BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023333
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXR|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form A
pdb|2BXS|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
pdb|2BXS|B Chain B, Human Monoamine Oxidase A In Complex With Clorgyline,
Crystal Form B
Length = 527
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
E G V +IG G++G+S A L + G V + E+R +GG+ + ++H ++++
Sbjct: 5 EKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVD 64
Query: 82 MGLHIFFGCYNNLFRLMKKFFMDVYR 107
+G N + RL K+ ++ Y+
Sbjct: 65 VGGAYVGPTQNRILRLSKELGIETYK 90
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
K+ IIGAG G+ AV L + G++ +YE GG SF+D++G ++G H+ F
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSH 70
Query: 91 YNNLFRLMKKFFMDVYRQLRQALGFLLR 118
Y ++F DV Q L R
Sbjct: 71 Y--------QYFDDVMDWAVQGWNVLQR 90
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 337
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 338 GGNPMAVVSK 347
>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With
Harmine
Length = 513
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
V +IG G++G+S A L + G V + E+R +GG+ + ++H +++++G N
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93 NLFRLMKKFFMDVYR 107
+ RL K+ ++ Y+
Sbjct: 65 RILRLSKELGIETYK 79
>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a)
With Harmine
Length = 513
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
V +IG G++G+S A L + G V + E+R +GG+ + ++H +++++G N
Sbjct: 5 VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93 NLFRLMKKFFMDVYR 107
+ RL K+ ++ Y+
Sbjct: 65 RILRLSKELGIETYK 79
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 216 GGNPMAVVSK 225
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 216 GGNPMAVVSK 225
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 167 GGNPMAVVSK 176
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 167
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 168 GGNPMAVVSK 177
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 167 GGNPMAVVSK 176
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 167 GGNPMAVVSK 176
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
KV IIG+G++G++ A +L G +V + E+R +GG+V +F + GN++ ++G + G
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91 YNNLFRLMKK 100
N ++ K
Sbjct: 167 GGNPMAVVSK 176
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B. Jararacussu
Venom
Length = 497
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMG 83
PK +V I+GAG++G+S A L + GH+V + E+ GG+V ++ + K G + +G
Sbjct: 45 NPK-RVVIVGAGMSGLSAAYVLANAGHQVTVLEASERAGGQVKTYRNEKEGWYANLG 100
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%)
Query: 22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
E + G V +IG G++G++ A L + V + E+R +GG+ + ++H ++
Sbjct: 13 EKPNLAGHMFDVVVIGGGISGLAAAKLLSEYKINVLVLEARDRVGGRTYTVRNEHVKWVD 72
Query: 82 MGLHIFFGCYNNLFRLMKKFFMDVYR 107
+G N + RL K+ ++ Y+
Sbjct: 73 VGGAYVGPTQNRILRLSKELGIETYK 98
>pdb|1WAM|A Chain A, Structure Of Udp-Galactopyranose Mutase From Klebsiella
Pneumoniae With Fadh-
Length = 384
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGN---HIEMGLHIF 87
K+ I+GAG +G +L ++GH+V I + R IGG D N H+ G HIF
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHV-YGPHIF 62
>pdb|2BI7|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
Oxidised Fad
pdb|2BI8|A Chain A, Udp-Galactopyranose Mutase From Klebsiella Pneumoniae
With Reduced Fad
Length = 384
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGN---HIEMGLHIF 87
K+ I+GAG +G +L ++GH+V I + R IGG D N H+ G HIF
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHV-YGPHIF 62
>pdb|2E1M|A Chain A, Crystal Structure Of L-Glutamate Oxidase From
Streptomyces Sp. X-119-6
Length = 376
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVGSFIDKHG 77
GP ++ I+GAG+AG+ L GH+V I E+ + +GG++ +F K G
Sbjct: 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKG 92
>pdb|3GF4|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3GF4|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To
Udp-Glucose
pdb|3INR|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INR|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Oxidized)
pdb|3INT|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3INT|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Udp-
Galactose (Reduced)
pdb|3KYB|A Chain A, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
pdb|3KYB|B Chain B, Structure Of Udp-Galactopyranose Mutase Bound To Flavin
Mononucleotide
Length = 390
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGN---HIEMGLHIFF 88
K+ I+GAG +G +L ++GH+V I + R IGG D N H+ G HIF
Sbjct: 5 KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHV-YGPHIFH 63
Query: 89 GCYNNLFRLMKK 100
++ + K
Sbjct: 64 TDNETVWNYINK 75
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Oxidized
Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In Complex
With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE-MGLHIFFGCYNN 93
I+GAG AG A L G V I + R IGG D G I G HIF +
Sbjct: 34 IVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKD 93
Query: 94 LFRLMKKF 101
+F + +F
Sbjct: 94 VFEYLSRF 101
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
V I+GAG+AG+S A L GH+V + E+ GG+V ++
Sbjct: 36 VVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTY 75
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From
Methanosarcina Mazei. Northeast Structural Genomics
Consortium Target Id Mar208
Length = 425
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
K +IGAGL G+ +A L GHEV+++E GG+
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGR 38
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
K +A++GAG AG++ A+ +GH+V ++++ S IGG+
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQ 411
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
+K +IGAG+ G+S AV L G + D+YE+ I VG+ I N ++ H+ G
Sbjct: 24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-KPVGAAISVWPNGVKCMAHLGMG 81
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS-FIDKHGNHIEMGLHIFFGCY 91
VAI+GAG++G++ A L G V + E+R +GG+ + ID G +E+G
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--GAVLEIGGQWVSPDQ 65
Query: 92 NNLFRLMKKFFMDVYRQLRQ 111
L L+ + + + + R+
Sbjct: 66 TALISLLDELGLKTFERYRE 85
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI-DKHGNHIEMG 83
V ++GAG++G+S A L GH+V + E+ GG+V ++ DK + +G
Sbjct: 36 VVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGRVRTYRNDKEDWYANLG 87
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo
Complexed With Fad And Uric Acid
Length = 407
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
K +IGAG+ G+S AV L G + D+YE+ I VG+ I N ++ H+ G
Sbjct: 25 KAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEI-KPVGAAISVWPNGVKCXAHLGXGDI 83
Query: 92 NNLF 95
F
Sbjct: 84 XETF 87
>pdb|3ZYX|A Chain A, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
pdb|3ZYX|B Chain B, Crystal Structure Of Human Monoamine Oxidase B In Complex
With Methylene Blue And Bearing The Double Mutation
I199a- Y326a
Length = 519
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 12 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 71
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 72 KELGLETYK 80
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMG 83
V ++GAG++G+S A L GH+V + E+ GG+V + + K G + +G
Sbjct: 36 VVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGRVRTHRNSKEGWYANLG 87
>pdb|2XFO|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
pdb|2XFO|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B
Ile199ala Mutant In Complex With 2-(2-Benzofuranyl)-2-
Imidazoline
Length = 520
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2C76|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C76|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2XFU|A Chain A, Human Monoamine Oxidase B With Tranylcypromine
pdb|2XFU|B Chain B, Human Monoamine Oxidase B With Tranylcypromine
Length = 519
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 12 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 71
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 72 KELGLETYK 80
>pdb|1GOS|A Chain A, Human Monoamine Oxidase B
pdb|1GOS|B Chain B, Human Monoamine Oxidase B
pdb|1OJ9|A Chain A, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJ9|B Chain B, Human Monoamine Oxidase B In Complex With
1,4-Diphenyl-2-Butene
pdb|1OJA|A Chain A, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJA|B Chain B, Human Monoamine Oxidase B In Complex With Isatin
pdb|1OJC|A Chain A, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJC|B Chain B, Human Monoamine Oxidase B In Complex With
N-(2-Aminoethyl)-P-Chlorobenzamide
pdb|1OJD|A Chain A, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|B Chain B, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|C Chain C, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|D Chain D, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|E Chain E, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|F Chain F, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|G Chain G, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|H Chain H, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|I Chain I, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1OJD|L Chain L, Human Monoamine Oxidase B In Complex With
Lauryldimethylamine-N-Oxide (Ldao)
pdb|1S2Q|A Chain A, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Q|B Chain B, Crystal Structure Of Maob In Complex With
N-Propargyl-1(R)-Aminoindan (Rasagiline)
pdb|1S2Y|A Chain A, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S2Y|B Chain B, Crystal Structure Of Maob In Complex With
N-propargyl-1(s)- Aminoindan
pdb|1S3B|A Chain A, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3B|B Chain B, Crystal Structure Of Maob In Complex With N-Methyl-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|A Chain A, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|1S3E|B Chain B, Crystal Structure Of Maob In Complex With 6-Hydroxy-N-
Propargyl-1(R)-Aminoindan
pdb|2BK3|A Chain A, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BK3|B Chain B, Human Monoamine Oxidase B In Complex With Farnesol
pdb|2BYB|A Chain A, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2BYB|B Chain B, Human Monoamine Oxidase B In Complex With Deprenyl
pdb|2C64|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C64|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C65|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C65|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C66|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C66|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C67|A Chain A, Mao Inhibition By Rasagiline Analogues
pdb|2C67|B Chain B, Mao Inhibition By Rasagiline Analogues
pdb|2C70|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C70|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2V5Z|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V5Z|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor Safinamide
pdb|2V60|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V60|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor
7-(3-Chlorobenzyloxy)-4-Carboxaldehyde-Coumarin
pdb|2V61|A Chain A, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2V61|B Chain B, Structure Of Human Mao B In Complex With The Selective
Inhibitor 7-(3-Chlorobenzyloxy)-4-(Methylamino)methyl-
Coumarin
pdb|2VRL|A Chain A, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRL|B Chain B, Structure Of Human Mao B In Complex With Benzylhydrazine
pdb|2VRM|A Chain A, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VRM|B Chain B, Structure Of Human Mao B In Complex With
Phenyethylhydrazine
pdb|2VZ2|A Chain A, Human Mao B In Complex With Mofegiline
pdb|2VZ2|B Chain B, Human Mao B In Complex With Mofegiline
pdb|2XCG|A Chain A, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XCG|B Chain B, Tranylcypromine-Inhibited Human Monoamine Oxidase B In
Complex With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFN|A Chain A, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFN|B Chain B, Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl) -2-Imidazoline
pdb|2XFP|A Chain A, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFP|B Chain B, Isatin-Inhibited Human Monoamine Oxidase B In Complex With
2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|A Chain A, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|2XFQ|B Chain B, Rasagiline-Inhibited Human Monoamine Oxidase B In Complex
With 2-(2-Benzofuranyl)-2-Imidazoline
pdb|3PO7|A Chain A, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|3PO7|B Chain B, Human Monoamine Oxidase B In Complex With Zonisamide
pdb|4A79|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A79|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Pioglitazone
pdb|4A7A|A Chain A, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
pdb|4A7A|B Chain B, Crystal Structure Of Human Monoamine Oxidase B (Mao B) In
Complex With Rosiglitazone
Length = 520
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2C75|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C75|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2BK4|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK4|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Rasagiline
pdb|2BK5|A Chain A, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
pdb|2BK5|B Chain B, Human Monoamine Oxidase B: I199f Mutant In Complex With
Isatin
Length = 520
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2C72|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C72|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|2C73|A Chain A, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
pdb|2C73|B Chain B, Functional Role Of The Aromatic Cage In Human Monoamine
Oxidase B: Structures And Catalytic Properties Of Tyr435
Mutant Proteins
Length = 520
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 39 GLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM 98
G++GM+ A L D G V + E+R +GG+ + ++ ++++G N + RL
Sbjct: 13 GISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLA 72
Query: 99 KKFFMDVYR 107
K+ ++ Y+
Sbjct: 73 KELGLETYK 81
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
+VA+IGAG++G++ A +L G V ++E+ GGK+ S
Sbjct: 15 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRS 54
>pdb|4ECH|A Chain A, Yeast Polyamine Oxidase Fms1, H67q Mutant
pdb|4ECH|B Chain B, Yeast Polyamine Oxidase Fms1, H67q Mutant
Length = 516
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
K KV IIGAG+AG+ A L G + + E+R +GG++ + G ++G
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1Z6L|A Chain A, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|1Z6L|B Chain B, Crystal Structure Of Fms1 In Complex With Its Substrate
pdb|3BI2|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI2|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI4|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|A Chain A, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BI5|B Chain B, Crystal Structures Of Fms1 In Complex With Its
Inhibitors
pdb|3BNM|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNM|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3r,3'r)-
Methylated Spermine
pdb|3BNU|B Chain B, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3BNU|A Chain A, Crystal Structure Of Polyamine Oxidase Fms1 From
Saccharomyces Cerevisiae In Complex With Bis-(3s,3's)-
Methylated Spermine
pdb|3CN8|B Chain B, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CN8|A Chain A, Crystal Structure Of Fms1 In Complex With Spermidine
pdb|3CND|B Chain B, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CND|A Chain A, Crystal Structure Of Fms1 In Complex With N1-Acspermine
pdb|3CNP|B Chain B, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNP|A Chain A, Crystal Structure Of Fms1 In Complex With
S-n1-acmespermidine
pdb|3CNS|A Chain A, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNS|B Chain B, Crystal Structure Of Fms1 In Complex With
S-Bz-Mespermidine
pdb|3CNT|B Chain B, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
pdb|3CNT|A Chain A, Crystal Structure Of Fms1 In Complex With
R-Bz-Mespermidine
Length = 516
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
K KV IIGAG+AG+ A L G + + E+R +GG++ + G ++G
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1RSG|A Chain A, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
pdb|1RSG|B Chain B, Crystal Structure Of The Polyamine Oxidase Fms1 From
Yeast
Length = 516
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
K KV IIGAG+AG+ A L G + + E+R +GG++ + G ++G
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|4GDP|A Chain A, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|B Chain B, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|C Chain C, Yeast Polyamine Oxidase Fms1, N195a Mutant
pdb|4GDP|D Chain D, Yeast Polyamine Oxidase Fms1, N195a Mutant
Length = 516
Score = 34.7 bits (78), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
K KV IIGAG+AG+ A L G + + E+R +GG++ + G ++G
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|1YY5|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1YY5|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|A Chain A, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|B Chain B, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|C Chain C, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
pdb|1XPQ|D Chain D, Crystal Structure Of Fms1, A Polyamine Oxidase From
Yeast
Length = 513
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
K KV IIGAG+AG+ A L G + + E+R +GG++ + G ++G
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIG 62
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 34.7 bits (78), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
+ KVAIIG G AG + L GH+V IYE +F +VG
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVG 63
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c Mutant
Length = 453
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS-FIDKHGNHIEMGLHIFFGCY 91
VAI+GAG +G++ A L G V + E+R +GG+ + ID G +E+G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--GAVLEIGGQWVSPDQ 65
Query: 92 NNLFRLMKKFFMDVYRQLRQ 111
L L+ + + + + R+
Sbjct: 66 TALISLLDELGLKTFERYRE 85
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS-FIDKHGNHIEMGLHIFFGCY 91
VAI+GAG +G++ A L G V + E+R +GG+ + ID G +E+G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--GAVLEIGGQWVSPDQ 65
Query: 92 NNLFRLMKKFFMDVYRQLRQ 111
L L+ + + + + R+
Sbjct: 66 TALISLLDELGLKTFERYRE 85
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS-FIDKHGNHIEMGLHIFFGCY 91
V I+GAG +G++ A EL G V + E+R +GG+ + ID G +E+G
Sbjct: 10 VVIVGAGPSGLTAARELKKAGLSVAVLEARDRVGGRTWTDTID--GAMLEIGGQWVSPDQ 67
Query: 92 NNLFRLMKKFFMDVYRQLR 110
L L+ + + +Y + R
Sbjct: 68 TVLMELLDELGLKMYSRYR 86
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In Putrescine
Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS-FIDKHGNHIEMGLHIFFGCY 91
VAI+GAG +G++ A L G V + E+R +GG+ + ID G +E+G
Sbjct: 8 VAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTID--GAVLEIGGQWVSPDQ 65
Query: 92 NNLFRLMKKFFMDVYRQLRQ 111
L L+ + + + + R+
Sbjct: 66 TALISLLDELGLKTFERYRE 85
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
+ VA++G G++G++ A L +G + + ES + +GG VG+
Sbjct: 17 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGT 57
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
V ++G G AG+ +A EL G++V + E+R+ GG+V
Sbjct: 14 VVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV 50
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
++A++G ++G++ A+ L D G +VD+YE
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYE 35
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
+ +AIIG G+AG+S A L GH+V +++
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFD 32
>pdb|1H7W|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1H7W|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig
pdb|1GT8|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GT8|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And Uracil-4-Acetic Acid
pdb|1GTE|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTE|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Binary
Complex With 5-Iodouracil
pdb|1GTH|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
pdb|1GTH|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex With Nadph And 5-Iodouracil
Length = 1025
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGG 67
PE Y K+A++GAG A +S A L G+ ++ I+E + ++GG
Sbjct: 183 PEAYSA---KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
>pdb|1H7X|A Chain A, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|B Chain B, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|C Chain C, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
pdb|1H7X|D Chain D, Dihydropyrimidine Dehydrogenase (Dpd) From Pig, Ternary
Complex Of A Mutant Enzyme (C671a), Nadph And 5-
Fluorouracil
Length = 1025
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGG 67
PE Y K+A++GAG A +S A L G+ ++ I+E + ++GG
Sbjct: 183 PEAYSA---KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225
>pdb|3IHG|A Chain A, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|B Chain B, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
pdb|3IHG|C Chain C, Crystal Structure Of A Ternary Complex Of Aklavinone-11
Hydroxylase With Fad And Aklavinone
Length = 535
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62
++ V ++GAGL G+STA+ L QG V + E R
Sbjct: 5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERR 37
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
V IIGAG AG++ A +L + G +V + E++ IGG+V G + G I GC N
Sbjct: 339 VIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCIN 398
Query: 93 NLFRLM 98
N LM
Sbjct: 399 NPVALM 404
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
V IIGAG AG++ A +L + G +V + E++ IGG+V G + G I GC N
Sbjct: 347 VIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCIN 406
Query: 93 NLFRLM 98
N LM
Sbjct: 407 NPVALM 412
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
V IIGAG AG++ A +L + G +V + E++ IGG+V G + G I GC N
Sbjct: 359 VIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCIN 418
Query: 93 NLFRLM 98
N LM
Sbjct: 419 NPVALM 424
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV------GSFIDKHGNHI 80
I+G+GL G A EL +V + E R+ IGG G I K+G HI
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHI 57
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGG 67
K+AIIGAG +G+ TA LL + +V ++E R GG
Sbjct: 10 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 47
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGG 67
K+AIIGAG +G+ TA LL + +V ++E R GG
Sbjct: 8 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIY 59
V+I+GAG G + +V L+D G+EV I+
Sbjct: 3 VSILGAGAMGSALSVPLVDNGNEVRIW 29
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
+ P+ + G V ++GAG+AG+ QG V +E+ S +GG
Sbjct: 4 QHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
+ P+ + G V ++GAG+AG+ QG V +E+ S +GG
Sbjct: 4 QHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
+ P+ + G V ++GAG+AG+ QG V +E+ S +GG
Sbjct: 4 QHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Glutathione
Length = 443
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62
+V ++GAGLAG A LL G V ++E R
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFEXR 33
>pdb|3DME|A Chain A, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
pdb|3DME|B Chain B, Crystal Structure Of Conserved Exported Protein From
Bordetella Pertussis. Northeast Structural Genomics
Target Ber141
Length = 369
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66
+IGAG+ G++ A L GHEV + E+ IG
Sbjct: 9 VIGAGVVGLAIARALAAGGHEVLVAEAAEGIG 40
>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A
C-Terminal Six- Histidine Tag
Length = 432
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEV---DIYESR-SFIGGKVGSFIDKH 76
G +K+ I G G G+S V L+ Q HEV DI +++ + K+ +DK
Sbjct: 33 GSEFMKITISGTGYVGLSNGV-LIAQNHEVVALDIVQAKVDMLNQKISPIVDKE 85
>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
pdb|1I0Z|B Chain B, Human Heart L-Lactate Dehydrogenase H Chain, Ternary
Complex With Nadh And Oxamate
Length = 333
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 11 STEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELL-----DQGHEVDIYESR 62
+T K + P E P K+ ++G G GM+ A+ +L D+ VD+ E +
Sbjct: 1 ATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDK 57
>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|B Chain B, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|C Chain C, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
pdb|1T2F|D Chain D, Human B Lactate Dehydrogenase Complexed With Nad+ And 4-
Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid
Length = 333
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 11 STEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELL-----DQGHEVDIYESR 62
+T K + P E P K+ ++G G GM+ A+ +L D+ VD+ E +
Sbjct: 1 ATLKEKLIAPVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDK 57
>pdb|3DTT|A Chain A, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
pdb|3DTT|B Chain B, Crystal Structure Of A Putative F420 Dependent
Nadp-Reductase (Arth_0613) From Arthrobacter Sp. Fb24
At 1.70 A Resolution
Length = 245
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDI 58
K+A++G G G + A L D GHEV I
Sbjct: 21 KIAVLGTGTVGRTXAGALADLGHEVTI 47
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From
Haemophilus Influenzae Rd
Length = 401
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
IIGAG AG+ A +L G V ++++ IG K+
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI 43
>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase
pdb|3PJG|A Chain A, Crystal Structure Of Udp-Glucose Dehydrogenase From
Klebsiella Pneumoniae Complexed With Product
Udp-Glucuronic Acid
pdb|3PLN|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Udp-Glucose
pdb|3PLR|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Udp-Glucose
6-Dehydrogenase Complexed With Nadh And Udp-Glucose
Length = 424
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEV---DIYESR-SFIGGKVGSFIDKH 76
G +K+ I G G G+S V L+ Q HEV DI +++ + K+ +DK
Sbjct: 33 GSEFMKITISGTGYVGLSNGV-LIAQNHEVVALDIVQAKVDMLNQKISPIVDKE 85
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
+V ++GAG++G+S A L + G ++ I E+ IGG++ + G ++E+G + G
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK-TNFAGINVELGANWVEGV 64
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
+V ++GAG++G+S A L + G ++ I E+ IGG++ + G ++E+G + G
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK-TNFAGINVELGANWVEGV 64
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In
Complex With Tetrahydrofolate
Length = 443
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62
+V ++GAGLAG A LL G V ++E R
Sbjct: 3 RVNVVGAGLAGSEAAWTLLRLGVPVRLFEMR 33
>pdb|1KIF|A Chain A, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|B Chain B, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|C Chain C, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|D Chain D, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|E Chain E, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|F Chain F, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|G Chain G, D-Amino Acid Oxidase From Pig Kidney
pdb|1KIF|H Chain H, D-Amino Acid Oxidase From Pig Kidney
pdb|1DAO|A Chain A, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|B Chain B, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|C Chain C, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|D Chain D, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|E Chain E, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|F Chain F, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|G Chain G, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DAO|H Chain H, Covalent Adduct Of D-Amino Acid Oxidase From Pig Kidney
With 3-Methyl-2-Oxo-Valeric Acid
pdb|1DDO|A Chain A, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|B Chain B, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|C Chain C, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|D Chain D, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|E Chain E, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|F Chain F, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|G Chain G, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1DDO|H Chain H, Reduced D-Amino Acid Oxidase From Pig Kidney In Complex
With Imino-Trp
pdb|1VE9|A Chain A, Porcine Kidney D-amino Acid Oxidase
pdb|1VE9|B Chain B, Porcine Kidney D-amino Acid Oxidase
Length = 347
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV 56
++V +IGAG+ G+STA+ + ++ H V
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSV 26
>pdb|2DU8|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|G Chain G, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2DU8|J Chain J, Crystal Structure Of Human D-Amino Acid Oxidase
pdb|2E48|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E48|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase:
Substrate- Free Holoenzyme
pdb|2E49|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E49|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Imino- Serine
pdb|2E4A|A Chain A, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|B Chain B, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|C Chain C, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E4A|D Chain D, Crystal Structure Of Human D-amino Acid Oxidase In
Complex With O-aminobenzoate
pdb|2E82|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|2E82|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase
Complexed With Imino-Dopa
pdb|3CUK|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
pdb|3CUK|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase: Bound
To An Inhibitor
Length = 347
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV 56
++V +IGAG+ G+STA+ + ++ H V
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSV 26
>pdb|2LP4|A Chain A, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 225
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 203 GKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEEL 254
G++ L TD + NLFL Q+ +D+ + D + YICNA +L
Sbjct: 79 GEMQLNTD----IINLFLETKDIMQEQLDAYKNSEEPDAASFEYICNALRQL 126
>pdb|3G3E|A Chain A, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|B Chain B, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|C Chain C, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
pdb|3G3E|D Chain D, Crystal Structure Of Human D-Amino Acid Oxidase In
Complex With Hydroxyquinolin-2(1h)
Length = 351
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV 56
++V +IGAG+ G+STA+ + ++ H V
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSV 26
>pdb|1AN9|A Chain A, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1AN9|B Chain B, D-Amino Acid Oxidase Complex With O-Aminobenzoate
pdb|1EVI|A Chain A, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
pdb|1EVI|B Chain B, Three-Dimensional Structure Of The Purple Intermediate
Of Porcine Kidney D-Amino Acid Oxidase
Length = 340
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV 56
++V +IGAG+ G+STA+ + ++ H V
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSV 26
>pdb|3TNN|H Chain H, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|A Chain A, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|C Chain C, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody.
pdb|3TNN|E Chain E, Crystal Structure Of N5-I5 Fab, An Adcc Mediating And
Non-Neutralizing Cd4i Anti-Hiv- 1 Antibody
Length = 226
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 117 LRTPD-AGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPL-PNDEIIRRVARQVG 174
LR D A + C DL L DY+G+G + T G PL P+ + +G
Sbjct: 86 LRAEDTAVYYCAKDLRLGGGSDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALG 145
Query: 175 TLFP--LPQGLEVIWSS 189
L P+ + V W+S
Sbjct: 146 CLVKDYFPEPVTVSWNS 162
>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|E Chain E, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|F Chain F, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|G Chain G, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
pdb|3PQD|H Chain H, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Complexed With Fbp And Nad+
Length = 326
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG 53
KVA+IGAG G S A L++QG
Sbjct: 7 KVALIGAGFVGSSYAFALINQG 28
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 157 YMPLPNDEIIRRVARQVGTLFPLPQGLEVIWS 188
++P+PND + VG++ +P+ E++WS
Sbjct: 156 HIPVPNDADSPKFKTTVGSVKWVPENSEIVWS 187
>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQE|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis With H171c Mutation
pdb|3PQF|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|B Chain B, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|C Chain C, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
pdb|3PQF|D Chain D, Crystal Structure Of L-Lactate Dehydrogenase From
Bacillus Subtilis Mutation H171c Complexed With Nad+
Length = 326
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 32 KVAIIGAGLAGMSTAVELLDQG 53
KVA+IGAG G S A L++QG
Sbjct: 7 KVALIGAGFVGSSYAFALINQG 28
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 157 YMPLPNDEIIRRVARQVGTLFPLPQGLEVIWS 188
++P+PND + VG++ +P+ E++WS
Sbjct: 313 HIPVPNDADSPKFKTTVGSVKWVPENSEIVWS 344
>pdb|1CHU|A Chain A, Structure Of L-Aspartate Oxidase: Implications For The
Succinate Dehydrogenase FUMARATE REDUCATSE FAMILY
Length = 540
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEV 56
PEH V IIG+G AG+S A+ L DQ H+V
Sbjct: 5 PEH----SCDVLIIGSGAAGLSLALRLADQ-HQV 33
>pdb|1KNP|A Chain A, E. Coli L-aspartate Oxidase: Mutant R386l In Complex
With Succinate
pdb|1KNR|A Chain A, L-aspartate Oxidase: R386l Mutant
Length = 540
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEV 56
PEH V IIG+G AG+S A+ L DQ H+V
Sbjct: 5 PEH----SCDVLIIGSGAAGLSLALRLADQ-HQV 33
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 157 YMPLPNDEIIRRVARQVGTLFPLPQGLEVIWS 188
++P+PND + VG++ +P+ E++WS
Sbjct: 156 HIPVPNDADSPKFKTTVGSVKWVPENSEIVWS 187
>pdb|1I5N|A Chain A, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|B Chain B, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|C Chain C, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
pdb|1I5N|D Chain D, Crystal Structure Of The P1 Domain Of Chea From Salmonella
Typhimurium
Length = 146
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 203 GKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELV 255
G+ L TD + NLFL Q+ +D+ + D + YICNA +L
Sbjct: 79 GEXQLNTD----IINLFLETKDIXQEQLDAYKNSEEPDAASFEYICNALRQLA 127
>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|B Chain B, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|C Chain C, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
pdb|2D4A|D Chain D, Structure Of The Malate Dehydrogenase From Aeropyrum
Pernix
Length = 308
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
+ I+GAG GM+TAV L+ +G++ + +R+ G G +D E+G+ I N
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYDDLLLIARTP-GKPQGEALDLAHAAAELGVDIRISGSN 60
Query: 93 N 93
+
Sbjct: 61 S 61
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 23 PEHYGGPKLK--VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
PE + K K V I+GAG +G A L++ G+ V + ++ IGG +
Sbjct: 380 PEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 23 PEHYGGPKLK--VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
PE + K K V I+GAG +G A L++ G+ V + ++ IGG +
Sbjct: 380 PEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428
>pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2
System From Rhodopseudomonas Palustris
Length = 404
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV-----GSFIDKHGNHIEMGL 84
K V +IGAG G+ A +G EVD+ E + +V S+ H H G+
Sbjct: 142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYF--HDRHSGAGI 199
Query: 85 HIFFGC 90
+ +G
Sbjct: 200 RMHYGV 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,159,743
Number of Sequences: 62578
Number of extensions: 406072
Number of successful extensions: 1322
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 169
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)