Query 023334
Match_columns 283
No_of_seqs 56 out of 58
Neff 1.9
Searched_HMMs 46136
Date Fri Mar 29 03:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023334.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023334hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02481 DNA_processg_A: DNA r 99.1 2.8E-09 6.1E-14 91.5 12.4 139 138-279 42-186 (212)
2 TIGR00732 dprA DNA protecting 98.4 7E-06 1.5E-10 71.4 13.5 136 141-280 45-187 (220)
3 TIGR00725 conserved hypothetic 97.6 0.00081 1.7E-08 56.0 10.4 121 141-281 2-122 (159)
4 PRK10736 hypothetical protein; 97.2 0.0081 1.7E-07 57.3 13.7 136 141-280 108-250 (374)
5 COG0758 Smf Predicted Rossmann 95.4 0.41 9E-06 45.6 13.1 166 88-279 76-252 (350)
6 PF06908 DUF1273: Protein of u 95.3 0.28 6E-06 42.3 10.7 140 141-282 2-168 (177)
7 TIGR00730 conserved hypothetic 92.6 0.37 8.1E-06 41.2 6.3 65 141-207 1-68 (178)
8 PRK13660 hypothetical protein; 91.1 10 0.00022 33.4 13.4 138 141-280 2-166 (182)
9 COG1611 Predicted Rossmann fol 85.5 3.4 7.4E-05 36.3 6.9 73 136-210 10-85 (205)
10 TIGR02668 moaA_archaeal probab 75.2 12 0.00026 32.8 6.8 39 128-168 45-83 (302)
11 cd01391 Periplasmic_Binding_Pr 68.7 41 0.0009 25.6 7.6 40 134-174 118-157 (269)
12 PRK09331 Sep-tRNA:Cys-tRNA syn 68.7 7.3 0.00016 35.2 4.2 48 143-192 54-101 (387)
13 PRK13361 molybdenum cofactor b 68.5 34 0.00074 31.0 8.3 73 134-214 56-130 (329)
14 COG1453 Predicted oxidoreducta 68.3 36 0.00077 33.9 9.0 115 154-270 32-165 (391)
15 PF13353 Fer4_12: 4Fe-4S singl 65.4 12 0.00025 28.5 4.1 58 126-185 38-100 (139)
16 TIGR02109 PQQ_syn_pqqE coenzym 62.3 48 0.001 29.8 8.0 72 136-215 50-122 (358)
17 PRK00164 moaA molybdenum cofac 60.7 34 0.00074 30.5 6.8 39 128-168 54-92 (331)
18 PF01408 GFO_IDH_MocA: Oxidore 58.2 25 0.00054 25.9 4.7 51 186-240 54-105 (120)
19 TIGR03278 methan_mark_10 putat 56.1 1.2E+02 0.0025 29.6 9.9 134 127-274 58-196 (404)
20 COG1313 PflX Uncharacterized F 55.8 20 0.00044 35.0 4.8 49 128-178 154-202 (335)
21 cd06450 DOPA_deC_like DOPA dec 55.5 55 0.0012 28.1 7.0 42 150-191 35-79 (345)
22 PRK05301 pyrroloquinoline quin 55.4 1.1E+02 0.0025 27.8 9.3 72 136-215 59-131 (378)
23 PF04055 Radical_SAM: Radical 55.0 49 0.0011 24.3 5.8 71 127-200 32-106 (166)
24 PLN03032 serine decarboxylase; 53.4 29 0.00063 32.8 5.4 76 126-204 35-118 (374)
25 cd01820 PAF_acetylesterase_lik 53.2 46 0.001 27.4 5.9 90 128-222 17-120 (214)
26 PF13580 SIS_2: SIS domain; PD 51.6 84 0.0018 25.0 7.0 106 157-279 23-135 (138)
27 cd06150 YjgF_YER057c_UK114_lik 47.9 8.2 0.00018 29.4 0.7 17 167-183 7-23 (105)
28 cd06452 SepCysS Sep-tRNA:Cys-t 47.6 28 0.00061 30.7 4.1 37 154-191 45-81 (361)
29 TIGR02326 transamin_PhnW 2-ami 46.5 71 0.0015 28.1 6.3 18 225-242 139-156 (363)
30 TIGR01706 NAPA periplasmic nit 46.4 48 0.001 34.0 6.0 37 119-155 115-156 (830)
31 PRK14338 (dimethylallyl)adenos 46.3 2.2E+02 0.0048 27.4 10.1 139 127-280 188-342 (459)
32 KOG2235 Uncharacterized conser 45.7 2.4 5.3E-05 44.5 -3.2 151 71-229 63-228 (776)
33 cd06660 Aldo_ket_red Aldo-keto 45.5 1.9E+02 0.0041 24.5 10.3 48 146-193 16-68 (285)
34 cd02951 SoxW SoxW family; SoxW 44.8 43 0.00093 25.3 4.2 33 127-159 1-34 (125)
35 PLN02951 Molybderin biosynthes 43.4 60 0.0013 30.5 5.8 41 128-170 95-135 (373)
36 cd01835 SGNH_hydrolase_like_3 43.1 82 0.0018 25.0 5.7 64 140-203 1-78 (193)
37 COG1104 NifS Cysteine sulfinat 43.0 18 0.0004 35.4 2.4 25 169-193 61-85 (386)
38 PRK10200 putative racemase; Pr 42.1 24 0.00052 30.9 2.8 28 122-149 98-126 (230)
39 PF01042 Ribonuc_L-PSP: Endori 42.0 10 0.00022 29.4 0.4 43 168-223 16-58 (121)
40 PF10686 DUF2493: Protein of u 41.2 98 0.0021 23.3 5.6 50 141-191 4-55 (71)
41 PF03807 F420_oxidored: NADP o 41.1 27 0.00059 25.1 2.5 35 241-276 54-89 (96)
42 PF05014 Nuc_deoxyrib_tr: Nucl 40.2 1.7E+02 0.0036 22.3 7.2 42 241-283 54-98 (113)
43 TIGR03470 HpnH hopanoid biosyn 40.2 2.2E+02 0.0049 25.9 8.7 40 134-175 67-106 (318)
44 TIGR02351 thiH thiazole biosyn 39.8 54 0.0012 30.5 4.8 42 126-167 105-148 (366)
45 PF02875 Mur_ligase_C: Mur lig 39.2 52 0.0011 24.0 3.8 58 120-178 20-80 (91)
46 TIGR03365 Bsubt_queE 7-cyano-7 39.1 99 0.0021 27.1 6.1 51 127-179 60-111 (238)
47 cd01425 RPS2 Ribosomal protein 38.3 1.3E+02 0.0029 25.7 6.6 46 139-190 55-103 (193)
48 cd06502 TA_like Low-specificit 38.2 50 0.0011 28.2 4.1 34 155-189 34-67 (338)
49 KOG1549 Cysteine desulfurase N 37.7 23 0.00049 35.4 2.2 28 168-195 101-128 (428)
50 COG3976 Uncharacterized protei 37.5 19 0.00042 31.3 1.5 46 155-229 90-135 (135)
51 TIGR03576 pyridox_MJ0158 pyrid 37.5 52 0.0011 30.1 4.3 40 153-192 54-94 (346)
52 TIGR01275 ACC_deam_rel pyridox 37.4 98 0.0021 27.5 5.9 51 153-204 39-90 (311)
53 PRK03910 D-cysteine desulfhydr 37.3 1E+02 0.0022 27.9 6.1 77 153-229 47-129 (331)
54 TIGR00035 asp_race aspartate r 36.6 27 0.00058 30.0 2.2 29 122-150 98-127 (229)
55 cd01537 PBP1_Repressors_Sugar_ 36.3 2.1E+02 0.0045 22.4 6.9 31 137-167 115-145 (264)
56 cd01542 PBP1_TreR_like Ligand- 36.3 2.2E+02 0.0047 22.9 7.2 66 137-205 111-181 (259)
57 TIGR00250 RNAse_H_YqgF RNAse H 35.5 1.5E+02 0.0031 24.3 6.2 76 137-225 4-79 (130)
58 cd00609 AAT_like Aspartate ami 35.3 1.4E+02 0.003 24.9 6.1 33 169-205 59-91 (350)
59 TIGR00696 wecB_tagA_cpsF bacte 34.9 3E+02 0.0064 23.7 8.3 78 120-203 28-109 (177)
60 cd00758 MoCF_BD MoCF_BD: molyb 34.9 52 0.0011 26.1 3.4 50 128-183 23-72 (133)
61 PRK09064 5-aminolevulinate syn 34.6 40 0.00087 30.3 3.1 22 223-244 183-207 (407)
62 COG0031 CysK Cysteine synthase 34.5 72 0.0016 30.3 4.8 57 155-218 43-105 (300)
63 TIGR00177 molyb_syn molybdenum 34.3 89 0.0019 25.2 4.7 50 128-183 31-80 (144)
64 PRK13532 nitrate reductase cat 33.8 1E+02 0.0022 31.7 6.0 38 119-156 115-157 (830)
65 PRK11064 wecC UDP-N-acetyl-D-m 33.7 1.3E+02 0.0028 28.6 6.4 29 140-175 3-31 (415)
66 COG3479 Phenolic acid decarbox 33.2 23 0.00049 31.7 1.2 17 223-239 97-119 (175)
67 COG1922 WecG Teichoic acid bio 33.1 2.1E+02 0.0046 26.7 7.5 76 121-202 89-169 (253)
68 cd06286 PBP1_CcpB_like Ligand- 32.9 2.6E+02 0.0057 22.5 7.2 36 135-170 109-144 (260)
69 TIGR00423 radical SAM domain p 32.9 94 0.002 27.9 5.1 37 128-164 41-77 (309)
70 TIGR00124 cit_ly_ligase [citra 32.9 55 0.0012 30.8 3.8 37 123-160 121-160 (332)
71 cd06267 PBP1_LacI_sugar_bindin 32.9 2.4E+02 0.0052 22.1 7.4 34 137-170 113-146 (264)
72 PRK13762 tRNA-modifying enzyme 32.6 2.7E+02 0.0059 25.8 8.2 68 140-217 130-198 (322)
73 PF09314 DUF1972: Domain of un 32.6 60 0.0013 28.5 3.7 37 141-177 2-43 (185)
74 PF11868 DUF3388: Protein of u 32.5 58 0.0013 29.8 3.7 89 126-228 42-144 (192)
75 TIGR02666 moaA molybdenum cofa 32.0 1.1E+02 0.0025 27.3 5.5 41 128-170 48-88 (334)
76 COG0816 Predicted endonuclease 32.0 2E+02 0.0043 24.6 6.6 80 138-229 9-88 (141)
77 PLN02778 3,5-epimerase/4-reduc 31.8 1.3E+02 0.0028 26.5 5.7 54 138-197 7-60 (298)
78 cd01494 AAT_I Aspartate aminot 31.5 70 0.0015 23.6 3.4 32 169-204 17-48 (170)
79 cd06207 CyPoR_like NADPH cytoc 31.4 2.4E+02 0.0051 26.2 7.5 62 128-189 280-349 (382)
80 PF00994 MoCF_biosynth: Probab 31.0 64 0.0014 25.5 3.4 50 128-183 21-70 (144)
81 PRK13520 L-tyrosine decarboxyl 30.9 90 0.002 27.1 4.5 38 154-191 60-98 (371)
82 cd01937 ribokinase_group_D Rib 30.8 44 0.00095 27.8 2.5 48 142-202 1-48 (254)
83 PF03808 Glyco_tran_WecB: Glyc 30.4 3.2E+02 0.0069 22.7 8.3 77 121-203 29-110 (172)
84 cd00561 CobA_CobO_BtuR ATP:cor 30.3 47 0.001 28.4 2.6 74 172-246 6-113 (159)
85 PF01972 SDH_sah: Serine dehyd 30.2 98 0.0021 29.7 5.0 68 136-204 45-127 (285)
86 cd06155 eu_AANH_C_1 A group of 30.0 33 0.00071 26.1 1.5 14 169-182 6-19 (101)
87 PF09743 DUF2042: Uncharacteri 30.0 13 0.00029 34.1 -0.7 112 77-192 66-188 (272)
88 PRK06256 biotin synthase; Vali 29.7 2.8E+02 0.0061 24.9 7.5 65 127-192 95-161 (336)
89 PRK03321 putative aminotransfe 29.6 52 0.0011 28.8 2.8 20 171-190 76-95 (352)
90 PRK02769 histidine decarboxyla 29.1 81 0.0018 29.6 4.2 49 154-204 66-117 (380)
91 PLN03075 nicotianamine synthas 29.1 1.4E+02 0.0031 28.1 5.8 27 130-156 111-140 (296)
92 cd00615 Orn_deC_like Ornithine 29.0 84 0.0018 27.4 4.0 20 158-177 87-106 (294)
93 TIGR02493 PFLA pyruvate format 28.6 1.2E+02 0.0025 25.5 4.7 48 128-177 51-103 (235)
94 cd00885 cinA Competence-damage 28.3 74 0.0016 26.9 3.5 50 128-183 23-72 (170)
95 smart00852 MoCF_biosynth Proba 28.2 71 0.0015 25.0 3.2 47 128-182 22-70 (135)
96 COG5039 Exopolysaccharide bios 28.1 1.7E+02 0.0036 29.0 6.2 67 128-225 74-144 (339)
97 PRK08133 O-succinylhomoserine 28.0 1.2E+02 0.0026 28.1 5.0 21 223-243 151-174 (390)
98 PRK13392 5-aminolevulinate syn 28.0 63 0.0014 29.3 3.2 21 224-244 184-207 (410)
99 PLN02822 serine palmitoyltrans 27.9 60 0.0013 31.2 3.2 47 144-191 142-191 (481)
100 PF12308 Noelin-1: Neurogenesi 27.7 57 0.0012 27.3 2.6 32 192-223 14-52 (101)
101 PRK09288 purT phosphoribosylgl 27.7 3E+02 0.0066 24.8 7.4 29 139-174 11-39 (395)
102 TIGR01822 2am3keto_CoA 2-amino 27.4 1.2E+02 0.0026 26.8 4.8 46 146-192 73-121 (393)
103 TIGR03812 tyr_de_CO2_Arch tyro 27.4 85 0.0019 27.4 3.8 51 153-204 59-113 (373)
104 cd00408 DHDPS-like Dihydrodipi 27.1 4.2E+02 0.0091 23.0 11.0 119 128-256 20-157 (281)
105 PRK08361 aspartate aminotransf 26.3 79 0.0017 28.4 3.5 21 156-176 103-123 (391)
106 PRK05406 LamB/YcsF family prot 26.1 62 0.0013 30.1 2.8 59 146-205 72-148 (246)
107 PF10727 Rossmann-like: Rossma 26.0 84 0.0018 25.8 3.3 32 136-174 6-37 (127)
108 PTZ00254 40S ribosomal protein 25.8 1.7E+02 0.0037 27.3 5.6 73 132-240 65-140 (249)
109 PRK14072 6-phosphofructokinase 25.6 34 0.00074 33.1 1.2 18 173-191 8-27 (416)
110 PRK07324 transaminase; Validat 25.6 63 0.0014 29.1 2.8 22 170-191 81-102 (373)
111 COG1794 RacX Aspartate racemas 25.4 48 0.001 30.9 2.0 52 121-204 97-149 (230)
112 PF03721 UDPG_MGDP_dh_N: UDP-g 25.4 81 0.0018 26.8 3.2 42 141-192 1-42 (185)
113 cd00009 AAA The AAA+ (ATPases 25.3 2.4E+02 0.0053 19.7 7.6 118 136-255 15-149 (151)
114 KOG4435 Predicted lipid kinase 25.2 92 0.002 32.1 4.0 57 143-205 95-152 (535)
115 cd01829 SGNH_hydrolase_peri2 S 25.2 1.9E+02 0.0041 23.0 5.1 58 142-202 1-67 (200)
116 PRK00977 exodeoxyribonuclease 25.2 53 0.0011 25.4 1.9 38 214-251 13-52 (80)
117 cd06287 PBP1_LacI_like_8 Ligan 25.2 4.2E+02 0.0091 22.4 7.6 37 134-170 112-148 (269)
118 PF14838 INTS5_C: Integrator c 25.0 19 0.00041 37.8 -0.7 34 209-242 272-306 (696)
119 TIGR02667 moaB_proteo molybden 24.9 91 0.002 26.1 3.4 46 135-183 31-77 (163)
120 cd02750 MopB_Nitrate-R-NarG-li 24.7 1.5E+02 0.0032 28.1 5.0 41 119-159 81-127 (461)
121 PF03059 NAS: Nicotianamine sy 24.6 70 0.0015 29.8 2.9 30 130-159 108-140 (276)
122 cd02762 MopB_1 The MopB_1 CD i 24.4 1.9E+02 0.0041 27.8 5.8 24 126-149 75-100 (539)
123 PLN03083 E3 UFM1-protein ligas 24.2 29 0.00063 37.1 0.4 109 80-192 73-191 (803)
124 PRK14328 (dimethylallyl)adenos 23.9 5.6E+02 0.012 24.4 8.7 134 127-274 180-327 (439)
125 PRK03604 moaC bifunctional mol 23.9 81 0.0018 29.8 3.2 51 128-183 179-229 (312)
126 cd06359 PBP1_Nba_like Type I p 23.8 2.7E+02 0.0059 24.0 6.2 64 136-203 130-195 (333)
127 PRK09613 thiH thiamine biosynt 23.8 1.4E+02 0.0031 29.6 5.0 41 126-166 117-159 (469)
128 COG1669 Predicted nucleotidylt 23.8 62 0.0014 26.5 2.2 16 133-148 16-32 (97)
129 cd02763 MopB_2 The MopB_2 CD i 23.7 1.7E+02 0.0038 30.1 5.7 54 119-177 69-126 (679)
130 COG0318 CaiC Acyl-CoA syntheta 23.5 78 0.0017 29.9 3.0 20 172-191 176-208 (534)
131 PRK11565 dkgA 2,5-diketo-D-glu 23.5 4.9E+02 0.011 23.0 7.8 43 147-192 21-63 (275)
132 PF13241 NAD_binding_7: Putati 23.4 1.3E+02 0.0028 22.8 3.7 86 167-279 4-90 (103)
133 PRK03670 competence damage-ind 23.3 87 0.0019 28.5 3.2 32 151-182 42-73 (252)
134 cd01822 Lysophospholipase_L1_l 23.3 2.3E+02 0.0049 21.8 5.1 33 170-202 36-72 (177)
135 PF13377 Peripla_BP_3: Peripla 22.9 2.3E+02 0.0051 21.2 5.0 26 135-160 4-30 (160)
136 PRK14336 (dimethylallyl)adenos 22.9 4.9E+02 0.011 24.8 8.1 135 127-274 157-304 (418)
137 PF00175 NAD_binding_1: Oxidor 22.7 1.4E+02 0.0031 21.4 3.7 58 128-185 41-107 (109)
138 cd00886 MogA_MoaB MogA_MoaB fa 22.5 1.1E+02 0.0024 24.8 3.4 32 152-183 43-75 (152)
139 PRK12583 acyl-CoA synthetase; 22.3 90 0.002 28.4 3.1 10 172-181 206-215 (558)
140 COG0205 PfkA 6-phosphofructoki 22.2 53 0.0011 31.6 1.7 19 173-192 7-27 (347)
141 PF13733 Glyco_transf_7N: N-te 22.0 28 0.00061 29.9 -0.2 10 254-263 114-123 (136)
142 PF00365 PFK: Phosphofructokin 22.0 46 0.001 30.4 1.2 26 141-166 1-27 (282)
143 TIGR01274 ACC_deam 1-aminocycl 22.0 3.2E+02 0.0068 24.9 6.5 51 156-206 52-102 (337)
144 cd06221 sulfite_reductase_like 21.7 1.3E+02 0.0029 25.9 3.9 21 169-189 189-209 (253)
145 PF02609 Exonuc_VII_S: Exonucl 21.7 53 0.0012 23.1 1.2 35 216-250 4-40 (53)
146 PRK12570 N-acetylmuramic acid- 21.7 4.8E+02 0.01 24.1 7.7 33 246-278 125-158 (296)
147 cd00594 KU Ku-core domain; inc 21.7 35 0.00075 29.6 0.3 89 106-207 60-164 (272)
148 KOG2174 Leptin receptor gene-r 21.5 51 0.0011 28.7 1.3 44 128-175 65-110 (131)
149 cd00368 Molybdopterin-Binding 21.2 2.8E+02 0.0062 24.3 5.8 58 119-178 67-129 (374)
150 PRK03244 argD acetylornithine 21.0 1.1E+02 0.0024 27.5 3.3 31 223-253 188-226 (398)
151 cd00616 AHBA_syn 3-amino-5-hyd 20.9 1.5E+02 0.0032 25.5 4.0 19 225-243 113-131 (352)
152 PRK07777 aminotransferase; Val 20.9 69 0.0015 28.6 2.1 18 159-176 98-115 (387)
153 PF14734 DUF4469: Domain of un 20.9 63 0.0014 26.1 1.6 31 178-208 46-76 (102)
154 PLN02587 L-galactose dehydroge 20.8 6E+02 0.013 22.6 11.3 39 154-192 29-69 (314)
155 cd06152 YjgF_YER057c_UK114_lik 20.7 53 0.0012 25.9 1.2 15 168-182 8-22 (114)
156 PF06506 PrpR_N: Propionate ca 20.6 94 0.002 25.7 2.6 36 126-162 64-99 (176)
157 PRK14489 putative bifunctional 20.5 2.5E+02 0.0055 26.1 5.7 51 123-175 181-238 (366)
158 PF13884 Peptidase_S74: Chaper 20.4 58 0.0012 22.5 1.2 17 146-162 40-56 (58)
159 cd06200 SiR_like1 Cytochrome p 20.4 5.5E+02 0.012 22.1 7.4 63 128-190 154-223 (245)
160 PRK00950 histidinol-phosphate 20.3 93 0.002 27.2 2.7 45 128-177 74-118 (361)
161 TIGR00089 RNA modification enz 20.3 7.2E+02 0.016 23.3 8.6 135 127-274 172-319 (429)
162 PRK04020 rps2P 30S ribosomal p 20.2 3.7E+02 0.0081 24.2 6.5 69 138-240 65-136 (204)
163 cd06201 SiR_like2 Cytochrome p 20.1 4.5E+02 0.0097 23.4 6.9 63 128-190 198-265 (289)
No 1
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=99.05 E-value=2.8e-09 Score=91.47 Aligned_cols=139 Identities=22% Similarity=0.193 Sum_probs=96.1
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHH
Q 023334 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQEL 216 (283)
Q Consensus 138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-Qp~ESqel 216 (283)
.-.+.|||.|||++.=-..+..+-+.+.|+..|..|++.+|.|+.+++.+|||++ +...+ +|||..|++ .|.|.+++
T Consensus 42 ~~~~~iaIvGsR~~s~~g~~~a~~l~~~l~~~g~~vvSGlA~GiD~~ah~~al~~-~g~tI-aVl~~gl~~~yP~~n~~l 119 (212)
T PF02481_consen 42 NKQPSIAIVGSRNPSEYGLKFAKKLARELAKAGIVVVSGLAKGIDAAAHRGALDA-GGPTI-AVLACGLDNIYPKENREL 119 (212)
T ss_dssp GGS-EEEEE--SS--HHHHHHHHHHHHHHHHHT-EEEE---TTHHHHHHHHHTTT----EE-EE-SS-TTS-SSGGGHHH
T ss_pred ccCceEEEEcCCCCCHHHHHHHHHHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHc-cCCEE-EEECCCcccccchhhHHH
Confidence 3478999999999999999999999999999999999999999999999999999 44444 457999987 59999999
Q ss_pred HHHHh-h----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEE
Q 023334 217 LAKVK-T----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 279 (283)
Q Consensus 217 Le~V~-h----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTL 279 (283)
.+++. + +=|-|-... +....-.-.|+=|..-++.+|.......---+.|++.|.+++|-|-.
T Consensus 120 ~~~i~~~~glliSe~~p~~~-~~~~~f~~RNRiiaaLs~~~vvvea~~~sGt~~ta~~A~~~gr~v~~ 186 (212)
T PF02481_consen 120 AERILDEGGLLISEYPPGTK-PSRWRFPERNRIIAALSDAVVVVEAGEKSGTLHTARFALEQGRPVFA 186 (212)
T ss_dssp HHHHHHTT-EEEE-S-TT-----TTHHHHHHHHHHHH-S-EEE----TT-THHHHHHHHHHHT--EEE
T ss_pred HHHHHhcCcEEEeCCCCCCC-cccccChHHHHHHHHhCCeEEEEecCCCChHHHHHHHHHHcCCeEEE
Confidence 99998 4 446565544 55666667899999999999999987777778999999999997754
No 2
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=98.42 E-value=7e-06 Score=71.36 Aligned_cols=136 Identities=20% Similarity=0.193 Sum_probs=109.4
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-ChhHHHHHHH
Q 023334 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-PPESQELLAK 219 (283)
Q Consensus 141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQ-p~ESqelLe~ 219 (283)
+.|||.|||+..--...+.+-+++.|+..|-.|++-||-|+-+++.|||+.+.. .--.|||..|++- |.|.+++.++
T Consensus 45 ~~iaIvGsR~~s~~~~~~a~~l~~~l~~~g~~IVSG~A~GiD~~ah~~al~~~g--~tIaVl~~gld~~yp~~n~~l~~~ 122 (220)
T TIGR00732 45 RKVAIVGTRRPTKYGERWTRKLAEELAKNGVTIVSGLALGIDGIAHKAALKVNG--RTIAVLGTGLDQIYPRQNSKLAAK 122 (220)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHHhCCCEEEcCchhhHHHHHHHHHHHcCC--CEEEEECCCCccCCchhhHHHHHH
Confidence 789999999998889999999999999999999999999999999999999832 3335899999886 7889999998
Q ss_pred Hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEee-CchHHHHHHHHHHhccCeeEEe
Q 023334 220 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF 280 (283)
Q Consensus 220 V~h-----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVTLf 280 (283)
+.. +=|-|...+ |....-..-|+=|..-++-+|-+--= .|-| |.|++.|.+++|-|-.+
T Consensus 123 i~~~gglliSe~p~~~~-~~~~~f~~RNriia~ls~~vivve~~~~sGt-l~ta~~A~~~gr~v~~~ 187 (220)
T TIGR00732 123 IAENGGLLLSEYPPDTK-PIKYNFPKRNRIISGLSRAVLVVEAPLKSGA-LITARYALEQGREVFAY 187 (220)
T ss_pred HHHcCCEEEEecCCCCC-CCcccHHHHHHHHHHhcCEEEEEECCCCCch-HHHHHHHHHhCCcEEEE
Confidence 863 446666443 44444456788888888888877653 4656 57899999999977543
No 3
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=97.60 E-value=0.00081 Score=55.96 Aligned_cols=121 Identities=22% Similarity=0.184 Sum_probs=86.6
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHH
Q 023334 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKV 220 (283)
Q Consensus 141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V 220 (283)
++||++|||+.+=-+++..+-+.+.|+..|+.|++=|+.|.=.|+-|||+++ ... ..=|||+.+.. +.+ .+
T Consensus 2 ~~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~Gg~~GlM~a~a~ga~~~-gg~-viGVlp~~l~~-~~~---~~--- 72 (159)
T TIGR00725 2 VQIGVIGSSNKSEELYEIAYRLGKELAKKGHILINGGRTGVMEAVSKGAREA-GGL-VVGILPDEDFA-GNP---YL--- 72 (159)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEcCCchhHHHHHHHHHHHC-CCe-EEEECChhhcc-CCC---Cc---
Confidence 7899999999988999999999999999999999988899999999999988 332 23368988741 100 00
Q ss_pred hhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEEee
Q 023334 221 KTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTLFY 281 (283)
Q Consensus 221 ~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTLfY 281 (283)
.++.. .+.+ ..| |+-++..+|=+|.+- -=+=||-|.. +|-.++|-|-+++
T Consensus 73 -~~~i~--~~~~----~~R--k~~m~~~sda~Ivlp-GG~GTL~E~~-~a~~~~kpv~~l~ 122 (159)
T TIGR00725 73 -TIKVK--TGMN----FAR--NFILVRSADVVVSVG-GGYGTAIEIL-GAYALGGPVVVLR 122 (159)
T ss_pred -eEEEE--CCCc----chH--HHHHHHHCCEEEEcC-CchhHHHHHH-HHHHcCCCEEEEE
Confidence 00011 1111 113 888999999999987 4566766655 4555788776653
No 4
>PRK10736 hypothetical protein; Provisional
Probab=97.24 E-value=0.0081 Score=57.25 Aligned_cols=136 Identities=19% Similarity=0.170 Sum_probs=104.8
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-CChhHHHHHHH
Q 023334 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-QPPESQELLAK 219 (283)
Q Consensus 141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-Qp~ESqelLe~ 219 (283)
+.|||.|||++.---....+-+++.|+..|-.|+.-+|-|.-+++-+|||.+..+ --.||+-.|++ -|+|.+++.++
T Consensus 108 ~~iaiVGsR~~s~yg~~~~~~l~~~la~~g~~IVSGlA~GiD~~AH~~aL~~~g~--TIaVlg~Gld~~YP~~n~~L~~~ 185 (374)
T PRK10736 108 PQLAVVGSRAHSWYGERWGRLFCEELAKNGLTITSGLARGIDGVAHRAALQAGGK--TIAVLGNGLENIYPRRHARLAES 185 (374)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECcchhhHHHHHHHHHHHcCCC--EEEEECCCCCccCCHhHHHHHHH
Confidence 6799999999999999999999999999887666666899999999999998432 34488999987 58899999999
Q ss_pred Hhh-----HhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEee-CchHHHHHHHHHHhccCeeEEe
Q 023334 220 VKT-----VIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTLF 280 (283)
Q Consensus 220 V~h-----lVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVTLf 280 (283)
+.. +=|-|-+-+ |...-=-..|+=|-.-++-+|-.--- .|-+ |-|++.|-+++|-|--+
T Consensus 186 I~~~~G~liSEyp~~~~-p~~~~Fp~RNRIIagLS~~viVvEA~~kSGs-liTA~~Al~~gR~Vfav 250 (374)
T PRK10736 186 IIEQGGALVSEFPLDTP-PLAANFPRRNRIISGLSKGVLVVEAALRSGS-LVTARCALEQGRDVFAL 250 (374)
T ss_pred HHhcCCEEEECCCCCCC-CChhhhhHhhhHHHHhCCeEEEEEeCCCCch-HHHHHHHHHhCCeEEEE
Confidence 833 346665532 22333334688888888888776544 4554 66999999999987543
No 5
>COG0758 Smf Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=95.38 E-value=0.41 Score=45.59 Aligned_cols=166 Identities=19% Similarity=0.195 Sum_probs=118.8
Q ss_pred cccccCCccccCCCCccchhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHH
Q 023334 88 IGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALV 167 (283)
Q Consensus 88 ~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALv 167 (283)
..+++.+++ +-|..-..+-..|..+-.+. ++|++.+ +.+||+|||+++-.-.+..+.++..|+
T Consensus 76 ~~~i~~~d~---~YP~~Lk~i~~pP~vLf~kG-----nl~ll~~---------~~vaIVGsR~~S~~g~~~~~~~a~~L~ 138 (350)
T COG0758 76 IKIITLGDE---DYPKLLKEINDPPPVLFYKG-----NLDLLEA---------PSVAIVGSRKPSKYGLDYTRDLAEYLA 138 (350)
T ss_pred CeEeccCCc---cchHHHHhccCCCeEEEEec-----CHhHhcc---------CceEEEeCCCCCHhHHHHHHHHHHHHH
Confidence 345555555 56776666655554444333 2344432 789999999999999999999999999
Q ss_pred hhCCeeeecCCCCchHHHHHhhhhhcCCCceeE-eecccccCC-ChhHHHHHHHHhhH----hcCC-----CCCCCChHH
Q 023334 168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQSLKKQ-PPESQELLAKVKTV----IEKP-----HNDHLPLIE 236 (283)
Q Consensus 168 l~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTV-iLPQSL~kQ-p~ESqelLe~V~hl----VE~P-----eND~LpL~e 236 (283)
..|--|++-+|-|.-+++-.+||.+. -.|| ||.-.+++= |++-+.+.+++..- =|.| ..-+.|-
T Consensus 139 ~~g~~IvSGlA~GID~~AH~aaL~~~---G~TiaVl~~Gld~iYP~~n~~l~~~i~~~g~liSEypp~~~p~~~~Fp~-- 213 (350)
T COG0758 139 QNGITIVSGLARGIDTEAHKAALNAG---GKTIAVLATGLDKIYPRENIKLAEKIAENGLLISEYPPDTEPNKGNFPR-- 213 (350)
T ss_pred hCCeEEEecCcceecHHHHHHHHHcC---CcEEEEEcCCCCccCChhhHHHHHHHHhcCeEEeecCCCCCcccccchH--
Confidence 99999999999999999999999994 3465 667777764 66777777776542 1443 3334432
Q ss_pred HHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhccCeeEE
Q 023334 237 ASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLRKIVTL 279 (283)
Q Consensus 237 AS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~KiVTL 279 (283)
=|+=|-.-++=+++.-.=.--==|-||+.|-+|++.|-.
T Consensus 214 ----RNRiIagLS~gvlVvEA~~kSGSLiTA~~AleqgR~Vfa 252 (350)
T COG0758 214 ----RNRLIAGLSDGVLVVEAGLKSGSLITAKYALEQGRDVFA 252 (350)
T ss_pred ----HHHHHHHhcCceEEEecCcccccHHHHHHHHHcCCeeEE
Confidence 377777788888887544333335689999999998753
No 6
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=95.29 E-value=0.28 Score=42.27 Aligned_cols=140 Identities=18% Similarity=0.153 Sum_probs=74.0
Q ss_pred ceEEEeccccc------------chhHHHHHHHHHHHHHhhCCeeeecCCCCchH--HHHHhhhhhcCCCc-eeEeeccc
Q 023334 141 RAIGFFGTRNM------------GFMHQELIEILSYALVITKNHIYTSGASGTNA--AVIRGALRAERPDL-LTVILPQS 205 (283)
Q Consensus 141 rrIa~lGsRhv------------p~~hq~LIEllsyALvl~gNhi~TSGA~GTNA--AvIRGaLrAe~P~l-LTViLPQS 205 (283)
|+|+|-|-|.. .++-..|-+.+..++-.+=-++||+||-|+-. |-+--.|+.+-|++ |.+++|=
T Consensus 2 ~~~~~TGyR~~eL~~f~~~~~~~~~ik~~L~~~i~~lie~G~~~fi~GgalG~D~waae~vl~LK~~yp~ikL~~v~Pf- 80 (177)
T PF06908_consen 2 KRCCFTGYRPYELGIFNEKDPKIQVIKKALKKQIIELIEEGVRWFITGGALGVDLWAAEVVLELKKEYPEIKLALVLPF- 80 (177)
T ss_dssp -EEEEEE--GGGGT--SS--HHHHHHHHHHHHHHHHHHTTT--EEEE---TTHHHHHHHHHHTTTTT-TT-EEEEEESS-
T ss_pred eEEEEEecChhhcCCCCCCchhHHHHHHHHHHHHHHHHHCCCCEEEECCcccHHHHHHHHHHHHHhhhhheEEEEEEcc-
Confidence 56777776644 22445555555555666677999999999864 44555677888865 6677773
Q ss_pred ccCC----ChhHHHHHHHHhhHhc---CCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchH-HHHHHHHHHhc----
Q 023334 206 LKKQ----PPESQELLAKVKTVIE---KPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL-LMETCQEAKNL---- 273 (283)
Q Consensus 206 L~kQ----p~ESqelLe~V~hlVE---~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~t-LLetC~eAe~~---- 273 (283)
+.| +++.|+.+.+++.-.. .-.++.--=+..-+-.|+-+|.++|.+|++=--+.+- ---+++.|+.+
T Consensus 81 -~~q~~~W~~~~q~~y~~il~~aD~v~~vs~~~Y~~~~~~~~rn~fMvdhsd~~iavyD~~~~G~t~~~~~~a~~~~~~~ 159 (177)
T PF06908_consen 81 -ENQGNNWNEANQERYQSILEQADFVVVVSERPYYSPGQLQKRNRFMVDHSDGLIAVYDGEPEGGTKYTVRAAKKYQEQK 159 (177)
T ss_dssp -B-TTTTS-HHHHHHHHHHHHH-SEEEESSSSB---HHHHHHHHHHHHHHSSEEEEE--TTT--TTHHHHHHHHHHHHHH
T ss_pred -cchhhcCCHHHHHHHHHHHHhCCEEEEccCCCCCCHHHHHHHhHHHHhCCCeEEEEEeCCCCCcchHHHHHHHHHhhcc
Confidence 334 5688988888864322 1222212235666789999999999999987666531 12233444443
Q ss_pred cCeeEEeec
Q 023334 274 RKIVTLFYL 282 (283)
Q Consensus 274 ~KiVTLfYf 282 (283)
+..+.++-+
T Consensus 160 ~y~i~~I~~ 168 (177)
T PF06908_consen 160 GYPIDLIDP 168 (177)
T ss_dssp ---EEEE-H
T ss_pred CCeEEEecH
Confidence 345555444
No 7
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=92.61 E-value=0.37 Score=41.17 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=50.7
Q ss_pred ceEEEecccccchh--HHHHHHHHHHHHHhhCCeeeecCC-CCchHHHHHhhhhhcCCCceeEeeccccc
Q 023334 141 RAIGFFGTRNMGFM--HQELIEILSYALVITKNHIYTSGA-SGTNAAVIRGALRAERPDLLTVILPQSLK 207 (283)
Q Consensus 141 rrIa~lGsRhvp~~--hq~LIEllsyALvl~gNhi~TSGA-~GTNAAvIRGaLrAe~P~lLTViLPQSL~ 207 (283)
|+||++|+-..+.- +.+..+-+.+.|+..|+.++|-|+ .|.=-||-|||+++. - ...=|+|+.|.
T Consensus 1 ~~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GGg~~GlM~a~a~ga~~~g-G-~viGi~p~~l~ 68 (178)
T TIGR00730 1 KTVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGGGRVGLMGAIADAAMENG-G-TAVGVNPSGLF 68 (178)
T ss_pred CEEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCChHhHHHHHHHHHHhcC-C-eEEEecchhhh
Confidence 58999988665433 445677789999999999999997 899999999998873 2 23347888774
No 8
>PRK13660 hypothetical protein; Provisional
Probab=91.06 E-value=10 Score=33.37 Aligned_cols=138 Identities=20% Similarity=0.181 Sum_probs=87.2
Q ss_pred ceEEEecccccch------------hHHHHHHHHHHHHHhhCCeeeecCCCCch--HHHHHhhhhhcCCCc-eeEeeccc
Q 023334 141 RAIGFFGTRNMGF------------MHQELIEILSYALVITKNHIYTSGASGTN--AAVIRGALRAERPDL-LTVILPQS 205 (283)
Q Consensus 141 rrIa~lGsRhvp~------------~hq~LIEllsyALvl~gNhi~TSGA~GTN--AAvIRGaLrAe~P~l-LTViLPQS 205 (283)
++++|-|-|...+ +-..|-+-|..++-.+=-++||+||-|+- ||=+--.|+.+-|++ |-+++|=.
T Consensus 2 k~~~~TGyR~~el~~f~~~dp~~~~IK~aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~ 81 (182)
T PRK13660 2 KRLLVTGYKSFELGIFKDKDPKIKYIKKAIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFE 81 (182)
T ss_pred eEEEEeccCcccCCCccccChhhHHHHHHHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCcc
Confidence 5788888888877 33333334444444555789999999986 455566678877886 66677732
Q ss_pred c--cCCChhHHHHHHHHhhHhc---CCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchH---HHHHHHHHHhc----
Q 023334 206 L--KKQPPESQELLAKVKTVIE---KPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRL---LMETCQEAKNL---- 273 (283)
Q Consensus 206 L--~kQp~ESqelLe~V~hlVE---~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~t---LLetC~eAe~~---- 273 (283)
= ++=.++.|+.+.++++-+. .=....-.=+.--+.=|+-+|.++|-+|+| -|.+. .--+.+.|+..
T Consensus 82 ~q~~~W~e~~q~~y~~i~~~aD~v~~vs~~~y~~p~q~~~rn~fmv~~sd~~i~~--YD~e~~Ggt~y~~~~A~k~~~~~ 159 (182)
T PRK13660 82 EHGENWNEANQEKLANILKQADFVKSISKRPYESPAQFRQYNQFMLEHTDGALLV--YDEENEGSPKYFYEAAKKKQEKE 159 (182)
T ss_pred chhhcCCHHHHHHHHHHHHhCCEEEEecCCCCCChHHHHHHHHHHHHccCeEEEE--EcCCCCCChHHHHHHHHHhhhcc
Confidence 1 2336788888887755321 111111100333455699999999998875 45332 44677888877
Q ss_pred cCeeEEe
Q 023334 274 RKIVTLF 280 (283)
Q Consensus 274 ~KiVTLf 280 (283)
+.-|.++
T Consensus 160 ~y~i~~I 166 (182)
T PRK13660 160 DYPLDLI 166 (182)
T ss_pred CceEEEe
Confidence 7766655
No 9
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=85.45 E-value=3.4 Score=36.35 Aligned_cols=73 Identities=33% Similarity=0.302 Sum_probs=55.5
Q ss_pred HhcCCceEEEe-cccc--cchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCC
Q 023334 136 QQQGPRAIGFF-GTRN--MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQP 210 (283)
Q Consensus 136 Qq~G~rrIa~l-GsRh--vp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp 210 (283)
-+.|.+.|+++ ||.+ .+--..++-.-+.++++.-|.-|||-|..|+=.|+-|||+++ -...+=|+|.++..|-
T Consensus 10 ~~~~~~~i~V~~gs~~~~~~~~~~~~a~~lg~~la~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~~~~~e 85 (205)
T COG1611 10 LFIGIRQIVVICGSARGIEPEEYYELARELGRELAKRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGLLHEQE 85 (205)
T ss_pred cccCcceEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCCchhhc
Confidence 34567777765 4554 444356777788999999999999999999999999999965 3445557888877653
No 10
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=75.22 E-value=12 Score=32.81 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHh
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl 168 (283)
+.+.+..+...|.+.|.|.|.- |++|..++|++.++-..
T Consensus 45 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~iv~~l~~~ 83 (302)
T TIGR02668 45 IERIVRVASEFGVRKVKITGGE--PLLRKDLIEIIRRIKDY 83 (302)
T ss_pred HHHHHHHHHHcCCCEEEEECcc--cccccCHHHHHHHHHhC
Confidence 4444445567899999999954 99999999999987654
No 11
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=68.74 E-value=41 Score=25.57 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=29.7
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeee
Q 023334 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174 (283)
Q Consensus 134 aIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~ 174 (283)
.+.++|.++|+++++..- -..+..++.+..++...|-.+.
T Consensus 118 ~l~~~~~~~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (269)
T cd01391 118 YLAEKGWKRVALIYGDDG-AYGRERLEGFKAALKKAGIEVV 157 (269)
T ss_pred HHHHhCCceEEEEecCCc-chhhHHHHHHHHHHHhcCcEEE
Confidence 357778999999998776 4567778888888877654443
No 12
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=68.74 E-value=7.3 Score=35.22 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=36.6
Q ss_pred EEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 143 IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 143 Ia~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
.+-+|..+.| .|.++-|.++..+-. .+-++|+|++..|.++|++.++.
T Consensus 54 ~~~~~~~~~~-~~~~l~~~lA~~~g~-~~~~~~~g~t~a~~~al~~l~~~ 101 (387)
T PRK09331 54 PGRLDQIKKP-PIADFHEDLAEFLGM-DEARVTHGAREGKFAVMHSLCKK 101 (387)
T ss_pred ccccccccCh-HHHHHHHHHHHHhCC-CcEEEeCCHHHHHHHHHHHhcCC
Confidence 3455555666 488888888887654 57889999999999999998654
No 13
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=68.54 E-value=34 Score=30.98 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhC--CeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCCh
Q 023334 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK--NHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPP 211 (283)
Q Consensus 134 aIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g--Nhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ 211 (283)
.+-..|.+.|-|.|.- |++|..++|++.|+-...| .--+|+.++-.+ - .--.|....-+.+.| ||+--.+
T Consensus 56 ~~~~~Gv~~I~~tGGE--Pllr~dl~~li~~i~~~~~l~~i~itTNG~ll~-~-~~~~L~~aGl~~v~I----SlDs~~~ 127 (329)
T PRK13361 56 AFTELGVRKIRLTGGE--PLVRRGCDQLVARLGKLPGLEELSLTTNGSRLA-R-FAAELADAGLKRLNI----SLDTLRP 127 (329)
T ss_pred HHHHCCCCEEEEECcC--CCccccHHHHHHHHHhCCCCceEEEEeChhHHH-H-HHHHHHHcCCCeEEE----EeccCCH
Confidence 3445799999999965 9999999999999876655 222343333222 1 222333334455555 5555444
Q ss_pred hHH
Q 023334 212 ESQ 214 (283)
Q Consensus 212 ESq 214 (283)
|..
T Consensus 128 e~~ 130 (329)
T PRK13361 128 ELF 130 (329)
T ss_pred HHh
Confidence 443
No 14
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=68.35 E-value=36 Score=33.90 Aligned_cols=115 Identities=21% Similarity=0.231 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHHhhCCeeeecCCC--CchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhh-HhcCCCCC
Q 023334 154 MHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKT-VIEKPHND 230 (283)
Q Consensus 154 ~hq~LIEllsyALvl~gNhi~TSGA~--GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V~h-lVE~PeND 230 (283)
--+.+.+++.|||..+=|||=|-=.= |...-.++=||.. .+ .=+|.|---|---|-++++..++..+ -+|+=.-|
T Consensus 32 d~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~-~~-Rekv~LaTKlp~~~~~~~edm~r~fneqLekl~~D 109 (391)
T COG1453 32 DEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKD-GY-REKVKLATKLPSWPVKDREDMERIFNEQLEKLGTD 109 (391)
T ss_pred cHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhh-cc-cceEEEEeecCCccccCHHHHHHHHHHHHHHhCCc
Confidence 57889999999999999999998775 8888888888876 44 44444433333344455555555443 34555556
Q ss_pred CCChHHHHhhhh-----------HHHHhhhce-----eeEEEeeCchHHHHHHHHH
Q 023334 231 HLPLIEASRLCN-----------MDIISHVQQ-----VICFAFHDSRLLMETCQEA 270 (283)
Q Consensus 231 ~LpL~eAS~lCN-----------~eIIsrcqQ-----lICFAFHDS~tLLetC~eA 270 (283)
++-.-----|=+ -|.+.+.+| -+.|.||||-.++...-.|
T Consensus 110 y~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~~iv~a 165 (391)
T COG1453 110 YIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFKEIVDA 165 (391)
T ss_pred hhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHHHHHhc
Confidence 554322222212 233333332 4789999988777654333
No 15
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=65.37 E-value=12 Score=28.49 Aligned_cols=58 Identities=19% Similarity=0.281 Sum_probs=39.8
Q ss_pred hhHHHHH-HHHHhcCCceEEEecccccchh---HHHHHHHHHHHHHhhC-CeeeecCCCCchHHH
Q 023334 126 VDYLQEL-LAIQQQGPRAIGFFGTRNMGFM---HQELIEILSYALVITK-NHIYTSGASGTNAAV 185 (283)
Q Consensus 126 vD~lqEL-aaIQq~G~rrIa~lGsRhvp~~---hq~LIEllsyALvl~g-Nhi~TSGA~GTNAAv 185 (283)
.+.+.++ ..+++.+.+.|.|.|.- |++ ...+.|++.++--..+ ..++.+.++..+...
T Consensus 38 ~~~~~~ii~~~~~~~~~~i~l~GGE--Pll~~~~~~l~~i~~~~k~~~~~~~~~~tng~~~~~~~ 100 (139)
T PF13353_consen 38 EEIIEEIIEELKNYGIKGIVLTGGE--PLLHENYDELLEILKYIKEKFPKKIIILTNGYTLDELL 100 (139)
T ss_dssp HHHHHHHCHHHCCCCCCEEEEECST--GGGHHSHHHHHHHHHHHHHTT-SEEEEEETT--HHHHH
T ss_pred chhhhhhhhHHhcCCceEEEEcCCC--eeeeccHhHHHHHHHHHHHhCCCCeEEEECCCchhHHH
Confidence 3555554 45557899999999955 999 7899999999988888 344555445555443
No 16
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=62.28 E-value=48 Score=29.81 Aligned_cols=72 Identities=19% Similarity=0.268 Sum_probs=45.0
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHhhCC-eeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 023334 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 214 (283)
Q Consensus 136 Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gN-hi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESq 214 (283)
.+.|.+.|.|.| -=|++|.+++||+.|+--..=. .|.|.| +..+-..++- |.....+.+.| ||+--.+|..
T Consensus 50 ~~~g~~~v~~~G--GEPll~~~~~~ii~~~~~~g~~~~l~TNG-~ll~~e~~~~-L~~~g~~~v~i----Sldg~~~e~~ 121 (358)
T TIGR02109 50 AELGVLQLHFSG--GEPLARPDLVELVAHARRLGLYTNLITSG-VGLTEARLDA-LADAGLDHVQL----SFQGVDEALA 121 (358)
T ss_pred HhcCCcEEEEeC--ccccccccHHHHHHHHHHcCCeEEEEeCC-ccCCHHHHHH-HHhCCCCEEEE----eCcCCCHHHH
Confidence 446889999998 4689999999999998654212 355554 4444445543 33325555665 5555555544
Q ss_pred H
Q 023334 215 E 215 (283)
Q Consensus 215 e 215 (283)
+
T Consensus 122 d 122 (358)
T TIGR02109 122 D 122 (358)
T ss_pred H
Confidence 3
No 17
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=60.66 E-value=34 Score=30.49 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHh
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVI 168 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl 168 (283)
+...+..+.+.|.+.|.|.|.- |++|..++|++.++-..
T Consensus 54 i~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~li~~i~~~ 92 (331)
T PRK00164 54 IERLVRAFVALGVRKVRLTGGE--PLLRKDLEDIIAALAAL 92 (331)
T ss_pred HHHHHHHHHHCCCCEEEEECCC--CcCccCHHHHHHHHHhc
Confidence 5555555667799999999954 99999999999997654
No 18
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=58.19 E-value=25 Score=25.91 Aligned_cols=51 Identities=27% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhh-HhcCCCCCCCChHHHHhh
Q 023334 186 IRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKT-VIEKPHNDHLPLIEASRL 240 (283)
Q Consensus 186 IRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V~h-lVE~PeND~LpL~eAS~l 240 (283)
++-.+..+++|++.|.-|-+. ..+-....|+.=+| ++|||--. .+.++.+|
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~--h~~~~~~~l~~g~~v~~EKP~~~--~~~~~~~l 105 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSS--HAEIAKKALEAGKHVLVEKPLAL--TLEEAEEL 105 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGG--HHHHHHHHHHTTSEEEEESSSSS--SHHHHHHH
T ss_pred HHHHHHhhcCCEEEEecCCcc--hHHHHHHHHHcCCEEEEEcCCcC--CHHHHHHH
Confidence 666788789999999998754 33334444444444 67998643 45555443
No 19
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=56.11 E-value=1.2e+02 Score=29.58 Aligned_cols=134 Identities=18% Similarity=0.126 Sum_probs=90.1
Q ss_pred hHHHHHHHHHh---cCCceEEEecccccchhHHHHHHHHHHHHHhhCCee--eecCCCCchHHHHHhhhhhcCCCceeEe
Q 023334 127 DYLQELLAIQQ---QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHI--YTSGASGTNAAVIRGALRAERPDLLTVI 201 (283)
Q Consensus 127 D~lqELaaIQq---~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi--~TSGA~GTNAAvIRGaLrAe~P~lLTVi 201 (283)
+.++|+..-.. .....|-|.|.- -|+.|..+.|++.++=...-|.. +|||..=.+..+++-.++. ..+.+.|
T Consensus 58 evl~ev~~d~~~~~~~~ggVtisGGG-epl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~-gld~v~i- 134 (404)
T TIGR03278 58 VVLGEVQTSLGFRTGRDTKVTISGGG-DVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN-GVREVSF- 134 (404)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCc-ccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc-CCCEEEE-
Confidence 37777766432 233567777764 68899999999998876555443 3777643466666666665 4555555
Q ss_pred ecccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHHhhhhHHHHhhhceeeEEEeeCchHHHHHHHHHHhcc
Q 023334 202 LPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDIISHVQQVICFAFHDSRLLMETCQEAKNLR 274 (283)
Q Consensus 202 LPQSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS~lCN~eIIsrcqQlICFAFHDS~tLLetC~eAe~~~ 274 (283)
|++-=.+|.++.+-.+-+. ..-|.-..+++. .+.-.++-++|=-+-|++.+.++++.+++++
T Consensus 135 ---Svka~dpe~h~kl~G~~~a-------~~ILe~L~~L~e-~~~v~~~ivlIPGiND~eel~~ti~~L~~lg 196 (404)
T TIGR03278 135 ---TVFATDPELRREWMKDPTP-------EASLQCLRRFCE-SCEVHAASVIIPGVNDGDVLWKTCADLESWG 196 (404)
T ss_pred ---ecccCCHHHHHHHhCCCCH-------HHHHHHHHHHHh-cCCEEEEEEEeCCccCcHHHHHHHHHHHHCC
Confidence 5666667777765443221 234444555666 4667788899999999999999999999975
No 20
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=55.78 E-value=20 Score=34.96 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCC
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA 178 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA 178 (283)
++.=....|+.|.|+|-|.|.--.|-+|+ |+|.|.||... ==-++-|+.
T Consensus 154 La~i~~~~~~~GakNvN~Vgg~Ptp~lp~-Ile~l~~~~~~-iPvvwNSnm 202 (335)
T COG1313 154 LAEIILELRRHGAKNVNFVGGDPTPHLPF-ILEALRYASEN-IPVVWNSNM 202 (335)
T ss_pred HHHHHHHHHHhcCcceeecCCCCCCchHH-HHHHHHHHhcC-CCEEEecCC
Confidence 44444455669999999999666666664 78999998765 233444443
No 21
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=55.55 E-value=55 Score=28.09 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=27.6
Q ss_pred ccchhHHHHHHHHHHHHHhh---CCeeeecCCCCchHHHHHhhhh
Q 023334 150 NMGFMHQELIEILSYALVIT---KNHIYTSGASGTNAAVIRGALR 191 (283)
Q Consensus 150 hvp~~hq~LIEllsyALvl~---gNhi~TSGA~GTNAAvIRGaLr 191 (283)
.+.-+=+.+++.++.-+-.. .+-++|+|+|-.|..+++.+.+
T Consensus 35 ~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~ 79 (345)
T cd06450 35 AATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARD 79 (345)
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHH
Confidence 33344445555555433322 4688999999999999998865
No 22
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=55.37 E-value=1.1e+02 Score=27.83 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=44.7
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHhhCC-eeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 023334 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKN-HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 214 (283)
Q Consensus 136 Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gN-hi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESq 214 (283)
.+.|.+.|.|.|. =|++|-+++||+.|+-...=. .|.|.| +..+--.++- |.....+-+.| ||+--.+|..
T Consensus 59 ~~~g~~~v~~~GG--EPll~~~~~~il~~~~~~g~~~~i~TNG-~ll~~~~~~~-L~~~g~~~v~i----Sldg~~~e~~ 130 (378)
T PRK05301 59 RALGALQLHFSGG--EPLLRKDLEELVAHARELGLYTNLITSG-VGLTEARLAA-LKDAGLDHIQL----SFQDSDPELN 130 (378)
T ss_pred HHcCCcEEEEECC--ccCCchhHHHHHHHHHHcCCcEEEECCC-ccCCHHHHHH-HHHcCCCEEEE----EecCCCHHHH
Confidence 4568899999995 489999999999998654212 355554 4455445543 33324444444 5555445543
Q ss_pred H
Q 023334 215 E 215 (283)
Q Consensus 215 e 215 (283)
+
T Consensus 131 d 131 (378)
T PRK05301 131 D 131 (378)
T ss_pred H
Confidence 3
No 23
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=55.02 E-value=49 Score=24.27 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=45.0
Q ss_pred hHHHHHHHH-HhcCCceEEEecccccchhHHHHHHHHHHHHHh---hCCeeeecCCCCchHHHHHhhhhhcCCCceeE
Q 023334 127 DYLQELLAI-QQQGPRAIGFFGTRNMGFMHQELIEILSYALVI---TKNHIYTSGASGTNAAVIRGALRAERPDLLTV 200 (283)
Q Consensus 127 D~lqELaaI-Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl---~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTV 200 (283)
++++++..+ ++.|.+.|.+.|. =|++|.+..+++.++... ...-.+++.++-.+-..++-..+. ..+.+.+
T Consensus 32 ~i~~~~~~~~~~~~~~~i~~~~g--ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~-~~~~i~~ 106 (166)
T PF04055_consen 32 EILEEIKELKQDKGVKEIFFGGG--EPTLHPDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKL-GVDRIRI 106 (166)
T ss_dssp HHHHHHHHHHHHTTHEEEEEESS--TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHT-TCSEEEE
T ss_pred HHHHHHHHHhHhcCCcEEEEeec--CCCcchhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhc-CccEEec
Confidence 488899999 7888555555443 478999999999999987 333334444444435555555554 3344443
No 24
>PLN03032 serine decarboxylase; Provisional
Probab=53.45 E-value=29 Score=32.79 Aligned_cols=76 Identities=14% Similarity=0.070 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCCceEEEecccc-----cchhHHHHHHHHHHHHHhhCC-e--eeecCCCCchHHHHHhhhhhcCCCc
Q 023334 126 VDYLQELLAIQQQGPRAIGFFGTRN-----MGFMHQELIEILSYALVITKN-H--IYTSGASGTNAAVIRGALRAERPDL 197 (283)
Q Consensus 126 vD~lqELaaIQq~G~rrIa~lGsRh-----vp~~hq~LIEllsyALvl~gN-h--i~TSGA~GTNAAvIRGaLrAe~P~l 197 (283)
.||. ++.++.+-....+|--++-| .--+=.+++++++.-+-.... . ++|||||-.|--++++|-.. .|+-
T Consensus 35 ~~~~-~~~~~~~~~~~~~gnP~s~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~-~~~~ 112 (374)
T PLN03032 35 FDYG-ELSQLMKYSINNLGDPFIESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREV-FPDG 112 (374)
T ss_pred cChH-HHHHHHHhcccCCCCCcccCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHh-CCCc
Confidence 5654 47777776666677666655 233445566666655554433 3 89999999998888887433 3332
Q ss_pred eeEeecc
Q 023334 198 LTVILPQ 204 (283)
Q Consensus 198 LTViLPQ 204 (283)
.||.+.
T Consensus 113 -~vi~s~ 118 (374)
T PLN03032 113 -ILYASR 118 (374)
T ss_pred -EEEeCC
Confidence 455553
No 25
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=53.21 E-value=46 Score=27.43 Aligned_cols=90 Identities=13% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHHHHHH---hcCCceEEEecccc---cchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHH-----HhhhhhcCCC
Q 023334 128 YLQELLAIQ---QQGPRAIGFFGTRN---MGFMHQELIEILSYALVITKNHIYTSGASGTNAAVI-----RGALRAERPD 196 (283)
Q Consensus 128 ~lqELaaIQ---q~G~rrIa~lGsRh---vp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvI-----RGaLrAe~P~ 196 (283)
+..|+.++. +.++.+|.|||.-- ++..- ...+.-.+.+-.++--|-+|.+..-+ ++++.+.+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~iv~lGDSit~g~~~~~-----~~~~~~~~~~~~v~N~Gi~G~tt~~~l~r~~~~~l~~~~pd 91 (214)
T cd01820 17 WMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTG-----LEVWRELYAPLHALNFGIGGDRTQNVLWRLENGELDGVNPK 91 (214)
T ss_pred HHHHHHHHHHHhhcCCCCEEEECchHhhhhcccc-----hHHHHHHcCcCCeEeeeeccccHhHHHHHHhcCCccCCCCC
Confidence 777777776 46788999999642 22211 11222223467777777777776443 2445455799
Q ss_pred ceeEeeccc-ccC--CChhHHHHHHHHhh
Q 023334 197 LLTVILPQS-LKK--QPPESQELLAKVKT 222 (283)
Q Consensus 197 lLTViLPQS-L~k--Qp~ESqelLe~V~h 222 (283)
++.|.+=-- +.+ -+.+.++-+++++.
T Consensus 92 ~VvI~~G~ND~~~~~~~~~~~~~l~~ii~ 120 (214)
T cd01820 92 VVVLLIGTNNIGHTTTAEEIAEGILAIVE 120 (214)
T ss_pred EEEEEecccccCCCCCHHHHHHHHHHHHH
Confidence 988876321 111 23444555544443
No 26
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=51.64 E-value=84 Score=25.03 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhc-----CCCcee-EeecccccCCChhHHHHHHHHhhHhcCCCCC
Q 023334 157 ELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAE-----RPDLLT-VILPQSLKKQPPESQELLAKVKTVIEKPHND 230 (283)
Q Consensus 157 ~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe-----~P~lLT-ViLPQSL~kQp~ESqelLe~V~hlVE~PeND 230 (283)
+..++++.++ ..|++|++-|+.|..+.+---+.|.- +|-.+. +.|+... +-...+- .++|
T Consensus 23 ~aa~~i~~~~-~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~ 88 (138)
T PF13580_consen 23 KAADLIAEAL-RNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDA----------LTAISND---LEYD 88 (138)
T ss_dssp HHHHHHHHHH-HTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH----------HHHHHHH---TTGG
T ss_pred HHHHHHHHHH-HCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccch----------Hhhhhcc---cchh
Confidence 4566777666 67888888888666655554444432 222222 2222211 1111111 1112
Q ss_pred CCChHHHHhhhhHHHHhhhceeeEEEee-CchHHHHHHHHHHhccCeeEE
Q 023334 231 HLPLIEASRLCNMDIISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTL 279 (283)
Q Consensus 231 ~LpL~eAS~lCN~eIIsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVTL 279 (283)
. .-|..+.+.-=+..=|=||++.-. .|..+++.+++|++++..|.-
T Consensus 89 ~---~~~~~~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 89 E---GFARQLLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp G---THHHHHHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred h---HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 1 111222222114555668888764 578899999999999987653
No 27
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=47.93 E-value=8.2 Score=29.39 Aligned_cols=17 Identities=18% Similarity=0.520 Sum_probs=13.9
Q ss_pred HhhCCeeeecCCCCchH
Q 023334 167 VITKNHIYTSGASGTNA 183 (283)
Q Consensus 167 vl~gNhi~TSGA~GTNA 183 (283)
+..|+.||+||-.|.+.
T Consensus 7 v~~g~~v~iSGq~~~~~ 23 (105)
T cd06150 7 VVHNGTVYLAGQVADDT 23 (105)
T ss_pred EEECCEEEEeCcCCcCC
Confidence 34689999999999863
No 28
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=47.57 E-value=28 Score=30.74 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhh
Q 023334 154 MHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191 (283)
Q Consensus 154 ~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLr 191 (283)
.+.++-|.++.-+-. .+-++|+|++..+.+++++.++
T Consensus 45 ~~~~l~~~la~~~g~-~~i~~~~g~t~al~~~l~~~~~ 81 (361)
T cd06452 45 PIKDFHHDLAEFLGM-DEARVTPGAREGKFAVMHSLCE 81 (361)
T ss_pred hHHHHHHHHHHHcCC-ceEEEeCCHHHHHHHHHHHhcC
Confidence 455666666554433 5677777777666667766543
No 29
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=46.52 E-value=71 Score=28.11 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=8.1
Q ss_pred cCCCCCCCChHHHHhhhh
Q 023334 225 EKPHNDHLPLIEASRLCN 242 (283)
Q Consensus 225 E~PeND~LpL~eAS~lCN 242 (283)
|.|...-+|+.+-..+|.
T Consensus 139 ~~~tG~~~~i~~I~~l~~ 156 (363)
T TIGR02326 139 ETTTGILNPIEAVAKLAH 156 (363)
T ss_pred cCCccccCcHHHHHHHHH
Confidence 444444444444444443
No 30
>TIGR01706 NAPA periplasmic nitrate reductase, large subunit. The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).
Probab=46.41 E-value=48 Score=34.04 Aligned_cols=37 Identities=32% Similarity=0.575 Sum_probs=27.6
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhH
Q 023334 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMH 155 (283)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~G~rrIa~lGsRhvp~~h 155 (283)
+++++.= +| ++++|.+|++ .|+..|+++|+.+.+...
T Consensus 115 ~~~~iSWDeAl~~iA~kl~~i~~~~G~~si~~~gsg~~~~~~ 156 (830)
T TIGR01706 115 EFTPVSWDQAFDEMEEQFKRALKEKGPTAIGMFGSGQWTIWE 156 (830)
T ss_pred CeeEcCHHHHHHHHHHHHHHHHHHhCCceEEEEecCCcchHH
Confidence 5666662 56 6778888765 799999999998877543
No 31
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.32 E-value=2.2e+02 Score=27.39 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCCceEEEeccc--cc--ch-hHHHHHHHHHHHHHhhCC---eeeecCCCCchHHHHHhhhhhcCCCce
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTR--NM--GF-MHQELIEILSYALVITKN---HIYTSGASGTNAAVIRGALRAERPDLL 198 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsR--hv--p~-~hq~LIEllsyALvl~gN---hi~TSGA~GTNAAvIRGaLrAe~P~lL 198 (283)
++++|+..+.+.|-|.|.|.|.- .. ++ .+..|.||+.+..-..|- ++.|+-....+-.++. +|+....-.-
T Consensus 188 ~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~-~l~~~~~~~~ 266 (459)
T PRK14338 188 EIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIH-AVARLPKCCP 266 (459)
T ss_pred HHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHH-HHhccccccc
Confidence 49999999999999999999831 11 11 256788998876554442 3444444444444443 4433111223
Q ss_pred eEeec-ccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHH---hhhhHH---HHhhhceeeEEEeeCchHHHHHHHHHH
Q 023334 199 TVILP-QSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEAS---RLCNMD---IISHVQQVICFAFHDSRLLMETCQEAK 271 (283)
Q Consensus 199 TViLP-QSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS---~lCN~e---IIsrcqQlICFAFHDS~tLLetC~eAe 271 (283)
.|-|| ||.+ .+.| ..+-++. ...+.- +.+... |-=.++=++.|---+-+.+.++.+.++
T Consensus 267 ~v~lglQSgs------d~vL----k~m~R~~----t~e~~~~~i~~lr~~~pgi~i~~d~IvG~PgET~ed~~~ti~~l~ 332 (459)
T PRK14338 267 HINLPVQAGD------DEVL----KRMRRGY----TVARYRELIARIREAIPDVSLTTDIIVGHPGETEEQFQRTYDLLE 332 (459)
T ss_pred ceecCcccCC------HHHH----HhccCCC----CHHHHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 44443 5553 2222 2222322 233322 222221 212334455677778888999999999
Q ss_pred hccC-eeEEe
Q 023334 272 NLRK-IVTLF 280 (283)
Q Consensus 272 ~~~K-iVTLf 280 (283)
+++- -+.+|
T Consensus 333 ~l~~~~v~i~ 342 (459)
T PRK14338 333 EIRFDKVHIA 342 (459)
T ss_pred HcCCCEeEEE
Confidence 8873 34443
No 32
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.73 E-value=2.4 Score=44.50 Aligned_cols=151 Identities=24% Similarity=0.269 Sum_probs=95.9
Q ss_pred ccccCCCCCcccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHH-HHHhcCCceEEEe
Q 023334 71 MRKDQDMDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELL-AIQQQGPRAIGFF 146 (283)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELa-aIQq~G~rrIa~l 146 (283)
|++.-..-|+|..-.++....+-|-+ .|-.+++-||.-...|....-..+-. +| +++|+. .+|++|--.|+=|
T Consensus 63 I~dEl~v~GgRaslvDla~tlnVDl~---hIEk~a~dIv~~d~~v~Lv~geiide~Y~d~iaeEinekLqE~gqvtiaeL 139 (776)
T KOG2235|consen 63 IKDELIVAGGRASLVDLAVTLNVDLD---HIEKTARDIVSTDDEVTLVLGEIIDEEYVDRIAEEINEKLQEQGQVTIAEL 139 (776)
T ss_pred HHHHHHHhCCcchhHHHHHHhCcCHH---HHHHHHHHHhhcCCceEEehhhhhhHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 33333445666666777777777766 66777777776554443332222222 67 888886 5899999888754
Q ss_pred -cccccc--hhHHHHHHHHHHHH---HhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-----CChhHHH
Q 023334 147 -GTRNMG--FMHQELIEILSYAL---VITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-----QPPESQE 215 (283)
Q Consensus 147 -GsRhvp--~~hq~LIEllsyAL---vl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-----Qp~ESqe 215 (283)
|.-++| |+.+-|+|=+--.+ .+.|..|||+-------|+||||++| +|+.-|=|--- |+.----
T Consensus 140 akq~dl~sellqs~l~ek~lg~iikgr~dggviyT~Ayv~r~ka~iRga~~a-----Itrptnvs~i~~k~gvqek~~~s 214 (776)
T KOG2235|consen 140 AKQWDLPSELLQSLLIEKLLGSIIKGRVDGGVIYTSAYVNRRKAVIRGALIA-----ITRPTNVSTIQKKVGVQEKRFYS 214 (776)
T ss_pred HHhcCCcHHHHHHHHHHHhhccceeeeecCCEEeeHHHHHHHHHHHHHHHHH-----hhcCCcHHHHHHHhcccHHHHHH
Confidence 555665 66666777532222 35678899987666666999999999 66655544333 3333334
Q ss_pred HHHHHhhHhcCCCC
Q 023334 216 LLAKVKTVIEKPHN 229 (283)
Q Consensus 216 lLe~V~hlVE~PeN 229 (283)
.++.+.+.-|.|+-
T Consensus 215 ~feei~n~g~~~gt 228 (776)
T KOG2235|consen 215 AFEEIQNLGEIPGT 228 (776)
T ss_pred HHHHHHhcccCccc
Confidence 57788888888764
No 33
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=45.54 E-value=1.9e+02 Score=24.55 Aligned_cols=48 Identities=25% Similarity=0.278 Sum_probs=37.6
Q ss_pred ecccccch---hHHHHHHHHHHHHHhhCCeeeecCCCCc--hHHHHHhhhhhc
Q 023334 146 FGTRNMGF---MHQELIEILSYALVITKNHIYTSGASGT--NAAVIRGALRAE 193 (283)
Q Consensus 146 lGsRhvp~---~hq~LIEllsyALvl~gNhi~TSGA~GT--NAAvIRGaLrAe 193 (283)
||+-.++- --.+..+++.+|+-.+-|+|=|+-.-|. +-..|.-||+..
T Consensus 16 ~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~ 68 (285)
T cd06660 16 LGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER 68 (285)
T ss_pred eeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc
Confidence 36655543 2368899999999999999999977665 888888888873
No 34
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=44.84 E-value=43 Score=25.29 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=28.5
Q ss_pred hHHHHHHHHHhcC-CceEEEecccccchhHHHHH
Q 023334 127 DYLQELLAIQQQG-PRAIGFFGTRNMGFMHQELI 159 (283)
Q Consensus 127 D~lqELaaIQq~G-~rrIa~lGsRhvp~~hq~LI 159 (283)
|+.+||+..+++| +..+-+|++-.||..+...-
T Consensus 1 ~~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~ 34 (125)
T cd02951 1 DLYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKR 34 (125)
T ss_pred ChHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHH
Confidence 6889999999999 88889999999998876543
No 35
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=43.38 E-value=60 Score=30.52 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhC
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g 170 (283)
+.+.+..+...|.+.|-|-|. =|++|..|.|++.|+-.+.|
T Consensus 95 i~~~i~~~~~~Gv~~I~~tGG--EPllr~dl~eli~~l~~~~g 135 (373)
T PLN02951 95 IVRLAGLFVAAGVDKIRLTGG--EPTLRKDIEDICLQLSSLKG 135 (373)
T ss_pred HHHHHHHHHHCCCCEEEEECC--CCcchhhHHHHHHHHHhcCC
Confidence 445455566789999999995 49999999999999877655
No 36
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=43.13 E-value=82 Score=25.04 Aligned_cols=64 Identities=14% Similarity=0.247 Sum_probs=34.9
Q ss_pred CceEEEeccccc-ch---hHHHHHHHHHHHHHh--hCCeeeecCCCCchHHHHHh----hh----hhcCCCceeEeec
Q 023334 140 PRAIGFFGTRNM-GF---MHQELIEILSYALVI--TKNHIYTSGASGTNAAVIRG----AL----RAERPDLLTVILP 203 (283)
Q Consensus 140 ~rrIa~lGsRhv-p~---~hq~LIEllsyALvl--~gNhi~TSGA~GTNAAvIRG----aL----rAe~P~lLTViLP 203 (283)
|++|.+||.--. ++ .+......+.+.+.. .+..++--|-.|.++.-+.- .. ..++|++++|.+-
T Consensus 1 ~~~i~~lGDSit~G~~~~~~~~~~~~~~~~~~~~~~~~~~~N~gi~G~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G 78 (193)
T cd01835 1 PKRLIVVGDSLVYGWGDPEGGGWVGRLRARWMNLGDDPVLYNLGVRGDGSEDVAARWRAEWSRRGELNVPNRLVLSVG 78 (193)
T ss_pred CcEEEEEcCccccCCCCCCCCChHHHHHHHhhccCCCeeEEeecCCCCCHHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 678999986221 11 234455555554433 34455556666666532211 11 1258999998763
No 37
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=43.04 E-value=18 Score=35.38 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=21.8
Q ss_pred hCCeeeecCCCCchHHHHHhhhhhc
Q 023334 169 TKNHIYTSGASGTNAAVIRGALRAE 193 (283)
Q Consensus 169 ~gNhi~TSGA~GTNAAvIRGaLrAe 193 (283)
..+-+||||||=-|-.+|+|++.+.
T Consensus 61 ~~eIiFTSG~TEsnNlaI~g~~~a~ 85 (386)
T COG1104 61 PEEIIFTSGATESNNLAIKGAALAY 85 (386)
T ss_pred CCeEEEecCCcHHHHHHHHhhHHhh
Confidence 3578899999999999999988774
No 38
>PRK10200 putative racemase; Provisional
Probab=42.13 E-value=24 Score=30.90 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=17.3
Q ss_pred cCCChhHHHHHH-HHHhcCCceEEEeccc
Q 023334 122 PVPDVDYLQELL-AIQQQGPRAIGFFGTR 149 (283)
Q Consensus 122 ~~p~vD~lqELa-aIQq~G~rrIa~lGsR 149 (283)
++|=+....+.. +++.+|.|+||+|||+
T Consensus 98 ~iPii~ii~~~~~~~~~~~~~~VglLaT~ 126 (230)
T PRK10200 98 SLPFLHIADATGRAITGAGMTRVALLGTR 126 (230)
T ss_pred CCCEeehHHHHHHHHHHcCCCeEEEeccH
Confidence 355444444433 3556788888888876
No 39
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=41.96 E-value=10 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.354 Sum_probs=28.7
Q ss_pred hhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhH
Q 023334 168 ITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTV 223 (283)
Q Consensus 168 l~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V~hl 223 (283)
..|+.||+||-.|.+. +--++. |.+++.|.+..-+.|++++.-
T Consensus 16 ~~g~~v~isGq~~~d~------------~~~~~~-~~~~~~Q~~~~l~ni~~~L~~ 58 (121)
T PF01042_consen 16 RAGDTVFISGQVGIDP------------ATGQVV-PGDIEEQTRQALDNIERILAA 58 (121)
T ss_dssp EETTEEEEEEEESBCT------------TTSSBS-SSSHHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEEeeeCCcCC------------CCCcCC-CCCHHHHHHHHHHhhhhhhhc
Confidence 4799999999998754 333344 777777766655555555443
No 40
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=41.24 E-value=98 Score=23.26 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=36.2
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCC--CchHHHHHhhhh
Q 023334 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALR 191 (283)
Q Consensus 141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~--GTNAAvIRGaLr 191 (283)
.||.|-|+|+.- =|+.+..-|...+...++-++-+|++ |....+-+=|-+
T Consensus 4 ~rVli~GgR~~~-D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~ 55 (71)
T PF10686_consen 4 MRVLITGGRDWT-DHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARE 55 (71)
T ss_pred CEEEEEECCccc-cHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 589999999976 45556677777777777766666555 888877666533
No 41
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=41.13 E-value=27 Score=25.09 Aligned_cols=35 Identities=9% Similarity=-0.009 Sum_probs=20.8
Q ss_pred hhHHHHhhhcee-eEEEeeCchHHHHHHHHHHhccCe
Q 023334 241 CNMDIISHVQQV-ICFAFHDSRLLMETCQEAKNLRKI 276 (283)
Q Consensus 241 CN~eIIsrcqQl-ICFAFHDS~tLLetC~eAe~~~Ki 276 (283)
-|.+++..+|=+ ||.-.++-..+++.. ..-..+|+
T Consensus 54 ~~~~~~~~advvilav~p~~~~~v~~~i-~~~~~~~~ 89 (96)
T PF03807_consen 54 DNEEAAQEADVVILAVKPQQLPEVLSEI-PHLLKGKL 89 (96)
T ss_dssp EHHHHHHHTSEEEE-S-GGGHHHHHHHH-HHHHTTSE
T ss_pred ChHHhhccCCEEEEEECHHHHHHHHHHH-hhccCCCE
Confidence 477888877743 466667777777777 33334443
No 42
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=40.21 E-value=1.7e+02 Score=22.35 Aligned_cols=42 Identities=29% Similarity=0.136 Sum_probs=32.8
Q ss_pred hhHHHHhhhceeeEEEee---CchHHHHHHHHHHhccCeeEEeecC
Q 023334 241 CNMDIISHVQQVICFAFH---DSRLLMETCQEAKNLRKIVTLFYLD 283 (283)
Q Consensus 241 CN~eIIsrcqQlICFAFH---DS~tLLetC~eAe~~~KiVTLfYfD 283 (283)
=+.+.|.+||=||++-=. |+-|..|-. -|..++|-|-+++-|
T Consensus 54 ~d~~~i~~~D~via~l~~~~~d~Gt~~ElG-~A~algkpv~~~~~d 98 (113)
T PF05014_consen 54 RDLEGIRECDIVIANLDGFRPDSGTAFELG-YAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHHHSSEEEEEECSSS--HHHHHHHH-HHHHTTSEEEEEECC
T ss_pred HHHHHHHHCCEEEEECCCCCCCCcHHHHHH-HHHHCCCEEEEEEcC
Confidence 356889999999998654 899999865 567789988888765
No 43
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=40.21 E-value=2.2e+02 Score=25.95 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=30.8
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeee
Q 023334 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (283)
Q Consensus 134 aIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~T 175 (283)
.|.+.|.+.|.|.|. =|++|.++.||+.|+......--++
T Consensus 67 ~i~e~g~~~V~i~GG--EPLL~pdl~eiv~~~~~~g~~v~l~ 106 (318)
T TIGR03470 67 AVDECGAPVVSIPGG--EPLLHPEIDEIVRGLVARKKFVYLC 106 (318)
T ss_pred HHHHcCCCEEEEeCc--cccccccHHHHHHHHHHcCCeEEEe
Confidence 344568899999994 7999999999999997764443333
No 44
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=39.78 E-value=54 Score=30.52 Aligned_cols=42 Identities=17% Similarity=0.127 Sum_probs=35.1
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccchhH-HHHHHHHHHHHH
Q 023334 126 VD-YLQELLAIQQQGPRAIGFFGTRNMGFMH-QELIEILSYALV 167 (283)
Q Consensus 126 vD-~lqELaaIQq~G~rrIa~lGsRhvp~~h-q~LIEllsyALv 167 (283)
.| +.+++.++.+.|.++|.++|.++-+..+ ..|+|++.+.-.
T Consensus 105 ~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~ 148 (366)
T TIGR02351 105 EEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLARE 148 (366)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHH
Confidence 35 8888989999999999999988888675 569999887754
No 45
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=39.17 E-value=52 Score=24.01 Aligned_cols=58 Identities=19% Similarity=0.342 Sum_probs=33.7
Q ss_pred cccCCC-hh-HHHHHHHHHhcCCceEEEec-ccccchhHHHHHHHHHHHHHhhCCeeeecCC
Q 023334 120 FKPVPD-VD-YLQELLAIQQQGPRAIGFFG-TRNMGFMHQELIEILSYALVITKNHIYTSGA 178 (283)
Q Consensus 120 ~~~~p~-vD-~lqELaaIQq~G~rrIa~lG-sRhvp~~hq~LIEllsyALvl~gNhi~TSGA 178 (283)
|.--|+ +. +++.|..+- .+.|.|++|| .++.+---....+.+...+......+++.|.
T Consensus 20 ~ahNp~s~~a~l~~l~~~~-~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 20 YAHNPDSIRALLEALKELY-PKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp T--SHHHHHHHHHHHHHHC-TTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CCCCHHHHHHHHHHHHHhc-cCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 666665 33 444444442 2789999999 5665444555555666666665666777654
No 46
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=39.13 E-value=99 Score=27.13 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=37.5
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCe-eeecCCC
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNH-IYTSGAS 179 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNh-i~TSGA~ 179 (283)
++++++..+...|.+.|.|-|. =|++|..|.|++.++-...-+- |-|+|.-
T Consensus 60 ei~~~i~~~~~~~~~~V~lTGG--EPll~~~l~~li~~l~~~g~~v~leTNGtl 111 (238)
T TIGR03365 60 EVWQELKALGGGTPLHVSLSGG--NPALQKPLGELIDLGKAKGYRFALETQGSV 111 (238)
T ss_pred HHHHHHHHHhCCCCCeEEEeCC--chhhhHhHHHHHHHHHHCCCCEEEECCCCC
Confidence 4777777766667899999995 5999999999999987653332 3455543
No 47
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=38.25 E-value=1.3e+02 Score=25.71 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeec---CCCCchHHHHHhhh
Q 023334 139 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGAL 190 (283)
Q Consensus 139 G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TS---GA~GTNAAvIRGaL 190 (283)
-+++|-|+|||. ..+.+|+..+ -.+|.+-++. |++=||.-.+++-+
T Consensus 55 ~~g~iLfV~t~~---~~~~~v~~~a---~~~~~~~i~~rw~~G~LTN~~~~~~~~ 103 (193)
T cd01425 55 KGGKILFVGTKP---QAQRAVKKFA---ERTGSFYVNGRWLGGTLTNWKTIRKSI 103 (193)
T ss_pred CCCEEEEEECCH---HHHHHHHHHH---HHcCCeeecCeecCCcCCCHHHHHHHH
Confidence 368899999998 3456666544 3446665554 89999999987753
No 48
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=38.22 E-value=50 Score=28.16 Aligned_cols=34 Identities=6% Similarity=0.107 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhh
Q 023334 155 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGA 189 (283)
Q Consensus 155 hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGa 189 (283)
+++|.|-++.-+- ..+.++|+|++..|.+++++.
T Consensus 34 ~~~l~~~~a~~~g-~~~~~~~~~gt~a~~~~~~~l 67 (338)
T cd06502 34 TAKLEARAAELFG-KEAALFVPSGTAANQLALAAH 67 (338)
T ss_pred HHHHHHHHHHHhC-CCeEEEecCchHHHHHHHHHh
Confidence 4444444443332 344555555554455555443
No 49
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=37.73 E-value=23 Score=35.39 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=23.6
Q ss_pred hhCCeeeecCCCCchHHHHHhhhhhcCC
Q 023334 168 ITKNHIYTSGASGTNAAVIRGALRAERP 195 (283)
Q Consensus 168 l~gNhi~TSGA~GTNAAvIRGaLrAe~P 195 (283)
-..+-+||||||--|..|++|.-|...-
T Consensus 101 d~~dIiFts~ATEs~Nlvl~~v~~~~~~ 128 (428)
T KOG1549|consen 101 DPSDIVFTSGATESNNLVLKGVARFFGD 128 (428)
T ss_pred CCCcEEEeCCchHHHHHHHHHhhccccc
Confidence 3556899999999999999999996444
No 50
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.53 E-value=19 Score=31.31 Aligned_cols=46 Identities=24% Similarity=0.452 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhHhcCCCC
Q 023334 155 HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHN 229 (283)
Q Consensus 155 hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V~hlVE~PeN 229 (283)
..+-.|++.|+.+ ||+.||--+|-||-+- |+..++.|.+.+||++|
T Consensus 90 ~~~a~evvp~eiv---------kAQStdVD~iSgAT~t--------------------S~aiI~svekaLek~~~ 135 (135)
T COG3976 90 NRQALEVVPDEIV---------KAQSTDVDIISGATLT--------------------SRAIIQSVEKALEKASS 135 (135)
T ss_pred hhhhcccccHHHh---------hccccccceeeccccc--------------------hHHHHHHHHHHHhccCC
Confidence 4566788888876 4555555555555443 55555557777777764
No 51
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=37.50 E-value=52 Score=30.12 Aligned_cols=40 Identities=13% Similarity=-0.003 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHh-hCCeeeecCCCCchHHHHHhhhhh
Q 023334 153 FMHQELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 153 ~~hq~LIEllsyALvl-~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
-.|++|-|.++.-+-. ..+-++|+|+...|.+++...+..
T Consensus 54 ~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al~~~ 94 (346)
T TIGR03576 54 IFEEKVQELGREHLGGPEEKILVFNRTSSAILATILALEPP 94 (346)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHhCCC
Confidence 7899999999887754 368899999999999999877654
No 52
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=37.40 E-value=98 Score=27.47 Aligned_cols=51 Identities=22% Similarity=0.101 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhhCCeeeecCCCCchHH-HHHhhhhhcCCCceeEeecc
Q 023334 153 FMHQELIEILSYALVITKNHIYTSGASGTNAA-VIRGALRAERPDLLTVILPQ 204 (283)
Q Consensus 153 ~~hq~LIEllsyALvl~gNhi~TSGA~GTNAA-vIRGaLrAe~P~lLTViLPQ 204 (283)
|=-.-+..++..|......+|+|+|++.-|.+ .+--+-+. .==..||++|.
T Consensus 39 ~K~R~~~~~l~~a~~~g~~~vv~~g~ssGN~g~alA~~a~~-~G~~~~ivvp~ 90 (311)
T TIGR01275 39 NKIRKLEYLLADALSKGADTVITVGAIQSNHARATALAAKK-LGLDAVLVLRE 90 (311)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCchhHHHHHHHHHHHH-hCCceEEEecC
Confidence 44455667777777776678999986544543 32222222 33347899998
No 53
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=37.34 E-value=1e+02 Score=27.92 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccC-----CChhHHHHHHHH-hhHhcC
Q 023334 153 FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKK-----QPPESQELLAKV-KTVIEK 226 (283)
Q Consensus 153 ~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k-----Qp~ESqelLe~V-~hlVE~ 226 (283)
|=-.-+.-++..|.......|+|+||+.-|.+.-=.++-+..-=..+|++|..... |+++-.++++.. .+||.-
T Consensus 47 ~K~R~~~~~l~~a~~~g~~~vvt~g~s~gN~g~alA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~ 126 (331)
T PRK03910 47 NKTRKLEFLLADALAQGADTLITAGAIQSNHARQTAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVV 126 (331)
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEcCcchhHHHHHHHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEe
Confidence 33444666777777666688999997555554333333333455678999986653 344555555533 245555
Q ss_pred CCC
Q 023334 227 PHN 229 (283)
Q Consensus 227 PeN 229 (283)
+..
T Consensus 127 ~~~ 129 (331)
T PRK03910 127 PAG 129 (331)
T ss_pred Ccc
Confidence 544
No 54
>TIGR00035 asp_race aspartate racemase.
Probab=36.64 E-value=27 Score=30.04 Aligned_cols=29 Identities=24% Similarity=0.589 Sum_probs=19.1
Q ss_pred cCCChhHHHHH-HHHHhcCCceEEEecccc
Q 023334 122 PVPDVDYLQEL-LAIQQQGPRAIGFFGTRN 150 (283)
Q Consensus 122 ~~p~vD~lqEL-aaIQq~G~rrIa~lGsRh 150 (283)
++|=+...++. .+++..|.|+||+|||+-
T Consensus 98 ~iPii~i~~~~~~~~~~~~~~~VgvLaT~~ 127 (229)
T TIGR00035 98 GIPLISMIEETAEAVKEDGVKKAGLLGTKG 127 (229)
T ss_pred CCCEechHHHHHHHHHHcCCCEEEEEecHH
Confidence 45544433332 345778999999999874
No 55
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=36.31 E-value=2.1e+02 Score=22.36 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=15.1
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHH
Q 023334 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALV 167 (283)
Q Consensus 137 q~G~rrIa~lGsRhvp~~hq~LIEllsyALv 167 (283)
+.|.|+|++++..+-...+...++-+..++.
T Consensus 115 ~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~ 145 (264)
T cd01537 115 EKGHRRIALLAGPLGSSTARERVAGFKDALK 145 (264)
T ss_pred HhcCCcEEEEECCCCCCcHHHHHHHHHHHHH
Confidence 4456666666554433344444444444443
No 56
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=36.25 E-value=2.2e+02 Score=22.92 Aligned_cols=66 Identities=17% Similarity=0.109 Sum_probs=34.5
Q ss_pred hcCCceEEEecccc-cchhHHHHHHHHHHHHHhhCC---eeeecC-CCCchHHHHHhhhhhcCCCceeEeeccc
Q 023334 137 QQGPRAIGFFGTRN-MGFMHQELIEILSYALVITKN---HIYTSG-ASGTNAAVIRGALRAERPDLLTVILPQS 205 (283)
Q Consensus 137 q~G~rrIa~lGsRh-vp~~hq~LIEllsyALvl~gN---hi~TSG-A~GTNAAvIRGaLrAe~P~lLTViLPQS 205 (283)
++|.|+|+++|... -.-.++.-.+=...++...|- .+++.+ .......+++..+++ .| .++|+-.+
T Consensus 111 ~~g~~~i~~v~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~i~~~~ 181 (259)
T cd01542 111 QQGHKNIAYLGVSESDIAVGILRKQGYLDALKEHGICPPNIVETDFSYESAYEAAQELLEP-QP--PDAIVCAT 181 (259)
T ss_pred HcCCCcEEEEcCCcccchhHHHHHHHHHHHHHHcCCChHHeeeccCchhhHHHHHHHHhcC-CC--CCEEEEcC
Confidence 37899999997542 223445544545555544443 123322 223333456666665 44 56666554
No 57
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=35.53 E-value=1.5e+02 Score=24.29 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=53.0
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHH
Q 023334 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQEL 216 (283)
Q Consensus 137 q~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqel 216 (283)
+-|.||||+-++.....+.+ +...+..-........++-..+.++|+.+-|=||-.++-..-+..+.
T Consensus 4 D~G~kriGvA~~d~~~~~a~-------------pl~~i~~~~~~~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~ 70 (130)
T TIGR00250 4 DFGTKSIGVAGQDITGWTAQ-------------GIPTIKAQDGEPDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTER 70 (130)
T ss_pred ccCCCeEEEEEECCCCCEEe-------------ceEEEEecCCcHHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHH
Confidence 35899999998877664432 22333333334557888889999999999999999998887766555
Q ss_pred HHHHhhHhc
Q 023334 217 LAKVKTVIE 225 (283)
Q Consensus 217 Le~V~hlVE 225 (283)
..+....++
T Consensus 71 v~~f~~~L~ 79 (130)
T TIGR00250 71 AQKFANRLE 79 (130)
T ss_pred HHHHHHHHH
Confidence 555544443
No 58
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=35.28 E-value=1.4e+02 Score=24.94 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=21.6
Q ss_pred hCCeeeecCCCCchHHHHHhhhhhcCCCceeEeeccc
Q 023334 169 TKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQS 205 (283)
Q Consensus 169 ~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQS 205 (283)
..+-++|+|+++.+.+++++..+.. -+|++|..
T Consensus 59 ~~~~~~~~~~t~a~~~~~~~~~~~g----~~vl~~~~ 91 (350)
T cd00609 59 PEEIVVTNGAQEALSLLLRALLNPG----DEVLVPDP 91 (350)
T ss_pred cceEEEecCcHHHHHHHHHHhCCCC----CEEEEcCC
Confidence 3457778888777777777775432 25777654
No 59
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=34.92 E-value=3e+02 Score=23.70 Aligned_cols=78 Identities=17% Similarity=0.198 Sum_probs=47.7
Q ss_pred cccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhh--CCeeeec-CCCCc-hHHHHHhhhhhcCC
Q 023334 120 FKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVIT--KNHIYTS-GASGT-NAAVIRGALRAERP 195 (283)
Q Consensus 120 ~~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~--gNhi~TS-GA~GT-NAAvIRGaLrAe~P 195 (283)
...++..|+..+|..-=.+...+|.++|++- ..+|-+...|... |..|... |--.. ....|.-.+++.+|
T Consensus 28 ~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~------~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~ 101 (177)
T TIGR00696 28 QSRVAGPDLMEELCQRAGKEKLPIFLYGGKP------DVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGA 101 (177)
T ss_pred CCccChHHHHHHHHHHHHHcCCeEEEECCCH------HHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCC
Confidence 3456667888888765444448999999973 3444444444443 3333332 22211 23556677777899
Q ss_pred CceeEeec
Q 023334 196 DLLTVILP 203 (283)
Q Consensus 196 ~lLTViLP 203 (283)
|+|-|=|-
T Consensus 102 dil~VglG 109 (177)
T TIGR00696 102 GIVFVGLG 109 (177)
T ss_pred CEEEEEcC
Confidence 99998874
No 60
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=34.92 E-value=52 Score=26.05 Aligned_cols=50 Identities=18% Similarity=0.150 Sum_probs=31.5
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNA 183 (283)
++.++ +++.|-+.+ ...+++==...|-|.+..++.. -+-|+|||++|...
T Consensus 23 ~l~~~--l~~~G~~v~---~~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~ 72 (133)
T cd00758 23 ALEAL--LEDLGCEVI---YAGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGR 72 (133)
T ss_pred HHHHH--HHHCCCEEE---EeeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCC
Confidence 44444 566674422 2234444455667777777654 78999999999754
No 61
>PRK09064 5-aminolevulinate synthase; Validated
Probab=34.56 E-value=40 Score=30.29 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=14.9
Q ss_pred HhcCCCC---CCCChHHHHhhhhHH
Q 023334 223 VIEKPHN---DHLPLIEASRLCNMD 244 (283)
Q Consensus 223 lVE~PeN---D~LpL~eAS~lCN~e 244 (283)
++|.|.| +-.|+.+-..+|...
T Consensus 183 ~~~~v~s~~G~~~~l~~i~~l~~~~ 207 (407)
T PRK09064 183 AFESVYSMDGDIAPIAEICDLADKY 207 (407)
T ss_pred EEeCCCCCCccccCHHHHHHHHHHc
Confidence 3455554 347888888888863
No 62
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=34.49 E-value=72 Score=30.34 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHH----hhCCeee--ecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHH
Q 023334 155 HQELIEILSYALV----ITKNHIY--TSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLA 218 (283)
Q Consensus 155 hq~LIEllsyALv----l~gNhi~--TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe 218 (283)
+.--..|+.+|.. ..|.+|+ |||-||.--|.+--++- =.+++++|..+ .+|-+++|+
T Consensus 43 DR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~G----y~~iivmP~~~---S~er~~~l~ 105 (300)
T COG0031 43 DRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAAKG----YRLIIVMPETM---SQERRKLLR 105 (300)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHHcC----CcEEEEeCCCC---CHHHHHHHH
Confidence 4444567778874 4488887 99999999887755433 36788899744 445555554
No 63
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=34.33 E-value=89 Score=25.21 Aligned_cols=50 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNA 183 (283)
+++++ +++.|-+.+ ...+++=-...|.|.+..++. .-.-|+|||++|...
T Consensus 31 ~l~~~--l~~~G~~v~---~~~~v~Dd~~~i~~~l~~~~~-~~DliIttGG~g~g~ 80 (144)
T TIGR00177 31 LLAAL--LEEAGFNVS---RLGIVPDDPEEIREILRKAVD-EADVVLTTGGTGVGP 80 (144)
T ss_pred HHHHH--HHHCCCeEE---EEeecCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 44444 445564322 223344345677788777654 678999999999854
No 64
>PRK13532 nitrate reductase catalytic subunit; Provisional
Probab=33.77 E-value=1e+02 Score=31.65 Aligned_cols=38 Identities=29% Similarity=0.554 Sum_probs=27.5
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhHH
Q 023334 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQ 156 (283)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~G~rrIa~lGsRhvp~~hq 156 (283)
+++++.= +| ++++|.+|++ .|++.|+++|+-+......
T Consensus 115 ~~~~isWdeAl~~iA~~l~~i~~~~G~~~i~~~~~g~~~~~~~ 157 (830)
T PRK13532 115 EFTPVSWDQAFDVMAEKFKKALKEKGPTAVGMFGSGQWTIWEG 157 (830)
T ss_pred CeEEecHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCcchHHH
Confidence 5666662 66 6778887754 7999999999877765443
No 65
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=33.74 E-value=1.3e+02 Score=28.59 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHhhCCeeee
Q 023334 140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (283)
Q Consensus 140 ~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~T 175 (283)
.++|||+|.-+||.. |+.+|+..||+++-
T Consensus 3 ~~kI~VIGlG~~G~~-------~A~~La~~G~~V~~ 31 (415)
T PRK11064 3 FETISVIGLGYIGLP-------TAAAFASRQKQVIG 31 (415)
T ss_pred ccEEEEECcchhhHH-------HHHHHHhCCCEEEE
Confidence 478999999999974 78888888988753
No 66
>COG3479 Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.20 E-value=23 Score=31.73 Aligned_cols=17 Identities=59% Similarity=1.040 Sum_probs=14.7
Q ss_pred HhcCC------CCCCCChHHHHh
Q 023334 223 VIEKP------HNDHLPLIEASR 239 (283)
Q Consensus 223 lVE~P------eND~LpL~eAS~ 239 (283)
++|.| +|||++|.++||
T Consensus 97 v~ehPEitvCyQNDhidLM~esR 119 (175)
T COG3479 97 VVEHPEITVCYQNDHIDLMEESR 119 (175)
T ss_pred hhcCCcEEEEeecCchhHHHHhH
Confidence 66777 499999999998
No 67
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=33.14 E-value=2.1e+02 Score=26.70 Aligned_cols=76 Identities=20% Similarity=0.273 Sum_probs=55.1
Q ss_pred ccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCC-C----chHHHHHhhhhhcCC
Q 023334 121 KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGAS-G----TNAAVIRGALRAERP 195 (283)
Q Consensus 121 ~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~-G----TNAAvIRGaLrAe~P 195 (283)
..+|..|+..+|.+.-.+..++|.++|+.. ..+|-.+.-|.....++--.|.. | +....|--.+.+.+|
T Consensus 89 ~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp------~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~p 162 (253)
T COG1922 89 ERVAGTDLVEALLKRAAEEGKRVFLLGGKP------GVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGP 162 (253)
T ss_pred ccCChHHHHHHHHHHhCccCceEEEecCCH------HHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCC
Confidence 367778999999999888899999999974 67777788888877755444443 2 222233344555699
Q ss_pred CceeEee
Q 023334 196 DLLTVIL 202 (283)
Q Consensus 196 ~lLTViL 202 (283)
++|.|=+
T Consensus 163 dil~Vgm 169 (253)
T COG1922 163 DILLVGM 169 (253)
T ss_pred CEEEEeC
Confidence 9999965
No 68
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=32.89 E-value=2.6e+02 Score=22.55 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=26.5
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHHhhC
Q 023334 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (283)
Q Consensus 135 IQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g 170 (283)
+.+.|.++|+|+|...-...++.-++=...++...|
T Consensus 109 l~~~g~~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~ 144 (260)
T cd06286 109 LIQKGYRKIAYCIGRKKSLNSQSRKKAYKDALEEYG 144 (260)
T ss_pred HHHCCCceEEEEcCCcccchhHHHHHHHHHHHHHcC
Confidence 556799999999876555566677777777776655
No 69
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=32.89 E-value=94 Score=27.94 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSY 164 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsy 164 (283)
+++|+.+..+.|-++|+|.|..|...-...+.|++..
T Consensus 41 I~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~ 77 (309)
T TIGR00423 41 ILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRA 77 (309)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHH
Confidence 6666666666677777777655543344445555444
No 70
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=32.88 E-value=55 Score=30.78 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=27.3
Q ss_pred CCChh-HHHHHHHHHhcCCceEEEecccccchh--HHHHHH
Q 023334 123 VPDVD-YLQELLAIQQQGPRAIGFFGTRNMGFM--HQELIE 160 (283)
Q Consensus 123 ~p~vD-~lqELaaIQq~G~rrIa~lGsRhvp~~--hq~LIE 160 (283)
.|.++ |++.|...++.| ++||++|.-==||+ |+.|||
T Consensus 121 ~~~~~~y~~~l~~~~~~~-~~i~~~~g~fdP~t~GH~~li~ 160 (332)
T TIGR00124 121 ATRLKRYCSTLPKPRTPG-NKIGSIVMNANPFTNGHRYLIE 160 (332)
T ss_pred CcCHHHHHHHHHHhccCC-CcEEEEEeCcCCCchHHHHHHH
Confidence 46666 999999877765 67888887777877 555554
No 71
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=32.86 E-value=2.4e+02 Score=22.09 Aligned_cols=34 Identities=26% Similarity=0.174 Sum_probs=19.3
Q ss_pred hcCCceEEEecccccchhHHHHHHHHHHHHHhhC
Q 023334 137 QQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (283)
Q Consensus 137 q~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g 170 (283)
+.|.++|++++..+-.-.|+.-.+-+..++...|
T Consensus 113 ~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~ 146 (264)
T cd06267 113 ELGHRRIAFIGGPPDLSTARERLEGYREALEEAG 146 (264)
T ss_pred HCCCceEEEecCCCccchHHHHHHHHHHHHHHcC
Confidence 3588888888766553344444444444444433
No 72
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=32.65 E-value=2.7e+02 Score=25.83 Aligned_cols=68 Identities=19% Similarity=0.192 Sum_probs=44.7
Q ss_pred CceEEEecccccchhHHHHHHHHHHHHHhhCCe-eeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 023334 140 PRAIGFFGTRNMGFMHQELIEILSYALVITKNH-IYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL 217 (283)
Q Consensus 140 ~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNh-i~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelL 217 (283)
|+.++|-|+ -=|++|-.|.|++.++-...-+. |.|.|.- -.+++-. . ..++.+.| ||+--.+|..+.+
T Consensus 130 ~~~v~iSl~-GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~---~e~l~~L-~-~~~d~i~V----SLda~~~e~~~~i 198 (322)
T PRK13762 130 PKHVAISLS-GEPTLYPYLPELIEEFHKRGFTTFLVTNGTR---PDVLEKL-E-EEPTQLYV----SLDAPDEETYKKI 198 (322)
T ss_pred CCEEEEeCC-ccccchhhHHHHHHHHHHcCCCEEEECCCCC---HHHHHHH-H-hcCCEEEE----EccCCCHHHHHHH
Confidence 778999988 78999999999999887654332 4577742 3445443 3 36666655 5565555554443
No 73
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=32.63 E-value=60 Score=28.51 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=27.8
Q ss_pred ceEEEecccccchhH---HHHHHHHHHHHHhhCCe--eeecC
Q 023334 141 RAIGFFGTRNMGFMH---QELIEILSYALVITKNH--IYTSG 177 (283)
Q Consensus 141 rrIa~lGsRhvp~~h---q~LIEllsyALvl~gNh--i~TSG 177 (283)
|+|||+|||-+|=-+ ..++|=|+--|+..|+. +|.+.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~ 43 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRS 43 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 789999999888643 56777777788887874 55443
No 74
>PF11868 DUF3388: Protein of unknown function (DUF3388); InterPro: IPR024514 This domain is found in a family of bacterial proteins that are functionally uncharacterised. Proteins in this family are typically between 261 to 275 amino acids in length and have a N-terminal ACT domain.
Probab=32.50 E-value=58 Score=29.84 Aligned_cols=89 Identities=21% Similarity=0.492 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh----c--CCCcee
Q 023334 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA----E--RPDLLT 199 (283)
Q Consensus 126 vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA----e--~P~lLT 199 (283)
||++.||. .+.|-+-|||=|.--||=+- -++|-+....+..++-| +..||-.+|. + +++ .
T Consensus 42 VDFmaEl~--K~~Gh~lIGiRGmPRVGKTE----sivAasVcAnKrW~f~S------STlikQTvRs~L~~dE~~~~--~ 107 (192)
T PF11868_consen 42 VDFMAELF--KEEGHKLIGIRGMPRVGKTE----SIVAASVCANKRWLFLS------STLIKQTVRSQLIEDEYNEN--N 107 (192)
T ss_pred HHHHHHHH--HhcCceEEeecCCCccCchh----HHHHHhhhcCceEEEee------HHHHHHHHHHHhhhcccCcC--c
Confidence 79999974 68999999999988888664 25566777777788766 3455554443 1 233 3
Q ss_pred Eeec---ccccCCChhHHHHHHHHhh-----HhcCCC
Q 023334 200 VILP---QSLKKQPPESQELLAKVKT-----VIEKPH 228 (283)
Q Consensus 200 ViLP---QSL~kQp~ESqelLe~V~h-----lVE~Pe 228 (283)
|.+= -|-.|.++.-+.++.+|+. +||+|+
T Consensus 108 ifIIDGivSt~r~~e~H~~Lvreim~lP~~KVvEHPD 144 (192)
T PF11868_consen 108 IFIIDGIVSTRRSNERHWQLVREIMRLPATKVVEHPD 144 (192)
T ss_pred EEEEeeeeeeccCCHHHHHHHHHHHcCCCceeeeCCc
Confidence 3332 2557788899999999986 789985
No 75
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=32.05 E-value=1.1e+02 Score=27.35 Aligned_cols=41 Identities=15% Similarity=0.251 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhC
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g 170 (283)
+.+.+..+-+.|.+.|.|.|. =|++|..++|++.++-...|
T Consensus 48 i~~~i~~~~~~gv~~V~ltGG--EPll~~~l~~li~~i~~~~g 88 (334)
T TIGR02666 48 IERLVRAFVGLGVRKVRLTGG--EPLLRKDLVELVARLAALPG 88 (334)
T ss_pred HHHHHHHHHHCCCCEEEEECc--cccccCCHHHHHHHHHhcCC
Confidence 445555566778999999995 48999999999998655443
No 76
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=32.04 E-value=2e+02 Score=24.57 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=54.2
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHH
Q 023334 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELL 217 (283)
Q Consensus 138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelL 217 (283)
-|.||||+-.+-..+.+.+-+ ++--..++.- .++..|.--+...+|+.+-|=||-+|+...-...++.
T Consensus 9 ~G~KrIGvA~sd~~~~~A~pl-----------~~i~~~~~~~-~~~~~l~~li~~~~~~~vVVGlP~~m~g~~~~~~~~~ 76 (141)
T COG0816 9 VGTKRIGVAVSDILGSLASPL-----------ETIKRKNGKP-QDFNALLKLVKEYQVDTVVVGLPLNMDGTEGPRAELA 76 (141)
T ss_pred cCCceEEEEEecCCCccccch-----------hhheeccccH-hhHHHHHHHHHHhCCCEEEEecCcCCCCCcchhHHHH
Confidence 488899988777766443322 1111122221 4667777888888999999999999997777777777
Q ss_pred HHHhhHhcCCCC
Q 023334 218 AKVKTVIEKPHN 229 (283)
Q Consensus 218 e~V~hlVE~PeN 229 (283)
++..+.+++--|
T Consensus 77 ~~f~~~L~~r~~ 88 (141)
T COG0816 77 RKFAERLKKRFN 88 (141)
T ss_pred HHHHHHHHHhcC
Confidence 777777765444
No 77
>PLN02778 3,5-epimerase/4-reductase
Probab=31.78 E-value=1.3e+02 Score=26.50 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=41.5
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCc
Q 023334 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDL 197 (283)
Q Consensus 138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~l 197 (283)
..+++|-|.|. .||+=.+|++.|. ..|+.+..+.+.-++...+++.++..+||.
T Consensus 7 ~~~~kiLVtG~--tGfiG~~l~~~L~----~~g~~V~~~~~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 7 SATLKFLIYGK--TGWIGGLLGKLCQ----EQGIDFHYGSGRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCCeEEEECC--CCHHHHHHHHHHH----hCCCEEEEecCccCCHHHHHHHHHhcCCCE
Confidence 45678999996 4899999988664 458888755555667788999999878875
No 78
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=31.47 E-value=70 Score=23.56 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=21.9
Q ss_pred hCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 023334 169 TKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQ 204 (283)
Q Consensus 169 ~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQ 204 (283)
..+-++|+|+++.+..+++.+... + =+|+++.
T Consensus 17 ~~~~~~~~~~t~a~~~~~~~~~~~-~---~~v~~~~ 48 (170)
T cd01494 17 NDKAVFVPSGTGANEAALLALLGP-G---DEVIVDA 48 (170)
T ss_pred CCcEEEeCCcHHHHHHHHHHhCCC-C---CEEEEee
Confidence 456788888888888888887543 2 1566654
No 79
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=31.44 E-value=2.4e+02 Score=26.22 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc---ccchhHHHHHHHH--HHHHHhhCC-eeeecCCCC-chHHHHHhh
Q 023334 128 YLQELLAIQQQGPR-AIGFFGTR---NMGFMHQELIEIL--SYALVITKN-HIYTSGASG-TNAAVIRGA 189 (283)
Q Consensus 128 ~lqELaaIQq~G~r-rIa~lGsR---hvp~~hq~LIEll--syALvl~gN-hi~TSGA~G-TNAAvIRGa 189 (283)
|..||.++++.|+. ++-..=|| +.+++...|-|.. -+.+...++ ++|..|..+ ...+|.+..
T Consensus 280 y~~el~~~~~~~~~~~~~~a~Srd~~~~~yVq~~l~~~~~~~~~~l~~~~~~vYvCG~~~~M~~~V~~~L 349 (382)
T cd06207 280 YKEELEEYEKSGVLTTLGTAFSRDQPKKVYVQDLIRENSDLVYQLLEEGAGVIYVCGSTWKMPPDVQEAF 349 (382)
T ss_pred HHHHHHHHHhCCCCceEEEEecCCCCCceEhHHHHHHCHHHHHHHHhcCCCEEEEECCcccccHHHHHHH
Confidence 55666666666653 22222233 2334433333211 112233455 777777776 555554443
No 80
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=30.96 E-value=64 Score=25.54 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNA 183 (283)
++++++. +.|-..+ ....+|=--..|.|.+..++ ..++-|+|+|++|...
T Consensus 21 ~l~~~l~--~~G~~v~---~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~ 70 (144)
T PF00994_consen 21 FLAALLE--ELGIEVI---RYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGP 70 (144)
T ss_dssp HHHHHHH--HTTEEEE---EEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSST
T ss_pred HHHHHHH--HcCCeee---EEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCccc
Confidence 5655544 3454222 22233333455566664443 3449999999999653
No 81
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=30.87 E-value=90 Score=27.10 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHhh-CCeeeecCCCCchHHHHHhhhh
Q 023334 154 MHQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGALR 191 (283)
Q Consensus 154 ~hq~LIEllsyALvl~-gNhi~TSGA~GTNAAvIRGaLr 191 (283)
++.++.+.++.-+-.. .+-++|+|+++.|.++++++..
T Consensus 60 ~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~ 98 (371)
T PRK13520 60 LEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARN 98 (371)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHh
Confidence 3456666666544332 3558888888888888887754
No 82
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=30.77 E-value=44 Score=27.76 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=32.7
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEee
Q 023334 142 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVIL 202 (283)
Q Consensus 142 rIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViL 202 (283)
||.++|.-++=++.. .+....+-|+.|.|+|+.-+.|.. +..+++++=
T Consensus 1 ~il~iG~~~iD~~~~------------~~~~~~~~GG~~~Nva~~la~lG~-~~~~i~~vG 48 (254)
T cd01937 1 KIVIIGHVTIDEIVT------------NGSGVVKPGGPATYASLTLSRLGL-TVKLVTKVG 48 (254)
T ss_pred CeEEEcceeEEEEec------------CCceEEecCchhhhHHHHHHHhCC-CeEEEEeeC
Confidence 466777766655532 244556779999999988777776 666666654
No 83
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=30.41 E-value=3.2e+02 Score=22.74 Aligned_cols=77 Identities=23% Similarity=0.283 Sum_probs=49.8
Q ss_pred ccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCC-CC----chHHHHHhhhhhcCC
Q 023334 121 KPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA-SG----TNAAVIRGALRAERP 195 (283)
Q Consensus 121 ~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA-~G----TNAAvIRGaLrAe~P 195 (283)
..++..|++.+|...=++..++|.++|++. ..+|-+...|....-.|-.-|. .| .-...|--.+++.+|
T Consensus 29 ~rv~g~dl~~~l~~~~~~~~~~ifllG~~~------~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~p 102 (172)
T PF03808_consen 29 ERVTGSDLFPDLLRRAEQRGKRIFLLGGSE------EVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGP 102 (172)
T ss_pred cccCHHHHHHHHHHHHHHcCCeEEEEeCCH------HHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCC
Confidence 445557899999887777788999999973 4455555555555322222222 22 234445556676799
Q ss_pred CceeEeec
Q 023334 196 DLLTVILP 203 (283)
Q Consensus 196 ~lLTViLP 203 (283)
+++-|-|.
T Consensus 103 div~vglG 110 (172)
T PF03808_consen 103 DIVFVGLG 110 (172)
T ss_pred CEEEEECC
Confidence 99999886
No 84
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=30.26 E-value=47 Score=28.39 Aligned_cols=74 Identities=26% Similarity=0.192 Sum_probs=49.6
Q ss_pred eeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCC-----------------------------Ch-----hHHHHH
Q 023334 172 HIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQ-----------------------------PP-----ESQELL 217 (283)
Q Consensus 172 hi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQ-----------------------------p~-----ESqelL 217 (283)
||||.-+.|-..|++.=|+|| --.=..|.+=|-|+-- .+ +.++.+
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra-~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~~ 84 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRA-LGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEGW 84 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHHH
Confidence 789999999999999999998 4456688887777751 11 223344
Q ss_pred HHHhhHhcCCCCCCCChHHHHhhhhHHHH
Q 023334 218 AKVKTVIEKPHNDHLPLIEASRLCNMDII 246 (283)
Q Consensus 218 e~V~hlVE~PeND~LpL~eAS~lCN~eII 246 (283)
+....++..++.|-|=|+|....++..+|
T Consensus 85 ~~a~~~~~~~~~dLlVLDEi~~a~~~gli 113 (159)
T cd00561 85 AFAKEAIASGEYDLVILDEINYALGYGLL 113 (159)
T ss_pred HHHHHHHhcCCCCEEEEechHhHhhCCCC
Confidence 55555666666666666666666555544
No 85
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=30.22 E-value=98 Score=29.71 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=53.7
Q ss_pred HhcCCceEEEecc-ccc--------chhHHHHHHHHHHHHHhhCCe------eeecCCCCchHHHHHhhhhhcCCCceeE
Q 023334 136 QQQGPRAIGFFGT-RNM--------GFMHQELIEILSYALVITKNH------IYTSGASGTNAAVIRGALRAERPDLLTV 200 (283)
Q Consensus 136 Qq~G~rrIa~lGs-Rhv--------p~~hq~LIEllsyALvl~gNh------i~TSGA~GTNAAvIRGaLrAe~P~lLTV 200 (283)
+..|+|.|+++=. ..+ .+......|-+-+|+-.+++. |-|-|+..-.|--|..++|. .|.-++|
T Consensus 45 ~kr~srvI~~Ihrqe~~~~~giPi~~~I~i~dse~v~raI~~~~~~~~IdLii~TpGG~v~AA~~I~~~l~~-~~~~v~v 123 (285)
T PF01972_consen 45 EKRGSRVITLIHRQERVSFLGIPIYRYIDIDDSEFVLRAIREAPKDKPIDLIIHTPGGLVDAAEQIARALRE-HPAKVTV 123 (285)
T ss_pred HHhCCEEEEEEEeccccceeccccceeEcHhhHHHHHHHHHhcCCCCceEEEEECCCCcHHHHHHHHHHHHh-CCCCEEE
Confidence 4589998887622 233 347777888888898877553 67999999999999999998 8999999
Q ss_pred eecc
Q 023334 201 ILPQ 204 (283)
Q Consensus 201 iLPQ 204 (283)
+.|.
T Consensus 124 ~VP~ 127 (285)
T PF01972_consen 124 IVPH 127 (285)
T ss_pred EECc
Confidence 9985
No 86
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=30.00 E-value=33 Score=26.13 Aligned_cols=14 Identities=14% Similarity=0.318 Sum_probs=12.5
Q ss_pred hCCeeeecCCCCch
Q 023334 169 TKNHIYTSGASGTN 182 (283)
Q Consensus 169 ~gNhi~TSGA~GTN 182 (283)
.||.+|+||-.|.+
T Consensus 6 ~g~~v~vSG~~~~~ 19 (101)
T cd06155 6 TGGLLWISNVTASE 19 (101)
T ss_pred ECCEEEEecCCCCC
Confidence 59999999999876
No 87
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=29.96 E-value=13 Score=34.13 Aligned_cols=112 Identities=23% Similarity=0.340 Sum_probs=71.3
Q ss_pred CCCcccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHH-HHHhcCCceEEEecccccc
Q 023334 77 MDGLRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELL-AIQQQGPRAIGFFGTRNMG 152 (283)
Q Consensus 77 ~~~~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELa-aIQq~G~rrIa~lGsRhvp 152 (283)
..++|-.-.++....+-|.+ .|=.+++.+++....+..-.-.-+.+ +| ++.|+. .+|+.|.-.|+=|- +...
T Consensus 66 ~~gGRv~~~dL~~~LnVd~~---~ie~~~~~i~~~~~~~~l~~gelit~~Yld~l~~Eine~Lqe~G~vsi~eLa-~~~~ 141 (272)
T PF09743_consen 66 VHGGRVNLVDLAQALNVDLD---HIERRAQEIVKSDKSLQLVQGELITDSYLDSLAEEINEKLQESGQVSISELA-KQYD 141 (272)
T ss_pred HcCCceEHHHHHHhcCcCHH---HHHHHHHHHHhCCCcEEEECCEEccHHHHHHHHHHHHHHHHHcCeEeHHHHH-HhcC
Confidence 34556666666777777766 55567777777665444433333443 56 777875 46888887777664 3333
Q ss_pred hhHHHHH-HHHHH---HH---HhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 153 FMHQELI-EILSY---AL---VITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 153 ~~hq~LI-Ellsy---AL---vl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
+--.-|. ++++. .+ .+.|+.|||.---..+-|.|||+++|
T Consensus 142 Lp~efl~~~li~~~lg~~I~g~~d~~~lyT~ayv~r~ka~iRG~l~a 188 (272)
T PF09743_consen 142 LPSEFLKEELISKRLGKIIKGRLDGDVLYTEAYVARQKARIRGALSA 188 (272)
T ss_pred CcHHHHHHHHhhhhcCcceeEEEeCCEEecHHHHHHHHHHHHHHHhc
Confidence 3333333 22222 11 34678999998899999999999998
No 88
>PRK06256 biotin synthase; Validated
Probab=29.68 E-value=2.8e+02 Score=24.90 Aligned_cols=65 Identities=8% Similarity=-0.005 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhH--HHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTRNMGFMH--QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsRhvp~~h--q~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
+++.|...+.+.|.+++.|.++-+-|... ..+.|++.+.-...+=++.+|.+. .+...++-.-+|
T Consensus 95 eI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-l~~e~l~~Lkea 161 (336)
T PRK06256 95 ELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-LTEEQAERLKEA 161 (336)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-CCHHHHHHHHHh
Confidence 48888888899999999998766655443 478888776654444456666554 455555543333
No 89
>PRK03321 putative aminotransferase; Provisional
Probab=29.56 E-value=52 Score=28.82 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=10.4
Q ss_pred CeeeecCCCCchHHHHHhhh
Q 023334 171 NHIYTSGASGTNAAVIRGAL 190 (283)
Q Consensus 171 Nhi~TSGA~GTNAAvIRGaL 190 (283)
|-++|+|+++...++++..+
T Consensus 76 ~I~~~~G~~~~l~~~~~~~~ 95 (352)
T PRK03321 76 HVAVGCGSVALCQQLVQATA 95 (352)
T ss_pred HEEECCCHHHHHHHHHHHhc
Confidence 55555555555555554443
No 90
>PRK02769 histidine decarboxylase; Provisional
Probab=29.11 E-value=81 Score=29.61 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHhhCCe---eeecCCCCchHHHHHhhhhhcCCCceeEeecc
Q 023334 154 MHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAERPDLLTVILPQ 204 (283)
Q Consensus 154 ~hq~LIEllsyALvl~gNh---i~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQ 204 (283)
+=.+.+++++.-+-..... ++|||||..|--++..|... .|+ -.||.++
T Consensus 66 ~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~-~~~-~~ii~s~ 117 (380)
T PRK02769 66 FERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL-FPD-GTLYYSK 117 (380)
T ss_pred HHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh-CCC-cEEEeCC
Confidence 3345566666555443222 78999988887666655332 333 2566665
No 91
>PLN03075 nicotianamine synthase; Provisional
Probab=29.10 E-value=1.4e+02 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=22.4
Q ss_pred HHHHHHHhc---CCceEEEecccccchhHH
Q 023334 130 QELLAIQQQ---GPRAIGFFGTRNMGFMHQ 156 (283)
Q Consensus 130 qELaaIQq~---G~rrIa~lGsRhvp~~hq 156 (283)
.|...+... ++|+|+++|+-..|+++.
T Consensus 111 lE~~~L~~~~~~~p~~VldIGcGpgpltai 140 (296)
T PLN03075 111 LEFDLLSQHVNGVPTKVAFVGSGPLPLTSI 140 (296)
T ss_pred HHHHHHHHhhcCCCCEEEEECCCCcHHHHH
Confidence 576666554 999999999999999884
No 92
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=28.97 E-value=84 Score=27.40 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhhCCeeeecC
Q 023334 158 LIEILSYALVITKNHIYTSG 177 (283)
Q Consensus 158 LIEllsyALvl~gNhi~TSG 177 (283)
.+.++..+++..|.+|+++-
T Consensus 87 a~~~~l~al~~~gd~Vlv~~ 106 (294)
T cd00615 87 SNKAVILAVCGPGDKILIDR 106 (294)
T ss_pred HHHHHHHHcCCCCCEEEEeC
Confidence 44566677777888888763
No 93
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=28.63 E-value=1.2e+02 Score=25.47 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcC---CceEEEecccccchhHHHHH-HHHHHHHHhhC-CeeeecC
Q 023334 128 YLQELLAIQQQG---PRAIGFFGTRNMGFMHQELI-EILSYALVITK-NHIYTSG 177 (283)
Q Consensus 128 ~lqELaaIQq~G---~rrIa~lGsRhvp~~hq~LI-EllsyALvl~g-Nhi~TSG 177 (283)
+++++..+...+ .+.|.|.| -=|++|..++ |++.|+-...- ..|.|+|
T Consensus 51 i~~~i~~~~~~~~~~~~~I~~~G--GEPll~~~~~~~li~~~~~~g~~~~i~TNG 103 (235)
T TIGR02493 51 LIKEVGSYKDFFKASGGGVTFSG--GEPLLQPEFLSELFKACKELGIHTCLDTSG 103 (235)
T ss_pred HHHHHHHhHHHHhcCCCeEEEeC--cccccCHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 555555554432 25799999 7799999865 88888765432 2455666
No 94
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=28.31 E-value=74 Score=26.88 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNA 183 (283)
++.++ +++.|-+.+. .+.+|==...|.+.+.+++. ...-|+|||++|...
T Consensus 23 ~l~~~--L~~~G~~v~~---~~~v~Dd~~~I~~~l~~~~~-~~dlVIttGG~G~t~ 72 (170)
T cd00885 23 FLAKE--LAELGIEVYR---VTVVGDDEDRIAEALRRASE-RADLVITTGGLGPTH 72 (170)
T ss_pred HHHHH--HHHCCCEEEE---EEEeCCCHHHHHHHHHHHHh-CCCEEEECCCCCCCC
Confidence 44443 4456654322 33455556778888888875 578999999999765
No 95
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=28.25 E-value=71 Score=25.02 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCce--EEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCch
Q 023334 128 YLQELLAIQQQGPRA--IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN 182 (283)
Q Consensus 128 ~lqELaaIQq~G~rr--Ia~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTN 182 (283)
++.++ +++.|-.. ..++. ==...|.|.+.+++. .-+-|+|+|++|.-
T Consensus 22 ~l~~~--l~~~G~~~~~~~~v~-----Dd~~~I~~~l~~~~~-~~dliittGG~g~g 70 (135)
T smart00852 22 ALAEL--LTELGIEVTRYVIVP-----DDKEAIKEALREALE-RADLVITTGGTGPG 70 (135)
T ss_pred HHHHH--HHHCCCeEEEEEEeC-----CCHHHHHHHHHHHHh-CCCEEEEcCCCCCC
Confidence 66666 56677543 33332 223445566666654 46899999999954
No 96
>COG5039 Exopolysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=28.08 E-value=1.7e+02 Score=28.96 Aligned_cols=67 Identities=33% Similarity=0.398 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCC-ceEEEecccccchh---HHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 023334 128 YLQELLAIQQQGP-RAIGFFGTRNMGFM---HQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 203 (283)
Q Consensus 128 ~lqELaaIQq~G~-rrIa~lGsRhvp~~---hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLP 203 (283)
.++|+..|-..-+ --|+|-|.-|+|=+ ||+.-|.+- +. =||-=+|+||
T Consensus 74 s~se~~~~~s~~~e~~i~~~GGGNlGDLypd~q~fRe~Ii---------------------------st-f~d~~iI~lP 125 (339)
T COG5039 74 SASELIEIKSDIPEDIIFFTGGGNLGDLYPDYQNFREKII---------------------------ST-FPDYKIIILP 125 (339)
T ss_pred chhhhhhhhcCCccceEEEeCCCchhhcchhhHHHHHHHH---------------------------Hh-CCCCceEecc
Confidence 5677777766655 56777788887744 566665432 22 7899999999
Q ss_pred ccccCCChhHHHHHHHHhhHhc
Q 023334 204 QSLKKQPPESQELLAKVKTVIE 225 (283)
Q Consensus 204 QSL~kQp~ESqelLe~V~hlVE 225 (283)
||.-=|- |+.|+|-..+--
T Consensus 126 QSiyF~d---~~nLkkaa~iyn 144 (339)
T COG5039 126 QSIYFQD---QKNLKKAADIYN 144 (339)
T ss_pred ceeeecc---HHHHHHHHHHHh
Confidence 9998877 777887776653
No 97
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=28.01 E-value=1.2e+02 Score=28.13 Aligned_cols=21 Identities=14% Similarity=0.309 Sum_probs=11.1
Q ss_pred HhcCCCCC---CCChHHHHhhhhH
Q 023334 223 VIEKPHND---HLPLIEASRLCNM 243 (283)
Q Consensus 223 lVE~PeND---~LpL~eAS~lCN~ 243 (283)
++|.|.|- -.++.+-..+|.+
T Consensus 151 ~ie~p~NptG~v~dl~~I~~la~~ 174 (390)
T PRK08133 151 FLETPSNPLTELADIAALAEIAHA 174 (390)
T ss_pred EEECCCCCCCCcCCHHHHHHHHHH
Confidence 45667663 3445555555543
No 98
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=27.98 E-value=63 Score=29.27 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=14.9
Q ss_pred hcCCC---CCCCChHHHHhhhhHH
Q 023334 224 IEKPH---NDHLPLIEASRLCNMD 244 (283)
Q Consensus 224 VE~Pe---ND~LpL~eAS~lCN~e 244 (283)
+|.|. .+-.|+.+-..+|.+.
T Consensus 184 i~~~~n~tG~~~~l~~i~~l~~~~ 207 (410)
T PRK13392 184 FESVYSMDGDIAPIEAICDLADRY 207 (410)
T ss_pred EeCCCCCCcccccHHHHHHHHHHc
Confidence 45554 5668888888888763
No 99
>PLN02822 serine palmitoyltransferase
Probab=27.92 E-value=60 Score=31.22 Aligned_cols=47 Identities=23% Similarity=0.224 Sum_probs=31.8
Q ss_pred EEecccccc---hhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhh
Q 023334 144 GFFGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALR 191 (283)
Q Consensus 144 a~lGsRhvp---~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLr 191 (283)
+.-|+|+.. =.|.+|-|-|+.-+--...-+||+|++ +|.++|+....
T Consensus 142 g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s~G~~-a~~sai~a~~~ 191 (481)
T PLN02822 142 GSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLS-TIFSVIPAFCK 191 (481)
T ss_pred CCcccCccccCHHHHHHHHHHHHHHhCCCCEEEECCHHH-HHHHHHHHhCC
Confidence 334556532 247777777777666566677788887 68899996654
No 100
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=27.75 E-value=57 Score=27.31 Aligned_cols=32 Identities=38% Similarity=0.590 Sum_probs=24.5
Q ss_pred hcCCC---ceeEeecc----cccCCChhHHHHHHHHhhH
Q 023334 192 AERPD---LLTVILPQ----SLKKQPPESQELLAKVKTV 223 (283)
Q Consensus 192 Ae~P~---lLTViLPQ----SL~kQp~ESqelLe~V~hl 223 (283)
|+||+ .-||+.|+ |-+--....|.+||||.|+
T Consensus 14 Aqd~dGrCvCTVvaP~q~~CSrD~r~~qlrqllekVqNm 52 (101)
T PF12308_consen 14 AQDPDGRCVCTVVAPQQNLCSRDARSRQLRQLLEKVQNM 52 (101)
T ss_pred ccCCCCCEEEEEecCCcchhccCccHHHHHHHHHHHHHH
Confidence 34555 57999997 5566677889999999986
No 101
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=27.72 E-value=3e+02 Score=24.76 Aligned_cols=29 Identities=7% Similarity=0.057 Sum_probs=18.8
Q ss_pred CCceEEEecccccchhHHHHHHHHHHHHHhhCCeee
Q 023334 139 GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174 (283)
Q Consensus 139 G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~ 174 (283)
+.|+|.|+|+.. +--++..|+...|..++
T Consensus 11 ~~~~ilIiG~g~-------~~~~~~~a~~~~G~~v~ 39 (395)
T PRK09288 11 SATRVMLLGSGE-------LGKEVAIEAQRLGVEVI 39 (395)
T ss_pred CCCEEEEECCCH-------HHHHHHHHHHHCCCEEE
Confidence 567999999973 22334455556676655
No 102
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=27.44 E-value=1.2e+02 Score=26.80 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=26.8
Q ss_pred ecccccc---hhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 146 FGTRNMG---FMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 146 lGsRhvp---~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
=++||+. -.|.+|-|-++.-+- ..+-|+|+|++..|.+++.+.++.
T Consensus 73 ~~s~~~~G~~~~~~~le~~ia~~~g-~~~~ii~~~~~~a~~~~~~~l~~~ 121 (393)
T TIGR01822 73 SSVRFICGTQDIHKELEAKIAAFLG-TEDTILYASCFDANGGLFETLLGA 121 (393)
T ss_pred CCcCcccCChHHHHHHHHHHHHHhC-CCcEEEECchHHHHHHHHHHhCCC
Confidence 3555442 235566666664333 346777887777777777666543
No 103
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=27.41 E-value=85 Score=27.36 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHhh-CCeeeecCCCCchHHHHHhhhhh---cCCCceeEeecc
Q 023334 153 FMHQELIEILSYALVIT-KNHIYTSGASGTNAAVIRGALRA---ERPDLLTVILPQ 204 (283)
Q Consensus 153 ~~hq~LIEllsyALvl~-gNhi~TSGA~GTNAAvIRGaLrA---e~P~lLTViLPQ 204 (283)
-+++++.|.++.-+-.. .+-++|+|++..|.++++.+... .+| --+|++|.
T Consensus 59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-g~~vl~~~ 113 (373)
T TIGR03812 59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKR-TPNIIVPE 113 (373)
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCC-CcEEEECC
Confidence 34678888887666543 45688999888777777654321 122 13577764
No 104
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=27.09 E-value=4.2e+02 Score=23.03 Aligned_cols=119 Identities=20% Similarity=0.244 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCceEEEeccc--ccchhHHHHHHHHHHHHHhhCCe---eeecCCCCchHHHHHhhhhhc--CCCceeE
Q 023334 128 YLQELLAIQQQGPRAIGFFGTR--NMGFMHQELIEILSYALVITKNH---IYTSGASGTNAAVIRGALRAE--RPDLLTV 200 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsR--hvp~~hq~LIEllsyALvl~gNh---i~TSGA~GTNAAvIRGaLrAe--~P~lLTV 200 (283)
+.+-+.-+-+.|-+-|.++||- -..+.-.+-.+++..+....+.+ |+.-|+..|.. +|+=|-.|+ ..+-+-|
T Consensus 20 ~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~-~i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 20 LRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE-AIELARHAEEAGADGVLV 98 (281)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHH-HHHHHHHHHHcCCCEEEE
Confidence 4444555556799999999983 34455555566665555544433 34444444443 444333333 4555555
Q ss_pred eecccccCCChhHHHHHHHHhhHhcC----------CC--CCCCChHHHHhhhhHHHHhhhceeeEEE
Q 023334 201 ILPQSLKKQPPESQELLAKVKTVIEK----------PH--NDHLPLIEASRLCNMDIISHVQQVICFA 256 (283)
Q Consensus 201 iLPQSL~kQp~ESqelLe~V~hlVE~----------Pe--ND~LpL~eAS~lCN~eIIsrcqQlICFA 256 (283)
+|...-+. ..+++++-...+.|. |. .-.|+.....+|+. +..++++=
T Consensus 99 -~pP~y~~~--~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~------~~~v~giK 157 (281)
T cd00408 99 -VPPYYNKP--SQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAE------HPNIVGIK 157 (281)
T ss_pred -CCCcCCCC--CHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhc------CCCEEEEE
Confidence 44455442 235566666666664 22 35666666666652 45666654
No 105
>PRK08361 aspartate aminotransferase; Provisional
Probab=26.32 E-value=79 Score=28.37 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhCCeeeec
Q 023334 156 QELIEILSYALVITKNHIYTS 176 (283)
Q Consensus 156 q~LIEllsyALvl~gNhi~TS 176 (283)
++.+.++.+++...|.+|++.
T Consensus 103 ~~al~~~~~~l~~~g~~Vlv~ 123 (391)
T PRK08361 103 YEATYLAFESLLEEGDEVIIP 123 (391)
T ss_pred HHHHHHHHHHhcCCCCEEEEc
Confidence 455566666665556655544
No 106
>PRK05406 LamB/YcsF family protein; Provisional
Probab=26.12 E-value=62 Score=30.12 Aligned_cols=59 Identities=31% Similarity=0.442 Sum_probs=41.3
Q ss_pred ecccccchhHHHHHHHHHHHHHhh----------CCeeeecCC--------CCchHHHHHhhhhhcCCCceeEeeccc
Q 023334 146 FGTRNMGFMHQELIEILSYALVIT----------KNHIYTSGA--------SGTNAAVIRGALRAERPDLLTVILPQS 205 (283)
Q Consensus 146 lGsRhvp~~hq~LIEllsyALvl~----------gNhi~TSGA--------~GTNAAvIRGaLrAe~P~lLTViLPQS 205 (283)
||-|+|.+.+.+|.+++.|=+..- =+||=.=|| .....||+++.-+. +|+|.-+.+|.|
T Consensus 72 FGRR~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~-~~~l~l~~~~~s 148 (246)
T PRK05406 72 FGRRNMDLSPEELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAV-DPSLILVGLAGS 148 (246)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHh-CCCcEEEecCCh
Confidence 899999999999999999854321 134444444 23344777755555 899888888876
No 107
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=26.01 E-value=84 Score=25.84 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=22.9
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeee
Q 023334 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIY 174 (283)
Q Consensus 136 Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~ 174 (283)
++.+.-+|+|+|.-+|+.. |+++|...||+|.
T Consensus 6 ~~~~~l~I~iIGaGrVG~~-------La~aL~~ag~~v~ 37 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGTA-------LARALARAGHEVV 37 (127)
T ss_dssp ------EEEEECTSCCCCH-------HHHHHHHTTSEEE
T ss_pred cCCCccEEEEECCCHHHHH-------HHHHHHHCCCeEE
Confidence 3677789999999999984 7888888999874
No 108
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=25.80 E-value=1.7e+02 Score=27.26 Aligned_cols=73 Identities=23% Similarity=0.286 Sum_probs=42.6
Q ss_pred HHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeee---cCCCCchHHHHHhhhhhcCCCceeEeecccccC
Q 023334 132 LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT---SGASGTNAAVIRGALRAERPDLLTVILPQSLKK 208 (283)
Q Consensus 132 LaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~T---SGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~k 208 (283)
+++|. -++.|.|+|||.. .|.+|+-.+. .. |-+-++ .|++=||... ... ..|++|-|+
T Consensus 65 i~~i~--~~~~Il~Vstr~~---~~~~V~k~A~--~t-g~~~i~~Rw~pGtlTN~~~--~~f--~~P~llIV~------- 125 (249)
T PTZ00254 65 IAAIE--NPADVVVVSSRPY---GQRAVLKFAQ--YT-GASAIAGRFTPGTFTNQIQ--KKF--MEPRLLIVT------- 125 (249)
T ss_pred HHHHh--CCCcEEEEEcCHH---HHHHHHHHHH--Hh-CCeEECCcccCCCCCCccc--ccc--CCCCEEEEe-------
Confidence 44553 3677999999973 3556655433 22 333322 4667788732 222 257766554
Q ss_pred CChhHHHHHHHHhhHhcCCCCCCCChHHHHhh
Q 023334 209 QPPESQELLAKVKTVIEKPHNDHLPLIEASRL 240 (283)
Q Consensus 209 Qp~ESqelLe~V~hlVE~PeND~LpL~eAS~l 240 (283)
.|..|+-++-||+++
T Consensus 126 -----------------Dp~~d~qAI~EA~~l 140 (249)
T PTZ00254 126 -----------------DPRTDHQAIREASYV 140 (249)
T ss_pred -----------------CCCcchHHHHHHHHh
Confidence 567777777777764
No 109
>PRK14072 6-phosphofructokinase; Provisional
Probab=25.65 E-value=34 Score=33.12 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=12.4
Q ss_pred eeecCC--CCchHHHHHhhhh
Q 023334 173 IYTSGA--SGTNAAVIRGALR 191 (283)
Q Consensus 173 i~TSGA--~GTNAAvIRGaLr 191 (283)
|+|||+ .|.||| |||+.+
T Consensus 8 IltsGGdapGmNaa-Ir~vv~ 27 (416)
T PRK14072 8 YAQSGGPTAVINAS-AAGVIE 27 (416)
T ss_pred EEccCCchHHHHHH-HHHHHH
Confidence 689997 799974 344443
No 110
>PRK07324 transaminase; Validated
Probab=25.64 E-value=63 Score=29.13 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=12.2
Q ss_pred CCeeeecCCCCchHHHHHhhhh
Q 023334 170 KNHIYTSGASGTNAAVIRGALR 191 (283)
Q Consensus 170 gNhi~TSGA~GTNAAvIRGaLr 191 (283)
.|-++|+|+++.+..++++.+.
T Consensus 81 ~~vi~t~G~~~al~~~~~~l~~ 102 (373)
T PRK07324 81 ENILQTNGATGANFLVLYALVE 102 (373)
T ss_pred hhEEEcCChHHHHHHHHHHhCC
Confidence 3455566666555555555543
No 111
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=25.43 E-value=48 Score=30.87 Aligned_cols=52 Identities=23% Similarity=0.480 Sum_probs=36.7
Q ss_pred ccCCChhHHHH-HHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCcee
Q 023334 121 KPVPDVDYLQE-LLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLT 199 (283)
Q Consensus 121 ~~~p~vD~lqE-LaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLT 199 (283)
..+|=++.+.| ..+|+..|-||+|+||||- -|. ..+-|+.|.+.. ++
T Consensus 97 ~~iPllhIidaTa~~ik~~g~kkvgLLgT~~--------------Tm~---------------~~fY~~~l~~~g---ie 144 (230)
T COG1794 97 VGIPLLHIIDATAKAIKAAGAKKVGLLGTRF--------------TME---------------QGFYRKRLEEKG---IE 144 (230)
T ss_pred cCCCeehHHHHHHHHHHhcCCceeEEeeccc--------------hHH---------------hHHHHHHHHHCC---ce
Confidence 35666666655 4578889999999999982 222 236678887733 88
Q ss_pred Eeecc
Q 023334 200 VILPQ 204 (283)
Q Consensus 200 ViLPQ 204 (283)
||.|.
T Consensus 145 vvvPd 149 (230)
T COG1794 145 VVVPD 149 (230)
T ss_pred EecCC
Confidence 99885
No 112
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=25.40 E-value=81 Score=26.78 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=26.0
Q ss_pred ceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 141 RAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 141 rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
.+||++|.-++|.. +|-+|+..||+++- -=+|...|...-+.
T Consensus 1 M~I~ViGlGyvGl~-------~A~~lA~~G~~V~g---~D~~~~~v~~l~~g 42 (185)
T PF03721_consen 1 MKIAVIGLGYVGLP-------LAAALAEKGHQVIG---VDIDEEKVEALNNG 42 (185)
T ss_dssp -EEEEE--STTHHH-------HHHHHHHTTSEEEE---E-S-HHHHHHHHTT
T ss_pred CEEEEECCCcchHH-------HHHHHHhCCCEEEE---EeCChHHHHHHhhc
Confidence 37999999999986 57788888888873 23455555543333
No 113
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=25.29 E-value=2.4e+02 Score=19.69 Aligned_cols=118 Identities=12% Similarity=0.190 Sum_probs=64.3
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHHh-hCCeeeecCCCCchHHHHHhhhh---------hcCCCceeEeeccc
Q 023334 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALVI-TKNHIYTSGASGTNAAVIRGALR---------AERPDLLTVILPQS 205 (283)
Q Consensus 136 Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl-~gNhi~TSGA~GTNAAvIRGaLr---------Ae~P~lLTViLPQS 205 (283)
+..+.+.+.|.|..-+|=++ |+..+.+.+.. ..+.++.+.....+...+.+... .....--.|++-.-
T Consensus 15 ~~~~~~~v~i~G~~G~GKT~--l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe 92 (151)
T cd00009 15 ELPPPKNLLLYGPPGTGKTT--LARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDE 92 (151)
T ss_pred hCCCCCeEEEECCCCCCHHH--HHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeC
Confidence 44467789999999999884 66666666543 45566666665555554443332 01122234555556
Q ss_pred ccCCChhHHHHHHHHhhHhcCC--CCCCCChHHHHhhh-----hHHHHhhhceeeEE
Q 023334 206 LKKQPPESQELLAKVKTVIEKP--HNDHLPLIEASRLC-----NMDIISHVQQVICF 255 (283)
Q Consensus 206 L~kQp~ESqelLe~V~hlVE~P--eND~LpL~eAS~lC-----N~eIIsrcqQlICF 255 (283)
.++-+++..+.+.+++...... .+...++..++.-. +..+.+|+++.|.|
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 93 IDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred hhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 6655666665555555544332 12334443333322 24566666655544
No 114
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=25.20 E-value=92 Score=32.06 Aligned_cols=57 Identities=30% Similarity=0.471 Sum_probs=43.4
Q ss_pred EEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeE-eeccc
Q 023334 143 IGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTV-ILPQS 205 (283)
Q Consensus 143 Ia~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTV-iLPQS 205 (283)
|-|+-|.|-+ =.+-++-+|.-...-||--|+-||-.-|.-|.||. +-++++| ++|--
T Consensus 95 V~Ivktd~~g-----qak~l~e~~~t~~Dii~VaGGDGT~~eVVTGi~Rr-r~~~~pv~~~P~G 152 (535)
T KOG4435|consen 95 VDIVKTDNQG-----QAKALAEAVDTQEDIIYVAGGDGTIGEVVTGIFRR-RKAQLPVGFYPGG 152 (535)
T ss_pred EEEEecCcHH-----HHHHHHHHhccCCCeEEEecCCCcHHHhhHHHHhc-ccccCceeeccCc
Confidence 4455555543 34666667777779999999999999999999999 6888887 55643
No 115
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.19 E-value=1.9e+02 Score=22.96 Aligned_cols=58 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred eEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCch---------HHHHHhhhhhcCCCceeEee
Q 023334 142 AIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTN---------AAVIRGALRAERPDLLTVIL 202 (283)
Q Consensus 142 rIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTN---------AAvIRGaLrAe~P~lLTViL 202 (283)
||.|+|.-+.-=+--.+.+.+ ....+.+++.-|..|+- .+-++..+...+|+++.+.+
T Consensus 1 ril~iGDS~~~g~~~~l~~~~---~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~pd~vii~~ 67 (200)
T cd01829 1 RVLVIGDSLAQGLAPGLLRAL---ADNPGIRVINRSKGSSGLVRPDFFDWPEKLKELIAEEKPDVVVVFL 67 (200)
T ss_pred CEEEEechHHHHHHHHHHHHh---ccCCCcEEEECccccccccCCCcCCHHHHHHHHHhcCCCCEEEEEe
Confidence 577888776532222333322 23456667776655432 13466667777999888773
No 116
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=25.18 E-value=53 Score=25.40 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=25.2
Q ss_pred HHHHHHHhhHhcCCCCCCCChHHHHhhhh--HHHHhhhce
Q 023334 214 QELLAKVKTVIEKPHNDHLPLIEASRLCN--MDIISHVQQ 251 (283)
Q Consensus 214 qelLe~V~hlVE~PeND~LpL~eAS~lCN--~eIIsrcqQ 251 (283)
-+.++++..+|++=++..+||.++-.+=. .+++..|++
T Consensus 13 Eea~~~LEeIv~~LE~~~l~Lees~~lyeeg~~L~k~C~~ 52 (80)
T PRK00977 13 EEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQK 52 (80)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566666667777788999999877644 244555544
No 117
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.16 E-value=4.2e+02 Score=22.36 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=20.7
Q ss_pred HHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhC
Q 023334 134 AIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITK 170 (283)
Q Consensus 134 aIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~g 170 (283)
.+-+.|.|+|||+|+..-....+.-.+=...|+...|
T Consensus 112 ~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~a~~~~g 148 (269)
T cd06287 112 HLRAQGARQIALIVGSARRNSYLEAEAAYRAFAAEHG 148 (269)
T ss_pred HHHHcCCCcEEEEeCCcccccHHHHHHHHHHHHHHcC
Confidence 4557899999999653222233344444444554433
No 118
>PF14838 INTS5_C: Integrator complex subunit 5 C-terminus
Probab=25.00 E-value=19 Score=37.85 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHhhHhcCCCCCCCC-hHHHHhhhh
Q 023334 209 QPPESQELLAKVKTVIEKPHNDHLP-LIEASRLCN 242 (283)
Q Consensus 209 Qp~ESqelLe~V~hlVE~PeND~Lp-L~eAS~lCN 242 (283)
+|.|...+|..+.++++.-+.+..+ ...++.++.
T Consensus 272 t~~e~~qLl~NL~~L~k~eks~~~~~~~~~~~l~~ 306 (696)
T PF14838_consen 272 TPTEATQLLQNLALLAKWEKSGNVPPASMSSQLTQ 306 (696)
T ss_pred CcHHHHHHHHHHHHHHHHhhcCCccchhHHHHHHH
Confidence 8999999999999999988888888 556665553
No 119
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=24.85 E-value=91 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.061 Sum_probs=28.8
Q ss_pred HHhcCCceEEEecccccchhHHHHHHHHHHHHH-hhCCeeeecCCCCchH
Q 023334 135 IQQQGPRAIGFFGTRNMGFMHQELIEILSYALV-ITKNHIYTSGASGTNA 183 (283)
Q Consensus 135 IQq~G~rrIa~lGsRhvp~~hq~LIEllsyALv-l~gNhi~TSGA~GTNA 183 (283)
+++.|-..+ . ..++|==...|.+.+..++. ..-.-|+|||++|.-.
T Consensus 31 L~~~G~~v~-~--~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~ 77 (163)
T TIGR02667 31 LTEAGHRLA-D--RAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTG 77 (163)
T ss_pred HHHCCCeEE-E--EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 556664321 1 22344345567777777764 4678999999999753
No 120
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.65 E-value=1.5e+02 Score=28.07 Aligned_cols=41 Identities=12% Similarity=0.203 Sum_probs=27.0
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecc-cccchhHHHHH
Q 023334 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGT-RNMGFMHQELI 159 (283)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~G~rrIa~lGs-Rhvp~~hq~LI 159 (283)
+++++.= +| ++++|.+|++ .|++.|+++++ .+.+..+..+.
T Consensus 81 ~~~~isWdeAl~~ia~~l~~i~~~~G~~~i~~~~~~~~~~~~~~~~~ 127 (461)
T cd02750 81 KWKRISWDEALELIADAIIDTIKKYGPDRVIGFSPIPAMSMVSYAAG 127 (461)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHhCCceEEeeccCCcccchhhHHH
Confidence 4666652 56 6778888865 59999999876 44554444443
No 121
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=24.62 E-value=70 Score=29.82 Aligned_cols=30 Identities=17% Similarity=0.274 Sum_probs=18.3
Q ss_pred HHHHHHHhcCC---ceEEEecccccchhHHHHH
Q 023334 130 QELLAIQQQGP---RAIGFFGTRNMGFMHQELI 159 (283)
Q Consensus 130 qELaaIQq~G~---rrIa~lGsRhvp~~hq~LI 159 (283)
.|+.++...+. +||+|+||--+|++-..|.
T Consensus 108 lE~~~l~~~~~~~p~rVaFIGSGPLPlT~i~la 140 (276)
T PF03059_consen 108 LEYAALRIHAGDPPSRVAFIGSGPLPLTSIVLA 140 (276)
T ss_dssp HHHH-HTT--TT---EEEEE---SS-HHHHHHH
T ss_pred HHHHHHhhcCCcccceEEEEcCCCcchHHHHHH
Confidence 68888877654 6999999999999977665
No 122
>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=24.41 E-value=1.9e+02 Score=27.81 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred hh-HHHHHHHHHh-cCCceEEEeccc
Q 023334 126 VD-YLQELLAIQQ-QGPRAIGFFGTR 149 (283)
Q Consensus 126 vD-~lqELaaIQq-~G~rrIa~lGsR 149 (283)
+| +++.|.+|++ .|+..|+++++.
T Consensus 75 l~~ia~kl~~i~~~~G~~~i~~~~g~ 100 (539)
T cd02762 75 FDEIAERLRAIRARHGGDAVGVYGGN 100 (539)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 66 7788888876 699999999654
No 123
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=24.21 E-value=29 Score=37.13 Aligned_cols=109 Identities=22% Similarity=0.303 Sum_probs=64.1
Q ss_pred cccccccccccccCCccccCCCCccchhhhcccceeeecccccCCC--hh-HHHHHHH-HHhcCCceEEEeccc-ccc--
Q 023334 80 LRSEEENVIGMFGSDEDVGTQIPTQAQSVVEGSGAVMVSEFKPVPD--VD-YLQELLA-IQQQGPRAIGFFGTR-NMG-- 152 (283)
Q Consensus 80 ~~~~~~~~~~~f~~d~~~~~~iptq~~~vv~g~~~v~~~~~~~~p~--vD-~lqELaa-IQq~G~rrIa~lGsR-hvp-- 152 (283)
+|-.-.++....+-|-+ .|=.+++.||.....+..-.-..+-+ +| +++|+.. +|+.|.=.|+=|-.+ +.|
T Consensus 73 GRvnlvdLa~~LnVD~~---hiEr~~~~iv~~d~~~~l~~GeLit~~Yld~iaeEIne~LqE~G~isI~eLa~~~~Lpse 149 (803)
T PLN03083 73 GRVSLVDLADTIGVDLY---HVERQAQQVVSDDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIALAELARQLQVGSE 149 (803)
T ss_pred CCeeHHHHhhhcCCCHH---HHHHHHHHHhcCCCceEEecCEecchHHHHHHHHHHHHHHHHcCcChHHHHHHhcCChHH
Confidence 45555566666666665 56667777776643333322222222 45 6777754 788887777655433 222
Q ss_pred hhHHHHHHHHHHHHH---hhCCeeeecCCCCchHHHHHhhhhh
Q 023334 153 FMHQELIEILSYALV---ITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 153 ~~hq~LIEllsyALv---l~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
|+-..|.+-+. ... +.||.|||.-=-....|.||||++|
T Consensus 150 fl~~~l~~rlG-~iI~g~~~g~~lyT~aYv~r~~a~vRG~l~A 191 (803)
T PLN03083 150 LVTSMLEPRLG-TIVKARLEGGQLYTPAYVARVTAMVRGAARG 191 (803)
T ss_pred HHHHHHHHHhc-cceEEEecCCEEecHHHHHHHHHHHHHHHHH
Confidence 23233322222 111 4689999976677778999999998
No 124
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.88 E-value=5.6e+02 Score=24.41 Aligned_cols=134 Identities=15% Similarity=0.213 Sum_probs=74.6
Q ss_pred hHHHHHHHHHhcCCceEEEecccccc-hh-----HHHHHHHHHHHHHhhCC-e--eeecCCCCchHHHHHhhhhhcCCC-
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTRNMG-FM-----HQELIEILSYALVITKN-H--IYTSGASGTNAAVIRGALRAERPD- 196 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsRhvp-~~-----hq~LIEllsyALvl~gN-h--i~TSGA~GTNAAvIRGaLrAe~P~- 196 (283)
+++.|+..+.++|.|.|.|.|.- +. +- ...+.+++....-..|- + +.++-....+--.|+ +|+. .+.
T Consensus 180 ~Iv~Ei~~l~~~G~~ei~l~~~~-~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~-~l~~-~~~~ 256 (439)
T PRK14328 180 DIIAEIKELVSEGYKEVTLLGQN-VNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIE-AIAD-CDKV 256 (439)
T ss_pred HHHHHHHHHHHCCCcEEEEeccc-cCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHH-HHHh-CCCc
Confidence 48999999999999999888753 22 11 13456666544333443 2 334445555666664 4432 232
Q ss_pred ceeEeec-ccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHHhhhhHH---HHhhhceeeEEEeeCchHHHHHHHHHHh
Q 023334 197 LLTVILP-QSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMD---IISHVQQVICFAFHDSRLLMETCQEAKN 272 (283)
Q Consensus 197 lLTViLP-QSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS~lCN~e---IIsrcqQlICFAFHDS~tLLetC~eAe~ 272 (283)
.-.+-+| ||.+. +|+..+-++.+-. -..+|-+.+... |-=.++=++.|---+.+.+.+|.+.+++
T Consensus 257 ~~~l~iglQSgsd----------~vLk~M~R~~~~~-~~~~~i~~lr~~~~~i~i~~d~IvG~PgET~ed~~~tl~~i~~ 325 (439)
T PRK14328 257 CEHIHLPVQSGSN----------RILKKMNRHYTRE-YYLELVEKIKSNIPDVAITTDIIVGFPGETEEDFEETLDLVKE 325 (439)
T ss_pred CceeeeCCCcCCH----------HHHHhCCCCCCHH-HHHHHHHHHHHhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 3466676 77654 2333333332110 112222222221 1114567778877888899999999988
Q ss_pred cc
Q 023334 273 LR 274 (283)
Q Consensus 273 ~~ 274 (283)
++
T Consensus 326 l~ 327 (439)
T PRK14328 326 VR 327 (439)
T ss_pred cC
Confidence 75
No 125
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=23.86 E-value=81 Score=29.78 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchH
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNA 183 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNA 183 (283)
+++++ +++.|-.. ...+.+|==+..|.|.+..++...-+-|+|||++|...
T Consensus 179 ~L~~~--L~~~G~~v---~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~ 229 (312)
T PRK03604 179 LIVEG--LEEAGFEV---SHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGP 229 (312)
T ss_pred HHHHH--HHHCCCEE---EEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCC
Confidence 55655 56667542 33445565677888888888766679999999999865
No 126
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=23.85 E-value=2.7e+02 Score=24.03 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=36.8
Q ss_pred HhcCCceEEEecccccchhHHHHHHHHHHHHH--hhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeec
Q 023334 136 QQQGPRAIGFFGTRNMGFMHQELIEILSYALV--ITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILP 203 (283)
Q Consensus 136 Qq~G~rrIa~lGsRhvp~~hq~LIEllsyALv--l~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLP 203 (283)
.+.|.|+|+++... -++-. ...|.+..++- ..+...+..|.+-.... |. .+++.+|+.+.+..+
T Consensus 130 ~~~g~~~vail~~~-~~~g~-~~~~~~~~~~~~~v~~~~~~~~~~~d~~~~-i~-~l~~~~pd~v~~~~~ 195 (333)
T cd06359 130 QDKGYKRVFLIAPN-YQAGK-DALAGFKRTFKGEVVGEVYTKLGQLDFSAE-LA-QIRAAKPDAVFVFLP 195 (333)
T ss_pred HHhCCCeEEEEecC-chhhH-HHHHHHHHHhCceeeeeecCCCCCcchHHH-HH-HHHhCCCCEEEEEcc
Confidence 45689999999864 45643 45566655541 12223333444333333 33 366669998887644
No 127
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=23.85 E-value=1.4e+02 Score=29.63 Aligned_cols=41 Identities=10% Similarity=0.160 Sum_probs=31.5
Q ss_pred hh-HHHHHHHHHhcCCceEEEecccccch-hHHHHHHHHHHHH
Q 023334 126 VD-YLQELLAIQQQGPRAIGFFGTRNMGF-MHQELIEILSYAL 166 (283)
Q Consensus 126 vD-~lqELaaIQq~G~rrIa~lGsRhvp~-~hq~LIEllsyAL 166 (283)
.| +++|..++.+.|-++|++.|.+|-+- .-..+.|++....
T Consensus 117 ~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~ 159 (469)
T PRK09613 117 QEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIY 159 (469)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 45 99999999999999999999999443 3455666665444
No 128
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=23.79 E-value=62 Score=26.50 Aligned_cols=16 Identities=19% Similarity=0.573 Sum_probs=13.3
Q ss_pred HHHH-hcCCceEEEecc
Q 023334 133 LAIQ-QQGPRAIGFFGT 148 (283)
Q Consensus 133 aaIQ-q~G~rrIa~lGs 148 (283)
..++ ..|-++||+|||
T Consensus 16 ~~l~~k~gv~~~~vFGS 32 (97)
T COG1669 16 PELKEKYGVKRVAVFGS 32 (97)
T ss_pred HHHHHHhCCceEEEeee
Confidence 3456 789999999997
No 129
>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=23.71 E-value=1.7e+02 Score=30.14 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=33.8
Q ss_pred ccccCC---Chh-HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecC
Q 023334 119 EFKPVP---DVD-YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177 (283)
Q Consensus 119 ~~~~~p---~vD-~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSG 177 (283)
+++++. .+| ++++|.+|+.+|++.|++++++... +.+...+.. ++.-+++.+.|
T Consensus 69 ~f~~ISWDEAld~IA~kL~~i~~~gp~~ia~~~g~~~~---~~l~~~f~~--~lGt~n~~~~~ 126 (679)
T cd02763 69 QFEEIEWEEAFSIATKRLKAARATDPKKFAFFTGRDQM---QALTGWFAG--QFGTPNYAAHG 126 (679)
T ss_pred ceEEeCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCccH---HHHHHHHHH--hcCCCCcCCCC
Confidence 355555 266 7899999999999999999766531 334333333 24444554444
No 130
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.52 E-value=78 Score=29.94 Aligned_cols=20 Identities=55% Similarity=0.700 Sum_probs=14.6
Q ss_pred eeeecCCCCc-------------hHHHHHhhhh
Q 023334 172 HIYTSGASGT-------------NAAVIRGALR 191 (283)
Q Consensus 172 hi~TSGA~GT-------------NAAvIRGaLr 191 (283)
-+||||.||. |++.+...+.
T Consensus 176 i~yTSGTTG~PKgv~~th~~~~~~~~~~~~~~~ 208 (534)
T COG0318 176 LLYTSGTTGLPKGVVLTHRNLLANAAGIAAALG 208 (534)
T ss_pred EEeCCCCCCCCCEeEEecHhHHHHHHHHHHHhc
Confidence 3579999995 4566767766
No 131
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=23.50 E-value=4.9e+02 Score=22.96 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=32.5
Q ss_pred cccccchhHHHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhh
Q 023334 147 GTRNMGFMHQELIEILSYALVITKNHIYTSGASGTNAAVIRGALRA 192 (283)
Q Consensus 147 GsRhvp~~hq~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrA 192 (283)
|+-. +-..+.++++.+|+-...|+|=|.-+-| |-..|.-|||.
T Consensus 21 G~~~--~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg-~E~~lG~al~~ 63 (275)
T PRK11565 21 GVWQ--ASNEEVITAIHKALEVGYRSIDTAAIYK-NEEGVGKALKE 63 (275)
T ss_pred ECcc--CCHHHHHHHHHHHHHhCCCEEEchhhhC-CHHHHHHHHHH
Confidence 5533 3357899999999999999999887666 45667667764
No 132
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=23.41 E-value=1.3e+02 Score=22.84 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=53.2
Q ss_pred HhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHHhhhhHHHH
Q 023334 167 VITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMDII 246 (283)
Q Consensus 167 vl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS~lCN~eII 246 (283)
-++|.+++--|+..+-+.-++..+++ . -.+|||=|.. +..++...+.+..- .+.+
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~-g-A~v~vis~~~---------~~~~~~i~~~~~~~--------------~~~l 58 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEA-G-AKVTVISPEI---------EFSEGLIQLIRREF--------------EEDL 58 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCC-T-BEEEEEESSE---------HHHHTSCEEEESS---------------GGGC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhC-C-CEEEEECCch---------hhhhhHHHHHhhhH--------------HHHH
Confidence 35677777788877778888888887 4 6899999987 22233344444331 1224
Q ss_pred hhhceeeEEEee-CchHHHHHHHHHHhccCeeEE
Q 023334 247 SHVQQVICFAFH-DSRLLMETCQEAKNLRKIVTL 279 (283)
Q Consensus 247 srcqQlICFAFH-DS~tLLetC~eAe~~~KiVTL 279 (283)
..++ +.|+=. |-++--+-++.|+..+++|-.
T Consensus 59 ~~~~--lV~~at~d~~~n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 59 DGAD--LVFAATDDPELNEAIYADARARGILVNV 90 (103)
T ss_dssp TTES--EEEE-SS-HHHHHHHHHHHHHTTSEEEE
T ss_pred hhhe--EEEecCCCHHHHHHHHHHHhhCCEEEEE
Confidence 4454 455555 555556678889999988753
No 133
>PRK03670 competence damage-inducible protein A; Provisional
Probab=23.30 E-value=87 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=24.5
Q ss_pred cchhHHHHHHHHHHHHHhhCCeeeecCCCCch
Q 023334 151 MGFMHQELIEILSYALVITKNHIYTSGASGTN 182 (283)
Q Consensus 151 vp~~hq~LIEllsyALvl~gNhi~TSGA~GTN 182 (283)
+|==...|.+.+..++.....-|+|||+.|..
T Consensus 42 V~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt 73 (252)
T PRK03670 42 VGDDVEEIKSVVLEILSRKPEVLVISGGLGPT 73 (252)
T ss_pred cCCCHHHHHHHHHHHhhCCCCEEEECCCccCC
Confidence 44446778888888776556899999999964
No 134
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=23.30 E-value=2.3e+02 Score=21.77 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=17.1
Q ss_pred CCeeeecCCCCchHHH----HHhhhhhcCCCceeEee
Q 023334 170 KNHIYTSGASGTNAAV----IRGALRAERPDLLTVIL 202 (283)
Q Consensus 170 gNhi~TSGA~GTNAAv----IRGaLrAe~P~lLTViL 202 (283)
+..++..|-+|.++.- ++..+...+|++++|.+
T Consensus 36 ~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~ 72 (177)
T cd01822 36 DVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILEL 72 (177)
T ss_pred CeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555665655554432 33444445676665543
No 135
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=22.92 E-value=2.3e+02 Score=21.24 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=16.8
Q ss_pred HHhcCCceEEEec-ccccchhHHHHHH
Q 023334 135 IQQQGPRAIGFFG-TRNMGFMHQELIE 160 (283)
Q Consensus 135 IQq~G~rrIa~lG-sRhvp~~hq~LIE 160 (283)
+-++|.|+|+|+| ..+....+..+--
T Consensus 4 L~~~G~r~i~~i~~~~~~~~~~~r~~g 30 (160)
T PF13377_consen 4 LIERGHRRIAFIGGPPNSSVSRERLEG 30 (160)
T ss_dssp HHHTT-SSEEEEESSTTSHHHHHHHHH
T ss_pred HHHCCCCeEEEEecCCCChhHHHHHHH
Confidence 4578999999999 4445555544433
No 136
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.87 E-value=4.9e+02 Score=24.82 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhcCCceEEEecccccchhH-----HHHHHHHHHHHHhhCC-ee--eecCCCCchHHHHHhhhhhcCCC-c
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTRNMGFMH-----QELIEILSYALVITKN-HI--YTSGASGTNAAVIRGALRAERPD-L 197 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsRhvp~~h-----q~LIEllsyALvl~gN-hi--~TSGA~GTNAAvIRGaLrAe~P~-l 197 (283)
+++.|+..+.+.|.|.|.|.|..=..+-+ ..|.+++..-.-..|. +| .+.-....+...|+ +|+. .|. .
T Consensus 157 ~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~-~l~~-~~~~~ 234 (418)
T PRK14336 157 EIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLID-AMAH-LPKVC 234 (418)
T ss_pred HHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHH-HHHh-cCccC
Confidence 49999999999999999988765322322 2467766544333443 33 23333444555554 3433 222 2
Q ss_pred eeEeec-ccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHHhhhhH---HHHhhhceeeEEEeeCchHHHHHHHHHHhc
Q 023334 198 LTVILP-QSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNM---DIISHVQQVICFAFHDSRLLMETCQEAKNL 273 (283)
Q Consensus 198 LTViLP-QSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS~lCN~---eIIsrcqQlICFAFHDS~tLLetC~eAe~~ 273 (283)
-.+.|| ||.+ ++|+..+-++.+ .-...+|-..+.. +|.=+++=++.|-=-.-+...++.+..++.
T Consensus 235 ~~l~lglQSgs----------d~vLk~M~R~~~-~~~~~~~i~~lr~~~pgi~i~~d~IvGfPGET~edf~~tl~fi~~~ 303 (418)
T PRK14336 235 RSLSLPVQAGD----------DTILAAMRRGYT-NQQYRELVERLKTAMPDISLQTDLIVGFPSETEEQFNQSYKLMADI 303 (418)
T ss_pred CceecCCCcCC----------HHHHHHhCCCCC-HHHHHHHHHHHHhhCCCCEEEEEEEEECCCCCHHHHHHHHHHHHhc
Confidence 234343 4542 224444444432 1123333334433 343445666777777777888888887776
Q ss_pred c
Q 023334 274 R 274 (283)
Q Consensus 274 ~ 274 (283)
+
T Consensus 304 ~ 304 (418)
T PRK14336 304 G 304 (418)
T ss_pred C
Confidence 4
No 137
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=22.69 E-value=1.4e+02 Score=21.41 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=37.4
Q ss_pred HHHHHHHHHhcCCceEEEecc--------cccchhHHHHHHHHHH-HHHhhCCeeeecCCCCchHHH
Q 023334 128 YLQELLAIQQQGPRAIGFFGT--------RNMGFMHQELIEILSY-ALVITKNHIYTSGASGTNAAV 185 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGs--------Rhvp~~hq~LIEllsy-ALvl~gNhi~TSGA~GTNAAv 185 (283)
|..||.++++..+.++-++-+ -+.++++..++|-+.- .+...+.++|..|..+...+|
T Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~v~iCGp~~m~~~v 107 (109)
T PF00175_consen 41 FRDELEALAQEYPNRFHVVYVSSPDDGWDGFKGRVTDLLLEDLLPEKIDPDDTHVYICGPPPMMKAV 107 (109)
T ss_dssp THHHHHHHHHHSTTCEEEEEETTTTSSTTSEESSHHHHHHHHHHHHHHCTTTEEEEEEEEHHHHHHH
T ss_pred chhHHHHHHhhcccccccccccccccccCCceeehhHHHHHhhcccccCCCCCEEEEECCHHHHHHh
Confidence 778888888888765433311 1345667766553332 455678889999877766655
No 138
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=22.50 E-value=1.1e+02 Score=24.84 Aligned_cols=32 Identities=22% Similarity=0.082 Sum_probs=22.6
Q ss_pred chhHHHHHHHHHHHHHh-hCCeeeecCCCCchH
Q 023334 152 GFMHQELIEILSYALVI-TKNHIYTSGASGTNA 183 (283)
Q Consensus 152 p~~hq~LIEllsyALvl-~gNhi~TSGA~GTNA 183 (283)
+==...|.|.+..++.. .-..|+|||++|.-.
T Consensus 43 ~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~ 75 (152)
T cd00886 43 PDDKDEIREALIEWADEDGVDLILTTGGTGLAP 75 (152)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCC
Confidence 33346777888777542 467899999999753
No 139
>PRK12583 acyl-CoA synthetase; Provisional
Probab=22.29 E-value=90 Score=28.39 Aligned_cols=10 Identities=50% Similarity=0.717 Sum_probs=8.9
Q ss_pred eeeecCCCCc
Q 023334 172 HIYTSGASGT 181 (283)
Q Consensus 172 hi~TSGA~GT 181 (283)
-++|||.||+
T Consensus 206 i~~TSGsTG~ 215 (558)
T PRK12583 206 IQYTSGTTGF 215 (558)
T ss_pred EEECCCCCCC
Confidence 4899999997
No 140
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=22.16 E-value=53 Score=31.64 Aligned_cols=19 Identities=53% Similarity=0.788 Sum_probs=12.8
Q ss_pred eeecCC--CCchHHHHHhhhhh
Q 023334 173 IYTSGA--SGTNAAVIRGALRA 192 (283)
Q Consensus 173 i~TSGA--~GTNAAvIRGaLrA 192 (283)
|+|||+ -|.||| |||+.|.
T Consensus 7 IlTSGGdaPGmNa~-Iravvr~ 27 (347)
T COG0205 7 ILTSGGDAPGMNAV-IRAVVRT 27 (347)
T ss_pred EEccCCCCccHHHH-HHHHHHH
Confidence 689997 788873 4555443
No 141
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=22.04 E-value=28 Score=29.93 Aligned_cols=10 Identities=70% Similarity=1.401 Sum_probs=7.6
Q ss_pred EEEeeCchHH
Q 023334 254 CFAFHDSRLL 263 (283)
Q Consensus 254 CFAFHDS~tL 263 (283)
||+|||-.+|
T Consensus 114 c~ifHDVDll 123 (136)
T PF13733_consen 114 CFIFHDVDLL 123 (136)
T ss_dssp EEEEE-TTEE
T ss_pred EEEEeccccc
Confidence 9999997765
No 142
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=22.02 E-value=46 Score=30.38 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=10.0
Q ss_pred ceEEEe-cccccchhHHHHHHHHHHHH
Q 023334 141 RAIGFF-GTRNMGFMHQELIEILSYAL 166 (283)
Q Consensus 141 rrIa~l-GsRhvp~~hq~LIEllsyAL 166 (283)
|||||+ +..-+|-++--+-.+..||+
T Consensus 1 KrI~Il~sGG~apG~Na~i~~~v~~a~ 27 (282)
T PF00365_consen 1 KRIAILTSGGDAPGMNAAIRGVVRYAI 27 (282)
T ss_dssp EEEEEEEESS--TTHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCchhhhHHHHHHHHHHH
Confidence 344433 33334444444444444443
No 143
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=21.99 E-value=3.2e+02 Score=24.95 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhCCeeeecCCCCchHHHHHhhhhhcCCCceeEeecccc
Q 023334 156 QELIEILSYALVITKNHIYTSGASGTNAAVIRGALRAERPDLLTVILPQSL 206 (283)
Q Consensus 156 q~LIEllsyALvl~gNhi~TSGA~GTNAAvIRGaLrAe~P~lLTViLPQSL 206 (283)
..+..++..|....--.|+|+|+++-|.+.-=.+.-+..==..+|++|...
T Consensus 52 R~~~~~l~~a~~~G~~~vvs~ggs~gN~g~alA~~a~~~Gl~~~iv~~~~~ 102 (337)
T TIGR01274 52 RKLEYLIPDAQAQGCTTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWV 102 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcchHHHHHHHHHHHcCCcEEEEeccCC
Confidence 356677777777666777888766656443333333323333567777654
No 144
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=21.73 E-value=1.3e+02 Score=25.86 Aligned_cols=21 Identities=10% Similarity=-0.024 Sum_probs=11.5
Q ss_pred hCCeeeecCCCCchHHHHHhh
Q 023334 169 TKNHIYTSGASGTNAAVIRGA 189 (283)
Q Consensus 169 ~gNhi~TSGA~GTNAAvIRGa 189 (283)
++.++|.+|..+...++.+-.
T Consensus 189 ~~~~vyicGp~~mv~~~~~~L 209 (253)
T cd06221 189 DNTVAIVCGPPIMMRFVAKEL 209 (253)
T ss_pred CCcEEEEECCHHHHHHHHHHH
Confidence 455566666666555544433
No 145
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=21.71 E-value=53 Score=23.05 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=19.3
Q ss_pred HHHHHhhHhcCCCCCCCChHHHHhhhh--HHHHhhhc
Q 023334 216 LLAKVKTVIEKPHNDHLPLIEASRLCN--MDIISHVQ 250 (283)
Q Consensus 216 lLe~V~hlVE~PeND~LpL~eAS~lCN--~eIIsrcq 250 (283)
.++++..+|++=+|+++||+++-.+=- .+++.+|+
T Consensus 4 ~~~~Le~Iv~~Le~~~~sLdes~~lyeeg~~l~~~c~ 40 (53)
T PF02609_consen 4 AMERLEEIVEKLESGELSLDESLKLYEEGMELIKKCQ 40 (53)
T ss_dssp HHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455555555678999999876643 23444444
No 146
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=21.68 E-value=4.8e+02 Score=24.08 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=24.3
Q ss_pred HhhhceeeEEEee-CchHHHHHHHHHHhccCeeE
Q 023334 246 ISHVQQVICFAFH-DSRLLMETCQEAKNLRKIVT 278 (283)
Q Consensus 246 IsrcqQlICFAFH-DS~tLLetC~eAe~~~KiVT 278 (283)
++.=|-+|+++.- .+..+++..+.|++.+-.+.
T Consensus 125 l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I 158 (296)
T PRK12570 125 LTADDVVVGIAASGRTPYVIGALEYAKQIGATTI 158 (296)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEE
Confidence 3455778887765 45679999999999885443
No 147
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=21.67 E-value=35 Score=29.57 Aligned_cols=89 Identities=16% Similarity=0.249 Sum_probs=47.5
Q ss_pred hhhhcccceeeecccccCCChhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeec----CCCCc
Q 023334 106 QSVVEGSGAVMVSEFKPVPDVDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS----GASGT 181 (283)
Q Consensus 106 ~~vv~g~~~v~~~~~~~~p~vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TS----GA~GT 181 (283)
+.+++|-.- ..++.+++. .|+..+.-.++|-|=|+|-.+..-++.+. +.-.-..|+-. |++-+
T Consensus 60 ~~i~kgy~~--G~~~V~~~~----~e~~~~~~~~~~~l~ilgF~~~~~i~~~~-------~~~~s~~l~P~~~~~~s~~a 126 (272)
T cd00594 60 EDIVKGYEY--GGDYVPLTE----EELEQLKLETSKGLDILGFVPASEIPPYY-------FDKESYYLVPDDSDKGSEKA 126 (272)
T ss_pred HHhhhheee--CCeEEecCH----HHHHHhhcCCCCeEEEEeEechHhCCcce-------ecCCcEEEEcCCCCcccHHH
Confidence 455655432 255666555 45666677888888888866654333221 11111222221 11111
Q ss_pred h------------HHHHHhhhhhcCCCceeEeeccccc
Q 023334 182 N------------AAVIRGALRAERPDLLTVILPQSLK 207 (283)
Q Consensus 182 N------------AAvIRGaLrAe~P~lLTViLPQSL~ 207 (283)
= +|+.|.++|...+..|-+++|+--+
T Consensus 127 f~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~~~~ 164 (272)
T cd00594 127 FSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQEEE 164 (272)
T ss_pred HHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEeccccC
Confidence 1 1445566666668888899998633
No 148
>KOG2174 consensus Leptin receptor gene-related protein [Signal transduction mechanisms]
Probab=21.54 E-value=51 Score=28.66 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCCceEEEecccccc--hhHHHHHHHHHHHHHhhCCeeee
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMG--FMHQELIEILSYALVITKNHIYT 175 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp--~~hq~LIEllsyALvl~gNhi~T 175 (283)
-.+|||.-=-.|. . .|+=-.| +.|-++||-.|-+|+++||.|+=
T Consensus 65 ~~idlA~FlTg~~-v---vs~falPiVl~ha~lI~~gAc~l~~tg~~iIF 110 (131)
T KOG2174|consen 65 ACIDLAKFLTGAI-V---VSAFALPIVLAHAGLIGWGACALVLTGNSIIF 110 (131)
T ss_pred HHHHHHHHHhcch-h---hhhhhhHHHHHHhhHhhhhhhhhhhcCCchhH
Confidence 5566665543332 2 2333344 46999999999999999988763
No 149
>cd00368 Molybdopterin-Binding Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and tungsten-containing enzymes, including formate dehydrogenase-H (Fdh-H) and -N (Fdh-N), several forms of nitrate reductase (Nap, Nas, NarG), dimethylsulfoxide reductase (DMSOR), thiosulfate reductase, formylmethanofuran dehydrogenase, and arsenite oxidase. Molybdenum is present in most of these enzymes in the form of molybdopterin, a modified pterin ring with a dithiolene side chain, which is responsible for ligating the Mo. In many bacterial and archaeal species, molybdopterin is in the form of a dinucleotide, with two molybdopterin dinucleotide units per molybdenum. These proteins can function as monomers, heterodimers, or heterotrimers, depending on the protein and organism. Also included in the MopB superfamily is
Probab=21.20 E-value=2.8e+02 Score=24.26 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=32.3
Q ss_pred ccccCCC---hh-HHHHHHHHHh-cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecCC
Q 023334 119 EFKPVPD---VD-YLQELLAIQQ-QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSGA 178 (283)
Q Consensus 119 ~~~~~p~---vD-~lqELaaIQq-~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSGA 178 (283)
+++++.- +| +++.|..+.+ .|++.|+++++......-..++.- .+..+.++.+.+.+.
T Consensus 67 ~~~~isWdeAl~~ia~~l~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~ 129 (374)
T cd00368 67 KFVPISWDEALDEIAEKLKEIREKYGPDAIAFYGGGGASNEEAYLLQK--LLRALGSNNVDSHAR 129 (374)
T ss_pred CeEEecHHHHHHHHHHHHHHHHHHhCCceEEEEecCCCCcHHHHHHHH--HHHhcCCCccCCCCc
Confidence 4555442 44 5566666654 589999988776654433333222 123455666665544
No 150
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=21.04 E-value=1.1e+02 Score=27.47 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=17.5
Q ss_pred HhcCCCC---CCCC----hHHHHhhhhHH-HHhhhceee
Q 023334 223 VIEKPHN---DHLP----LIEASRLCNMD-IISHVQQVI 253 (283)
Q Consensus 223 lVE~PeN---D~Lp----L~eAS~lCN~e-IIsrcqQlI 253 (283)
+||-+.| ..+| +.+-.++|.+. ++=-+|-+.
T Consensus 188 iiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~ 226 (398)
T PRK03244 188 FLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQ 226 (398)
T ss_pred EEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc
Confidence 4554544 3466 77888888753 443444443
No 151
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=20.90 E-value=1.5e+02 Score=25.50 Aligned_cols=19 Identities=0% Similarity=-0.130 Sum_probs=11.1
Q ss_pred cCCCCCCCChHHHHhhhhH
Q 023334 225 EKPHNDHLPLIEASRLCNM 243 (283)
Q Consensus 225 E~PeND~LpL~eAS~lCN~ 243 (283)
.++...-.|+.+-..+|..
T Consensus 113 ~~~~G~~~~~~~i~~l~~~ 131 (352)
T cd00616 113 VHLYGNPADMDAIMAIAKR 131 (352)
T ss_pred ECCCCCcCCHHHHHHHHHH
Confidence 4454555566666666654
No 152
>PRK07777 aminotransferase; Validated
Probab=20.88 E-value=69 Score=28.60 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=7.9
Q ss_pred HHHHHHHHHhhCCeeeec
Q 023334 159 IEILSYALVITKNHIYTS 176 (283)
Q Consensus 159 IEllsyALvl~gNhi~TS 176 (283)
++++.+++.-.|.+|++.
T Consensus 98 l~~~~~~~~~~gd~vli~ 115 (387)
T PRK07777 98 IAAAVLGLVEPGDEVLLI 115 (387)
T ss_pred HHHHHHHhcCCCCEEEEe
Confidence 344444444444444443
No 153
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=20.86 E-value=63 Score=26.14 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=21.9
Q ss_pred CCCchHHHHHhhhhhcCCCceeEeecccccC
Q 023334 178 ASGTNAAVIRGALRAERPDLLTVILPQSLKK 208 (283)
Q Consensus 178 A~GTNAAvIRGaLrAe~P~lLTViLPQSL~k 208 (283)
..|+-..|=...+-.++|..|.++||++|+.
T Consensus 46 ~~g~~~~v~~~~i~~N~ps~l~~~lPa~L~~ 76 (102)
T PF14734_consen 46 DEGTETKVPCSSIVRNKPSRLIFILPADLAA 76 (102)
T ss_pred CCCceEEecHHHeEeCCCcEEEEECcCccCc
Confidence 3343334444556667999999999998864
No 154
>PLN02587 L-galactose dehydrogenase
Probab=20.78 E-value=6e+02 Score=22.58 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHhhCCeeeecCCC--CchHHHHHhhhhh
Q 023334 154 MHQELIEILSYALVITKNHIYTSGAS--GTNAAVIRGALRA 192 (283)
Q Consensus 154 ~hq~LIEllsyALvl~gNhi~TSGA~--GTNAAvIRGaLrA 192 (283)
-..+.++++.+|+-...|++=|+-.- |.+-..|.-+|+.
T Consensus 29 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~ 69 (314)
T PLN02587 29 SEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKA 69 (314)
T ss_pred CHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHh
Confidence 45789999999999999999998775 4466777777765
No 155
>cd06152 YjgF_YER057c_UK114_like_4 YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.74 E-value=53 Score=25.94 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=12.2
Q ss_pred hhCCeeeecCCCCch
Q 023334 168 ITKNHIYTSGASGTN 182 (283)
Q Consensus 168 l~gNhi~TSGA~GTN 182 (283)
..|+.||+||-.|.+
T Consensus 8 ~~g~~v~~SGq~g~d 22 (114)
T cd06152 8 RIGDRIEISGQGGWD 22 (114)
T ss_pred EECCEEEEeccCCcC
Confidence 358999999987764
No 156
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.56 E-value=94 Score=25.73 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCCceEEEecccccchhHHHHHHHH
Q 023334 126 VDYLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEIL 162 (283)
Q Consensus 126 vD~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEll 162 (283)
.|+++=|.... +..++||++|.+|+-.--..+-+++
T Consensus 64 ~Dil~al~~a~-~~~~~Iavv~~~~~~~~~~~~~~ll 99 (176)
T PF06506_consen 64 FDILRALAKAK-KYGPKIAVVGYPNIIPGLESIEELL 99 (176)
T ss_dssp HHHHHHHHHCC-CCTSEEEEEEESS-SCCHHHHHHHH
T ss_pred hHHHHHHHHHH-hcCCcEEEEecccccHHHHHHHHHh
Confidence 58888887777 4558999999999876555555554
No 157
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=20.47 E-value=2.5e+02 Score=26.13 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHhc-------CCceEEEecccccchhHHHHHHHHHHHHHhhCCeeee
Q 023334 123 VPDVDYLQELLAIQQQ-------GPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYT 175 (283)
Q Consensus 123 ~p~vD~lqELaaIQq~-------G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~T 175 (283)
+=++|.-+|+..++.. ..+.|+|.|..+.|=+ .|||=+-..|...|-++.+
T Consensus 181 ~~nINTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKt--t~~~~l~~~l~~~g~~v~~ 238 (366)
T PRK14489 181 FFNVNTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKT--TLLEKLIPELIARGYRIGL 238 (366)
T ss_pred cccCCCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHH--HHHHHHHHHHHHcCCEEEE
Confidence 3357788888888776 5789999999999977 4677777777776655543
No 158
>PF13884 Peptidase_S74: Chaperone of endosialidase; PDB: 3GUD_A.
Probab=20.41 E-value=58 Score=22.55 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=10.7
Q ss_pred ecccccchhHHHHHHHH
Q 023334 146 FGTRNMGFMHQELIEIL 162 (283)
Q Consensus 146 lGsRhvp~~hq~LIEll 162 (283)
-+.+|+||+.|++.|++
T Consensus 40 ~~~~~~G~IAQev~~v~ 56 (58)
T PF13884_consen 40 EDRRHIGFIAQEVQEVF 56 (58)
T ss_dssp GS--EEE--HHHHHHHH
T ss_pred CCceEEEEeHHHHHHhC
Confidence 35589999999999875
No 159
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=20.40 E-value=5.5e+02 Score=22.09 Aligned_cols=63 Identities=22% Similarity=0.184 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc---ccchhHHHHHHHHHH--HHHhhCCeeeecCCC-CchHHHHHhhh
Q 023334 128 YLQELLAIQQQGPR-AIGFFGTR---NMGFMHQELIEILSY--ALVITKNHIYTSGAS-GTNAAVIRGAL 190 (283)
Q Consensus 128 ~lqELaaIQq~G~r-rIa~lGsR---hvp~~hq~LIEllsy--ALvl~gNhi~TSGA~-GTNAAvIRGaL 190 (283)
|..||.+++..++. ++-+.=|| ..++++..|.|.+.- .+...+-++|+.|.. |.-.+|.+...
T Consensus 154 ~~~el~~~~~~~~~~~~~~~~s~~~~~~~~v~~~l~~~~~~~~~~~~~~~~vy~CGp~~~m~~~v~~~l~ 223 (245)
T cd06200 154 CREELEAWQAAGHLARLDLAFSRDQAQKRYVQDRLRAAADELRAWVAEGAAIYVCGSLQGMAPGVDAVLD 223 (245)
T ss_pred HHHHHHHHHHCCCcceEEEEEccCCCCCcchHHHHHHhHHHHHHHHHCCcEEEEECCchhhhHHHHHHHH
Confidence 66777777766553 12121122 245565544443321 011234578888887 77777766543
No 160
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=20.27 E-value=93 Score=27.18 Aligned_cols=45 Identities=13% Similarity=0.065 Sum_probs=24.7
Q ss_pred HHHHHHHHHhcCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeecC
Q 023334 128 YLQELLAIQQQGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTSG 177 (283)
Q Consensus 128 ~lqELaaIQq~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TSG 177 (283)
+-++++..-...+..|.+.|+ --++++.++..++...|.+|+++-
T Consensus 74 lr~~ia~~~~~~~~~i~~~~~-----Ga~~~i~~~~~~~~~~gd~vlv~~ 118 (361)
T PRK00950 74 LREALSKYTGVPVENIIVGGD-----GMDEVIDTLMRTFIDPGDEVIIPT 118 (361)
T ss_pred HHHHHHHHhCCCHHHEEEeCC-----CHHHHHHHHHHHhcCCCCEEEEcC
Confidence 555555554333445554332 125666777666666676676554
No 161
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=20.25 E-value=7.2e+02 Score=23.35 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhcCCceEEEecccccch----h-HHHHHHHHHHHHHhhCC-ee--eecCCCCchHHHHHhhhhhcCC-Cc
Q 023334 127 DYLQELLAIQQQGPRAIGFFGTRNMGF----M-HQELIEILSYALVITKN-HI--YTSGASGTNAAVIRGALRAERP-DL 197 (283)
Q Consensus 127 D~lqELaaIQq~G~rrIa~lGsRhvp~----~-hq~LIEllsyALvl~gN-hi--~TSGA~GTNAAvIRGaLrAe~P-~l 197 (283)
++++|+..+.+.|.|.|-|.|.-=..+ - ...+.|+|..-..+.|. .+ .+.-....+--.|+ +|+. -+ -.
T Consensus 172 ~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~-~m~~-~~~~~ 249 (429)
T TIGR00089 172 DILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIE-LIAE-NPKVC 249 (429)
T ss_pred HHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHH-HHHh-CCCcc
Confidence 499999999999999999887321111 0 13477777543333332 22 22233445555554 3333 23 23
Q ss_pred eeEee-cccccCCChhHHHHHHHHhhHhcCCCCCCCChHHHHhhhhHH---HHhhhceeeEEEeeCchHHHHHHHHHHhc
Q 023334 198 LTVIL-PQSLKKQPPESQELLAKVKTVIEKPHNDHLPLIEASRLCNMD---IISHVQQVICFAFHDSRLLMETCQEAKNL 273 (283)
Q Consensus 198 LTViL-PQSL~kQp~ESqelLe~V~hlVE~PeND~LpL~eAS~lCN~e---IIsrcqQlICFAFHDS~tLLetC~eAe~~ 273 (283)
-.|-+ .||.+. +|+..+-++. +.--..++-+.+... |.-.++=++.|---+-+.+.+|.+.++++
T Consensus 250 ~~l~igiES~s~----------~vLk~m~R~~-~~~~~~~~i~~lr~~~~~i~i~~~~IvG~PgET~ed~~~tl~~i~~~ 318 (429)
T TIGR00089 250 KHLHLPVQSGSD----------RILKRMNRKY-TREEYLDIVEKIRAKIPDAAITTDIIVGFPGETEEDFEETLDLVEEV 318 (429)
T ss_pred CceeeccccCCh----------HHHHhCCCCC-CHHHHHHHHHHHHHHCCCCEEEeeEEEECCCCCHHHHHHHHHHHHhc
Confidence 34545 566653 2334444442 222233444444443 33355666777778888999999999988
Q ss_pred c
Q 023334 274 R 274 (283)
Q Consensus 274 ~ 274 (283)
+
T Consensus 319 ~ 319 (429)
T TIGR00089 319 K 319 (429)
T ss_pred C
Confidence 7
No 162
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=20.17 E-value=3.7e+02 Score=24.18 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=43.1
Q ss_pred cCCceEEEecccccchhHHHHHHHHHHHHHhhCCeeeec---CCCCchHHHHHhhhhhcCCCceeEeecccccCCChhHH
Q 023334 138 QGPRAIGFFGTRNMGFMHQELIEILSYALVITKNHIYTS---GASGTNAAVIRGALRAERPDLLTVILPQSLKKQPPESQ 214 (283)
Q Consensus 138 ~G~rrIa~lGsRhvp~~hq~LIEllsyALvl~gNhi~TS---GA~GTNAAvIRGaLrAe~P~lLTViLPQSL~kQp~ESq 214 (283)
-.+++|-|.|||.. .+.+|+-.|.. +|-+-++. |++=||.-. +.- -.|+++-|+
T Consensus 65 ~~~~~ILfVgTk~~---~~~~v~k~A~~---~g~~~v~~RWlgG~LTN~~~-~~~---~~Pdliiv~------------- 121 (204)
T PRK04020 65 YEPEKILVVSSRQY---GQKPVQKFAEV---VGAKAITGRFIPGTLTNPSL-KGY---IEPDVVVVT------------- 121 (204)
T ss_pred hcCCeEEEEeCCHH---HHHHHHHHHHH---hCCeeecCccCCCcCcCcch-hcc---CCCCEEEEE-------------
Confidence 35789999999983 45666544433 24444444 888899863 111 156665544
Q ss_pred HHHHHHhhHhcCCCCCCCChHHHHhh
Q 023334 215 ELLAKVKTVIEKPHNDHLPLIEASRL 240 (283)
Q Consensus 215 elLe~V~hlVE~PeND~LpL~eAS~l 240 (283)
.|.+|+..+.||+++
T Consensus 122 -----------dp~~~~~AI~EA~kl 136 (204)
T PRK04020 122 -----------DPRGDAQAVKEAIEV 136 (204)
T ss_pred -----------CCcccHHHHHHHHHh
Confidence 566777777788765
No 163
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=20.15 E-value=4.5e+02 Score=23.45 Aligned_cols=63 Identities=16% Similarity=0.118 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCc-eEEEeccc--ccchhHHHHHHHHH--HHHHhhCCeeeecCCCCchHHHHHhhh
Q 023334 128 YLQELLAIQQQGPR-AIGFFGTR--NMGFMHQELIEILS--YALVITKNHIYTSGASGTNAAVIRGAL 190 (283)
Q Consensus 128 ~lqELaaIQq~G~r-rIa~lGsR--hvp~~hq~LIElls--yALvl~gNhi~TSGA~GTNAAvIRGaL 190 (283)
|..||..+++.++. ++-+.-|| ..+++...+.+... ....-.+-.+|..|..+...+|.+...
T Consensus 198 ~~~eL~~l~~~~~~~~~~~~~s~~~~~g~v~~~l~~~~~~l~~~~~~~~~vyiCGp~~M~~~v~~~L~ 265 (289)
T cd06201 198 YEDELDQYLADGRLTQLHTAFSRTPDGAYVQDRLRADAERLRRLIEDGAQIMVCGSRAMAQGVAAVLE 265 (289)
T ss_pred HHHHHHHHHHcCCCceEEEEECCCCCcccchhHHHHhHHHHHHHHHCCcEEEEECCHHHHHHHHHHHH
Confidence 67888888887763 33333455 34566444333221 112235668999999888777665543
Done!