BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023335
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87027|SPG1_SCHPO Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spg1 PE=1 SV=1
Length = 198
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/193 (49%), Positives = 133/193 (68%), Gaps = 2/193 (1%)
Query: 93 DTDSDLVSLKISLLGDCQIGKTSF-VKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFS 150
D + V++K+ ++GD IGKTS V YV G+ E S Q G+N + KT+ ++ I FS
Sbjct: 3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFS 62
Query: 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGT 210
IWD+GG + +P+ C DAVAILFMFDL+ + TLNSI WY +AR +N+TA+PILIGT
Sbjct: 63 IWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGT 122
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTV 270
K+D F+ P + Q I QAR YAKAMKA+L F S +H+INV KIFK ++AK+F+L T+
Sbjct: 123 KYDHFMTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTI 182
Query: 271 KRNLTIGEPIIDF 283
+G+PI+++
Sbjct: 183 PEIKNVGDPILEY 195
>sp|P38987|TEM1_YEAST Protein TEM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=TEM1 PE=1 SV=1
Length = 245
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/187 (40%), Positives = 114/187 (60%), Gaps = 2/187 (1%)
Query: 99 VSLKISLLGDCQIGKTSF-VKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGG 156
V +++ L+GD Q+GKTS VKYV N ++ Q G+N + + + ++ I FSI D+GG
Sbjct: 19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGG 78
Query: 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216
+ +PIA + I+F+FDLT TL+SI WY +A N +AIPIL+GTK+D +
Sbjct: 79 QREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLI 138
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 276
L P+ Q I+ + YA+ M A L F S +IN+ KIFK +AK+FNL T+ I
Sbjct: 139 DLDPEYQEQISRTSMKYAQVMNAPLIFCSTAKSINIQKIFKIALAKIFNLTLTIPEINEI 198
Query: 277 GEPIIDF 283
G+P++ +
Sbjct: 199 GDPLLIY 205
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 8/123 (6%)
Query: 97 DLVSLKISLLGDCQIGKTSF-VKYVGNEQERSL----QMAGLNLINKTLMVQGARIAFSI 151
D V+ K LLGD +GKTSF VKY N E L G+ L NK ++V G R+ I
Sbjct: 187 DTVNHKTILLGDSGVGKTSFLVKY--NTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQI 244
Query: 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGT 210
WD G R +DA A+L ++D+T++ T ++I W E R++ Q + I LIG
Sbjct: 245 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGN 304
Query: 211 KFD 213
K D
Sbjct: 305 KAD 307
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
G R P+ + + A + ++D+T T +++ W E R+ I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
+ D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|P55745|RAB21_CANFA Ras-related protein Rab-21 OS=Canis familiaris GN=RAB21 PE=3 SV=3
Length = 223
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
G R P+ + + A + ++D+T T +++ W E R+ +I + I D
Sbjct: 63 GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 T----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|Q6AXT5|RAB21_RAT Ras-related protein Rab-21 OS=Rattus norvegicus GN=Rab21 PE=2 SV=1
Length = 223
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|Q9UL25|RAB21_HUMAN Ras-related protein Rab-21 OS=Homo sapiens GN=RAB21 PE=1 SV=3
Length = 225
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 19 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 78
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 79 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 135
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 136 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 173
>sp|Q17R06|RAB21_BOVIN Ras-related protein Rab-21 OS=Bos taurus GN=RAB21 PE=2 SV=1
Length = 222
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 16 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 75
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 76 ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKVD--- 132
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 133 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 170
>sp|P35282|RAB21_MOUSE Ras-related protein Rab-21 OS=Mus musculus GN=Rab21 PE=1 SV=4
Length = 222
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)
Query: 100 SLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157
S K+ LLG+ +GKTS V +Y N+ ++ + + + K L + G R+ +IWD G
Sbjct: 17 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 76
Query: 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFV 216
R PI +D+ + ++D+T + + W E RK I + ++G K D
Sbjct: 77 ERFHALGPIYYRDSNGAILVYDVTDEDSFQKVKNWVKELRKMLGNEICLCIVGNKID--- 133
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
L + +I +A +YA+++ A + +SA N + ++F
Sbjct: 134 -LEKERHVSI-QEAESYAESVGAKHYHTSAKQNKGIEELF 171
>sp|O49841|RAC2A_ARATH Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1
SV=1
Length = 210
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 90/206 (43%), Gaps = 21/206 (10%)
Query: 85 SRTFSSGYDTDSDLVSLKISLLGDCQIGKTS-FVKYVGNEQERSLQMAGLNLINKTLMVQ 143
S + SGYD +S KI L+GD +GK+S V ++ + E G++ K L V
Sbjct: 3 SSSGQSGYD-----LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG 57
Query: 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVG-WYSEARKW--N 200
G R+ +IWD G R + A I+ ++D+T R T ++V W E + N
Sbjct: 58 GKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTN 117
Query: 201 QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260
Q + +L+G K D + I A AK + SA NV + F+ +
Sbjct: 118 QECVRMLVGNKVDRESERGVSREEGI-----ALAKELNCMFLECSARTRQNVEQCFEELA 172
Query: 261 AKLFNLP-------WTVKRNLTIGEP 279
K+ +P VKRN+ +P
Sbjct: 173 LKIMEVPSLLEEGSSAVKRNILKQKP 198
>sp|Q54E92|RABG1_DICDI Ras-related protein RabG1 OS=Dictyostelium discoideum GN=rabG1 PE=3
SV=1
Length = 196
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 95 DSDLVSLKISLLGDCQIGKTSFV---KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSI 151
DSD+ KI L+GD +GKTS + N QE S+ M ++ NK + + G I
Sbjct: 3 DSDV--FKILLIGDSAVGKTSLLLRFTDPNNFQETSVNMTSVDYKNKNITIDGRTFNLQI 60
Query: 152 WDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGT 210
WD G R + A +L +D+T + T N++ W E +++ + +L+G
Sbjct: 61 WDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVGLWMQEIQRYGVLGVSRVLVGN 120
Query: 211 KFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
K D D + A+ A+ YA + +SAT +NV + F + +++
Sbjct: 121 KCD-----LEDRKLVNASIAQEYADILGIPFIETSATTGVNVEEAFMAMADEIY 169
>sp|Q8WQ53|RAB21_GEOCY Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1
Length = 229
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 83/165 (50%), Gaps = 16/165 (9%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
V K+ LLG+ +GKTS V +Y N+ E++LQ + + K L + G RI +IWD
Sbjct: 15 VKAKVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQAS---FVEKRLNIGGKRIQLAIWD 71
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKF 212
G R PI +D+ + ++D+T + + W E ++ + + ++G K
Sbjct: 72 TAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKI 131
Query: 213 DDFVRLPPDLQWTIATQ-ARAYAKAMKATLFFSSATHNINVNKIF 256
D D Q T++ + A YA+++ A +++SA + V ++F
Sbjct: 132 D------LDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELF 170
>sp|Q54FL2|RABG2_DICDI Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3
SV=2
Length = 197
Score = 67.8 bits (164), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 8/172 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
SD KI L+GD +GKTS + ++ N QE S+ M ++ NK +++ G IWD
Sbjct: 2 SDPDVFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWD 61
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKF 212
G R + A +L +D+T + T N++ W E +++ + +L+G K
Sbjct: 62 TAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKC 121
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
D D + + AR YA ++ +SA +NV + F + +++
Sbjct: 122 D-----LEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIY 168
>sp|P07560|SEC4_YEAST Ras-related protein SEC4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SEC4 PE=1 SV=1
Length = 215
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 79 AGLVELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSF-VKYVGNEQERS-LQMAGLNLI 136
+GL +S + +G DS +KI L+GD +GK+ V++V ++ S + G++
Sbjct: 2 SGLRTVSASSGNGKSYDS---IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 58
Query: 137 NKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEA 196
KT+ + G ++ +WD G R + A+ I+ ++D+T T +I W+
Sbjct: 59 IKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV 118
Query: 197 RKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255
+ N A +L+G K D R+ A Q A AK + SSA ++ NVN+I
Sbjct: 119 NEHANDEAQLLLVGNKSDMETRV------VTADQGEALAKELGIPFIESSAKNDDNVNEI 172
Query: 256 FKFIMAKL 263
F F +AKL
Sbjct: 173 F-FTLAKL 179
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 6/161 (3%)
Query: 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWDVG 155
L LK+ LLGD +GK+S V ++V + + ++ G + + KT+ Q F IWD
Sbjct: 3 LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
G P+ + + A + ++D+T T +++ W E R+ I + I D
Sbjct: 63 GQEAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDL 122
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
+ D++ + A+ YA ++ A +SA + IN+N++F
Sbjct: 123 I----DVREVMERDAKDYADSIHAIFVETSAKNAININELF 159
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V + QE ++ G + TL V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTLAVNNATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK-WNQTAIPILIGTKF 212
G R P+ + A A + ++D+TS + W E +K N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKA 125
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
D D + A +AR YA+ + LFF +SA +NVN IF I +L
Sbjct: 126 D-----LEDRRKVTAEEARLYAE--ENGLFFMETSAKTAVNVNAIFYEIAKRL 171
>sp|Q9JKM7|RAB37_MOUSE Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2
Length = 223
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKT 139
E S FS YD ++ K+ LLGD +GKT F+ + S + G++ NK
Sbjct: 17 ERSPPFSPNYD-----LTGKVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKV 71
Query: 140 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 199
+ V GAR+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEY 131
Query: 200 NQTAIPI-LIGTKFD 213
Q + I L+G K D
Sbjct: 132 AQRDVVIMLLGNKAD 146
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Query: 264 -FNLPWTVKRNLTIGEPI 280
N P N T G +
Sbjct: 182 PKNEPQNPGANSTRGRGV 199
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 89/198 (44%), Gaps = 9/198 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
Query: 264 -FNLPWTVKRNLTIGEPI 280
N P N T G +
Sbjct: 182 PKNEPQNPGINCTRGRGV 199
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V + QE ++ G + T+ V A + F IWD
Sbjct: 9 LNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTI---GAAFFSSTVSVNNATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKF 212
G R P+ + A A + ++D+TS +L W E +K N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKA 125
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
D D + A +AR YA+ + LFF +SA NVN IF I +L
Sbjct: 126 D-----LEDKRKVTAEEARLYAE--ENGLFFMETSAKTATNVNDIFYEIAKRL 171
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 8/180 (4%)
Query: 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQG 144
T +G +T + + K+ LLG+ +GK+S V ++V G E G + +T+ +
Sbjct: 7 TRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD 66
Query: 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204
+ F IWD G R P+ + A A + ++D+T+ + W E ++ I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI 126
Query: 205 PI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
I L G K D + D Q +A++YA +SA ++NVN+IF I KL
Sbjct: 127 VIALSGNKADLANKRAVDFQ-----EAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181
>sp|Q550H6|RB11C_DICDI Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C
PE=1 SV=1
Length = 224
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI ++GD +GK++ + ++ NE E++ G++ K++ + I WD G
Sbjct: 11 FKIVIIGDSAVGKSNLLNRFTRNEFTEKTKATIGVDFGTKSIEIDNKTITAQCWDTAGQE 70
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPIL-IGTKFD-DFV 216
R + AV + ++D+TS+ + ++ W +E R+ + I I+ +G K D +
Sbjct: 71 RFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMS 130
Query: 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
R P +A+A+A++ K + +SA ++ NVN+ F+ ++ +++L
Sbjct: 131 REVP------TKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHL 174
>sp|Q9FIF9|RAA2D_ARATH Ras-related protein RABA2d OS=Arabidopsis thaliana GN=RABA2D PE=2
SV=1
Length = 217
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
KI L+GD +GKT+ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKIVLIGDSGVGKTNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFDDFVR 217
R + AV L ++D+T R T ++++ W E R + I I++ G K D
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKAD---- 128
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
L+ + A+ + +SA NV K F+ ++A+++++
Sbjct: 129 -LNHLRSVAEEDGQTLAETEGLSFLETSALEATNVEKAFQTVLAEIYHI 176
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 125
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
D D + A A+ YA+ + LFF +SA NV +IF I +L
Sbjct: 126 DLL-----DARKVTAEDAQTYAQ--ENGLFFMETSAKTATNVKEIFYEIARRL 171
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 83/173 (47%), Gaps = 18/173 (10%)
Query: 99 VSLKISLLGDCQIGKTSFV-KYVGNE----QERSLQMAGLNLINKTLMVQGARIAFSIWD 153
++ K+ LLGD GK+S V ++V ++ QE ++ G ++TL V A + F IWD
Sbjct: 9 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTI---GAAFFSQTLAVNDATVKFEIWD 65
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
G R P+ + A A + +FD+T++ + W E + + N + L G K
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKL 263
D D + A +A YA+ + +LFF +SA NV IF I +L
Sbjct: 126 DLL-----DARKVSAEEAEIYAQ--ENSLFFMETSAKTATNVKDIFYEIAKRL 171
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G
Sbjct: 13 FKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQE 72
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVR 217
R + A+ L ++D+T T ++ W E R + I I LIG K D
Sbjct: 73 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTD---- 128
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
L+ A++YA+ + +SA +NV K F+ I+++++ +
Sbjct: 129 -LKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRI 176
>sp|Q9UBK7|RBL2A_HUMAN Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1
Length = 228
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 92 YDTDSDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
YD D ++ KI LGD +GK+ ++ + Q + L L L T V G I
Sbjct: 16 YDADDNV---KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILV 72
Query: 150 SIWDVGGDSR------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA 203
WD G R S+ H AC + +FD+ + T ++ WY+E R++
Sbjct: 73 DFWDTAGQERFQSMHASYYHKAHAC------IMVFDIQRKVTYRNLSTWYTELREFRPEI 126
Query: 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
I++ K DD + ++ +AK L+F SA NV K+F
Sbjct: 127 PCIVVANKIDDI---------NVTQKSFNFAKKFSLPLYFVSAADGTNVVKLF 170
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 204
I +WD G R +P +D+ A + ++D+T+ + W + R + I
Sbjct: 61 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 265 NLPWT 269
+ T
Sbjct: 176 GMEST 180
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G R
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219
+ AV L ++D+T R T +++ W E R + I I++ D L
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLR 133
Query: 220 PDLQWTIATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFNL 266
++ A A K L F +SA +N+ K F+ I+ +++++
Sbjct: 134 A------VSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHI 176
>sp|P46638|RB11B_MOUSE Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3
Length = 218
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1
SV=1
Length = 208
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGARIAFSIWD 153
S L K+ LGD +GKTS + +++ ++ + + Q G++ ++KT+ ++ + +WD
Sbjct: 5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
Query: 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAIPILIGTKF 212
G R +P +D+ + ++D+ SR + + W E R + I +L+G K
Sbjct: 65 TAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLVGNKT 124
Query: 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
D L Q +I +A A A+ + +SA N+ +F+ I A L
Sbjct: 125 D----LVDKRQVSIE-EAEAKARELNVMFIETSAKAGFNIKALFRKIAAAL 170
>sp|O35509|RB11B_RAT Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2
SV=4
Length = 218
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q15907|RB11B_HUMAN Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4
Length = 218
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q3MHP2|RB11B_BOVIN Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3
Length = 218
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R + I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q96AX2|RAB37_HUMAN Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3
Length = 223
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 83 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVKYVGNEQERS---LQMAGLNLINKT 139
E S S YD ++ K+ LLGD +GKT F+ + S + G++ NK
Sbjct: 17 ERSPPCSPSYD-----LTGKVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKV 71
Query: 140 LMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW 199
+ V G R+ IWD G R +DA A+L ++D+T++ + ++I W +E ++
Sbjct: 72 VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY 131
Query: 200 NQTAIPI-LIGTKFD 213
Q + I L+G K D
Sbjct: 132 AQRDVVIMLLGNKAD 146
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 204
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 265 NLPWTVKRN 273
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 204
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 265 NLPWTVKRN 273
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|Q9LNW1|RAA2B_ARATH Ras-related protein RABA2b OS=Arabidopsis thaliana GN=RABA2B PE=2
SV=2
Length = 214
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 102 KISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159
KI L+GD +GK++ + ++ NE S G+ +TL V+G + IWD G R
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQER 73
Query: 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILI-GTKFD-DFVR 217
+ AV L ++D+T R T +++ W E R + I I++ G K D + +R
Sbjct: 74 YRAITSAYYRGAVGALLVYDITKRQTFENVLRWLRELRDHADSNIVIMMAGNKSDLNHLR 133
Query: 218 LPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
D R+ A+ + +SA N+ K F+ I+++++++
Sbjct: 134 SVAD------EDGRSLAEKEGLSFLETSALEATNIEKAFQTILSEIYHI 176
>sp|P22129|RB11B_DIPOM Ras-related protein Rab-11B OS=Diplobatis ommata PE=2 SV=1
Length = 218
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 101 LKISLLGDCQIGKTSFV-KYVGNE-QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158
K+ L+GD +GK++ + ++ NE S G+ +++ V G I IWD G
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD--DF 215
R + AV L ++D+ T ++ W E R I I L+G K D
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADNNIVIMLVGNKSDLRHL 131
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
+P D +ARA+A+ + +SA + NV + FK I+ +++ +
Sbjct: 132 RAVPTD-------EARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 175
>sp|Q9UNT1|RBL2B_HUMAN Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1
Length = 228
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 92 YDTDSDLVSLKISLLGDCQIGKTSFVK--YVGNEQERSLQMAGLNLINKTLMVQGARIAF 149
YD D ++ KI LGD +GK+ ++ + Q + L L L T V G I
Sbjct: 16 YDADDNV---KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILV 72
Query: 150 SIWDVGGDSR------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA 203
WD G R S+ H AC + +FD+ + T ++ WY+E R++
Sbjct: 73 DFWDTAGQERFQSMHASYYHKAHAC------IMVFDVQRKVTYRNLSTWYTELREFRPEI 126
Query: 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256
I++ K DD + ++ +AK L+F SA NV K+F
Sbjct: 127 PCIVVANKIDDI---------NVTQKSFNFAKKFSLPLYFVSAADGTNVVKLF 170
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 204
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 265 NLPWTVKRN 273
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 88 FSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMA-GLNLINKTLMVQGA 145
S+G D + L K+ LG+ +GKTS + +++ + + + Q G++ ++KT+ ++
Sbjct: 1 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 60
Query: 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEAR-KWNQTAI 204
+ +WD G R +P +D+ + ++D+T+ + W + R + I
Sbjct: 61 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 120
Query: 205 PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264
+L+G K D L Q +I R AK + +SA NV ++F+ + A L
Sbjct: 121 IMLVGNKTD----LADKRQVSIEEGERK-AKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
Query: 265 NLPWTVKRN 273
+ T R+
Sbjct: 176 GMESTQDRS 184
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G + + K+ LLG+ +GK+S V ++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 206
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
L G K D + + Q +A+AYA +SA +NVN+IF I K L
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---L 182
Query: 267 PWTVKRNLTIGEP 279
P +N T G P
Sbjct: 183 PKNEPQNAT-GAP 194
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 12/193 (6%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G + + K+ LLG+ +GK+S V ++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 206
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266
L G K D + + Q +A+AYA +SA +NVN+IF I K L
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK---L 182
Query: 267 PWTVKRNLTIGEP 279
P +N T G P
Sbjct: 183 PKNEPQNAT-GAP 194
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 8/177 (4%)
Query: 90 SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYV-GNEQERSLQMAGLNLINKTLMVQGARI 147
+G + + K+ LLG+ +GK+S V ++V G E G + +T+ + +
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTV 70
Query: 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI- 206
F IWD G R P+ + A A + ++D+T+ T W E ++ I I
Sbjct: 71 KFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIA 130
Query: 207 LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263
L G K D + + Q +A+AYA+ +SA +NVN+IF I KL
Sbjct: 131 LAGNKADLASKRAVEFQ-----EAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
>sp|P41915|RAN_TETTH GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2
SV=1
Length = 225
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 98 LVSLKISLLGDCQIGKTSFV--KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155
+ K+ L+GD +GKT+FV G ++R + G+N+ N L I F+IWD
Sbjct: 9 VAEFKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTA 68
Query: 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215
G + A A + MFD+TSR T +I W+ + + + +L+G K D
Sbjct: 69 GQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICENIPIVLVGNKVDSK 128
Query: 216 VRLPPDLQWTIATQARAYAKAMKATLFFS--SATHNINVNKIFKFIMAKLFNLP 267
R +AR K +L + SA N K F +I+ KL P
Sbjct: 129 DR---------KVKARQITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKLTGDP 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,565,953
Number of Sequences: 539616
Number of extensions: 3529556
Number of successful extensions: 11346
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 419
Number of HSP's that attempted gapping in prelim test: 10816
Number of HSP's gapped (non-prelim): 594
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)