------e~~~~~~~D~vivn~~~-~~e~~~~~i~~~i~~ 272 (284)
+..+...... .++.....+++| |+++ ++++++++|.+.+..
T Consensus 153 ~~~~~r~~~~~~~~~~~~~y~~~~~~~~~I-Dt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 153 LYKKAREGVIKEFTGISAPYEAPANPEVHV-KNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp HHHHHHHTSSSSCBTTTBCCCCCSSCSEEE-ECSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhhhhhhhhccCCCCCeEEE-ECCCCCHHHHHHHHHHHHHH
Confidence 1111110000 001112346554 5556 999999999999876
No 97
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.19 E-value=7.6e-10 Score=92.05 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=90.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc-hhh--------hhh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE-LLE--------YAL 160 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~ 160 (284)
..+|+|.|++||||||+++.|++.++...+. ....+.. ....|. +.+.+........ |+. ...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~--a~~~g~-----~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 77 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEV--AKDGRY-----SKEVLERFDEKPMNFAFIPVPAGGTTIS 77 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHT--TCC------------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHH--HHhcCC-----CHHHHHHHhhhchhHHHHHhcccccccc
Confidence 4689999999999999999999988632222 2221110 000111 1111111000000 110 000
Q ss_pred hcccccCCCHHHHHHHHH-cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHH
Q 023332 161 VYGDYKGIPKKQIREYMA-KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAR 239 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~-~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~ 239 (284)
....++....+.++++.. ...++|+++....+ +.... ...+.|||++| .+++.+|+.++...+.++..+.+....
T Consensus 78 ~~~~~~~~~~~~i~~la~~~~~~~Vi~Gr~g~~--vl~~~-~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d 153 (201)
T 3fdi_A 78 LEQDIAIRQFNFIRKKANEEKESFVIVGRCAEE--ILSDN-PNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMD 153 (201)
T ss_dssp --CHHHHHHHHHHHHHHHTSCCCEEEESTTHHH--HTTTC-TTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhcCCCEEEEECCcch--hcCCC-CCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 000111112233344441 45678888764332 11111 24688999997 799999998876666655555554322
Q ss_pred H---Hh-h--------ccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 240 E---EI-K--------HVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 240 ~---e~-~--------~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
. .. . ....+|++|.++..+++++++.|.++++.
T Consensus 154 ~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 154 KMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp HHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 2 11 1 11247888877767999999999998864
No 98
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.17 E-value=4.5e-11 Score=97.53 Aligned_cols=161 Identities=13% Similarity=0.107 Sum_probs=78.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCCC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIP 169 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~ 169 (284)
+++|+|+|++||||||+++.|++.++...+..+...+.. . |. +...+.. ..+.. ++.. ..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~-~----g~-----~~~~~~~--~~g~~-----~~~~---~~ 61 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQR-T----GR-----SIADIFA--TDGEQ-----EFRR---IE 61 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH-H----SS-----CHHHHHH--HHCHH-----HHHH---HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHH-c----CC-----CHHHHHH--HhChH-----HHHH---HH
Confidence 356999999999999999999987753222222211110 0 00 0000000 00000 0000 00
Q ss_pred HHHHHHHHHcCCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC---CHHHHHHHHHHHHHH--hh
Q 023332 170 KKQIREYMAKGYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERKTE---SREELLVRIATAREE--IK 243 (284)
Q Consensus 170 ~~~i~~~l~~g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~---~~~~i~~rl~~~~~e--~~ 243 (284)
...++.++.....++..+....+ ......+. ...+|||++| .+++.+|+.+|... ......+++.....+ ..
T Consensus 62 ~~~~~~~~~~~~~vi~~g~~~v~~~~~~~~l~-~~~vV~L~~~-~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~ 139 (184)
T 2iyv_A 62 EDVVRAALADHDGVLSLGGGAVTSPGVRAALA-GHTVVYLEIS-AAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPL 139 (184)
T ss_dssp HHHHHHHHHHCCSEEECCTTGGGSHHHHHHHT-TSCEEEEECC-HHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEecCCcEEcCHHHHHHHc-CCeEEEEeCC-HHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHH
Confidence 11233344444444433321100 11112221 3478999997 69999999887521 111112233332221 11
Q ss_pred ccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 244 HVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 244 ~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
+...+|++|.++..++++++++|.+++..
T Consensus 140 ~~~~~~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 140 YRRVATMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp HHHHCSEEEECSSSCHHHHHHHHHTTSCC
T ss_pred HhccCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 12346777766547999999999887743
No 99
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.17 E-value=1.3e-10 Score=93.41 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=41.5
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhc-----cCC-HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERK-----TES-REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~-----~~~-~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i 270 (284)
..+.+||+++| .+++.+|+.+|. ... .+.+.+.+...... +...+|++|.++ +++++++++|.+++
T Consensus 96 ~~~~vi~l~~~-~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~--~~~~a~~~Id~~-~~~e~~~~~I~~~l 167 (168)
T 1zuh_A 96 GLGTTFYLKMD-FETLIKRLNQKEREKRPLLNNLTQAKELFEKRQAL--YEKNASFIIDAR-GGLNNSLKQVLQFI 167 (168)
T ss_dssp TSEEEEEEECC-HHHHHHHHCC--------CCTTHHHHHHHHHHHHH--HHHTCSEEEEGG-GCHHHHHHHHHHC-
T ss_pred cCCEEEEEECC-HHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHH--HHHHCCEEEECC-CCHHHHHHHHHHHh
Confidence 35688999997 699999998772 112 34444444332221 223468887766 59999999988754
No 100
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.15 E-value=1.3e-10 Score=98.17 Aligned_cols=97 Identities=21% Similarity=0.307 Sum_probs=61.8
Q ss_pred HHHHHHHcCCcEEEEecHHHHHHHH--HHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHH---H-hh--
Q 023332 172 QIREYMAKGYDIILRVDIQGAQTLR--RVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE---E-IK-- 243 (284)
Q Consensus 172 ~i~~~l~~g~~vvld~~~~~~~~l~--~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~---e-~~-- 243 (284)
.++++.+.+ ++|+++...++ -+. ... ...+.|||++| .+++.+|+.++...+.++..+.+..... . ..
T Consensus 108 ~i~~la~~~-~~Vi~Grggg~-vl~~~~~~-~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~y 183 (223)
T 3hdt_A 108 VMRELAESE-PCIFVGRAAGY-VLDQDEDI-ERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYF 183 (223)
T ss_dssp HHHHHHHHS-CEEEESTTHHH-HHHHCTTC-CEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCC-CEEEEeCCcch-hcccccCC-CCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444 68888665332 121 111 24688999997 7999999988766565555444443221 1 11
Q ss_pred ------ccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 244 ------HVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 244 ------~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
....+|++|.++..+++++++.|.++++.
T Consensus 184 tg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 184 TGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp HSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 11357888877767999999999999875
No 101
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.15 E-value=3e-10 Score=97.20 Aligned_cols=88 Identities=17% Similarity=0.224 Sum_probs=51.3
Q ss_pred CcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc---cCCHHHHHHHHHHHH-HH-----hhccCCccE
Q 023332 181 YDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERK---TESREELLVRIATAR-EE-----IKHVKNFDY 250 (284)
Q Consensus 181 ~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~---~~~~~~i~~rl~~~~-~e-----~~~~~~~D~ 250 (284)
..+|+|+..... ..+... ....|++.+++ +....|...|. +.+.+++.+++.... .. .+....+|+
T Consensus 135 ~~lilDg~~~~~~~~l~~~---~~~~i~v~th~-~~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~ 210 (245)
T 2jeo_A 135 DVVLFEGILVFYSQEIRDM---FHLRLFVDTDS-DVRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADV 210 (245)
T ss_dssp SEEEEECTTTTTSHHHHTT---CSEEEEEECCH-HHHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSE
T ss_pred CEEEEeCccccccHHHHHh---cCeEEEEECCH-HHHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceE
Confidence 468888644221 223322 25778888874 45555544453 346677766665422 11 123467899
Q ss_pred EE---ECCCCCHHHHHHHHHHHHHH
Q 023332 251 VV---VNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 251 vi---vn~~~~~e~~~~~i~~~i~~ 272 (284)
|| ++++++++++++++.++++.
T Consensus 211 vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 211 IIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp EEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCccHHHHHHHHHHHHHHhc
Confidence 98 24457889999999888864
No 102
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.15 E-value=7.1e-11 Score=101.79 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=69.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeEeee---------ccccCCCCCCCCceeEecCHHHHHH-hhcccchhhhhh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTA---------TSRPMRPGEENGKDYYFVSKEEFLT-MIDKNELLEYAL 160 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~---------~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 160 (284)
++|+|+||+||||||+++.|++.++...+..+. ++.++...+..+..+.+++...+.. .+....|...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~-- 79 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRR-- 79 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHH--
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHH--
Confidence 479999999999999999999887533332222 1222222333444444433211110 0000111111
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEecH-HHHHHHHHH----hCCCeEEEEEecCCHHHHHHHHHhhcc
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVDI-QGAQTLRRV----LGDSAVFVFLMAESETALVERLVERKT 225 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~~-~~~~~l~~~----~g~~~~~I~l~~p~~~~l~~Rl~~R~~ 225 (284)
....+ +++..|..+|+++.. ..+..+... .+....+||+++|..+++.+|+.+|..
T Consensus 80 --------~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 80 --------LIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp --------HHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred --------HHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 11233 445678888888654 333333333 234567899999865899999998863
No 103
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.14 E-value=2.5e-10 Score=93.53 Aligned_cols=26 Identities=38% Similarity=0.690 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
|++++|+|||||||||+++.|++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC
Confidence 67999999999999999999987543
No 104
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.14 E-value=8.7e-10 Score=93.72 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=55.5
Q ss_pred HHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHH----Hhhc-cCCHHHHHHHHHH-HHHHhhc----cC
Q 023332 177 MAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERL----VERK-TESREELLVRIAT-AREEIKH----VK 246 (284)
Q Consensus 177 l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl----~~R~-~~~~~~i~~rl~~-~~~e~~~----~~ 246 (284)
+..|..+|+|+..... .+. .....+||+++| .+++.+|+ .+|+ ..+.+.+.+++.. ......+ ..
T Consensus 132 ~~~~~~~v~~g~~~~~-~~l---~~~d~vi~L~a~-~e~~~~R~~~~~~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~ 206 (236)
T 1q3t_A 132 IAQQGGIVMDGRDIGT-VVL---PQAELKIFLVAS-VDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLK 206 (236)
T ss_dssp HHTTSCEEEECSSCSS-SSG---GGCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCS
T ss_pred hcccCCEEEECCcchh-hhc---cCCCEEEEEECC-HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhccccccc
Confidence 4456788888643211 011 123578999997 68888887 4566 3466666666654 3333221 22
Q ss_pred -Ccc-EEEECCCCCHHHHHHHHHHHHHH
Q 023332 247 -NFD-YVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 247 -~~D-~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..| ++|.|+..++++++++|.++++.
T Consensus 207 ~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 207 QAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp CCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 235 55544434999999999998864
No 105
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.13 E-value=1.1e-09 Score=90.95 Aligned_cols=175 Identities=14% Similarity=0.007 Sum_probs=85.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCC-C--CCCc-e--e-EecCHHHHHHhhcccchhhh
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG-E--ENGK-D--Y-YFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~-~--~~~~-~--~-~~~~~~~~~~~~~~~~~~~~ 158 (284)
...+|.+|+|+|++||||||+++.|++.++....+..+....+... . ..+. . . ..++...+...+.. .+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~--~l~~ 94 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISC--WMES 94 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHH--HHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHH--HHhC
Confidence 4567899999999999999999999997743333322211111000 0 0000 0 0 00112222111100 0000
Q ss_pred hhhcccccCCCHHHHHHHHHcCCcEEEEecHHHH-HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCH---HHHHHH
Q 023332 159 ALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGA-QTLRRVLGDSAVFVFLMAESETALVERLVERKTESR---EELLVR 234 (284)
Q Consensus 159 ~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~~~~-~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~---~~i~~r 234 (284)
. . .+.... .+.. ......+|+|+.+... ..+. ...+.+||+++| .+++.+|+..|....+ +.+..+
T Consensus 95 ~-~---~~~~~~-~~~~-~~~~~~vi~eg~~~~~~~~~~---~~~d~~i~l~~~-~~~~~~R~~~R~~~~e~~~~~~~~~ 164 (207)
T 2qt1_A 95 A-R---HSVVST-DQES-AEEIPILIIEGFLLFNYKPLD---TIWNRSYFLTIP-YEECKRRRSTRVYQPPDSPGYFDGH 164 (207)
T ss_dssp H-T---TSSCCC-------CCCCEEEEECTTCTTCGGGT---TTCSEEEEEECC-HHHHHHHHHHSCCSSCCCTTHHHHT
T ss_pred C-C---CCCcCC-Ceee-cCCCCEEEEeehHHcCcHHHH---HhcCeeEEEECC-HHHHHHHHHHcCCCccchHHHHHHH
Confidence 0 0 000000 0001 2235678888854221 1121 234688999997 6888999988863221 112211
Q ss_pred HHHH-HHHhh-ccCCccE-EEECCCCCHHHHHHHHHHHHHH
Q 023332 235 IATA-REEIK-HVKNFDY-VVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 235 l~~~-~~e~~-~~~~~D~-vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.... ....+ ....+|. +++|++++++++.++|.+.+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 165 VWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLIQ 205 (207)
T ss_dssp HHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHHh
Confidence 1111 11111 1223443 4456668999999999988753
No 106
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.12 E-value=3.8e-10 Score=94.92 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=50.0
Q ss_pred cCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHH----HhhccC-CHHHHHHHHHH----HHH-HhhccCC-
Q 023332 179 KGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERL----VERKTE-SREELLVRIAT----ARE-EIKHVKN- 247 (284)
Q Consensus 179 ~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl----~~R~~~-~~~~i~~rl~~----~~~-e~~~~~~- 247 (284)
.+..+|+|+.... . ..+...+.+||+++| .+++.+|+ ..|+.. +.+...+++.. .+. +.++...
T Consensus 122 ~~~~~vldg~~~~-~---~~~~~~d~~i~l~~~-~e~~~~R~~~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~ 196 (227)
T 1cke_A 122 ELPGLIADGRDMG-T---VVFPDAPVKIFLDAS-SEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPA 196 (227)
T ss_dssp CTTCEEEEESSCC-C---CCCTTCSEEEEEECC-HHHHHHHHHHHHHHHTCCCCHHHHHHHHC-------------CCCC
T ss_pred hCCCEEEECCCcc-c---eEecCCCEEEEEeCC-HHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCC
Confidence 4568899986311 0 012235688999997 58888883 345431 34444333332 221 2122222
Q ss_pred ccEEEECCC-CCHHHHHHHHHHHHHHH
Q 023332 248 FDYVVVNAE-GKLDVAVKLVESIIDAE 273 (284)
Q Consensus 248 ~D~vivn~~-~~~e~~~~~i~~~i~~~ 273 (284)
++.+++|++ +++++++++|.+++++.
T Consensus 197 ~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 197 ADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp TTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 233445555 79999999999998764
No 107
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.11 E-value=1.9e-09 Score=89.17 Aligned_cols=86 Identities=20% Similarity=0.151 Sum_probs=55.3
Q ss_pred CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHh-hc-cCCcc-EEEECCCC
Q 023332 181 YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEI-KH-VKNFD-YVVVNAEG 257 (284)
Q Consensus 181 ~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~-~~-~~~~D-~vivn~~~ 257 (284)
..+|+|+.... .. .+...+.+||+++| .+++.+|+..|...+.+++.+++....... .. ....| ++|.|+..
T Consensus 119 ~~~vi~g~~~~-~~---~~~~~d~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~~ 193 (208)
T 3ake_A 119 PPFVAEGRDMG-TA---VFPEAAHKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQSAPAPDALVLDTGGM 193 (208)
T ss_dssp SCEEEEESSCC-CC---CCTTCSEEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CCCCCTTCEEEETTTS
T ss_pred CCEEEEcccee-EE---EecCCcEEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcccCCCCEEEEECCCC
Confidence 57888876432 00 11234588999997 699999998887666666766665422111 11 33466 55544424
Q ss_pred CHHHHHHHHHHHHH
Q 023332 258 KLDVAVKLVESIID 271 (284)
Q Consensus 258 ~~e~~~~~i~~~i~ 271 (284)
++++++++|.++++
T Consensus 194 ~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 194 TLDEVVAWVLAHIR 207 (208)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998874
No 108
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.10 E-value=2.6e-10 Score=97.60 Aligned_cols=176 Identities=16% Similarity=0.190 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
+|++|+|+|+|||||||+++.|++.++..........+. +...+..+ ...+......+.+.+...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~---~~~~~~~~----~~~i~~~~~~~~~~~~~~v------- 91 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE---NIKASTEV----GEMAKQYIEKSLLVPDHVI------- 91 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH---HHHTTCHH----HHHHHHHHHTTCCCCHHHH-------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH---HHhcCChH----HHHHHHHHHcCCCCCHHHH-------
Confidence 478999999999999999999997664221111111110 00000000 0001111111111111110
Q ss_pred CHHHHHHHHH--cCCcEEEEecHHHH---HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc-------------------
Q 023332 169 PKKQIREYMA--KGYDIILRVDIQGA---QTLRRVLGDSAVFVFLMAESETALVERLVERK------------------- 224 (284)
Q Consensus 169 ~~~~i~~~l~--~g~~vvld~~~~~~---~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~------------------- 224 (284)
.+.+...+. .+..+++++..... ..+.... ....+|++++| .+++.+|+..|.
T Consensus 92 -~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~-~~~~vi~L~~~-~~~~l~r~~~r~~~~lSgrv~al~~~~P~~l 168 (246)
T 2bbw_A 92 -TRLMMSELENRRGQHWLLDGFPRTLGQAEALDKIC-EVDLVISLNIP-FETLKDRLSRRWIHPPSGRVYNLDFNPPHVH 168 (246)
T ss_dssp -HHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTC-CCCEEEEEECC-HHHHHHHHHTEEEETTTTEEEETTTSCCSST
T ss_pred -HHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhc-CCCEEEEEECC-HHHHHHHHHcCCCcCCCCCccccccCCCccc
Confidence 111222222 35567778643221 2222112 34578999997 588889987652
Q ss_pred --------------cCCHHHHHHHHHHHHHHhh----ccCCc-cEEEECCCCCHHHHHHHHHHHHHHHHhhhhhhcc
Q 023332 225 --------------TESREELLVRIATAREEIK----HVKNF-DYVVVNAEGKLDVAVKLVESIIDAEKAKVQQRSA 282 (284)
Q Consensus 225 --------------~~~~~~i~~rl~~~~~e~~----~~~~~-D~vivn~~~~~e~~~~~i~~~i~~~~~~~~~~~~ 282 (284)
..+.+.+.+++.....+.. +.... -++.+|++++ ++++++|.+++.+.......|.|
T Consensus 169 llD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~~~~~~~~~~~~ 244 (246)
T 2bbw_A 169 GIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFSNKITPIQSKEA 244 (246)
T ss_dssp TBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHHTTSCCCCCGGG
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHHhhCCCCCcccc
Confidence 1234566666655433211 11111 2677788777 99999999999887777776665
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.09 E-value=9e-11 Score=95.06 Aligned_cols=69 Identities=10% Similarity=0.128 Sum_probs=42.1
Q ss_pred eEEEEEecCCHHHHHHHHHhhc--cC---C-HHHHHHHHHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVERK--TE---S-REELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R~--~~---~-~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
..+||+++| .+++.+|+.+|. .. . .+.+.+.+...... +...+|++|.++..++++++++|.+.++...
T Consensus 94 ~~~i~l~~~-~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~~r~~~--y~~~~~~~Idt~~~~~eev~~~I~~~l~~~~ 168 (175)
T 1via_A 94 GFCIYLKAD-FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSK--YEQKANFILNIENKNIDELLSEIKKVIKEGG 168 (175)
T ss_dssp CEEEEEECC-HHHHTTCCCGGGTTTSCTTCCHHHHHHHHHHHHHH--HHHHCSEEEECTTCCHHHHHHHHHHHHC---
T ss_pred CEEEEEeCC-HHHHHHHHhcccCCCCCCcccHHHHHHHHHHHHHH--HHhcCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 578999997 699999997762 11 1 33343333321111 1123577765554799999999999987654
No 110
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.09 E-value=4.5e-11 Score=99.32 Aligned_cols=70 Identities=11% Similarity=0.070 Sum_probs=31.0
Q ss_pred HcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHH-HHHHH-------HhhccCCcc
Q 023332 178 AKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI-ATARE-------EIKHVKNFD 249 (284)
Q Consensus 178 ~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl-~~~~~-------e~~~~~~~D 249 (284)
..+..||+|+.+.....+... .+.+|||++| .+++.+|+.+|. +++..++ ..+.. ..+....+|
T Consensus 123 ~~~~~vIveg~~l~~~~~~~~---~d~~i~v~~~-~~~~~~R~~~R~----~~~~~~~~~~~~~~~~~y~~~~~~~~~AD 194 (201)
T 1rz3_A 123 SDSDMIMIEGVFLQRKEWRPF---FDFVVYLDCP-REIRFARENDQV----KQNIQKFINRYWKAEDYYLETEEPIKRAD 194 (201)
T ss_dssp TTCSEEEEEETTTTSTTTGGG---CSEEEEECCC-------------------CHHHHHHHHHHHHHHHHHHHCHHHHCS
T ss_pred CCCcEEEEechhhccHHHHhh---cCEEEEEeCC-HHHHHHHHhcCC----HHHHHHHHhheeHHHHHHhCCCCcHhhCc
Confidence 346789999977432222222 3588999998 489999999987 2333444 22222 122235789
Q ss_pred EEEECC
Q 023332 250 YVVVNA 255 (284)
Q Consensus 250 ~vivn~ 255 (284)
+||.|+
T Consensus 195 ~vI~N~ 200 (201)
T 1rz3_A 195 VVFDMT 200 (201)
T ss_dssp EEEC--
T ss_pred EEecCC
Confidence 998765
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.09 E-value=7.1e-11 Score=96.77 Aligned_cols=166 Identities=14% Similarity=0.172 Sum_probs=84.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeecc--ccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATS--RPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
.+.+|++++|+|+|||||||+++.|++.++ .+.+..++. ..... .+....++..... +...+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~-~g~i~i~~d~~~~~~~---~~~~~~~~~~~~~----------~~~~v~~ 70 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG-VPKVHFHSDDLWGYIK---HGRIDPWLPQSHQ----------QNRMIMQ 70 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS-SCEEEECTTHHHHTCC---SSCCCTTSSSHHH----------HHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC-CCeEEEcccchhhhhh---cccccCCccchhh----------hhHHHHH
Confidence 357799999999999999999999998743 222211111 00000 0000001110000 0111111
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHH--HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccC---CHHHHHHHHHHH
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQ--GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTE---SREELLVRIATA 238 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~--~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~---~~~~i~~rl~~~ 238 (284)
+. ..........|..+++|..+. .+..+.. .+.....+++.++ .+++..|+..|... +.+.+ ...
T Consensus 71 ~l----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ls~~~~-~~v~~~R~~~r~~~~lld~~~~----~~~ 140 (191)
T 1zp6_A 71 IA----ADVAGRYAKEGYFVILDGVVRPDWLPAFTA-LARPLHYIVLRTT-AAEAIERCLDRGGDSLSDPLVV----ADL 140 (191)
T ss_dssp HH----HHHHHHHHHTSCEEEECSCCCTTTTHHHHT-TCSCEEEEEEECC-HHHHHHHHHTTCTTSCCCHHHH----HHH
T ss_pred HH----HHHHHHHhccCCeEEEeccCcHHHHHHHHh-cCCCeEEEEecCC-HHHHHHHHHhcCCCccCCHHHH----HHH
Confidence 11 001122344566777776332 1122221 1345567888886 79999999888543 22222 222
Q ss_pred HHHhhccCC-ccEEEECCCCCHHHHHHHHHHHHHHHHh
Q 023332 239 REEIKHVKN-FDYVVVNAEGKLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 239 ~~e~~~~~~-~D~vivn~~~~~e~~~~~i~~~i~~~~~ 275 (284)
...+..... .+++|.+++.++++++++|.+.+.....
T Consensus 141 ~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~~~l~~~~~ 178 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVSGKDTDQALQSAINALQSGRF 178 (191)
T ss_dssp HHHTTCCGGGGGGEEECTTCCTTTTTTTTHHHHHHTTS
T ss_pred HHHHhccCcccccEEECCCCCHHHHHHHHHHHHHhhhh
Confidence 223322222 2455554446899999999999876543
No 112
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.08 E-value=2.1e-10 Score=97.52 Aligned_cols=88 Identities=16% Similarity=0.194 Sum_probs=53.7
Q ss_pred CcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHh-----hccCCHHHHHHHHHHHHHH-----hhccCCcc-
Q 023332 181 YDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVE-----RKTESREELLVRIATAREE-----IKHVKNFD- 249 (284)
Q Consensus 181 ~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~-----R~~~~~~~i~~rl~~~~~e-----~~~~~~~D- 249 (284)
..||+|+-..+.. .++...+.||++++ .+++.+|..+ +...+.+++...+...... +.....+|
T Consensus 129 ~~~V~~GRd~gt~----V~pda~lkifl~A~-~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~d 203 (233)
T 3r20_A 129 GRVVVEGRDIGTV----VLPDADVKIFLTAS-AEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADD 203 (233)
T ss_dssp SCEEEEESSCCCC----CCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTT
T ss_pred CcEEEecccceeE----EcCCCCEEEEEECC-HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccC
Confidence 6789987532110 11234588999997 6888777654 3344666666665543331 12223454
Q ss_pred -EEEECCCCCHHHHHHHHHHHHHHH
Q 023332 250 -YVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 250 -~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
++|.++..+++++++.|.++++..
T Consensus 204 al~IDTs~l~iee~v~~I~~~i~~~ 228 (233)
T 3r20_A 204 ALVVDTSDMDQAQVIAHLLDLVTAQ 228 (233)
T ss_dssp SEEEECTTSCHHHHHHHHHHHC---
T ss_pred cEEEECCCCCHHHHHHHHHHHHHHh
Confidence 666666669999999999988754
No 113
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.06 E-value=1.1e-10 Score=111.04 Aligned_cols=162 Identities=10% Similarity=0.027 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccc-hhhhhhhcccccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNE-LLEYALVYGDYKG 167 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~yg 167 (284)
.|.+|+|+|++||||||+++.|++.++. .|..+.+++.+.+........ |... .... .+.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~-----------------~G~~~~~ld~D~ir~~l~~~~~f~~~-er~~-~l~ 431 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQA-----------------RGRKVTLLDGDVVRTHLSRGLGFSKE-DRIT-NIL 431 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------TTCCEEEECHHHHHHHTCTTCCSSHH-HHHH-HHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhh-----------------cCCeEEEECchHhhhhhcccccccHH-HHHH-HHH
Confidence 4789999999999999999999887541 112233333333332221110 1000 0000 001
Q ss_pred CCHHHHHHHHHcCCcEEEEecH--HH-HHHHHHHhC-CCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHH---H
Q 023332 168 IPKKQIREYMAKGYDIILRVDI--QG-AQTLRRVLG-DSAVFVFLMAESETALVERLVERKTESREELLVRIATAR---E 240 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~--~~-~~~l~~~~g-~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~---~ 240 (284)
.....+..+++.|..||+|... .. ...+...+. .++.+||+++| .+++.+|+. |+.... .....+.... .
T Consensus 432 ~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~-~e~~~~Rl~-r~~~~~-~~~~~i~~~~~vr~ 508 (546)
T 2gks_A 432 RVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAP-VEVCEERDV-KGLYKK-AKEGLIKGFTGVDD 508 (546)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECC-GGGHHHHCC-SSHHHH-C------CCBTTTB
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCC-HHHHHHHhh-cccccc-ccHHHHHHHHhhhh
Confidence 1112445677889999999643 21 122222221 13488999997 599999986 321000 0001111110 0
Q ss_pred HhhccCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 241 EIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 241 e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.++....+|++|.++++++++++++|.+.+..
T Consensus 509 ~~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 509 PYEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp CCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 01111346877766657999999999999876
No 114
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.05 E-value=7.2e-10 Score=95.36 Aligned_cols=121 Identities=14% Similarity=0.262 Sum_probs=68.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCC-ceeEeeeccccCCCCC--CCCceeEecCHHHHHHhhcccchhhhhhhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGE--ENGKDYYFVSKEEFLTMIDKNELLEYALVYG 163 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~-~~~~~~~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (284)
...|.+|+|+|+|||||||+++.|++.++. ..++..+..|...... .. ..+. .....+. +. ..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~-~~~g-~~~~~~~---------~~--~~~ 95 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQ-QEYG-KDSVEYT---------KD--FAG 95 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHH-TTCS-STTHHHH---------HH--HHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHH-HHcC-chHHHHh---------hH--HHH
Confidence 456899999999999999999999988752 3333333333211100 00 0000 0000010 00 000
Q ss_pred cccCCCHHHHHHHHHcCCcEEEEecHH------HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 164 DYKGIPKKQIREYMAKGYDIILRVDIQ------GAQTLRRVLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 164 ~~yg~~~~~i~~~l~~g~~vvld~~~~------~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
.. ....++.+++.|..+|+|+.+. .+..+....|..+.++++.+| .+++.+|+..|.
T Consensus 96 ~~---~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~-~e~~~~R~~~R~ 158 (253)
T 2p5t_B 96 KM---VESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK-PELSYLSTLIRY 158 (253)
T ss_dssp HH---HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC-HHHHHHHHHHHH
Confidence 00 0224455677888999998763 122333445666677788886 699999988773
No 115
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.04 E-value=1.6e-09 Score=90.64 Aligned_cols=91 Identities=18% Similarity=0.182 Sum_probs=56.0
Q ss_pred HHcCCcEEEEecHHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHH----hhcc-CCHHHHHHHHHHHH-HHh-----hcc
Q 023332 177 MAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLV----ERKT-ESREELLVRIATAR-EEI-----KHV 245 (284)
Q Consensus 177 l~~g~~vvld~~~~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~----~R~~-~~~~~i~~rl~~~~-~e~-----~~~ 245 (284)
+..|..+|+++..... ..+...+.+||+++| .+++.+|+. .|+. .+.+++.+++.... .+. ...
T Consensus 115 ~~~~~~~vi~g~~~~~----~~~~~~~~vi~l~a~-~e~~~~R~~~~~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~ 189 (219)
T 2h92_A 115 LAAEKGIVMDGRDIGT----VVLPDADLKVYMIAS-VEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLR 189 (219)
T ss_dssp HHTTCCEEEEESSCCC----CCCTTCSEEEEEECC-HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSC
T ss_pred hccCCcEEEEcCCccc----eecCCCCEEEEEECC-HHHHHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhhhhccccc
Confidence 4466788999742110 011123578999997 689989864 3443 25677777776442 111 112
Q ss_pred CCcc-EEEECCCCCHHHHHHHHHHHHHH
Q 023332 246 KNFD-YVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 246 ~~~D-~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
..+| ++|.|+..++++++++|.++++.
T Consensus 190 ~~~d~~~Id~~~~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 190 KADDAVTLDTTGKSIEEVTDEILAMVSQ 217 (219)
T ss_dssp CCTTCEEEECTTCCHHHHHHHHHHHHHT
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHHHhc
Confidence 3356 66555535999999999998863
No 116
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.03 E-value=1.7e-10 Score=99.84 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccC----CHHHHHHHHHHHHHHhhc----------cCCccEEEECCCCCHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTE----SREELLVRIATAREEIKH----------VKNFDYVVVNAEGKLDVAVKLV 266 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~----~~~~i~~rl~~~~~e~~~----------~~~~D~vivn~~~~~e~~~~~i 266 (284)
.++.+||+++| .+++.+|+.+|++. ...++.+++...+..+.. .....++++|++++++++.++|
T Consensus 174 ~pd~vi~L~~~-~e~~~~Ri~~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~Id~~~~~eev~~~I 252 (263)
T 1p5z_B 174 ELDGIIYLQAT-PETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESL 252 (263)
T ss_dssp CCSEEEEEECC-HHHHHHHHHHHCCGGGTTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEEECCSCHHHHHHHH
T ss_pred CCCeEEEEECC-HHHHHHHHHhcCCccccCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEEECCCCHHHHHHHH
Confidence 46789999997 69999999888632 123444555544443210 0113377788888999999999
Q ss_pred HHHHHHHH
Q 023332 267 ESIIDAEK 274 (284)
Q Consensus 267 ~~~i~~~~ 274 (284)
.+.|....
T Consensus 253 ~~~l~~~l 260 (263)
T 1p5z_B 253 VEKVKEFL 260 (263)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997653
No 117
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.03 E-value=9.2e-10 Score=105.74 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=85.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc---CCceeEe-eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR---DSLRFVV-TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~---~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+|++|+|+|++||||||+++.|++.+ +...+.. .+..|.... .+. .+ +...-...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~---~~~--~f-s~~dree~--------------- 109 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---KNL--GF-SPEDREEN--------------- 109 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTT---TTC--CS-SHHHHHHH---------------
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccC---ccc--cC-ChhhhHHH---------------
Confidence 58999999999999999999998876 3111111 122222110 000 01 10000000
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc----cCCHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK----TESREELLVR 234 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~----~~~~~~i~~r 234 (284)
+....+.++..++.|..|+.+... +.+..+....+.++.+||+++| .+++.+|+.++. +... +. .
T Consensus 110 -~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap-~Evl~~Rl~r~ly~~aR~~~--~~-~ 184 (630)
T 1x6v_B 110 -VRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAP-LHVCEQRDVKGLYKKARAGE--IK-G 184 (630)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECC-HHHHHHHCTTSHHHHHTTC-------
T ss_pred -HHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECC-HHHHHHHhccccchhhhhhh--HH-H
Confidence 000112334456788888877321 2233333333556889999997 699999986321 1110 00 0
Q ss_pred HHHHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 235 IATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 235 l~~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
+......++.....|++|.+++.++++++++|.+.+...
T Consensus 185 ~~~~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 185 FTGIDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp CBTTTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred HHHhhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 000000011113467776555469999999999999764
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.99 E-value=1.1e-09 Score=91.24 Aligned_cols=69 Identities=16% Similarity=-0.027 Sum_probs=44.2
Q ss_pred CcEEEEecHHHH-----HHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc---cCCHHHHHHHHHH-HHH----HhhccCC
Q 023332 181 YDIILRVDIQGA-----QTLRRVLGDSAVFVFLMAESETALVERLVERK---TESREELLVRIAT-ARE----EIKHVKN 247 (284)
Q Consensus 181 ~~vvld~~~~~~-----~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~---~~~~~~i~~rl~~-~~~----e~~~~~~ 247 (284)
..+|+|+.+..+ ..+.. ..+..||+++| .+++.+|+.+|. ..+.+++.+++.. +.. ..+....
T Consensus 125 ~~~i~eg~~~l~de~~~~~l~~---~~d~~i~vd~~-~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~ 200 (208)
T 3c8u_A 125 RVAIIEGNYLLFDAPGWRDLTA---IWDVSIRLEVP-MADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLP 200 (208)
T ss_dssp CEEEEEESSTTBCSTTGGGGGG---TCSEEEEECCC-HHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCC
T ss_pred cEEEECCceeccCCchhHHHHH---hcCEEEEEeCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCC
Confidence 567888765322 12222 33678999997 588888888884 4577777777764 333 2334567
Q ss_pred ccEEEE
Q 023332 248 FDYVVV 253 (284)
Q Consensus 248 ~D~viv 253 (284)
+|+||.
T Consensus 201 aD~vi~ 206 (208)
T 3c8u_A 201 ADLTWP 206 (208)
T ss_dssp CSEEEC
T ss_pred CCEEee
Confidence 898874
No 119
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.98 E-value=4.7e-10 Score=95.67 Aligned_cols=73 Identities=18% Similarity=0.256 Sum_probs=49.1
Q ss_pred CCeEEEEEecCCHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhhc----------cCCccEEEECCCCCHHHHHHHH
Q 023332 201 DSAVFVFLMAESETALVERLVERKTESR----EELLVRIATAREEIKH----------VKNFDYVVVNAEGKLDVAVKLV 266 (284)
Q Consensus 201 ~~~~~I~l~~p~~~~l~~Rl~~R~~~~~----~~i~~rl~~~~~e~~~----------~~~~D~vivn~~~~~e~~~~~i 266 (284)
.++.+||+++| .+++.+|+.+|++..+ .+..+++...+..+.. .....++++|++++++++.+.+
T Consensus 149 ~pd~~i~l~~~-~~~~~~R~~~R~r~~e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~~~~~~~~Id~~~~~~~v~~~i 227 (241)
T 2ocp_A 149 TLHGFIYLQAS-PQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQ 227 (241)
T ss_dssp CCCEEEEEECC-HHHHHHHHHHSCCTTTTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTGGGCCEEEEECCSCTTTCHHHH
T ss_pred CCCEEEEEECC-HHHHHHHHHhcCCcccccCCHHHHHHHHHHHHHHHhhccccccccccCCCCEEEEECCCChhhCHHHH
Confidence 57789999997 6999999988864321 3455666665554321 1234678888888887766666
Q ss_pred HHHHHHHH
Q 023332 267 ESIIDAEK 274 (284)
Q Consensus 267 ~~~i~~~~ 274 (284)
..+++...
T Consensus 228 ~~i~~~i~ 235 (241)
T 2ocp_A 228 EDLMREVN 235 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666543
No 120
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.98 E-value=4.4e-10 Score=99.61 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+|.+|+|+|+||||||||+++|++.++
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36689999999999999999999988653
No 121
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.92 E-value=3.2e-08 Score=79.87 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhccc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGD 164 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (284)
+.+++|++++|+||||||||||++.+..- ......+ .+...+.+.... ..+.+.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~---~~~~~~d---------------------~~~g~~~~~~~~--~~~~~~ 57 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHFKP---TEVISSD---------------------FCRGLMSDDEND--QTVTGA 57 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHSCG---GGEEEHH---------------------HHHHHHCSSTTC--GGGHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHccC---CeEEccH---------------------HHHHHhcCcccc--hhhHHH
Confidence 34677999999999999999999975421 1111111 111111000000 000000
Q ss_pred ccCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhcc--CCHHHHHHHHH
Q 023332 165 YKGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKT--ESREELLVRIA 236 (284)
Q Consensus 165 ~yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~--~~~~~i~~rl~ 236 (284)
.+..........+..|..+++|..+ .....++..+...+.+++++.| ...+..+.+.|.. -.++.+.....
T Consensus 58 ~~~~~~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP-t~~Ld~~~~~R~~~~~~~~vi~~~~~ 136 (171)
T 4gp7_A 58 AFDVLHYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP-EKVCQERNKNRTDRQVEEYVIRKHTQ 136 (171)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHHTCSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC-HHHHHHHHhcccCCCCCHHHHHHHHH
Confidence 0111112334556778888888654 2233455666678899999998 6899999887753 23444433333
Q ss_pred HHHHHhhc--cCCccEEEECCCCCHHHH
Q 023332 237 TAREEIKH--VKNFDYVVVNAEGKLDVA 262 (284)
Q Consensus 237 ~~~~e~~~--~~~~D~vivn~~~~~e~~ 262 (284)
.....+.. ......+++..+ ++++
T Consensus 137 ~l~~~l~~l~~~g~tvi~vtH~--~~~~ 162 (171)
T 4gp7_A 137 QMKKSIKGLQREGFRYVYILNS--PEEV 162 (171)
T ss_dssp HHHHHSTTHHHHTCSEEEEECS--HHHH
T ss_pred HhhhhhhhHHhcCCcEEEEeCC--HHHh
Confidence 22222211 124567777665 6554
No 122
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.91 E-value=3.5e-09 Score=93.90 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=26.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+|.+++|+||||||||||++.|++.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 57799999999999999999999988763
No 123
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.86 E-value=3.6e-09 Score=100.65 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=70.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhc-ccchhhhhhhcccc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID-KNELLEYALVYGDY 165 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 165 (284)
..+|++++|+|+||||||||+++|++.+. +.. |..+.+++.+.+..... ...|..... ..+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~------------~~~----G~~i~~lDgD~~~~~l~~~l~f~~~~r-~~~- 427 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM------------EMG----GRCVTLLDGDIVRRHLSSELGFSKAHR-DVN- 427 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH------------TTC----SSCEEEESSHHHHHHTTSSCCCSHHHH-HHH-
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc------------ccC----CceEEEECCcHHHHhhccccCCCHHHH-HHH-
Confidence 35699999999999999999999998764 111 01111111111111000 000000000 000
Q ss_pred cCCCHHHHHHHHHcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCC---HHHHHHHHH
Q 023332 166 KGIPKKQIREYMAKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES---REELLVRIA 236 (284)
Q Consensus 166 yg~~~~~i~~~l~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~---~~~i~~rl~ 236 (284)
+.......+.....+..++..... ....++.+..| ....||+++| .+++.+|++ |+... ...+...+.
T Consensus 428 ~r~i~~v~q~l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~-~e~~~~R~~-r~l~~~~~~~~i~~l~~ 504 (552)
T 3cr8_A 428 VRRIGFVASEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATP-IETCESRDR-KGLYAKARAGLIPEFTG 504 (552)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-----------------------------
T ss_pred HHHHHHHHHHHHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCC-HHHHHHhcc-ccccccccHhHHHHHHh
Confidence 000000122334455555544321 23334444444 4688999997 699999975 22111 111211111
Q ss_pred HHHHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHH
Q 023332 237 TAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAE 273 (284)
Q Consensus 237 ~~~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~ 273 (284)
.+..++....+|++|..+..++++++++|.+.+...
T Consensus 505 -~r~~~e~P~~adl~Idt~~~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 505 -VSDPYEVPETPELAIDTTGLAIDEAVQQILLKLEHE 540 (552)
T ss_dssp ---CCCCCCSSCSEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred -ccccccCCCCCCEEEECCCCCHHHHHHHHHHHHHhc
Confidence 111111123467776544468999999999998754
No 124
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.85 E-value=6.7e-10 Score=106.26 Aligned_cols=161 Identities=14% Similarity=0.084 Sum_probs=81.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCC---c--eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDS---L--RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~---~--~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (284)
..|.+|+|+|++||||||+++.|++.+.. . .....+..|....+ +..|. ..+-. ++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~-----~~~f~-~~er~---------~~---- 454 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS-----ELGFT-REDRH---------TN---- 454 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT-----TCCCS-HHHHH---------HH----
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc-----ccCCC-hhHHH---------HH----
Confidence 45789999999999999999999887641 1 11111111110000 00010 00000 00
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEEecH--H----HHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHH
Q 023332 163 GDYKGIPKKQIREYMAKGYDIILRVDI--Q----GAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIA 236 (284)
Q Consensus 163 ~~~yg~~~~~i~~~l~~g~~vvld~~~--~----~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~ 236 (284)
+....+.++..++.|..||++... . .+..+....| .+.+||+++| .+++.+|..+... .......+.
T Consensus 455 ---i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~-~ev~~~R~~r~l~--~~~~~~~i~ 527 (573)
T 1m8p_A 455 ---IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATP-LEHCEQSDKRGIY--AAARRGEIK 527 (573)
T ss_dssp ---HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCC-HHHHHHHCSSCHH--HHHHTTSSS
T ss_pred ---HHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCC-HHHHHHHhcccch--hhhhHHHHH
Confidence 000112345567788888888433 1 2222222222 4588999997 6999988532110 000000000
Q ss_pred HH---HHHhhccCCccEEEECCCCCHHHHHHHHHHHHHHHH
Q 023332 237 TA---REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274 (284)
Q Consensus 237 ~~---~~e~~~~~~~D~vivn~~~~~e~~~~~i~~~i~~~~ 274 (284)
.. +..++.....|++|.+++.++++++++|.+.+....
T Consensus 528 ~~~~~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~~~ 568 (573)
T 1m8p_A 528 GFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLESQG 568 (573)
T ss_dssp SCBTTTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhccccccccCCCCEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 00 000111124566654443589999999999998643
No 125
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.82 E-value=3.2e-08 Score=93.67 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=33.8
Q ss_pred HcCCcEEEEecH------HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhc
Q 023332 178 AKGYDIILRVDI------QGAQTLRRVLGDSAVFVFLMAESETALVERLVERK 224 (284)
Q Consensus 178 ~~g~~vvld~~~------~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~ 224 (284)
+.|..||+|++. ..+..+.+..|...++|++.+++.+++.+|+.+|.
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 568899999866 23333444556667788888887789999997665
No 126
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.80 E-value=1.6e-09 Score=95.46 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCc---------eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSL---------RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYAL 160 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~---------~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
+.+|+|+||+|||||||+..|++.++.. +...+.++++|+.++..|..+++++..++...+..+.|....
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a- 81 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA- 81 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-
Confidence 6789999999999999999999887632 334567788888888899999998777666665555555543
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEe
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRV 187 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~ 187 (284)
.+.++++.+.|+.+|+.|
T Consensus 82 ---------~~~i~~i~~~gk~pIlVG 99 (322)
T 3exa_A 82 ---------TPLITEIHERGRLPFLVG 99 (322)
T ss_dssp ---------HHHHHHHHHTTCEEEEES
T ss_pred ---------HHHHHHHHhCCCcEEEEc
Confidence 357778888999888875
No 127
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.75 E-value=3.7e-09 Score=96.23 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCce---------eEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLR---------FVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYAL 160 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~---------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
..+|+|+||+|||||||+..|++.++... ...+.++++++.++..|..+++++..++...+..+.|.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a- 80 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC- 80 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH-
Confidence 46899999999999999999998876322 22456788899999999999998877777666666777664
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEe
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRV 187 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~ 187 (284)
.+.++++...|+.+|+.|
T Consensus 81 ---------~~~i~~i~~~g~~pilVG 98 (409)
T 3eph_A 81 ---------MNAIEDIHRRGKIPIVVG 98 (409)
T ss_dssp ---------HHHHHHHHTTTCEEEEEC
T ss_pred ---------HHHHHHHHhcCCCEEEEC
Confidence 356778888899888874
No 128
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.74 E-value=2e-09 Score=94.63 Aligned_cols=92 Identities=16% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCc---------eeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSL---------RFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEY 158 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~---------~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (284)
..+.+|+|+||+|||||||+..|++.++.. +...+.++++|+.++..|..+++++..++...+..+.|...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 346789999999999999999999887632 22235678888888888889998876666655555555544
Q ss_pred hhhcccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 159 ALVYGDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 159 ~~~~~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
. .+.++++.+.|+.+|+.+..
T Consensus 88 a----------~~~i~~i~~~g~~pilVGGT 108 (316)
T 3foz_A 88 A----------LAEMADITAAGRIPLLVGGT 108 (316)
T ss_dssp H----------HHHHHHHHHTTCEEEEEESC
T ss_pred H----------HHHHHHHHhCCCcEEEEcCc
Confidence 3 34677888899988887543
No 129
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.72 E-value=7.9e-10 Score=97.14 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+|+|+|++||||||+++.|++.++
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999988654
No 130
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.60 E-value=2.1e-07 Score=82.65 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.+|+|+|||||||||+++.|.+.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999988764
No 131
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.59 E-value=2e-07 Score=77.03 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=55.3
Q ss_pred cEEEEecH--HHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhhccCCccEEEECCCCCH
Q 023332 182 DIILRVDI--QGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKL 259 (284)
Q Consensus 182 ~vvld~~~--~~~~~l~~~~g~~~~~I~l~~p~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~e~~~~~~~D~vivn~~~~~ 259 (284)
.+|+++-. ..+..+++.+|..+.+|.+.++ ++++.+|...+....++.. . ...+.....+|++|+|+ +++
T Consensus 105 ~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as-~~~R~~Rg~~~~~~~Dd~e---s---E~gL~~~~~~D~vI~Nd-gt~ 176 (202)
T 3ch4_B 105 IWLVSDTRRVSDIQWFREAYGAVTQTVRVVAL-EQSRQQRGWVFTPGVDDAE---S---ECGLDNFGDFDWVIENH-GVE 176 (202)
T ss_dssp EEEECCCCSHHHHHHHHHHHGGGEEEEEEEEC-HHHHHHTTCCCCTTTTTSH---H---HHTTTTCCCCSEEEEEC-SCH
T ss_pred cEEEeCCCCHHHHHHHHHhCCCcEEEEEEECC-HHHHHHHhhhccccccccc---c---ccCCCCCCcCCEEEEeC-CCH
Confidence 45665433 3455566666655788999997 6888888543332221100 0 01111113689999988 799
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023332 260 DVAVKLVESIIDAEKAKV 277 (284)
Q Consensus 260 e~~~~~i~~~i~~~~~~~ 277 (284)
+++.+++..++...+.+.
T Consensus 177 eel~~~v~~ll~~~~~~~ 194 (202)
T 3ch4_B 177 QRLEEQLENLIEFIRSRL 194 (202)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999988775543
No 132
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.57 E-value=2.3e-07 Score=82.82 Aligned_cols=89 Identities=19% Similarity=0.231 Sum_probs=52.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCCceeE---------eeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhh
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDSLRFV---------VTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALV 161 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~---------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (284)
.+|+|+||+|||||||++.|++.++...+. .+.+++++...+..+..+++++.......+....|....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a-- 85 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA-- 85 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHH--
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHH--
Confidence 689999999999999999999987632222 223345555556666666654432222122222222221
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEEecH
Q 023332 162 YGDYKGIPKKQIREYMAKGYDIILRVDI 189 (284)
Q Consensus 162 ~~~~yg~~~~~i~~~l~~g~~vvld~~~ 189 (284)
...+.++...|..+|+.+..
T Consensus 86 --------~~~i~~i~~~g~~~IlvGGt 105 (340)
T 3d3q_A 86 --------EKYIKDITRRGKVPIIAGGT 105 (340)
T ss_dssp --------HHHHHHHHHTTCEEEEECCC
T ss_pred --------HHHHHHHHhCCCcEEEECCh
Confidence 23455666778877776544
No 133
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.54 E-value=2.9e-08 Score=88.10 Aligned_cols=89 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccCCceeEe---------eeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVV---------TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYAL 160 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (284)
+.+|+|+||+|||||||++.|++.++...+.. +.+++++...+..|..+++++..++........|.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a- 83 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA- 83 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH-
Confidence 46899999999999999999999876333332 22344444444445555554433222222222222221
Q ss_pred hcccccCCCHHHHHHHHHcCCcEEEEec
Q 023332 161 VYGDYKGIPKKQIREYMAKGYDIILRVD 188 (284)
Q Consensus 161 ~~~~~yg~~~~~i~~~l~~g~~vvld~~ 188 (284)
.+.++++...|+.+|+.+.
T Consensus 84 ---------~~~i~~i~~~g~~~IlvGG 102 (323)
T 3crm_A 84 ---------LAAMAKATARGRIPLLVGG 102 (323)
T ss_dssp ---------HHHHHHHHHTTCEEEEEES
T ss_pred ---------HHHHHHHHHcCCeEEEECC
Confidence 2355667777887777653
No 134
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.53 E-value=9.6e-09 Score=89.07 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=36.6
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..+....|+....+.++++. +.+|++++|+||||||||||+++|++.++
T Consensus 12 l~~~~l~~~~~~~~vL~~vsl~------i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 12 LEASHLHYHVQQQALINDVSLH------IASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE------EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEeEEEEeCCeeEEEeeEEE------EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4444444444443334444444 67799999999999999999999999864
No 135
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.51 E-value=8.6e-09 Score=89.16 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=35.9
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..+....|+....+.++++ .+.+|++++|+||||||||||+++|++.++
T Consensus 7 l~i~~l~~~y~~~~vl~~vsl------~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 7 LHVIDLHKRYGGHEVLKGVSL------QARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEEEEEEETTEEEEEEEEE------EECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEECCEEEEEeeEE------EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 444444444433223334444 467799999999999999999999999864
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.51 E-value=8.1e-08 Score=76.66 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=37.8
Q ss_pred hhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 61 AVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+..+.++...+..++++. +.+|.+++|+||||||||||++.|++.++
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~------i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLH------TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHC------CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhccccc------cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 34455666665555556665 56799999999999999999999998765
No 137
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.50 E-value=9.4e-09 Score=89.74 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=40.5
Q ss_pred CCCccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 54 MNHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
+....++..+....|+....+.++++ .+.+|++++|+||||||||||+++|++.++ ..+.+.
T Consensus 17 ~~~~~l~~~~l~~~y~~~~vL~~isl------~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~ 79 (279)
T 2ihy_A 17 GSHMLIQLDQIGRMKQGKTILKKISW------QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79 (279)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEEE------EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred CCCceEEEEeEEEEECCEEEEEeeeE------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEE
Confidence 33334555555544443323334444 467799999999999999999999999864 344443
No 138
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.50 E-value=1.2e-08 Score=92.00 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.+.
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 333467899999999999999999999999864
No 139
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.48 E-value=1.3e-08 Score=86.91 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
+.+.+|++++|+||||||||||++.|++.+. ..+.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 63 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 3467799999999999999999999999864 33443
No 140
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.46 E-value=5.7e-08 Score=82.61 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=28.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334467899999999999999999999999864
No 141
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.45 E-value=5.2e-08 Score=86.05 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=29.6
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+++|++++|+||||||||||+++|++.++
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3444578899999999999999999999999875
No 142
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.44 E-value=1.4e-08 Score=88.33 Aligned_cols=33 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 333467799999999999999999999999864
No 143
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.43 E-value=4.9e-08 Score=88.56 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=38.1
Q ss_pred hhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 61 AVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
..+..+.|+...++.++++. +.+|++++|+||||||||||+++|++.+. ..+.+.
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~------i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 61 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLD------IHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEE------ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEeEEEEECCEEEEeeeEEE------ECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence 33334444443344445544 67799999999999999999999999864 344443
No 144
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.42 E-value=2.3e-08 Score=90.01 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=38.6
Q ss_pred hhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 60 AAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
+..+..+.|+...++.++++. +.+|++++|+||||||||||+++|++... ..+.+.
T Consensus 6 ~i~~ls~~y~~~~~L~~vsl~------i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~ 62 (359)
T 3fvq_A 6 HIGHLSKSFQNTPVLNDISLS------LDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62 (359)
T ss_dssp EEEEEEEEETTEEEEEEEEEE------ECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEeEEEEECCEEEEEeeEEE------EcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence 344444444443344445554 67799999999999999999999999864 344443
No 145
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.41 E-value=2.1e-08 Score=86.50 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++.++
T Consensus 25 ~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3344467899999999999999999999999864
No 146
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.39 E-value=1.6e-07 Score=85.07 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=38.7
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
++..+..+.|+....+.++++. +.+|++++|+||||||||||+++|++.+. ..+.+.
T Consensus 12 l~~~~l~~~y~~~~vl~~vsl~------i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 69 (372)
T 1v43_A 12 VKLENLTKRFGNFTAVNKLNLT------IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE------ECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEEEEEECCEEEEeeeEEE------ECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEE
Confidence 3444444444433333344444 67799999999999999999999999864 444443
No 147
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.38 E-value=3.1e-08 Score=85.87 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=35.9
Q ss_pred CCCccchhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 54 MNHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+..+.++..+....|+....+.++++ .+.+|++++|+||||||||||+++|++.
T Consensus 16 ~~~~~l~~~~l~~~y~~~~vl~~vsl------~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 16 RGSHMLSIKDLHVSVEDKAILRGLSL------DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEE------EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCceEEEEeEEEEECCEEEEEeeEE------EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33334555555444443223334444 4677999999999999999999999997
No 148
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.36 E-value=1.3e-07 Score=79.77 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=28.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||++.|++.++
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 333467799999999999999999999998864
No 149
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.34 E-value=1.9e-07 Score=89.66 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=30.9
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++++.+++|++++|+||||||||||++.|++.++
T Consensus 359 l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344555678899999999999999999999999875
No 150
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.33 E-value=5e-08 Score=87.78 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=38.4
Q ss_pred chhhhhHHHH-hhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 59 TAAVKKAELL-RSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 59 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
++..+..+.| +....+.++++. +.+|++++|+||||||||||+++|++.+. ..+.+.
T Consensus 15 l~~~~l~~~y~g~~~vl~~vsl~------i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 73 (355)
T 1z47_A 15 IEFVGVEKIYPGGARSVRGVSFQ------IREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73 (355)
T ss_dssp EEEEEEEECCTTSTTCEEEEEEE------EETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEEEEEEEEcCCCEEEeeeEEE------ECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence 3444444444 333333344444 67799999999999999999999999864 344443
No 151
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.33 E-value=1.3e-07 Score=81.02 Aligned_cols=33 Identities=27% Similarity=0.196 Sum_probs=28.7
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334467899999999999999999999999864
No 152
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.33 E-value=4.3e-06 Score=78.08 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.+|+++|.+||||||+++.|++.+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998765
No 153
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.32 E-value=2.2e-07 Score=79.32 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+.+|++++|+||||||||||+++|++.++
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 21 ISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 334467899999999999999999999999864
No 154
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.32 E-value=1.9e-07 Score=81.02 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=28.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+||||||||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34467899999999999999999999999864
No 155
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.31 E-value=4.5e-08 Score=84.31 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=30.1
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
++.+.+|++++|+||||||||||+++|++.++ ..+.+
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I 72 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 33467799999999999999999999999864 33444
No 156
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.30 E-value=6.3e-08 Score=87.33 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
+.+.+|++++|+||||||||||+++|++.+. ..+.+.
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 61 (359)
T 2yyz_A 24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61 (359)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEE
Confidence 3467799999999999999999999999864 344443
No 157
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.30 E-value=1.8e-07 Score=80.88 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=38.1
Q ss_pred chhhhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 59 TAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
++..+....|+....+.++++ .+.+|++++|+||||||||||+++|++.++ ..+.+
T Consensus 25 l~i~~l~~~y~~~~vL~~vsl------~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I 81 (263)
T 2olj_A 25 IDVHQLKKSFGSLEVLKGINV------HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81 (263)
T ss_dssp EEEEEEEEEETTEEEEEEEEE------EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEeEEEEECCEEEEEeeEE------EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence 444444444433223334444 467799999999999999999999999864 33444
No 158
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.29 E-value=1.7e-07 Score=97.75 Aligned_cols=87 Identities=18% Similarity=0.220 Sum_probs=64.4
Q ss_pred cCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hcccc
Q 023332 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKNE 154 (284)
Q Consensus 80 ~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~ 154 (284)
..++++.+++|+.++|+|+||||||||++.|.+.++ +..|.+ +|.++..++.+.+... +.|+.
T Consensus 1095 L~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD------------TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC------------CSSSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred ccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc------------CCCCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence 344455678899999999999999999999999886 555644 7777777777777654 45777
Q ss_pred hhhhhhhcccc-cCC-----CHHHHHHHHH
Q 023332 155 LLEYALVYGDY-KGI-----PKKQIREYMA 178 (284)
Q Consensus 155 ~~~~~~~~~~~-yg~-----~~~~i~~~l~ 178 (284)
+++..++++|+ ||. ..+++.++++
T Consensus 1163 ~LF~gTIreNI~~gld~~~~sd~ei~~Al~ 1192 (1321)
T 4f4c_A 1163 TLFDCSIAENIIYGLDPSSVTMAQVEEAAR 1192 (1321)
T ss_dssp CCCSEEHHHHHSSSSCTTTSCHHHHHHHHH
T ss_pred EeeCccHHHHHhccCCCCCCCHHHHHHHHH
Confidence 77777877773 552 4556666554
No 159
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.28 E-value=7.1e-08 Score=87.07 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
++.+.+|++++|+||||||||||+++|++.+. ..+.+.
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 61 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEE
Confidence 33467799999999999999999999999864 344443
No 160
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.26 E-value=8.6e-08 Score=86.89 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
+.+.+|++++|+||||||||||+++|++.+. ..+.+
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 60 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence 3467799999999999999999999999864 33443
No 161
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.26 E-value=3.1e-07 Score=78.23 Aligned_cols=66 Identities=12% Similarity=0.123 Sum_probs=43.9
Q ss_pred eEEEEEecCCHHHHHHHHHhhcc----CCHHHHHHHHHHHHHHh-hccCCccEEEECCCCCHHHHHHHHHHHHH
Q 023332 203 AVFVFLMAESETALVERLVERKT----ESREELLVRIATAREEI-KHVKNFDYVVVNAEGKLDVAVKLVESIID 271 (284)
Q Consensus 203 ~~~I~l~~p~~~~l~~Rl~~R~~----~~~~~i~~rl~~~~~e~-~~~~~~D~vivn~~~~~e~~~~~i~~~i~ 271 (284)
+.+|+++++. ++-.+|+.+|+. -..+.. .++..+..+. .+...+|+||.|+ ++++++.+++.++++
T Consensus 169 d~VvVvdv~~-~~qieRl~~rg~~~v~i~~~~~-~~i~~Q~se~~~k~~~AD~VI~N~-gsle~l~~qV~~ll~ 239 (241)
T 1dek_A 169 DYYIVPDTRQ-DHEMDAARAMGATVIHVVRPGQ-KSNDTHITEAGLPIRDGDLVITND-GSLEELFSKIKNTLK 239 (241)
T ss_dssp SEEEECCCCS-HHHHHHHHHTTCEEEEEECTTC-CCSCCSGGGSCCCCCTTCEEEECC-SCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCc-HHHHHHHHHCCCceEEEECccc-chhhcCCCcccccccCCCEEEECC-CCHHHHHHHHHHHHh
Confidence 5678888885 777899998853 111100 1223222232 2446789999887 899999999998875
No 162
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.26 E-value=7.5e-08 Score=86.69 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=29.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
.+.+|++++|+||||||||||+++|++.+. ..+.+
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 62 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence 367799999999999999999999999864 33443
No 163
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.25 E-value=2.6e-07 Score=79.25 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=27.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||++.|++.++
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 367799999999999999999999999864
No 164
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.23 E-value=3.2e-07 Score=79.42 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+||||||||||+++|++.++
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34467899999999999999999999999864
No 165
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.22 E-value=2.6e-07 Score=78.21 Aligned_cols=32 Identities=16% Similarity=0.328 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+++|++++|+||||||||||++.|++.++
T Consensus 28 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 28 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 33467899999999999999999999998864
No 166
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.22 E-value=2.3e-07 Score=77.76 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=27.1
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||+++|++.++
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467799999999999999999999998864
No 167
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.18 E-value=4.5e-07 Score=77.11 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=28.2
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+.+|++++|+||||||||||++.|++.++
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34467899999999999999999999998864
No 168
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.18 E-value=7.3e-07 Score=76.87 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeE
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 120 (284)
+++.+.+|++++|+||||||||||+++|++.++..+.+
T Consensus 39 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I 76 (260)
T 2ghi_A 39 INFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAEGDI 76 (260)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCEEEE
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCeEE
Confidence 34456789999999999999999999999886533333
No 169
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.18 E-value=3.2e-05 Score=67.63 Aligned_cols=151 Identities=10% Similarity=0.125 Sum_probs=82.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccCC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGI 168 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~ 168 (284)
.+.+|+|-|.-||||+|.++.|.+.+...+.- ...+++|...+.. + .++ + .
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~-V~~~~~Pt~eE~~-----------------~-~yl-~-R-------- 135 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSAR-VVALTKPTETERG-----------------Q-WYF-Q-R-------- 135 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEE-EEECCSCCHHHHT-----------------S-CTT-H-H--------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCe-EEEeCCcChHHHh-----------------c-hHH-H-H--------
Confidence 48999999999999999999999887532221 2223333211110 0 000 0 0
Q ss_pred CHHHHHHHHHcCCcEEEEecH-------------------HHHHHHH------HHhCCCeEEEEEecCCHHHHHHHHHhh
Q 023332 169 PKKQIREYMAKGYDIILRVDI-------------------QGAQTLR------RVLGDSAVFVFLMAESETALVERLVER 223 (284)
Q Consensus 169 ~~~~i~~~l~~g~~vvld~~~-------------------~~~~~l~------~~~g~~~~~I~l~~p~~~~l~~Rl~~R 223 (284)
....+-..|..||+|-.+ ..+.++. ...|..++.+|++.+ .++..+|+..|
T Consensus 136 ---~~~~LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is-~eeq~kR~~~R 211 (304)
T 3czq_A 136 ---YVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIG-REMQLKRFHDR 211 (304)
T ss_dssp ---HHTTCCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECC-HHHHHHHHHHH
T ss_pred ---HHHhcccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECC-HHHHHHHHHHh
Confidence 011112567777777443 1122222 224677888999997 68999999877
Q ss_pred cc-------CCHHHHH-----HHHHHHHHHhhc---cCCccEEEECCCCCHHHHHHHHHHHHHH
Q 023332 224 KT-------ESREELL-----VRIATAREEIKH---VKNFDYVVVNAEGKLDVAVKLVESIIDA 272 (284)
Q Consensus 224 ~~-------~~~~~i~-----~rl~~~~~e~~~---~~~~D~vivn~~~~~e~~~~~i~~~i~~ 272 (284)
.. .+..++. .++..+..++.. ...+.++||+++...-.-++-+..+++.
T Consensus 212 ~~dp~k~Wk~s~~D~~~~~~~~~y~~a~~~ml~~T~t~~apW~vIda~dk~~arl~v~~~Il~~ 275 (304)
T 3czq_A 212 RHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTK 275 (304)
T ss_dssp HHCTTTGGGCCHHHHHGGGGHHHHHHHHHHHHHHHCCSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred hcCcccccCCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEEECCCcchHHHHHHHHHHHH
Confidence 53 2333332 222333333322 1455788898865443333334444443
No 170
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.17 E-value=3.5e-07 Score=82.10 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeE
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFV 120 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~ 120 (284)
++.+.+|++++|+||||||||||+++|++.+. ..+.+
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I 57 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Confidence 33467899999999999999999999999864 33444
No 171
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.16 E-value=5.7e-07 Score=76.63 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=29.7
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
++.+.+ ++++|+||||||||||+++|++.+. ..+.+.
T Consensus 19 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 56 (240)
T 2onk_A 19 DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56 (240)
T ss_dssp EEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred EEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 334677 9999999999999999999999864 444443
No 172
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.16 E-value=4e-07 Score=78.23 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+.+|++++|+||||||||||++.|++.++
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467799999999999999999999999864
No 173
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.16 E-value=5.7e-07 Score=86.53 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=29.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++.+++|++++|+||||||||||++.|++.++
T Consensus 362 ~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 362 DFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3444578899999999999999999999999875
No 174
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.16 E-value=7.2e-07 Score=85.57 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++.+++|++++|+||||||||||++.|++.++
T Consensus 361 ~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 361 NINLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3344577899999999999999999999999875
No 175
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.16 E-value=3e-07 Score=83.83 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=30.5
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeE
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~ 120 (284)
+++.+.+|++++|+||||||||||+++|++.++..+.+
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I 77 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEI 77 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEE
T ss_pred eeEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEE
Confidence 33446789999999999999999999999986533333
No 176
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.15 E-value=5.3e-07 Score=86.78 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=31.6
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++++.+++|++++|+||||||||||++.|.+.++
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3445555678899999999999999999999999875
No 177
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.14 E-value=3.8e-07 Score=95.14 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=60.3
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCC--CCceeEecCHHHHHHh---hcccch
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEE--NGKDYYFVSKEEFLTM---IDKNEL 155 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~ 155 (284)
.++++.+++|++++|+|++|||||||++.|.+.++ +..|.+ +|.++..++...+... +.+..+
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~------------~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD------------VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC------------CSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhccccc------------cccCcccCCCccchhccHHHHhhcccccCCcce
Confidence 34445578899999999999999999999999886 444433 5666666666666544 456777
Q ss_pred hhhhhhcccc-cCC---CHHHHHHHHH
Q 023332 156 LEYALVYGDY-KGI---PKKQIREYMA 178 (284)
Q Consensus 156 ~~~~~~~~~~-yg~---~~~~i~~~l~ 178 (284)
+++.++.+|+ ||. ..+++.++++
T Consensus 503 Lf~~TI~eNI~~g~~~~~~~~v~~a~~ 529 (1321)
T 4f4c_A 503 LFNCTIEENISLGKEGITREEMVAACK 529 (1321)
T ss_dssp CCSEEHHHHHHTTCTTCCHHHHHHHHH
T ss_pred eeCCchhHHHhhhcccchHHHHHHHHH
Confidence 7777777774 554 3445554443
No 178
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.13 E-value=7e-07 Score=85.62 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++.+++|++++|+||||||||||++.|.+.++
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3444578899999999999999999999999875
No 179
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.11 E-value=8.5e-06 Score=72.56 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+|++|+|.|+-||||||+++.|++.+.
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~ 32 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAAS 32 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4579999999999999999999998875
No 180
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.11 E-value=1.4e-06 Score=76.75 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=27.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.+++|++++|+||||||||||++.|.+.+
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 347889999999999999999999999887
No 181
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.10 E-value=9.4e-07 Score=84.86 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++.+++|++++|+||||||||||++.|.+.++
T Consensus 361 ~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 361 GVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3444578899999999999999999999999875
No 182
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.08 E-value=9.8e-07 Score=75.61 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=26.8
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.+.+|++++|+||||||||||++.|++.
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 23 NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 334677999999999999999999999996
No 183
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.07 E-value=1.1e-06 Score=76.91 Aligned_cols=34 Identities=15% Similarity=0.305 Sum_probs=29.4
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++.+.+|++++|+||||||||||+++|++.++
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3444578899999999999999999999998864
No 184
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.06 E-value=2.7e-05 Score=70.20 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeecc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTATS 125 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~~ 125 (284)
+.+|.+++|+|||||||||+++.|.+.++ ..+.+.....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~ 211 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV 211 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc
Confidence 46699999999999999999999999875 3444444433
No 185
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.04 E-value=1.9e-06 Score=74.34 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=30.8
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEe
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVV 121 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~ 121 (284)
+++.+. |++++|+||||||||||+++|++.++..+.+.
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~ 61 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYSGNIF 61 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHHHHTTSSCCEEEEE
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHHHHhCCCCCCcEEE
Confidence 344578 99999999999999999999998765445443
No 186
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.96 E-value=1.1e-05 Score=71.63 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++|+|.|+-||||||+++.|++.+.
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999998765
No 187
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.95 E-value=1.1e-05 Score=75.97 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|.+|+|+|++||||||+++.|++.+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999875
No 188
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.94 E-value=8.9e-06 Score=73.36 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++++|+|.|+-||||||+++.|++.+.
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC---
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5688999999999999999999998765
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.93 E-value=5.7e-06 Score=72.83 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++...+|.+++|+|||||||||+++.|++.+.
T Consensus 93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445567899999999999999999999998753
No 190
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.90 E-value=5e-06 Score=67.43 Aligned_cols=25 Identities=44% Similarity=0.744 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.++|+||||||||||++.|++.++
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 191
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.90 E-value=4.8e-06 Score=69.32 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+|++++|+||||||||||+++|++.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999999876
No 192
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.89 E-value=8e-06 Score=77.48 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+|++++|+||||||||||+++|++.+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56799999999999999999999998763
No 193
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.89 E-value=4.8e-06 Score=86.70 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++++.+++|++++|+|+||||||||++.|.+.++
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33444578899999999999999999999999875
No 194
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.87 E-value=1.1e-05 Score=76.63 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+|+||||||||+++|++.+.
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468899999999999999999999998763
No 195
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=6.5e-06 Score=70.93 Aligned_cols=28 Identities=25% Similarity=0.500 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+|.+++|+|||||||||+++.|.+.++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 4589999999999999999999988764
No 196
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.87 E-value=9.7e-06 Score=84.39 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.9
Q ss_pred ccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 79 ~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...++++.+++|++++|+|+||||||||++.|.+.++
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3455566688899999999999999999999999875
No 197
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.85 E-value=6.2e-06 Score=69.65 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
+++|++++|+||||||||||++.|+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 4679999999999999999999998
No 198
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.84 E-value=6.6e-06 Score=68.57 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+++|++++|+||||||||||++.|+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999874
No 199
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.83 E-value=1.3e-05 Score=71.55 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=27.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHH-HHHHhccCCc
Q 023332 87 PPNPLIIVISGPSGVGKDALI-KKLRESRDSL 117 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~-~~L~~~~~~~ 117 (284)
..+|.+|+|-|+-||||||++ +.|++.++..
T Consensus 9 ~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~ 40 (341)
T 1osn_A 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITP 40 (341)
T ss_dssp CEEEEEEEEEESSSSCTTHHHHHHHHTTTTSG
T ss_pred cCCceEEEEeCCCCCCHHHHHHHHHHHHHhhC
Confidence 456899999999999999999 9999987643
No 200
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.83 E-value=1.1e-05 Score=75.22 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.1
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+++....|.+++|+|+|||||||+++.|++.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 34556678899999999999999999999998753
No 201
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.83 E-value=1e-05 Score=72.84 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=29.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++...+|.+++|+|||||||||+++.|++.+.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3445677899999999999999999999998763
No 202
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.83 E-value=6.1e-06 Score=78.31 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||+++|++.++
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467899999999999999999999998764
No 203
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.4e-05 Score=76.89 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=27.2
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||+++|++.+.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 357899999999999999999999999864
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=7.7e-06 Score=65.92 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..|..++|+||+|+|||||++.|+..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999999999999998765
No 205
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=8.5e-06 Score=66.74 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
|++++|+|+|||||||++++|++.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc
Confidence 5689999999999999999998875
No 206
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.80 E-value=8.5e-06 Score=77.35 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=27.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||++.|++.++
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356799999999999999999999998764
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.80 E-value=1.5e-05 Score=71.22 Aligned_cols=47 Identities=17% Similarity=0.115 Sum_probs=33.3
Q ss_pred hhhHHHHhhhHHhhcccccCCCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 62 VKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+....++....+.++++. ..+|.+++|+|+||||||||++.|.+.+
T Consensus 33 ~~~~~~~~~~~~l~~i~~~------~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 33 RRADHRAAVRDLIDAVLPQ------TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SSHHHHHHHHHHHHHHGGG------CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcccccChHHHHHhCCcc------cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3334444433334445444 5679999999999999999999998764
No 208
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1e-05 Score=75.25 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..|++++|+||||||||||+++|++.+.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 45799999999999999999999998753
No 209
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.78 E-value=9.6e-06 Score=78.02 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=26.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||+++|++.+.
T Consensus 378 ~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999999999999999999998764
No 210
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.76 E-value=1.9e-05 Score=75.97 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=27.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++++|+||||||||||+++|++.+.
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 468899999999999999999999998763
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.72 E-value=1.6e-05 Score=70.09 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+|++++|+|||||||||+++.|+..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999999998753
No 212
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.71 E-value=1.5e-05 Score=71.80 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=28.4
Q ss_pred CCCCCCC--CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPN--PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~--g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++..+.+ ++.++|+|+||||||||++.|++.+.
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345677 89999999999999999999999875
No 213
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.71 E-value=1.9e-05 Score=70.29 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+|.+++|+|||||||||+++.|++.+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999988753
No 214
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.68 E-value=2.3e-05 Score=68.52 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|.+|+|+|++||||||+++.|++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999999999999988764
No 215
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.68 E-value=0.001 Score=62.22 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=81.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeeeccccCCCCCCCCceeEecCHHHHHHhhcccchhhhhhhcccccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg 167 (284)
..|.+|+|-|.-||||+|+++.|.+.+...+.- .....+|...+.. ..| + +
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~-V~a~~~Pt~~E~~-~~y-----------------l-~--------- 91 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIE-VQSFLRPSDEELE-RPP-----------------Q-W--------- 91 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEE-EEECSSCCHHHHT-SCT-----------------T-H---------
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCe-EEEeCCCChhhcc-CCh-----------------h-h---------
Confidence 448999999999999999999998887522221 1112222211111 000 0 0
Q ss_pred CCHHHHHHHHHcCCcEEEEecH---------------H----HHHHH------HHHhCCCeEEEEEecCCHHHHHHHHHh
Q 023332 168 IPKKQIREYMAKGYDIILRVDI---------------Q----GAQTL------RRVLGDSAVFVFLMAESETALVERLVE 222 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~---------------~----~~~~l------~~~~g~~~~~I~l~~p~~~~l~~Rl~~ 222 (284)
...+.+-..|..+|+|-.+ . .+.++ ...-|...+.+|++.+ .++..+|+.+
T Consensus 92 ---R~~~~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is-~eeq~kRl~~ 167 (500)
T 3czp_A 92 ---RFWRRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLS-KKQLKERLKA 167 (500)
T ss_dssp ---HHHHHCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHCC--
T ss_pred ---hHHHhCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECC-HHHHHHHHHH
Confidence 0112233466677777433 0 11111 2233677888999997 6999999998
Q ss_pred hccCCH-------------HHHHHHHHHHHHHh-h--ccCCccEEEECCCC---CHHHHHHHHHHHHHHHHh
Q 023332 223 RKTESR-------------EELLVRIATAREEI-K--HVKNFDYVVVNAEG---KLDVAVKLVESIIDAEKA 275 (284)
Q Consensus 223 R~~~~~-------------~~i~~rl~~~~~e~-~--~~~~~D~vivn~~~---~~e~~~~~i~~~i~~~~~ 275 (284)
|..+.. +.....+ .++.++ . ....+.+.||+++. ....+.+.|.+.|+....
T Consensus 168 R~~~p~k~Wk~s~~D~~~~~~~~~Y~-~a~e~~l~~T~t~~APW~vI~a~dk~~arl~v~~~il~~l~~~l~ 238 (500)
T 3czp_A 168 LEKDPQHSWKLSPLDWKQSEVYDRFV-HYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALA 238 (500)
T ss_dssp -----------CSSCTTSHHHHHHHH-HHHHHHHHHHCBTTBCEEEEECSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcccCCCCHHHHHHHHhHHHHH-HHHHHHHHhhcCCCCCEEEEECCCcchhHHHHHHHHHHHHHHHHH
Confidence 864211 2122222 223322 2 22456788888864 245566666666665543
No 216
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.65 E-value=2.1e-05 Score=73.35 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+ ++++|+||||||||||+++|++.+.
T Consensus 26 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 26 DFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp ECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4666 9999999999999999999998753
No 217
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.65 E-value=4.1e-05 Score=70.75 Aligned_cols=39 Identities=18% Similarity=0.117 Sum_probs=30.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEeeec
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVVTAT 124 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~~~~ 124 (284)
++.+|.+++|+||||||||||+++|++... ..+.+...+
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 367799999999999999999999998864 344444433
No 218
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.63 E-value=3.7e-05 Score=68.90 Aligned_cols=30 Identities=27% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++.+|.+++|+|+||||||||+++|++...
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 356799999999999999999999998764
No 219
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.61 E-value=3.2e-05 Score=67.02 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=24.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++| ++|+||||||||||++.|++.++
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence 35566 99999999999999999998765
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.60 E-value=2.2e-05 Score=72.03 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=24.7
Q ss_pred CCCCCeE--EEEEcCCCCCHHHHHHHHHhc
Q 023332 86 PPPNPLI--IVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 86 ~~~~g~i--i~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+..|.+ ++|+|+||||||||++.|.+.
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3677999 999999999999999999876
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.58 E-value=2.7e-05 Score=61.13 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.|..++|+||+|+|||||++.|++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998865
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.56 E-value=6.1e-05 Score=64.02 Aligned_cols=27 Identities=30% Similarity=0.614 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++| ++|+||||||||||++.|++...
T Consensus 48 ~~~g--~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 48 IPKG--VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence 4556 89999999999999999998764
No 223
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.55 E-value=3.2e-05 Score=68.88 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..|++++|+|+|||||||+++.|.+.++
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45689999999999999999999999875
No 224
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.53 E-value=4.5e-05 Score=69.06 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+|.+++|+|||||||||+++.|.+.++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45689999999999999999999988764
No 225
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.52 E-value=4e-05 Score=66.27 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++|+|+||||||||++.|.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998875
No 226
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.52 E-value=6.1e-05 Score=72.41 Aligned_cols=28 Identities=36% Similarity=0.555 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|++++|+||||||||||+++|++.+.
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3458899999999999999999998864
No 227
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.51 E-value=4.7e-05 Score=69.00 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=26.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.|++++|+||+||||||+++.|++.+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 357799999999999999999999998764
No 228
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=8.5e-05 Score=64.12 Aligned_cols=28 Identities=29% Similarity=0.582 Sum_probs=23.9
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++| ++|+||||||||||++.|++...
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence 34556 89999999999999999998764
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.49 E-value=4.6e-05 Score=63.32 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+++|.+++|+|+||||||||++.|+...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999999998543
No 230
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.48 E-value=4.9e-05 Score=61.11 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+| +++|+|+|||||||++++|...+.
T Consensus 25 ~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 25 SKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp CSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 345 899999999999999999977653
No 231
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.47 E-value=6e-05 Score=67.80 Aligned_cols=28 Identities=18% Similarity=0.460 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++.+++|+||+||||||+++.|.+.++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3466999999999999999999987754
No 232
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.47 E-value=6.6e-05 Score=65.41 Aligned_cols=28 Identities=18% Similarity=0.379 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.+|.+++|+|+||+|||||++.|+...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999998764
No 233
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.47 E-value=8.8e-05 Score=65.13 Aligned_cols=27 Identities=33% Similarity=0.770 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|.+++|+|+||||||||+++|. ...
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 468899999999999999999999 653
No 234
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.46 E-value=6.2e-05 Score=66.06 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|++++|+|+||||||||+++|++...
T Consensus 167 l~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 167 LKGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp HSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred hcCCeEEEECCCCCcHHHHHHHhccccc
Confidence 3588999999999999999999987653
No 235
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.46 E-value=2.7e-05 Score=62.67 Aligned_cols=25 Identities=36% Similarity=0.511 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++++|+|+||||||||++.|.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5799999999999999999998864
No 236
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.45 E-value=1.6e-05 Score=79.86 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=28.6
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++.+..|++++|+||||||||||++.|++.+.
T Consensus 692 VSl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 692 INFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred cEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344567899999999999999999999998764
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.43 E-value=0.00018 Score=63.23 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=25.8
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
....|++++|+|++||||||++..|+..+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34678999999999999999999998775
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.42 E-value=8.6e-05 Score=61.26 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
++.|.+++|+|++||||||++..|+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 46699999999999999999999987
No 239
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.41 E-value=0.00011 Score=67.37 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+++|+|+||||||||+++|.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34999999999999999999998754
No 240
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.38 E-value=9.3e-05 Score=66.47 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.|.+++|+|+||+|||||++.|.+..
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCCEEEEECCCCccHHHHHHHHhccc
Confidence 57899999999999999999998764
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.37 E-value=9.2e-05 Score=67.98 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+|.+++|+||+||||||+++.|.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3478999999999999999999988754
No 242
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.37 E-value=7.7e-05 Score=62.56 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.|.+++|+|||||||||+++.|+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 466999999999999999999999873
No 243
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.37 E-value=5.2e-05 Score=76.26 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=26.3
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
+++.+.+|++++|+||||||||||+++|++
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344567899999999999999999999984
No 244
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.35 E-value=5.6e-05 Score=61.95 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=25.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+....|..++|+|++|||||||++.|.+..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999999997643
No 245
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=0.00011 Score=59.28 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
-.+++|+|++||||||+++.|.+.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999997764
No 246
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.29 E-value=0.0012 Score=61.79 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|.+|+|-|.-||||+|.++.|.+.+.
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ld 325 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALD 325 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcC
Confidence 3589999999999999999999998875
No 247
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.28 E-value=0.00011 Score=69.10 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=27.6
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC-CceeEe
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD-SLRFVV 121 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~-~~~~~~ 121 (284)
..|..++|+||+||||||++++|.+.++ ..+.+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giit 292 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVS 292 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEE
Confidence 4588899999999999999999998875 334433
No 248
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.28 E-value=3.2e-05 Score=68.09 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.5
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+|++++|+|+||+|||||++.|.+..
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccc
Confidence 35679999999999999999999998754
No 249
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.27 E-value=0.00012 Score=58.74 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+++|+|++||||||++..|...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 3579999999999999999997765
No 250
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.26 E-value=4.6e-05 Score=74.23 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L 110 (284)
.+++.+++|++++|+||||||||||++.|
T Consensus 340 ~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 340 NVSVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp SEEEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred cceeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 34445678999999999999999999765
No 251
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.26 E-value=0.00024 Score=62.80 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
-.+++|+|++||||||+++.|.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998765
No 252
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.25 E-value=7.2e-05 Score=72.85 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCHHHHH
Q 023332 81 SNPVCPPPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 81 ~~~~~~~~~g~ii~l~G~sGsGKSTl~ 107 (284)
..+++.+++|++++|+||||||||||+
T Consensus 35 ~~vsl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 35 KNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred eccEEEECCCCEEEEECCCCCCHHHHh
Confidence 344445778999999999999999997
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.24 E-value=0.00015 Score=63.56 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+|.+++|+|++|+||||++..|+..+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999998765
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.21 E-value=0.00024 Score=62.89 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=28.0
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+++...+|++++|+|++|+||||++..|+..+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344456789999999999999999999998765
No 255
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.20 E-value=0.00015 Score=68.52 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=24.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHH--HHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKK--LRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~--L~~~~ 114 (284)
+++|++++|+|+||||||||++. +.+..
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 56799999999999999999999 55554
No 256
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.19 E-value=0.00031 Score=57.73 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.|+.|+|+||+|+|||||+..|++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 37889999999999999999998874
No 257
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.19 E-value=0.00017 Score=64.17 Aligned_cols=26 Identities=23% Similarity=0.471 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..++|+||||+|||||++.|++.++
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35699999999999999999998764
No 258
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.17 E-value=0.00018 Score=62.07 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++|.+++|+|+||||||||+..|+...
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999997643
No 259
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.16 E-value=0.011 Score=51.10 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.+|++-|.-||||+++++.|.+.++
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ld 100 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMD 100 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcC
Confidence 478999999999999999999988875
No 260
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.11 E-value=7e-05 Score=68.37 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+| +++|+|+||||||||+++|....+
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 5668 999999999999999999966553
No 261
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.10 E-value=0.0002 Score=64.13 Aligned_cols=29 Identities=24% Similarity=0.194 Sum_probs=26.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++.|.++.|+|+||||||||++.|+...
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999998764
No 262
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.05 E-value=0.00027 Score=70.02 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..|.+++|+|||||||||+++.|+..
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999999764
No 263
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.05 E-value=0.00018 Score=72.04 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.9
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
++.+..|++++|+|||||||||+++.++.
T Consensus 667 sl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 667 DLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 33456799999999999999999999864
No 264
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.04 E-value=0.0004 Score=60.73 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+..+.|.||+|+||||+++.|+..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3467799999999999999999998764
No 265
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.03 E-value=0.00078 Score=58.84 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+|++++++|++|+||||++..|+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.02 E-value=0.00034 Score=56.63 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..++|+|++|||||||++.|.+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 267
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.01 E-value=0.00045 Score=54.03 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
+.+.+|+|||||||||++.+|.-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999964
No 268
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.00 E-value=5.4e-05 Score=63.73 Aligned_cols=25 Identities=24% Similarity=0.407 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+++|+||||||||||+++|+..+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 6789999999999999999988754
No 269
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.00058 Score=64.80 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+|..++|+||||+||||+++.|++.++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999998764
No 270
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.99 E-value=0.00053 Score=61.13 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..++.+++|+|++|+||||+++.|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999997654
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.98 E-value=0.00059 Score=59.47 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+..+.|.||+|+|||++++.|+..++
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567788999999999999999998775
No 272
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.98 E-value=0.00045 Score=58.66 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.-+.|+||+|+||||+++.|++.++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999988764
No 273
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.97 E-value=0.0004 Score=56.45 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..++|+|++|||||||++.|.+.
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999875
No 274
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.95 E-value=0.0003 Score=70.67 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L 110 (284)
...|++++|+|||||||||+++.+
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999999999999
No 275
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00049 Score=54.71 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|+|++|+||||+++.+++.+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998765
No 276
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.93 E-value=0.00031 Score=61.55 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q 023332 93 IVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~ 113 (284)
|+|+|+||+|||||++.|...
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 699999999999999998653
No 277
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.91 E-value=0.00033 Score=63.09 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
..| +++|+|||||||||+..+|.-
T Consensus 22 ~~g-~~~i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHH
Confidence 446 788999999999999999963
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.00044 Score=57.93 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
.++|.+++|+|+||+||||++..++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999877754
No 279
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.90 E-value=0.00047 Score=67.93 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
|++++|+|||||||||+++.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 889999999999999999999875
No 280
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.89 E-value=0.00061 Score=60.98 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.+|+|+|++|||||||++.|.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 281
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.89 E-value=0.00056 Score=56.80 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|.||+|+||||+++.++..+
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999997764
No 282
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.87 E-value=0.00097 Score=57.73 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..+.|.||+|+||||+++.|++.++
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998765
No 283
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.86 E-value=0.00063 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++..|+|+|++|+|||||++.|.+.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999999864
No 284
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.84 E-value=0.0011 Score=53.19 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
|.-++|+|+||+||||++..|.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 777999999999999999999774
No 285
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.84 E-value=0.0012 Score=56.77 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+||||+++.|+..++
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 55699999999999999999998765
No 286
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.83 E-value=0.00056 Score=61.20 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=37.3
Q ss_pred CcEEEEecH-----HHHHHHHHHhCC--CeEEEEEecCCHHHHHHHHHhhc---cC--CHHHHHHHHHH
Q 023332 181 YDIILRVDI-----QGAQTLRRVLGD--SAVFVFLMAESETALVERLVERK---TE--SREELLVRIAT 237 (284)
Q Consensus 181 ~~vvld~~~-----~~~~~l~~~~g~--~~~~I~l~~p~~~~l~~Rl~~R~---~~--~~~~i~~rl~~ 237 (284)
..||+|+.+ ..+..+...+.. ...+|||++| .+++.+|+.+|. +. +.++..+++..
T Consensus 261 ~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad-~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~ 328 (359)
T 2ga8_A 261 RIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDID-YEATEERVAKRHLQSGLVTTIAEGREKFRS 328 (359)
T ss_dssp CEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECC-HHHHHHHHHHHHHHTTSCSSHHHHHHHHHH
T ss_pred CEEEEEeehhhccccchhhhhhccccccceEEEEEECC-HHHHHHHHHHhhhccCCCCCHHHHHHHHHh
Confidence 567777733 234455555510 0178999997 699999999994 44 67777777764
No 287
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.82 E-value=0.00071 Score=61.50 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
+..|..++|+|+||+|||||.++|.+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 46689999999999999999999987
No 288
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.81 E-value=0.00048 Score=62.83 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
++.|.++.|+|+||||||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 3678999999999999999999774
No 289
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.81 E-value=0.0012 Score=55.93 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.-+.|.||+|+||||+++.|+..++
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 345689999999999999999988765
No 290
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.81 E-value=0.00046 Score=62.06 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
...| +++|+|||||||||++++|..
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3446 999999999999999999964
No 291
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.81 E-value=0.00056 Score=54.32 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|+|++|+||||+++.+++.+
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4567999999999999999998765
No 292
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.80 E-value=0.0023 Score=60.02 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=24.5
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.+++| ++|+||+|+|||||++.|+...+
T Consensus 61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence 345556 89999999999999999998764
No 293
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.79 E-value=0.0008 Score=61.83 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|.+++|+|||||||||++++|...++
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4578999999999999999999987653
No 294
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.76 E-value=0.0013 Score=65.44 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=26.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...|..++|+||||||||||++.|++.++
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 46678899999999999999999998875
No 295
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.0014 Score=59.69 Aligned_cols=27 Identities=30% Similarity=0.678 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+++| +.|.||+|||||.++++++...+
T Consensus 181 ~prG--vLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 181 QPKG--VILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp CCCC--EEEESCSSSSHHHHHHHHHHHHT
T ss_pred CCCc--eEEeCCCCCCHHHHHHHHHHhhC
Confidence 3455 89999999999999999998875
No 296
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.74 E-value=0.00053 Score=60.59 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+| +.+|+|+||||||||+.+|.-.+
T Consensus 23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 23 SDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 446 99999999999999999997543
No 297
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.72 E-value=0.0018 Score=56.59 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=25.3
Q ss_pred CCCCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 84 VCPPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 84 ~~~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
++... |.+++++|++|+||||++..|+..+
T Consensus 93 ~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 93 IPDKI-PYVIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp SCSSS-SEEEEEECSSCSSTTHHHHHHHHHH
T ss_pred ccCCC-CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 33444 8999999999999999999998765
No 298
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.72 E-value=0.00085 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..++|+|++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 299
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.72 E-value=0.00098 Score=54.26 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 91 LIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+.|.|++|+||||+++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998764
No 300
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.66 E-value=0.0008 Score=59.67 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023332 93 IVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~ 114 (284)
++|.||+|+||||+++.|++.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998864
No 301
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.65 E-value=0.0006 Score=65.58 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023332 93 IVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~ 114 (284)
++|+|+||||||||+++|++.+
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999999875
No 302
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.63 E-value=0.00033 Score=70.35 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=24.1
Q ss_pred CCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 023332 83 PVCPPPNPLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 83 ~~~~~~~g~ii~l~G~sGsGKSTl~~~L 110 (284)
+++.++.|++++|+|+||||||||++.|
T Consensus 661 Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 661 IDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred ceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 3344678999999999999999999985
No 303
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.0011 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..++|.|++|+||||+++.+++.+
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 304
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.62 E-value=0.0013 Score=50.94 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.-+.|.|++|+|||++++.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3448999999999999999998764
No 305
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.62 E-value=0.00093 Score=67.88 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
|.+++|+|||||||||+++.+ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 899999999999999999999 43
No 306
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.62 E-value=0.0026 Score=58.35 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+|.+++++|++|+||||++..|+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 307
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.61 E-value=0.00081 Score=63.47 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.+|.+++|+|+||||||||++.|+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999998764
No 308
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.61 E-value=0.00089 Score=53.62 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|++|+|||||++.|.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
No 309
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.61 E-value=0.0013 Score=54.05 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+.+.+|+|+|||||||++.+|.-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999543
No 310
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.002 Score=59.16 Aligned_cols=26 Identities=35% Similarity=0.661 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++=+.|.||+|||||+++++++..++
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34489999999999999999998875
No 311
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.002 Score=59.24 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++=|.|.||+|||||+++++++...+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 44589999999999999999998875
No 312
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.57 E-value=0.00025 Score=70.40 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.6
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHHHH-HH
Q 023332 85 CPPPNPLIIVISGPSGVGKDALIKK-LR 111 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~~~-L~ 111 (284)
+.++.|++++|+|+||||||||++. |.
T Consensus 518 l~i~~Geiv~I~G~nGSGKSTLl~~~L~ 545 (842)
T 2vf7_A 518 VRFPLGVMTSVTGVSGSGKSTLVSQALV 545 (842)
T ss_dssp EEEESSSEEEEECCTTSSHHHHCCCCCH
T ss_pred EEEcCCCEEEEEcCCCcCHHHHHHHHHH
Confidence 3467899999999999999999996 54
No 313
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.57 E-value=0.00097 Score=61.13 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023332 93 IVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~ 114 (284)
|+|+|+||||||||++.|.+..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998764
No 314
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.57 E-value=0.0013 Score=57.20 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...+.|+||+|+||||+++.|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3579999999999999999998865
No 315
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.56 E-value=0.0012 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.+++|+|++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3558999999999999999999865
No 316
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.55 E-value=0.0011 Score=61.04 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+|.+|+++|++|+||||++..|+..+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999998654
No 317
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.55 E-value=0.0018 Score=59.62 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...++|+|+||+|||||++.|.+..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999998753
No 318
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.0022 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++=|.|.||+|||||+++++|+..++
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34489999999999999999998875
No 319
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.53 E-value=0.0003 Score=70.41 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.6
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~~~L 110 (284)
.+++.++.|++++|+|+||||||||++.|
T Consensus 642 ~Vsl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 642 NVSVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SEEEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred cceEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 33445788999999999999999999985
No 320
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.52 E-value=0.0014 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999863
No 321
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.52 E-value=0.0011 Score=59.37 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.|.++.|.||+|||||||+..++..
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999765
No 322
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.51 E-value=0.019 Score=47.96 Aligned_cols=54 Identities=26% Similarity=0.392 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHcCCcEEEEecHHHHHHHHHH----hC-------------CCeEEEEEecCCHHHHHHHHHh
Q 023332 168 IPKKQIREYMAKGYDIILRVDIQGAQTLRRV----LG-------------DSAVFVFLMAESETALVERLVE 222 (284)
Q Consensus 168 ~~~~~i~~~l~~g~~vvld~~~~~~~~l~~~----~g-------------~~~~~I~l~~p~~~~l~~Rl~~ 222 (284)
...+.+...+..|.+++.-.+.+..+.+... .| ..+.++++++| ++.+.+||.+
T Consensus 105 ~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~~-p~~l~~rl~~ 175 (228)
T 2r8r_A 105 KRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDLP-PRELLERLRD 175 (228)
T ss_dssp BHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCCC-HHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecCC-HHHHHHHHHC
Confidence 3456777788999899988876533322111 12 12357889997 5889999865
No 323
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.50 E-value=0.0021 Score=57.49 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|++.++
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 45689999999999999999998775
No 324
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.50 E-value=0.0014 Score=56.92 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.-+.|+||+|+|||++++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35569999999999999999998765
No 325
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.49 E-value=0.0016 Score=57.89 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHH
Q 023332 90 PLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
+.+.+|+|||||||||++.+|.
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999873
No 326
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.48 E-value=0.0014 Score=62.94 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..|..++|+||+|+||||+++.|++.++
T Consensus 58 ~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 58 NQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3467899999999999999999998865
No 327
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=57.08 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.-+.|.||+|+|||++++.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4668999999999999999999876
No 328
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.47 E-value=0.00062 Score=62.39 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.+..++|+|+||||||||++.|....
T Consensus 154 lk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 154 LMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp ECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 3456789999999999999999997753
No 329
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.46 E-value=0.0016 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
|.+++++|++|+||||++..++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999855543
No 330
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.45 E-value=0.0013 Score=57.75 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|.||+|+||||+++.++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4568999999999999999998765
No 331
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.43 E-value=0.0025 Score=55.14 Aligned_cols=26 Identities=35% Similarity=0.721 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|+..++
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44588999999999999999988765
No 332
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.40 E-value=0.0029 Score=55.65 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.++...+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 45699999999999999999988765
No 333
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.38 E-value=0.0019 Score=55.20 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.++...+
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56699999999999999999988754
No 334
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.37 E-value=0.0018 Score=57.65 Aligned_cols=26 Identities=35% Similarity=0.461 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+..++|.||+|+||||+++.+++.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998764
No 335
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0015 Score=57.95 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q 023332 93 IVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~ 113 (284)
+.|+||+|+||||+++.|++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999999884
No 336
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.32 E-value=0.0019 Score=57.53 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
|..+.|.||+|+|||++++.++..+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 56799999999999999999988764
No 337
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0031 Score=58.29 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++=|.|.||+|+|||+++++|+...+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccC
Confidence 44489999999999999999998875
No 338
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.32 E-value=0.0033 Score=56.45 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..+.|+||+|+||||+++.|++.++
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999998875
No 339
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.31 E-value=0.0019 Score=52.56 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023332 93 IVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.|.||+|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999998754
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.31 E-value=0.0031 Score=58.09 Aligned_cols=26 Identities=31% Similarity=0.638 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccCC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRDS 116 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~~ 116 (284)
.-+.|.||+|+||||+++.|++.++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34899999999999999999998763
No 341
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.31 E-value=0.0033 Score=50.31 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
....-|+|+|++|+|||||++.|.+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 33456999999999999999999764
No 342
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.29 E-value=0.0021 Score=53.07 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++...++|.||+|+||||++..|+..+.
T Consensus 56 Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 56 PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345689999999999999999988764
No 343
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.26 E-value=0.0011 Score=56.44 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 023332 93 IVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.|.||+|+||||+++.|+....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999988654
No 344
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.24 E-value=0.0041 Score=55.63 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.+.-+.|.||+|+||||+++.|+...+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 356699999999999999999988765
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.24 E-value=0.0026 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 34899999999999999999764
No 346
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.004 Score=56.99 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
++=|.|.||+|+|||.++++|+...+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC
Confidence 44499999999999999999998875
No 347
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.23 E-value=0.0024 Score=57.01 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhccC
Q 023332 92 IIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.++|+||+|+||||+++.+++.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 799999999999999999987653
No 348
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.23 E-value=0.0033 Score=49.43 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+...|+|+|++|+|||||++.|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999753
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.22 E-value=0.0027 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|++|+|||||++.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999765
No 350
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.22 E-value=0.0022 Score=57.31 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.|++|+|||||+..++..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999988643
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.0035 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|++|+|||||++.|...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999764
No 352
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.20 E-value=0.0029 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.|++|+||||++..|+..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999999764
No 353
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.20 E-value=0.0035 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|++|+|||||++.|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 354
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.19 E-value=0.0012 Score=66.15 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=22.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCCHHHHH
Q 023332 82 NPVCPPPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 82 ~~~~~~~~g~ii~l~G~sGsGKSTl~ 107 (284)
.+++.++.|++++|+|+||||||||+
T Consensus 602 ~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 602 NIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp SEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred ccceEEcCCcEEEEEccCCCChhhhH
Confidence 34445678999999999999999997
No 355
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.19 E-value=0.0042 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.|.-++|+|+||+||||++..|.++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 4788999999999999999999875
No 356
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.19 E-value=0.0048 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 023332 93 IVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.|+||+|+||||+++.|+...+
T Consensus 52 vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 88999999999999999988764
No 357
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.19 E-value=0.0029 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999753
No 358
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.18 E-value=0.0034 Score=56.75 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.0
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.+|..++|+|++|+|||||++.|++.
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4577999999999999999999999775
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.18 E-value=0.0027 Score=48.93 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+++|.+|+|||||++.|...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 360
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.16 E-value=0.0027 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|++|+|||||++.|.+.
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCC
Confidence 355999999999999999999865
No 361
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.15 E-value=0.0032 Score=49.60 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445899999999999999999764
No 362
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.14 E-value=0.0031 Score=48.76 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 363
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.13 E-value=0.0045 Score=54.50 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.|+||+|+||||+++.++...+
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999988765
No 364
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.13 E-value=0.0029 Score=58.25 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+|.+|+++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 47899999999999999999998654
No 365
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.0037 Score=51.38 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
...++|+|.+|+|||||++.|....
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999997653
No 366
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.12 E-value=0.0014 Score=50.51 Aligned_cols=23 Identities=9% Similarity=0.312 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
-+.|.|++|+|||++++.|....
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 38899999999999999997653
No 367
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.12 E-value=0.0025 Score=51.44 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
++.|+|++||||||++..|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999865
No 368
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.12 E-value=0.0045 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.-+.|.||+|+|||++++.|+..++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3488999999999999999988765
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.11 E-value=0.0029 Score=49.53 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 34899999999999999999754
No 370
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.09 E-value=0.0042 Score=49.01 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...-|+|+|.+|+|||||++.|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999754
No 371
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0032 Score=48.95 Aligned_cols=23 Identities=26% Similarity=0.567 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34899999999999999999753
No 372
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.09 E-value=0.0013 Score=65.24 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=20.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHH
Q 023332 87 PPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~ 107 (284)
++.+++++|+|+||||||||+
T Consensus 33 iP~~~l~viTGvSGSGKSSLa 53 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLA 53 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHH
Confidence 678999999999999999998
No 373
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.0035 Score=48.65 Aligned_cols=22 Identities=23% Similarity=0.529 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|++|+|||||++.|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999754
No 374
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.08 E-value=0.0035 Score=48.77 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999754
No 375
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.08 E-value=0.0038 Score=52.20 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+|.+++++|++|+||||++..++..+
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 448999999999999999887776544
No 376
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.07 E-value=0.0034 Score=49.37 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999654
No 377
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.07 E-value=0.0052 Score=47.82 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+..-|+|+|.+|+|||||++.|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34566999999999999999999653
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.07 E-value=0.0035 Score=49.22 Aligned_cols=23 Identities=26% Similarity=0.628 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34899999999999999999754
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.06 E-value=0.0036 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|.+|+|||||++.|...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
No 380
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.05 E-value=0.0034 Score=48.81 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|++|+|||||++.|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999999754
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.05 E-value=0.0033 Score=48.99 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3899999999999999999653
No 382
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.05 E-value=0.0036 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 34899999999999999999764
No 383
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0034 Score=55.93 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998765
No 384
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.01 E-value=0.0033 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|.+|+|||||++.|.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4899999999999999999643
No 385
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.01 E-value=0.0053 Score=48.92 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999764
No 386
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.00 E-value=0.0036 Score=49.17 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345899999999999999999764
No 387
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.98 E-value=0.0032 Score=55.57 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhcc
Q 023332 93 IVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.|.||+|+||||+++.|++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998764
No 388
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.97 E-value=0.0034 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..|+|+|++|||||||.+.|.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999765
No 389
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.96 E-value=0.0043 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 023332 91 LIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
.-|+|+|.+|+|||||++.|..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3489999999999999999975
No 390
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.0051 Score=49.33 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
..-|+|+|.+|+|||||++.|..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 45699999999999999999975
No 391
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.95 E-value=0.0046 Score=52.52 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.|.|++|+|||++++.|+...+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4488999999999999999987654
No 392
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.94 E-value=0.0043 Score=49.33 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999753
No 393
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.94 E-value=0.007 Score=53.09 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhccCCceeEeee
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTA 123 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~~~~~~~~~~ 123 (284)
.|.-+.|+|+||+||||++-.|.++ +...+.++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~--G~~lv~DD 178 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK--NHLFVGDD 178 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT--TCEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc--CCEEEeCC
Confidence 4777999999999999999998764 33444444
No 394
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.93 E-value=0.0051 Score=48.97 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...-|+|+|++|+|||||++.|...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3566999999999999999999754
No 395
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.93 E-value=0.002 Score=64.51 Aligned_cols=23 Identities=39% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCCCCCeEEEEEcCCCCCHHHHH
Q 023332 85 CPPPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 85 ~~~~~g~ii~l~G~sGsGKSTl~ 107 (284)
..++++++++|+|+||||||+|+
T Consensus 19 ~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 19 VRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp CEEETTSEEEEEESTTSSSHHHH
T ss_pred eccCCCcEEEEECCCCCcHHHHH
Confidence 34788999999999999999998
No 396
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.93 E-value=0.0052 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|.+|+|||||+..|...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467899999999999999999765
No 397
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.92 E-value=0.0033 Score=57.94 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|.||+|+|||||++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999998754
No 398
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.0045 Score=49.57 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 399
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.0044 Score=50.14 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 455999999999999999999764
No 400
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.90 E-value=0.0045 Score=49.06 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 34899999999999999999754
No 401
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.90 E-value=0.0013 Score=61.91 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..| +.+|+|+||||||||+.+|.-.+
T Consensus 59 ~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 59 GGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp CCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred CCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 345 99999999999999999996553
No 402
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.90 E-value=0.0084 Score=59.24 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..++=|.|.||+|+|||+|++.++..++
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3355599999999999999999998876
No 403
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.90 E-value=0.0043 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|+..++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 45589999999999999999988764
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.90 E-value=0.0057 Score=49.17 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999764
No 405
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.90 E-value=0.0047 Score=47.80 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 023332 93 IVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~ 112 (284)
|+|+|.+|+|||||++.|..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 79999999999999999965
No 406
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.90 E-value=0.0076 Score=54.42 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|+...+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc
Confidence 46699999999999999999988765
No 407
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.89 E-value=0.0046 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999753
No 408
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.89 E-value=0.0047 Score=49.28 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999754
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0043 Score=48.72 Aligned_cols=23 Identities=35% Similarity=0.704 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999653
No 410
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.88 E-value=0.0042 Score=57.42 Aligned_cols=25 Identities=24% Similarity=0.507 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.|.||+|+||||+++.|++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3489999999999999999998764
No 411
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.87 E-value=0.0099 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhcc
Q 023332 92 IIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++|.|++|+||||++..+...+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999987654
No 412
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.87 E-value=0.0051 Score=54.90 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+..+.|.||+|+||||+++.++..+
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998754
No 413
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.87 E-value=0.0053 Score=48.98 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.-|+|+|.+|+|||||++.|.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3489999999999999999976543
No 414
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.86 E-value=0.0047 Score=51.56 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHH
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLR 111 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~ 111 (284)
.+.|.++.|.|++|+||||++..++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3568999999999999999998774
No 415
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.86 E-value=0.0042 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.|++|+||||++..|+..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 467899999999999999999999754
No 416
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.0052 Score=57.80 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..+.|.||+|+||||+++.|++.++
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998774
No 417
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.85 E-value=0.0041 Score=49.43 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
-|+|+|.+|+|||||++.|.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3799999999999999999764
No 418
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.85 E-value=0.0046 Score=49.73 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..|+|+|++|+|||||++.|...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999763
No 419
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.85 E-value=0.0046 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 420
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.85 E-value=0.0053 Score=56.66 Aligned_cols=25 Identities=32% Similarity=0.402 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.-+.|.||+|+|||++++.|+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999876
No 421
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.005 Score=49.24 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999888653
No 422
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.84 E-value=0.0051 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999764
No 423
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.83 E-value=0.004 Score=49.17 Aligned_cols=23 Identities=35% Similarity=0.392 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
..-|+|+|.+|+|||||++.|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 34589999999999999999974
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0065 Score=49.69 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|++|+|||||++.|...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999765
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.83 E-value=0.0051 Score=48.55 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 45899999999999999999754
No 426
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.83 E-value=0.0054 Score=56.70 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
..+|.+++|.|++|+||||++..++...
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999997653
No 427
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0053 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.730 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 428
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.81 E-value=0.0055 Score=53.83 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..+|.+++|.|++|+||||++..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999999998754
No 429
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.81 E-value=0.0061 Score=49.64 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+|++++++|+.||||||.+-.++..+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 458999999999999999888776554
No 430
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.81 E-value=0.0043 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=23.2
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.||+|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 345788899999999999999999754
No 431
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.80 E-value=0.0054 Score=54.80 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
....+|+|+|++|+||||++..|+..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999997654
No 432
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.79 E-value=0.006 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
+.-+.|.||+|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4668999999999999999998653
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.79 E-value=0.0051 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 434
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.78 E-value=0.0056 Score=48.18 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45899999999999999999754
No 435
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.76 E-value=0.0021 Score=64.59 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=20.4
Q ss_pred CCCCCeEEEEEcCCCCCHHHHH
Q 023332 86 PPPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~ 107 (284)
.++++++++|+|+||||||+|+
T Consensus 42 ~iP~~~lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 42 DLPRDALIVFTGLSGSGKSSLA 63 (993)
T ss_dssp EEESSSEEEEEESTTSSHHHHH
T ss_pred eccCCCEEEEECCCCCcHHHHH
Confidence 4688999999999999999998
No 436
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.76 E-value=0.0034 Score=55.40 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhccC
Q 023332 93 IVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.|.||+|+|||++++.|+..++
T Consensus 48 vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEECCCCccHHHHHHHHHHhCc
Confidence 89999999999999999988764
No 437
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.76 E-value=0.0053 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999754
No 438
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.76 E-value=0.0048 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHh
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
+..-|+|+|++|+|||||++.|..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999998864
No 439
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.76 E-value=0.0022 Score=64.32 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=20.3
Q ss_pred CCCCCeEEEEEcCCCCCHHHHH
Q 023332 86 PPPNPLIIVISGPSGVGKDALI 107 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~ 107 (284)
.++++++++|+|+||||||+|+
T Consensus 40 ~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp EEETTSEEEEEESTTSSHHHHH
T ss_pred eccCCcEEEEECCCCCCHHHHH
Confidence 3688999999999999999998
No 440
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.76 E-value=0.0037 Score=57.50 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.+|+|+|++|+||||++..|+..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998754
No 441
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.74 E-value=0.0037 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
..+.|.|++|+||||+++.++...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999987654
No 442
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.73 E-value=0.0059 Score=48.21 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999753
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.72 E-value=0.0059 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 444
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.71 E-value=0.0061 Score=48.19 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999754
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.71 E-value=0.0061 Score=48.65 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999754
No 446
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.70 E-value=0.0062 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 023332 91 LIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
.-|+|+|++|+|||||++.|..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999964
No 447
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.68 E-value=0.0066 Score=54.58 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHh
Q 023332 90 PLIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
+.+.+|+|+||+||||++.+|.=
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999953
No 448
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.67 E-value=0.0077 Score=48.58 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456999999999999999999754
No 449
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.67 E-value=0.0037 Score=54.96 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 91 LIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
.-+.|.||+|+|||++++.|+..++
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4589999999999999999988765
No 450
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.67 E-value=0.0063 Score=49.14 Aligned_cols=24 Identities=38% Similarity=0.618 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345899999999999999999764
No 451
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.66 E-value=0.0056 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+++|+|++|+|||||++.|.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4999999999999999999865
No 452
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.65 E-value=0.0065 Score=48.53 Aligned_cols=23 Identities=30% Similarity=0.673 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999764
No 453
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.65 E-value=0.0033 Score=62.39 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
...+..++|+||||+||||+++.|++.++
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 35577799999999999999999998764
No 454
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.64 E-value=0.006 Score=53.57 Aligned_cols=27 Identities=15% Similarity=0.222 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.|++|+||||++..++..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 366899999999999999999998753
No 455
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.63 E-value=0.0062 Score=48.84 Aligned_cols=23 Identities=26% Similarity=0.616 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999754
No 456
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.63 E-value=0.006 Score=53.42 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+++.-+|+|+|.+|+|||||++.|.+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344567999999999999999999764
No 457
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.0057 Score=53.90 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.|..+.|.||+|+|||++++.+++.+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998765
No 458
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.62 E-value=0.0076 Score=49.40 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHH
Q 023332 90 PLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L 110 (284)
++++.++|++|||||+++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHH
Confidence 679999999999999998776
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.61 E-value=0.0069 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999753
No 460
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.60 E-value=0.0067 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999754
No 461
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.60 E-value=0.007 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 34899999999999999999754
No 462
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.59 E-value=0.0065 Score=51.35 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|.+.
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 345999999999999999999764
No 463
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0067 Score=48.54 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 34899999999999999999754
No 464
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.58 E-value=0.0072 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34899999999999999999753
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0067 Score=49.40 Aligned_cols=23 Identities=35% Similarity=0.751 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 34899999999999999999753
No 466
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.57 E-value=0.0081 Score=47.66 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
+..-|+|+|++|+|||||++.|...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3556999999999999999999753
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.56 E-value=0.0074 Score=48.21 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 345999999999999999999753
No 468
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.56 E-value=0.0055 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 023332 91 LIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
.-|+|+|.+|+|||||++.|.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999964
No 469
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.55 E-value=0.0071 Score=54.91 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..+..++|+|++|+|||||.+.|.+.
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 44677999999999999999999764
No 470
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.54 E-value=0.0075 Score=48.23 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 45999999999999999998653
No 471
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.54 E-value=0.013 Score=54.71 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|+...+
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 45589999999999999999988764
No 472
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.52 E-value=0.007 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+..+.|.||+|+||||+++.+++.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999987653
No 473
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0079 Score=47.93 Aligned_cols=23 Identities=43% Similarity=0.754 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45999999999999999999754
No 474
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.51 E-value=0.0073 Score=48.90 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|++|+|||||++.|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999754
No 475
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.50 E-value=0.008 Score=50.23 Aligned_cols=23 Identities=22% Similarity=0.595 Sum_probs=19.8
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHH
Q 023332 88 PNPLIIVISGPSGVGKDALIKKL 110 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L 110 (284)
..|+.++++|++||||||+...+
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHH
Confidence 35889999999999999987665
No 476
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.50 E-value=0.0082 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..|+|+|.+|+|||||.+.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999864
No 477
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.49 E-value=0.0081 Score=48.12 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 345999999999999999999764
No 478
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.46 E-value=0.0092 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|.+|+|||||++.|.+.
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999764
No 479
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.01 Score=47.25 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999753
No 480
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.46 E-value=0.0078 Score=49.12 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 481
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.45 E-value=0.0069 Score=48.03 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999754
No 482
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.44 E-value=0.0073 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 023332 91 LIIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~ 112 (284)
.-|+|+|.+|+|||||++.|..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4489999999999999999964
No 483
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.43 E-value=0.0086 Score=48.57 Aligned_cols=24 Identities=38% Similarity=0.635 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|++|+|||||++.|...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456999999999999999999753
No 484
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.43 E-value=0.0079 Score=53.87 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 87 PPNPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 87 ~~~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.+.|.++.|.|++|+|||||+..|+..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999988654
No 485
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.43 E-value=0.0086 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|.+|+|||||++.|...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999999754
No 486
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.42 E-value=0.008 Score=48.23 Aligned_cols=21 Identities=33% Similarity=0.779 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 023332 92 IIVISGPSGVGKDALIKKLRE 112 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~ 112 (284)
-|+|+|.+|+|||||++.|..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999964
No 487
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.42 E-value=0.0075 Score=53.89 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
....++|+|++|+|||||++.|.+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999764
No 488
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.41 E-value=0.0097 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999753
No 489
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.39 E-value=0.0078 Score=53.78 Aligned_cols=22 Identities=18% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.|+|+|.+|||||||++.|.+.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999873
No 490
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.0085 Score=48.70 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
No 491
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.38 E-value=0.011 Score=47.93 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..-|+|+|.+|+|||||++.|...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 455999999999999999999753
No 492
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.37 E-value=0.0091 Score=47.77 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 89 NPLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 89 ~g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...-|+|+|.+|+|||||++.|...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3456999999999999999999653
No 493
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=95.36 E-value=0.0089 Score=58.03 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=24.7
Q ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 86 PPPNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 86 ~~~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.+.+++.++|+|++|+|||||++.|....
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhc
Confidence 35678999999999999999999998653
No 494
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.35 E-value=0.0088 Score=56.03 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhccC
Q 023332 90 PLIIVISGPSGVGKDALIKKLRESRD 115 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~~~ 115 (284)
+.-+.|.||+|+|||++++.|+...+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 45689999999999999999988764
No 495
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.34 E-value=0.0056 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHHHHhc
Q 023332 90 PLIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 90 g~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
...|+|+|.+|+|||||++.|.+.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 456899999999999999999764
No 496
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.32 E-value=0.012 Score=52.81 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhc
Q 023332 93 IVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 93 i~l~G~sGsGKSTl~~~L~~~ 113 (284)
|+|+|++|+|||||++.|...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHhCC
Confidence 799999999999999998543
No 497
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.30 E-value=0.0092 Score=55.90 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCCHHHHHHHHHhcc
Q 023332 88 PNPLIIVISGPSGVGKDALIKKLRESR 114 (284)
Q Consensus 88 ~~g~ii~l~G~sGsGKSTl~~~L~~~~ 114 (284)
.++.+|+|+|++|+||||++..|+..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999998544
No 498
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.29 E-value=0.01 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
..|+|+|.+|+|||||++.|.+.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35999999999999999999764
No 499
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.28 E-value=0.0092 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhc
Q 023332 91 LIIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 91 ~ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.-|+|+|.+|+|||||++.|...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 34899999999999999999753
No 500
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.27 E-value=0.01 Score=50.57 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhc
Q 023332 92 IIVISGPSGVGKDALIKKLRES 113 (284)
Q Consensus 92 ii~l~G~sGsGKSTl~~~L~~~ 113 (284)
.|+|+|.+|||||||.+.|.+.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999764
Done!