RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023332
(284 letters)
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 231 bits (591), Expect = 1e-76
Identities = 68/196 (34%), Positives = 117/196 (59%), Gaps = 4/196 (2%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
L+IV+SGPSGVGK + + + + ++ + ++ T+R R GE++G DYYF S+E F
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQ 67
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
I ++LEYA G+Y G P + + E +A G DI L +++QGA +R+ + + +F+FL
Sbjct: 68 AIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPE-GIFIFL 126
Query: 209 MAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVES 268
+ L R++ R TES E + R+ TA++EI+ + ++DY VVN + AV+ ++
Sbjct: 127 TPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDV--VANAVQKIKG 184
Query: 269 IIDAEKAKVQQRSAVI 284
I++ E K ++
Sbjct: 185 IVETEHLKTERVIHRY 200
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 231 bits (591), Expect = 1e-76
Identities = 65/194 (33%), Positives = 113/194 (58%), Gaps = 3/194 (1%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
+ +IS PSG GK +L++ L ++ ++ ++ T+RP RPG++ G DY+F+ + F M+
Sbjct: 8 NLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMV 67
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMA 210
+ LE+A +Y + G K + + G D++L +D QGA+ +R + A+ +F++
Sbjct: 68 KEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPP-ALSIFILP 126
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESII 270
S AL ERL++R+ + + R+A AREE+ H K FDY+VVN D AV+ + II
Sbjct: 127 PSIEALRERLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDN--FDQAVQNLIHII 184
Query: 271 DAEKAKVQQRSAVI 284
AE+ + + +
Sbjct: 185 SAERLQRDVQEKKL 198
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 230 bits (590), Expect = 1e-76
Identities = 72/208 (34%), Positives = 114/208 (54%), Gaps = 8/208 (3%)
Query: 74 SLGHAFDSNPVCPPPNP---LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRP 130
S+G D+ P ++V+SGPS VGK +++ LRE +L F V+AT+R RP
Sbjct: 1 SVGEGPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRP 60
Query: 131 GEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDY--KGIPKKQIREYMAKGYDIILRVD 188
GE +G DY+F+ F +ID+ ELLE+A ++G G + +R A G +++ VD
Sbjct: 61 GEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVD 120
Query: 189 IQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNF 248
+ GA+ +++ + + AV VFL S L RL+ R TE+ + + R+ TAR E+ +F
Sbjct: 121 LAGARAIKKTMPE-AVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179
Query: 249 DYVVVNAEGKLDVAVKLVESIIDAEKAK 276
D VVVN L+ A + S++
Sbjct: 180 DKVVVNRR--LESACAELVSLLVGTAPG 205
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 231 bits (592), Expect = 1e-76
Identities = 66/195 (33%), Positives = 114/195 (58%), Gaps = 3/195 (1%)
Query: 91 LIIVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
+I+V+S PSG GK + KL E ++++ V+ T+R R GE+ GKDYYFV +EEFL +
Sbjct: 28 VILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRL 87
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
E++E+A V+G++ G+P+K + + + KG +L +D QGA ++ + V +F+M
Sbjct: 88 CSNGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIM 147
Query: 210 AESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESI 269
S L RL R+ + E + R+ A EI H + +DYV+VN + ++ + +I
Sbjct: 148 PPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNED--IEETADRISNI 205
Query: 270 IDAEKAKVQQRSAVI 284
+ AE+ K ++ +
Sbjct: 206 LRAEQMKTCRQVGLR 220
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 230 bits (590), Expect = 1e-76
Identities = 73/196 (37%), Positives = 126/196 (64%), Gaps = 4/196 (2%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDS-LRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
L+IV+SGPSGVGK + K++ E + ++ ++ T+R MR GE +G DY+F +++ F
Sbjct: 6 GLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEA 65
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
+I ++ +EYA G+Y G P + +++ M +G+D+ L ++++GA+ +R+ D A+F+FL
Sbjct: 66 LIKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPD-ALFIFL 124
Query: 209 MAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVES 268
S L ERLV R TES E++ RI AR+E++ + +DYVVVN E +++A ++
Sbjct: 125 APPSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDE--VELAKNRIQC 182
Query: 269 IIDAEKAKVQQRSAVI 284
I++AE K ++ A
Sbjct: 183 IVEAEHLKRERVEAKY 198
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 225 bits (575), Expect = 2e-74
Identities = 69/194 (35%), Positives = 108/194 (55%), Gaps = 7/194 (3%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSL-RFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
P +V+SGPSG GK L+KKL + S+ F V+ T+R RPGEE+GKDYYFV++E
Sbjct: 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQR 63
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
I + +E+A G+ G K+ +R A +L VD+QG +++++ +++F+
Sbjct: 64 DIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLC-PIYIFV 122
Query: 209 MAESETALVERLVERKTESREELLVRIATAREEIKHVK---NFDYVVVNAEGKLDVAVKL 265
S L +RL R TE+ E L R+A AR +++ K FD V++N + LD A
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDD--LDKAYAT 180
Query: 266 VESIIDAEKAKVQQ 279
++ + E K Q
Sbjct: 181 LKQALSEEIKKAQG 194
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 224 bits (573), Expect = 3e-74
Identities = 74/185 (40%), Positives = 109/185 (58%), Gaps = 5/185 (2%)
Query: 93 IVISGPSGVGKDALIKKLRESR-DSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
IVISGPSG GK L+KKL DS F V++T+R R GE NGKDY FVS +EF +MI
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIK 63
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
NE +E+A G+Y G +++ G IL +D+QG ++++ + +A F+F+
Sbjct: 64 NNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPP 123
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVK--NFDYVVVNAEGKLDVAVKLVESI 269
S L +RL R TE+ E + R++ A+ E+ + + D V+VN + LD A K ++
Sbjct: 124 SVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDD--LDKAYKELKDF 181
Query: 270 IDAEK 274
I AEK
Sbjct: 182 IFAEK 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 225 bits (575), Expect = 5e-74
Identities = 66/196 (33%), Positives = 116/196 (59%), Gaps = 5/196 (2%)
Query: 91 LIIVISGPSGVGKDALIKKLRES--RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
+ ++S PSG GK +LI+ L ++ + V+ T+R RPGE +G+ Y+FV+ +EF
Sbjct: 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 76
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFL 208
MI ++ LE+A V+G+Y G ++ I + +A G D+ L +D QGAQ +R+ + A +F+
Sbjct: 77 MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPH-ARSIFI 135
Query: 209 MAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVES 268
+ S+ L RL R +S E + R+A A E+ H +DY++VN + D A+ +++
Sbjct: 136 LPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDD--FDTALTDLKT 193
Query: 269 IIDAEKAKVQQRSAVI 284
II AE+ ++ ++
Sbjct: 194 IIRAERLRMSRQKQRH 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 218 bits (559), Expect = 6e-72
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 6/193 (3%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESR-DSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLT 148
+V+ GPSGVGK LIKK+ RF ++ T+R R E NG DYYFV K++F
Sbjct: 12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71
Query: 149 MIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRR-VLGDSAVFVF 207
+ + + LE+ ++ G K + + +G + ++I G + L+ +++F
Sbjct: 72 KLKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIF 131
Query: 208 LMAESETALVERLVERKTESREELLVRIATAREEIKHVK--NFDYVVVNAEGKLDVAVKL 265
+ S L+ RL R TE EE+ R+ E+ F+Y +VN + L
Sbjct: 132 VKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDD--LARTYAE 189
Query: 266 VESIIDAEKAKVQ 278
+ + +++
Sbjct: 190 LREYLLGSYPQLR 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 218 bits (558), Expect = 2e-71
Identities = 52/197 (26%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESR-DSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
N +VI GPSGVGK LIKKL + F V+ T+R R E+ G DYYF+ K F
Sbjct: 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFE 81
Query: 148 TMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRR-VLGDSAVFV 206
+ + LEY ++ G K + + + + ++I G + L++ +A+++
Sbjct: 82 DKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYI 141
Query: 207 FLMAESETALVERLVERKTESREELLVRIATAREEIK--HVKNFDYVVVNAEGKLDVAVK 264
F+ S L+ RL+ R TE++E++ R+ E+ ++ NF+ ++N + L + +
Sbjct: 142 FIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDD--LTLTYQ 199
Query: 265 LVESIIDAEKAKVQQRS 281
+++ + + +
Sbjct: 200 QLKNYLLNSYIHLNNHT 216
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 191 bits (487), Expect = 4e-61
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 14/203 (6%)
Query: 77 HAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENG 135
H +V+ G SGVG+ + L + + V T+RP R EE+G
Sbjct: 6 HHSSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDG 65
Query: 136 KDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTL 195
K+Y+F+S EE I NE LE+ G+ G + + + + IL ++ Q + +
Sbjct: 66 KEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIV 125
Query: 196 RRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNA 255
R VF+ + E L + + +S ++ FD +VN
Sbjct: 126 RTAELS-PFIVFIAPTDQGTQTEALQQLQKDS----------EAIRSQYAHYFDLSLVNN 174
Query: 256 EGKLDVAVKLVESIIDAEKAKVQ 278
+D +K ++ D + Q
Sbjct: 175 G--VDETLKKLQEAFDQACSSPQ 195
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 186 bits (475), Expect = 1e-59
Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 13/181 (7%)
Query: 93 IVISGPSGVGKDALIKKLRES-RDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+V+ G GVG+ + L D + + T+RP + EENGK+YYFVS ++ + I
Sbjct: 8 LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDIS 67
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
NE LEY G + IR+ +G IL V+ Q + LR VF+ A
Sbjct: 68 NNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFA-PFVVFIAAP 126
Query: 212 SETALVERLVERKTESREELLVRIATARE-EIKHVKNFDYVVVNAEGKLDVAVKLVESII 270
+ + E L + + + FD ++N E +D ++ +E +
Sbjct: 127 T--------ITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNE--IDETIRHLEEAV 176
Query: 271 D 271
+
Sbjct: 177 E 177
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 166 bits (422), Expect = 3e-50
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 10/195 (5%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVS-K 143
++I GP KD + L E D V T+RP R E +G+DY+FVS +
Sbjct: 96 SINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSR 152
Query: 144 EEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSA 203
E+ I + +E + G +RE KG IL V + L+
Sbjct: 153 EQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLY-P 211
Query: 204 VFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAV 263
V VF+ +S +++E E ++ R +E F VV ++
Sbjct: 212 VAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEFGE--YFTGVVQGDT--IEEIY 267
Query: 264 KLVESIIDAEKAKVQ 278
V+S+I ++
Sbjct: 268 SKVKSMIWSQSGPTI 282
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 165 bits (419), Expect = 1e-49
Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 12/196 (6%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVS-K 143
I+I GP+ KD L E D V T+RP R E +G+DY+FVS +
Sbjct: 101 EVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSR 157
Query: 144 EEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSA 203
E+ I ++ +E G + +RE +G IL V + L+
Sbjct: 158 EKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLH-P 216
Query: 204 VFVFLMAESETALVERLVERKTESREELLVRIATA-REEIKHVKNFDYVVVNAEGKLDVA 262
+ +F+ S ++E K + E+ A + E + + F +V +
Sbjct: 217 IAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEEI 271
Query: 263 VKLVESIIDAEKAKVQ 278
V+ +I+
Sbjct: 272 YHKVKRVIEDLSGPYI 287
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 106 bits (264), Expect = 7e-26
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 14/197 (7%)
Query: 85 CPPPNPLIIVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVS- 142
P+II+ G KD L E D V T+RP R E +G+DY+FVS
Sbjct: 528 VHYARPIIIL-----GPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSS 582
Query: 143 KEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDS 202
+E+ I ++ +E G + +RE +G IL V + L+
Sbjct: 583 REKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAA-HLH 641
Query: 203 AVFVFLMAESETALVERLVERKTESREELLVRIATARE-EIKHVKNFDYVVVNAEGKLDV 261
+ +F+ S ++E K + E+ A + E + + F +V +
Sbjct: 642 PIAIFIRPRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTECFSAIVEGDS--FEE 696
Query: 262 AVKLVESIIDAEKAKVQ 278
V+ +I+
Sbjct: 697 IYHKVKRVIEDLSGPYI 713
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 68.3 bits (166), Expect = 2e-13
Identities = 39/229 (17%), Positives = 76/229 (33%), Gaps = 18/229 (7%)
Query: 51 NLRMNHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVG---KDALI 107
N+R+ H Q A K + P P+ +V+ GPS G D +
Sbjct: 103 NMRLQHEQRAKEFKLHSKEKRMPFFKKTEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQ 162
Query: 108 KKLRESRDSLRFVVT-ATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYK 166
K L RF + +R ++K L K+ ++E +
Sbjct: 163 KALF-DFLKHRFEGRISITRVTAD--------ISLAKRSVLNNPSKHAIIERSNTRSSLA 213
Query: 167 --GIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERK 224
++I E ++L D + + V++ S L + R
Sbjct: 214 EVQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRG 273
Query: 225 TESREELLVRIATA-REEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDA 272
+ L V++ A + + FD ++ + L+ A + + ++A
Sbjct: 274 KSQAKHLNVQMVAADKLAQCPPELFDVILDENQ--LEDACEHLADYLEA 320
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 8e-10
Identities = 44/306 (14%), Positives = 93/306 (30%), Gaps = 86/306 (28%)
Query: 47 FFSSNLRMNHT------QTAAVKKAELLRSLEASLGHAFDSNPVCPP------------- 87
F LR+N+ +T + + + R ++ N V
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 88 -------PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRP-----MRPGEENG 135
P ++I G G GK + D + N
Sbjct: 142 QALLELRPAK-NVLIDGVLGSGKTWVAL------DVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 136 KDYYFVSKEEFLTMIDKN--ELLEYALVYGDYKGIPKKQIREYMA-KGYD---IILRVDI 189
+ ++ L ID N +++ + ++R + K Y+ ++L ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NV 253
Query: 190 QGAQTLR------RVL---GDSAVFVFLMA------------------ESETALVERLVE 222
Q A+ ++L V FL A E ++ L++ L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 223 RKTESREE------LLVRI--ATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEK 274
R + E + I + R+ + N+ +V + KL ++ES ++ +
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---KLT---TIIESSLNVLE 367
Query: 275 AKVQQR 280
++
Sbjct: 368 PAEYRK 373
Score = 41.8 bits (97), Expect = 2e-04
Identities = 46/335 (13%), Positives = 85/335 (25%), Gaps = 119/335 (35%)
Query: 6 CTSLSLS-SISKTNSLFAFQNNPIKVKQPQRRFHHSLSLTPHFFSSNLRMNHTQTAAVKK 64
C L + T+ L A I + + L +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS--LLLKYLDC---------R 314
Query: 65 AELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPS------------GVGKDALIKKLRE 112
+ L E + P + I S V D L +
Sbjct: 315 PQDLPR-EVLTTN------------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 113 SRDSLRFVVTATSRPMRPGEENGKDYY-----F---------------VSKEEFLTMIDK 152
S + L P E + + F + M+
Sbjct: 362 SLNVLE-----------PAEY--RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 153 NELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQ--GAQTLRRVL----------- 199
N+L +Y+LV +KQ +E I L + ++ L R +
Sbjct: 409 NKLHKYSLV--------EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 200 --------GDSAVFVFL--------MAESETALVERL------VERKTESREELLVRIAT 237
D + + E L + +E+K +
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
Query: 238 AREEIKHVKNF-DYVVVNAEGKLDVAVKLVESIID 271
++ +K + Y+ N + K + +LV +I+D
Sbjct: 520 ILNTLQQLKFYKPYICDN-DPKYE---RLVNAILD 550
Score = 38.3 bits (88), Expect = 0.003
Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 44/175 (25%)
Query: 136 KDYYFVSKEEFLTMIDKNELLEY---ALVYGDYKGI---PKKQIREYMAKGYDIILRVDI 189
KD V ++ F+ D ++ + L + I + +L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWTLLS--- 73
Query: 190 QGAQTLRRVLGDS--AVFVFLMAE-----SETALVERLVERKTE--------------SR 228
+ + +++ + + + FLM+ + +++ R+ + + SR
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 229 EELLVRIATAREEIKHVKNFDYVVVN---AEGKLDVAVKLVESIIDAEKAKVQQR 280
+ +++ A E++ K V+++ GK VA+ + S KVQ +
Sbjct: 134 LQPYLKLRQALLELRPAK---NVLIDGVLGSGKTWVALDVCLS------YKVQCK 179
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 49.4 bits (117), Expect = 5e-07
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 14/156 (8%)
Query: 124 TSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDI 183
+R EE I K+E + I I++ + +
Sbjct: 244 VAREKLAREEPDI-----------YQIAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHA 292
Query: 184 ILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATARE-EI 242
+L V L + VFL +S+ + + ESR+ + +
Sbjct: 293 LLDVTPNAVDRLNYA-QWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRK 351
Query: 243 KHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278
+ F + D ++ I ++ ++
Sbjct: 352 NNHHLFTTTINL-NSMNDGWYGALKEAIQQQQNQLV 386
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 49.1 bits (116), Expect = 7e-07
Identities = 25/187 (13%), Positives = 53/187 (28%), Gaps = 36/187 (19%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+ I GP D +KL RE D + R + + +
Sbjct: 227 VTIFGPI---ADVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGIIRLHT------ 273
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
I++ + + +L V L + VFL +
Sbjct: 274 ---------------------IKQIIDQDKHALLDVTPNAVDRLNYA-QWYPIVVFLNPD 311
Query: 212 SETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIID 271
S+ + + ESR+ + + K+ + +N D ++ I
Sbjct: 312 SKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQ 371
Query: 272 AEKAKVQ 278
++ ++
Sbjct: 372 QQQNQLV 378
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 48.3 bits (114), Expect = 8e-07
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 1/116 (0%)
Query: 163 GDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVE 222
K I +R K +L V + L V + VF + ES AL
Sbjct: 181 SPSKIIKLDTVRVIAEKDKHALLDVTPSAIERLNYV-QYYPIVVFFIPESRPALKALRQW 239
Query: 223 RKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKLVESIIDAEKAKVQ 278
SR A A++ KH + + G D + +++II ++ +
Sbjct: 240 LAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPI 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 42.6 bits (100), Expect = 4e-05
Identities = 28/193 (14%), Positives = 59/193 (30%), Gaps = 28/193 (14%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+ +I+GP+GVGK K+L L + G + S E
Sbjct: 4 LYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWK 60
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL------RVDIQGAQTLRRVLGDSAVF 205
+ + ++ D++L AQT++ + D +
Sbjct: 61 --NITD--------------LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104
Query: 206 VFLMAESETALVERLVER-KTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVK 264
++ + L+ R R K E E + + E + Y + +
Sbjct: 105 FIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDE--RYFYNTSHLQPTNLND 162
Query: 265 LVESIIDAEKAKV 277
+V+++ +
Sbjct: 163 IVKNLKTNPRFIF 175
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 41.9 bits (98), Expect = 6e-05
Identities = 32/211 (15%), Positives = 70/211 (33%), Gaps = 32/211 (15%)
Query: 86 PPPNP--LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSK 143
P L+++ SG GKD + + L+ + V S P+ K+ Y
Sbjct: 5 PLGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL-------KEQYAQ-- 55
Query: 144 EEFLTMIDKNELLEYALVYGDYKGIPKKQ----IREYMAKGYDIILRVDIQGAQTLRRVL 199
++ LL+ YK +K E R ++G ++
Sbjct: 56 ---EHGLNFQRLLD----TSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLV 108
Query: 200 GD---SAVFVFLMAESETALVERLVERKTESREELLVRIATARE------EIKHVKNFDY 250
D + + V +SR++ + + + +FD+
Sbjct: 109 SDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFTPGVDDAESECGLDNFGDFDW 168
Query: 251 VVVNAEGKLDVAVKLVESIIDAEKAKVQQRS 281
V+ N G + +E++I+ +++++
Sbjct: 169 VIEN-HGVEQRLEEQLENLIEFIRSRLKLHH 198
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 39.9 bits (93), Expect = 3e-04
Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 39/170 (22%)
Query: 90 PLIIVISGPSGVGKDALIKKLRE-------SRDSLRFVVTATSRPMRPGEENGKDYYFVS 142
P +I+++G GK L + L S+D+ + M G +
Sbjct: 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK-------EVMFDGLGWSDREWS-- 55
Query: 143 KEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL------RVDIQGAQTLR 196
+ ++Y + G +I+ +D + Q L
Sbjct: 56 --------RRVGATAIMMLY--------HTAATILQSGQSLIMESNFRVDLDTERMQNLH 99
Query: 197 RVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVK 246
+ + + + +A + LVER++ R + + +++ V+
Sbjct: 100 TIAPFTPIQIRCVASGDV-LVERILSRIAQGARHPGHCDDRSPADLELVR 148
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Length = 203
Score = 36.8 bits (86), Expect = 0.003
Identities = 41/215 (19%), Positives = 71/215 (33%), Gaps = 44/215 (20%)
Query: 81 SNPVCPPPNPLIIVISGPSGVGK----DALIKKLRESR----DSLRFVVTATSRPMRPGE 132
S P P +I + G G GK + L+K D LR R G
Sbjct: 6 SQPAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQG------RAGS 59
Query: 133 ENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL-----RV 187
+ G+ I + +++ + + + I + + L R
Sbjct: 60 QYGE--------LIKNCIKEGQIVPQEITLA----LLRNAISDNVKANKHKFLIDGFPRK 107
Query: 188 DIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTES------REELLVRIATAREE 241
Q A + R + +S +F + ++ERL+ER S E + R T +E
Sbjct: 108 MDQ-AISFERDIVESKFILFFDCPEDI-MLERLLERGKTSGRSDDNIESIKKRFNTFKET 165
Query: 242 IKHVKNF-----DYVVVNAEGKLDVAVKLVESIID 271
V + V V + ++ K V+ I
Sbjct: 166 SMPVIEYFETKSKVVRVRCDRSVEDVYKDVQDAIR 200
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 36.6 bits (84), Expect = 0.004
Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 15/193 (7%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM-I 150
I +++G GVGK ++ K++E D+ + K Y ++E + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLG--DSAVFVFL 208
+K + L+ G + + +I V+ + +V L
Sbjct: 63 EKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFLL 122
Query: 209 MAESETALVERLV----ERKTESREELLVRIATAREEIK-----HVKNFDYVVVNAEGKL 259
A+ + L + R S E +++ + V+VN EG
Sbjct: 123 EADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDP 182
Query: 260 DVAVKLVESIIDA 272
+A II +
Sbjct: 183 SIA---ANEIIRS 192
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 35.9 bits (82), Expect = 0.006
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 31/146 (21%)
Query: 92 IIVISGPSGVGKDALIKKLRE---------SRDSLRFVVTATSRPMRPGEENGKDYYFVS 142
+I+++G S GK +++ L+ DSL + + G E D
Sbjct: 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64
Query: 143 KEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVL--- 199
EF LE A + + G II+ G +
Sbjct: 65 GPEF-------RALEGAW---------AEGVVAMARAGARIIIDDVFLGGAAAQERWRSF 108
Query: 200 --GDSAVFVFLMAESETALVERLVER 223
++V + + R R
Sbjct: 109 VGDLDVLWVGVRCDGAV-AEGRETAR 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 35.8 bits (83), Expect = 0.007
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 21/184 (11%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
+I++ GP K + KL + + ++ + +G + F L D
Sbjct: 3 LIILEGPDCCFKSTVAAKLSK-ELKYPIIKGSSFELAK----SGNEKLF-EHFNKLADED 56
Query: 152 KNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLMAE 211
+ + + + K Y I+ + + + + A V+L A+
Sbjct: 57 NVIIDRF---------VYSNLVYAKKFKDYSILTE---RQLRFIEDKIKAKAKVVYLHAD 104
Query: 212 SETALVERLVERKTES-REELLVRIATAREEIKHVKNFDYVVVNA-EGKLDVAVKLVESI 269
+ +RL R E + + I E+ + + D K + +
Sbjct: 105 PSV-IKKRLRVRGDEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQWSSDEIAKDIIFL 163
Query: 270 IDAE 273
++ E
Sbjct: 164 VELE 167
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 34.9 bits (80), Expect = 0.014
Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 33/158 (20%)
Query: 87 PPNPLIIVISGPSGVGK----DALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVS 142
P II I+GP GVGK L ++L S + R + PG
Sbjct: 2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGD----PQE 57
Query: 143 KEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVL--- 199
++ ++ + L+YA +I+ V I RR++
Sbjct: 58 HPMWIPLML--DALQYASREA----------------AGPLIVPVSISDTARHRRLMSGL 99
Query: 200 ---GDSAVFVFLMAESETALVERLVERKTESREELLVR 234
G S L+A ++ERL V
Sbjct: 100 KDRGLSVHHFTLIA-PLNVVLERLRRDGQPQVNVGTVE 136
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.017
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 63 KKAELLRSLEASLG-HAFDSNP 83
K+A L+ L+ASL +A DS P
Sbjct: 19 KQA--LKKLQASLKLYADDSAP 38
Score = 27.2 bits (59), Expect = 3.7
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 103 KDALIKKLRESRDSLRFVVTATSRP 127
K A +KKL ++ SL+ + S P
Sbjct: 19 KQA-LKKL-QA--SLK-LYADDSAP 38
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 34.3 bits (78), Expect = 0.024
Identities = 29/203 (14%), Positives = 60/203 (29%), Gaps = 41/203 (20%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF--LTM 149
++V++G GVG + ++ S E ++ +++ +
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64
Query: 150 IDKNELLEYAL----------------------VYGDYKGIPKKQIREYMAKGYDIILRV 187
+ + + A G G+P + E D+I+ V
Sbjct: 65 ETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELN---PDLIIVV 121
Query: 188 DIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKN 247
+ G + L R + D R ++ + + + A
Sbjct: 122 ETTGDEILMRRMSDET-------------RVRDLDTASTIEQHQFMNRCAAMSYGVLTGA 168
Query: 248 FDYVVVNAEGKLDVAV-KLVESI 269
+V N G LD AV +L +
Sbjct: 169 TVKIVQNRNGLLDQAVEELTNVL 191
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET:
AMP; 2.3A {Homo sapiens}
Length = 199
Score = 34.0 bits (79), Expect = 0.028
Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 192 AQTLRRVLGDSAVFVFLMAESETALVERLVER-KTESR-----EELLVRIATAREEIKHV 245
+ R +GD + + + ++T + RL++ ++ + + R+ V
Sbjct: 106 GEEFGRRIGDPQLVICMDCSADT-MTNRLLQMSRSSLPVDDTTKTIAKRLEAYYRASIPV 164
Query: 246 KNF-----DYVVVNAEGKLDVAVKLVESIIDA 272
+ +NAEG + + + ID+
Sbjct: 165 IAYYETKTQLHKINAEGTPEDVFLQLCTAIDS 196
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.039
Identities = 50/316 (15%), Positives = 92/316 (29%), Gaps = 120/316 (37%)
Query: 1 MFRRLCTSLSLSS-------ISKTNSLFAFQNNPIKV--------KQPQRRFHHSLSLTP 45
+ L + S I++T+S +F + K + + ++ SL P
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPP 321
Query: 46 HFFSSNLRMNHTQTA---AVK---KAELLRSLEASLGHAFDSNPVCPPPNPLII------ 93
+L N + ++ + ++ + + N P + I
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT-------NSHLPAGKQVEISLVNGA 374
Query: 94 ---VISGP--SGVGKDALIKKL---------------RESRDSLRF-VVTATSRP----- 127
V+SGP S G + ++K R+ + S RF V + P
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS---PFHSHL 431
Query: 128 MRPGEEN-GKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILR 186
+ P + KD + K + ++ IP + G D+
Sbjct: 432 LVPASDLINKD---LVKNNVS--FNAKDI-----------QIPVYDTFD----GSDL--- 468
Query: 187 VDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESR---EELLVRIATAREEIK 243
RVL S + ER+V+ E AT
Sbjct: 469 ----------RVLSGS-------------ISERIVDCIIRLPVKWETTTQFKAT------ 499
Query: 244 HVKNFDYVVVNAEGKL 259
H+ +F + G L
Sbjct: 500 HILDFGPGGASGLGVL 515
Score = 33.5 bits (76), Expect = 0.088
Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 34/139 (24%)
Query: 8 SLSLSSISKTNSLFA-F--QNNPIK-VKQPQRRFHHSLSLTPHFFSSNLRMNHTQTAAVK 63
+L + L A F Q N ++ + + L + +A
Sbjct: 144 ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI---------KFSAET 194
Query: 64 KAELLRSLEAS---LGHAFD-----SNPVCPPPNP-LIIV-ISGPSGVGKDALIKKLRES 113
+EL+R+ + + NP P L+ + IS P +G L
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP-LIGVIQL------- 246
Query: 114 RDSLRFVVTATSRPMRPGE 132
+VVTA PGE
Sbjct: 247 ---AHYVVTAKLLGFTPGE 262
Score = 32.7 bits (74), Expect = 0.17
Identities = 46/261 (17%), Positives = 77/261 (29%), Gaps = 108/261 (41%)
Query: 38 HHSLS---LTP---HFFSSNLRMNHTQTAAVKKAELLRSL-EASLGHAFDSNPVCPPPNP 90
H SL L P F +S L+ + + L E + G A D P P
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQ-----------EQFNKILPEPTEGFAADDEPTTPAE-- 59
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDY-------YFVSK 143
L+ K L +V S + P + D F +
Sbjct: 60 ---------------LVGKF------LGYV----SSLVEPSKVGQFDQVLNLCLTEF--E 92
Query: 144 EEFLTMIDKNEL--LEYALVYGDYKGIPKKQ--IREYMAKGYDIILRVDIQGAQTLRRVL 199
+L N++ L L+ + + K + I+ Y I +R
Sbjct: 93 NCYLE---GNDIHALAAKLLQENDTTLVKTKELIKNY------------ITARIMAKRPF 137
Query: 200 ---GDSAVF-------VFLMA-------------------ESETALVERLVERKTESREE 230
+SA+F L+A ++ LV L++ S E
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF---SAET 194
Query: 231 L--LVRIATAREEIKHVKNFD 249
L L+R E++ + +
Sbjct: 195 LSELIRTTLDAEKV-FTQGLN 214
Score = 32.3 bits (73), Expect = 0.21
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 50 SNLRM---NHTQTAAVKKAELLRSLEASLGHAFDSNPVCPPPN----PLIIVISG-PSGV 101
SN M N + AA E L+ + +G + + N V +G +
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKR--TGWLVEIVNYNVENQQYVAAGDLRAL 1862
Query: 102 GKDALIKKLRESR----DSLRFVVTATSRPMR 129
D + L + D + + + +
Sbjct: 1863 --DTVTNVLNFIKLQKIDIIELQKSLSLEEVE 1892
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 33.5 bits (76), Expect = 0.040
Identities = 31/196 (15%), Positives = 57/196 (29%), Gaps = 38/196 (19%)
Query: 86 PPPNPLIIVISGPSGVGK----DALIKKLR-ESRDSLRFVVTATSRPMRPGEENGKDYYF 140
+ I V+ G SG GK + +L D M GE
Sbjct: 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEP----LND 59
Query: 141 VSKEEFLTMIDKNELLEYALVYGDYK----GIPKKQIREYMAKGYDIILRVDIQGAQTLR 196
++ +L + N+ KK R+ +
Sbjct: 60 DDRKPWLQAL--NDAAFAMQRTNKVSLIVCSALKKHYRDLL------------------- 98
Query: 197 RVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAE 256
R + F++L + + RL RK + ++ + D +VV+ +
Sbjct: 99 REGNPNLSFIYLKGDFDVIE-SRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDID 157
Query: 257 GKLDVAVKLVESIIDA 272
L+ +V S I+
Sbjct: 158 QPLE---GVVASTIEV 170
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 33.9 bits (77), Expect = 0.041
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFV 120
P ++I G G GK + + ++ + +
Sbjct: 18 TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 50
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 33.3 bits (76), Expect = 0.043
Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 27/191 (14%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMI 150
+I+I+G G GK K L+E V S +R + S E
Sbjct: 2 KVILITGMPGSGKSEFAKLLKE----RGAKVIVMSDVVR--KR-------YSIEAKPGER 48
Query: 151 DKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVD----IQGAQTLRRVLGDSAVFV 206
+ +YGD G+ + E + ++ D + + +R+LGDS V
Sbjct: 49 LMDFAKRLREIYGD--GVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIV 106
Query: 207 FLMAESETALVERLVERK----TESREELLVRIATAREE--IKHVKNFDYVVVNAEGKLD 260
+ + + +R++ER ++ EL+ R + + + DY++ N + +
Sbjct: 107 AVHSPPKI-RYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITN-DSNYE 164
Query: 261 VAVKLVESIID 271
+ E + D
Sbjct: 165 EFKRRCEEVTD 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.5 bits (76), Expect = 0.047
Identities = 28/193 (14%), Positives = 62/193 (32%), Gaps = 27/193 (13%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
I+++SG G GK + + L + + + ++G+ + +L
Sbjct: 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD--LWGYIKHGRI------DPWL 58
Query: 148 TMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLR--RVLGDSAVF 205
+ + + Y +GY +IL + L L +
Sbjct: 59 PQSHQQNRMIMQIAA--------DVAGRYAKEGYFVILD-GVVRPDWLPAFTALARPLHY 109
Query: 206 VFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLDVAVKL 265
+ L + +ER ++R +S + LV + F + L V+ K
Sbjct: 110 IVLRTTAAE-AIERCLDRGGDSLSDPLVVADLHSQ-------FADLGAFEHHVLPVSGKD 161
Query: 266 VESIIDAEKAKVQ 278
+ + + +Q
Sbjct: 162 TDQALQSAINALQ 174
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 33.1 bits (75), Expect = 0.054
Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 38/199 (19%)
Query: 81 SNPVCPPPNPLIIVISGPSGVGK----DALIKKLR-ESRDSLRFVVTATSRPMRPGEE-N 134
S P IV+ G SG GK +A+ + + R M G
Sbjct: 9 SEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLT 68
Query: 135 GKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQT 194
D + +L I + +V K+ R+
Sbjct: 69 DDDRW-----PWLAAIGERLASREPVVVSC--SALKRSYRDK------------------ 103
Query: 195 LRRVLGDSAVFVFLMAESETALVERLVERKTE-SREELLVRIATAREEIKHVKNFDYVVV 253
LR FVFL L ER+ R LL E+ + V V
Sbjct: 104 LRESAPGGLAFVFLHGSESV-LAERMHHRTGHFMPSSLLQTQLETLEDPRG--EVRTVAV 160
Query: 254 NAEGKLDVAVKLVESIIDA 272
+ L ++V +
Sbjct: 161 DVAQPLA---EIVREALAG 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate
kinase); nucleoside monophosphate kinase, NMP kinase;
HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP:
c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Length = 194
Score = 32.9 bits (76), Expect = 0.061
Identities = 33/217 (15%), Positives = 68/217 (31%), Gaps = 61/217 (28%)
Query: 89 NPLIIVISGPSGVGK----DALIKK-----------LRESRDSLRFVVTATSRPMRPGEE 133
P ++ + G G GK +++ LR+ + G +
Sbjct: 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQE--------------QQSGSK 50
Query: 134 NGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL----RVDI 189
+G+ TMI E++ + + K I K + ++ R +
Sbjct: 51 DGE--------MIATMIKNGEIVPSIVTVK----LLKNAIDANQGKNF--LVDGFPRNEE 96
Query: 190 QGAQTLRRVLGDSA--VFVFLMAESETALVERLVERKTES------REELLVRIATAREE 241
+ + D FV E + +RL++R S E + R T +
Sbjct: 97 N-NNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQ 155
Query: 242 IKHVKNF-----DYVVVNAEGKLDVAVKLVESIIDAE 273
K V + ++ A ++ VE++ +
Sbjct: 156 TKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLFKSM 192
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.063
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 17/82 (20%)
Query: 208 LMAESETALVE-------RLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAEGKLD 260
L E E ++ + RL E S+ A++++ + + +++
Sbjct: 80 LTQEPE-SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDL---EEW-N--QRQSEQVE 132
Query: 261 VAVKLVESIIDAEKAKVQQRSA 282
K + A+KA QQ A
Sbjct: 133 ---KNKINNRIADKAFYQQPDA 151
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural
protein structure initiative, midwest center for
structural genomics; HET: MSE; 2.00A {Pseudomonas
aeruginosa PAO1}
Length = 500
Score = 33.8 bits (78), Expect = 0.063
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYY 139
P+II+I+G G GK +K L E D V + RP EE +
Sbjct: 43 PVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSD--EELERPPQ 90
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase,
transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens}
PDB: 1z83_A* 3adk_A
Length = 196
Score = 32.9 bits (76), Expect = 0.075
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 192 AQTLRRVLGDSAVFVFLMAESETALVERLVER-KTESR-----EELLVRIATAREEIKHV 245
+ R +G + +++ A ET + +RL++R +T R E + R+ T + + V
Sbjct: 103 GEEFERRIGQPTLLLYVDAGPET-MTQRLLKRGETSGRVDDNEETIKKRLETYYKATEPV 161
Query: 246 KNF-----DYVVVNAEGKLDVAVKLVESIIDA 272
F VNAEG +D V + +DA
Sbjct: 162 IAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDA 193
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 32.9 bits (74), Expect = 0.091
Identities = 12/79 (15%), Positives = 27/79 (34%), Gaps = 7/79 (8%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
I I G GK + L++ + V +R N + +E +
Sbjct: 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVAR-----WCNVQSTQDEFEELTM 76
Query: 148 TMIDKNELLEYALVYGDYK 166
+ + +L+ ++Y +
Sbjct: 77 SQKNGGNVLQ--MMYEKPE 93
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region,
conformational changes, transferase; 2.10A {Homo
sapiens} SCOP: c.37.1.1
Length = 196
Score = 32.1 bits (74), Expect = 0.13
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 13/95 (13%)
Query: 192 AQTLRRVLGDSAV--FVFLMAESETALVERLVERKTES------REELLVRIATAREEIK 243
Q + + A FV + +ER +ER S RE L RI T + K
Sbjct: 101 LQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTK 160
Query: 244 HVKNF-----DYVVVNAEGKLDVAVKLVESIIDAE 273
+ + ++A +D V I D E
Sbjct: 161 PIIDLYEEMGKVKKIDASKSVDEVFDEVVQIFDKE 195
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 32.0 bits (72), Expect = 0.17
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFV 120
P + I G VGK +K L ++
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 32
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 31.7 bits (72), Expect = 0.19
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 74 SLGHAFDSNPVCPPPN-PLIIVISGPSGVGKDALIKKLRES 113
S H S+ + P + II ISG + GK L K L++
Sbjct: 4 SHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 31.6 bits (71), Expect = 0.20
Identities = 26/161 (16%), Positives = 46/161 (28%), Gaps = 18/161 (11%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESR-----DSLRFVVTATSRPMRPGEENGKD------ 137
LII I G G + KKL E D + + + D
Sbjct: 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNN 72
Query: 138 -YYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLR 196
Y + + + K + + + +RE I + A +
Sbjct: 73 LLYRLGGGRKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEPCIF---VGRAAGYVL 129
Query: 197 RVLGD--SAVFVFLMAESETALVERLVERKTESREELLVRI 235
D + +F+ + V+R++E E RI
Sbjct: 130 DQDEDIERLIRIFVYTDKVKK-VQRVMEVDCIDEERAKRRI 169
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 31.6 bits (71), Expect = 0.22
Identities = 14/75 (18%), Positives = 25/75 (33%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
II+ G G GK ++ + R E +Y + K+E +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 150 IDKNELLEYALVYGD 164
+ + + L GD
Sbjct: 62 GMQFDTAKSILYGGD 76
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 31.2 bits (70), Expect = 0.24
Identities = 31/204 (15%), Positives = 68/204 (33%), Gaps = 34/204 (16%)
Query: 91 LIIVISGPSGVGKDALIKKLRE-------SRDSLRFVVTATSRP---MRPGEENGKDYYF 140
+II I G G + KKL E S++ L V + +E ++ F
Sbjct: 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAF 66
Query: 141 VSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLG 200
+ T I + + IR+ + + + V + L
Sbjct: 67 IPVPAGGTTISLEQDIAIRQF---------NFIRKKANEEKESFVIVGRCAEEILSDN-- 115
Query: 201 DSAVFVFLMAESETALVERLVERKTESREELLVRIATAREE------------IKHVKNF 248
+ + F++ + +T +R++ER+ + L + + + +
Sbjct: 116 PNMISAFILGDKDTK-TKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTY 174
Query: 249 DYVVVNAEGKLDVAVKLVESIIDA 272
D + + +D A ++ ID+
Sbjct: 175 DICIKIGKVDVDTATDMIIKYIDS 198
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 30.9 bits (69), Expect = 0.35
Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 28/199 (14%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFV-VTATSRPMRPGEENGKDYYFVSKEEF 146
P + I+I+G G GK ++ + + D + + V + E E
Sbjct: 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD--------TEL 59
Query: 147 LTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFV 206
T I + + + L + M + ++ + V
Sbjct: 60 DTHIIEEKDEDRLL----------DFMEPIMVSRGNHVV-----DYHSSELFPERWFHMV 104
Query: 207 FLMAESETALVERLVERKTESR--EELLVR--IATAREEIKHVKNFDYVVVNAEGKLDVA 262
++ S L ERL +R+ E + EE + D V+V L+
Sbjct: 105 VVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQM 164
Query: 263 VKLVESIIDAEKAKVQQRS 281
VE I + + +R
Sbjct: 165 AATVEEIRERVEVLKVERG 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.4 bits (68), Expect = 0.38
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 93 IVISGPSGVGKDALIKKL-RESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEE 145
I+I+G GVGK L+KK+ T R + G ++
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKK 56
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 31.0 bits (70), Expect = 0.41
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 90 PLIIVISGPSGVGKDALIKKLRE 112
P +I +SG + GK ++ K+ +
Sbjct: 22 PFLIGVSGGTASGKSSVCAKIVQ 44
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 30.9 bits (69), Expect = 0.44
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 68 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKL---RESRDSLRFV 120
L+ L+ LG+ NP P + G G GK ++KL + + + RFV
Sbjct: 26 LQQLDILLGNWLR-NPGHHYPR---ATLLGRPGTGKTVTLRKLWELYKDKTTARFV 77
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.4 bits (69), Expect = 0.49
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 86 PPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATS-------RPMRPGEENGKDY 138
L++ I G S GK L +L ++ V R R N + +
Sbjct: 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWF 77
Query: 139 YF 140
+
Sbjct: 78 EY 79
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 30.6 bits (69), Expect = 0.52
Identities = 24/197 (12%), Positives = 68/197 (34%), Gaps = 32/197 (16%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFL 147
+ ++I+++G GVGK K L + +N D + +
Sbjct: 2 GDIMLIILTGLPGVGKSTFSKNLAKI-----------------LSKNNIDVIVLGSDLIR 44
Query: 148 TMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIIL------RVDIQGAQTLRRVLGD 201
+ + ++ + K Y +I+ + + +
Sbjct: 45 ESFPVWKEKYEEFIKKST-----YRLIDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNK 99
Query: 202 SAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKHVKNFD--YVVVNAEGKL 259
+ ++L A + + R +ER + E++ ++ +E +D +++++ +
Sbjct: 100 NYAIIYLKASLDVLI-RRNIERGEKIPNEVIKKMYEKFDEPGKKYKWDEPFLIIDTTKDI 158
Query: 260 DVAVKLVESIIDAEKAK 276
D ++ + +I+ K
Sbjct: 159 DFN-EIAKKLIEKSKEI 174
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 30.0 bits (67), Expect = 0.63
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 43/200 (21%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVVT---ATSRPMRPGEENGKDYYFVSKEEFLTM 149
I+++G GVGK L K+L + L+++ A + G + D + ++ +
Sbjct: 14 ILLTGTPGVGKTTLGKELAS-KSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE 72
Query: 150 IDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGDSAVFVFLM 209
+D +V ++ + +LR
Sbjct: 73 LDNQMREGGVIVDYHGCDFFPERWFHIV-----FVLRT---------------------- 105
Query: 210 AESETALVERLVERKTESR-------EELLVRIATAREEIKHVKNFDYVVVNAEGKLDVA 262
L ERL R + E+ + + V K +
Sbjct: 106 --DTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKE---EIVHQLPSNKPEEL 160
Query: 263 VKLVESIIDAEKAKVQQRSA 282
V+ I+ + ++ ++
Sbjct: 161 ENNVDQILKWIEQWIKDHNS 180
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.2 bits (68), Expect = 0.67
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 65 AELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGK----DALIKKLRE 112
LL+ + SN P + +SGP G GK + K L E
Sbjct: 51 QVLLQKVLLYHREQEQSNK--GKPLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 30.1 bits (68), Expect = 0.68
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRE 112
P +I +SG + GK + +K+ E
Sbjct: 24 RPFLIGVSGGTASGKSTVCEKIME 47
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 29.9 bits (68), Expect = 0.70
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRES 113
P P +I I+G + GK L + L +
Sbjct: 4 PKPFVIGIAGGTASGKTTLAQALART 29
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 30.3 bits (67), Expect = 0.70
Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 1/90 (1%)
Query: 132 EENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQG 191
+ G + + + + + E+ Y G + + Y L +
Sbjct: 73 DNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNR-RR 131
Query: 192 AQTLRRVLGDSAVFVFLMAESETALVERLV 221
L G S + L +++
Sbjct: 132 ILNLPTSAGRSLIQALLARYYLENYEGKIL 161
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 30.2 bits (69), Expect = 0.72
Identities = 9/19 (47%), Positives = 16/19 (84%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I +++GPSGVGK +++ +L
Sbjct: 167 ICILAGPSGVGKSSILSRL 185
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 29.8 bits (68), Expect = 0.78
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 92 IIVISGPSGVGKDALIKKL 110
V +G SGVGK +L+ +
Sbjct: 175 TTVFAGQSGVGKSSLLNAI 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 29.7 bits (67), Expect = 0.79
Identities = 14/75 (18%), Positives = 25/75 (33%)
Query: 90 PLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTM 149
II+ G G GK ++ + R E +Y + K+E +
Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVT 61
Query: 150 IDKNELLEYALVYGD 164
+ + + L GD
Sbjct: 62 GMQFDTAKSILYGGD 76
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 29.8 bits (68), Expect = 0.90
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I ++G SGVGK +L+ +
Sbjct: 171 ISTMAGLSGVGKSSLLNAI 189
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 29.7 bits (67), Expect = 1.0
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 16/52 (30%)
Query: 65 AELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGK----DALIKKLRE 112
+L+ ++ G A + I+G GVGK DAL L
Sbjct: 42 RDLIDAVLPQTGRAI------------RVGITGVPGVGKSTTIDALGSLLTA 81
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 29.4 bits (65), Expect = 1.3
Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 25/143 (17%)
Query: 68 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATS-- 125
LR+L L ++++ G G GK I + L ++
Sbjct: 144 LRTLRRLLKDGEPHVSSAK-----VVLVDGVPGCGKTKEILSRVNFEEDL--ILVPGRQA 196
Query: 126 ------RPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAK 179
R G + + FL K ++ ++ D M
Sbjct: 197 AEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQFKRLFIDEG---------LMLH 247
Query: 180 GYDIILRVDIQGAQTLRRVLGDS 202
+ V++ V GD+
Sbjct: 248 TGCVNFLVEMSLCDIA-YVYGDT 269
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 28.9 bits (64), Expect = 1.4
Identities = 26/199 (13%), Positives = 58/199 (29%), Gaps = 30/199 (15%)
Query: 87 PPNPLIIVISGPSGVGK----DALIKKLR-ESRDSLRFVVTATSRPMRPGEENGKDYYFV 141
+V+ G SG GK + + E ++ F M+ G + +
Sbjct: 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP 85
Query: 142 SKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRRVLGD 201
+D + + K+ R+ + R
Sbjct: 86 WLRSLAEWMDARADAGVSTIIT--CSALKRTYRDVL-------------------REGPP 124
Query: 202 SAVFVFLMAESETALVERLVERKTE-SREELLVRIATAREEIKHVKNFDYVVVNAEGKLD 260
S F+ L +E + R+ +R+ LL E ++ + +V++ +
Sbjct: 125 SVDFLHLDGPAEV-IKGRMSKREGHFMPASLLQSQLATLEALEPDE--SGIVLDLRQPPE 181
Query: 261 VAVKLVESIIDAEKAKVQQ 279
++ + +D A
Sbjct: 182 QLIERALTWLDIAPAVATH 200
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.9 bits (64), Expect = 1.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 90 PLIIVISGPSGVGKDALIKKL 110
LI+ I G S GK LI ++
Sbjct: 2 SLILSIVGTSDSGKTTLITRM 22
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis,
nucleotide-binding, transferase, structural genomics;
1.80A {Thermus thermophilus}
Length = 186
Score = 28.6 bits (65), Expect = 1.6
Identities = 25/106 (23%), Positives = 41/106 (38%), Gaps = 21/106 (19%)
Query: 173 IREYMAKGYDIIL----RVDIQGAQTLRRVLGDSAV---FVFLMAESETALVERLVERKT 225
IRE +A+ I R Q A+ L R+L ++ V L+ E LV R++ R
Sbjct: 72 IREELAERV--IFDGFPRTLAQ-AEALDRLLSETGTRLLGVVLVEVPEEELVRRILRRAE 128
Query: 226 ESR------EELLVRIATAREEIKHVKNF-----DYVVVNAEGKLD 260
E + R+ RE+ + + + V+ G D
Sbjct: 129 LEGRSDDNEETVRRRLEVYREKTEPLVGYYEARGVLKRVDGLGTPD 174
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.2 bits (66), Expect = 1.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 92 IIVISGPSGVGKDALIKKL 110
I + +G SGVGK +L+ L
Sbjct: 217 ISIFAGQSGVGKSSLLNAL 235
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.5 bits (63), Expect = 1.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVV 121
+ ++GP GVGK LI K E S V
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPV 32
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 28.4 bits (63), Expect = 2.0
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 91 LIIVISGPSGVGKDALIKKLRE 112
+ I I G G GK + ++ +
Sbjct: 1 MKIAIFGTVGAGKSTISAEISK 22
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 28.6 bits (64), Expect = 2.4
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 16/52 (30%)
Query: 65 AELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGK----DALIKKLRE 112
+LL ++ G+ + ++G G GK +A L
Sbjct: 43 TQLLDAIMPYCGNTL------------RLGVTGTPGAGKSTFLEAFGMLLIR 82
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 28.2 bits (64), Expect = 2.6
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 86 PPPNPLIIVISGPSGVGKDAL 106
P I + GP+ GK AL
Sbjct: 6 KASLPKAIFLMGPTASGKTAL 26
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 28.5 bits (63), Expect = 2.8
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 92 IIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMID 151
I ++ G GK ++IK + + R + KD+ ++E ++
Sbjct: 32 ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER-NYISYKDFLLELQKEINKLVK 90
Query: 152 KNELLEYALVYGDYKGIPKKQIR 174
+ L AL I +I+
Sbjct: 91 RLPSLLKALKNIQGIVIMGNEIK 113
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2; 2.70A
{Staphylococcus epidermidis atcc 12228}
Length = 340
Score = 28.3 bits (64), Expect = 3.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 88 PNPLIIVISGPSGVGKDAL 106
P +IVI GP+ GK L
Sbjct: 5 TKPFLIVIVGPTASGKTEL 23
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 27.7 bits (61), Expect = 3.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 92 IIVISGPSGVGKDALIKKL 110
+ + G GK L++K
Sbjct: 6 VWQVVGYKHSGKTTLMEKW 24
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 27.9 bits (62), Expect = 3.6
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 16/52 (30%)
Query: 65 AELLRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGK----DALIKKLRE 112
+LL L G+A + I+G GVGK +AL L E
Sbjct: 66 QQLLLRLLPDSGNAH------------RVGITGVPGVGKSTAIEALGMHLIE 105
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
1w2h_A*
Length = 214
Score = 27.7 bits (62), Expect = 3.7
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 18/103 (17%)
Query: 91 LIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPMRPGEENGKD---YYFVSKEEFL 147
++I I G G GK L++KL + + V + P R G+ D + L
Sbjct: 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP-RYGQSVAADIAAEALHGEHGDL 59
Query: 148 TMIDKNELLEYA-----LVYGDYKGIPKKQIREYMAKGYDIIL 185
+A V I+ +IL
Sbjct: 60 ASSVYAMATLFALDRAGAV---------HTIQGLCRGYDVVIL 93
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 27.8 bits (62), Expect = 3.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 87 PPNPLIIVISGPSGVGK 103
P ++ +SG G GK
Sbjct: 19 QPGRQLVALSGAPGSGK 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 27.8 bits (62), Expect = 4.2
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 64 KAELLRSLEASLGH--AFDSNPVCPPPNPLIIVISGPSGVGKDALIKKL 110
A++ +E L H F + V PP I++ GP G GK + + +
Sbjct: 213 LAQIKEMVELPLRHPALFKAIGVKPP---RGILLYGPPGTGKTLIARAV 258
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 27.8 bits (61), Expect = 5.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 89 NPLIIVISGPSGVGKDALIKKLRESRDSLRFVVT 122
N + ++ G VGK +L++ R +
Sbjct: 30 NYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.4 bits (60), Expect = 5.6
Identities = 21/169 (12%), Positives = 60/169 (35%), Gaps = 14/169 (8%)
Query: 68 LRSLEASLGHAFDSNPVCPPPNPLIIVISGPSGVGKDALIKK-LRESRDSLRFVVTATSR 126
LR ++ + + + + G +G GK + K E + + +
Sbjct: 29 LRDAAIAIRYFVKNEV---KFS---NLFLGLTGTGKTFVSKYIFNEIEEVKK--EDEEYK 80
Query: 127 PMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILR 186
++ N ++ + + L+ + +G G +I+ II
Sbjct: 81 DVKQAYVNCREVGG-TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYL 139
Query: 187 VDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRI 235
++ ++R GD ++ L +++ +++ ++ R+ + R+
Sbjct: 140 DEVD--TLVKRRGGDIVLYQLLRSDANISVI--MISNDINVRDYMEPRV 184
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 27.2 bits (60), Expect = 6.0
Identities = 6/21 (28%), Positives = 10/21 (47%)
Query: 86 PPPNPLIIVISGPSGVGKDAL 106
++V+ G +G GK L
Sbjct: 36 RHRKEKLLVLMGATGTGKSRL 56
>3fge_A Putative flavin reductase with split barrel domai; YP_750721.1;
1.74A {Shewanella frigidimarina ncimb 400}
Length = 203
Score = 26.8 bits (60), Expect = 6.3
Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 9/50 (18%)
Query: 82 NPVCPPPNPLIIVISGPSGVGKDAL--IKKLRESRDSLRFVVTATSRPMR 129
+ P PL+ +I P V + I + + + ++ +
Sbjct: 51 IHLGANP-PLMGMIIRPHSVPRHTFENIMQTGL------YTINHVNQSIY 93
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 27.4 bits (61), Expect = 6.5
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 108 KKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVYGDYKG 167
+ F P ++ F ++E + ++N+ + L ++
Sbjct: 393 TPFTDE-HLQPFERVYGEDPHGLSPRTEGEWSFNAEETEVADSEENKNTDQHLATSRWRK 451
Query: 168 IPKKQIREYMAKGYDI 183
++ IR + DI
Sbjct: 452 FSREWIRTAKSDSLDI 467
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation,
ATP-binding, cytoplasm, mitochondrion,
nucleotide-binding, nucleus; 2.95A {Saccharomyces
cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Length = 409
Score = 27.3 bits (61), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 89 NPLIIVISGPSGVGKDAL 106
+ +IVI+G +GVGK L
Sbjct: 1 SKKVIVIAGTTGVGKSQL 18
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 27.4 bits (60), Expect = 6.7
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 15/107 (14%)
Query: 89 NPLIIVISGPSGVGKDALIKKLR--ESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEF 146
+ L + ++G +G GK + I LR + + M Y
Sbjct: 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP------YKHPNIPN 121
Query: 147 LTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQ 193
+ D G P + + YD + + +
Sbjct: 122 VVFWDLPG-------IGSTNFPPDTYLEKMKFYEYDFFIIISATRFK 161
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix,
DNA-binding, transcription regulation; 2.22A
{Streptomyces coelicolor}
Length = 231
Score = 26.9 bits (59), Expect = 6.7
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 15/106 (14%)
Query: 138 YYFVSKEEFLTMIDKNELLEYALVYGDYKGIPKKQIREYMAKGYDIILRVDIQGAQTLRR 197
YF ++E+ I E+ E A+ ++ Q
Sbjct: 62 RYFETREQIFLKITAEGWKEW--------------SAELCARLRELPGAAPDAVGQVFAA 107
Query: 198 VLGDSAVFVFLMAESETALVERL-VERKTESREELLVRIATAREEI 242
L +F L+A++ L + VE + L + E+
Sbjct: 108 TLAARPLFCDLLAQAPLNLERNVSVESVRSFKIATLDEVGRIGAEL 153
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 26.6 bits (59), Expect = 6.9
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 93 IVISGPSGVGKDALIKKLRESRDSLRFVVTAT 124
++I G +G GK L+++L +++ S + +AT
Sbjct: 5 LMIVGNTGSGKTTLLQQLMKTKKSDLGMQSAT 36
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 26.9 bits (59), Expect = 7.1
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 7/61 (11%)
Query: 86 PPPNPLIIVISGPSGVGKDALI-----KKLRESRDSLRFVVTATSRPMRPGEENGKDYYF 140
P + L IV+ G +G GK A +K+ S + + + R +
Sbjct: 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCE--KRSSSWKETELVV 82
Query: 141 V 141
V
Sbjct: 83 V 83
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Length = 247
Score = 26.8 bits (59), Expect = 7.2
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 187 VDIQGAQTLRRVLGDSAVFVFLMAESETALVERLVERKTESREELLVRIATAREEIKH 244
+ V+ + F L + L +R ERK ES EL R+ H
Sbjct: 189 KPSSYYDRVVDVMEELVKFTLLTRDCSAYLTDRYSERK-ESAAELEHRVTLKSVHHHH 245
>3i4h_X Endoribonuclease; hydrolase; 2.25A {Pyrococcus furiosus} PDB:
3pkm_A
Length = 273
Score = 26.9 bits (59), Expect = 7.3
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 103 KDALIKKLRESRDSLRFVVTATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYALVY 162
+ + + + + FV T + + + ++EF ++I + +Y + Y
Sbjct: 123 HEIKVLREPKKFNGSTFV-TLSPIAVTVVRKGKSYDVPPMEKEFYSIIKDDLQDKYVMAY 181
Query: 163 G-------DYKGIPKKQIREYMAKGYDII---LRVDIQGAQTLRRVL 199
G + + + K R + G L G L +V
Sbjct: 182 GDKPPSEFEMEVLIAKPKRFRIKPGIYQTAWHLVFRAYGNDDLLKVG 228
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, unknown function; 1.20A {Bacillus subtilis}
SCOP: b.174.1.1
Length = 80
Score = 25.5 bits (55), Expect = 7.4
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 211 ESETALVERLVERKTESREELLVRIATAREEIKHVKNFDYVVVNAE 256
E LV R+ E S+E ++ + E K + + +Y + N E
Sbjct: 24 EVSETLVTRICENLLLSKEVSFLKADGSVENFK-LSDMEYEITNTE 68
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis;
HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB:
2ze5_A* 2ze7_A* 2ze8_A
Length = 253
Score = 26.7 bits (59), Expect = 7.5
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 91 LIIVISGPSGVGKDAL 106
L+ +I GP+ GK +
Sbjct: 2 LLHLIYGPTCSGKTDM 17
>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL
oxidoreductase, alpha/beta domain, rossmann fold; HET:
SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A*
3phj_A*
Length = 269
Score = 26.7 bits (60), Expect = 7.7
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 225 TESREELLVRIATAREEIKHVKNFDYVVVNA-----EGKLDVAVKLVESIIDAEK 274
+ + R+ FD +++NA +L + ++++ K
Sbjct: 150 SSRGLDFFQRLGCDCFMEPPKSAFD-LIINATSASLHNELPLNKEVLKGYFKEGK 203
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 26.9 bits (59), Expect = 7.8
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 90 PLIIVISGPSGVGKDALIKKLRE 112
II ++G SG G + +
Sbjct: 5 HPIISVTGSSGAGTSTVKHTFDQ 27
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing
proteins); PSI-2, midwest center for structural
genomics; 1.65A {Chromobacterium violaceum}
Length = 113
Score = 26.0 bits (58), Expect = 8.3
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 34 QRRFHHSLSLTPHFFSSNLRMNHTQTAAVKKAELLRSLEASL 75
+R F L P + LR+N + +LL+ S+
Sbjct: 41 ERLFKQYLGTVPSKYYLELRLNRAR-------QLLQQTSKSI 75
>3ufc_X CAS6, putative uncharacterized protein; ferredoxin-like domain, RNA
binding, hydrolase; 2.03A {Pyrococcus furiosus} PDB:
3qjl_A 3qjj_A 3qjp_A
Length = 243
Score = 26.5 bits (58), Expect = 8.7
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 103 KDALIKKLRESRDSLRFVV---TATSRPMRPGEENGKDYYFVSKEEFLTMIDKNELLEYA 159
D K +E ++ F G++ + E FL + K LL Y
Sbjct: 112 ADIKALKSKEIKNVNIFSTLSPIVVRTVKFEGDKLKHWDLYPHDELFLDRLRKVMLLRYH 171
Query: 160 LVYGDYKGIPKKQIREYMAKGYDIILR 186
V GD +I K +I++
Sbjct: 172 EVMGDLPEDKDFRIELIKFKPTRLIVK 198
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 27.0 bits (60), Expect = 9.0
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 190 QGAQTL------RRVLGDSAVFVFLMAESETALVERLVE---RKTESREELLVRIATA 238
L R VL A+ + E +TAL+ RL R+ +++E L R+ T
Sbjct: 326 VFGNPLIQQPLMRHVLSRMALQL----EGQTALLFRLARAWDRRADAKEALWARLFTP 379
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 26.9 bits (59), Expect = 9.2
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
Query: 93 IVISGPSGVGKDALIKKL-----RESRDSLRFV 120
I I G +G GK A++K + ++ + V
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHV 80
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Length = 322
Score = 26.7 bits (60), Expect = 9.2
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 90 PLIIVISGPSGVGKDAL 106
++ I GP+ VGK
Sbjct: 3 EKLVAIVGPTAVGKTKT 19
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 26.7 bits (58), Expect = 9.4
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 87 PPNPLIIVISGPSGVGKDALIKKLRESRDSLRFVVTATSRPM 128
L I + G G+GK ++ + P+
Sbjct: 9 KMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPL 50
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 27.0 bits (60), Expect = 9.7
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 88 PNPLIIVISGPSGVGKDALIKKLRE 112
+++ G G GK L + + E
Sbjct: 58 NQKRHVLLIGEPGTGKSMLGQAMAE 82
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 26.7 bits (60), Expect = 9.9
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 247 NFDYVVVNAEG-KLDVAVKLVESIIDAEKAKVQQRSAVI 284
Y N G K +A L +++ AE + S +
Sbjct: 248 ELKYGQYNVNGEKYIIAEALSDAV--AEALDWDKASIKL 284
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.368
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,294,051
Number of extensions: 267888
Number of successful extensions: 1304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1241
Number of HSP's successfully gapped: 168
Length of query: 284
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 191
Effective length of database: 4,105,140
Effective search space: 784081740
Effective search space used: 784081740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.2 bits)