BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023334
         (283 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5FIU2|MIAB_FLAJ1 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
           OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM
           2064 / UW101) GN=miaB PE=3 SV=1
          Length = 481

 Score = 34.3 bits (77), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 6/168 (3%)

Query: 115 VMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174
           V  SE +    VD+ Q L  +    P+    F T N   MH+ ++ +++    I K HI+
Sbjct: 239 VNASEMQKATAVDFDQLLEMVAVGFPKMRIRFSTSNPQDMHESILHVMAKYPNICK-HIH 297

Query: 175 TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPE---SQELLAKVKTVIEKPHNDH 231
               SG+N  +        R + + +I    ++   P+   SQ+++A   T  E+ H D 
Sbjct: 298 LPVQSGSNRILKEMNRLHSREEYMALI--DKIRAIVPDASISQDMIAGFPTETEQDHQDT 355

Query: 232 LPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 279
           + L+E  +     + S+ ++    A    +  +E   +A+ L++IV L
Sbjct: 356 MSLMEYVKYNFGYMYSYSERPGTLAGRKMKDDVEEETKARRLQEIVDL 403


>sp|A9KHY6|DAPA_CLOPH 4-hydroxy-tetrahydrodipicolinate synthase OS=Clostridium
           phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
           GN=dapA PE=3 SV=1
          Length = 294

 Score = 33.5 bits (75), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 107 SVVEGSGAVMVSEFKPVPDVDY--LQELLAIQ-QQGPRAIGFFGT--RNMGFMHQELIEI 161
           ++  G+G  +V+ FK   +V+Y  L EL+  Q   G  +I   GT   +    H+E IE 
Sbjct: 2   AIFTGAGVAIVTPFKENREVNYEKLGELIDFQINNGTDSIIICGTTGESSTLTHEEHIEC 61

Query: 162 LSYALVITKNHIYTSGASGTN 182
           + +A+  TK  +     +G+N
Sbjct: 62  IRFAIEYTKKRVPVIAGTGSN 82


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.133    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,305,742
Number of Sequences: 539616
Number of extensions: 4218021
Number of successful extensions: 10336
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 10333
Number of HSP's gapped (non-prelim): 5
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)