RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023332
(284 letters)
>gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional.
Length = 206
Score = 244 bits (625), Expect = 1e-81
Identities = 103/198 (52%), Positives = 143/198 (72%), Gaps = 1/198 (0%)
Query: 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF 146
P PL++VISGPSGVGKDA++ ++RE + FVVTAT+RP RPGE +G DY+FV+ EEF
Sbjct: 10 PAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEF 69
Query: 147 LTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFV 206
MI +NELLE+A VYG+Y G+PK +R+ +A G D+I++VD+QGA +++R++ + AVF+
Sbjct: 70 REMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPE-AVFI 128
Query: 207 FLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266
FL S L RL R+TES EEL R+ATA E++ + FDYVVVN E +LD AV +
Sbjct: 129 FLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPEFDYVVVNPEDRLDEAVAQI 188
Query: 267 ESIIDAEKAKVQQRSAVI 284
+II AEK++V R +
Sbjct: 189 MAIISAEKSRVHPRRIEL 206
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 238 bits (609), Expect = 4e-79
Identities = 85/189 (44%), Positives = 126/189 (66%), Gaps = 3/189 (1%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
L+IV+SGPSG GK L+K L E +L+ V+AT+R RPGE +G DY+FVSKEEF MI
Sbjct: 6 LLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMI 65
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMA 210
+ E LE+A V+G+Y G P+ + E +A G D++L +D QGA+ +++ + D AV +F++
Sbjct: 66 ENGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPD-AVSIFILP 124
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270
S L RL R T+S E + R+A AREEI H +DYV+VN + LD A++ +++II
Sbjct: 125 PSLEELERRLRGRGTDSEEVIARRLAKAREEIAHASEYDYVIVNDD--LDTALEELKAII 182
Query: 271 DAEKAKVQQ 279
AE+ + +
Sbjct: 183 RAERLRRSR 191
>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase. Members of this family
are the enzyme guanylate kinase, also called GMP kinase.
This enzyme transfers a phosphate from ATP to GMP,
yielding ADP and GDP [Purines, pyrimidines, nucleosides,
and nucleotides, Nucleotide and nucleoside
interconversions].
Length = 179
Score = 222 bits (569), Expect = 2e-73
Identities = 86/182 (47%), Positives = 123/182 (67%), Gaps = 3/182 (1%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
L+IVISGPSG GK L+K L E +L+F ++AT+R RPGE +G DY+FVSKEEF MI
Sbjct: 1 LLIVISGPSGAGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMI 60
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMA 210
E LE+A V+G+Y G PK + E +A G D++L +D+QGA+ +++ D AV +F++
Sbjct: 61 KAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPD-AVSIFILP 119
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270
S L RL +R T+S E + R+A A++EI H FDYV+VN + L+ AV+ ++SII
Sbjct: 120 PSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADEFDYVIVNDD--LEKAVEELKSII 177
Query: 271 DA 272
A
Sbjct: 178 LA 179
>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and
metabolism].
Length = 191
Score = 210 bits (538), Expect = 1e-68
Identities = 81/189 (42%), Positives = 128/189 (67%), Gaps = 4/189 (2%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
L+IV+SGPSGVGK L+K L E D LRF V+AT+R RPGE +G DY+FV++EEF +
Sbjct: 4 GLLIVLSGPSGVGKSTLVKALLE-DDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL 62
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I+++E LE+A +G+Y G ++ + + +A+G D+IL +D+QGA +++ + + AV +F++
Sbjct: 63 IERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPN-AVSIFIL 121
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S L RL R T+S E + R+ A++EI H FDYV+VN + L+ A++ ++SI
Sbjct: 122 PPSLEELERRLKGRGTDSEEVIARRLENAKKEISHADEFDYVIVNDD--LEKALEELKSI 179
Query: 270 IDAEKAKVQ 278
I AE+ +
Sbjct: 180 ILAERLRRD 188
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 165 bits (419), Expect = 2e-51
Identities = 54/119 (45%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 92 IIVISGPSGVGKDALIKKLRESRD-SLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
+IV+SGPSGVGK L+K+L E D + F V+ T+R RPGE +G DY+FVSKEEF +I
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
+ E LE+A +G+Y G K + E +A+G +IL +D+QGA+ +++ AV +F++
Sbjct: 61 ENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKK-SYPDAVSIFIL 118
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 150 bits (381), Expect = 4e-45
Identities = 81/184 (44%), Positives = 108/184 (58%), Gaps = 6/184 (3%)
Query: 92 IIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
IV+SGPSGVGK + K L E + + V+ T+RP RPGE +GKDY+FVSKEE I
Sbjct: 4 PIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMENDI 63
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRR-VLGDSAVFVFLM 209
NE LEYA G+Y G K+ I + G IL VDIQG + LR+ L S + VF+
Sbjct: 64 SANEFLEYAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAEL--SPISVFIK 121
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S L RL R TE E++ R+ A +E +H FDY++VN + LD A K ++ I
Sbjct: 122 PPSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQHYALFDYIIVNDD--LDEAYKKLKEI 179
Query: 270 IDAE 273
++AE
Sbjct: 180 LEAE 183
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 140 bits (356), Expect = 2e-41
Identities = 70/178 (39%), Positives = 103/178 (57%), Gaps = 6/178 (3%)
Query: 99 SGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLE 157
SGVGK L+ +L + D+ VV+ T+RP RPGE NG DY+FVSKEEF I LE
Sbjct: 1 SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60
Query: 158 YALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLR-RVLGDSAVFVFLMAESETAL 216
+ G+Y G K+ IR+ KG +L +D QG + LR L + +F+ S L
Sbjct: 61 WGEYEGNYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQL--YPIVIFIAPPSSEEL 118
Query: 217 VERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274
RL +R TE+ E + R+A A++E + FDYV+VN + L+ A + ++ I++AE+
Sbjct: 119 ERRLRQRGTETSERIQKRLAAAQKEAQEYHLFDYVIVNDD--LEDAYEELKEILEAEQ 174
>gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional.
Length = 186
Score = 133 bits (337), Expect = 1e-38
Identities = 63/181 (34%), Positives = 99/181 (54%), Gaps = 2/181 (1%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
P + +IS +G GK +I+ L E F ++ T+R RPG+E GK Y+F++ EEF
Sbjct: 4 PKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKG 63
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
I E LE+A V+ +Y G PK I + +G I+ +D+QGA+ ++ + V +F+
Sbjct: 64 IADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIE 123
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
SE ERL+ R T+S E + RI E+ FDY ++N L+ A+ +E+I
Sbjct: 124 PPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANEFDYKIIN--DDLEDAIADLEAI 181
Query: 270 I 270
I
Sbjct: 182 I 182
>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase.
Length = 398
Score = 97.2 bits (242), Expect = 4e-23
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 5/166 (3%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
IVISGPSGVGK LI L +E F V+ T+R R E++G Y+F + I
Sbjct: 138 IVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK 197
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
+ LE+A V+G+ G + + G IL +D+QGA+++R + A+F+F+
Sbjct: 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLE-AIFIFICPP 256
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKN---FDYVVVN 254
S L +RL R TE+ E++ R+ A E++ K+ FD+++ N
Sbjct: 257 SMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYN 302
>gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 78.2 bits (193), Expect = 2e-17
Identities = 54/175 (30%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 93 IVISGPSGVGKDALIKKLRE---SRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
I + GPSG GKD L+ R R L FV +RP G E D+ +S+ EF T
Sbjct: 8 IAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGE---DHDALSEAEFNTR 64
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
+ +G GIP +I ++A G +++ RR V V +
Sbjct: 65 AGQGAFALSWQAHGLSYGIP-AEIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLV-VCIT 122
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVK 264
A E L +RL ER ESREE+L R+ AR D ++ G+L+ A +
Sbjct: 123 ASPEV-LAQRLAERGRESREEILARL--ARAARYTAGPGDVTTIDNSGELEDAGE 174
>gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PMID:15231805), including
phosphites as well as phosphonates. PhnN in E. coli
shows considerable homology to guanylate kinases (EC
2.7.4.8), and has actually been shown to act as a ribose
1,5-bisphosphokinase (PRPP forming). This suggests an
analogous kinase reaction for phosphonate metabolism,
converting 5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP [Central intermediary metabolism,
Phosphorus compounds].
Length = 179
Score = 65.1 bits (159), Expect = 8e-13
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 17/187 (9%)
Query: 93 IVISGPSGVGKDALIKKLRE---SRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
I + GPSG GKD L+ R + FV +RP G EN + +S EEF
Sbjct: 4 IYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGEN---HIALSTEEFDHR 60
Query: 150 IDKNELLEYALVY---GDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFV 206
D +AL + G GIP +I +++ G +++ R+ + V
Sbjct: 61 EDGG---AFALSWQAHGLSYGIP-AEIDQWLEAGDVVVVNGSRAVLPEARQRY--PNLLV 114
Query: 207 FLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLV 266
+ S L +RL R ESREE+ R+ AR D ++ G L+VA + +
Sbjct: 115 VNITASPDVLAQRLAARGRESREEIEERL--ARSARFAAAPADVTTIDNSGSLEVAGETL 172
Query: 267 ESIIDAE 273
++ E
Sbjct: 173 LRLLRQE 179
>gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.
Length = 186
Score = 50.1 bits (120), Expect = 2e-07
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+I + GPSG GKD+L+ LR+ + V A RP +++ +S++EF T
Sbjct: 4 LIWLMGPSGSGKDSLLAALRQREQTQLLV--AHRYITRPASAGSENHIALSEQEFFTRAG 61
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL---RVDIQGAQTLRRVLGDSAVFVFL 208
+N G Y G+ +I ++ G+D+++ R + A+ + SA+
Sbjct: 62 QNLFALSWHANGLYYGV-GIEIDLWLHAGFDVLVNGSRAHLPQARARYQ----SALLPVC 116
Query: 209 MAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVES 268
+ S L +RL R E+ E+ R+A A + D +N +G L +V + +
Sbjct: 117 LQVSPEILRQRLENRGRENASEINARLARA----ARYQPQDCHTLNNDGSLRQSVDTLLT 172
Query: 269 II 270
++
Sbjct: 173 LL 174
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 36.9 bits (86), Expect = 0.006
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 205 FVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLD---- 260
F+ ++A +ER V+R SREE+ RIA + K ++ DYV+ N G LD
Sbjct: 136 FIVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKLIERADYVIYN-NGTLDELKA 194
Query: 261 VAVKLVESIIDA 272
+L + ++ A
Sbjct: 195 QTEQLYQVLLQA 206
>gnl|CDD|206669 cd01882, BMS1, Bms1, an essential GTPase, promotes assembly of
preribosomal RNA processing complexes. Bms1 is an
essential, evolutionarily conserved, nucleolar protein.
Its depletion interferes with processing of the 35S
pre-rRNA at sites A0, A1, and A2, and the formation of
40S subunits. Bms1, the putative endonuclease Rc11, and
the essential U3 small nucleolar RNA form a stable
subcomplex that is believed to control an early step in
the formation of the 40S subumit. The C-terminal domain
of Bms1 contains a GTPase-activating protein (GAP) that
functions intramolecularly. It is believed that Rc11
activates Bms1 by acting as a guanine-nucleotide
exchange factor (GEF) to promote GDP/GTP exchange, and
that activated (GTP-bound) Bms1 delivers Rc11 to the
preribosomes.
Length = 231
Score = 36.2 bits (84), Expect = 0.012
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 80 DSNPVCPPPNPLIIVISGPSGVGKDALIKKL 110
D P PPP L++V+ GP GVGK LI+ L
Sbjct: 31 DRTPEEPPP--LVVVVVGPPGVGKSTLIRSL 59
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 33.0 bits (75), Expect = 0.050
Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 14/115 (12%)
Query: 92 IIVISGPSGVGKDALIKKLRE-------SRDSLRFVVTATSRPMRPGEENGKDYYFVSKE 144
II+I+GP G GK L KKL E S D L + GE + D E
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGL--AELDDGELDDIDIDLELLE 58
Query: 145 EFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVL 199
E L +EL + V + + E + L + + L+R L
Sbjct: 59 EIL-----DELAKQEWVIDGVRESTLELRLEEADLVVFLDLPLPACRFRLLKRRL 108
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 31.5 bits (72), Expect = 0.068
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTAT 124
II I+G SG GK + KKL E VV
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33
>gnl|CDD|237040 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 34.2 bits (79), Expect = 0.069
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I V++GPSGVGK +LI +L
Sbjct: 174 ITVVAGPSGVGKSSLINRL 192
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 32.2 bits (74), Expect = 0.090
Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFV-VTATSRPMRPGEENGKDYYFVSKEEFL 147
I V++G SG GK L+++L + R V V A S + ++ L
Sbjct: 3 GAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLG--------------TPKDLL 48
Query: 148 TMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVD 188
I L L G + + I + + + +L +D
Sbjct: 49 RKI--LRALGLPLSGGTTAEL-LEAILDALKRRGRPLLIID 86
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 33.0 bits (76), Expect = 0.10
Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 19/187 (10%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK 152
I+I GP G GK L KKL + L T +R + EE IDK
Sbjct: 3 ILILGPPGAGKSTLAKKLAK---KLGLPHLDTGDILRAAIAERTELG----EEIKKYIDK 55
Query: 153 NELLEYALVYGDYKGIPKKQIREYMAKGYDIILRV--DIQGAQTLRRVLGDSAV---FVF 207
EL+ +V G K+++ E K I+ + A+ L+R+L + V V
Sbjct: 56 GELVPDEIVNGLV----KERLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVI 111
Query: 208 LMAESETALVERLV---ERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVK 264
+ E L+ERL+ R+ ++ E + R+ E+ + + V ++ G+++ +
Sbjct: 112 ELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLIEYYSVTIDGSGEIEEVLA 171
Query: 265 LVESIID 271
+ +
Sbjct: 172 DILKALS 178
>gnl|CDD|223203 COG0125, Tmk, Thymidylate kinase [Nucleotide transport and
metabolism].
Length = 208
Score = 33.0 bits (76), Expect = 0.12
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 30/207 (14%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
+ IVI G G GK + L+E + V T P G G+ +
Sbjct: 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPG--GTPIGEKIRELLLNGEEK 59
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDII---------------LRVDIQGAQ 193
+ K E L +A D ++ I+ + +G +I +D+
Sbjct: 60 LSPKAEALLFAA---DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVL 116
Query: 194 TLRRVLGDSA---VFVFLMAESETALVERLVERKTESRE------ELLVRIATAREEIKH 244
L + ++L E AL ER+ +R E L ++ E+
Sbjct: 117 ALNEFAPGGLKPDLTLYLDVPPEVAL-ERIRKRGELRDRFEKEDDEFLEKVREGYLELAA 175
Query: 245 VKNFDYVVVNAEGKLDVAVKLVESIID 271
+V++A L+ + + I+
Sbjct: 176 KFPERIIVIDASRPLEEVHEEILKILK 202
>gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 249
Score = 32.9 bits (76), Expect = 0.14
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 159 ALVYGDYKGIPKKQIREYMAKGYDIIL--RVDIQGAQTLRRV---LGDSAVFV-FLMAES 212
ALV G +G+ + G D+++ R D + A+ L LG A V + +
Sbjct: 9 ALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDK 68
Query: 213 ET--ALVERLVER 223
A V VER
Sbjct: 69 AALEAAVAAAVER 81
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 31.6 bits (72), Expect = 0.18
Identities = 31/136 (22%), Positives = 43/136 (31%), Gaps = 20/136 (14%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDK 152
I+I+G G GK L K+L E R A + + +E
Sbjct: 1 ILITGTPGSGKTTLAKELAE-RLGDVLRDLAKENGLVLELDEEITDESKRLDEDKLAKLL 59
Query: 153 NELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAES 212
++L +K I E II L VFV L A+
Sbjct: 60 DKL--------------EKIIEELAEGENVII----DGHLAELELERFKDLVFVVLRADP 101
Query: 213 ETALVERLVERKTESR 228
E L+ERL +R
Sbjct: 102 EE-LLERLKKRGYSEE 116
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 31.8 bits (72), Expect = 0.21
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 66 ELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRE 112
E L L +L A P ++++GPSG GK +L+++L E
Sbjct: 7 EELERLLDALRRARS-------GGPPSVLLTGPSGTGKTSLLRELLE 46
>gnl|CDD|129208 TIGR00101, ureG, urease accessory protein UreG. This model
represents UreG, a GTP hydrolase that acts in the
assembly of the nickel metallocenter of urease. It is
found only in urease-positive species, although some
urease-positive species (e.g. Bacillus subtilis) lack
this protein. A similar protein, hypB, is an accessory
protein for expression of hydrogenase, which also uses
nickel [Central intermediary metabolism, Nitrogen
metabolism].
Length = 199
Score = 31.8 bits (72), Expect = 0.26
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 90 PLIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
PL I ++GP G GK ALI+ L R R + V D Y EFL
Sbjct: 1 PLKIGVAGPVGSGKTALIEALTRALRQKYQLAVITN------------DIYTQEDAEFLV 48
Query: 149 MIDKNELLEYALVYG-DYKGIPKKQIRE 175
KN L + G + G P IRE
Sbjct: 49 ---KNSALPPERILGVETGGCPHTAIRE 73
>gnl|CDD|233761 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in
this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 31.6 bits (72), Expect = 0.28
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 36/194 (18%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
+II ISGP G GK + K L E SL+ + G + ++ + L +I
Sbjct: 1 MIITISGPPGSGKTTVAKILAEKL-SLKLI------------SAGDIFRELAAKMGLDLI 47
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSA-VFVFLM 209
E L YA + ++I E K +++L + G ++ + A V ++L
Sbjct: 48 ---EFLNYAEENPEIDKKIDRRIHEIALKEKNVVLESRLAGW-----IVREYADVKIWLK 99
Query: 210 AESETALVERLVER----KTESREELLVRIATAREEIKHVKNFDY-------VVVNAEGK 258
A E R+ +R T +R E + R + + D +V+N
Sbjct: 100 APLEVR-ARRIAKREGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIYDLVINT-SN 157
Query: 259 LDV-AVKLVESIID 271
D V ++ +D
Sbjct: 158 WDPNNVDIILDALD 171
>gnl|CDD|224533 COG1618, COG1618, Predicted nucleotide kinase [Nucleotide transport
and metabolism].
Length = 179
Score = 31.1 bits (71), Expect = 0.44
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRE 112
+ I I+G GVGK L+ K+ E
Sbjct: 3 KMAMKIFITGRPGVGKTTLVLKIAE 27
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 31.1 bits (71), Expect = 0.57
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 88 PNPLIIVISGPSGVGK----DALIKKLRE 112
N +I I+G G GK +AL ++LRE
Sbjct: 49 GNAHVIGITGVPGAGKSTLIEALGRELRE 77
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 30.2 bits (69), Expect = 0.70
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 92 IIVISGPSGVGKDALIKKL 110
V++G SGVGK L+ L
Sbjct: 37 TSVLAGQSGVGKSTLLNAL 55
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 29.4 bits (66), Expect = 1.0
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKL-RES-RDSLRFV-VTATSRPMRPGEENGKDYYFVS 142
PPP L++ GP G GK L + + E R F+ + A+ ++ V
Sbjct: 17 PPPKNLLLY--GPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVR 74
Query: 143 KEEFLTMIDKNELL 156
L K +L
Sbjct: 75 LLFELAEKAKPGVL 88
>gnl|CDD|224985 COG2074, COG2074, 2-phosphoglycerate kinase [Carbohydrate transport
and metabolism].
Length = 299
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 87 PPNPLIIVISGPSGVGK 103
PLII+I G SGVGK
Sbjct: 86 MKRPLIILIGGASGVGK 102
>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large
subunit. Anthranilate (2-aminobenzoate) is an
intermediate of tryptophan (Trp) biosynthesis and
degradation. Members of this family are the large
subunit of anthranilate 1,2-dioxygenase, which acts in
Trp degradation by converting anthranilate to catechol.
Closely related paralogs typically are the benzoate
1,2-dioxygenase large subunit, among the larger set of
ring-hydroxylating dioxygenases [Energy metabolism,
Amino acids and amines].
Length = 438
Score = 30.3 bits (68), Expect = 1.1
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 166 KGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM-AESETALVERL 220
+G+ K +I Y +G+ + + +D+ +L LGD+ VF+ +M A+S T +E L
Sbjct: 132 RGLKKARIASY--RGF-VFVSLDVAATDSLEDFLGDARVFLDMMVAQSPTGELEVL 184
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 29.7 bits (68), Expect = 1.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 92 IIVISGPSGVGKDALIKKL 110
V+ G SGVGK L+ L
Sbjct: 87 TSVLVGQSGVGKSTLLNAL 105
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 29.3 bits (65), Expect = 1.3
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 2/61 (3%)
Query: 90 PLIIVISGPSGVGKDALIKKL--RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
+I+I GP G GK L + L + + + K+
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 148 T 148
+
Sbjct: 62 S 62
>gnl|CDD|237475 PRK13695, PRK13695, putative NTPase; Provisional.
Length = 174
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 93 IVISGPSGVGKDALIKKLRE 112
I I+GP GVGK L+ K+ E
Sbjct: 3 IGITGPPGVGKTTLVLKIAE 22
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 30.5 bits (68), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 88 PNPLIIVISGPSGVGKDALIKKL 110
P P I+ + GP G GK LI+ L
Sbjct: 67 PPPFIVAVVGPPGTGKSTLIRSL 89
>gnl|CDD|217465 pfam03266, NTPase_1, NTPase. This domain is found across all
species from bacteria to human, and the function was
determined first in a hyperthermophilic bacterium to be
an NTPase. The structure of one member-sequence
represents a variation of the RecA fold, and implies
that the function might be that of a DNA/RNA modifying
enzyme. The sequence carries both a Walker A and Walker
B motif which together are characteristic of ATPases or
GTPases. The protein exhibits an increased expression
profile in human liver cholangiocarcinoma when compared
to normal tissue.
Length = 168
Score = 29.5 bits (67), Expect = 1.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 93 IVISGPSGVGKDALIKKLRE 112
I I+GP GVGK L+KK+ E
Sbjct: 2 IFITGPPGVGKTTLVKKVIE 21
>gnl|CDD|234321 TIGR03708, poly_P_AMP_trns, polyphosphate:AMP phosphotransferase.
Members of this protein family contain a domain
duplication. The characterized member from Acinetobacter
johnsonii is polyphosphate:AMP phosphotransferase (PAP),
which can transfer the terminal phosphate from poly(P)
to AMP, yielding ADP. In the opposite direction, this
enzyme can synthesize poly(P). Each domain of this
protein family is homologous to polyphosphate kinase, an
enzyme that can run in the forward direction to extend a
polyphosphate chain with a new terminal phosphate from
ATP, or in reverse to make ATP (or GTP) from ADP (or
GDP) [Central intermediary metabolism, Phosphorus
compounds].
Length = 493
Score = 30.0 bits (68), Expect = 1.6
Identities = 17/46 (36%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP-----MRP 130
P+II+I G G GK I L E D A RP RP
Sbjct: 40 PVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEERERP 85
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 29.6 bits (67), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 89 NPLIIVISGPSGVGKDALIKKL 110
P+I V+ GP+G GK L++ L
Sbjct: 86 QPVIGVVYGPTGCGKSQLLRNL 107
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases are
sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and tend
to undergo disruption to form pseudogenes. A unique
feature of all eukaryotic and certain bacterial KAP
NTPases is the presence of two or four transmembrane
helices inserted into the P-loop NTPase domain. These
transmembrane helices anchor KAP NTPases in the membrane
such that the P-loop domain is located on the
intracellular side.
Length = 301
Score = 29.7 bits (67), Expect = 1.7
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 85 CPPPNPLIIVISGPSGVGKDALIKKLRE 112
+I + G G GK + + L +
Sbjct: 15 PSLAPGFVIGLYGAWGSGKTSFLNLLED 42
>gnl|CDD|240071 cd04720, BAH_Orc1p_Yeast, BAH, or Bromo Adjacent Homology domain,
as present in Orc1p, which again is part of the
Saccharomyces cerevisiae Sir1-origin recognition
complex, and as present in Sir3p. The Orc1p BAH doman
functions in epigenetic silencing. BAH domains are found
in a variety of proteins playing roles in
transcriptional silencing and the remodeling of
chromatin. It is assumed that in most or all of these
instances the BAH domain mediates protein-protein
interactions.
Length = 179
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 129 RPGEENGKDYYFVSKEEFLTMIDKNELL 156
R E N YY EF + +KNEL
Sbjct: 95 RWFEINPARYYKQFDPEFRSESNKNELY 122
>gnl|CDD|235958 PRK07194, fliG, flagellar motor switch protein G; Reviewed.
Length = 334
Score = 29.6 bits (67), Expect = 1.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 203 AVF-VFLMAESETALVERLVERKTESREELLVRIA 236
AVF FL ES A+++ L E + ++++L RIA
Sbjct: 133 AVFLAFLPPESAAAVLKYLPE---DRQDDILYRIA 164
>gnl|CDD|180682 PRK06761, PRK06761, hypothetical protein; Provisional.
Length = 282
Score = 29.3 bits (66), Expect = 1.9
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 13/93 (13%)
Query: 92 IIVISGPSGVGKDALIK----KLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
+I+I G G GK K L ++ + + P + +G + +KEEF
Sbjct: 5 LIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYL--EGNLDHPADYDGVACF--TKEEFD 60
Query: 148 TMID-----KNELLEYALVYGDYKGIPKKQIRE 175
++ K LL+ L GDY +P ++I+
Sbjct: 61 RLLSNYPDFKEVLLKNVLKKGDYYLLPYRKIKN 93
>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta), together with SR-alpha, forms the
heterodimeric signal recognition particle (SRP). Signal
recognition particle receptor, beta subunit (SR-beta).
SR-beta and SR-alpha form the heterodimeric signal
recognition particle (SRP or SR) receptor that binds SRP
to regulate protein translocation across the ER
membrane. Nascent polypeptide chains are synthesized
with an N-terminal hydrophobic signal sequence that
binds SRP54, a component of the SRP. SRP directs
targeting of the ribosome-nascent chain complex (RNC) to
the ER membrane via interaction with the SR, which is
localized to the ER membrane. The RNC is then
transferred to the protein-conducting channel, or
translocon, which facilitates polypeptide translation
across the ER membrane or integration into the ER
membrane. SR-beta is found only in eukaryotes; it is
believed to control the release of the signal sequence
from SRP54 upon binding of the ribosome to the
translocon. High expression of SR-beta has been observed
in human colon cancer, suggesting it may play a role in
the development of this type of cancer.
Length = 202
Score = 29.2 bits (66), Expect = 2.0
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 29/110 (26%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF-LTMID 151
+++ GPS GK AL KL + + T TS E N +Y S + LT++D
Sbjct: 3 VLLLGPSDSGKTALFTKLT----TGKVRSTVTSI-----EPNVASFYSNSSKGKKLTLVD 53
Query: 152 -------KNELLEY------ALVYG-DYKGIPK--KQIREYMAKGYDIIL 185
+++LLEY A+V+ D K + + E++ YDI+
Sbjct: 54 VPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFL---YDILT 100
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 29.2 bits (66), Expect = 2.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKLRE 112
P +II I+G SG GK + K+L E
Sbjct: 4 KPEKVIIIGIAGGSGSGKTTVAKELSE 30
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 29.5 bits (67), Expect = 2.1
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 8/43 (18%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKL-----RESRDSLRFVVTA 123
P N + I G +G GK A+ K + + D VVT
Sbjct: 39 RPSN---VFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTV 78
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 29.4 bits (66), Expect = 2.2
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 21/71 (29%)
Query: 62 VKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRE--------S 113
++ LLRS+ PP PL ++I G SGVGK L L S
Sbjct: 240 ARRYRLLRSIRR-------------PPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVS 286
Query: 114 RDSLRFVVTAT 124
D++R V+ A
Sbjct: 287 TDAVREVLRAM 297
>gnl|CDD|218198 pfam04662, Luteo_PO, Luteovirus P0 protein. This family of
proteins may be involved in suppression of PTGS a plant
defence mechanism.
Length = 208
Score = 28.9 bits (65), Expect = 2.5
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 36 RFHHSLSLTPHFFSSNLRMNHTQTAAVKKAELLRSLEASLGHAFDSNPVC 85
RF + P + + + T V + L R+ +SLG +P C
Sbjct: 79 RFGLACGYPPASTTGRIDLRLPSTKDVYRLFLQRNSSSSLGERLQRHPEC 128
>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase;
Reviewed.
Length = 307
Score = 28.9 bits (66), Expect = 2.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 87 PPNPLIIVISGPSGVGKDAL 106
P +IVI GP+ GK AL
Sbjct: 1 MMKPKVIVIVGPTASGKTAL 20
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 28.8 bits (65), Expect = 2.8
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I V+ G SGVGK LI L
Sbjct: 166 ITVLLGQSGVGKSTLINAL 184
>gnl|CDD|131948 TIGR02902, spore_lonB, ATP-dependent protease LonB. Members of
this protein are LonB, a paralog of the ATP-dependent
protease La (LonA, TIGR00763). LonB proteins are found
strictly, and almost universally, in endospore-forming
bacteria. This protease was shown, in Bacillus subtilis,
to be expressed specifically in the forespore, during
sporulation, under control of sigma(F). The lonB gene,
despite location immediately upstream of lonA, was shown
to be monocistronic. LonB appears able to act on
sigma(H) for post-translation control, but lonB mutation
did not produce an obvious sporulation defect under the
conditions tested. Note that additional paralogs of LonA
and LonB occur in the Clostridium lineage and this model
selects only one per species as the protein that
corresponds to LonB in B. subtilis [Protein fate,
Degradation of proteins, peptides, and glycopeptides,
Cellular processes, Sporulation and germination].
Length = 531
Score = 29.0 bits (65), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPG 131
PNP ++I GP GVGK A +R L + P + G
Sbjct: 84 PNPQHVIIYGPPGVGKTA------AARLVLEEAKKNPASPFKEG 121
>gnl|CDD|235878 PRK06851, PRK06851, hypothetical protein; Provisional.
Length = 367
Score = 28.8 bits (65), Expect = 3.0
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I ++ G G GK L+KK+
Sbjct: 32 IFILKGGPGTGKSTLMKKI 50
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 28.6 bits (64), Expect = 3.6
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 162 YGDYKGIPKKQIREYMAKGYDIILRVDIQ 190
Y + +++ A YDII++ Q
Sbjct: 20 YPTKPERSLENLKQLYASQYDIIIKTPEQ 48
>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family are
found in a variety of single stranded RNA viruses.
Length = 105
Score = 27.2 bits (61), Expect = 4.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 93 IVISGPSGVGKDALIKKL 110
I + GP G GK L K L
Sbjct: 1 IWLYGPPGCGKSTLAKYL 18
>gnl|CDD|181628 PRK09054, PRK09054, phosphogluconate dehydratase; Validated.
Length = 603
Score = 28.6 bits (65), Expect = 4.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 218 ERLVERKTESREELLVRIATAREEIKH 244
ER++ER +R L RI A + H
Sbjct: 10 ERIIERSRATRAAYLARIEAAASKGPH 36
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 27.8 bits (63), Expect = 4.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 92 IIVISGPSGVGKDALIKKL 110
II I GP+G GK + K L
Sbjct: 1 IIAIDGPAGSGKSTVAKLL 19
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known as
thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de novo
or salvage biosynthesis of thymidine triphosphate (TTP).
Length = 200
Score = 28.0 bits (63), Expect = 4.5
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 91 LIIVISGPSGVGKDALIKKLRE 112
+ IV G G GK LI+ L E
Sbjct: 1 MFIVFEGIDGAGKTTLIELLAE 22
>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.
Length = 345
Score = 28.3 bits (64), Expect = 4.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKLRE 112
P PL+ V+ G +G GK L++ L
Sbjct: 138 PAQFPLV-VLGGNTGSGKTELLQALAN 163
>gnl|CDD|222163 pfam13479, AAA_24, AAA domain. This AAA domain is found in a wide
variety of presumed phage proteins.
Length = 201
Score = 27.6 bits (62), Expect = 5.3
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRES 113
+ ++I GP G+GK +L K L
Sbjct: 1 TKNIKVLIYGPPGIGKTSLAKTLPPK 26
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating
citrate/malate metabolism [Signal transduction
mechanisms].
Length = 537
Score = 28.4 bits (64), Expect = 5.4
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 182 DIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE 241
IL V TLR L A+ S ++E +E K + RI E
Sbjct: 30 TGILFVQTS--DTLRDQLEHKALSTARTVASNPEVIE-ALENKDQEA-----RIQAIAEA 81
Query: 242 IKHVKNFDYVVV 253
I+ + + D++VV
Sbjct: 82 IRSITDADFIVV 93
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 27.6 bits (62), Expect = 5.5
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 20/119 (16%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVV--TATSRPMRPG-----EENGKDY 138
P P+ +++ G G GK L + L E V R P + + KD
Sbjct: 8 PQERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTYHPDYDELQKADPKDA 67
Query: 139 YFVSKEEFLTMIDK----------NELLEYALVYGDYKGIPKKQIREYMAKGYDIILRV 187
+++ + ++K N +LE L D +K R+ A GY++ + V
Sbjct: 68 SELTQPDASRWVEKLIDYAIERGYNIILEGTLRSPDV---ARKLARKLKAAGYEVEVYV 123
>gnl|CDD|215451 PLN02840, PLN02840, tRNA dimethylallyltransferase.
Length = 421
Score = 28.2 bits (63), Expect = 6.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 92 IIVISGPSGVGKDAL 106
+IVISGP+G GK L
Sbjct: 23 VIVISGPTGAGKSRL 37
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 27.6 bits (62), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 91 LIIVISGPSGVGKDALIKKL-RESRDSLRFVV 121
L I + GP G GK ALI+K R +D + V
Sbjct: 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAV 45
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.9 bits (63), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 94 VISGPSGVGKDALIKKL 110
V++G SGVGK L+ L
Sbjct: 168 VLAGQSGVGKSTLLNAL 184
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 27.7 bits (62), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 79 FDSNPVCPPPNPLIIVISGPSGVGKDALIKKL 110
FD CP L V+ GPSG GK +L++ L
Sbjct: 19 FDITLDCPQGETL--VLLGPSGAGKSSLLRVL 48
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 27.6 bits (62), Expect = 6.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 92 IIVISGPSGVGKDALIKKLRE 112
+IV+ G G GK L K+L E
Sbjct: 1 VIVVEGNIGAGKSTLAKELAE 21
>gnl|CDD|179793 PRK04220, PRK04220, 2-phosphoglycerate kinase; Provisional.
Length = 301
Score = 28.0 bits (63), Expect = 6.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 90 PLIIVISGPSGVGK 103
P+II+I G SGVG
Sbjct: 92 PIIILIGGASGVGT 105
>gnl|CDD|236404 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 28.3 bits (64), Expect = 6.5
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 208 LMAESETALVERLVERKTESREELLVRIATAREEIK---HVK 246
L+AE E ALV+ L+ R T L V +A+ +EI+ HVK
Sbjct: 1095 LIAEYE-ALVDELLARLTADNLALAVELASLPDEIRGYGHVK 1135
>gnl|CDD|224345 COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and
metabolism].
Length = 216
Score = 27.7 bits (62), Expect = 7.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 92 IIVISGPSGVGKDALIKKLRE 112
+IVI G G GK L + L E
Sbjct: 6 VIVIEGMIGAGKSTLAQALAE 26
>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain. This
domain is found in HypB, a hydrogenase expression /
formation protein, and UreG a urease accessory protein.
Both these proteins contain a P-loop nucleotide binding
motif. HypB has GTPase activity and is a guanine
nucleotide binding protein. It is not known whether UreG
binds GTP or some other nucleotide. Both enzymes are
involved in nickel binding. HypB can store nickel and is
required for nickel dependent hydrogenase expression.
UreG is required for functional incorporation of the
urease nickel metallocenter. GTP hydrolysis may required
by these proteins for nickel incorporation into other
nickel proteins. This family of domains also contains
P47K, a Pseudomonas chlororaphis protein needed for
nitrile hydratase expression, and the cobW gene product,
which may be involved in cobalamin biosynthesis in
Pseudomonas denitrificans.
Length = 178
Score = 27.2 bits (61), Expect = 7.0
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 91 LIIVISGPSGVGKDALIKK-LRESRDSLRFVV 121
+ V++G G GK L++ L ++R+ L+ V
Sbjct: 1 PVTVLTGFLGSGKTTLLEHLLEKNREGLKIAV 32
>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function
prediction only].
Length = 323
Score = 27.6 bits (62), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVV 121
+ VI+G G GK L+ L +RD + V
Sbjct: 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAV 32
>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 27.6 bits (62), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 89 NPLIIVISGPSGVGKDAL 106
P +IVI+GP+ GK AL
Sbjct: 2 KPKLIVIAGPTASGKTAL 19
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 27.3 bits (61), Expect = 7.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 92 IIVISGPSGVGKDALIKKL 110
++ I+GPSG GK KKL
Sbjct: 1 VVGIAGPSGSGKTTFAKKL 19
>gnl|CDD|222194 pfam13521, AAA_28, AAA domain.
Length = 162
Score = 27.1 bits (61), Expect = 7.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 93 IVISGPSGVGKDALIKKLRE 112
IVI+G GK L++ L
Sbjct: 2 IVITGGPSTGKTTLLEALAA 21
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This
enzyme uses ATP in its reaction.
Length = 179
Score = 27.3 bits (61), Expect = 7.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 217 VERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLD 260
VERL++R SRE++ IA + + D V+ N G +
Sbjct: 136 VERLMQRDGLSREQVQAIIAAQASREERLALADDVLDNDSGLAE 179
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 27.4 bits (61), Expect = 7.7
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP 127
P+ +++ G +G GK +LI L + V +
Sbjct: 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDI 76
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 27.8 bits (62), Expect = 7.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 158 YALVYGDYKGIPKKQIREYMAKGYDIILRVDIQG 191
A V+ D I +++ RE+ G DI+L++D+ G
Sbjct: 346 SAEVWNDLWPIERRRQREFFCFGMDILLKLDLDG 379
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 26.6 bits (59), Expect = 8.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I+++ GP GK LI+KL
Sbjct: 2 IVLVVGPKDSGKTTLIRKL 20
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 217
Score = 27.0 bits (60), Expect = 9.6
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 91 LIIVISGPSGVGKDALIKKLRE 112
+II I GPSG GK + K + E
Sbjct: 3 MIIAIDGPSGAGKSTVAKAVAE 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.368
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,420,304
Number of extensions: 1422181
Number of successful extensions: 2406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2383
Number of HSP's successfully gapped: 136
Length of query: 284
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 188
Effective length of database: 6,679,618
Effective search space: 1255768184
Effective search space used: 1255768184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.6 bits)