BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023335
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + G + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 66 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 122
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 123 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 20 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 80 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 136
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 137 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 174
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVG 155
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
G R P+ + + A + ++D+T T +++ W E R+ +I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLI 136
+GL +S + +G DS +KI L+GD +GK+ V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 196
KT+ + G ++ +WD G R + A+ I+ ++D+T T +I W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 197 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255
+ N A +L+G K D R+ A Q A AK + SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 256 FKFIMAKL 263
F F +AKL
Sbjct: 173 F-FTLAKL 179
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ IWD G
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A+ I+ ++D+T T +I W+ + N A +L+G K D R
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 124 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ IWD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
+ A I+ ++D+T T +I W+ + N A +L+G K D R+
Sbjct: 65 FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 81/163 (49%), Gaps = 6/163 (3%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWD 153
S L LK+ LLGD +GK+S + ++V + + ++ G + + KT+ Q F IWD
Sbjct: 2 SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
G R P+ + + A + ++D+T T +++ W E R+ +I + I
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
D D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 122 DLT----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ +WD G
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A+ I+ ++D+T T +I W+ + N A +L+G K D R
Sbjct: 68 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 128 V------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 166
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 102 KISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK+ V++V ++ S + G++ KT+ + G ++ +WD G R
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRL 218
+ A I+ ++D+T T +I W+ + N A +L+G K D R+
Sbjct: 65 FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
A Q A AK + SSA ++ NVN+IF F +AKL
Sbjct: 125 ------VTADQGEALAKELGIPFIESSAKNDDNVNEIF-FTLAKL 162
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 67
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
D D + A A+ YA+ + LFF +SA NV +IF I +L
Sbjct: 128 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 8/188 (4%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 205
I +WD G R +P +D+ A + ++D+T+ + W + R + I
Sbjct: 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 121
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 122 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176
Query: 266 LPWTVKRN 273
+ T R+
Sbjct: 177 MESTQDRS 184
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 126 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 1 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ T W E ++ I I L G K D
Sbjct: 61 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 121 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ ++GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIW 152
+ K+ LLG+ +GK+S V ++V + QE ++Q A + +T+ + + F IW
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAA---FLTQTVCLDDTTVKFEIW 59
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTK 211
D G R P+ + A A + ++D+T+ T W E ++ I I L G K
Sbjct: 60 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 119
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
D + + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 120 ADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGAR 146
S Y D DL+ KI L+GD +GK++ + ++ NE S G+ +TL ++G R
Sbjct: 3 SEDYGYDYDLL-FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR 61
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 206
I IWD G R + AV L ++D++ + + W SE R+ + +
Sbjct: 62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAV 121
Query: 207 -LIGTKFD-DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
LIG K D +R P +++ +A+ + +SA ++ NV+K F+ ++ ++
Sbjct: 122 GLIGNKSDLAHLRAVP------TEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 88/188 (46%), Gaps = 8/188 (4%)
Query: 89 SSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGAR 146
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 5 STGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT 64
Query: 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIP 205
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 65 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVII 124
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 125 MLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179
Query: 266 LPWTVKRN 273
+ T R+
Sbjct: 180 MESTQDRS 187
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 101 LKISLLGDCQIGKTSFVKY--VGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT V+ G ER G++ KTL +QG R+ IWD G
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFD 213
R + A + +D+T R + S+ W + RK+ + +LIG K D
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSD 145
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 65 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ I +WD
Sbjct: 2 SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
G R +P +D+ A + ++D+T+ + W + R + I +L+G K
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 122 D----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 167
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ T W E ++ I I L G K D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ + Q +A+AYA +SA +NVN+IF I KL
Sbjct: 123 ASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV F+ I+ +++ +
Sbjct: 141 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 184
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 4 ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 124 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S + LK+ LLGD +GK+S V ++V + + ++ G + + KT+ F IWD
Sbjct: 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
G R P+ + + A + ++D+T + + ++ W E ++ I + I
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
D D++ A+ YA+++ A + +SA + IN+ ++F+ I
Sbjct: 139 DL----SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 3 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P+ + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 63 GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 123 ANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI ++G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 217
R + A+ + M+D+T+ + N++ W ++ + ++ A +L+G K D
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 121
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
D + + + R A + F +SA NINV + F+
Sbjct: 122 -MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 4/119 (3%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKTLMVQGARIAFSIWDVG 155
V+ K+ L+GD +GKT + + + + G++ NK L V G ++ +WD
Sbjct: 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA 68
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
G R +DA A+L ++D+T++ + ++I W +E ++ Q + + L+G K D
Sbjct: 69 GQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD 127
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 77/161 (47%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 216
R + A+ L M+D+ ++ + ++ W ++ + ++ A IL+G K D +
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
R+ P A R A + F +SA NINV ++F+
Sbjct: 143 RVVP------AEDGRRLADDLGFEFFEASAKENINVKQVFE 177
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 7/161 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ ++GD +GK+S + ++ N S + G++ +T+ + G ++ IWD G
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218
R + ++ ++D+TS + ++ W E + IL+G K DD
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDD---- 125
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
P+ + A +A M LF +SA N+NV ++F I
Sbjct: 126 -PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI 165
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 8/169 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ LLG+ +GK+S V ++V G E G + +T+ + + F IWD
Sbjct: 5 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P + A A + ++D+T+ + W E ++ I I L G K D
Sbjct: 65 GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ D Q +A++YA +SA + NVN+IF I KL
Sbjct: 125 ANKRAVDFQ-----EAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 84/180 (46%), Gaps = 9/180 (5%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQG 144
T SSG D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 2 TMSSG-DFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED 60
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTA 203
+ +WD G R +P +D+ + ++D+T+ + + W + R +
Sbjct: 61 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDV 120
Query: 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I +L+G K D D + + AK + +SA NV ++F+ + A L
Sbjct: 121 IIMLVGNKTD-----LSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
S + K+ LLG+ +GK+S V ++V G E G + +++ + + F IWD
Sbjct: 4 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWD 63
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 212
G R P+ + A A + ++D+T++ T W E ++ +I I L G K
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKA 123
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKR 272
D + + + +A+AYA +SA +NVN +F I K LP + +
Sbjct: 124 DLANKRMVEYE-----EAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKK---LPKSEPQ 175
Query: 273 NL 274
NL
Sbjct: 176 NL 177
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 9 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 69 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV F+ I+ +++ +
Sbjct: 129 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI 172
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 150 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 132 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 173
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+P D +ARA+A+ + +SA + NV F+ I+ +++
Sbjct: 126 RAVPTD-------EARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 167
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 198
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 199 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 254
+ + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 255 IFKFIMAKL 263
+ IM ++
Sbjct: 179 LLDLIMKRM 187
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDD 214
G R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD- 122
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNL 274
L Q +I R AK + +SA NV ++F+ + A L + T R+
Sbjct: 123 ---LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRSR 178
Query: 275 TIGEPIID 282
E +ID
Sbjct: 179 ---EDMID 183
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 24/189 (12%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--- 145
D D D + +K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 5 DGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGA 63
Query: 146 -----RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARK 198
++ +WD G R +DA+ L MFDLTS+ + ++ W S +A
Sbjct: 64 SGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA 123
Query: 199 WNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK---- 254
+ + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 124 YCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVET 178
Query: 255 IFKFIMAKL 263
+ IM ++
Sbjct: 179 LLDLIMKRM 187
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 217
R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTD---- 117
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 118 LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 78/168 (46%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++ + +WD G
Sbjct: 3 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKFDDFVR 217
R +P +D+ + ++D+T+ + W + R + I +L+G K D
Sbjct: 63 RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTD---- 118
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
L Q TI + AK + +SA NV ++F+ + + L
Sbjct: 119 LADKRQITIE-EGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ S+K+ LLG+ +GK+S V ++V N+ E G + + + + + F IWD
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDD 214
G R P ++A A L ++D+T + W E + I I L+G K D
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID- 119
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAKL 263
L + +A + K LFF +SA NVN +F I K+
Sbjct: 120 --XLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 23/181 (12%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA--------RIA 148
+K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QG ++
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--EARKWNQTAIPI 206
+WD G R +DA+ L MFDLTS+ + ++ W S +A + + +
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK----IFKFIMAK 262
LIG K D PD + QAR A F +SA NV K + IM +
Sbjct: 146 LIGNKAD-----LPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 200
Query: 263 L 263
+
Sbjct: 201 M 201
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI ++G+ +GKTSF+ +Y + + + G++ KT+ RI IWD G
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVR 217
R + A + +D+T+ + N++ W ++ + ++ A +L+G K D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
D + + + R A + F +SA NINV + F+
Sbjct: 125 -XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 195
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 196 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
A + + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 79/179 (44%), Gaps = 20/179 (11%)
Query: 91 GYDTDSDLVSL-KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLM--VQGA 145
G TD D L K+ LGD +GKT+F+ +Y N+ + + G++ K ++ QGA
Sbjct: 1 GSXTDGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGA 60
Query: 146 --------RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS--E 195
++ +WD G R +DA L FDLTS+ + ++ W S +
Sbjct: 61 DGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQ 120
Query: 196 ARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254
A + + +LIG K D PD + QAR A+ F +SA NV K
Sbjct: 121 ANAYCENPDIVLIGNKAD-----LPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ ++G+ +GKTSF+ +Y + + + G++ KT+ R+ IWD G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFD-DFV 216
R + A+ + M+D+T+ + N++ W ++ + ++ A IL+G K D +
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
R+ P + + A+ + F +SA NI+V + F+
Sbjct: 144 RVVP------TEKGQLLAEQLGFDFFEASAKENISVRQAFE 178
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 9/176 (5%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIA 148
G D D + KI L+G+ +GKT V+ Q A G++ + KT+ + G ++
Sbjct: 18 GSMEDYDFL-FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK 76
Query: 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPIL 207
IWD G R + A A++ +D+T + + W E ++ + I +L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 208 IGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+G K D R Q +A +++A +SA + NV K+F + +L
Sbjct: 137 VGNKIDLAERREVSQQ-----RAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
L++ ++G +GKTS ++ ++ E G++ KT+ ++G +I IWD G
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A I+ ++D+T + T + + W K+ ++ A +L+G K D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLD---- 142
Query: 218 LPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIF 256
D + T Q +A+ + F +SA N NV++IF
Sbjct: 143 CETDREIT-RQQGEKFAQQITGMRFCEASAKDNFNVDEIF 181
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 134 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ LG+ +GKTS + ++ + + + Q G++ ++KTL + + +WD G R
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA-RKWNQTAIPILIGTKFDDFVRL 218
+P +D+ A + ++D+T+R + + W + + + I L+G K D
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTD----- 117
Query: 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
DL+ + A+ +SA N+ +FK +KL
Sbjct: 118 LGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 11/171 (6%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARI-AFSIWDVGGD 157
KI L+GD +GK++ + ++ +E S G+ K++ ++ +I IWD G
Sbjct: 8 FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFD-DF 215
R + AV L ++D+T + + +I W E R + I IL +G K D
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+R+ D A YAK K +SA NV F ++ +++N+
Sbjct: 128 LRVIND------NDATQYAKKEKLAFIETSALEATNVELAFHQLLNEIYNV 172
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 73
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 74 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 134 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 216
R + AV L +FDLT T + W E + T + +L+G K D
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
R P +AR +A+ +SA + NV F+ ++ ++F
Sbjct: 146 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 61
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 62 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 121
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 122 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 165
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++G GK+ + +++ N+ ++ S G+ ++ + V G + IWD G
Sbjct: 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+TSR T NS+ W ++AR + + IL G K D
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKD---- 141
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L P+ + T +R +A+ + +SA NV + F
Sbjct: 142 LDPEREVTFLEASR-FAQENELMFLETSALTGENVEEAF 179
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GKT+ + ++ NE S G+ +T+M+ A + IWD G
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD-DFV 216
R + AV L +FDLT T + W E + T + +L+G K D
Sbjct: 71 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
R P +AR +A+ +SA + NV F+ ++ ++F
Sbjct: 131 REVP------TEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 172
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
K D L T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
+ KI L GD +GK+SF+ + NE +E G++ KTL+V G R +WD G
Sbjct: 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 213
R + A +L ++D+T + +I W +PI L+G K D
Sbjct: 88 ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKAD 144
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
L D + T +R +A+ + +SA NV + F K+ N
Sbjct: 127 LDADREVTFLEASR-FAQENELMFLETSALTGENVEEAFVQCARKILN 173
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 73/175 (41%), Gaps = 9/175 (5%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIW 152
+ ++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +W
Sbjct: 7 NGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVW 66
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212
D G + +A + MFD+TSR T ++ W+ + + + +L G K
Sbjct: 67 DTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 126
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
D R + + + + + SA N N K F ++ KL P
Sbjct: 127 DVKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 174
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
K D R T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KIDFENRQVA----TKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIA-FSIWDVGGD 157
LK+ +LGD +GKTS + +YV ++ + + G + + K + V G ++A +WD G
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 158 SRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGTK 211
R F + +A + A + ++D+T+ + +I W E A + P +++G K
Sbjct: 69 ER-FQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFI 259
D + A+ AK++ LF +SA + INV+ F+ I
Sbjct: 128 ID----AEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEI 172
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 14/169 (8%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 QER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259
K D L T QA Y+K F +SA INV + F+ I
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTI 169
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 64
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 65 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 124
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 125 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 168
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 70
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 71 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 130
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 131 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 189
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 70/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 70
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 71 LEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 130
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 131 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 174
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 14/190 (7%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGG 156
V LK+ +LGD +GKTS + N++ + A G + + K +MV + IWD G
Sbjct: 7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAG 66
Query: 157 DSRSFDHVPIA-CKDAVAILFMFDLTSRCTLNSIVGWYSE----ARKWNQTAIP-ILIGT 210
R F + +A + A + +FD+T+ T ++ W E A + P +++G
Sbjct: 67 LER-FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGN 125
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
K D L T QA Y+K F +SA INV + F+ I V
Sbjct: 126 KID----LENRQVATKRAQAWCYSKN-NIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 271 KRNLTIGEPI 280
+ EPI
Sbjct: 181 ELYNEFPEPI 190
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSG-SP 69
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 70 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 129
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 130 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 188
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 9/174 (5%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +WD
Sbjct: 1 GEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWD 60
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213
G + +A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 61 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 120
Query: 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + + + + + SA N N K F ++ KL P
Sbjct: 121 VKER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 167
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 102 KISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
K+ L+GD Q GKT+ ++ + + E + N L + R+ S+WD G S
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN-YTACLETEEQRVELSLWDTSG-SP 86
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD---- 213
+D+V P+ D+ A+L FD++ T++S + W +E + + +LIG K D
Sbjct: 87 YYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTD 146
Query: 214 --DFVRLPPDLQWTIA-TQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNLP 267
+ L Q I+ Q A AK + A ++ S+ T +++ IF+ N P
Sbjct: 147 LSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++GD +GK+ + ++ G+ + + V G +I IWD G
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+T R T N + W ++AR N + ILIG K D +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 133
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
D+ + +A+ +A+ +SA NV F K++
Sbjct: 134 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 9/173 (5%)
Query: 97 DLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDV 154
++ + K+ L+GD GKT+FVK G +++ + G+ + + I F +WD
Sbjct: 1 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214
G + +A + MFD+TSR T ++ W+ + + + +L G K D
Sbjct: 61 AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + + + + + SA N N K F ++ KL P
Sbjct: 121 KER-------KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNP 166
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++GD +GK+ + ++ G+ + + V G +I IWD G
Sbjct: 31 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+T R T N + W ++AR N + ILIG K D +
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD--LE 148
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
D+ + +A+ +A+ +SA NV F K++
Sbjct: 149 AQRDVTY---EEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 192
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 9/171 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V K+ L+GD GKT+FVK G +++ + G+ + I F++WD G
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG 68
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ A + FD+TSR T ++ W+ + + + +L G K D
Sbjct: 69 QEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 128
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267
R + ++ + + + SA N N K F ++ KL P
Sbjct: 129 R-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L +LKI ++G+ +GK+S + ++ + + L G++ KT+ V G + +IWD
Sbjct: 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 213
G R P + A ++ ++D+T R T + W +E + + L+G K D
Sbjct: 73 GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 12 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 72 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 127
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
L D + T +R +A+ + +SA +V + F K+ N
Sbjct: 128 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 174
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 22 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 80
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 81 -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 138
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGN---EQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
++ KI L+GD +GKT+++ V + E+ + + +N L QG I F++WD
Sbjct: 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTA 69
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI 208
G + + A + FD+TSR T ++ W E + PI++
Sbjct: 70 GQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 78/182 (42%), Gaps = 20/182 (10%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQ------- 143
D D D + +K LGD +GKTS + +Y G + + G++ K ++ +
Sbjct: 5 DGDYDYL-IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGA 63
Query: 144 ---GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 200
G RI +WD G R +DA+ L +FDLT+ + ++ W S+ +
Sbjct: 64 VGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA 123
Query: 201 QTAIP--ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258
+ P +L G K D D + +AR A+ F +SA + N++ +
Sbjct: 124 YSENPDIVLCGNKSD-----LEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEM 178
Query: 259 IM 260
++
Sbjct: 179 LL 180
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 85
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 86 -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 143
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V KI ++GD Q GKT+ + + E + N + + RI S+WD G
Sbjct: 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSG 64
Query: 157 DSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
S +D+V P++ D+ A+L FD++ TL+S++ W E +++ +L+G K D
Sbjct: 65 -SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSD 122
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFVK-YVGNEQERSLQMAGLNLINKTLMVQGARIA 148
+G + + S+K+ L+GD GKTS + + S L V+G +
Sbjct: 24 AGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVH 83
Query: 149 FSIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPI 206
IWD G +D + P+ DA +L FD+TS + ++I WY E + + I
Sbjct: 84 LHIWDTAGQD-DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPII 142
Query: 207 LIGTKFD 213
++G K D
Sbjct: 143 VVGCKTD 149
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++G+ GK+ + +++ + ++ S G+ +K + V G + IWD G
Sbjct: 9 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + A L ++D+TSR T N++ W ++AR +Q + IL G K D
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265
L D + T +R +A+ + +SA +V + F K+ N
Sbjct: 125 LDADREVTFLEASR-FAQENELMFLETSALTGEDVEEAFVQCARKILN 171
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
LK+ LLGD +GK+S + +YV N+ ++ G+ +N+ L V G + IWD G
Sbjct: 8 LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
R + A L F + R + ++ W E + P +++G K D
Sbjct: 68 RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 10/160 (6%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++GD +GK+ + +++ + + G+ + + + G +I IWD G
Sbjct: 11 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAG-Q 69
Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFV 216
SF + + + A L ++D+T R T N + W +AR+ N + +LIG K D
Sbjct: 70 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLES 129
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
R + + A+A+ +SA NV + F
Sbjct: 130 RREVKKE-----EGEAFAREHGLIFMETSAKTASNVEEAF 164
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQG-ARIAFSIW 152
S + LKI +LGD GKTS E ++ Q GL+ + + + G + IW
Sbjct: 2 SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA----IPILI 208
D+GG + + A +L ++D+T+ + ++ WY+ +K ++ + + L+
Sbjct: 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 209 GTKFD 213
G K D
Sbjct: 122 GNKID 126
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 139
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
+++ + A+ +A A K +SA + NV F
Sbjct: 140 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 10/160 (6%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K ++GD +GK+ + +++ + + G+ + + + G +I IWD G
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 159 RSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
SF + + + A L ++D+T R T N + W +AR+ + + + I LIG K D
Sbjct: 82 -SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
R + + A+A+ +SA NV + F
Sbjct: 141 RRDVKRE-----EGEAFAREHGLIFMETSAKTACNVEEAF 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
+++ + A+ +A A K +SA + NV F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+G+ +GK+ + ++ + + G++ KT+ + G + IWD G
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217
R + + I+ ++D+T + + N + W E ++ T + +L+G K D ++
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD--LK 126
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
+++ + A+ +A A K +SA + NV F
Sbjct: 127 DKRVVEYDV---AKEFADANKMPFLETSALDSTNVEDAF 162
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT + + S + G++ +T+ + G RI IWD G
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
R + A+ I+ ++D+T+ + ++I W + + +++G K D
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 122
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
D + + A +SA NINV F F +A+
Sbjct: 123 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 74/167 (44%), Gaps = 9/167 (5%)
Query: 99 VSLKISLLGDCQIGKTSFVKYV--GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
V++K+ ++G+ +GK+S ++ G + + G++ + + + V + +WD G
Sbjct: 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAG 63
Query: 157 DSRSFDHVPIAC-KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
FD + A + A A + +F T R + +I W + L+ K D
Sbjct: 64 -QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID-- 120
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
D +A AK +K + +S ++NV+++FK++ K
Sbjct: 121 ---LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 9/165 (5%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERS--LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GKT + + S + G++ +T+ + G RI IWD G
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVR 217
R + A+ I+ ++D+T+ + ++I W + + +++G K D
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCD---- 124
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262
D + + A +SA NINV F F +A+
Sbjct: 125 -VNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF-FTLAR 167
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 13 AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 71
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 128
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 22 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 80
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 137
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 120
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 7 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 65
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 122
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
R + + L F + + ++ W E + P +++G K D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 10 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
R + + L F + + ++ W E + P +++G K D
Sbjct: 70 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 118
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 6 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 64
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 121
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
G S + ++K ++GD +GK + Y N + + +MV G +
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNL 60
Query: 150 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 207
+WD G +D + P++ L F L S + ++ WY E R IL
Sbjct: 61 GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIIL 119
Query: 208 IGTKFD 213
+GTK D
Sbjct: 120 VGTKLD 125
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 7/120 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI LLGD +GK+S + +YV N+ + L G+ +NK L V G + IWD G
Sbjct: 12 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-----ILIGTKFD 213
R + + L F + + ++ W E + P +++G K D
Sbjct: 72 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-L 88
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R IL+GTK D
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLD 145
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 118
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-LE 214
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + + + WY E R IL+GTK D
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLD 270
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 4 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 62
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ WY E R +L+GTK D
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLD 119
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 101 LKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K +GD +GKT + Y N + + ++V G + +WD G
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFD 213
P++ + A + F L S+ + ++ W E R + IL+GTK D
Sbjct: 67 YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLD 121
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 6/173 (3%)
Query: 101 LKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K +GD +GKT + Y N+ + + + V G + +WD G
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKF---DDF 215
P++ + A + F L S+ + +++ W E R++ +L+GTK DD
Sbjct: 70 YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDK 129
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFS-SATHNINVNKIFKFIMAKLFNLP 267
L +TQ K + A + S+ NV +F + + P
Sbjct: 130 GYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205
I F IWD G R VP+ + A + +FD+++ TL+ W ++ K + I
Sbjct: 92 NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL-KISSNYII 150
Query: 206 ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
IL+ K D + D+ + + YA+ +SA N+ IF + +++
Sbjct: 151 ILVANKIDKN-KFQVDI-----LEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 4/126 (3%)
Query: 91 GYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
G + + ++K ++GD +GKT + Y N + + +MV +
Sbjct: 1 GGGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNL 60
Query: 150 SIWDVGGDSRSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPIL 207
+WD G +D + P++ L F L S + ++ W+ E R + IL
Sbjct: 61 GLWDTAG-QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIIL 119
Query: 208 IGTKFD 213
+GTK D
Sbjct: 120 VGTKLD 125
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV + +WD G
Sbjct: 3 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 61
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ W+ E R + IL+GTK D
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 118
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV + +WD G
Sbjct: 9 AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG-Q 67
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ L F L S + ++ W+ E R + IL+GTK D
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLD 124
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 12/162 (7%)
Query: 102 KISLLGDCQIGKTSFVKYVGNEQERSL-QMAGLNLINKTLMVQGAR---IAFSIWDVGGD 157
++ LLGD +GKTS +QER L + G ++ +TL V G + W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL 65
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIP-ILIGTKFDDF 215
+S+ + A + ++ + R + S + R+ +Q +P IL+G K D
Sbjct: 66 DKSWSQ-ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKA-DL 123
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257
R + RA A +SAT NV ++F+
Sbjct: 124 ARCRE----VSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 21/162 (12%)
Query: 70 SSPAPDTMEAGLVELSRTFSSGYDTDS------DLVSLKISLLGDCQIGKTSFVKYVGNE 123
SP P+ ++ G + + F S + S L +K+ L+GD GKTS +K + E
Sbjct: 5 ESPPPEIVKQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGE 64
Query: 124 --QERSLQMAGLNLINKTL-MVQG-------ARIAFSIWDVGGDS-RSFDHVPIACKDAV 172
+ Q GLN++ K ++G F WD GG H + +V
Sbjct: 65 TFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSV 124
Query: 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214
+M L SR N W K+ + I++ K D+
Sbjct: 125 ---YMLLLDSRTDSNKHY-WLRHIEKYGGKSPVIVVMNKIDE 162
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+LKI ++GD +GKT + + E + + + + +WD G
Sbjct: 23 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 81
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ D+ +L F + +R + ++I W E + + TA +L+G K D
Sbjct: 82 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 138
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 100 SLKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
+LKI ++GD +GKT + + E + + + + +WD G
Sbjct: 22 ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG-Q 80
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFD 213
+D + P++ D+ +L F + +R + ++I W E + + TA +L+G K D
Sbjct: 81 EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVD 137
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 23/136 (16%)
Query: 100 SLKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++K ++GD +GKT + Y N + + +MV G + +WD G
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG-Q 63
Query: 159 RSFDHV-PIACKDAVAILFMFDLTSRCTLNSIVG--------------------WYSEAR 197
+D + P++ V + D+TSR I WY E R
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 198 KWNQTAIPILIGTKFD 213
IL+GTK D
Sbjct: 124 HHCPNTPIILVGTKLD 139
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ V + IWD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRK----VTKGNVTIKIWDIGGQ 77
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSR 183
R C+ AI++M D R
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADR 103
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGAR---IAFSIW 152
SD K+ LLG +GK++ + G ++ A + +++++V G + + IW
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTK 211
+ G H +A DA I+ + +T + + + R+ QT +PI++
Sbjct: 63 EQDGGRWLPGHC-MAMGDAYVIV--YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
D VR + + RA A +SA + NV +F+ ++ ++
Sbjct: 120 KSDLVR----SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGAR---IAFSIW 152
SD K+ LLG +GK++ + G ++ A + +++++V G + + IW
Sbjct: 3 SDESVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIW 62
Query: 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTK 211
+ G H +A DA I+ + +T + + + R+ QT +PI++
Sbjct: 63 EQDGGRWLPGHC-MAMGDAYVIV--YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
D VR + + RA A +SA + NV +F+ ++ ++
Sbjct: 120 KSDLVR----SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 167
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ T + +WD+GG
Sbjct: 31 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 86
Query: 158 SRSFDHVPIACKDAVAILFMFD 179
R C+ AI++M D
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVD 108
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
L++ +LGD + GK+S + + L+ K ++V G I + G
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG---- 63
Query: 161 FDHVPIACKD--AVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPI-LIGTKFDD 214
P A A A++F+F L + ++ G S R + + + L+GT+ D
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ-DR 119
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 266
P + +ARA MK ++ + AT+ +NV+++F+ + K+ L
Sbjct: 120 ISASSPRVVGD--ARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160
L++ +LGD + GK+S + + L+ K ++V G I + G
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAG---- 63
Query: 161 FDHVPIACKD--AVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPI-LIGTKFDD 214
P A A A++F+F L + ++ G S R + + + L+GT+ D
Sbjct: 64 ---APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ-DR 119
Query: 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 266
P + +ARA MK ++ + AT+ +NV+++F+ + K+ L
Sbjct: 120 ISASSPRVVGD--ARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTL 170
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
++++L+G GKT+FV + + Q E + G N+ T + +WD+GG
Sbjct: 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQ 77
Query: 158 SRSFDHVPIACKDAVAILFMFD 179
R C+ AI++M D
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVD 99
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 102 KISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGAR---IAFSIWDVGGDS 158
K+ LLG +GK++ + G ++ A + +++++V G + + IW+ G
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVR 217
H +A DA I+ + +T + + + R+ QT +PI++ D VR
Sbjct: 64 WLPGHC-MAMGDAYVIV--YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
+ + RA A +SA + NV +F+ ++ ++
Sbjct: 121 ----SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 81/176 (46%), Gaps = 23/176 (13%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156
LK+ ++G+ GK++ V +Y+ QE S + K ++V G I D GG
Sbjct: 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG---RFKKEIVVDGQSYLLLIRDEGG 76
Query: 157 DSRSFDHVPIACKDAV---AILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTK 211
P + A A++F+F L + ++ ++ + N + +P +L+GT+
Sbjct: 77 --------PPELQFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128
Query: 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS-ATHNINVNKIFKFIMAKLFNL 266
D P + ++AR + +K ++ + AT+ +NV ++F+ + K+ L
Sbjct: 129 -DAISAANPRV--IDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 101 LKISLLGDCQIGKTSF-VKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
+K L+GD +GKTS V Y N + + + V G + + D G
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 160 SFDHV-PIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFD 213
FD + P+ + L F + S + ++ W E R A IL+GT+ D
Sbjct: 81 -FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSD 135
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINK 138
GL+ + R S D + ++I LLG GKT+ +K + +E + G N+ K
Sbjct: 1 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 53
Query: 139 TLMVQGARIAFSIWDVGGDSR 159
++ QG ++ ++WD+GG +
Sbjct: 54 SVQSQGFKL--NVWDIGGQRK 72
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 10/81 (12%)
Query: 80 GLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINK 138
GL+ + R S D + ++I LLG GKT+ +K + +E + G N+ K
Sbjct: 2 GLLSILRKLKSAPDQE-----VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--K 54
Query: 139 TLMVQGARIAFSIWDVGGDSR 159
++ QG ++ ++WD+GG +
Sbjct: 55 SVQSQGFKL--NVWDIGGQRK 73
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
VQ I+F++WDVGG R ++ ++F+ D R +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRI 100
>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
Length = 283
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 112 GKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARI 147
G+ +F Y+G ++E+ Q +LI + VQG RI
Sbjct: 188 GEKAFTAYLGKDREKWQQYDANSLIQQGYKVQGMRI 223
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
VQ I+F++WDVGG R ++ ++F+ D R +
Sbjct: 39 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRI 83
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 VQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL 186
VQ I+F++WDVGG R ++ ++F+ D R +
Sbjct: 56 VQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRI 100
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 8/122 (6%)
Query: 138 KTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR 197
K + V + I D G + + K+ ++ +T++ T N + +
Sbjct: 44 KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 103
Query: 198 KWNQTA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNK 254
+ T +P IL+G K D D + Q + A+ F SSA INVN+
Sbjct: 104 RVKDTDDVPMILVGNKCD-----LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 158
Query: 255 IF 256
IF
Sbjct: 159 IF 160
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 142 VQGARIAFSIWDVGGDSR 159
VQ I+F++WDVGG R
Sbjct: 56 VQYCNISFTVWDVGGQDR 73
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 77 MEAGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV---KYVGNEQE 125
M AG ++L+ + S + D L +++ G+ GK+SF+ + +GNE+E
Sbjct: 46 MRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEE 97
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDS 158
++I LLG GKT+ +K + +E + G N+ K++ QG ++ ++WD+GG
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQGFKL--NVWDIGGQR 59
Query: 159 R 159
+
Sbjct: 60 K 60
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp
Length = 164
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 100 SLKISLLGDCQIGKTSFVKYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGG 156
++I LLG GKT+ +K + +E + G N+ K++ QG ++ ++WD+GG
Sbjct: 4 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNI--KSVQSQGFKL--NVWDIGG 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,952,455
Number of Sequences: 62578
Number of extensions: 241783
Number of successful extensions: 828
Number of sequences better than 100.0: 171
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 172
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)