Query 023335
Match_columns 283
No_of_seqs 393 out of 1963
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.4E-41 3.1E-46 272.3 17.7 166 97-267 6-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 3.8E-41 8.3E-46 268.8 18.0 168 98-270 3-173 (200)
3 KOG0078 GTP-binding protein SE 100.0 1E-39 2.3E-44 265.2 18.5 167 96-267 8-177 (207)
4 KOG0080 GTPase Rab18, small G 100.0 1.3E-39 2.7E-44 252.0 16.1 171 97-272 8-182 (209)
5 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 3.9E-39 8.5E-44 257.3 17.8 168 95-267 17-188 (221)
6 KOG0098 GTPase Rab2, small G p 100.0 2.3E-39 5E-44 256.6 14.5 165 98-267 4-171 (216)
7 KOG1673 Ras GTPases [General f 100.0 2.7E-38 5.8E-43 243.3 15.1 191 93-283 13-205 (205)
8 KOG0079 GTP-binding protein H- 100.0 1.3E-38 2.7E-43 243.2 11.0 164 99-267 7-172 (198)
9 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4E-37 8.6E-42 254.3 20.7 180 101-280 1-182 (182)
10 KOG0394 Ras-related GTPase [Ge 100.0 3E-37 6.6E-42 244.2 15.9 168 98-269 7-183 (210)
11 KOG0087 GTPase Rab11/YPT3, sma 100.0 9.3E-37 2E-41 246.9 16.2 168 95-267 9-179 (222)
12 cd04121 Rab40 Rab40 subfamily. 100.0 5.4E-36 1.2E-40 248.6 20.7 164 99-267 5-170 (189)
13 KOG0093 GTPase Rab3, small G p 100.0 1.5E-36 3.2E-41 231.6 14.8 164 99-267 20-186 (193)
14 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-35 2.4E-40 249.1 19.8 161 101-266 1-165 (202)
15 cd04133 Rop_like Rop subfamily 100.0 3.3E-35 7.1E-40 241.3 20.3 165 101-266 2-175 (176)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 3.4E-35 7.3E-40 242.6 19.7 167 98-265 3-181 (182)
17 KOG0095 GTPase Rab30, small G 100.0 6.7E-36 1.5E-40 228.7 13.1 164 98-266 5-171 (213)
18 KOG0091 GTPase Rab39, small G 100.0 5.2E-36 1.1E-40 232.5 11.5 165 98-267 6-176 (213)
19 KOG0088 GTPase Rab21, small G 100.0 6.9E-36 1.5E-40 230.7 11.8 167 98-269 11-180 (218)
20 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-34 2.6E-39 238.6 19.3 164 100-264 1-176 (178)
21 KOG0086 GTPase Rab4, small G p 100.0 1.8E-35 4E-40 227.1 12.6 165 98-267 7-174 (214)
22 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 4.2E-34 9E-39 243.8 20.2 168 98-266 11-190 (232)
23 cd01875 RhoG RhoG subfamily. 100.0 7E-34 1.5E-38 236.7 19.9 167 99-266 2-179 (191)
24 cd04122 Rab14 Rab14 subfamily. 100.0 2.6E-33 5.6E-38 227.7 19.5 161 100-265 2-165 (166)
25 KOG0083 GTPase Rab26/Rab37, sm 100.0 3.4E-35 7.5E-40 220.8 7.3 161 104-269 1-165 (192)
26 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 4.4E-33 9.4E-38 233.7 20.0 167 101-272 1-176 (201)
27 PLN03071 GTP-binding nuclear p 100.0 4.8E-33 1E-37 236.4 20.3 162 98-266 11-174 (219)
28 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4E-33 8.7E-38 236.5 19.3 167 100-267 1-179 (222)
29 cd01874 Cdc42 Cdc42 subfamily. 100.0 5.6E-33 1.2E-37 228.1 19.6 162 101-263 2-174 (175)
30 cd04117 Rab15 Rab15 subfamily. 100.0 5.7E-33 1.2E-37 224.9 19.1 157 101-262 1-160 (161)
31 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 5E-33 1.1E-37 227.7 18.6 161 100-266 2-166 (172)
32 KOG0081 GTPase Rab27, small G 100.0 1.8E-34 4E-39 222.9 8.0 165 98-267 7-184 (219)
33 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-32 3.5E-37 224.3 19.2 163 102-267 2-168 (170)
34 PF00071 Ras: Ras family; Int 100.0 1E-32 2.3E-37 222.8 17.8 158 102-264 1-161 (162)
35 cd01867 Rab8_Rab10_Rab13_like 100.0 2.2E-32 4.8E-37 222.5 19.2 162 99-265 2-166 (167)
36 cd04127 Rab27A Rab27a subfamil 100.0 1.6E-32 3.4E-37 225.8 18.4 162 99-265 3-178 (180)
37 cd01865 Rab3 Rab3 subfamily. 100.0 3.2E-32 7E-37 221.1 19.5 160 101-265 2-164 (165)
38 cd00877 Ran Ran (Ras-related n 100.0 4.5E-32 9.8E-37 220.8 19.7 160 101-267 1-162 (166)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 4.3E-32 9.4E-37 220.3 19.5 161 100-265 2-165 (166)
40 cd01871 Rac1_like Rac1-like su 100.0 4.2E-32 9.1E-37 222.7 19.2 161 101-262 2-173 (174)
41 KOG0097 GTPase Rab14, small G 100.0 5.4E-33 1.2E-37 211.1 12.5 168 99-271 10-180 (215)
42 cd04110 Rab35 Rab35 subfamily. 100.0 7.1E-32 1.5E-36 226.0 20.6 164 99-267 5-170 (199)
43 cd04109 Rab28 Rab28 subfamily. 100.0 4.2E-32 9E-37 230.1 19.3 162 101-267 1-169 (215)
44 cd04136 Rap_like Rap-like subf 100.0 6E-32 1.3E-36 218.3 19.1 158 100-263 1-162 (163)
45 cd04119 RJL RJL (RabJ-Like) su 100.0 6.4E-32 1.4E-36 218.8 18.8 160 101-265 1-168 (168)
46 cd04134 Rho3 Rho3 subfamily. 100.0 6.6E-32 1.4E-36 224.4 19.2 166 101-267 1-177 (189)
47 cd04124 RabL2 RabL2 subfamily. 100.0 1.1E-31 2.4E-36 217.2 20.0 158 101-266 1-160 (161)
48 cd04103 Centaurin_gamma Centau 100.0 6.1E-32 1.3E-36 218.3 18.2 153 101-262 1-157 (158)
49 smart00176 RAN Ran (Ras-relate 100.0 7.4E-32 1.6E-36 225.6 19.3 154 106-266 1-156 (200)
50 cd04175 Rap1 Rap1 subgroup. T 100.0 1.3E-31 2.8E-36 217.1 19.1 158 100-263 1-162 (164)
51 cd04144 Ras2 Ras2 subfamily. 100.0 8.5E-32 1.8E-36 223.9 18.4 162 102-269 1-168 (190)
52 cd04126 Rab20 Rab20 subfamily. 100.0 8.4E-32 1.8E-36 228.2 18.4 164 101-268 1-194 (220)
53 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-31 2.7E-36 223.7 18.8 161 100-262 2-194 (195)
54 cd04112 Rab26 Rab26 subfamily. 100.0 1.4E-31 2.9E-36 222.8 19.0 164 101-269 1-168 (191)
55 PTZ00369 Ras-like protein; Pro 100.0 1.7E-31 3.6E-36 221.9 19.5 163 99-267 4-170 (189)
56 cd04176 Rap2 Rap2 subgroup. T 100.0 2.1E-31 4.5E-36 215.6 19.1 159 100-263 1-162 (163)
57 cd04125 RabA_like RabA-like su 100.0 2.6E-31 5.7E-36 220.4 19.7 162 101-267 1-165 (188)
58 cd04111 Rab39 Rab39 subfamily. 100.0 1.7E-31 3.6E-36 225.7 18.6 163 100-267 2-169 (211)
59 cd01868 Rab11_like Rab11-like. 100.0 2.9E-31 6.3E-36 215.1 19.0 159 100-263 3-164 (165)
60 cd04138 H_N_K_Ras_like H-Ras/N 100.0 4.7E-31 1E-35 212.5 19.4 157 100-263 1-161 (162)
61 cd04132 Rho4_like Rho4-like su 100.0 3.3E-31 7.3E-36 219.4 18.9 167 101-269 1-172 (187)
62 cd04106 Rab23_lke Rab23-like s 100.0 2.8E-31 6E-36 214.4 18.0 157 101-262 1-161 (162)
63 smart00174 RHO Rho (Ras homolo 100.0 5.3E-31 1.1E-35 215.4 19.3 162 103-265 1-173 (174)
64 cd01866 Rab2 Rab2 subfamily. 100.0 6.5E-31 1.4E-35 214.1 19.6 161 100-265 4-167 (168)
65 cd04130 Wrch_1 Wrch-1 subfamil 100.0 5.5E-31 1.2E-35 215.6 19.2 161 101-261 1-171 (173)
66 cd04116 Rab9 Rab9 subfamily. 100.0 6.1E-31 1.3E-35 214.4 19.2 159 99-263 4-170 (170)
67 cd04118 Rab24 Rab24 subfamily. 100.0 7.4E-31 1.6E-35 218.4 20.1 166 101-267 1-169 (193)
68 PLN03110 Rab GTPase; Provision 100.0 6.1E-31 1.3E-35 223.1 19.7 162 99-265 11-175 (216)
69 cd01864 Rab19 Rab19 subfamily. 100.0 9E-31 2E-35 212.4 18.4 160 99-263 2-165 (165)
70 cd04142 RRP22 RRP22 subfamily. 100.0 1.4E-30 2.9E-35 218.0 19.9 164 101-269 1-179 (198)
71 cd04140 ARHI_like ARHI subfami 100.0 1.3E-30 2.9E-35 211.6 19.3 155 101-261 2-162 (165)
72 PLN03108 Rab family protein; P 100.0 1.9E-30 4.1E-35 219.2 20.0 164 99-267 5-171 (210)
73 smart00173 RAS Ras subfamily o 100.0 1.9E-30 4.2E-35 210.0 19.3 158 101-264 1-162 (164)
74 cd04113 Rab4 Rab4 subfamily. 100.0 1.5E-30 3.2E-35 210.2 18.3 158 101-263 1-161 (161)
75 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.6E-30 3.6E-35 212.2 18.8 159 100-263 2-168 (170)
76 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.7E-30 3.7E-35 210.3 18.3 158 101-263 1-163 (164)
77 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.1E-30 6.8E-35 208.5 19.7 158 100-263 2-163 (164)
78 KOG0393 Ras-related small GTPa 100.0 3.7E-31 8.1E-36 216.0 13.9 169 99-268 3-183 (198)
79 PLN03118 Rab family protein; P 100.0 8.5E-30 1.8E-34 215.3 20.8 167 99-270 13-183 (211)
80 smart00175 RAB Rab subfamily o 100.0 6.1E-30 1.3E-34 206.7 18.9 160 101-265 1-163 (164)
81 cd04135 Tc10 TC10 subfamily. 100.0 1.1E-29 2.4E-34 207.6 19.6 164 101-264 1-174 (174)
82 cd01861 Rab6 Rab6 subfamily. 100.0 9.2E-30 2E-34 205.2 18.4 157 101-262 1-160 (161)
83 cd04143 Rhes_like Rhes_like su 100.0 8.3E-30 1.8E-34 219.9 18.7 157 101-263 1-170 (247)
84 cd04146 RERG_RasL11_like RERG/ 100.0 8.4E-30 1.8E-34 206.7 17.6 157 102-264 1-164 (165)
85 cd01860 Rab5_related Rab5-rela 100.0 1.7E-29 3.8E-34 204.0 19.0 159 100-263 1-162 (163)
86 cd01892 Miro2 Miro2 subfamily. 100.0 1.3E-29 2.7E-34 207.0 18.1 161 99-265 3-167 (169)
87 cd04177 RSR1 RSR1 subgroup. R 100.0 4.4E-29 9.6E-34 203.2 19.6 159 100-264 1-164 (168)
88 KOG0395 Ras-related GTPase [Ge 100.0 2E-29 4.4E-34 209.6 17.8 162 99-265 2-166 (196)
89 cd01863 Rab18 Rab18 subfamily. 100.0 4.7E-29 1E-33 201.2 19.3 156 101-262 1-160 (161)
90 cd04148 RGK RGK subfamily. Th 100.0 3.6E-29 7.8E-34 212.9 19.5 160 101-267 1-166 (221)
91 cd01862 Rab7 Rab7 subfamily. 100.0 5.8E-29 1.2E-33 202.6 19.2 161 101-266 1-169 (172)
92 cd01870 RhoA_like RhoA-like su 100.0 6.3E-29 1.4E-33 203.3 19.4 162 101-263 2-174 (175)
93 cd04129 Rho2 Rho2 subfamily. 100.0 1.7E-28 3.7E-33 203.5 20.1 167 101-268 2-177 (187)
94 cd04123 Rab21 Rab21 subfamily. 100.0 1.6E-28 3.4E-33 197.7 19.0 158 101-263 1-161 (162)
95 cd04114 Rab30 Rab30 subfamily. 100.0 2.6E-28 5.7E-33 198.4 20.1 160 99-263 6-168 (169)
96 cd04149 Arf6 Arf6 subfamily. 100.0 7.2E-29 1.6E-33 202.3 14.3 152 99-261 8-167 (168)
97 cd04139 RalA_RalB RalA/RalB su 100.0 5.7E-28 1.2E-32 195.0 19.2 159 101-265 1-163 (164)
98 cd01893 Miro1 Miro1 subfamily. 100.0 5.5E-28 1.2E-32 196.5 18.1 161 101-265 1-165 (166)
99 PTZ00132 GTP-binding nuclear p 100.0 9.7E-28 2.1E-32 203.3 20.0 167 95-268 4-172 (215)
100 cd04158 ARD1 ARD1 subfamily. 100.0 2E-28 4.3E-33 199.8 15.1 156 102-268 1-165 (169)
101 cd04150 Arf1_5_like Arf1-Arf5- 100.0 2.7E-28 6E-33 197.1 14.9 151 101-261 1-158 (159)
102 smart00177 ARF ARF-like small 100.0 2E-28 4.4E-33 201.0 14.1 155 99-264 12-174 (175)
103 PLN00223 ADP-ribosylation fact 100.0 3E-28 6.5E-33 201.0 14.5 154 99-266 16-180 (181)
104 cd00157 Rho Rho (Ras homology) 100.0 1.9E-27 4E-32 193.5 18.9 160 101-261 1-170 (171)
105 cd00154 Rab Rab family. Rab G 100.0 1.6E-27 3.5E-32 190.4 17.5 155 101-260 1-158 (159)
106 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 1.9E-28 4.2E-33 199.0 12.2 151 103-261 2-163 (164)
107 cd04147 Ras_dva Ras-dva subfam 100.0 2.2E-27 4.8E-32 198.6 18.9 163 102-268 1-167 (198)
108 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 5E-28 1.1E-32 200.0 14.5 166 100-272 3-178 (183)
109 cd04102 RabL3 RabL3 (Rab-like3 100.0 2E-27 4.3E-32 198.9 18.2 149 101-250 1-176 (202)
110 PTZ00133 ADP-ribosylation fact 100.0 7.3E-28 1.6E-32 198.9 13.3 157 99-266 16-180 (182)
111 cd00876 Ras Ras family. The R 100.0 4.3E-27 9.3E-32 188.9 17.3 156 102-263 1-160 (160)
112 cd04137 RheB Rheb (Ras Homolog 100.0 1E-26 2.2E-31 191.3 18.6 164 101-270 2-169 (180)
113 PRK12299 obgE GTPase CgtA; Rev 99.9 8.4E-27 1.8E-31 208.9 18.0 205 42-266 110-330 (335)
114 cd04154 Arl2 Arl2 subfamily. 99.9 8.6E-27 1.9E-31 190.7 15.1 152 99-261 13-172 (173)
115 cd04156 ARLTS1 ARLTS1 subfamil 99.9 9.7E-27 2.1E-31 187.5 12.7 154 102-261 1-159 (160)
116 PLN00023 GTP-binding protein; 99.9 3.9E-26 8.6E-31 200.5 16.8 141 96-239 17-189 (334)
117 KOG4252 GTP-binding protein [S 99.9 2.1E-28 4.6E-33 192.9 1.8 165 98-267 18-184 (246)
118 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3.2E-26 6.9E-31 187.7 14.5 152 100-261 15-173 (174)
119 PTZ00099 rab6; Provisional 99.9 1.3E-25 2.9E-30 184.3 17.9 143 122-269 3-147 (176)
120 TIGR02729 Obg_CgtA Obg family 99.9 9.4E-26 2E-30 201.9 18.3 200 43-263 110-328 (329)
121 cd04157 Arl6 Arl6 subfamily. 99.9 3.1E-26 6.7E-31 184.7 12.3 152 102-261 1-161 (162)
122 cd04151 Arl1 Arl1 subfamily. 99.9 3.1E-26 6.6E-31 184.6 11.5 150 102-261 1-157 (158)
123 PRK12297 obgE GTPase CgtA; Rev 99.9 8E-25 1.7E-29 200.8 18.5 203 42-268 110-331 (424)
124 cd00878 Arf_Arl Arf (ADP-ribos 99.9 3.3E-25 7.1E-30 178.3 13.9 149 102-261 1-157 (158)
125 cd00879 Sar1 Sar1 subfamily. 99.9 7E-25 1.5E-29 181.9 14.9 154 99-263 18-190 (190)
126 cd04161 Arl2l1_Arl13_like Arl2 99.9 7E-25 1.5E-29 178.5 12.9 151 102-261 1-166 (167)
127 cd04160 Arfrp1 Arfrp1 subfamil 99.9 4.3E-25 9.4E-30 179.1 10.6 149 102-261 1-166 (167)
128 PRK12298 obgE GTPase CgtA; Rev 99.9 1.1E-23 2.3E-28 192.4 17.9 216 42-278 111-347 (390)
129 PRK12296 obgE GTPase CgtA; Rev 99.9 1E-23 2.2E-28 195.9 17.7 204 42-267 111-343 (500)
130 smart00178 SAR Sar1p-like memb 99.9 5.9E-24 1.3E-28 175.8 14.4 153 99-262 16-183 (184)
131 cd01897 NOG NOG1 is a nucleola 99.9 2.5E-23 5.5E-28 168.8 16.6 154 102-264 2-168 (168)
132 PF00025 Arf: ADP-ribosylation 99.9 2E-23 4.2E-28 171.4 15.7 155 98-263 12-175 (175)
133 cd01890 LepA LepA subfamily. 99.9 2.1E-23 4.5E-28 171.2 15.8 152 102-263 2-176 (179)
134 cd01898 Obg Obg subfamily. Th 99.9 3.1E-23 6.8E-28 168.5 16.2 154 102-262 2-169 (170)
135 cd04159 Arl10_like Arl10-like 99.9 1.4E-23 3E-28 167.7 13.3 150 102-261 1-158 (159)
136 COG1100 GTPase SAR1 and relate 99.9 4.7E-23 1E-27 174.6 16.6 168 100-267 5-188 (219)
137 KOG0073 GTP-binding ADP-ribosy 99.9 3.9E-23 8.4E-28 161.1 14.6 164 98-266 14-180 (185)
138 TIGR02528 EutP ethanolamine ut 99.9 9.4E-24 2E-28 166.9 10.0 133 102-260 2-141 (142)
139 TIGR00231 small_GTP small GTP- 99.9 2.5E-22 5.4E-27 159.7 17.2 154 100-259 1-159 (161)
140 cd04155 Arl3 Arl3 subfamily. 99.9 8.6E-23 1.9E-27 166.6 14.4 149 99-261 13-172 (173)
141 cd04171 SelB SelB subfamily. 99.9 1.2E-22 2.5E-27 163.8 14.3 151 102-261 2-163 (164)
142 KOG0070 GTP-binding ADP-ribosy 99.9 9.2E-23 2E-27 162.9 13.2 163 96-266 13-180 (181)
143 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 1.2E-22 2.5E-27 162.1 9.9 164 98-268 8-173 (216)
144 PRK15494 era GTPase Era; Provi 99.9 2.1E-21 4.5E-26 175.0 18.1 168 98-279 50-231 (339)
145 cd01878 HflX HflX subfamily. 99.9 1E-21 2.3E-26 164.8 13.6 153 100-263 41-204 (204)
146 cd01879 FeoB Ferrous iron tran 99.9 3.9E-21 8.4E-26 154.1 15.4 146 105-263 1-156 (158)
147 PF08477 Miro: Miro-like prote 99.9 1.3E-21 2.9E-26 149.9 12.1 112 102-213 1-119 (119)
148 TIGR00436 era GTP-binding prot 99.9 6.5E-21 1.4E-25 167.0 17.9 165 102-279 2-179 (270)
149 PRK03003 GTP-binding protein D 99.9 5.5E-21 1.2E-25 179.7 18.6 254 4-265 107-383 (472)
150 cd01891 TypA_BipA TypA (tyrosi 99.9 2.5E-21 5.5E-26 161.4 12.9 147 101-254 3-172 (194)
151 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 1.2E-20 2.7E-25 152.8 14.6 156 102-264 2-166 (168)
152 KOG3883 Ras family small GTPas 99.9 2.5E-20 5.5E-25 143.7 14.8 163 100-267 9-178 (198)
153 cd00882 Ras_like_GTPase Ras-li 99.9 3.3E-20 7.2E-25 145.7 15.3 152 105-260 1-156 (157)
154 TIGR03594 GTPase_EngA ribosome 99.8 5.9E-20 1.3E-24 171.1 19.5 252 4-265 68-345 (429)
155 PRK04213 GTP-binding protein; 99.8 6.7E-21 1.4E-25 159.5 11.0 149 99-266 8-194 (201)
156 KOG0075 GTP-binding ADP-ribosy 99.8 4.5E-21 9.7E-26 146.9 8.9 159 99-263 19-181 (186)
157 KOG0071 GTP-binding ADP-ribosy 99.8 2.2E-20 4.7E-25 142.1 12.4 155 99-264 16-178 (180)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.8 4.4E-20 9.4E-25 171.4 17.1 149 100-266 203-362 (442)
159 TIGR03156 GTP_HflX GTP-binding 99.8 2.6E-20 5.6E-25 168.3 15.0 150 100-262 189-350 (351)
160 KOG4423 GTP-binding protein-li 99.8 1.2E-22 2.7E-27 161.4 -0.1 166 98-267 23-197 (229)
161 COG0536 Obg Predicted GTPase [ 99.8 5.3E-20 1.2E-24 159.9 15.5 205 43-267 112-336 (369)
162 cd04164 trmE TrmE (MnmE, ThdF, 99.8 1.3E-19 2.8E-24 144.7 16.0 144 101-263 2-156 (157)
163 cd01881 Obg_like The Obg-like 99.8 3.9E-20 8.5E-25 150.8 13.2 152 105-262 1-175 (176)
164 PRK03003 GTP-binding protein D 99.8 6.2E-20 1.4E-24 172.5 15.2 152 100-265 38-200 (472)
165 cd01889 SelB_euk SelB subfamil 99.8 6.4E-20 1.4E-24 152.7 13.3 159 101-265 1-187 (192)
166 PRK05291 trmE tRNA modificatio 99.8 9.4E-20 2E-24 169.9 15.4 146 100-265 215-371 (449)
167 PRK15467 ethanolamine utilizat 99.8 7.8E-20 1.7E-24 147.5 12.5 139 102-265 3-148 (158)
168 cd01894 EngA1 EngA1 subfamily. 99.8 2.6E-19 5.7E-24 143.0 14.9 145 104-263 1-157 (157)
169 cd00881 GTP_translation_factor 99.8 1.6E-19 3.4E-24 148.8 13.8 154 102-263 1-186 (189)
170 TIGR01393 lepA GTP-binding pro 99.8 2E-19 4.3E-24 172.5 15.1 155 101-265 4-181 (595)
171 COG1160 Predicted GTPases [Gen 99.8 8.3E-19 1.8E-23 158.4 17.8 249 2-264 71-351 (444)
172 cd04105 SR_beta Signal recogni 99.8 2.6E-19 5.7E-24 150.3 13.4 116 102-217 2-124 (203)
173 PF02421 FeoB_N: Ferrous iron 99.8 3E-19 6.6E-24 142.4 12.2 146 101-259 1-156 (156)
174 cd01895 EngA2 EngA2 subfamily. 99.8 2.5E-18 5.3E-23 139.3 17.3 154 100-262 2-173 (174)
175 PRK00454 engB GTP-binding prot 99.8 8.9E-19 1.9E-23 145.8 14.8 155 99-264 23-194 (196)
176 PRK00089 era GTPase Era; Revie 99.8 2.1E-18 4.6E-23 152.8 17.4 171 99-279 4-186 (292)
177 PRK11058 GTPase HflX; Provisio 99.8 1.2E-18 2.5E-23 161.0 16.3 155 101-266 198-364 (426)
178 TIGR03598 GTPase_YsxC ribosome 99.8 1.1E-18 2.4E-23 143.5 12.0 148 97-253 15-179 (179)
179 TIGR00487 IF-2 translation ini 99.8 4.5E-18 9.7E-23 162.6 17.2 156 98-261 85-247 (587)
180 cd01888 eIF2_gamma eIF2-gamma 99.8 1.7E-18 3.7E-23 145.4 12.7 111 147-265 83-200 (203)
181 TIGR00437 feoB ferrous iron tr 99.8 2.9E-18 6.2E-23 164.6 15.7 144 107-263 1-154 (591)
182 PRK00093 GTP-binding protein D 99.8 3.1E-18 6.6E-23 159.9 15.5 146 101-263 2-161 (435)
183 cd04163 Era Era subfamily. Er 99.8 6.9E-18 1.5E-22 135.5 15.4 153 100-262 3-167 (168)
184 PRK00093 GTP-binding protein D 99.8 1.2E-17 2.5E-22 155.9 18.5 248 4-264 70-344 (435)
185 TIGR00475 selB selenocysteine- 99.8 3.3E-18 7.1E-23 164.0 15.0 155 101-266 1-168 (581)
186 KOG1489 Predicted GTP-binding 99.8 1E-17 2.2E-22 144.2 15.5 196 43-261 149-364 (366)
187 CHL00189 infB translation init 99.8 5.8E-18 1.3E-22 164.2 14.6 156 98-263 242-409 (742)
188 PRK09518 bifunctional cytidyla 99.8 5.5E-18 1.2E-22 166.5 14.6 249 4-265 344-622 (712)
189 KOG0072 GTP-binding ADP-ribosy 99.8 2.9E-18 6.2E-23 131.1 9.3 156 99-265 17-180 (182)
190 PRK05306 infB translation init 99.8 1.9E-17 4.1E-22 162.0 16.8 154 97-262 287-450 (787)
191 cd01896 DRG The developmentall 99.8 3.5E-17 7.5E-22 140.2 16.3 148 102-263 2-225 (233)
192 TIGR03594 GTPase_EngA ribosome 99.8 1.7E-17 3.7E-22 154.6 15.1 148 102-266 1-162 (429)
193 COG1159 Era GTPase [General fu 99.7 5E-17 1.1E-21 139.7 16.1 172 98-279 4-187 (298)
194 PRK05433 GTP-binding protein L 99.7 3.4E-17 7.4E-22 157.3 16.0 156 100-265 7-185 (600)
195 KOG0076 GTP-binding ADP-ribosy 99.7 1.6E-18 3.5E-23 136.6 4.8 159 97-266 14-189 (197)
196 cd01876 YihA_EngB The YihA (En 99.7 4.6E-17 9.9E-22 131.1 13.1 150 102-262 1-169 (170)
197 KOG1707 Predicted Ras related/ 99.7 7.6E-18 1.7E-22 154.9 8.9 164 97-265 6-176 (625)
198 cd00880 Era_like Era (E. coli 99.7 7.7E-17 1.7E-21 127.9 13.6 151 105-262 1-162 (163)
199 PRK09554 feoB ferrous iron tra 99.7 1.2E-16 2.6E-21 157.0 17.7 152 99-263 2-167 (772)
200 KOG0074 GTP-binding ADP-ribosy 99.7 2.3E-17 4.9E-22 125.8 9.3 152 98-262 15-177 (185)
201 PRK09518 bifunctional cytidyla 99.7 1.1E-16 2.4E-21 157.4 16.6 154 99-266 274-438 (712)
202 PRK12317 elongation factor 1-a 99.7 4.3E-17 9.4E-22 151.6 12.5 155 98-256 4-197 (425)
203 TIGR00483 EF-1_alpha translati 99.7 3.8E-17 8.2E-22 152.0 12.0 156 97-256 4-199 (426)
204 PRK10218 GTP-binding protein; 99.7 3.5E-16 7.5E-21 149.9 16.3 159 100-265 5-196 (607)
205 TIGR00491 aIF-2 translation in 99.7 3E-16 6.4E-21 149.9 15.4 157 100-262 4-214 (590)
206 PF00009 GTP_EFTU: Elongation 99.7 5.8E-17 1.2E-21 134.4 8.9 158 100-264 3-187 (188)
207 COG2229 Predicted GTPase [Gene 99.7 8.9E-16 1.9E-20 122.7 14.6 155 96-262 6-176 (187)
208 COG1160 Predicted GTPases [Gen 99.7 7.4E-16 1.6E-20 139.4 15.6 147 101-264 4-165 (444)
209 TIGR03680 eif2g_arch translati 99.7 2.5E-16 5.3E-21 145.5 12.4 162 99-264 3-196 (406)
210 cd04167 Snu114p Snu114p subfam 99.7 2.1E-16 4.5E-21 133.7 10.6 149 102-253 2-192 (213)
211 TIGR01394 TypA_BipA GTP-bindin 99.7 4.4E-16 9.6E-21 149.3 13.7 158 102-266 3-193 (594)
212 cd04166 CysN_ATPS CysN_ATPS su 99.7 2.1E-16 4.6E-21 133.2 10.2 149 102-255 1-185 (208)
213 PRK04000 translation initiatio 99.7 8.3E-16 1.8E-20 142.0 13.2 160 97-264 6-201 (411)
214 KOG1423 Ras-like GTPase ERA [C 99.7 1.5E-15 3.3E-20 130.2 13.7 182 93-279 65-286 (379)
215 COG0486 ThdF Predicted GTPase 99.7 1.5E-15 3.2E-20 137.8 14.4 151 100-266 217-378 (454)
216 PRK10512 selenocysteinyl-tRNA- 99.7 1.6E-15 3.4E-20 146.1 15.0 154 102-265 2-167 (614)
217 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 1.8E-15 4E-20 128.4 13.6 169 102-275 1-187 (232)
218 PRK04004 translation initiatio 99.6 2.3E-15 5E-20 144.3 14.6 157 99-261 5-215 (586)
219 cd04168 TetM_like Tet(M)-like 99.6 5.2E-15 1.1E-19 127.0 12.5 111 102-215 1-129 (237)
220 PF10662 PduV-EutP: Ethanolami 99.6 1.3E-14 2.7E-19 113.5 11.1 134 102-260 3-142 (143)
221 COG0370 FeoB Fe2+ transport sy 99.6 1.8E-14 3.8E-19 136.0 13.9 155 100-267 3-167 (653)
222 cd01899 Ygr210 Ygr210 subfamil 99.6 3.4E-14 7.3E-19 126.6 15.0 79 103-181 1-110 (318)
223 cd01883 EF1_alpha Eukaryotic e 99.6 5.8E-15 1.3E-19 125.4 9.2 150 102-253 1-194 (219)
224 cd01884 EF_Tu EF-Tu subfamily. 99.6 3.8E-14 8.1E-19 118.2 13.8 148 100-253 2-172 (195)
225 cd04104 p47_IIGP_like p47 (47- 99.6 3.8E-14 8.3E-19 118.4 13.5 160 100-266 1-186 (197)
226 cd01850 CDC_Septin CDC/Septin. 99.6 2.2E-14 4.9E-19 125.7 12.3 142 100-248 4-186 (276)
227 cd04165 GTPBP1_like GTPBP1-lik 99.6 2.9E-14 6.3E-19 121.3 12.4 153 102-260 1-219 (224)
228 cd01885 EF2 EF2 (for archaea a 99.6 8.3E-14 1.8E-18 118.2 13.5 110 102-214 2-137 (222)
229 TIGR00485 EF-Tu translation el 99.5 7.2E-14 1.6E-18 128.8 13.6 148 97-250 9-179 (394)
230 PRK12735 elongation factor Tu; 99.5 9.8E-14 2.1E-18 127.9 13.7 161 97-263 9-202 (396)
231 COG1084 Predicted GTPase [Gene 99.5 2.1E-13 4.5E-18 118.6 14.5 158 100-267 168-339 (346)
232 PRK12736 elongation factor Tu; 99.5 1.1E-13 2.3E-18 127.6 13.5 162 97-264 9-201 (394)
233 smart00010 small_GTPase Small 99.5 1.3E-14 2.8E-19 111.4 4.4 111 101-253 1-115 (124)
234 PRK09602 translation-associate 99.5 5.8E-13 1.3E-17 122.1 15.1 81 101-181 2-113 (396)
235 PLN00043 elongation factor 1-a 99.5 2.9E-13 6.2E-18 126.2 12.4 154 98-254 5-203 (447)
236 PRK13351 elongation factor G; 99.5 2.1E-13 4.5E-18 134.1 11.9 114 99-215 7-138 (687)
237 cd04169 RF3 RF3 subfamily. Pe 99.5 6.8E-13 1.5E-17 115.8 13.9 111 101-214 3-135 (267)
238 COG0218 Predicted GTPase [Gene 99.5 7.9E-13 1.7E-17 108.1 13.1 153 99-265 23-198 (200)
239 COG1163 DRG Predicted GTPase [ 99.5 1.2E-12 2.7E-17 113.5 14.6 150 101-264 64-289 (365)
240 TIGR02034 CysN sulfate adenyly 99.5 2.5E-13 5.3E-18 125.6 10.6 151 101-254 1-187 (406)
241 PRK05124 cysN sulfate adenylyl 99.5 2.9E-13 6.4E-18 127.1 10.9 155 98-255 25-216 (474)
242 KOG0462 Elongation factor-type 99.4 1.6E-12 3.6E-17 119.3 14.2 161 100-267 60-238 (650)
243 PRK00741 prfC peptide chain re 99.4 1.8E-12 3.9E-17 122.9 14.6 114 99-215 9-144 (526)
244 COG2262 HflX GTPases [General 99.4 4.4E-12 9.5E-17 113.5 15.8 157 100-267 192-359 (411)
245 CHL00071 tufA elongation facto 99.4 1.7E-12 3.6E-17 120.2 13.6 150 97-252 9-181 (409)
246 TIGR00503 prfC peptide chain r 99.4 1.8E-12 3.8E-17 123.1 13.9 113 99-214 10-144 (527)
247 KOG0077 Vesicle coat complex C 99.4 3E-13 6.5E-18 106.2 6.9 159 99-262 19-191 (193)
248 PF09439 SRPRB: Signal recogni 99.4 2.8E-13 6.1E-18 110.5 6.3 114 101-217 4-127 (181)
249 PF05783 DLIC: Dynein light in 99.4 2.9E-12 6.3E-17 119.2 13.9 178 100-279 25-279 (472)
250 cd04170 EF-G_bact Elongation f 99.4 2.5E-12 5.4E-17 112.5 11.9 144 102-257 1-166 (268)
251 KOG3905 Dynein light intermedi 99.4 3.8E-12 8.2E-17 110.3 12.5 170 101-272 53-298 (473)
252 PLN03126 Elongation factor Tu; 99.4 2.1E-12 4.5E-17 121.1 11.9 149 97-251 78-249 (478)
253 PRK05506 bifunctional sulfate 99.4 1.7E-12 3.6E-17 126.4 11.7 153 99-254 23-211 (632)
254 PF01926 MMR_HSR1: 50S ribosom 99.4 8.7E-12 1.9E-16 95.0 12.5 104 102-211 1-116 (116)
255 TIGR00157 ribosome small subun 99.4 3.1E-12 6.6E-17 110.4 11.0 96 158-261 24-120 (245)
256 PRK00049 elongation factor Tu; 99.4 7.6E-12 1.6E-16 115.3 14.2 160 97-262 9-201 (396)
257 KOG1191 Mitochondrial GTPase [ 99.4 4.5E-12 9.7E-17 115.3 10.9 161 99-266 267-452 (531)
258 PTZ00141 elongation factor 1- 99.4 7.9E-12 1.7E-16 116.6 12.8 155 98-254 5-203 (446)
259 cd01886 EF-G Elongation factor 99.4 7.8E-12 1.7E-16 109.3 11.6 110 102-214 1-128 (270)
260 COG0532 InfB Translation initi 99.3 1.4E-11 2.9E-16 113.7 13.6 153 100-263 5-169 (509)
261 COG0481 LepA Membrane GTPase L 99.3 1E-11 2.3E-16 112.4 12.2 157 101-267 10-189 (603)
262 PLN03127 Elongation factor Tu; 99.3 3.6E-11 7.8E-16 112.1 15.3 161 97-263 58-251 (447)
263 KOG0090 Signal recognition par 99.3 1.1E-11 2.4E-16 101.6 10.3 156 102-262 40-237 (238)
264 PRK13768 GTPase; Provisional 99.3 1.1E-11 2.4E-16 107.5 9.7 114 148-264 98-247 (253)
265 PTZ00327 eukaryotic translatio 99.3 2.6E-11 5.7E-16 113.0 11.8 162 98-264 32-233 (460)
266 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 1.6E-10 3.4E-15 96.4 15.1 158 101-265 1-185 (196)
267 COG5256 TEF1 Translation elong 99.3 2.5E-11 5.5E-16 108.7 10.3 159 97-256 4-203 (428)
268 KOG1490 GTP-binding protein CR 99.3 2.7E-11 5.7E-16 110.4 10.3 163 100-267 168-344 (620)
269 KOG3886 GTP-binding protein [S 99.2 1.5E-11 3.2E-16 101.9 7.1 166 100-270 4-184 (295)
270 TIGR00484 EF-G translation elo 99.2 4.7E-11 1E-15 117.4 11.7 110 100-214 10-139 (689)
271 PRK14845 translation initiatio 99.2 9.3E-11 2E-15 117.9 13.8 107 149-261 528-670 (1049)
272 PRK12740 elongation factor G; 99.2 5.2E-11 1.1E-15 116.9 11.0 105 106-215 1-125 (668)
273 TIGR00490 aEF-2 translation el 99.2 6.1E-11 1.3E-15 117.0 10.8 113 99-214 18-150 (720)
274 PRK12739 elongation factor G; 99.2 1.2E-10 2.5E-15 114.6 11.7 111 100-215 8-138 (691)
275 KOG1707 Predicted Ras related/ 99.2 5E-10 1.1E-14 103.9 14.5 163 96-267 421-586 (625)
276 PRK09866 hypothetical protein; 99.2 1E-09 2.2E-14 104.0 16.7 108 148-261 231-350 (741)
277 TIGR00101 ureG urease accessor 99.2 3.6E-10 7.8E-15 94.5 12.1 105 147-264 92-196 (199)
278 PTZ00258 GTP-binding protein; 99.1 8.8E-10 1.9E-14 100.4 14.1 83 99-181 20-126 (390)
279 KOG1145 Mitochondrial translat 99.1 8.4E-10 1.8E-14 101.8 13.5 150 99-263 152-315 (683)
280 COG3596 Predicted GTPase [Gene 99.1 3.1E-10 6.7E-15 96.9 9.9 166 97-266 36-224 (296)
281 cd00066 G-alpha G protein alph 99.1 1.1E-09 2.4E-14 98.0 13.9 121 146-266 160-313 (317)
282 PRK00007 elongation factor G; 99.1 4.3E-10 9.3E-15 110.6 12.1 111 100-215 10-140 (693)
283 PRK09601 GTP-binding protein Y 99.1 2.3E-09 4.9E-14 96.7 14.3 81 101-181 3-107 (364)
284 KOG0705 GTPase-activating prot 99.1 5.2E-10 1.1E-14 102.9 9.3 165 93-267 23-192 (749)
285 COG2895 CysN GTPases - Sulfate 99.1 1.1E-09 2.4E-14 96.1 10.7 153 99-254 5-193 (431)
286 COG1217 TypA Predicted membran 99.0 4.2E-09 9.1E-14 95.5 13.4 160 101-267 6-198 (603)
287 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2.2E-09 4.8E-14 94.5 11.0 115 97-214 35-165 (313)
288 COG4917 EutP Ethanolamine util 99.0 1.1E-09 2.4E-14 82.4 7.5 135 102-261 3-143 (148)
289 cd01853 Toc34_like Toc34-like 99.0 1.3E-08 2.8E-13 88.0 12.9 115 97-214 28-161 (249)
290 PRK09435 membrane ATPase/prote 98.9 7.1E-09 1.5E-13 92.8 11.0 106 146-264 148-260 (332)
291 cd01900 YchF YchF subfamily. 98.9 7.1E-09 1.5E-13 90.5 9.7 79 103-181 1-103 (274)
292 PRK07560 elongation factor EF- 98.9 1.1E-08 2.4E-13 101.4 12.1 112 100-214 20-151 (731)
293 TIGR00073 hypB hydrogenase acc 98.9 2.2E-08 4.7E-13 84.3 12.0 101 147-262 103-205 (207)
294 cd01855 YqeH YqeH. YqeH is an 98.9 5.5E-09 1.2E-13 86.6 8.3 94 160-264 24-125 (190)
295 KOG1144 Translation initiation 98.9 8E-09 1.7E-13 98.1 10.0 159 95-263 470-686 (1064)
296 cd01882 BMS1 Bms1. Bms1 is an 98.9 2.4E-08 5.1E-13 85.2 11.8 137 100-250 39-182 (225)
297 PF04548 AIG1: AIG1 family; I 98.9 4.2E-08 9.1E-13 82.9 12.0 160 101-267 1-189 (212)
298 COG0012 Predicted GTPase, prob 98.8 7.9E-08 1.7E-12 85.8 14.1 82 100-181 2-108 (372)
299 KOG1486 GTP-binding protein DR 98.8 9.6E-08 2.1E-12 80.6 13.5 151 100-264 62-288 (364)
300 TIGR03597 GTPase_YqeH ribosome 98.8 1.1E-08 2.3E-13 93.3 7.5 98 157-262 50-151 (360)
301 PLN00116 translation elongatio 98.8 1.8E-08 3.9E-13 101.1 8.6 112 100-214 19-162 (843)
302 PTZ00416 elongation factor 2; 98.8 2.1E-08 4.6E-13 100.4 9.1 112 100-214 19-156 (836)
303 PRK12289 GTPase RsgA; Reviewed 98.7 6E-08 1.3E-12 87.7 10.2 92 161-261 80-172 (352)
304 PF03029 ATP_bind_1: Conserved 98.7 3.7E-09 8E-14 90.7 2.3 113 148-263 92-236 (238)
305 PRK00098 GTPase RsgA; Reviewed 98.7 5.2E-08 1.1E-12 86.5 9.6 86 167-260 77-163 (298)
306 KOG0458 Elongation factor 1 al 98.7 1.7E-07 3.6E-12 87.4 12.8 156 97-255 174-373 (603)
307 TIGR00750 lao LAO/AO transport 98.7 1.5E-07 3.4E-12 83.6 12.0 105 146-263 126-237 (300)
308 PF00735 Septin: Septin; Inte 98.7 1.9E-07 4.2E-12 82.0 11.9 140 100-245 4-182 (281)
309 COG5257 GCD11 Translation init 98.7 5.4E-08 1.2E-12 84.7 8.0 165 99-267 9-205 (415)
310 cd01854 YjeQ_engC YjeQ/EngC. 98.7 1.1E-07 2.5E-12 83.9 9.8 88 165-261 73-161 (287)
311 KOG0461 Selenocysteine-specifi 98.7 4.5E-07 9.8E-12 79.8 13.1 159 99-267 6-196 (522)
312 cd01859 MJ1464 MJ1464. This f 98.7 7.8E-08 1.7E-12 77.1 7.8 95 161-265 3-97 (156)
313 TIGR00993 3a0901s04IAP86 chlor 98.6 9E-07 2E-11 84.6 15.0 181 7-214 48-248 (763)
314 TIGR02836 spore_IV_A stage IV 98.6 1.4E-06 2.9E-11 79.3 15.5 154 100-262 17-235 (492)
315 PF00350 Dynamin_N: Dynamin fa 98.6 2.5E-07 5.4E-12 74.8 9.8 62 149-212 103-168 (168)
316 PRK12288 GTPase RsgA; Reviewed 98.6 2.9E-07 6.2E-12 83.3 10.6 88 168-261 118-205 (347)
317 smart00275 G_alpha G protein a 98.6 7.3E-07 1.6E-11 80.6 13.0 134 129-266 170-336 (342)
318 COG3276 SelB Selenocysteine-sp 98.6 3.7E-07 7.9E-12 82.9 10.7 151 103-264 3-162 (447)
319 COG0378 HypB Ni2+-binding GTPa 98.6 5.5E-07 1.2E-11 73.5 10.2 79 171-263 118-200 (202)
320 KOG1532 GTPase XAB1, interacts 98.6 5.2E-07 1.1E-11 77.2 9.7 117 146-264 115-264 (366)
321 KOG0082 G-protein alpha subuni 98.6 8E-07 1.7E-11 79.5 11.4 122 146-267 194-347 (354)
322 KOG0468 U5 snRNP-specific prot 98.5 8.7E-07 1.9E-11 83.7 10.2 115 97-214 125-261 (971)
323 PF05049 IIGP: Interferon-indu 98.5 1.3E-06 2.9E-11 79.0 10.6 161 99-266 34-220 (376)
324 KOG3887 Predicted small GTPase 98.4 1.1E-06 2.4E-11 73.8 8.3 168 101-273 28-211 (347)
325 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.2E-06 2.5E-11 70.4 8.2 88 167-263 5-94 (157)
326 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 5.1E-07 1.1E-11 71.2 5.9 53 102-157 85-138 (141)
327 KOG0410 Predicted GTP binding 98.4 5E-07 1.1E-11 78.9 6.1 149 101-265 179-342 (410)
328 COG0480 FusA Translation elong 98.4 1.7E-06 3.8E-11 84.4 9.5 113 99-214 9-140 (697)
329 COG5258 GTPBP1 GTPase [General 98.4 1E-05 2.2E-10 72.4 13.0 161 97-264 114-338 (527)
330 PRK13796 GTPase YqeH; Provisio 98.3 3E-06 6.4E-11 77.4 10.0 87 169-263 67-158 (365)
331 smart00053 DYNc Dynamin, GTPas 98.3 6.5E-06 1.4E-10 70.6 11.1 66 147-214 125-204 (240)
332 KOG4273 Uncharacterized conser 98.3 6.9E-06 1.5E-10 69.4 10.8 161 102-265 6-223 (418)
333 PRK10463 hydrogenase nickel in 98.3 3.9E-06 8.3E-11 73.6 9.1 54 204-262 232-287 (290)
334 cd01849 YlqF_related_GTPase Yl 98.3 4.5E-06 9.7E-11 66.8 8.8 84 172-263 1-84 (155)
335 cd01859 MJ1464 MJ1464. This f 98.2 2.9E-06 6.3E-11 67.9 6.2 54 100-156 101-155 (156)
336 cd01856 YlqF YlqF. Proteins o 98.2 3.2E-06 6.9E-11 68.9 6.3 56 99-157 114-170 (171)
337 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 6.4E-06 1.4E-10 64.9 7.3 77 165-251 6-84 (141)
338 cd04178 Nucleostemin_like Nucl 98.1 4.7E-06 1E-10 68.0 6.0 53 99-156 116-171 (172)
339 COG4108 PrfC Peptide chain rel 98.1 3.1E-05 6.7E-10 70.4 11.5 132 99-240 11-164 (528)
340 cd01858 NGP_1 NGP-1. Autoanti 98.1 5.8E-06 1.3E-10 66.3 6.3 52 100-156 102-156 (157)
341 COG0050 TufB GTPases - transla 98.1 1.9E-05 4.2E-10 68.3 9.2 142 97-247 9-176 (394)
342 cd01856 YlqF YlqF. Proteins o 98.1 5.9E-06 1.3E-10 67.3 5.9 90 163-264 12-101 (171)
343 KOG1547 Septin CDC10 and relat 98.1 3.8E-05 8.3E-10 64.7 10.5 156 99-261 45-240 (336)
344 TIGR00092 GTP-binding protein 98.1 2.2E-05 4.8E-10 71.1 9.9 81 101-181 3-108 (368)
345 COG5019 CDC3 Septin family pro 98.1 4.9E-05 1.1E-09 67.9 11.5 138 99-243 22-200 (373)
346 KOG2486 Predicted GTPase [Gene 98.1 1.6E-05 3.4E-10 68.4 7.8 157 97-262 133-314 (320)
347 KOG1143 Predicted translation 98.1 5.6E-05 1.2E-09 67.5 11.5 115 97-214 164-315 (591)
348 KOG2655 Septin family protein 98.0 8.4E-05 1.8E-09 66.7 12.5 142 100-247 21-200 (366)
349 TIGR03596 GTPase_YlqF ribosome 98.0 1E-05 2.2E-10 71.2 6.4 149 1-157 8-173 (276)
350 PF03308 ArgK: ArgK protein; 98.0 1.4E-05 3.1E-10 68.4 6.6 100 147-262 122-228 (266)
351 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.6E-05 3.5E-10 70.3 7.0 151 1-158 11-177 (287)
352 COG1703 ArgK Putative periplas 98.0 6.9E-05 1.5E-09 65.3 10.3 104 147-264 144-254 (323)
353 KOG1491 Predicted GTP-binding 97.9 3.3E-05 7.2E-10 68.1 7.6 83 99-181 19-125 (391)
354 TIGR03596 GTPase_YlqF ribosome 97.9 4.7E-05 1E-09 66.9 8.5 90 164-265 15-104 (276)
355 COG1161 Predicted GTPases [Gen 97.9 2.2E-05 4.7E-10 70.5 6.0 58 98-158 130-188 (322)
356 KOG1954 Endocytosis/signaling 97.9 5.2E-05 1.1E-09 67.6 7.7 110 101-214 59-223 (532)
357 TIGR00064 ftsY signal recognit 97.8 6E-05 1.3E-09 66.1 7.6 96 146-257 154-261 (272)
358 TIGR03348 VI_IcmF type VI secr 97.8 0.0001 2.2E-09 76.9 10.3 108 103-214 114-255 (1169)
359 PRK09563 rbgA GTPase YlqF; Rev 97.8 0.00011 2.5E-09 64.9 8.6 90 164-265 18-107 (287)
360 KOG1487 GTP-binding protein DR 97.8 0.00014 3.1E-09 62.0 8.5 84 101-186 60-152 (358)
361 PRK10416 signal recognition pa 97.8 0.00019 4.2E-09 64.3 10.0 94 146-256 196-302 (318)
362 cd01855 YqeH YqeH. YqeH is an 97.8 3.7E-05 7.9E-10 63.6 5.0 52 100-156 127-189 (190)
363 KOG0467 Translation elongation 97.7 0.00012 2.6E-09 70.6 8.0 107 100-213 9-135 (887)
364 cd01851 GBP Guanylate-binding 97.7 0.00016 3.4E-09 61.6 8.1 84 100-184 7-105 (224)
365 KOG0466 Translation initiation 97.7 4.1E-05 8.9E-10 66.6 4.4 116 148-267 126-244 (466)
366 KOG0448 Mitofusin 1 GTPase, in 97.7 0.00048 1E-08 65.9 11.8 113 98-214 107-273 (749)
367 PRK01889 GTPase RsgA; Reviewed 97.7 0.00026 5.7E-09 64.5 9.9 84 168-260 110-193 (356)
368 cd01849 YlqF_related_GTPase Yl 97.6 0.00011 2.5E-09 58.6 6.0 53 99-156 99-154 (155)
369 COG1618 Predicted nucleotide k 97.6 0.0023 5E-08 51.0 13.0 55 99-155 4-59 (179)
370 PRK14974 cell division protein 97.6 0.00023 4.9E-09 64.1 8.2 94 147-257 223-323 (336)
371 KOG3929 Uncharacterized conser 97.6 2.9E-05 6.4E-10 66.0 1.5 171 97-269 42-257 (363)
372 KOG0463 GTP-binding protein GP 97.5 0.0012 2.6E-08 59.2 11.1 30 95-124 128-158 (641)
373 TIGR01425 SRP54_euk signal rec 97.5 0.00099 2.1E-08 61.8 10.8 93 146-254 182-280 (429)
374 COG1162 Predicted GTPases [Gen 97.5 0.0011 2.4E-08 58.2 10.2 93 162-261 71-164 (301)
375 PRK13695 putative NTPase; Prov 97.5 0.003 6.6E-08 51.4 12.2 20 101-120 1-21 (174)
376 PF00503 G-alpha: G-protein al 97.4 0.00084 1.8E-08 62.0 9.7 118 146-263 235-389 (389)
377 PF06858 NOG1: Nucleolar GTP-b 97.4 0.0007 1.5E-08 44.2 5.9 44 170-213 13-58 (58)
378 cd02038 FleN-like FleN is a me 97.4 0.00086 1.9E-08 52.6 7.6 103 105-213 5-108 (139)
379 KOG0460 Mitochondrial translat 97.4 0.0013 2.8E-08 58.3 9.1 148 97-249 51-223 (449)
380 cd03112 CobW_like The function 97.3 0.00071 1.5E-08 54.3 6.9 64 146-214 86-158 (158)
381 PRK12289 GTPase RsgA; Reviewed 97.3 0.00036 7.9E-09 63.3 5.6 54 103-159 175-236 (352)
382 PRK12288 GTPase RsgA; Reviewed 97.3 0.00028 6E-09 64.0 4.8 56 103-161 208-271 (347)
383 COG5192 BMS1 GTP-binding prote 97.3 0.0016 3.4E-08 61.3 9.4 139 98-248 67-210 (1077)
384 PRK00771 signal recognition pa 97.3 0.0014 3E-08 61.2 8.8 91 147-254 176-273 (437)
385 PRK14722 flhF flagellar biosyn 97.2 0.0026 5.6E-08 58.1 10.0 92 146-246 215-316 (374)
386 PF03193 DUF258: Protein of un 97.2 0.0003 6.6E-09 56.5 3.5 56 102-160 37-100 (161)
387 TIGR00157 ribosome small subun 97.2 0.00065 1.4E-08 58.7 5.3 55 102-160 122-184 (245)
388 PRK12727 flagellar biosynthesi 97.2 0.0037 8.1E-08 59.3 10.6 91 146-252 428-523 (559)
389 cd03115 SRP The signal recogni 97.1 0.0015 3.3E-08 53.0 6.9 84 146-243 82-171 (173)
390 PRK13796 GTPase YqeH; Provisio 97.1 0.00067 1.5E-08 62.1 5.2 53 101-158 161-221 (365)
391 TIGR03597 GTPase_YqeH ribosome 97.1 0.00085 1.8E-08 61.3 5.8 54 101-159 155-216 (360)
392 cd02042 ParA ParA and ParB of 97.1 0.0019 4E-08 47.7 6.5 81 103-194 2-84 (104)
393 PF00448 SRP54: SRP54-type pro 97.1 0.0016 3.4E-08 54.3 6.4 91 147-254 84-181 (196)
394 KOG0085 G protein subunit Galp 97.0 0.0013 2.8E-08 55.4 5.2 67 201-267 265-352 (359)
395 KOG1424 Predicted GTP-binding 97.0 0.00094 2E-08 62.1 4.6 56 100-158 314-370 (562)
396 COG1419 FlhF Flagellar GTP-bin 97.0 0.011 2.3E-07 54.1 11.2 151 100-267 203-397 (407)
397 TIGR00959 ffh signal recogniti 96.9 0.0033 7.1E-08 58.6 8.0 93 146-255 182-281 (428)
398 PRK10867 signal recognition pa 96.9 0.0028 6.2E-08 59.0 7.5 92 146-254 183-281 (433)
399 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.00098 2.1E-08 58.9 4.1 57 101-160 162-226 (287)
400 PRK11889 flhF flagellar biosyn 96.9 0.0039 8.4E-08 57.2 7.8 86 147-246 321-412 (436)
401 PRK14721 flhF flagellar biosyn 96.9 0.007 1.5E-07 56.2 9.4 103 147-265 270-383 (420)
402 cd02036 MinD Bacterial cell di 96.8 0.0095 2.1E-07 48.2 9.1 84 148-242 64-147 (179)
403 COG3523 IcmF Type VI protein s 96.8 0.0028 6.1E-08 65.2 6.8 109 103-214 128-268 (1188)
404 PRK14723 flhF flagellar biosyn 96.8 0.0074 1.6E-07 59.8 9.3 105 147-265 264-380 (767)
405 PRK00098 GTPase RsgA; Reviewed 96.8 0.0026 5.6E-08 56.6 5.7 23 101-123 165-188 (298)
406 cd03114 ArgK-like The function 96.7 0.0068 1.5E-07 48.1 7.2 58 146-213 91-148 (148)
407 PRK06995 flhF flagellar biosyn 96.7 0.011 2.4E-07 55.7 9.8 104 147-266 335-449 (484)
408 PRK05703 flhF flagellar biosyn 96.7 0.022 4.7E-07 53.2 11.6 104 147-266 300-415 (424)
409 COG1162 Predicted GTPases [Gen 96.7 0.003 6.5E-08 55.6 5.0 57 102-161 166-230 (301)
410 KOG0464 Elongation factor G [T 96.6 0.0025 5.4E-08 57.9 4.4 131 101-241 38-186 (753)
411 KOG0447 Dynamin-like GTP bindi 96.6 0.029 6.2E-07 53.0 11.4 64 148-214 413-491 (980)
412 cd01983 Fer4_NifH The Fer4_Nif 96.6 0.015 3.2E-07 41.5 7.7 68 103-183 2-71 (99)
413 PRK12724 flagellar biosynthesi 96.5 0.015 3.2E-07 53.8 9.0 132 101-246 224-394 (432)
414 PF11111 CENP-M: Centromere pr 96.5 0.07 1.5E-06 43.1 11.6 145 92-263 7-152 (176)
415 KOG3859 Septins (P-loop GTPase 96.5 0.0043 9.3E-08 53.7 4.9 58 99-156 41-104 (406)
416 cd03111 CpaE_like This protein 96.5 0.0077 1.7E-07 44.9 5.7 96 107-211 7-106 (106)
417 PF03266 NTPase_1: NTPase; In 96.4 0.005 1.1E-07 50.0 4.7 21 102-122 1-22 (168)
418 KOG0469 Elongation factor 2 [T 96.4 0.0089 1.9E-07 55.7 6.6 110 101-213 20-161 (842)
419 PF09547 Spore_IV_A: Stage IV 96.3 0.3 6.5E-06 45.2 15.8 153 100-261 17-234 (492)
420 PRK12726 flagellar biosynthesi 96.2 0.022 4.7E-07 52.1 7.8 92 146-253 285-382 (407)
421 PRK08118 topology modulation p 96.1 0.0038 8.1E-08 50.6 2.4 20 102-121 3-23 (167)
422 cd03110 Fer4_NifH_child This p 96.1 0.047 1E-06 44.4 8.8 86 145-243 91-176 (179)
423 COG0563 Adk Adenylate kinase a 96.0 0.004 8.7E-08 51.0 2.3 22 101-122 1-23 (178)
424 PF13207 AAA_17: AAA domain; P 96.0 0.0046 9.9E-08 46.8 2.3 20 102-121 1-21 (121)
425 KOG0459 Polypeptide release fa 96.0 0.019 4.2E-07 52.2 6.5 161 97-257 76-279 (501)
426 PRK14738 gmk guanylate kinase; 96.0 0.0078 1.7E-07 50.5 3.8 27 96-122 9-36 (206)
427 cd04178 Nucleostemin_like Nucl 96.0 0.022 4.9E-07 46.3 6.3 42 172-214 1-42 (172)
428 PRK07261 topology modulation p 95.9 0.0054 1.2E-07 49.9 2.6 20 102-121 2-22 (171)
429 PRK06731 flhF flagellar biosyn 95.9 0.086 1.9E-06 46.2 10.1 92 146-253 154-251 (270)
430 PF13671 AAA_33: AAA domain; P 95.9 0.0051 1.1E-07 47.9 2.3 18 103-120 2-20 (143)
431 COG3640 CooC CO dehydrogenase 95.8 0.064 1.4E-06 45.5 8.5 46 166-213 151-196 (255)
432 PRK12723 flagellar biosynthesi 95.8 0.11 2.3E-06 48.0 10.7 91 146-252 254-351 (388)
433 COG1116 TauB ABC-type nitrate/ 95.8 0.0063 1.4E-07 52.0 2.4 20 103-122 32-51 (248)
434 COG1126 GlnQ ABC-type polar am 95.8 0.0071 1.5E-07 50.7 2.6 39 227-265 145-185 (240)
435 cd00009 AAA The AAA+ (ATPases 95.8 0.032 6.9E-07 42.7 6.3 22 101-122 20-42 (151)
436 PF13521 AAA_28: AAA domain; P 95.7 0.0059 1.3E-07 49.0 2.0 21 102-122 1-22 (163)
437 KOG2484 GTPase [General functi 95.7 0.0086 1.9E-07 54.3 3.0 57 98-157 250-307 (435)
438 cd02037 MRP-like MRP (Multiple 95.6 0.074 1.6E-06 42.9 8.1 93 145-242 66-162 (169)
439 KOG0099 G protein subunit Galp 95.6 0.11 2.4E-06 44.8 9.2 70 145-214 200-281 (379)
440 KOG0465 Mitochondrial elongati 95.6 0.018 3.8E-07 54.9 4.8 109 102-213 41-167 (721)
441 PF13555 AAA_29: P-loop contai 95.5 0.011 2.4E-07 39.5 2.4 19 102-120 25-44 (62)
442 COG0523 Putative GTPases (G3E 95.5 0.27 5.9E-06 44.2 11.9 97 147-256 85-193 (323)
443 PRK08099 bifunctional DNA-bind 95.4 0.031 6.8E-07 51.7 5.6 23 100-122 219-242 (399)
444 KOG2485 Conserved ATP/GTP bind 95.3 0.03 6.4E-07 49.4 4.9 57 99-157 142-206 (335)
445 PRK14737 gmk guanylate kinase; 95.3 0.014 3E-07 48.2 2.7 22 102-123 6-28 (186)
446 smart00382 AAA ATPases associa 95.2 0.015 3.2E-07 44.2 2.7 25 101-125 3-28 (148)
447 PRK11537 putative GTP-binding 95.2 0.26 5.6E-06 44.3 10.9 20 103-122 7-27 (318)
448 PRK06217 hypothetical protein; 95.2 0.014 3E-07 47.9 2.6 21 101-121 2-23 (183)
449 PF03205 MobB: Molybdopterin g 95.1 0.013 2.8E-07 46.1 2.1 21 102-122 2-23 (140)
450 COG1161 Predicted GTPases [Gen 95.1 0.031 6.8E-07 50.2 4.8 92 155-257 18-110 (322)
451 PF00005 ABC_tran: ABC transpo 95.1 0.016 3.5E-07 44.8 2.6 21 102-122 13-34 (137)
452 PF04665 Pox_A32: Poxvirus A32 95.1 0.015 3.3E-07 49.8 2.5 23 100-122 13-36 (241)
453 KOG0780 Signal recognition par 95.1 0.054 1.2E-06 49.2 6.0 84 102-185 103-228 (483)
454 PF00004 AAA: ATPase family as 95.0 0.016 3.4E-07 44.2 2.3 19 103-121 1-20 (132)
455 COG0194 Gmk Guanylate kinase [ 95.0 0.014 3E-07 47.8 1.9 23 101-123 5-28 (191)
456 cd02019 NK Nucleoside/nucleoti 95.0 0.019 4E-07 39.2 2.2 19 103-121 2-21 (69)
457 KOG0066 eIF2-interacting prote 94.9 0.096 2.1E-06 48.5 7.3 53 148-201 699-752 (807)
458 COG1136 SalX ABC-type antimicr 94.9 0.018 3.9E-07 48.8 2.4 20 102-121 33-52 (226)
459 PF07728 AAA_5: AAA domain (dy 94.8 0.019 4.1E-07 44.6 2.2 19 102-120 1-20 (139)
460 PF13238 AAA_18: AAA domain; P 94.8 0.02 4.3E-07 43.4 2.3 20 103-122 1-21 (129)
461 PRK14530 adenylate kinase; Pro 94.7 0.02 4.4E-07 48.2 2.3 20 101-120 4-24 (215)
462 cd00071 GMPK Guanosine monopho 94.7 0.023 5E-07 44.4 2.4 20 103-122 2-22 (137)
463 PRK03839 putative kinase; Prov 94.7 0.022 4.8E-07 46.5 2.4 20 102-121 2-22 (180)
464 COG4615 PvdE ABC-type sideroph 94.7 0.022 4.7E-07 52.0 2.4 93 92-198 337-433 (546)
465 PRK10078 ribose 1,5-bisphospho 94.6 0.024 5.3E-07 46.6 2.5 20 102-121 4-24 (186)
466 TIGR03263 guanyl_kin guanylate 94.6 0.025 5.5E-07 46.0 2.5 21 102-122 3-24 (180)
467 TIGR00150 HI0065_YjeE ATPase, 94.5 0.063 1.4E-06 41.7 4.5 21 102-122 24-45 (133)
468 PF05729 NACHT: NACHT domain 94.5 0.024 5.3E-07 44.9 2.3 20 103-122 3-23 (166)
469 TIGR02322 phosphon_PhnN phosph 94.5 0.025 5.4E-07 46.0 2.3 21 102-122 3-24 (179)
470 COG0541 Ffh Signal recognition 94.5 0.073 1.6E-06 49.1 5.4 86 99-184 99-226 (451)
471 cd00820 PEPCK_HprK Phosphoenol 94.5 0.029 6.3E-07 41.9 2.3 19 102-120 17-36 (107)
472 PRK14532 adenylate kinase; Pro 94.4 0.027 5.8E-07 46.3 2.4 20 102-121 2-22 (188)
473 PRK08233 hypothetical protein; 94.4 0.032 6.9E-07 45.3 2.7 21 101-121 4-25 (182)
474 TIGR01360 aden_kin_iso1 adenyl 94.4 0.028 6.1E-07 45.9 2.4 19 102-120 5-24 (188)
475 PRK13949 shikimate kinase; Pro 94.4 0.03 6.4E-07 45.5 2.4 19 102-120 3-22 (169)
476 PF13401 AAA_22: AAA domain; P 94.3 0.027 5.7E-07 43.1 2.0 22 102-123 6-28 (131)
477 PF13191 AAA_16: AAA ATPase do 94.3 0.028 6.2E-07 45.5 2.1 21 101-121 25-46 (185)
478 COG1120 FepC ABC-type cobalami 94.2 0.032 6.9E-07 48.3 2.4 19 103-121 31-50 (258)
479 KOG2423 Nucleolar GTPase [Gene 94.2 0.018 3.9E-07 52.3 0.9 58 96-156 303-361 (572)
480 PLN02165 adenylate isopentenyl 94.2 0.069 1.5E-06 48.0 4.6 21 101-121 44-65 (334)
481 PRK02496 adk adenylate kinase; 94.2 0.039 8.4E-07 45.2 2.7 20 101-120 2-22 (184)
482 COG3638 ABC-type phosphate/pho 94.1 0.035 7.6E-07 47.2 2.4 21 102-122 32-52 (258)
483 PRK10751 molybdopterin-guanine 94.1 0.035 7.5E-07 45.2 2.3 22 101-122 7-29 (173)
484 PRK14531 adenylate kinase; Pro 94.1 0.038 8.3E-07 45.3 2.6 22 100-121 2-24 (183)
485 PHA00729 NTP-binding motif con 94.1 0.039 8.5E-07 46.8 2.6 22 101-122 18-40 (226)
486 PRK14269 phosphate ABC transpo 94.1 0.087 1.9E-06 45.3 4.9 20 102-121 30-50 (246)
487 PTZ00088 adenylate kinase 1; P 94.0 0.036 7.8E-07 47.3 2.4 22 100-121 6-28 (229)
488 KOG1424 Predicted GTP-binding 94.0 0.11 2.5E-06 48.7 5.7 74 167-248 171-244 (562)
489 PF03215 Rad17: Rad17 cell cyc 94.0 0.39 8.5E-06 46.0 9.5 90 172-263 133-229 (519)
490 cd01428 ADK Adenylate kinase ( 94.0 0.032 7E-07 45.8 2.0 20 102-121 1-21 (194)
491 PF07015 VirC1: VirC1 protein; 94.0 0.41 8.8E-06 40.7 8.6 101 147-257 84-187 (231)
492 TIGR00235 udk uridine kinase. 94.0 0.051 1.1E-06 45.5 3.1 22 100-121 6-28 (207)
493 PRK00300 gmk guanylate kinase; 93.9 0.039 8.3E-07 45.9 2.3 22 101-122 6-28 (205)
494 COG3839 MalK ABC-type sugar tr 93.9 0.039 8.5E-07 49.7 2.5 19 103-121 32-51 (338)
495 TIGR01351 adk adenylate kinase 93.9 0.037 8E-07 46.5 2.2 20 102-121 1-21 (210)
496 COG1117 PstB ABC-type phosphat 93.9 0.038 8.1E-07 46.4 2.1 19 103-121 36-54 (253)
497 PF13173 AAA_14: AAA domain 93.8 0.039 8.4E-07 42.4 2.0 23 102-124 4-27 (128)
498 TIGR01359 UMP_CMP_kin_fam UMP- 93.8 0.044 9.5E-07 44.7 2.4 19 103-121 2-21 (183)
499 PF13479 AAA_24: AAA domain 93.7 0.048 1E-06 45.9 2.6 20 100-119 3-23 (213)
500 PLN03025 replication factor C 93.7 0.33 7.2E-06 43.5 8.1 21 102-122 36-57 (319)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-41 Score=272.26 Aligned_cols=166 Identities=22% Similarity=0.408 Sum_probs=153.5
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
-.+.+||+++|+.|||||+|+ ||..+.|. .+..|+|+||..+++.++|+.++++||||+||++|+.+..+||++|++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 356899999999999999999 99999999 5666999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v 252 (283)
|+|||+++++||+++..|+++++++.... +++|||||+|| .+.+.+..+++++|+..++++ ++|+|||++.||
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl-----~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDL-----TEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeecccc-----HhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 99999999999999999999999997766 66899999997 344556689999999999999 999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
+++|..|...+....
T Consensus 161 e~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRK 175 (205)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887654
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-41 Score=268.78 Aligned_cols=168 Identities=29% Similarity=0.434 Sum_probs=154.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|+.+||||||+ ||+.+.|.+ ..+|+|..|..+++.+++..++|.||||+|||+|.++.++||++|+++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 35799999999999999999 999999995 4679999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++.+||..++.|++++.+..+...+| |||||+|| .+.+.+..+++..+|+..|..|||+|||+|.||++
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL-----~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~ 157 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADL-----LERREVEFEEAQAYAESQGLLFFETSAKTGENVNE 157 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhh-----hhcccccHHHHHHHHHhcCCEEEEEecccccCHHH
Confidence 9999999999999999999999987754555 89999997 23466779999999999999999999999999999
Q ss_pred HHHHHHHHHhCCcccc
Q 023335 255 IFKFIMAKLFNLPWTV 270 (283)
Q Consensus 255 lf~~l~~~i~~~~~~~ 270 (283)
+|..|.+.+.......
T Consensus 158 if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 158 IFQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHHhccCccccc
Confidence 9999999998876543
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-39 Score=265.15 Aligned_cols=167 Identities=22% Similarity=0.412 Sum_probs=155.2
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
.....+||+++|+++||||+|+ +|..+.|. .+..|.|++|..+++.+++..+.+++|||+||++|..+...||++|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 4556899999999999999999 99999999 666699999999999999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
+++|||+++..||+++..|+..|.++.+..++ +|||||+|+ ...+.+..+.++++|.++|+.|+|+||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~-----~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL-----EEKRQVSKERGEALAREYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc-----cccccccHHHHHHHHHHhCCeEEEccccCCCCH
Confidence 99999999999999999999999999875555 799999997 235666799999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
++.|..|++.+.++.
T Consensus 163 ~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 163 EEAFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999998654
No 4
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-39 Score=251.95 Aligned_cols=171 Identities=25% Similarity=0.420 Sum_probs=155.8
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||++||++|||||||+ +|+.+.|....+ |+|+||..+.+.++|.++++.||||+|||+|+.+.+.||++|.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 345799999999999999999 999999996666 699999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCCC--CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
|+|||++.+++|.++..|++++..|..+ .+.++||||+|. +.++.+..+++.+||+++++-|+|+||++.+||
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk-----es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK-----ESERVVDREEGLKFARKHRCLFIECSAKTRENV 162 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc-----hhcccccHHHHHHHHHhhCcEEEEcchhhhccH
Confidence 9999999999999999999999999654 334799999994 234666799999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcccccc
Q 023335 253 NKIFKFIMAKLFNLPWTVKR 272 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~~~~~ 272 (283)
+..|+.++..|++.|.--+.
T Consensus 163 ~~~FeelveKIi~tp~l~~~ 182 (209)
T KOG0080|consen 163 QCCFEELVEKIIETPSLWEE 182 (209)
T ss_pred HHHHHHHHHHHhcCcchhhc
Confidence 99999999999999854443
No 5
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.9e-39 Score=257.30 Aligned_cols=168 Identities=23% Similarity=0.447 Sum_probs=152.7
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
....+.+||+++|+.+||||||| ||+.+.|. .+.+|+|+||..+++.+.+..+.|++|||+|||+|+.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 34455699999999999999999 99999999 56669999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCCC-ce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTA-IP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
++|+|||++|..||++..+|++.++..+... ++ +|||||.|| .+.+++..+++...|+++++.|+++||+.|.
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL-----~dkrqvs~eEg~~kAkel~a~f~etsak~g~ 171 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDL-----SDKRQVSIEEGERKAKELNAEFIETSAKAGE 171 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccc-----cchhhhhHHHHHHHHHHhCcEEEEecccCCC
Confidence 9999999999999999999999999886653 44 599999997 2335667889999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCc
Q 023335 251 NVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~ 267 (283)
||+++|..|...+....
T Consensus 172 NVk~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 172 NVKQLFRRIAAALPGME 188 (221)
T ss_pred CHHHHHHHHHHhccCcc
Confidence 99999999998887764
No 6
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-39 Score=256.64 Aligned_cols=165 Identities=20% Similarity=0.368 Sum_probs=152.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+|++++|+.|||||+|+ +|+.+.|... ..|.|+++..+.+.+++++++++||||+|++.|+++.+.||++|.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35799999999999999999 9999999944 459999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
||||+++++||..+..|+.+++++. ++..++|+|||+|| +..+.+..+|++.||+++|+.++|+||++++||+|
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL-----~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEE 158 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDL-----EARREVSKEEGEAFAREHGLIFMETSAKTAENVEE 158 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhh-----hccccccHHHHHHHHHHcCceeehhhhhhhhhHHH
Confidence 9999999999999999999999995 66666899999997 34556779999999999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|..+...++.+-
T Consensus 159 aF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 159 AFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887654
No 7
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=100.00 E-value=2.7e-38 Score=243.27 Aligned_cols=191 Identities=61% Similarity=1.020 Sum_probs=183.5
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc
Q 023335 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 170 (283)
Q Consensus 93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 170 (283)
...++...+||-++|++.+|||||+ +|+++++. ++..+.|+++..+++.+.+..+.+.|||.+|++++..+.+..+++
T Consensus 13 ~a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 13 PAVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred cccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 3346778999999999999999999 99999998 566699999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
+-+++|+||++.+++++.+..||.+.+..+...+||+||+|.|++..++++.++.+..+++.+|+.++++.|++|+..+.
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCccccccccCCCCCCCCC
Q 023335 251 NVNKIFKFIMAKLFNLPWTVKRNLTIGEPIIDF 283 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~~~~~~~~~~~~~i~d~ 283 (283)
||+++|+.+...+++.+|+++++...|+||+||
T Consensus 173 Nv~KIFK~vlAklFnL~~ti~~~~~iGdPildy 205 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLPWTIPEILTIGDPILDY 205 (205)
T ss_pred cHHHHHHHHHHHHhCCceecccccccCcccccC
Confidence 999999999999999999999999999999998
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=243.18 Aligned_cols=164 Identities=25% Similarity=0.477 Sum_probs=152.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+|.+|+|++|||||||+ +|..+.|. ++..|+|+|+..+++.++|..++++|||++|+|+|+.+...||+..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 3578999999999999999 99999999 555699999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|||+++.+||.++.+|+++++..++..|-|+||||.|+ ++++.+..++++.||..+|+.+||+|||.++|++..|
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~-----~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF 161 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDD-----PERRVVDTEDARAFALQMGIELFETSAKENENVEAMF 161 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCccccceecccCCCC-----ccceeeehHHHHHHHHhcCchheehhhhhcccchHHH
Confidence 99999999999999999999999987777999999996 3455566999999999999999999999999999999
Q ss_pred HHHHHHHhCCc
Q 023335 257 KFIMAKLFNLP 267 (283)
Q Consensus 257 ~~l~~~i~~~~ 267 (283)
..|.+..++..
T Consensus 162 ~cit~qvl~~k 172 (198)
T KOG0079|consen 162 HCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 9
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=4e-37 Score=254.28 Aligned_cols=180 Identities=58% Similarity=0.966 Sum_probs=160.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|+.|||||||+ +|+++.|. .+.+|.|.++..+.+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999 99999998 56779999998889999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 258 (283)
|+++++||+++..|++++.+..+..+||+||||+||....+...++...++++++++.++++++++||++|.||+++|++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~ 160 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI 160 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988766667789999999843333333333467888999999999999999999999999999
Q ss_pred HHHHHhCCccccccccCCCCCC
Q 023335 259 IMAKLFNLPWTVKRNLTIGEPI 280 (283)
Q Consensus 259 l~~~i~~~~~~~~~~~~~~~~i 280 (283)
+++.+++.+.....-...||||
T Consensus 161 l~~~l~~~~~~~~~~~~~~~~~ 182 (182)
T cd04128 161 VLAKAFDLPLTIPEILTVGEPI 182 (182)
T ss_pred HHHHHHhcCCChhhhcCCCCCC
Confidence 9999999888888888888886
No 10
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3e-37 Score=244.16 Aligned_cols=168 Identities=21% Similarity=0.364 Sum_probs=151.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +|++++|. .+..|+|.+|..+.+.+++..+.++||||+|||+|.++.-.||++||+.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34699999999999999999 99999999 67779999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC----CCCce-EEEeecCCCCCCCCC-CcccchHHHHHHHHHHcC-CcEEEEcCCC
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIP-ILIGTKFDDFVRLPP-DLQWTIATQARAYAKAMK-ATLFFSSATH 248 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~-ilvgnK~DL~~~l~~-~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~ 248 (283)
+|||+++++||+++..|.+++..+. |..-| ||+|||+|+ +. ..+.+..+.++.||+..| ++|||+|||.
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~----~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~ 162 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDV----DGGKSRQVSEKKAQTWCKSKGNIPYFETSAKE 162 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccC----CCCccceeeHHHHHHHHHhcCCceeEEecccc
Confidence 9999999999999999999988773 23444 799999995 33 336667999999999875 7999999999
Q ss_pred CcCHHHHHHHHHHHHhCCccc
Q 023335 249 NINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~~~ 269 (283)
..||++.|+.+.+.++..+..
T Consensus 163 ~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 163 ATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred cccHHHHHHHHHHHHHhccch
Confidence 999999999999999988753
No 11
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-37 Score=246.89 Aligned_cols=168 Identities=26% Similarity=0.454 Sum_probs=155.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
..-...+||+++|+++||||-|+ ||..++|. +..+|+|+++...++.++++.++.+||||+|||+|+.+...||++|.
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv 88 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV 88 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence 34456899999999999999999 99999999 88899999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 251 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 251 (283)
+.++|||++.+.+|+++..|+.+++.+....++ +|||||+|| ...+.+..++++.+|+..+..++|+||.++.|
T Consensus 89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL-----~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDL-----NHLRAVPTEDGKAFAEKEGLFFLETSALDATN 163 (222)
T ss_pred eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhh-----hhccccchhhhHhHHHhcCceEEEeccccccc
Confidence 999999999999999999999999999765555 699999997 23455669999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023335 252 VNKIFKFIMAKLFNLP 267 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~ 267 (283)
|++.|..++..|++..
T Consensus 164 Ve~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 164 VEKAFERVLTEIYKIV 179 (222)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 12
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.4e-36 Score=248.63 Aligned_cols=164 Identities=23% Similarity=0.374 Sum_probs=147.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|+.|||||||+ +|.++.|. ++.++.+.++....+.+++..+.+++|||+|+++|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 4699999999999999999 99999988 444578888888888999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|||+++++||+++..|++++..+.++.|+||||||+||. ..+.+..++++.+++.+++.|||+||++|.||+++|
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F 159 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLA-----FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESF 159 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccch-----hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999998887777778999999972 223445888999999999999999999999999999
Q ss_pred HHHHHHHhCCc
Q 023335 257 KFIMAKLFNLP 267 (283)
Q Consensus 257 ~~l~~~i~~~~ 267 (283)
+++++.+....
T Consensus 160 ~~l~~~i~~~~ 170 (189)
T cd04121 160 TELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHhc
Confidence 99999887543
No 13
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-36 Score=231.60 Aligned_cols=164 Identities=25% Similarity=0.462 Sum_probs=151.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+|++++|+..||||||+ ++.++.|. ..+.|.|++|..+++.-..+.+++++|||+|+|+|+.+...||++++++||
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 3569999999999999999 99999999 788899999999999888899999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||++|.+||..++.|...|+.+.-. .++||||||||+ ++++.+..+.++.++.++|+.|||+|||.+.||+++
T Consensus 100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDm-----d~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~ 174 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDM-----DSERVISHERGRQLADQLGFEFFETSAKENINVKQV 174 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCC-----ccceeeeHHHHHHHHHHhChHHhhhcccccccHHHH
Confidence 99999999999999999999999764 455799999997 344556699999999999999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 023335 256 FKFIMAKLFNLP 267 (283)
Q Consensus 256 f~~l~~~i~~~~ 267 (283)
|+.++..+.++.
T Consensus 175 Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 175 FERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-35 Score=249.05 Aligned_cols=161 Identities=23% Similarity=0.415 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+.|+++|+.|||||||+ +|+.+.|. .+.+|.+.++..+.+.+++..+.+++|||+|+++|..++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46999999999999999 99999998 45568899998889999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf 256 (283)
|+++++||+++..|++.+.+... +.|+||||||+||. ..+.+..++++++++++ ++.|+++||++|.||+++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHH
Confidence 99999999999999999987754 45557999999972 23445577888899885 7899999999999999999
Q ss_pred HHHHHHHhCC
Q 023335 257 KFIMAKLFNL 266 (283)
Q Consensus 257 ~~l~~~i~~~ 266 (283)
+++++.+.+.
T Consensus 156 ~~l~~~~~~~ 165 (202)
T cd04120 156 LKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHh
Confidence 9999988764
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.3e-35 Score=241.33 Aligned_cols=165 Identities=22% Similarity=0.362 Sum_probs=142.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|+++||||||+ +|+.+.|. ++.+|.+..+ .+.+.+++..+.+++|||+|+++|..+...+++++|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 79999999999999999 99999998 5667877665 456778999999999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC-----CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335 179 DLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP-----PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN 251 (283)
Q Consensus 179 D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-----~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 251 (283)
|+++++||+++ ..|+++++...++.|+||||||+||..+-. ...+.+..+++.++++.+++ .|+||||++|.|
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n 160 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN 160 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence 99999999998 689999988877767789999999732100 01123558899999999998 599999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023335 252 VNKIFKFIMAKLFNL 266 (283)
Q Consensus 252 v~~lf~~l~~~i~~~ 266 (283)
|+++|+.+++.+.+.
T Consensus 161 V~~~F~~~~~~~~~~ 175 (176)
T cd04133 161 VKAVFDAAIKVVLQP 175 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999987553
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=3.4e-35 Score=242.57 Aligned_cols=167 Identities=26% Similarity=0.342 Sum_probs=144.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +|+.+.|. .+.||.+.++ .+.+.+++..+.+++|||+|+++|..+.+.+++++|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 35789999999999999999 99999998 5556777665 467888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa 246 (283)
+|||+++++||+++ ..|+++++++.++.|+||||||+||..... . ..+.+..++++++|+++++ +|+||||
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 161 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 161 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence 99999999999998 799999999887777789999999732110 0 1123558899999999996 8999999
Q ss_pred CCCcC-HHHHHHHHHHHHhC
Q 023335 247 THNIN-VNKIFKFIMAKLFN 265 (283)
Q Consensus 247 ~~~~~-v~~lf~~l~~~i~~ 265 (283)
++|.| |+++|+.+++.+++
T Consensus 162 k~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 162 LQSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99998 99999999997665
No 17
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-36 Score=228.67 Aligned_cols=164 Identities=23% Similarity=0.415 Sum_probs=150.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|..|||||+|+ +|..+-|. ..-.|+|++|+.+++.++|.+++++||||+|+++|+++...||+.|+++|
T Consensus 5 kflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 5 KFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred ceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 45689999999999999999 99999998 66669999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++...||+.+.+|+.+|.+|..++.. |+||||.|+ .+++++..+.+++|++...+-|.|+||+..+||+.
T Consensus 85 lvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~-----~drrevp~qigeefs~~qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 85 LVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDL-----ADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK 159 (213)
T ss_pred EEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccch-----hhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence 999999999999999999999999766666 899999996 34556668889999999888788999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|..+...+...
T Consensus 160 lf~~~a~rli~~ 171 (213)
T KOG0095|consen 160 LFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHH
Confidence 999998877553
No 18
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=5.2e-36 Score=232.52 Aligned_cols=165 Identities=21% Similarity=0.409 Sum_probs=149.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
...+++++||++-||||||+ .|..++|. -..||.|+||+.+.+.+ +|..+++++|||+|||+|+++...||+++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35799999999999999999 99999999 56779999999887776 68899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 251 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 251 (283)
++|||++|++||+.+..|+.+...+. |.+++ .|||+|+|| ...+.+..++++++++.+|+.|+|+||++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL-----~SqRqVt~EEaEklAa~hgM~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDL-----QSQRQVTAEEAEKLAASHGMAFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccch-----hhhccccHHHHHHHHHhcCceEEEecccCCCc
Confidence 99999999999999999999988774 55666 499999997 24566779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023335 252 VNKIFKFIMAKLFNLP 267 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~ 267 (283)
|++.|..+.+.++..-
T Consensus 161 VeEAF~mlaqeIf~~i 176 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAI 176 (213)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 19
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=6.9e-36 Score=230.70 Aligned_cols=167 Identities=28% Similarity=0.474 Sum_probs=154.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|..-||||||+ +|+.++|. ....|....|..+.+.+.+....+.||||+||++|..+.+.||+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 35899999999999999999 99999999 77778888999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++|++||+.++.|..+++....+.+- +|||||+|| ++++.+..+++..+++..|+.|+++||+.+.||.+
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDL-----EeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e 165 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDL-----EEERQVTRQEAEAYAESVGALYMETSAKDNVGISE 165 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccH-----HHhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence 999999999999999999999998776666 699999997 35566779999999999999999999999999999
Q ss_pred HHHHHHHHHhCCccc
Q 023335 255 IFKFIMAKLFNLPWT 269 (283)
Q Consensus 255 lf~~l~~~i~~~~~~ 269 (283)
+|+.+.+.+++.-..
T Consensus 166 lFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 166 LFESLTAKMIEHSSQ 180 (218)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998876533
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-34 Score=238.63 Aligned_cols=164 Identities=25% Similarity=0.333 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|++|||||||+ +|+++.|. .+.||.+.++ .+.+.+++..+.+++|||+|++.|..+.+.+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 479999999999999999 99999998 5556777665 46788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335 178 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSATH 248 (283)
Q Consensus 178 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 248 (283)
||+++++||+++ ..|+++++++.++.|+||||||+||..+.. . ....+..++++++++++++ .|+|+||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 999999999996 799999999887777789999999732100 0 1123558899999999997 799999999
Q ss_pred CcC-HHHHHHHHHHHHh
Q 023335 249 NIN-VNKIFKFIMAKLF 264 (283)
Q Consensus 249 ~~~-v~~lf~~l~~~i~ 264 (283)
|+| |+++|..+++..+
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999999655
No 21
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-35 Score=227.10 Aligned_cols=165 Identities=23% Similarity=0.359 Sum_probs=152.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+|++++|+.|.|||+|+ +|+.++|. ....|+|++|..+.+.+.++.++++||||+|||+|++..+.||++|.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 45789999999999999999 99999999 55569999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++++||+.+..|+..++...+..+. |++|||.|| +..+++...++..||.+..+.+.|+||++|+||+|
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL-----~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDL-----DPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhc-----ChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 999999999999999999999998776666 689999997 34466678999999999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
.|-...+.++++-
T Consensus 162 aFl~c~~tIl~kI 174 (214)
T KOG0086|consen 162 AFLKCARTILNKI 174 (214)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 22
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=4.2e-34 Score=243.75 Aligned_cols=168 Identities=24% Similarity=0.302 Sum_probs=145.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +|+++.|. .+.||.+.++ ...+.+++..+.++||||+|++.|..+.+.|++++|++|
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 45799999999999999999 99999998 5666888776 456788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa 246 (283)
+|||+++++||+++ ..|++++....++.|+||||||+||..... . ..+.+..++++++|+++++ .||||||
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA 169 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA 169 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence 99999999999985 799999998877777789999999732110 0 1234558899999999999 6999999
Q ss_pred CCCc-CHHHHHHHHHHHHhCC
Q 023335 247 THNI-NVNKIFKFIMAKLFNL 266 (283)
Q Consensus 247 ~~~~-~v~~lf~~l~~~i~~~ 266 (283)
++|+ ||+++|..+++.+++.
T Consensus 170 ktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 170 FTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CcCCcCHHHHHHHHHHHHHHh
Confidence 9998 8999999999988764
No 23
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=7e-34 Score=236.68 Aligned_cols=167 Identities=20% Similarity=0.271 Sum_probs=142.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|+.|||||||+ +|+.+.|. .+.||.+.++ .+.+.+++..+.+++|||+|+++|..+++.|++++|++|+
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 3589999999999999999 99999997 5566777655 4556789999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335 177 MFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMK-ATLFFSSAT 247 (283)
Q Consensus 177 v~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~-~~~~e~Sa~ 247 (283)
|||+++++||+++. .|++++....++.|++|||||+||.+.... ....+..++++++++.++ +.|+|+||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999996 699989887767677899999997322110 001234678999999998 589999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|.||+++|+++++.+...
T Consensus 161 ~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988764
No 24
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.6e-33 Score=227.70 Aligned_cols=161 Identities=23% Similarity=0.394 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ ++.++.|.. +.+|.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999999999 999999884 445888888888888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||+++++||+.+..|++.+..... +.|+++||||+|+. ..+....+++.++++..+++++++||++|.||+++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f 156 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE-----AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 999999999999999999877643 45557999999962 223345778899999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
.++++.+++
T Consensus 157 ~~l~~~~~~ 165 (166)
T cd04122 157 LETAKKIYQ 165 (166)
T ss_pred HHHHHHHhh
Confidence 999998865
No 25
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.4e-35 Score=220.80 Aligned_cols=161 Identities=24% Similarity=0.413 Sum_probs=147.0
Q ss_pred EEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 104 ~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
+++|++++|||+|+ +|..+.|- ...+|.|++|..+.+.++++++++++|||+|||+|++....||+++|+.+++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 37899999999999 99999988 5667999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023335 181 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 259 (283)
+|+.||++++.|+.+|.++...... .++|||+|+ ..++.+..++++++++.++++|+|+||++|.||+-.|-.|
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~-----a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~i 155 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDL-----AHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAI 155 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhcccccc-----chhhccccchHHHHHHHHCCCceeccccccccHhHHHHHH
Confidence 9999999999999999999877666 599999996 1224455889999999999999999999999999999999
Q ss_pred HHHHhCCccc
Q 023335 260 MAKLFNLPWT 269 (283)
Q Consensus 260 ~~~i~~~~~~ 269 (283)
.+.+.+....
T Consensus 156 a~~l~k~~~~ 165 (192)
T KOG0083|consen 156 AEELKKLKMG 165 (192)
T ss_pred HHHHHHhccC
Confidence 9999876543
No 26
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=4.4e-33 Score=233.65 Aligned_cols=167 Identities=20% Similarity=0.354 Sum_probs=145.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+|+|++|||||||+ +|+++.+. .+.+|.+.++..+.+.++ +..+.+.+|||+|++.|..+++.+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 59999999999999999 99999988 566788999888888888 8899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNIN 251 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~ 251 (283)
||+++++||+++..|+.++.... .+.|.||||||+||. + ......+++.++++.++ ..++++||++|.|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~ 155 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK----K-RLAKDGEQMDQFCKENGFIGWFETSAKEGIN 155 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc----c-ccccCHHHHHHHHHHcCCceEEEEeCCCCCC
Confidence 99999999999999999887642 345568999999972 1 23445788999999998 6899999999999
Q ss_pred HHHHHHHHHHHHhCCcccccc
Q 023335 252 VNKIFKFIMAKLFNLPWTVKR 272 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~~~~~~ 272 (283)
|+++|++|++.+.+......+
T Consensus 156 v~e~f~~l~~~l~~~~~~~~~ 176 (201)
T cd04107 156 IEEAMRFLVKNILANDKNLQQ 176 (201)
T ss_pred HHHHHHHHHHHHHHhchhhHh
Confidence 999999999999876544333
No 27
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=4.8e-33 Score=236.38 Aligned_cols=162 Identities=23% Similarity=0.321 Sum_probs=143.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++.+.|. .+.+|.|.++....+..++..+.+.+|||+|+++|..++..|++++|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 55799999999999999999 99999998 66678899988888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
+|||+++++||+++..|+.++.+..++.|++|||||+||. .+.+..+++ .+++..++.||++||++|.||+++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~------~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK------NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh------hccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence 9999999999999999999999887777778999999972 122223444 777888999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023335 256 FKFIMAKLFNL 266 (283)
Q Consensus 256 f~~l~~~i~~~ 266 (283)
|++|++.+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999999765
No 28
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=4e-33 Score=236.48 Aligned_cols=167 Identities=23% Similarity=0.346 Sum_probs=143.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+|+|++|||||||+ +|..+.|. .+.||.+.++. ..+.+++..+.+.+|||+|++.|..+++.+|+++|++|+|
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 379999999999999999 99999998 56678776664 6778899999999999999999999999999999999999
Q ss_pred EECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCC------Cc-ccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335 178 FDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPP------DL-QWTIATQARAYAKAMKA-TLFFSSATH 248 (283)
Q Consensus 178 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~------~~-~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 248 (283)
||+++++||+++ ..|..++....++.|+||||||+||..+... .. ..+..+++..+++++++ .|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999999 5798888888878888999999998432110 01 12447899999999996 899999999
Q ss_pred CcC-HHHHHHHHHHHHhCCc
Q 023335 249 NIN-VNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~-v~~lf~~l~~~i~~~~ 267 (283)
+.| |+++|+.++...++..
T Consensus 160 ~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 160 SERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCcCHHHHHHHHHHHHHhcc
Confidence 985 9999999999887754
No 29
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=5.6e-33 Score=228.11 Aligned_cols=162 Identities=18% Similarity=0.264 Sum_probs=138.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +|+.+.|. .+.||.+.++. ..+.+++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 79999999999999999 99999997 66677776664 45678899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCC------CC-CcccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL------PP-DLQWTIATQARAYAKAMK-ATLFFSSATHN 249 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l------~~-~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 249 (283)
|+++++||+++. .|+.++....++.|.||||||+|+...- .. ..+.+..+++++++++.+ +.|+|+||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 999999999996 6999998877777778999999973210 00 113345788999999887 68999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023335 250 INVNKIFKFIMAKL 263 (283)
Q Consensus 250 ~~v~~lf~~l~~~i 263 (283)
.||+++|+.+++..
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 30
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.7e-33 Score=224.88 Aligned_cols=157 Identities=25% Similarity=0.452 Sum_probs=140.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.|. .+.+|.+.++..+.+.+++..+.+++||++|++++..+...+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999 99999998 55678888888888899998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|+++++||+.+..|++++....+. .|+++||||+||. ..+.+..+++..+++.++++|+++||++|.||+++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~ 155 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEE-----QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFT 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654 4557999999962 2234457889999999999999999999999999999
Q ss_pred HHHHH
Q 023335 258 FIMAK 262 (283)
Q Consensus 258 ~l~~~ 262 (283)
+|++.
T Consensus 156 ~l~~~ 160 (161)
T cd04117 156 RLTEL 160 (161)
T ss_pred HHHhh
Confidence 99865
No 31
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=5e-33 Score=227.75 Aligned_cols=161 Identities=13% Similarity=0.195 Sum_probs=140.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +|+++.|. .+.+|.+..+ .+.+.+++..+.+++|||+|+++|..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 479999999999999999 99999998 5556776554 45678899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||+++++||+.+..|+..+.... ++.|+++||||+|+. ..+.+..++++++++.++++|+++||++|.||+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-----SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-----hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHH
Confidence 99999999999999998887753 355668999999962 22334577889999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023335 256 FKFIMAKLFNL 266 (283)
Q Consensus 256 f~~l~~~i~~~ 266 (283)
|+++++.+.+.
T Consensus 156 f~~l~~~~~~~ 166 (172)
T cd04141 156 FHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 32
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-34 Score=222.93 Aligned_cols=165 Identities=27% Similarity=0.418 Sum_probs=147.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC---------CeEEEEEEEeCCCCCCcccchhh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ---------GARIAFSIWDVGGDSRSFDHVPI 166 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~---------~~~~~l~i~Dt~G~~~~~~~~~~ 166 (283)
...+|.+.+|++||||||++ ++..++|. .-..|.|+||..+.+.++ +..+.+++|||+|||+|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 34689999999999999999 99999999 777899999999888763 46799999999999999999999
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
|+++|-+++++||+++..||-++++|+.+++.+ ++++-+|++|||+|| ++.+.+..+++.++|.++++||||+
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL-----~~~R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL-----EDQRVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch-----hhhhhhhHHHHHHHHHHhCCCeeee
Confidence 999999999999999999999999999998865 556566899999997 3445566899999999999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCc
Q 023335 245 SATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
||-+|.||++..+.++..++++-
T Consensus 162 SA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 162 SACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred ccccCcCHHHHHHHHHHHHHHHH
Confidence 99999999999988888776643
No 33
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.6e-32 Score=224.33 Aligned_cols=163 Identities=25% Similarity=0.386 Sum_probs=142.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
||+++|++|||||||+ +++++.|. ++.+|.+.++..+.+.+++..+.+++|||+|+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 8999999999999999 99999998 666788999888888899999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH-CCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKW-NQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~-~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
++++++|+.+..|++++.+. .++.+| ++||||+||. +........+++..++++++++|+++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~ 158 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLS---SPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFF 158 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcC---ccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999998765 344455 7999999962 211112346778888888999999999999999999999
Q ss_pred HHHHHHhCCc
Q 023335 258 FIMAKLFNLP 267 (283)
Q Consensus 258 ~l~~~i~~~~ 267 (283)
.+++.+.+.+
T Consensus 159 ~l~~~~~~~~ 168 (170)
T cd04108 159 RVAALTFELG 168 (170)
T ss_pred HHHHHHHHcc
Confidence 9999987754
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1e-32 Score=222.84 Aligned_cols=158 Identities=27% Similarity=0.472 Sum_probs=144.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
||+++|+++||||||+ +|.++.|. .+.+|.|.+...+.+.+++..+.+++||++|++.|..+...+++++|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999 99999988 566688899999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 258 (283)
+++++||+++..|++.+..+.+. .|++|||||.|+. ..+.+..+++++++++++++|+|+||+++.||.++|..
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 155 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLS-----DEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQE 155 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGG-----GGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHH
T ss_pred ccccccccccccccccccccccccccceeeecccccc-----ccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999999884 5557999999962 23455578999999999999999999999999999999
Q ss_pred HHHHHh
Q 023335 259 IMAKLF 264 (283)
Q Consensus 259 l~~~i~ 264 (283)
+++.+.
T Consensus 156 ~i~~i~ 161 (162)
T PF00071_consen 156 LIRKIL 161 (162)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999875
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=2.2e-32 Score=222.54 Aligned_cols=162 Identities=21% Similarity=0.396 Sum_probs=143.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ ++.++.|. .+.+|.+.++....+.+++..+.+++||++|++.+..+...+++++|++|+
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3589999999999999999 99999988 566788888888888899989999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||++++++|+.+..|+..+..+.. +.|+++||||+|+. + ......+++..+++.++++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME----E-KRVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc----c-ccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999999988754 44558999999972 1 2233467788899999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023335 256 FKFIMAKLFN 265 (283)
Q Consensus 256 f~~l~~~i~~ 265 (283)
|+++.+.+.+
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 36
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.6e-32 Score=225.79 Aligned_cols=162 Identities=27% Similarity=0.445 Sum_probs=140.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC----------CeEEEEEEEeCCCCCCcccchhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ----------GARIAFSIWDVGGDSRSFDHVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~----------~~~~~l~i~Dt~G~~~~~~~~~~ 166 (283)
..+||+++|++|||||||+ ++.++.+. .+.+|.+.++....+.+. +..+.+++|||+|+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4699999999999999999 99999998 566788888877766654 45789999999999999999999
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
+++++|++++|||+++++||.++..|+.++.... ++.|+++||||+||. ....+..+++.++++.++++++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~ 157 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-----DQRQVSEEQAKALADKYGIPYFET 157 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-----hcCccCHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999999999998764 345557999999972 122344677899999999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhC
Q 023335 245 SATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
||++|.|++++|++|++.+++
T Consensus 158 Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 158 SAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred eCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999998865
No 37
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=3.2e-32 Score=221.13 Aligned_cols=160 Identities=24% Similarity=0.483 Sum_probs=140.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++.+++|. .+.+|.+.++....+..++..+.+++|||+|++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999 99999998 56678888887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|++++++|+.+..|+.++..+.. ..|+++||||+||. + .+....+++.++++.++++++++||++|.|++++|+
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 156 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME----D-ERVVSSERGRQLADQLGFEFFEASAKENINVKQVFE 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC----c-ccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999988764 45558999999972 1 222346777888888999999999999999999999
Q ss_pred HHHHHHhC
Q 023335 258 FIMAKLFN 265 (283)
Q Consensus 258 ~l~~~i~~ 265 (283)
++++.+.+
T Consensus 157 ~l~~~~~~ 164 (165)
T cd01865 157 RLVDIICD 164 (165)
T ss_pred HHHHHHHh
Confidence 99987754
No 38
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=4.5e-32 Score=220.77 Aligned_cols=160 Identities=24% Similarity=0.372 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++.+.+. ...+|.+.++....+..++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 59999999999999999 99998887 56678888888777778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 258 (283)
|+++.+||+.+..|+.++.....+.|+++||||+|+. .. ....+..++++..++++|++||++|.|++++|++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~------~~-~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ 153 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIK------DR-KVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLW 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcc------cc-cCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHH
Confidence 9999999999999999999887777778999999972 11 1223445677778889999999999999999999
Q ss_pred HHHHHhCCc
Q 023335 259 IMAKLFNLP 267 (283)
Q Consensus 259 l~~~i~~~~ 267 (283)
|++.+.+.+
T Consensus 154 l~~~~~~~~ 162 (166)
T cd00877 154 LARKLLGNP 162 (166)
T ss_pred HHHHHHhcc
Confidence 999997644
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=4.3e-32 Score=220.31 Aligned_cols=161 Identities=20% Similarity=0.418 Sum_probs=142.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+++||++|++++..++..+++++|++|+|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 489999999999999999 99999988 5567888888888888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||+++++||+++..|+..+.... ++.|.++||||+|+. . ......+++..+++.++++++++||++|.|++++|
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~ 156 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT----D-KRVVDYSEAQEFADELGIPFLETSAKNATNVEQAF 156 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcc----c-ccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHH
Confidence 99999999999999999998876 345668999999962 1 22344678889999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
++|++.+.+
T Consensus 157 ~~i~~~~~~ 165 (166)
T cd01869 157 MTMAREIKK 165 (166)
T ss_pred HHHHHHHHh
Confidence 999998753
No 40
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=4.2e-32 Score=222.70 Aligned_cols=161 Identities=24% Similarity=0.355 Sum_probs=136.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++.+.|. ++.+|.+ +.....+.+++..+.+.+|||+|++.|..+++.+++++|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 79999999999999999 99999998 5556665 444566778899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHN 249 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 249 (283)
|+++++||+++. .|+..+....++.|+||||||+||...-. .....+..+++.+++++++. .|+|+||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999996 69999888777777789999999732100 00123458889999999985 8999999999
Q ss_pred cCHHHHHHHHHHH
Q 023335 250 INVNKIFKFIMAK 262 (283)
Q Consensus 250 ~~v~~lf~~l~~~ 262 (283)
+||+++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 41
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-33 Score=211.05 Aligned_cols=168 Identities=23% Similarity=0.372 Sum_probs=153.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.-+|.+++|+-|||||+|+ +|..++|. +...|+|++|..+.+.+.|++++++||||+|+++|+...+.||+++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 4689999999999999999 99999999 555599999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||++.+.+++.+..|+...+.. +++..++++|||.|| ++.+.+..+++.+|+++.|..|.|+||++|+||++.
T Consensus 90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadl-----e~qrdv~yeeak~faeengl~fle~saktg~nveda 164 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADL-----ESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDA 164 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhh-----hhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHH
Confidence 99999999999999999998877 567777899999997 345566799999999999999999999999999999
Q ss_pred HHHHHHHHhCCccccc
Q 023335 256 FKFIMAKLFNLPWTVK 271 (283)
Q Consensus 256 f~~l~~~i~~~~~~~~ 271 (283)
|-...+.+.++-+.-.
T Consensus 165 fle~akkiyqniqdgs 180 (215)
T KOG0097|consen 165 FLETAKKIYQNIQDGS 180 (215)
T ss_pred HHHHHHHHHHhhhcCc
Confidence 9999999887654433
No 42
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=7.1e-32 Score=225.99 Aligned_cols=164 Identities=23% Similarity=0.433 Sum_probs=146.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+|+|++|||||||+ +|.++.|. .+.+|.+.++....+.+++..+.+.+||++|++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 3699999999999999999 99999988 566788888888888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|||+++++||+.+..|++.+....+..|++|||||+|+. + ......+++..+++.+++++|++||++|.||+++|
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf 159 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP----E-RKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHH
Confidence 999999999999999999998877777778999999962 1 22334677888998999999999999999999999
Q ss_pred HHHHHHHhCCc
Q 023335 257 KFIMAKLFNLP 267 (283)
Q Consensus 257 ~~l~~~i~~~~ 267 (283)
++|.+.++...
T Consensus 160 ~~l~~~~~~~~ 170 (199)
T cd04110 160 NCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=4.2e-32 Score=230.09 Aligned_cols=162 Identities=26% Similarity=0.413 Sum_probs=142.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+++|++|||||||+ +|+++.|. .+.+|.+.++..+.+.+++ ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 59999999999999999 99999988 5667999999888888865 579999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCC---CCc-eEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQ---TAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~---~~~-~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
||+++++||+++..|++.+.+... ..+ +++||||+||. ..+.+..+++..+++.++++++++||++|+||+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-----~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-----HNRTVKDDKHARFAQANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999999988743 234 46899999972 223445778889999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023335 254 KIFKFIMAKLFNLP 267 (283)
Q Consensus 254 ~lf~~l~~~i~~~~ 267 (283)
++|+++++.+....
T Consensus 156 ~lf~~l~~~l~~~~ 169 (215)
T cd04109 156 LLFQQLAAELLGVD 169 (215)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999998654
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=6e-32 Score=218.33 Aligned_cols=158 Identities=18% Similarity=0.303 Sum_probs=135.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|++|||||||+ +++.+.|...+ +|++ +...+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 379999999999999999 99999988444 4555 55567788899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||++++++|+++..|++.+.... .+.|.++||||+|+. . ......+++..+++.++++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE----D-ERVVSREEGQALARQWGCPFYETSAKSKINVDEV 154 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 99999999999999999998763 345668999999962 1 2233466777888888899999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|+++++.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998765
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.4e-32 Score=218.77 Aligned_cols=160 Identities=18% Similarity=0.369 Sum_probs=141.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++|+||
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 59999999999999999 99999988 66678899988888999999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
|++++++|+.+..|+.++.++.. ..|+++|+||+|+. + ......++.+.+++..+++++++||++|.|+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 155 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT----K-HRAVSEDEGRLWAESKGFKYFETSACTGEGV 155 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc----c-ccccCHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 99999999999999999988753 34557999999962 1 2334477778888988999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 023335 253 NKIFKFIMAKLFN 265 (283)
Q Consensus 253 ~~lf~~l~~~i~~ 265 (283)
+++|++|++.+++
T Consensus 156 ~~l~~~l~~~l~~ 168 (168)
T cd04119 156 NEMFQTLFSSIVD 168 (168)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998763
No 46
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6.6e-32 Score=224.36 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=138.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.||+++|++|||||||+ +|.++.|. .+.+|.+.++ ...+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 38999999999999999 99999998 4455666654 356677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-------cccchHHHHHHHHHHcC-CcEEEEcCCCC
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMK-ATLFFSSATHN 249 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-------~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~ 249 (283)
|+++++||+.+. .|++.+....++.|+||||||+||....... ...+..+++.++++..+ +.|+++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999996 6999999877777778999999973221100 01233667888888887 68999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023335 250 INVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~~ 267 (283)
.||+++|+++++.++...
T Consensus 160 ~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 160 RGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCHHHHHHHHHHHHhccc
Confidence 999999999999987543
No 47
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.1e-31 Score=217.25 Aligned_cols=158 Identities=26% Similarity=0.467 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.|. ...++.+.++..+.+.+++..+.+++|||+|++.|..++..+++++|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999 99999988 44457777777777888899999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKF 258 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 258 (283)
|++++.+|+++..|+..+++..++.|.++|+||+|+ .. ...++...+++..+++++++||++|.|++++|+.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl----~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 152 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL----DP----SVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQD 152 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccC----ch----hHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999887767777999999996 11 1234566777888899999999999999999999
Q ss_pred HHHHHhCC
Q 023335 259 IMAKLFNL 266 (283)
Q Consensus 259 l~~~i~~~ 266 (283)
+++.+.+.
T Consensus 153 l~~~~~~~ 160 (161)
T cd04124 153 AIKLAVSY 160 (161)
T ss_pred HHHHHHhc
Confidence 99988754
No 48
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=6.1e-32 Score=218.30 Aligned_cols=153 Identities=22% Similarity=0.362 Sum_probs=128.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ +++.+.|...+++++..+ .+.+.+++..+.+.+|||+|++. ..+++++|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 58999999999999999 999999885555555555 46788999999999999999975 346789999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVNKIF 256 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf 256 (283)
+++++||+++..|++++..+. ++.|++|||||+||. ....+.+..++++++++.. ++.|+||||++|.||+++|
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f 151 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAIS---ESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVF 151 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhh---hcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH
Confidence 999999999999999998875 345667999999961 1123445577888999876 4899999999999999999
Q ss_pred HHHHHH
Q 023335 257 KFIMAK 262 (283)
Q Consensus 257 ~~l~~~ 262 (283)
+.+++.
T Consensus 152 ~~~~~~ 157 (158)
T cd04103 152 QEAAQK 157 (158)
T ss_pred HHHHhh
Confidence 999865
No 49
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=7.4e-32 Score=225.63 Aligned_cols=154 Identities=23% Similarity=0.333 Sum_probs=137.0
Q ss_pred EcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh
Q 023335 106 LGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (283)
Q Consensus 106 lG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~ 183 (283)
+|++|||||||+ +|+.+.|. .+.+|.|.++..+.+.+++..+.+.||||+|+++|..++..|++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 699999999999 99999988 5667889999888889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 184 CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 184 ~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
+||+.+..|++++.+..++.|+||||||+||. . +.+..+ ...+++..++.|+||||++|.||+++|++|++.+
T Consensus 81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~----~--~~v~~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i 153 (200)
T smart00176 81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVK----D--RKVKAK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 153 (200)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECcccc----c--ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999887777778999999972 1 222233 3467888899999999999999999999999998
Q ss_pred hCC
Q 023335 264 FNL 266 (283)
Q Consensus 264 ~~~ 266 (283)
.+.
T Consensus 154 ~~~ 156 (200)
T smart00176 154 IGD 156 (200)
T ss_pred Hhc
Confidence 765
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.3e-31 Score=217.10 Aligned_cols=158 Identities=20% Similarity=0.270 Sum_probs=135.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|++|||||||+ +++.+.+.+ +.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 479999999999999999 999998874 445665544 46778889899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||+++.++|+++.+|+..+.... .+.|.+|||||+||. . ......+++..+++.++++++++||++|.|++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE----D-ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch----h-ccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHH
Confidence 99999999999999999987653 355668999999972 1 1223356678888889999999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (164)
T cd04175 155 FYDLVRQI 162 (164)
T ss_pred HHHHHHHh
Confidence 99999865
No 51
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=8.5e-32 Score=223.87 Aligned_cols=162 Identities=18% Similarity=0.254 Sum_probs=137.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
||+++|++|||||||+ +|+.+.|.. +.+|++..+ .+.+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 6899999999999999 999999884 445665444 4566788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
+++.+||+.+..|++.+.... .+.|+||||||+|+. . ......+++.++++.++++|+++||++|.|++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV----Y-EREVSTEEGAALARRLGCEFIEASAKTNVNVERA 154 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc----c-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHH
Confidence 999999999999999987764 345667999999962 1 2334466778889999999999999999999999
Q ss_pred HHHHHHHHhCCccc
Q 023335 256 FKFIMAKLFNLPWT 269 (283)
Q Consensus 256 f~~l~~~i~~~~~~ 269 (283)
|+++++.+.+....
T Consensus 155 ~~~l~~~l~~~~~~ 168 (190)
T cd04144 155 FYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHhhcc
Confidence 99999988765433
No 52
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=8.4e-32 Score=228.22 Aligned_cols=164 Identities=23% Similarity=0.400 Sum_probs=137.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+|+|++|||||||+ +|+.+.|....+|++.++....+ ..+.+.+|||+|++.|..++..+++++|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 58999999999999999 99999998767788877654433 46789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC--------------CCcccchHHHHHHHHHHcC------
Q 023335 180 LTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP--------------PDLQWTIATQARAYAKAMK------ 238 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~--------------~~~~~~~~~~~~~~~~~~~------ 238 (283)
+++++||+++..|+..+.+... +.|+||||||+||..... ...+.+..+++..++++++
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~ 156 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLD 156 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccccc
Confidence 9999999999988887776543 455589999999843100 0134555889999999876
Q ss_pred --------CcEEEEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335 239 --------ATLFFSSATHNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 239 --------~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
++|+||||++|.||+++|..+++.++....
T Consensus 157 ~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 157 EDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred ccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999998876553
No 53
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-31 Score=223.66 Aligned_cols=161 Identities=20% Similarity=0.327 Sum_probs=128.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hh-hcCc-----cc-ccccccee-eeeEEE--------EEECCeEEEEEEEeCCCCCCccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KY-VGNE-----QE-RSLQMAGL-NLINKT--------LMVQGARIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~-~~~~-----~~-~~~~t~~~-~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~ 162 (283)
.+||+++|+.|||||||+ ++ .++. |. .+.||++. +.+... +.+++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 479999999999999999 54 4433 33 44567752 333222 25789999999999999986 3
Q ss_pred chhhhcccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC--------------CCcccchH
Q 023335 163 HVPIACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP--------------PDLQWTIA 227 (283)
Q Consensus 163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~--------------~~~~~~~~ 227 (283)
+...+++++|++|+|||+++++||+++. .|+++++...++.|+||||||+||..... ...+.+..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~ 159 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP 159 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence 5667899999999999999999999997 69999988776677789999999742100 01244558
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 228 TQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
++++++|++++++|+||||++|.||+++|+.+++.
T Consensus 160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 89999999999999999999999999999999864
No 54
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-31 Score=222.82 Aligned_cols=164 Identities=24% Similarity=0.458 Sum_probs=144.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+++|++|||||||+ +++++.+. .+.+|++.++..+.+.+++..+.++||||+|++++..+...+++++|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999 99999986 4556888888877888999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||+++++||+++..|+..+....+.. |.++||||+|+. . .+....+++..+++.++++|+++||++|.|++++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~----~-~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~ 155 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMS----G-ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAF 155 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccch----h-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999887544 447999999962 1 23334677888999999999999999999999999
Q ss_pred HHHHHHHhCCccc
Q 023335 257 KFIMAKLFNLPWT 269 (283)
Q Consensus 257 ~~l~~~i~~~~~~ 269 (283)
++|.+.+.+..+.
T Consensus 156 ~~l~~~~~~~~~~ 168 (191)
T cd04112 156 TAVAKELKHRKYE 168 (191)
T ss_pred HHHHHHHHHhccc
Confidence 9999999887644
No 55
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=221.93 Aligned_cols=163 Identities=16% Similarity=0.235 Sum_probs=140.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. .+.+|.+.++ .+.+.+++..+.+++|||+|+++|..++..+++++|++++
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 4699999999999999999 99999988 4445666555 5677889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||+++++||+++..|+..+..... +.|.++||||+|+. . ...+..+++..+++.++++++++||++|.||++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD----S-ERQVSTGEGQELAKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-ccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 9999999999999999999887643 44557999999962 1 223346677888888899999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|+++++.+.+..
T Consensus 158 ~~~~l~~~l~~~~ 170 (189)
T PTZ00369 158 AFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 56
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=2.1e-31 Score=215.57 Aligned_cols=159 Identities=18% Similarity=0.260 Sum_probs=135.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
++||+++|++|||||||+ +++.+.+...+.++..++....+.+++..+.+++|||+|+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 479999999999999999 9999998844443334666678888998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|+++++||+++..|+..+.... .+.|.++||||+|+. . ......++...+++.++++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE----S-EREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch----h-cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999988763 355668999999962 1 12233556788888888999999999999999999
Q ss_pred HHHHHHH
Q 023335 257 KFIMAKL 263 (283)
Q Consensus 257 ~~l~~~i 263 (283)
+++++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd04176 156 AEIVRQM 162 (163)
T ss_pred HHHHHhc
Confidence 9998764
No 57
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.6e-31 Score=220.40 Aligned_cols=162 Identities=20% Similarity=0.424 Sum_probs=143.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++.++.|. .+.+|.+.++..+.+.+++..+.+++||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999 99999998 46678898888888889998999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|+++++||+++..|+.++..+... .|.|+||||+|+. ....+..+++..+++..+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~ 155 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLV-----NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFI 155 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCc-----ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999987654 4457999999972 1223346777888888899999999999999999999
Q ss_pred HHHHHHhCCc
Q 023335 258 FIMAKLFNLP 267 (283)
Q Consensus 258 ~l~~~i~~~~ 267 (283)
++++.+.+..
T Consensus 156 ~l~~~~~~~~ 165 (188)
T cd04125 156 LLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 58
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1.7e-31 Score=225.74 Aligned_cols=163 Identities=23% Similarity=0.434 Sum_probs=142.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+ ++..+.+++|||+|++.+..+...+++++|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999 99999988 55678889988888877 4678999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC-CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||+++++||+++..|+.++.... +..++ +|||||+|+. ....+..+++..+++.++++|+++||++|.||++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-----SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999998764 33454 7899999972 1233457788899999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|++|++.+.+..
T Consensus 157 ~f~~l~~~~~~~~ 169 (211)
T cd04111 157 AFELLTQEIYERI 169 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 59
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.98 E-value=2.9e-31 Score=215.11 Aligned_cols=159 Identities=26% Similarity=0.475 Sum_probs=141.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ ++.++.+. .+.++.+.++..+.+.+++..+.+.+||++|++++..+...++++++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 489999999999999999 99999988 6778889888888999999889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||++++++|+++..|+.++...... .|+++||||+|+. . .+....++...+++..++.++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 157 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR----H-LRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-cccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 9999999999999999999888765 4447999999962 1 23344677888888889999999999999999999
Q ss_pred HHHHHHH
Q 023335 257 KFIMAKL 263 (283)
Q Consensus 257 ~~l~~~i 263 (283)
+++++.+
T Consensus 158 ~~l~~~i 164 (165)
T cd01868 158 KQLLTEI 164 (165)
T ss_pred HHHHHHh
Confidence 9999876
No 60
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=4.7e-31 Score=212.46 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=134.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|++|||||||+ +++++.+. .+.+|.+.. ..+.+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchhe-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 479999999999999999 99999987 444565544 456777888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||++++++|+++..|+..+.+.. .+.|++||+||+|+. . .....+++.++++..+++++++||++|.|++++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLA----A--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEA 153 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHH
Confidence 99999999999999999988764 345668999999962 1 334467788888888999999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|+++++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 61
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=3.3e-31 Score=219.38 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+|+|++|||||||+ +++++.+. .+.+|.+.++.. .+... +..+.+.+|||+|+++|..+++.+++++|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 59999999999999999 99999988 555566666543 45554 7789999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l 255 (283)
||+++++||+++. .|+..+....++.|+|+||||+||....+ ....+..++++++++.+++ +++++||++|.||+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN-LDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc-ccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999996 69999887777777789999999732211 1123447788999999998 8999999999999999
Q ss_pred HHHHHHHHhCCccc
Q 023335 256 FKFIMAKLFNLPWT 269 (283)
Q Consensus 256 f~~l~~~i~~~~~~ 269 (283)
|+.+++.+......
T Consensus 159 f~~l~~~~~~~~~~ 172 (187)
T cd04132 159 FDTAIEEALKKEGK 172 (187)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999876544
No 62
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.98 E-value=2.8e-31 Score=214.38 Aligned_cols=157 Identities=21% Similarity=0.406 Sum_probs=138.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
+||+++|++|||||||+ +++++.+. ...+|.+.++..+.+.++ +..+.+++|||+|+++|..++..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999 99999888 556688888877777777 778999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|||++++++|+.+..|+..+.....+.|+++|+||+|+. . ...+..+++..+++.++++++++||++|.|++++|
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~---~--~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL---D--QAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELF 155 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc---c--ccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999998877777779999999972 1 12334677888999999999999999999999999
Q ss_pred HHHHHH
Q 023335 257 KFIMAK 262 (283)
Q Consensus 257 ~~l~~~ 262 (283)
++|...
T Consensus 156 ~~l~~~ 161 (162)
T cd04106 156 EYLAEK 161 (162)
T ss_pred HHHHHh
Confidence 998754
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=5.3e-31 Score=215.42 Aligned_cols=162 Identities=23% Similarity=0.363 Sum_probs=136.8
Q ss_pred EEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
|+|+|++|||||||+ ++.++.|.. +.++.+.. ....+.+++..+.+.+|||+|++.|..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 689999999999999 999999984 44455444 456677889999999999999999999999999999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335 181 TSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNIN 251 (283)
Q Consensus 181 ~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 251 (283)
++++||+++. .|+..+..+.++.|+||||||+|+..... .....+..+++.++++.+++ .++++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999996 69999998877888899999999732110 00122447788899999997 899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 023335 252 VNKIFKFIMAKLFN 265 (283)
Q Consensus 252 v~~lf~~l~~~i~~ 265 (283)
|+++|+.+++.+++
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999998764
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.98 E-value=6.5e-31 Score=214.14 Aligned_cols=161 Identities=22% Similarity=0.380 Sum_probs=142.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+. ...++.|.++....+.+++..+.+.+||++|++++..+...+++++|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999 99999888 5556888888888888999899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||+++++||+++..|+.+++.+. ++.|++|||||.|+. .......+++..+++..++.++++||++++|++++|
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~ 158 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE-----SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAF 158 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999998875 455668999999972 122344677888899999999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
+++.+.+++
T Consensus 159 ~~~~~~~~~ 167 (168)
T cd01866 159 INTAKEIYE 167 (168)
T ss_pred HHHHHHHHh
Confidence 999998865
No 65
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.98 E-value=5.5e-31 Score=215.58 Aligned_cols=161 Identities=24% Similarity=0.355 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ ++.++.|...+++++.+.....+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 68999999999999999 99999998656655567777788889989999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335 180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATHNI 250 (283)
Q Consensus 180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 250 (283)
+++++||+++. .|+..+....++.|.++||||+||..... ...+.+..+++..+++..++ .|+++||++|.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~ 160 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQK 160 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 99999999985 79999987666667789999999732110 01234457889999999998 89999999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
||+++|+.++-
T Consensus 161 ~v~~lf~~~~~ 171 (173)
T cd04130 161 NLKEVFDTAIL 171 (173)
T ss_pred CHHHHHHHHHh
Confidence 99999998764
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.98 E-value=6.1e-31 Score=214.39 Aligned_cols=159 Identities=24% Similarity=0.391 Sum_probs=139.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+++||++|++++..++..+++++|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4699999999999999999 99999988 566788888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNI 250 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 250 (283)
|||+++++||+.+..|+.++..+.. +.|.+|||||+|+. .+....+++++++++++. +++++||++|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP------ERQVSTEEAQAWCRENGDYPYFETSAKDAT 157 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc------ccccCHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 9999999999999999998876532 33557999999961 233457788999998885 79999999999
Q ss_pred CHHHHHHHHHHHH
Q 023335 251 NVNKIFKFIMAKL 263 (283)
Q Consensus 251 ~v~~lf~~l~~~i 263 (283)
|++++|+++++.+
T Consensus 158 ~v~~~~~~~~~~~ 170 (170)
T cd04116 158 NVAAAFEEAVRRV 170 (170)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 67
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=7.4e-31 Score=218.45 Aligned_cols=166 Identities=24% Similarity=0.364 Sum_probs=144.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+|+|++|||||||+ +|+++.|. .+.+|.+.++..+.+.+++..+.+.+||++|++++..+...+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 58999999999999999 99999987 3556888888888899999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
||+++.++|+++..|++.+....++.|+++|+||+|+..... ....+..+++.+++..++++++++||++|.|++++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~ 159 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDR-SLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ 159 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEccccccccc-ccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999999999999988766677789999999732111 1123335678888888899999999999999999999
Q ss_pred HHHHHHhCCc
Q 023335 258 FIMAKLFNLP 267 (283)
Q Consensus 258 ~l~~~i~~~~ 267 (283)
++.+.+.+..
T Consensus 160 ~i~~~~~~~~ 169 (193)
T cd04118 160 KVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHhc
Confidence 9999987654
No 68
>PLN03110 Rab GTPase; Provisional
Probab=99.98 E-value=6.1e-31 Score=223.08 Aligned_cols=162 Identities=27% Similarity=0.459 Sum_probs=145.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +|+++.+. .+.+|.+.++..+.+.+++..+.+++||++|++++..++..++++++++|+
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999 99999988 667799999998999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||++++++|+++..|+..+...... .|+++||||+||. ..+....++++.++..++++++++||++|.|++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~l 165 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLN-----HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKA 165 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999887654 4557999999962 22334467888999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023335 256 FKFIMAKLFN 265 (283)
Q Consensus 256 f~~l~~~i~~ 265 (283)
|+++++.+.+
T Consensus 166 f~~l~~~i~~ 175 (216)
T PLN03110 166 FQTILLEIYH 175 (216)
T ss_pred HHHHHHHHHH
Confidence 9999998866
No 69
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=9e-31 Score=212.44 Aligned_cols=160 Identities=26% Similarity=0.447 Sum_probs=138.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ ++.++.+. ...+|.+.++..+.+.+++..+.+++|||+|++.+..++..+++++|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3689999999999999999 99999888 445677888888888889988999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~ 254 (283)
|||+++++||+.+..|+..+..... +.|+++|+||+|+. ..+....+++..+++.+++ .++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE-----EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 9999999999999999999987654 45568999999972 1223446778889998886 689999999999999
Q ss_pred HHHHHHHHH
Q 023335 255 IFKFIMAKL 263 (283)
Q Consensus 255 lf~~l~~~i 263 (283)
+|+++.+.+
T Consensus 157 ~~~~l~~~l 165 (165)
T cd01864 157 AFLLMATEL 165 (165)
T ss_pred HHHHHHHhC
Confidence 999998753
No 70
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=1.4e-30 Score=217.97 Aligned_cols=164 Identities=15% Similarity=0.204 Sum_probs=134.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACKD 170 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~ 170 (283)
+||+|+|++|||||||+ +++++.|. .+.||++.++....+.+++..+.+++|||+|.+.+... ...++++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999 99999988 56678887777777888999999999999997665322 2345789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEc
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSS 245 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~S 245 (283)
+|++|+|||+++++||+.+..|++.+.... .+.|+||||||+|+. . .+.+..++++.++. .++++|+++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ----R-HRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc----c-cccccHHHHHHHHHHhcCCcEEEec
Confidence 999999999999999999999999988763 445668999999962 2 22334556777754 5689999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCccc
Q 023335 246 ATHNINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~~~~ 269 (283)
|++|.||+++|+.+++.++.....
T Consensus 156 ak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 156 AKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876543
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.3e-30 Score=211.59 Aligned_cols=155 Identities=17% Similarity=0.260 Sum_probs=131.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.|. .+.+|.+..+ ...+..++..+.+++|||+|+++|..+...+++.+|++|+||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 79999999999999999 99999987 4455655443 456667788899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|+++++||+++..|++.+.... ++.|+++||||+|+. . .+....+++..++..+++.|+++||++|+|+++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES----H-KREVSSNEGAACATEWNCAFMETSAKTNHNVQE 155 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc----c-cCeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence 9999999999999998887653 345668999999962 1 233446677888888899999999999999999
Q ss_pred HHHHHHH
Q 023335 255 IFKFIMA 261 (283)
Q Consensus 255 lf~~l~~ 261 (283)
+|++|++
T Consensus 156 ~f~~l~~ 162 (165)
T cd04140 156 LFQELLN 162 (165)
T ss_pred HHHHHHh
Confidence 9999875
No 72
>PLN03108 Rab family protein; Provisional
Probab=99.97 E-value=1.9e-30 Score=219.15 Aligned_cols=164 Identities=21% Similarity=0.356 Sum_probs=144.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 3699999999999999999 99999888 556688999888888999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||+++.++|+.+..|+..+..... ..|.++|+||+||. ..+....++++++++.++++++++||+++.||+++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLA-----HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 9999999999999999998877654 44557999999962 22334577889999999999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 023335 256 FKFIMAKLFNLP 267 (283)
Q Consensus 256 f~~l~~~i~~~~ 267 (283)
|+++++.++++.
T Consensus 160 f~~l~~~~~~~~ 171 (210)
T PLN03108 160 FIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 73
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.9e-30 Score=209.97 Aligned_cols=158 Identities=16% Similarity=0.259 Sum_probs=134.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.+...+ +|++ +...+.+.+++..+.+++|||+|++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 59999999999999999 99999888444 4444 445667778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|++++++|+.+..|+..+.+.. .+.|.++||||+|+. + ......+++..+++.++++++++||++|.|++++|
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE----S-ERVVSTEEGKELARQWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHH
Confidence 9999999999999998887653 245668999999962 1 23344677888888899999999999999999999
Q ss_pred HHHHHHHh
Q 023335 257 KFIMAKLF 264 (283)
Q Consensus 257 ~~l~~~i~ 264 (283)
++|++.+.
T Consensus 155 ~~l~~~~~ 162 (164)
T smart00173 155 YDLVREIR 162 (164)
T ss_pred HHHHHHHh
Confidence 99998764
No 74
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.5e-30 Score=210.16 Aligned_cols=158 Identities=24% Similarity=0.398 Sum_probs=139.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+++||++|++.|..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 59999999999999999 99999987 56668888888888889998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|++++++|+++..|+.+++... ++.|.+||+||+|+. . ......+++..+++..++.++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~ 155 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA----D-QREVTFLEASRFAQENGLLFLETSALTGENVEEAFL 155 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----h-hccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 9999999999999999988765 455567999999962 1 233447788889999999999999999999999999
Q ss_pred HHHHHH
Q 023335 258 FIMAKL 263 (283)
Q Consensus 258 ~l~~~i 263 (283)
++++.+
T Consensus 156 ~~~~~~ 161 (161)
T cd04113 156 KCARSI 161 (161)
T ss_pred HHHHhC
Confidence 998753
No 75
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.6e-30 Score=212.16 Aligned_cols=159 Identities=27% Similarity=0.472 Sum_probs=139.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cchhhhcccCcEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAILF 176 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~ad~iil 176 (283)
.+||+++|++|||||||+ +++.+.+. .+.++.+.++..+.+.+++..+.+++||++|++.+. .++..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999 99999988 566688888888889999999999999999999886 578889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC---CcC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH---NIN 251 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~---~~~ 251 (283)
|||++++++|+.+..|++++..+. .+.|.++|+||+|+. ....+..+++.++++..+++|+++||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-----EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-----hhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence 999999999999999999998764 345668999999962 2233446778889999999999999999 999
Q ss_pred HHHHHHHHHHHH
Q 023335 252 VNKIFKFIMAKL 263 (283)
Q Consensus 252 v~~lf~~l~~~i 263 (283)
++++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 76
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.97 E-value=1.7e-30 Score=210.30 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+||+++|++|||||||+ ++..+ .+. ++.+|.|.++..+.+.++ +..+.+.+|||+|++.+..+...+++++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 59999999999999999 99865 566 556688899887777775 57799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
+|||++++++|+++..|++.+.....+.|.++||||+|+. + .......+++.++..++++++++||++|.|++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 155 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA---D--KAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEP 155 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc---c--ccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHH
Confidence 9999999999999999999998877666778999999962 1 1223355667778888899999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|+.+++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04101 156 FESLARAF 163 (164)
T ss_pred HHHHHHHh
Confidence 99998865
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=3.1e-30 Score=208.48 Aligned_cols=158 Identities=16% Similarity=0.228 Sum_probs=134.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+.. ..+|++.. ......+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 489999999999999999 999988874 44455543 455677888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||+++.++|+.+..|+..+.+.. .+.|++||+||+|+. . ......+++.++++.++++++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE----H-QRKVSREEGQELARKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc----c-cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHH
Confidence 99999999999999999988753 345668999999962 1 1223456788889988999999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|+++++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998764
No 78
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.97 E-value=3.7e-31 Score=216.04 Aligned_cols=169 Identities=21% Similarity=0.296 Sum_probs=148.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
..+|++|||+.++|||+|+ .+..+.|. ++.||.. +-+...+.++ |+.+.+.+|||+||+.|..+++..|.++|+|+
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 4799999999999999999 99999999 5555554 6667788895 99999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC------C-CcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP------P-DLQWTIATQARAYAKAMKA-TLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~------~-~~~~~~~~~~~~~~~~~~~-~~~e~Sa 246 (283)
+||++.+++||+++. +|+.++++++++.|+||||+|.||..+.. . ....+..++++++|++.|+ .|+|+||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 999999999999985 89999999999999999999999853210 0 1123458899999999995 7999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcc
Q 023335 247 THNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
+++.|++++|+..+..++..+.
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999988765
No 79
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=8.5e-30 Score=215.29 Aligned_cols=167 Identities=26% Similarity=0.443 Sum_probs=143.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+|+|++|||||||+ +++++.+....++.+.++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 4799999999999999999 999988877777888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHH-HHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 178 FDLTSRCTLNSIVG-WYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~~s~~~~~~-~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
||++++++|+++.. |...+..+.. +.+++|||||+|+. . ......++...+++.+++.|+++||++|.|+++
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~----~-~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE----S-ERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc----c-cCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999975 7777765532 34568999999962 1 122346777888888999999999999999999
Q ss_pred HHHHHHHHHhCCcccc
Q 023335 255 IFKFIMAKLFNLPWTV 270 (283)
Q Consensus 255 lf~~l~~~i~~~~~~~ 270 (283)
+|++|.+.+.+.+...
T Consensus 168 l~~~l~~~~~~~~~~~ 183 (211)
T PLN03118 168 CFEELALKIMEVPSLL 183 (211)
T ss_pred HHHHHHHHHHhhhhhh
Confidence 9999999998877433
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=6.1e-30 Score=206.65 Aligned_cols=160 Identities=26% Similarity=0.486 Sum_probs=140.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++.+..+. ...++.+.++....+.+++..+.+++||++|++.+..+...+++.+|++|+||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 59999999999999999 99999887 55678888888888889998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|+++.++++.+..|+..+..+. ++.|.++|+||+|+. . ......+.++++++.++++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~ 155 (164)
T smart00175 81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE----D-QRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFE 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc----c-ccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998876 455557999999962 1 123346678888888999999999999999999999
Q ss_pred HHHHHHhC
Q 023335 258 FIMAKLFN 265 (283)
Q Consensus 258 ~l~~~i~~ 265 (283)
++.+.+.+
T Consensus 156 ~i~~~~~~ 163 (164)
T smart00175 156 ELAREILK 163 (164)
T ss_pred HHHHHHhh
Confidence 99998864
No 81
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=1.1e-29 Score=207.59 Aligned_cols=164 Identities=17% Similarity=0.280 Sum_probs=136.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ +++++.+...+.++..+.....+.+++..+.+.+|||+|++.|..++..+++++|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 59999999999999999 99999988444434344455677888889999999999999999999999999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335 180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHNI 250 (283)
Q Consensus 180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 250 (283)
++++++|+++. .|++.+....++.|+++||||+||...-.. ....+..+++..+++.+++ +++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 160 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQK 160 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCC
Confidence 99999999996 799998877667777899999997321100 0123446788999999986 79999999999
Q ss_pred CHHHHHHHHHHHHh
Q 023335 251 NVNKIFKFIMAKLF 264 (283)
Q Consensus 251 ~v~~lf~~l~~~i~ 264 (283)
||+++|+.+++.++
T Consensus 161 gi~~~f~~~~~~~~ 174 (174)
T cd04135 161 GLKTVFDEAILAIL 174 (174)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=9.2e-30 Score=205.25 Aligned_cols=157 Identities=24% Similarity=0.450 Sum_probs=139.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++++..+. .+.++.+.++..+.+.+++..+.+++||++|++++..+...+++++|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999 99999988 66778899999999999998899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|++++++|+.+..|+..+..... +.|.++|+||+|+. .......++...+++..++.++++||+++.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 155 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS-----DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFR 155 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc-----ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999877654 45668999999962 2233446778888888899999999999999999999
Q ss_pred HHHHH
Q 023335 258 FIMAK 262 (283)
Q Consensus 258 ~l~~~ 262 (283)
++.+.
T Consensus 156 ~i~~~ 160 (161)
T cd01861 156 KIASA 160 (161)
T ss_pred HHHHh
Confidence 99875
No 83
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=8.3e-30 Score=219.87 Aligned_cols=157 Identities=17% Similarity=0.262 Sum_probs=132.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +|+++.|... .+|++ ++..+.+.+++..+.++||||+|++.|..+...++.++|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 58999999999999999 9999999844 45554 677788889999999999999999999988888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhH----------CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023335 179 DLTSRCTLNSIVGWYSEARKW----------NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT 247 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~----------~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~ 247 (283)
|+++++||+++..|++++... ..+.|.||||||+|+. . ...+..+++.+++.. .++.++++||+
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~----~-~~~v~~~ei~~~~~~~~~~~~~evSAk 154 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD----F-PREVQRDEVEQLVGGDENCAYFEVSAK 154 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch----h-ccccCHHHHHHHHHhcCCCEEEEEeCC
Confidence 999999999999999998754 1345668999999972 1 123446667776654 46789999999
Q ss_pred CCcCHHHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMAKL 263 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i 263 (283)
+|.||+++|++|++.+
T Consensus 155 tg~gI~elf~~L~~~~ 170 (247)
T cd04143 155 KNSNLDEMFRALFSLA 170 (247)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999865
No 84
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=8.4e-30 Score=206.74 Aligned_cols=157 Identities=17% Similarity=0.310 Sum_probs=130.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCcEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~iilv~ 178 (283)
||+++|++|||||||+ +++.+.+...+ ++++.. ..+.+.+++..+.+++||++|++. +......+++.+|++|+||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 6999999999999999 99998887444 454433 356677889999999999999986 3456777899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC-cCHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN-INVNK 254 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~~v~~ 254 (283)
|+++++||+.+..|+..+..... +.|.++||||+|+. ....+..+++.++++..+++|+++||++| .||++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-----HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-----HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHH
Confidence 99999999999999998887642 56668999999962 12233467788899999999999999999 59999
Q ss_pred HHHHHHHHHh
Q 023335 255 IFKFIMAKLF 264 (283)
Q Consensus 255 lf~~l~~~i~ 264 (283)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 85
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=1.7e-29 Score=204.04 Aligned_cols=159 Identities=29% Similarity=0.471 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|++|||||||+ +++++.+.. ..++.+.++..+.+.+++..+.+.+||++|++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999 999999884 677888888888999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||+++.++|+.+..|+..+.... +..|.++++||+|+. + ......++...+++.+++.++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 155 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE----S-KRQVSTEEAQEYADENGLLFFETSAKTGENVNELF 155 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-cCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999998876 345557999999962 1 22334667788888889999999999999999999
Q ss_pred HHHHHHH
Q 023335 257 KFIMAKL 263 (283)
Q Consensus 257 ~~l~~~i 263 (283)
++|++.+
T Consensus 156 ~~l~~~l 162 (163)
T cd01860 156 TEIAKKL 162 (163)
T ss_pred HHHHHHh
Confidence 9999876
No 86
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=1.3e-29 Score=206.99 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=135.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
..+||+++|++|||||||+ +|+++.|. ++.+|++.++..+.+.+++..+.+.+||++|++.+..+...+++++|+++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4689999999999999999 99999986 44568888887788888998899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+... .+.|.++|+||+||. +. ......+..++++.+++ .++++||++|.|+++
T Consensus 83 lv~d~~~~~s~~~~~~~~~~~~~~-~~~p~iiv~NK~Dl~----~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T cd01892 83 LVYDSSDPKSFSYCAEVYKKYFML-GEIPCLFVAAKADLD----EQ-QQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNE 156 (169)
T ss_pred EEEeCCCHHHHHHHHHHHHHhccC-CCCeEEEEEEccccc----cc-ccccccCHHHHHHHcCCCCCEEEEeccCccHHH
Confidence 999999999999999999876432 245668999999962 11 22223456677888887 469999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|+.+++.+.+
T Consensus 157 lf~~l~~~~~~ 167 (169)
T cd01892 157 LFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHhhC
Confidence 99999998764
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=4.4e-29 Score=203.24 Aligned_cols=159 Identities=18% Similarity=0.251 Sum_probs=134.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++||+++|.+|||||||+ ++.++.+.. +.+|++.. ..+.+.+++..+.+++|||+|+++|..+++.+++.++++++|
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv 79 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV 79 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence 479999999999999999 999999874 44455544 467778889899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~ 254 (283)
||++++++|+.+..|.+.+.+.. .+.|.++++||.|+. . .+....++...+++.++ ++++++||++|.|+++
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~ 154 (168)
T cd04177 80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE----D-DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDE 154 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc----c-cCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHH
Confidence 99999999999999999987642 345667999999962 1 22334566778888888 7899999999999999
Q ss_pred HHHHHHHHHh
Q 023335 255 IFKFIMAKLF 264 (283)
Q Consensus 255 lf~~l~~~i~ 264 (283)
+|+++++.++
T Consensus 155 ~f~~i~~~~~ 164 (168)
T cd04177 155 VFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 88
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.97 E-value=2e-29 Score=209.62 Aligned_cols=162 Identities=17% Similarity=0.241 Sum_probs=144.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|.+|||||+|+ +|+.+.|.+.|.++..+.+.+.+.+++..+.+.|+||+|+++|..+...+++++|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 3689999999999999999 999999996666555588899999999999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH-CCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW-NQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~-~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|+++++.||+.+..+++.|.+. ..+. |.|+||||+||. ..+.+..++++.++..++++|+|+||+.+.||+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-----~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~ 156 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-----RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEV 156 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-----hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHH
Confidence 9999999999999999999543 2233 558999999972 23566699999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 023335 256 FKFIMAKLFN 265 (283)
Q Consensus 256 f~~l~~~i~~ 265 (283)
|..|++.+-.
T Consensus 157 F~~L~r~~~~ 166 (196)
T KOG0395|consen 157 FYELVREIRL 166 (196)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 89
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.7e-29 Score=201.23 Aligned_cols=156 Identities=24% Similarity=0.455 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++.++.+. ...++.+.++....+.+++..+.+.+||++|++.+..+...+++++|++++||
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 59999999999999999 99999887 56678888887777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|+++.++|+.+..|++.+..+. .+.|.++||||+|+. ......++..++++..+++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE------NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc------ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHH
Confidence 9999999999999999998874 345558999999962 22334677888899999999999999999999999
Q ss_pred HHHHHH
Q 023335 257 KFIMAK 262 (283)
Q Consensus 257 ~~l~~~ 262 (283)
+++++.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 90
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=3.6e-29 Score=212.88 Aligned_cols=160 Identities=17% Similarity=0.216 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc-cCcEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK-DAVAILF 176 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-~ad~iil 176 (283)
+||+++|++|||||||+ +|+++.+. ..++ +.+.++..+.+.+++..+.+.+|||+|++. .....+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999 99988886 5554 444577788889999999999999999982 34455667 9999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||+++++||+.+..|+..+.... .+.|+|+|+||+|+. . ...+..+++.+++..++++|+++||++|.||++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~----~-~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA----R-SREVSVQEGRACAVVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc----c-cceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 999999999999999999998764 356678999999962 1 233446677888998999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|+++++.+....
T Consensus 154 l~~~l~~~~~~~~ 166 (221)
T cd04148 154 LLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999886444
No 91
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.97 E-value=5.8e-29 Score=202.61 Aligned_cols=161 Identities=24% Similarity=0.371 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ ++.++.+. ...++.+.++..+.+.+++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999 99999887 55567788888888889999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCC-----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQ-----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV 252 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~-----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 252 (283)
|++++++|+++..|.+.+..... +.|+++|+||+|+. . ......++...+++..+ .+++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE---E--KRQVSTKKAQQWCQSNGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc---c--ccccCHHHHHHHHHHcCCceEEEEECCCCCCH
Confidence 99999999999999988766543 45668999999972 1 12234666778888887 78999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|+++.+.+++.
T Consensus 156 ~~l~~~i~~~~~~~ 169 (172)
T cd01862 156 EQAFETIARKALEQ 169 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988775
No 92
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=6.3e-29 Score=203.32 Aligned_cols=162 Identities=21% Similarity=0.309 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.||+++|++|||||||+ ++.++.|.+ +.+|.+..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 59999999999999999 999999884 445665444 356778888999999999999999998888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC-------CcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP-------DLQWTIATQARAYAKAMKA-TLFFSSATHN 249 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~-------~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 249 (283)
|++++++|+++. .|+..+++..++.|+++|+||+|+...... ....+...+++++++..+. .++++||++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 999999999985 699999887777778899999997321100 0112335778888888875 7999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023335 250 INVNKIFKFIMAKL 263 (283)
Q Consensus 250 ~~v~~lf~~l~~~i 263 (283)
.|++++|++|.+.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998764
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=1.7e-28 Score=203.48 Aligned_cols=167 Identities=22% Similarity=0.281 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.||+|+|++|||||||+ ++..+.+. ...+|.+..+ ...+.+++..+.+.+||++|++.+....+.+++++|++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 59999999999999999 99988887 4444555444 346677888899999999999998888888899999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-----cccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAKAMKA-TLFFSSATHNIN 251 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-----~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 251 (283)
|+++.++|+.+. .|++.+....++.|+|+||||+|+....... .+.+..+++..+++.+++ +||++||++|.|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 160 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG 160 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence 999999999996 6999998887777778999999973221111 223346778899999985 899999999999
Q ss_pred HHHHHHHHHHHHhCCcc
Q 023335 252 VNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~~ 268 (283)
|+++|+++.+.++....
T Consensus 161 v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 161 VDDVFEAATRAALLVRK 177 (187)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 99999999988876553
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=1.6e-28 Score=197.67 Aligned_cols=158 Identities=27% Similarity=0.486 Sum_probs=136.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|.+|||||||+ +++++.+. ...++++.++....+.+.+..+.+.+||++|++.+..+++.+++++|++++||
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999 99999887 44556667777777888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|+++.++++.+..|++++...... .|+++|+||+|+. .......++..++++..+++++++||++++|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~ 155 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLE-----RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFL 155 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999999999887654 4557999999962 1223346677788888899999999999999999999
Q ss_pred HHHHHH
Q 023335 258 FIMAKL 263 (283)
Q Consensus 258 ~l~~~i 263 (283)
++.+.+
T Consensus 156 ~l~~~~ 161 (162)
T cd04123 156 SLAKRM 161 (162)
T ss_pred HHHHHh
Confidence 998865
No 95
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=2.6e-28 Score=198.40 Aligned_cols=160 Identities=24% Similarity=0.426 Sum_probs=137.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ ++.++.+. ...++.+.++..+.+.+++..+.+.+||++|++.+......+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4699999999999999999 99988877 556688888888888999999999999999999999888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||+++.++|+.+..|+.+++..... .|.++|+||+|+. . ......+..+.+.+.....++++||++|.|++++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~----~-~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLA----E-RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc----c-ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 99999999999999999999887654 4448999999962 1 2233355567777777888999999999999999
Q ss_pred HHHHHHHH
Q 023335 256 FKFIMAKL 263 (283)
Q Consensus 256 f~~l~~~i 263 (283)
|++|.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99999865
No 96
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.96 E-value=7.2e-29 Score=202.34 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++..+.+....||+|.++. .+.. ..+.+++|||+|++++..+++.+++++|++|+|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v 83 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 83 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999 9998888776778887764 3333 457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 250 (283)
||++++.+|+++..|+.++... .++.|.+||+||+|+. . ....++++++++ ...+.++++||++|.
T Consensus 84 ~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~ 156 (168)
T cd04149 84 VDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLP----D---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGD 156 (168)
T ss_pred EeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCc----c---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCC
Confidence 9999999999998887776543 2456668999999962 1 122445555432 123468899999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
||+++|++|.+
T Consensus 157 gv~~~~~~l~~ 167 (168)
T cd04149 157 GLYEGLTWLSS 167 (168)
T ss_pred ChHHHHHHHhc
Confidence 99999999864
No 97
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=5.7e-28 Score=194.95 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=134.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++.+.+...+ ++++ +...+...+++..+.+.+||++|++.+..++..+++.++++++||
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 58999999999999999 99999888444 4544 344566778888999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|++++++|+++..|+..+.... .+.|+++|+||+|+. . ......++...+++.++++++++||++|.|++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE---D--KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc---c--ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHH
Confidence 9999999999999999888763 356668999999962 1 12233566777888889999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
+++.+.+.+
T Consensus 155 ~~l~~~~~~ 163 (164)
T cd04139 155 YDLVREIRQ 163 (164)
T ss_pred HHHHHHHHh
Confidence 999987753
No 98
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.5e-28 Score=196.45 Aligned_cols=161 Identities=20% Similarity=0.284 Sum_probs=126.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ ++.++.+...++++..++ .....+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 48999999999999999 999999875555443333 3444567788999999999999888888888899999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHH
Q 023335 180 LTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 180 ~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf 256 (283)
++++++|+.+. .|++.++...++.|+++|+||+|+. +........+++..+++.++ ..++++||++|.|++++|
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLR---DGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcc---cccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence 99999999985 7999888776666778999999972 11111112344444444443 379999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
+.+.+.+..
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988764
No 99
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=9.7e-28 Score=203.27 Aligned_cols=167 Identities=23% Similarity=0.357 Sum_probs=143.4
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
......+||+++|++|||||||+ +++.+.+. .+.+|.+.++....+..++..+.+++|||+|++.|..++..++++++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 34445799999999999999999 99999887 66678899988888888889999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++++|||+++..||..+..|+..+.....+.|++++|||+|+. + ... ..+...+++..++.++++||++|.|+
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~----~--~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v 156 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVK----D--RQV-KARQITFHRKKNLQYYDISAKSNYNF 156 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc----c--ccC-CHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 9999999999999999999999998877666667899999962 1 112 22334577788899999999999999
Q ss_pred HHHHHHHHHHHhCCcc
Q 023335 253 NKIFKFIMAKLFNLPW 268 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~ 268 (283)
+++|.+|++.+...+.
T Consensus 157 ~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 157 EKPFLWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999999987764
No 100
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2e-28 Score=199.79 Aligned_cols=156 Identities=17% Similarity=0.199 Sum_probs=126.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
||+++|++|||||||+ ++.++.+..+.+|.+.++. .+.+ ..+.+++|||+|++.+..++..+++++|++++|||+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 6899999999999999 9999887776778777664 3333 457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCH
Q 023335 181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK------ATLFFSSATHNINV 252 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v 252 (283)
+++++|+++..|+.++.... .+.|++||+||+||. . ....++++++++..+ +.++++||++|.||
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVA----G---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcc----c---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCH
Confidence 99999999999998887542 245668999999962 1 233555666554322 25778999999999
Q ss_pred HHHHHHHHHHHhCCcc
Q 023335 253 NKIFKFIMAKLFNLPW 268 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~ 268 (283)
+++|++|.+.+.+.++
T Consensus 150 ~~~f~~l~~~~~~~~~ 165 (169)
T cd04158 150 YEGLDWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHHHHHhhccc
Confidence 9999999998877654
No 101
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=2.7e-28 Score=197.07 Aligned_cols=151 Identities=17% Similarity=0.217 Sum_probs=117.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ ++..+.+..+.||+|.++. .+.. ..+.+++||++|++++..++..+++++|++|+|||
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 48999999999999999 9988888877778887653 3333 45789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHH
Q 023335 180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVN 253 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~ 253 (283)
++++++|+++..|+..+... ..+.|++|++||+||.. . ....+....+. ...++.++++||++|+||+
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~ 150 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN----A--MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLY 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC----C--CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHH
Confidence 99999999998888777543 23456689999999621 1 11112222221 1223456789999999999
Q ss_pred HHHHHHHH
Q 023335 254 KIFKFIMA 261 (283)
Q Consensus 254 ~lf~~l~~ 261 (283)
++|++|.+
T Consensus 151 ~~~~~l~~ 158 (159)
T cd04150 151 EGLDWLSN 158 (159)
T ss_pred HHHHHHhc
Confidence 99999864
No 102
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=2e-28 Score=200.96 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=120.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++..+.+..+.||++.++.. +.. ..+.+++|||+|++.+..++..|++++|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 3689999999999999999 99888887667788877643 333 357899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 250 (283)
||++++++++++..|+..+... ..+.|++|||||+||.+.. ..+++.+.. +...+.++++||++|.
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM-------KAAEITEKLGLHSIRDRNWYIQPTCATSGD 160 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC-------CHHHHHHHhCccccCCCcEEEEEeeCCCCC
Confidence 9999999999999888877543 2345668999999972211 112222111 1223346689999999
Q ss_pred CHHHHHHHHHHHHh
Q 023335 251 NVNKIFKFIMAKLF 264 (283)
Q Consensus 251 ~v~~lf~~l~~~i~ 264 (283)
||+++|++|.+.+.
T Consensus 161 gv~e~~~~l~~~~~ 174 (175)
T smart00177 161 GLYEGLTWLSNNLK 174 (175)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999987753
No 103
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=3e-28 Score=201.05 Aligned_cols=154 Identities=18% Similarity=0.217 Sum_probs=121.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++..+.+..+.||.|.++. .+.. ..+.+++||++|++++..++..+++++|++|+|
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~--~~~~--~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V 91 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 91 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999 9998888766678887653 3333 457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSAT 247 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa~ 247 (283)
||++++++++++..|+..+... .++.|++|||||+|+.. . ...++ +.+..++ .++++||+
T Consensus 92 ~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~----~---~~~~~---~~~~l~l~~~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 92 VDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPN----A---MNAAE---ITDKLGLHSLRQRHWYIQSTCAT 161 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCC----C---CCHHH---HHHHhCccccCCCceEEEeccCC
Confidence 9999999999988777776432 23556689999999622 1 11222 3333333 35579999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|+||+++|++|.+.+.++
T Consensus 162 ~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 162 SGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCHHHHHHHHHHHHhhc
Confidence 9999999999999988654
No 104
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.9e-27 Score=193.50 Aligned_cols=160 Identities=21% Similarity=0.335 Sum_probs=131.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|++|||||||+ +++++.+. .+.++.. +.....+..++..+.+++||++|++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 69999999999999999 99999986 4444443 444556677888999999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC------cccchHHHHHHHHHHcCC-cEEEEcCCCCc
Q 023335 179 DLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAYAKAMKA-TLFFSSATHNI 250 (283)
Q Consensus 179 D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~------~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~ 250 (283)
|++++++|.... .|+..+..+..+.|.++||||+|+....... ......+++.+++..+++ +++++||++|+
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 999999998875 6999888887777779999999973221110 012236778888888888 89999999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
|++++|++|++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=1.6e-27 Score=190.37 Aligned_cols=155 Identities=26% Similarity=0.494 Sum_probs=137.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+||+++|.+|||||||+ ++.++.+. .+.+|.+.++....+.+++..+.+.+||++|++.+......+++++|++++||
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999 99999988 55678899998889999888899999999999999899999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
|++++++++.+..|+..+.... ...|.++|+||+|+. .......++..+++...+++++++||+++.|++++|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-----~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~ 155 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE-----DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQ 155 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc-----ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 9999999999999999998887 455668999999962 1233447788888888899999999999999999999
Q ss_pred HHH
Q 023335 258 FIM 260 (283)
Q Consensus 258 ~l~ 260 (283)
+|.
T Consensus 156 ~i~ 158 (159)
T cd00154 156 SLA 158 (159)
T ss_pred HHh
Confidence 986
No 106
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=1.9e-28 Score=199.00 Aligned_cols=151 Identities=14% Similarity=0.120 Sum_probs=123.3
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
|+++|++|||||||+ +++++.+. .+.||.|.+. ..+++..+.+.+||++|+++|..++..+++++|++|+|||+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 799999999999999 99998877 5566777653 33455678899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-h--HHHHHHHHHHcCCcEEEEcCCC------CcC
Q 023335 181 TSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-I--ATQARAYAKAMKATLFFSSATH------NIN 251 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~-~--~~~~~~~~~~~~~~~~e~Sa~~------~~~ 251 (283)
++..+|..++.|+.++....++.|+++||||+|+.. ..... . ..++..++++.++.++++||++ ++|
T Consensus 78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~ 153 (164)
T cd04162 78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPA----ARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEA 153 (164)
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcC----CCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHH
Confidence 999999999999998876556667789999999632 11110 1 1235667777788899988888 999
Q ss_pred HHHHHHHHHH
Q 023335 252 VNKIFKFIMA 261 (283)
Q Consensus 252 v~~lf~~l~~ 261 (283)
|+++|+.++.
T Consensus 154 v~~~~~~~~~ 163 (164)
T cd04162 154 VKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=2.2e-27 Score=198.57 Aligned_cols=163 Identities=15% Similarity=0.211 Sum_probs=132.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
||+++|++|||||||+ +++++.+...+..+..++..+.+.+++..+.+++||++|++.|..++..+++++|++|+|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 7999999999999999 999999885444333356667788888889999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCCcCHHHHHH
Q 023335 181 TSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
++.++|+.+..|+..+..... +.|.|||+||+|+. + .......++..+.+. ..++.++++||++|.|++++|+
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~---~-~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 156 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL---E-EERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFK 156 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc---c-ccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHH
Confidence 999999999999999887743 45668999999962 2 112222333333333 4567899999999999999999
Q ss_pred HHHHHHhCCcc
Q 023335 258 FIMAKLFNLPW 268 (283)
Q Consensus 258 ~l~~~i~~~~~ 268 (283)
++++.+...++
T Consensus 157 ~l~~~~~~~~~ 167 (198)
T cd04147 157 ELLRQANLPYN 167 (198)
T ss_pred HHHHHhhcccc
Confidence 99998865554
No 108
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=5e-28 Score=200.05 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=132.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ ++..+.+....+|.|.++....+.+ ++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 689999999999999999 9999888866788887776666655 44678999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------cCCcEEEEcCCCC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------MKATLFFSSATHN 249 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------~~~~~~e~Sa~~~ 249 (283)
||+++.++++.+..|+.++.... .+.|.+||+||+|+. .. ...++...++.. .+++++++||++|
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~ 155 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP----NA---LSVSEVEKLLALHELSASTPWHVQPACAIIG 155 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc----cc---CCHHHHHHHhCccccCCCCceEEEEeecccC
Confidence 99999999999999998887653 345668999999962 11 112333333321 1245789999999
Q ss_pred cCHHHHHHHHHHHHhCCcccccc
Q 023335 250 INVNKIFKFIMAKLFNLPWTVKR 272 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~~~~~~~ 272 (283)
.|++++|++|.+.+.+.....++
T Consensus 156 ~gi~~l~~~l~~~l~~~~~~~~~ 178 (183)
T cd04152 156 EGLQEGLEKLYEMILKRRKMLRQ 178 (183)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999766554443
No 109
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=2e-27 Score=198.93 Aligned_cols=149 Identities=21% Similarity=0.276 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-----CeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-----GARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
+||+++|+++||||||+ +++++.|. .+.+|+|.++..+.+.++ +..+.+++|||+|+++|..++..||+++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999 99999998 566688988877777764 578999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHC--------------------CCCceEEEeecCCCCCCCCCCcccchHHHHHHH
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWN--------------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 233 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~--------------------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~ 233 (283)
+|+|||+++++||+++..|++++.... .+.|+||||||+||..+- .............+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r-~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK-ESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc-ccchHHHhhHhhhH
Confidence 999999999999999999999997642 234557999999972110 00011123345677
Q ss_pred HHHcCCcEEEEcCCCCc
Q 023335 234 AKAMKATLFFSSATHNI 250 (283)
Q Consensus 234 ~~~~~~~~~e~Sa~~~~ 250 (283)
|++.+++.++.++.+..
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 89999999998887443
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.3e-28 Score=198.93 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=120.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++..+.+....||.+.++. .+.. ..+.+++|||+|++.+..++..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 3689999999999999999 9988888776678887654 3333 457899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHH-HHH----HHHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAY----AKAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-~~~----~~~~~~~~~e~Sa~~~~ 250 (283)
||++++++|+++..|+.++... ..+.|.+||+||.|+. .. ...+++ ..+ ++...+.++++||++|+
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~----~~---~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~ 164 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLP----NA---MSTTEVTEKLGLHSVRQRNWYIQGCCATTAQ 164 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCC----CC---CCHHHHHHHhCCCcccCCcEEEEeeeCCCCC
Confidence 9999999999998777766432 2345668999999962 11 111222 111 11122346689999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 023335 251 NVNKIFKFIMAKLFNL 266 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~ 266 (283)
|++++|++|.+.+..+
T Consensus 165 gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 165 GLYEGLDWLSANIKKS 180 (182)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877653
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=4.3e-27 Score=188.89 Aligned_cols=156 Identities=20% Similarity=0.337 Sum_probs=133.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
||+++|++|||||||+ +++++.+. ...++++ +...+.+.+++..+.+++||++|++.+..+...+++++|++++|||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 7999999999999999 99988877 4444555 5666777788888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
+++.++++++..|+..+..... ..|.++|+||+|+. . ......+++..+++.++++++++||+++.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~----~-~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE----N-ERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc----c-cceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Confidence 9999999999999999888765 55668999999962 1 233446788888898889999999999999999999
Q ss_pred HHHHHH
Q 023335 258 FIMAKL 263 (283)
Q Consensus 258 ~l~~~i 263 (283)
+|++.+
T Consensus 155 ~l~~~i 160 (160)
T cd00876 155 LLVREI 160 (160)
T ss_pred HHHhhC
Confidence 998753
No 112
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.95 E-value=1e-26 Score=191.26 Aligned_cols=164 Identities=18% Similarity=0.246 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.||+++|.+|||||||+ ++.++.+. ...+|++..+ ...+.+++..+.+++||++|+++|..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 68999999999999999 99999887 4555655444 466677888889999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|+++.++|+.+..|+..+.... .+.|.|+|+||+|+. . ......++...+++.++++++++||+++.|+.++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH----T-QRQVSTEEGKELAESWGAAFLESSARENENVEEAF 155 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh----h-cCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999988887753 345678999999962 1 12233556777888888999999999999999999
Q ss_pred HHHHHHHhCCcccc
Q 023335 257 KFIMAKLFNLPWTV 270 (283)
Q Consensus 257 ~~l~~~i~~~~~~~ 270 (283)
+++.+.+...+...
T Consensus 156 ~~l~~~~~~~~~~~ 169 (180)
T cd04137 156 ELLIEEIEKVENPL 169 (180)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999987765443
No 113
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=8.4e-27 Score=208.85 Aligned_cols=205 Identities=17% Similarity=0.141 Sum_probs=153.2
Q ss_pred hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeE----EEEEcCCCCcHHHhH
Q 023335 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLK----ISLLGDCQIGKTSFV 117 (283)
Q Consensus 42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~K----I~vlG~~~vGKSSLi 117 (283)
--+++++|.||+||.+|.++.++... +|..+..|.++ +...-..++| |.|||.||||||||+
T Consensus 110 ~~~~~~~a~gg~gg~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~~adVglVG~PNaGKSTLl 175 (335)
T PRK12299 110 HGQRFLVAKGGKGGLGNAHFKSSTNR-----APRYATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLI 175 (335)
T ss_pred CCcEEEEecCCCCcCCchhhccccCC-----CCccccCCCCC---------cEEEEEEEEcccCCEEEEcCCCCCHHHHH
Confidence 35789999999999999888877665 47777777666 3333333444 679999999999999
Q ss_pred -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhh---cccCcEEEEEEECCChhhHHH
Q 023335 118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIA---CKDAVAILFMFDLTSRCTLNS 188 (283)
Q Consensus 118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~~ad~iilv~D~~~~~s~~~ 188 (283)
++.+.+.. ..++.++.......+.+.+ ...+.+||+||..+ ...+...| +++++++|+|+|+++.+++++
T Consensus 176 n~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~ 254 (335)
T PRK12299 176 SAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVED 254 (335)
T ss_pred HHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHH
Confidence 99887655 6677555555555666532 23578999999643 22344444 457999999999999889999
Q ss_pred HHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 189 IVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 189 ~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+..|.+++..+.+ +.|.+||+||+|+. +. .....+..+.+++..+.+++++||++++||+++|++|.+.+.+
T Consensus 255 ~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~---~~--~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 255 YKTIRNELEKYSPELADKPRILVLNKIDLL---DE--EEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred HHHHHHHHHHhhhhcccCCeEEEEECcccC---Cc--hhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 9999999998854 45668999999962 11 1122334555566677899999999999999999999988765
Q ss_pred C
Q 023335 266 L 266 (283)
Q Consensus 266 ~ 266 (283)
.
T Consensus 330 ~ 330 (335)
T PRK12299 330 A 330 (335)
T ss_pred h
Confidence 3
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=8.6e-27 Score=190.70 Aligned_cols=152 Identities=19% Similarity=0.216 Sum_probs=120.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++.+..+....+|.|... ..+.++ .+.+++|||+|++.+..++..+++++|++++|
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4689999999999999999 999886656666777543 345555 47789999999999988999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 250 (283)
||++++.+|+++..|+..+... ..+.|++||+||+|+.. . ...+++.++.+ ..+++++++||++|.
T Consensus 89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 161 (173)
T cd04154 89 VDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG----A---LSEEEIREALELDKISSHHWRIQPCSAVTGE 161 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccccc----C---CCHHHHHHHhCccccCCCceEEEeccCCCCc
Confidence 9999999999998888887543 24566689999999621 1 12344444442 345689999999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
|++++|++++.
T Consensus 162 gi~~l~~~l~~ 172 (173)
T cd04154 162 GLLQGIDWLVD 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 115
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=9.7e-27 Score=187.46 Aligned_cols=154 Identities=17% Similarity=0.228 Sum_probs=117.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
||+++|++|||||||+ ++.++.+....+|.+.++. .+..+ ..+.+.+||++|++.+...+..+++++|++|+|||+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE--MLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE--EEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 6899999999999999 9999988766777776543 33333 457899999999999988899999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHH--HHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQ--ARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~--~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
++..++..+..|+.++.+.. .+.|.++|+||+|+... ......... ...++...++.++++||++|+||+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA---LTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC---cCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 99999999988888876532 35566899999996211 111111111 122223334568999999999999999
Q ss_pred HHHHH
Q 023335 257 KFIMA 261 (283)
Q Consensus 257 ~~l~~ 261 (283)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 116
>PLN00023 GTP-binding protein; Provisional
Probab=99.94 E-value=3.9e-26 Score=200.53 Aligned_cols=141 Identities=24% Similarity=0.339 Sum_probs=118.3
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-------------eEEEEEEEeCCCCCCc
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-------------ARIAFSIWDVGGDSRS 160 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~ 160 (283)
.....+||+|+|+.|||||||+ +|+++.|. .+.+|+|.++..+.+.+++ ..+.++||||+|+++|
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3445799999999999999999 99999998 5567999998878777652 5688999999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-------------CCceEEEeecCCCCCCCCCCc-cc--
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-------------TAIPILIGTKFDDFVRLPPDL-QW-- 224 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-------------~~~~ilvgnK~DL~~~l~~~~-~~-- 224 (283)
..++..|+++++++|+|||+++++||+++..|++++..... +.|+||||||+||. .... +.
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~---~~~~~r~~s 173 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIA---PKEGTRGSS 173 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccc---ccccccccc
Confidence 99999999999999999999999999999999999987631 24557999999972 2111 11
Q ss_pred -chHHHHHHHHHHcCC
Q 023335 225 -TIATQARAYAKAMKA 239 (283)
Q Consensus 225 -~~~~~~~~~~~~~~~ 239 (283)
+..+++++||+++++
T Consensus 174 ~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 174 GNLVDAARQWVEKQGL 189 (334)
T ss_pred cccHHHHHHHHHHcCC
Confidence 247899999999884
No 117
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=2.1e-28 Score=192.93 Aligned_cols=165 Identities=18% Similarity=0.354 Sum_probs=151.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+|++|+|..+|||||+| +|+.+-|. ++..|+|+++....+.++++.+.+.+||++|+++|..+...||++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 45799999999999999999 99999999 55569999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||+-+|+.||+.+..|++++.......|.++|-||+|| +.+ ......+++.+++.+++.++.+|++...||.++
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDl---ved--s~~~~~evE~lak~l~~RlyRtSvked~NV~~v 172 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDL---VED--SQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHV 172 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchh---hHh--hhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999999998888888999999998 222 334578899999999999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 023335 256 FKFIMAKLFNLP 267 (283)
Q Consensus 256 f~~l~~~i~~~~ 267 (283)
|.+|++.+.++.
T Consensus 173 F~YLaeK~~q~~ 184 (246)
T KOG4252|consen 173 FAYLAEKLTQQK 184 (246)
T ss_pred HHHHHHHHHHHH
Confidence 999999887655
No 118
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.94 E-value=3.2e-26 Score=187.66 Aligned_cols=152 Identities=17% Similarity=0.218 Sum_probs=119.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.+||+++|++|||||||+ ++..+.+....+|.+.++. .+.++ .+.+.+||++|++.+...+..+++++|++++||
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~ 90 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVI 90 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEE
Confidence 589999999999999999 9999888876777776653 33444 477999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINV 252 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v 252 (283)
|+++++++.....|+.++.+.. .+.|+++++||+|+.... ...+..+.+. +..+++++++||++|+||
T Consensus 91 D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi 164 (174)
T cd04153 91 DSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM------TPAEISESLGLTSIRDHTWHIQGCCALTGEGL 164 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC------CHHHHHHHhCcccccCCceEEEecccCCCCCH
Confidence 9999999998888777775442 345668999999962211 1112122222 234567899999999999
Q ss_pred HHHHHHHHH
Q 023335 253 NKIFKFIMA 261 (283)
Q Consensus 253 ~~lf~~l~~ 261 (283)
+++|++|.+
T Consensus 165 ~e~~~~l~~ 173 (174)
T cd04153 165 PEGLDWIAS 173 (174)
T ss_pred HHHHHHHhc
Confidence 999999864
No 119
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=1.3e-25 Score=184.31 Aligned_cols=143 Identities=24% Similarity=0.371 Sum_probs=123.8
Q ss_pred Cccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC
Q 023335 122 NEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 200 (283)
Q Consensus 122 ~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~ 200 (283)
+.|. .+.+|.|.++..+.+.+++..+.+.||||+|++++..++..|+++||++|+|||+++++||+.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 4566 566799999998999999999999999999999999999999999999999999999999999999999997765
Q ss_pred C-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335 201 Q-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 201 ~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 269 (283)
. ..|+||||||+||. ..+.+..+++..+++.+++.|+++||++|.||+++|++|++.+.+.+..
T Consensus 83 ~~~~piilVgNK~DL~-----~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 GKDVIIALVGNKTDLG-----DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred CCCCeEEEEEECcccc-----cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 3 44557999999972 1223446778888999999999999999999999999999999876644
No 120
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=9.4e-26 Score=201.88 Aligned_cols=200 Identities=17% Similarity=0.144 Sum_probs=149.8
Q ss_pred hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH-
Q 023335 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV- 117 (283)
Q Consensus 43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi- 117 (283)
-+++++|.||.||.++.++.++... +|..+..|.++ +...-..++ .|+++|.+|||||||+
T Consensus 110 ~~~~~~a~gg~gg~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~~adV~lvG~pnaGKSTLl~ 175 (329)
T TIGR02729 110 GQRFVVAKGGRGGLGNAHFKSSTNR-----APRFATPGEPG---------EERWLRLELKLLADVGLVGLPNAGKSTLIS 175 (329)
T ss_pred CcEEEecCCCCCCCCcccccCccCC-----CCcccCCCCCC---------cEEEEEEEeeccccEEEEcCCCCCHHHHHH
Confidence 5789999999999999888877665 36777777666 222222333 5779999999999999
Q ss_pred hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhcc---cCcEEEEEEECCCh---hhH
Q 023335 118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACK---DAVAILFMFDLTSR---CTL 186 (283)
Q Consensus 118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~~---~ad~iilv~D~~~~---~s~ 186 (283)
++.+.+.. ..++.+........+.+++ ...+.+||+||..+ ...+...|++ +++++++|+|+++. +++
T Consensus 176 ~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~ 254 (329)
T TIGR02729 176 AVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPI 254 (329)
T ss_pred HHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHH
Confidence 99987755 6666444444445555554 35678999999753 2245555544 69999999999987 788
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
+++..|.+++..+.+ +.|.+||+||+|+ ... ....+..+.+++.++.+++++||++++|++++++++.+.+
T Consensus 255 e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL---~~~---~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 255 EDYEIIRNELKKYSPELAEKPRIVVLNKIDL---LDE---EELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHHhhhhhccCCEEEEEeCccC---CCh---HHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 899999999887753 5677899999996 221 2234556667777788999999999999999999998764
No 121
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=3.1e-26 Score=184.68 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
+|+++|++|||||||+ ++.+..+ . ...||.|.... .+. ...+.+++|||+|++++..++..+++++|++|+||
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE--SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE--EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 5899999999999999 9998764 3 45567775543 222 34577899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--HcCCcEEEEcCCCCcCH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLFFSSATHNINV 252 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~e~Sa~~~~~v 252 (283)
|+++..+|..+..|+..+.... .+.|.++|+||+|+. .........+...+.. ...+.++++||++|.|+
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~----~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv 152 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP----DALTAVKITQLLGLENIKDKPWHIFASNALTGEGL 152 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc----CCCCHHHHHHHhCCccccCceEEEEEeeCCCCCch
Confidence 9999999999888888876531 345668999999962 1111111111111111 12345889999999999
Q ss_pred HHHHHHHHH
Q 023335 253 NKIFKFIMA 261 (283)
Q Consensus 253 ~~lf~~l~~ 261 (283)
+++|++|.+
T Consensus 153 ~~~~~~l~~ 161 (162)
T cd04157 153 DEGVQWLQA 161 (162)
T ss_pred HHHHHHHhc
Confidence 999999864
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.94 E-value=3.1e-26 Score=184.56 Aligned_cols=150 Identities=20% Similarity=0.262 Sum_probs=113.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
||+++|+++||||||+ ++..+.+....+|.+.++. .+.. ..+.+++|||+|++.+..++..+++++|++|+|||+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 6899999999999999 9988887766677776653 3333 457899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHh-H-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH----HHcCCcEEEEcCCCCcCHHH
Q 023335 181 TSRCTLNSIVGWYSEARK-W-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----KAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~-~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+++.++.....|+..+.+ . ..+.|.+||+||+|+.. .. ...+....+. +..+.+++++||++|.|+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~----~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 150 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPG----AL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDE 150 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC----CC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHH
Confidence 999988877666655433 2 23566689999999621 11 1111111111 12235699999999999999
Q ss_pred HHHHHHH
Q 023335 255 IFKFIMA 261 (283)
Q Consensus 255 lf~~l~~ 261 (283)
+|++|++
T Consensus 151 l~~~l~~ 157 (158)
T cd04151 151 GMDWLVN 157 (158)
T ss_pred HHHHHhc
Confidence 9999875
No 123
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=8e-25 Score=200.83 Aligned_cols=203 Identities=14% Similarity=0.164 Sum_probs=151.3
Q ss_pred hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH
Q 023335 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV 117 (283)
Q Consensus 42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi 117 (283)
-.+++++|.||+||.++.++.++.... |..++.|.++ +...-..++ .|+++|.+|||||||+
T Consensus 110 ~~~~~~va~GG~gG~gn~~F~~s~~~~-----p~~~~~G~~g---------e~~~~~lelk~~adVglVG~pNaGKSTLL 175 (424)
T PRK12297 110 PGQEVVVAKGGRGGRGNAHFATSTNQA-----PRIAENGEPG---------EERELRLELKLLADVGLVGFPNVGKSTLL 175 (424)
T ss_pred CCcEEEEECCCCCCcCchhhcCCCCCC-----CCcCCCCCCC---------eEeEEEEeecccCcEEEEcCCCCCHHHHH
Confidence 368899999999999998888776654 6677777665 222222333 5779999999999999
Q ss_pred -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCCh---hh
Q 023335 118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CT 185 (283)
Q Consensus 118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~---~s 185 (283)
++++.+.. ..++.+........+.+++ ...+.+||+||... ...+...|+ .+++++|+|+|+++. ++
T Consensus 176 n~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp 254 (424)
T PRK12297 176 SVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDP 254 (424)
T ss_pred HHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCCh
Confidence 99987765 5666444444444454441 34588999999643 334555554 459999999999865 78
Q ss_pred HHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 186 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 186 ~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
++++..|.+++..+.+ ..|.|||+||+|| +. ..+..+++++.++.+++++||++++|+++++++|.+.
T Consensus 255 ~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL----~~-----~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 255 IEDYEKINKELKLYNPRLLERPQIVVANKMDL----PE-----AEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred HHHHHHHHHHHhhhchhccCCcEEEEEeCCCC----cC-----CHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 8888899999988754 4566899999996 11 1344566677777889999999999999999999998
Q ss_pred HhCCcc
Q 023335 263 LFNLPW 268 (283)
Q Consensus 263 i~~~~~ 268 (283)
+.+.+.
T Consensus 326 l~~~~~ 331 (424)
T PRK12297 326 LEETPE 331 (424)
T ss_pred HHhCcc
Confidence 877654
No 124
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.93 E-value=3.3e-25 Score=178.26 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=117.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
||+++|.+|||||||+ +++++.+....+|.+.... .+.++ .+.+.+||++|++.+...+..+++++|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 7999999999999999 9999986666667776553 34444 46789999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCcCHH
Q 023335 181 TSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNINVN 253 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 253 (283)
++++++.....|+..+.... .+.|.++|+||+|+. ... ..++..+.. ....++++++||++|.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~---~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~ 149 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLP---GAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLD 149 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCc---ccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHH
Confidence 99999999988888776642 355668999999962 111 122222222 2234679999999999999
Q ss_pred HHHHHHHH
Q 023335 254 KIFKFIMA 261 (283)
Q Consensus 254 ~lf~~l~~ 261 (283)
++|++|..
T Consensus 150 ~~~~~l~~ 157 (158)
T cd00878 150 EGLDWLLQ 157 (158)
T ss_pred HHHHHHhh
Confidence 99999875
No 125
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=7e-25 Score=181.90 Aligned_cols=154 Identities=16% Similarity=0.168 Sum_probs=121.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
...||+++|++|||||||+ ++.++.+..+.+|.+... ..+.+++ +.+.+||++|++.+..++..+++++|++++|
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 4789999999999999999 999888766666666543 3555554 5688999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----------------cCC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----------------MKA 239 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----------------~~~ 239 (283)
+|+++.++|+....|+.++.... .+.|+++++||+|+.. ....++++++.+. ..+
T Consensus 94 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (190)
T cd00879 94 VDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG-------AVSEEELRQALGLYGTTTGKGVSLKVSGIRPI 166 (190)
T ss_pred EECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC-------CcCHHHHHHHhCcccccccccccccccCceeE
Confidence 99999999998888888876542 3466689999999621 2224455555432 224
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 240 TLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
.++++||++|+|++++|++|.+.+
T Consensus 167 ~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 167 EVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEEEeEecCCCChHHHHHHHHhhC
Confidence 689999999999999999998753
No 126
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=7e-25 Score=178.53 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=116.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+|+++|++|||||||+ ++.+. +. .+.+|.|... ..+..+ .+.+++||++|++.+..++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4899999999999999 99877 55 6667777653 344444 4778999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccc-h--HHHHHHHHHHcC--CcEEEEcCCCC---
Q 023335 180 LTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWT-I--ATQARAYAKAMK--ATLFFSSATHN--- 249 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~-~--~~~~~~~~~~~~--~~~~e~Sa~~~--- 249 (283)
+++.++|+++..|+..+.+.. .+.|++||+||+|+. ...... . ...+..++++.+ +.++++||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~----~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK----NALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc----CCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCC
Confidence 999999999999999887653 355668999999962 221111 1 112234443333 45667999998
Q ss_pred ---cCHHHHHHHHHH
Q 023335 250 ---INVNKIFKFIMA 261 (283)
Q Consensus 250 ---~~v~~lf~~l~~ 261 (283)
.|+++.|+||.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 899999999974
No 127
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=4.3e-25 Score=179.06 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc------c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
+|+++|++|||||||+ ++.+... . ...+|.+.++. .+.++ ...+.+|||+|++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999 9875432 1 33456666653 44454 4678999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------cCCcEEEE
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MKATLFFS 244 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~e~ 244 (283)
+++|||+++.+++.....|+..+.+.. .+.|.++|+||+|+.. . ...++..++.+. .+++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD----A---LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc----C---CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999999999988888876542 3556689999999621 1 112333333332 24579999
Q ss_pred cCCCCcCHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMA 261 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~ 261 (283)
||++|.|++++|++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999864
No 128
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.1e-23 Score=192.37 Aligned_cols=216 Identities=17% Similarity=0.157 Sum_probs=155.8
Q ss_pred hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH
Q 023335 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV 117 (283)
Q Consensus 42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi 117 (283)
--+++++|.||+||.++.++.++... +|..+..|.++ +...-..++ .|.|+|.||||||||+
T Consensus 111 ~~~~~~~a~GG~gG~gn~~f~~~~~~-----~p~~~~~g~~g---------~~~~~~lelk~iadValVG~PNaGKSTLl 176 (390)
T PRK12298 111 HGQRLLVAKGGWHGLGNTRFKSSVNR-----APRQKTPGTPG---------EERELKLELKLLADVGLLGLPNAGKSTFI 176 (390)
T ss_pred CCcEEEEecCCCCccchhhhccCccC-----CCcccCCCCCC---------ceEEEEEeeeccccEEEEcCCCCCHHHHH
Confidence 46889999999999999887777664 46777777665 222222333 4779999999999999
Q ss_pred -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----cchh---hhcccCcEEEEEEECC---Chhh
Q 023335 118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----DHVP---IACKDAVAILFMFDLT---SRCT 185 (283)
Q Consensus 118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~~~~---~~~~~ad~iilv~D~~---~~~s 185 (283)
++++.+.. ..+|.++.......+.+++ ...+.++||||..+-. .+.. ..+.++|++++|+|++ +.++
T Consensus 177 n~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~ 255 (390)
T PRK12298 177 RAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDP 255 (390)
T ss_pred HHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccCh
Confidence 99887755 6677444444444555543 2347889999975421 1222 2468999999999998 5677
Q ss_pred HHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023335 186 LNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 186 ~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
++++..|++++..+.. ..|.|||+||+|+ .. .....+.++++.+..+ .+++.+||+++.|++++++.|.
T Consensus 256 ~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl---~~---~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~ 329 (390)
T PRK12298 256 VENARIIINELEKYSPKLAEKPRWLVFNKIDL---LD---EEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLM 329 (390)
T ss_pred HHHHHHHHHHHHhhhhhhcCCCEEEEEeCCcc---CC---hHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHH
Confidence 8888899999888753 5677899999996 21 1223445555655544 3689999999999999999999
Q ss_pred HHHhCCccccccccCCCC
Q 023335 261 AKLFNLPWTVKRNLTIGE 278 (283)
Q Consensus 261 ~~i~~~~~~~~~~~~~~~ 278 (283)
+.+.+.++..+.....++
T Consensus 330 ~~L~~~~~~~~~~~~td~ 347 (390)
T PRK12298 330 TFIEENPREEAEEAEAPE 347 (390)
T ss_pred HHhhhCcccCCcccccCc
Confidence 999888876655554443
No 129
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1e-23 Score=195.89 Aligned_cols=204 Identities=14% Similarity=0.103 Sum_probs=148.2
Q ss_pred hhhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCcHHHhH
Q 023335 42 IWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFV 117 (283)
Q Consensus 42 ~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~----~KI~vlG~~~vGKSSLi 117 (283)
-.+++++|.||+||.+|.++.++... +|..+..|.++ +...-..+ .+|+|||.||||||||+
T Consensus 111 ~g~~~~~a~GG~GG~Gn~~f~~~~~~-----~p~~~~~G~~G---------e~~~~~leLk~~adV~LVG~PNAGKSTLl 176 (500)
T PRK12296 111 AGTRFVAAAGGRGGLGNAALASKARK-----APGFALLGEPG---------EERDLVLELKSVADVGLVGFPSAGKSSLI 176 (500)
T ss_pred CCCEEEEEccCCCcCCCcccCCccCC-----CCccccCCCCC---------ceEEEEEEecccceEEEEEcCCCCHHHHH
Confidence 36889999999999999888777765 47888888777 22222233 45889999999999999
Q ss_pred -hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhh---hcccCcEEEEEEECCC----hh
Q 023335 118 -KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPI---ACKDAVAILFMFDLTS----RC 184 (283)
Q Consensus 118 -~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~---~~~~ad~iilv~D~~~----~~ 184 (283)
++++.+.. ..++.+........+.+++ ..+.+||+||... ...+... ++.++|++|+|+|+++ ++
T Consensus 177 n~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~e~~rd 254 (500)
T PRK12296 177 SALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATLEPGRD 254 (500)
T ss_pred HHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEEEECCcccccccC
Confidence 99987766 6777555555555666655 4688999999642 2222222 3568999999999985 35
Q ss_pred hHHHHHHHHHHHHhHCC------------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 185 TLNSIVGWYSEARKWNQ------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 185 s~~~~~~~~~~i~~~~~------------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
.++++..|..++..+.+ ..|.|||+||+|+ ++. ....+.........++++|++||++++|+
T Consensus 255 p~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL----~da--~el~e~l~~~l~~~g~~Vf~ISA~tgeGL 328 (500)
T PRK12296 255 PLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV----PDA--RELAEFVRPELEARGWPVFEVSAASREGL 328 (500)
T ss_pred chhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc----hhh--HHHHHHHHHHHHHcCCeEEEEECCCCCCH
Confidence 67777777777776642 4667899999996 221 11223333344456789999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
++++++|.+.+.+.+
T Consensus 329 dEL~~~L~ell~~~r 343 (500)
T PRK12296 329 RELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998886644
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=5.9e-24 Score=175.82 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=117.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|.+|||||||+ ++.++.+....+|.+... ..+.++ .+.+.+||++|++.+..++..++.++|++|+|
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 3589999999999999999 999887765555655443 334444 36788999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEEE
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLFF 243 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~e 243 (283)
+|+++++++.....|+.++.+. ..+.|.++|+||+|+... ...+++.+.... ....+++
T Consensus 92 vD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~-------~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~ 164 (184)
T smart00178 92 VDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA-------ASEDELRYALGLTNTTGSKGKVGVRPLEVFM 164 (184)
T ss_pred EECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC-------CCHHHHHHHcCCCcccccccccCCceeEEEE
Confidence 9999999999998888877643 235566899999996221 122333322210 1234788
Q ss_pred EcCCCCcCHHHHHHHHHHH
Q 023335 244 SSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~ 262 (283)
+||++|+|++++++||.+.
T Consensus 165 ~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 165 CSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eecccCCChHHHHHHHHhh
Confidence 9999999999999999865
No 131
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=2.5e-23 Score=168.83 Aligned_cols=154 Identities=15% Similarity=0.173 Sum_probs=107.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh---------hhccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP---------IACKD 170 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------~~~~~ 170 (283)
+|+++|.+|||||||+ ++.++.+. ..++.+..+.....+.. ..+.+.+|||+|......... .....
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY--KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL 79 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc--CceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence 7999999999999999 99998875 33332222222222222 347799999999843111000 01123
Q ss_pred CcEEEEEEECCChhhH--HHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 171 AVAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 171 ad~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+|++|+|+|+++..++ +....|++.+.....+.|+|+|+||+|+. . ..... +..++++..+.+++++||++
T Consensus 80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~---~---~~~~~-~~~~~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL---T---FEDLS-EIEEEEELEGEEVLKISTLT 152 (168)
T ss_pred cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC---c---hhhHH-HHHHhhhhccCceEEEEecc
Confidence 6899999999987654 66678888887765567778999999962 1 11112 25556666678899999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 023335 249 NINVNKIFKFIMAKLF 264 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~ 264 (283)
|.|++++|+++.+.++
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 153 EEGVDEVKNKACELLL 168 (168)
T ss_pred cCCHHHHHHHHHHHhC
Confidence 9999999999998763
No 132
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=2e-23 Score=171.39 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=122.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
...+||+++|..|+|||||+ ++..+.+....||.|.+.. .+.+++ +.+.+||.+|+..++.+|+.|+.++|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~--~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIE--EIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEE--EEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCcccccccc--eeeeCc--EEEEEEeccccccccccceeeccccceeEE
Confidence 45899999999999999999 9988877777888887754 455555 568899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATH 248 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~ 248 (283)
|+|.++.+.+.+....+.++... ..+.|.+|++||+|+. .. ...+++..... ...+.++.+||.+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~----~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLP----DA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTST----TS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEecccccc----Cc---chhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 99999999999988877777654 2345557899999962 21 12333333222 2344578899999
Q ss_pred CcCHHHHHHHHHHHH
Q 023335 249 NINVNKIFKFIMAKL 263 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i 263 (283)
|+|+.+.|+||.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999999865
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.91 E-value=2.1e-23 Score=171.16 Aligned_cols=152 Identities=14% Similarity=0.223 Sum_probs=113.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc-------cc-cccc------cceeeeeEEEEEE-----CCeEEEEEEEeCCCCCCcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE-------QE-RSLQ------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~-------~~-~~~~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~~ 161 (283)
+|+++|+++||||||+ ++++.. +. ...+ +.|.++....+.+ ++..+.+++|||+|+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 6899999999999999 998742 22 1111 2244554444333 6678899999999999999
Q ss_pred cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-
Q 023335 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT- 240 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~- 240 (283)
.....+++++|++|+|||+++..+++....|..... .+.|.++|+||+|+. .. ...+...++++.+++.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~----~~---~~~~~~~~~~~~~~~~~ 151 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLP----SA---DPERVKQQIEDVLGLDP 151 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCC----cC---CHHHHHHHHHHHhCCCc
Confidence 999999999999999999999877777766654332 245668999999962 11 1123345566666663
Q ss_pred --EEEEcCCCCcCHHHHHHHHHHHH
Q 023335 241 --LFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 241 --~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
++++||++|.|++++|+++.+.+
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 152 SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998875
No 134
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=3.1e-23 Score=168.50 Aligned_cols=154 Identities=14% Similarity=0.133 Sum_probs=110.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCC----Ccccchhhhcc---cCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----RSFDHVPIACK---DAV 172 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---~ad 172 (283)
.|+++|.+|||||||+ ++.+.... ...+.+..+.....+.+++. ..+.+|||||.. .+..+...+++ .+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999 99876543 33332222222233344432 468999999964 22334444444 599
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCC
Q 023335 173 AILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSAT 247 (283)
Q Consensus 173 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~ 247 (283)
++++|+|+++. ++++.+..|.+++....+ ..|+++|+||+|+. + .....+....+... .+.+++++||+
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 154 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLL---D---EEELFELLKELLKELWGKPVFPISAL 154 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcC---C---chhhHHHHHHHHhhCCCCCEEEEecC
Confidence 99999999999 899999999999987743 45668999999962 2 12233445555555 37789999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMAK 262 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~ 262 (283)
++.|++++|+++.+.
T Consensus 155 ~~~gi~~l~~~i~~~ 169 (170)
T cd01898 155 TGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999865
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.91 E-value=1.4e-23 Score=167.67 Aligned_cols=150 Identities=18% Similarity=0.331 Sum_probs=115.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
.|+++|++|||||||+ ++.+.++. .+.+|.+.++. .+..++ +.+.+||++|++.+..++..+++++|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMR--KVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceE--EEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 3789999999999999 99999888 66678877764 333433 789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCcCHH
Q 023335 180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~~v~ 253 (283)
+++.+++.....|+..+... ..+.|.++|+||+|+. ... ...+....+ ....+++++++||++|.|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 150 (159)
T cd04159 77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP----GAL--SVDELIEQMNLKSITDREVSCYSISCKEKTNID 150 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc----CCc--CHHHHHHHhCcccccCCceEEEEEEeccCCChH
Confidence 99999998888777776543 2345668999999962 111 111111111 11234678999999999999
Q ss_pred HHHHHHHH
Q 023335 254 KIFKFIMA 261 (283)
Q Consensus 254 ~lf~~l~~ 261 (283)
++|++|.+
T Consensus 151 ~l~~~l~~ 158 (159)
T cd04159 151 IVLDWLIK 158 (159)
T ss_pred HHHHHHhh
Confidence 99999875
No 136
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=4.7e-23 Score=174.61 Aligned_cols=168 Identities=26% Similarity=0.326 Sum_probs=130.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ ++.++.+.. +.+|.+..+........+..+.+.+|||+|+++|+.++..|+.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 499999999999999999 999999994 555777777777766666688999999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCc-------ccchHHHHHHHHHH---cCCcEEEEc
Q 023335 178 FDLTS-RCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDL-------QWTIATQARAYAKA---MKATLFFSS 245 (283)
Q Consensus 178 ~D~~~-~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~-------~~~~~~~~~~~~~~---~~~~~~e~S 245 (283)
||.++ ..+++....|.+++....+ ..++++|+||+||........ ...........+.. ....++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 99999 4556666799999998885 466689999999743211000 11112222222222 233489999
Q ss_pred CC--CCcCHHHHHHHHHHHHhCCc
Q 023335 246 AT--HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 246 a~--~~~~v~~lf~~l~~~i~~~~ 267 (283)
++ ++.+|+++|..++..+.+..
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHHhh
Confidence 99 99999999999999997654
No 137
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.91 E-value=3.9e-23 Score=161.08 Aligned_cols=164 Identities=20% Similarity=0.202 Sum_probs=131.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.++++|+++|..|+||||++ +|.+.......||.|.+.. ++.++ .+++++||.+||..++..|+.||..+|++|+
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Ik--tl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIK--TLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeE--EEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 34899999999999999999 9998876677778887654 55554 4779999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|+|.+|+..+++....++++..- ....+++|++||.|+...+.... ....-++.++++...++.+.|||.+|+++.+
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~-i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEE-ISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHH-HHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999888877666655432 22467889999999743332211 0113446677788899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
-++|+...+..+
T Consensus 169 gidWL~~~l~~r 180 (185)
T KOG0073|consen 169 GIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHH
Confidence 999999988763
No 138
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.90 E-value=9.4e-24 Score=166.94 Aligned_cols=133 Identities=17% Similarity=0.141 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC-----CcccchhhhcccCcEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-----RSFDHVPIACKDAVAIL 175 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~~~~~~~ad~ii 175 (283)
||+++|++|||||||+ ++.++.+. +.+|.+.++. + .+|||+|+. .+..+.. .++++|++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999 99987653 2334443331 1 579999973 2333333 478999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~ 254 (283)
+|||++++.++.. ..|.+.+ ..|.++|+||+||. + .....+++.++++..+. +++++||++|.|+++
T Consensus 68 lv~d~~~~~s~~~-~~~~~~~-----~~p~ilv~NK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 68 LVQSATDPESRFP-PGFASIF-----VKPVIGLVTKIDLA---E---ADVDIERAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred EEecCCCCCcCCC-hhHHHhc-----cCCeEEEEEeeccC---C---cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 9999999998865 3454432 23668899999972 1 12235667778887776 799999999999999
Q ss_pred HHHHHH
Q 023335 255 IFKFIM 260 (283)
Q Consensus 255 lf~~l~ 260 (283)
+|+++.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 999874
No 139
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.90 E-value=2.5e-22 Score=159.65 Aligned_cols=154 Identities=20% Similarity=0.257 Sum_probs=124.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|.+|+|||||+ ++.++.+. ++.++++.++....+..++..+.+.+||++|+..+..++..+++++++++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 379999999999999999 99998866 6667888888777788888778899999999999999999999999999999
Q ss_pred EECCCh-hhHHHHH-HHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 178 FDLTSR-CTLNSIV-GWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~-~s~~~~~-~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|+... .++.... .|...+..... +.|.++++||+|+. .. .........+......+++++||++|.|+++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~~---~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLR---DA---KLKTHVAFLFAKLNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCC---cc---hhhHHHHHHHhhccCCceEEeecCCCCCHHH
Confidence 999887 7777765 78887777655 55668999999962 11 1223333334444456899999999999999
Q ss_pred HHHHH
Q 023335 255 IFKFI 259 (283)
Q Consensus 255 lf~~l 259 (283)
+|++|
T Consensus 155 ~~~~l 159 (161)
T TIGR00231 155 AFKIV 159 (161)
T ss_pred HHHHh
Confidence 99986
No 140
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.90 E-value=8.6e-23 Score=166.59 Aligned_cols=149 Identities=16% Similarity=0.221 Sum_probs=114.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++.+..+....+|.|.++. .+..++ ..+.+||++|+..+...+..+++++|++++|
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~--~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIK--TVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceE--EEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 3789999999999999999 9988777666667775543 444554 5688999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--------cEEEEcCC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--------TLFFSSAT 247 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~e~Sa~ 247 (283)
||+++..++.....|+..+.+.. .+.|.++++||+|+. . . .. ..++.+.+++ .++++||+
T Consensus 89 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~---~-~--~~----~~~i~~~l~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04155 89 IDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA---T-A--AP----AEEIAEALNLHDLRDRTWHIQACSAK 158 (173)
T ss_pred EeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc---c-C--CC----HHHHHHHcCCcccCCCeEEEEEeECC
Confidence 99999999988887776665432 245667999999962 1 1 11 1222333332 36789999
Q ss_pred CCcCHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMA 261 (283)
Q Consensus 248 ~~~~v~~lf~~l~~ 261 (283)
+|+|++++|++|.+
T Consensus 159 ~~~gi~~~~~~l~~ 172 (173)
T cd04155 159 TGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCHHHHHHHHhc
Confidence 99999999999975
No 141
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=1.2e-22 Score=163.83 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=102.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc---cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE---QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.|+++|++|||||||+ ++++.. +. +..++++.+.....+.+++ ...+.+|||+|+++|......+++++|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999 998642 33 2223334444334455542 3578999999999887666678899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH---cCCcEEEEcCCCCc
Q 023335 177 MFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---MKATLFFSSATHNI 250 (283)
Q Consensus 177 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~ 250 (283)
|||+++ .++++.+. .+... ...|+++|+||+|+. .........++..+..+. .+.+++++||++|.
T Consensus 81 V~d~~~~~~~~~~~~~~----~~~~~-~~~~~ilv~NK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (164)
T cd04171 81 VVAADEGIMPQTREHLE----ILELL-GIKRGLVVLTKADLV---DEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGE 152 (164)
T ss_pred EEECCCCccHhHHHHHH----HHHHh-CCCcEEEEEECcccc---CHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCc
Confidence 999987 34443322 22222 223668999999962 111111223444455444 46789999999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
|++++|+.+.+
T Consensus 153 ~v~~l~~~l~~ 163 (164)
T cd04171 153 GIEELKEYLDE 163 (164)
T ss_pred CHHHHHHHHhh
Confidence 99999998764
No 142
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.2e-23 Score=162.89 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=127.0
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+.+|+++|..++||||++ ++..+++....||.|.+... +.+. ++.+.+||.+||++++.+|+.|+++.+++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~--v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVET--VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeE--EEEc--ceEEEEEecCCCcccccchhhhccCCcEE
Confidence 3456899999999999999999 99999999779999987654 3443 68899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHH--HHcCCcEEEEcCCCCc
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYA--KAMKATLFFSSATHNI 250 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~e~Sa~~~~ 250 (283)
|||+|.+|++-+.+.++-+..+..... ..|.++.+||.|+.+.++..+ ..+...+. +.....+..++|.+|+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~e----i~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAE----ITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHH----HHhHhhhhccCCCCcEEeeccccccc
Confidence 999999999999998877777666543 445568899999754444210 11111111 1122334559999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 023335 251 NVNKIFKFIMAKLFNL 266 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~ 266 (283)
|+.|.++++.+.+.+.
T Consensus 165 GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKKR 180 (181)
T ss_pred cHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 143
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.2e-22 Score=162.07 Aligned_cols=164 Identities=23% Similarity=0.342 Sum_probs=142.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+|++++|+.|.|||+++ +.+.++|+ .+.+|+|++...-...-+...+++..|||+|+|.+..+..-||-++.+.|
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35799999999999999999 99999999 66679999887666655555799999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
++||++.+-++.++..|...+.+.+.+.|++++|||.|. . .+.+....-.+-+..++.||++||+++.|.+.-
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi----~---~r~~k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDI----K---ARKVKAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceec----c---ccccccccceeeecccceeEEeecccccccccc
Confidence 999999999999999999999999988788899999994 1 112334445566677899999999999999999
Q ss_pred HHHHHHHHhCCcc
Q 023335 256 FKFIMAKLFNLPW 268 (283)
Q Consensus 256 f~~l~~~i~~~~~ 268 (283)
|.++.+.+...+.
T Consensus 161 Fl~LarKl~G~p~ 173 (216)
T KOG0096|consen 161 FLWLARKLTGDPS 173 (216)
T ss_pred hHHHhhhhcCCCC
Confidence 9999999988773
No 144
>PRK15494 era GTPase Era; Provisional
Probab=99.88 E-value=2.1e-21 Score=174.97 Aligned_cols=168 Identities=16% Similarity=0.277 Sum_probs=122.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchh-------h
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVP-------I 166 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-------~ 166 (283)
.+.+||+++|.+|||||||+ ++++..+. ...+.+..+.....+..++. .+.+|||||... +..+.. .
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~--qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDT--QVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCe--EEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 45789999999999999999 99998876 23332233444455666654 578999999854 333222 2
Q ss_pred hcccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF 243 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e 243 (283)
++.++|++++|+|.++ +|.... .|++.++.. +.|+|+|+||+|+. .. ...++.+++...+ ..+|+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~----~~----~~~~~~~~l~~~~~~~~i~~ 195 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIE----SK----YLNDIKAFLTENHPDSLLFP 195 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCc----cc----cHHHHHHHHHhcCCCcEEEE
Confidence 4679999999999754 455553 466666543 45778999999962 11 1344555555544 57899
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 279 (283)
+||++|.|++++|++|.+.+.+.+|.......++.|
T Consensus 196 iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~ 231 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLP 231 (339)
T ss_pred EeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999888777665
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=1e-21 Score=164.83 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--chh------hhcc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--HVP------IACK 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~------~~~~ 169 (283)
.++|+|+|++|||||||+ ++++..+. ...+..+.+.....+.+++. ..+.+|||+|...... +.. ..+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTLEEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999 99988754 33333333334445555543 3688999999743111 111 1357
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
++|++++|+|++++.++..+..|.+.+..... +.|+++|+||+|+ .+.. . ....+...+.+++++||++
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl---~~~~---~----~~~~~~~~~~~~~~~Sa~~ 189 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDL---LDDE---E----LEERLEAGRPDAVFISAKT 189 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcccc---CChH---H----HHHHhhcCCCceEEEEcCC
Confidence 89999999999999999888888887776543 4566899999996 2211 1 1134455677899999999
Q ss_pred CcCHHHHHHHHHHHH
Q 023335 249 NINVNKIFKFIMAKL 263 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i 263 (283)
+.|++++|++|.+.+
T Consensus 190 ~~gi~~l~~~L~~~~ 204 (204)
T cd01878 190 GEGLDELLEAIEELL 204 (204)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998753
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.87 E-value=3.9e-21 Score=154.08 Aligned_cols=146 Identities=13% Similarity=0.076 Sum_probs=109.9
Q ss_pred EEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhcc--cCcEE
Q 023335 105 LLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIACK--DAVAI 174 (283)
Q Consensus 105 vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~~--~ad~i 174 (283)
++|.+|||||||+ ++.+..+. ..+++++.+.....+.+++ ..+.+|||||++.+... ...++. ++|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999 99888755 6667666676667777776 46889999999876643 455664 99999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
++|+|.++.++. ..|..++... +.|.++|+||+|+. . . .........+++.++++++++||.+|.|+++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~~--~~~~iiv~NK~Dl~---~-~--~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~ 147 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLEL--GLPVVVALNMIDEA---E-K--RGIKIDLDKLSELLGVPVVPTSARKGEGIDE 147 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHHc--CCCEEEEEehhhhc---c-c--ccchhhHHHHHHhhCCCeEEEEccCCCCHHH
Confidence 999999886543 2444444432 45678999999962 1 1 1223334577777889999999999999999
Q ss_pred HHHHHHHHH
Q 023335 255 IFKFIMAKL 263 (283)
Q Consensus 255 lf~~l~~~i 263 (283)
+|+++.+.+
T Consensus 148 l~~~l~~~~ 156 (158)
T cd01879 148 LKDAIAELA 156 (158)
T ss_pred HHHHHHHHh
Confidence 999998763
No 147
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.87 E-value=1.3e-21 Score=149.90 Aligned_cols=112 Identities=29% Similarity=0.541 Sum_probs=90.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc---cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
||+|+|++|||||||+ ++++..+. ...++.+.++......+......+++||++|++.+...+..++.++|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999 99998876 2233445555555667777777799999999999888888889999999999
Q ss_pred EECCChhhHHHHH---HHHHHHHhHCCCCceEEEeecCC
Q 023335 178 FDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 178 ~D~~~~~s~~~~~---~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
||+++++||+.+. .|+..+.....+.|.||||||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999874 56777777777766689999998
No 148
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.87 E-value=6.5e-21 Score=166.96 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=117.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cc-------hhhhcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DH-------VPIACK 169 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~-------~~~~~~ 169 (283)
+|+++|.+|||||||+ ++++.++. ...+ |+.. ........++ ..+.+|||||..... .+ ...+++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~-~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRN-RISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccC-cEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999 99998765 4444 4432 2222222233 458899999976432 11 234678
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH 248 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 248 (283)
++|++++|+|+++..+.+ ..+++.+.. .+.|.++|+||+|+ .. .....+....++...+. +++++||++
T Consensus 79 ~aDvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl---~~---~~~~~~~~~~~~~~~~~~~v~~iSA~~ 148 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDN---KF---KDKLLPLIDKYAILEDFKDIVPISALT 148 (270)
T ss_pred hCCEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeC---CC---HHHHHHHHHHHHhhcCCCceEEEecCC
Confidence 999999999999877764 344554443 24566899999996 21 22234455556555555 789999999
Q ss_pred CcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335 249 NINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 279 (283)
|.|++++++++.+.+...+|........+.|
T Consensus 149 g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~ 179 (270)
T TIGR00436 149 GDNTSFLAAFIEVHLPEGPFRYPEDYVTDQP 179 (270)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCcccCCCC
Confidence 9999999999999999999887777665544
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=5.5e-21 Score=179.69 Aligned_cols=254 Identities=15% Similarity=0.115 Sum_probs=153.1
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCccc-ccccccCCCCCCCCCCcccccccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR-YQKLTRRSSSESSPAPDTMEAGLV 82 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~-~~~~~~~~~~~~~p~p~~~~~g~~ 82 (283)
+..++..++.+++..++.+|.+.+.......+.+.++..--+++++-...-.... .............|-+..+..|..
T Consensus 107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~g 186 (472)
T PRK03003 107 VAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRG 186 (472)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCC
Confidence 4455666778888889999999887666655666666544455554441110000 000000000000111111122211
Q ss_pred --cc----ccccCC-CCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEE
Q 023335 83 --EL----SRTFSS-GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIW 152 (283)
Q Consensus 83 --~~----~~~~~~-~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~ 152 (283)
.. ...... ..........+||+++|.+|||||||+ ++++..+. ...++++.+.....+.+++.. +.+|
T Consensus 187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~ 264 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFV 264 (472)
T ss_pred cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEE
Confidence 00 000000 001111123589999999999999999 99998764 666777777777777788765 4689
Q ss_pred eCCCCCC----------cccch-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 153 DVGGDSR----------SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 153 Dt~G~~~----------~~~~~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
||+|..+ |..+. ..+++++|++|+|||+++..+++++. ++..+.. .+.|.|||+||+||. ...
T Consensus 265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~---~~~ 338 (472)
T PRK03003 265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLV---DED 338 (472)
T ss_pred ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccC---Chh
Confidence 9999632 22222 23578999999999999998888764 4454443 355678999999972 222
Q ss_pred cccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 222 LQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
......+++.+ +.....++++++||++|.||+++|+.+.+.+.+
T Consensus 339 ~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 339 RRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES 383 (472)
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11222223322 222334789999999999999999999987743
No 150
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.86 E-value=2.5e-21 Score=161.35 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=105.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc--Ccccccc-------------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 164 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 164 (283)
.+|+++|.++||||||+ ++++ +.+...+ .+.|.++..+...++...+.+++|||+|+++|....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 48999999999999999 9987 5554221 234555555555666667889999999999999999
Q ss_pred hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-------Hc
Q 023335 165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AM 237 (283)
Q Consensus 165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-------~~ 237 (283)
..+++++|++++|||+++.. +.....|+..+.. .+.|+++|+||+|+. ........+++.++.. ..
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRP----DARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCC----CCCHHHHHHHHHHHHHHhCCccccC
Confidence 99999999999999998742 3333445554433 245678999999962 2222223455555543 23
Q ss_pred CCcEEEEcCCCCcCHHH
Q 023335 238 KATLFFSSATHNINVNK 254 (283)
Q Consensus 238 ~~~~~e~Sa~~~~~v~~ 254 (283)
+++++++||++|.|+.+
T Consensus 156 ~~~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 156 DFPVLYASAKNGWASLN 172 (194)
T ss_pred ccCEEEeehhccccccc
Confidence 67899999999987643
No 151
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.86 E-value=1.2e-20 Score=152.79 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=105.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.|+++|.+|||||||+ ++..+.+.. ..++...+.....+..+ +....+.+|||+|++.|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 4899999999999999 999888773 22333333322333333 23567899999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH------HcCCcEEEEcCCCCcCH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK------AMKATLFFSSATHNINV 252 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v 252 (283)
|+++....+.. ..+..+.. .+.|+++|+||+|+. ........+....+.. ...++++++||++|+|+
T Consensus 82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 154 (168)
T cd01887 82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKP----NANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGI 154 (168)
T ss_pred ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecc----cccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCH
Confidence 99885322221 11222322 345678999999962 1111111222222211 12367999999999999
Q ss_pred HHHHHHHHHHHh
Q 023335 253 NKIFKFIMAKLF 264 (283)
Q Consensus 253 ~~lf~~l~~~i~ 264 (283)
+++|++|.+...
T Consensus 155 ~~l~~~l~~~~~ 166 (168)
T cd01887 155 DDLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHHhhh
Confidence 999999987653
No 152
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.85 E-value=2.5e-20 Score=143.72 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=131.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCc-ccchhhhcccCcEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRS-FDHVPIACKDAVAI 174 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~ad~i 174 (283)
..||+++|..+||||+++ +++.+... ..+..+..|.+...+.- .|..-.+.++||+|...+ ..+-++|+.-+|++
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDaf 88 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADAF 88 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCceE
Confidence 579999999999999999 88776655 33334445555555544 455667999999998887 66778899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
+||||..|++||+.+..+..+|.+... ..|+++.|||+|+ .+..++..+.++.||+.-.+..++++|.+...+
T Consensus 89 VLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr-----~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL 163 (198)
T KOG3883|consen 89 VLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDR-----AEPREVDMDVAQIWAKREKVKLWEVTAMDRPSL 163 (198)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhc-----ccchhcCHHHHHHHHhhhheeEEEEEeccchhh
Confidence 999999999999998877777776643 3455688999996 233455688899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
-+.|..+...+....
T Consensus 164 ~epf~~l~~rl~~pq 178 (198)
T KOG3883|consen 164 YEPFTYLASRLHQPQ 178 (198)
T ss_pred hhHHHHHHHhccCCc
Confidence 999999999987654
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.85 E-value=3.3e-20 Score=145.73 Aligned_cols=152 Identities=25% Similarity=0.415 Sum_probs=116.7
Q ss_pred EEcCCCCcHHHhH-hhhcCcc-ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC
Q 023335 105 LLGDCQIGKTSFV-KYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS 182 (283)
Q Consensus 105 vlG~~~vGKSSLi-~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~ 182 (283)
++|.+|+|||||+ ++.+... .....++..++........+....+.+||++|+..+......+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 5899999999999 9998887 4333433477777777777778899999999999888777888999999999999999
Q ss_pred hhhHHHHHHHH--HHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023335 183 RCTLNSIVGWY--SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 183 ~~s~~~~~~~~--~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
..+++....|. ..........|.++|+||+|+. ... ...............+.+++++|+.++.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~---~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLP---EER-VVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccc---ccc-chHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 99999988773 2223334456668999999962 111 11111114445556678999999999999999999875
No 154
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=5.9e-20 Score=171.08 Aligned_cols=252 Identities=16% Similarity=0.152 Sum_probs=150.6
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCC--CCccc--ccccccCCCCCCCCCCccccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGK--QPAVR--YQKLTRRSSSESSPAPDTMEA 79 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~--~~~~~--~~~~~~~~~~~~~p~p~~~~~ 79 (283)
+..++..++.++...++.+|.+.++.....-+.+.+++...+++++-... ..... +........ .+-+..+..
T Consensus 68 ~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~~~~~~~lg~~---~~~~vSa~~ 144 (429)
T TIGR03594 68 IREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFG---EPIPISAEH 144 (429)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccccHHHHHhcCCC---CeEEEeCCc
Confidence 44566677788888899999998888777667777777666666654311 11000 000000000 000111111
Q ss_pred cc--ccc----ccccC-CCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEE
Q 023335 80 GL--VEL----SRTFS-SGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAF 149 (283)
Q Consensus 80 g~--~~~----~~~~~-~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l 149 (283)
|. ... ..... ...........+||+++|.+|||||||+ ++++.... ...+.+..+.....+..++. .+
T Consensus 145 g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~ 222 (429)
T TIGR03594 145 GRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KY 222 (429)
T ss_pred CCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EE
Confidence 10 000 00000 0111112234689999999999999999 99987644 55555555555555666665 57
Q ss_pred EEEeCCCCCCcccch-----------hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 150 SIWDVGGDSRSFDHV-----------PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 150 ~i~Dt~G~~~~~~~~-----------~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
.+|||+|..++.... ..+++.+|++|+|+|+++..+.++.. ++..+.. ...|.|+|+||+||..
T Consensus 223 ~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~-- 297 (429)
T TIGR03594 223 LLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVK-- 297 (429)
T ss_pred EEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCC--
Confidence 889999986654322 23678999999999999887776653 3444433 2456789999999720
Q ss_pred CCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 219 PPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.........+++...... .+++++++||++|.|++++|+++.+.+..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 298 DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111111112222221111 24789999999999999999999886643
No 155
>PRK04213 GTP-binding protein; Provisional
Probab=99.85 E-value=6.7e-21 Score=159.51 Aligned_cols=149 Identities=16% Similarity=0.198 Sum_probs=99.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC-----------CCCcccchh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVP 165 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~ 165 (283)
..+||+++|.+|||||||+ ++.+..+. ...++++ +....+.+. .+.+|||+| ++.++.++.
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV 81 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence 3579999999999999999 99988766 4444333 333333333 488999999 455655555
Q ss_pred hhcc----cCcEEEEEEECCChhhHHHHHHH------------HHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335 166 IACK----DAVAILFMFDLTSRCTLNSIVGW------------YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 229 (283)
Q Consensus 166 ~~~~----~ad~iilv~D~~~~~s~~~~~~~------------~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~ 229 (283)
.++. .++++++|+|.++...+. ..| +..+.. .+.|+++|+||+|+. ... .+.
T Consensus 82 ~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~----~~~----~~~ 149 (201)
T PRK04213 82 RYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKI----KNR----DEV 149 (201)
T ss_pred HHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH--cCCCeEEEEECcccc----CcH----HHH
Confidence 6654 346777888765432210 122 222222 356778999999962 111 334
Q ss_pred HHHHHHHcCC---------cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 230 ARAYAKAMKA---------TLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 230 ~~~~~~~~~~---------~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
..++++.+++ +++++||++| |++++|++|.+.+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 150 LDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 5566666665 4789999999 9999999999887543
No 156
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.85 E-value=4.5e-21 Score=146.89 Aligned_cols=159 Identities=19% Similarity=0.296 Sum_probs=120.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.++.+.++|..++|||||+ ....+.+. .-.||.|.+.. .+....+.+.+||.+||.+|+.+|..|++.++++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmr----k~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY 94 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMR----KVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY 94 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeE----EeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence 3678999999999999999 88888887 67788887753 344567889999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|+|.++++.++..+.-++.+..... ..+| ++.|||.|+...+... ..+.+....-.....+..|.+|+++..|++.
T Consensus 95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~--~li~rmgL~sitdREvcC~siScke~~Nid~ 172 (186)
T KOG0075|consen 95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKI--ALIERMGLSSITDREVCCFSISCKEKVNIDI 172 (186)
T ss_pred EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHH--HHHHHhCccccccceEEEEEEEEcCCccHHH
Confidence 9999999888777665555554432 4455 6889999964433321 1111111111222345688999999999999
Q ss_pred HHHHHHHHH
Q 023335 255 IFKFIMAKL 263 (283)
Q Consensus 255 lf~~l~~~i 263 (283)
+.+||++.-
T Consensus 173 ~~~Wli~hs 181 (186)
T KOG0075|consen 173 TLDWLIEHS 181 (186)
T ss_pred HHHHHHHHh
Confidence 999999864
No 157
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.2e-20 Score=142.07 Aligned_cols=155 Identities=17% Similarity=0.213 Sum_probs=121.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++++|+++|..++||||++ ++.-+......||+|++.. ++.+ +++.+++||.+|+++.+.+|++||....++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnve--tVty--kN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEE--EEEe--eeeEEeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 4899999999999999999 9999988888999998765 3333 568899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 250 (283)
.|..+++..++.+.-+..+.... .+.+.+|.+||.|+....+ .+++.++. +........+||.+|+
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~-------pqei~d~leLe~~r~~~W~vqp~~a~~gd 164 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK-------PQEIQDKLELERIRDRNWYVQPSCALSGD 164 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC-------HHHHHHHhccccccCCccEeeccccccch
Confidence 99999988888876555554432 2344568899999633222 23333332 2223345569999999
Q ss_pred CHHHHHHHHHHHHh
Q 023335 251 NVNKIFKFIMAKLF 264 (283)
Q Consensus 251 ~v~~lf~~l~~~i~ 264 (283)
|+.|-|.|+.+.+-
T Consensus 165 gL~eglswlsnn~~ 178 (180)
T KOG0071|consen 165 GLKEGLSWLSNNLK 178 (180)
T ss_pred hHHHHHHHHHhhcc
Confidence 99999999987653
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.84 E-value=4.4e-20 Score=171.37 Aligned_cols=149 Identities=15% Similarity=0.234 Sum_probs=117.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 168 (283)
.+||+++|.+|||||||+ ++++... ...+++++.++....+.+++.. +.+|||+|...+... ...++
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 589999999999999999 9998764 3667777778777888887754 689999998765432 23578
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+++|++++|||++++.+++.. |+..+.. .+.|+|+|+||+|+. .. +...+++.++.+++++||++
T Consensus 281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~----~~-------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLK----IN-------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCC----Cc-------chhhhhhhcCCceEEEEEec
Confidence 999999999999999888775 7776643 245668999999962 11 12345667788899999998
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023335 249 NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~ 266 (283)
.||+++|+.+.+.+.+.
T Consensus 346 -~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 -LKIKALVDLLTQKINAF 362 (442)
T ss_pred -CCHHHHHHHHHHHHHHH
Confidence 69999999999887653
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=2.6e-20 Score=168.26 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=109.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC---------cccchhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~ 168 (283)
.++|+++|.+|||||||+ ++++..+. ...+.+..++....+.+++. ..+.+|||+|..+ |.... ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 489999999999999999 99988754 55554445666677777432 3688999999732 21111 247
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
.+||++++|||++++.+++.+..|...+..... +.|.++|+||+|+ .+. .+...+. ....+++++||+
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl---~~~-------~~v~~~~-~~~~~~i~iSAk 335 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDL---LDE-------PRIERLE-EGYPEAVFVSAK 335 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecC---CCh-------HhHHHHH-hCCCCEEEEEcc
Confidence 899999999999999988888777766666543 4566899999996 211 1111111 123468999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMAK 262 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~ 262 (283)
+|.|++++++.|.+.
T Consensus 336 tg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 336 TGEGLDLLLEAIAER 350 (351)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999998764
No 160
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=1.2e-22 Score=161.39 Aligned_cols=166 Identities=20% Similarity=0.324 Sum_probs=139.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE-EEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR-IAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~-~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
...+|+.|+|+-++||||++ +++...|. .+..|+|.++..+.+..+... +++++||++||++|..+...||+.+.+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 34689999999999999999 99999999 566699999988888887654 6899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CC--Cce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QT--AIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATH 248 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~--~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 248 (283)
.+|||+++.-+|+.+..|.+++.... ++ +.| |+.+||||+ ..............+++++|+ ..+|+|+|.
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~----e~~a~~~~~~~~d~f~kengf~gwtets~Ke 178 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQ----EKSAKNEATRQFDNFKKENGFEGWTETSAKE 178 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhcc----ChHhhhhhHHHHHHHHhccCccceeeecccc
Confidence 99999999999999999999987652 22 222 688999995 222111224667788888987 589999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023335 249 NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~ 267 (283)
+.|++|+-..+++.++-+.
T Consensus 179 nkni~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 179 NKNIPEAQRELVEKILVND 197 (229)
T ss_pred ccChhHHHHHHHHHHHhhc
Confidence 9999999999999887655
No 161
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.84 E-value=5.3e-20 Score=159.94 Aligned_cols=205 Identities=17% Similarity=0.170 Sum_probs=152.7
Q ss_pred hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCcHHHhH-
Q 023335 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV- 117 (283)
Q Consensus 43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~KI~----vlG~~~vGKSSLi- 117 (283)
-+++++|.||.+|.+|.++.++.+. +|+.+..|.++ +...-..++|++ +||.||+|||||+
T Consensus 112 gq~~~~akGG~GG~GN~~Fks~~nr-----AP~~a~~G~~G---------e~r~v~LELKllADVGLVG~PNaGKSTlls 177 (369)
T COG0536 112 GQRFLVAKGGRGGLGNAHFKSSVNR-----APRFATPGEPG---------EERDLRLELKLLADVGLVGLPNAGKSTLLS 177 (369)
T ss_pred CcEEEEEcCCCCCccchhhcCcccC-----CcccCCCCCCC---------ceEEEEEEEeeecccccccCCCCcHHHHHH
Confidence 5789999999999999998888776 48888888877 555556678876 9999999999999
Q ss_pred hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCChh---hH
Q 023335 118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRC---TL 186 (283)
Q Consensus 118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~~---s~ 186 (283)
.+...+.. ..||.|.....-..+.++ ..-.+.+-|.||.-+ -..+-..|+ .++.++++|+|++..+ ..
T Consensus 178 ~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~~~dp~ 256 (369)
T COG0536 178 AVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPIDGRDPI 256 (369)
T ss_pred HHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhheeEEEEecCcccCCCHH
Confidence 99998888 889966555555566653 234578899998543 344555554 5788999999998654 47
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE-EcCCCCcCHHHHHHHHHHH
Q 023335 187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF-SSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e-~Sa~~~~~v~~lf~~l~~~ 262 (283)
+++.....++.+|.+ ++|.+||+||+|+ ..+ .+........+.+..+...+. +||.+++|++++...+.+.
T Consensus 257 ~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~----~~~-~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~ 331 (369)
T COG0536 257 EDYQTIRNELEKYSPKLAEKPRIVVLNKIDL----PLD-EEELEELKKALAEALGWEVFYLISALTREGLDELLRALAEL 331 (369)
T ss_pred HHHHHHHHHHHHhhHHhccCceEEEEeccCC----CcC-HHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHH
Confidence 777788888888854 6777999999995 111 112233344444444543322 9999999999999999988
Q ss_pred HhCCc
Q 023335 263 LFNLP 267 (283)
Q Consensus 263 i~~~~ 267 (283)
+.+.+
T Consensus 332 l~~~~ 336 (369)
T COG0536 332 LEETK 336 (369)
T ss_pred HHHhh
Confidence 87765
No 162
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=1.3e-19 Score=144.67 Aligned_cols=144 Identities=16% Similarity=0.242 Sum_probs=106.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhcc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIACK 169 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~ 169 (283)
+||+++|++|+|||||+ ++.+..+. ...+++..++....+..++ ..+.+|||+|...+... ...++.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999 99887754 4455555555555555554 46788999998765432 224678
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 249 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 249 (283)
++|++++|+|++++.+..+...|.. ....|+++|+||+|+. ... .. .....+.+++++||+++
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~---~~~-~~--------~~~~~~~~~~~~Sa~~~ 142 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLL---PDS-EL--------LSLLAGKPIIAISAKTG 142 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcC---Ccc-cc--------ccccCCCceEEEECCCC
Confidence 9999999999999888777654433 3456778999999962 211 11 33445678999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023335 250 INVNKIFKFIMAKL 263 (283)
Q Consensus 250 ~~v~~lf~~l~~~i 263 (283)
.|+++++++|.+.+
T Consensus 143 ~~v~~l~~~l~~~~ 156 (157)
T cd04164 143 EGLDELKEALLELA 156 (157)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999988754
No 163
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=3.9e-20 Score=150.84 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=105.2
Q ss_pred EEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccch---hhhcccCcEEE
Q 023335 105 LLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHV---PIACKDAVAIL 175 (283)
Q Consensus 105 vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~---~~~~~~ad~ii 175 (283)
++|++|||||||+ ++.+..+. ..++.+..+.....+.+++ ...+.+|||||... ...+. ..+++++|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 5899999999999 99888753 3444232333333444551 34578999999632 22332 23467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhHC--------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 176 FMFDLTSR------CTLNSIVGWYSEARKWN--------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 176 lv~D~~~~------~s~~~~~~~~~~i~~~~--------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
+|+|+++. .+++++..|..++.... ...|.++|+||+|+. .. ...............+..+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~---~~--~~~~~~~~~~~~~~~~~~~ 154 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD---DA--EELEEELVRELALEEGAEV 154 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC---ch--hHHHHHHHHHHhcCCCCCE
Confidence 99999988 57888888888887654 245668999999961 11 1111111233444556789
Q ss_pred EEEcCCCCcCHHHHHHHHHHH
Q 023335 242 FFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
+++||+++.|++++++++.+.
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEehhhhcCHHHHHHHHHhh
Confidence 999999999999999998764
No 164
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=6.2e-20 Score=172.55 Aligned_cols=152 Identities=21% Similarity=0.267 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~ 168 (283)
..+|+|+|.+|||||||+ ++++.... ...++++.+.....+.+++. .+.+|||+|.+. +......++
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 115 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVAM 115 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence 368999999999999999 99988754 44454445555555666664 478899999763 223345678
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+.+|++|+|||+++..++.. ..|...++. .+.|+|+|+||+|+. .. ..+....+...++ ..+++||++
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~----~~----~~~~~~~~~~g~~-~~~~iSA~~ 183 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDE----RG----EADAAALWSLGLG-EPHPVSALH 183 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCC----cc----chhhHHHHhcCCC-CeEEEEcCC
Confidence 99999999999999876543 344444443 356778999999962 11 1112222222223 357899999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023335 249 NINVNKIFKFIMAKLFN 265 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~ 265 (283)
|.|++++|+++++.+.+
T Consensus 184 g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 184 GRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCcHHHHHHHHhhccc
Confidence 99999999999998865
No 165
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.83 E-value=6.4e-20 Score=152.65 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=100.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC----ccc----cccc--cceeeeeEEEEE----------ECCeEEEEEEEeCCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN----EQE----RSLQ--MAGLNLINKTLM----------VQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~----~~~----~~~~--t~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~~~ 159 (283)
++|+++|++++|||||+ +++.. .+. +..+ |.+..+....+. .++....+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999 99872 222 1122 333333333332 123467899999999865
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-H---
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-K--- 235 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-~--- 235 (283)
+..........+|++++|+|+++..+......|.. . ... ..++++|+||+|+ ..........++..+.. +
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~-~~~-~~~~iiv~NK~Dl---~~~~~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-G-EIL-CKKLIVVLNKIDL---IPEEERERKIEKMKKKLQKTLE 154 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-H-HHc-CCCEEEEEECccc---CCHHHHHHHHHHHHHHHHHHHH
Confidence 43322233467899999999988654444333321 1 112 4466899999996 22221212223332221 1
Q ss_pred ---HcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 236 ---AMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 236 ---~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
..+++++++||++|+|++++++++...+.-
T Consensus 155 ~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 155 KTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred hcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999887753
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.83 E-value=9.4e-20 Score=169.91 Aligned_cols=146 Identities=17% Similarity=0.192 Sum_probs=112.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 168 (283)
.+||+++|.+|||||||+ ++++... ....+.+..++....+.+++. .+.+|||+|.+.+... ...++
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~--~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI--PLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe--EEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 479999999999999999 9998775 356666667777777777764 5788999998765432 22367
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+++|++++|||++++.++++...|.. ..+.|.++|+||+|+. +.. ... ...+.+++++||++
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~---~~~---~~~-------~~~~~~~i~iSAkt 354 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLT---GEI---DLE-------EENGKPVIRISAKT 354 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhcc---ccc---hhh-------hccCCceEEEEeeC
Confidence 89999999999999988876655543 3456778999999972 111 101 33456899999999
Q ss_pred CcCHHHHHHHHHHHHhC
Q 023335 249 NINVNKIFKFIMAKLFN 265 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~ 265 (283)
|.|++++++++.+.+..
T Consensus 355 g~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 355 GEGIDELREAIKELAFG 371 (449)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999998754
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.83 E-value=7.8e-20 Score=147.51 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch----hhhcccCcEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV----PIACKDAVAILF 176 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~ad~iil 176 (283)
||+++|.+|||||||+ ++.+. +.....+.+.. +.+. .+|||||........ ...++++|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~-~~~~~~~~~v~-------~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGN-YTLARKTQAVE-------FNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCC-CccCccceEEE-------ECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 7999999999999999 86643 33222222222 2222 269999974322111 223689999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC--cEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA--TLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~~ 254 (283)
|||+++.+++. ..|+..+ ....|.++++||+|+ +. ...+.+.+++++.++ +++++||++|+|+++
T Consensus 71 v~d~~~~~s~~--~~~~~~~---~~~~~ii~v~nK~Dl----~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~ 137 (158)
T PRK15467 71 VHGANDPESRL--PAGLLDI---GVSKRQIAVISKTDM----PD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQ 137 (158)
T ss_pred EEeCCCccccc--CHHHHhc---cCCCCeEEEEEcccc----Cc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHH
Confidence 99999887763 3455543 234566899999996 21 124556677777775 899999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|+.+.+.+.+
T Consensus 138 l~~~l~~~~~~ 148 (158)
T PRK15467 138 LVDYLASLTKQ 148 (158)
T ss_pred HHHHHHHhchh
Confidence 99999877644
No 168
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=2.6e-19 Score=143.00 Aligned_cols=145 Identities=20% Similarity=0.213 Sum_probs=99.8
Q ss_pred EEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhhcccCc
Q 023335 104 SLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIACKDAV 172 (283)
Q Consensus 104 ~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~ad 172 (283)
+++|.+|||||||+ ++++.... ...+.++.+........++ ..+.+|||||...+.. ....+++++|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47999999999999 99887533 4444444444444555555 5688999999887654 2345678999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcC
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNIN 251 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~ 251 (283)
++++|+|.++..+.... .+...++.. ..|+++|+||+|+. .. . .. .......+. .++++|+++|.|
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~~--~~piiiv~nK~D~~----~~--~---~~-~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRKS--KKPVILVVNKVDNI----KE--E---DE-AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHhc--CCCEEEEEECcccC----Ch--H---HH-HHHHHhcCCCCeEEEecccCCC
Confidence 99999999876554432 222223322 35668999999962 11 1 11 222344566 789999999999
Q ss_pred HHHHHHHHHHHH
Q 023335 252 VNKIFKFIMAKL 263 (283)
Q Consensus 252 v~~lf~~l~~~i 263 (283)
++++|+++.+.+
T Consensus 146 v~~l~~~l~~~~ 157 (157)
T cd01894 146 IGDLLDAILELL 157 (157)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 169
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.82 E-value=1.6e-19 Score=148.84 Aligned_cols=154 Identities=13% Similarity=0.092 Sum_probs=108.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccc-----------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQ-----------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
+|+++|.+|+|||||+ .+++........ +...+.....+... ...+.+|||+|...+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP--DRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC--CEEEEEEeCCCcHHHHHH
Confidence 4899999999999999 998876653221 11122222222233 467899999999988888
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------- 236 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------- 236 (283)
+..+++.+|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+ ..+.......+.+++..+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDR---VGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCC---cchhcHHHHHHHHHHHHccccccchh
Confidence 8889999999999999988665443 344444443 35677899999997 2222222223444444443
Q ss_pred -------cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 237 -------MKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 237 -------~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
...+++++||++|.|++++|+++.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 346789999999999999999999886
No 170
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.82 E-value=2e-19 Score=172.55 Aligned_cols=155 Identities=12% Similarity=0.181 Sum_probs=116.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc-------ccccc-c------cceeeeeEEEEEE-----CCeEEEEEEEeCCCCCCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE-------QERSL-Q------MAGLNLINKTLMV-----QGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~-------~~~~~-~------t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~ 160 (283)
-+|+++|..++|||||+ +++... +...+ . ..|.++....+.+ ++..+.+++|||||+++|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999 998642 22111 1 2366665554433 567789999999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 240 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
......+++.+|++|+|||+++..+++....|...+. .+.|.|+|+||+|+. ... ..+...++.+.+++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~----~~~---~~~~~~el~~~lg~~ 153 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLP----SAD---PERVKKEIEEVIGLD 153 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCC----ccC---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999877777777765443 245668999999962 111 123334555556653
Q ss_pred ---EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 241 ---LFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 241 ---~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
++++||++|.|++++|++|.+.+..
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 7899999999999999999987743
No 171
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.82 E-value=8.3e-19 Score=158.39 Aligned_cols=249 Identities=16% Similarity=0.156 Sum_probs=165.9
Q ss_pred hhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCc--c----cccccccCCCCCCCCCCc
Q 023335 2 AKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPA--V----RYQKLTRRSSSESSPAPD 75 (283)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~--~----~~~~~~~~~~~~~~p~p~ 75 (283)
+.|..|+..||.+++..+|.||.|.++..-+..+.+.+|+.+-+++++-..--+. . -|..+... .|-|-
T Consensus 71 ~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g-----~~~~I 145 (444)
T COG1160 71 ELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFG-----EPVPI 145 (444)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhhhHHHHHhcCCC-----CceEe
Confidence 3588999999999999999999999999999999999999888888876633221 1 12222221 22233
Q ss_pred ccccccccc------ccccCCCCCCCCC---ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEEC
Q 023335 76 TMEAGLVEL------SRTFSSGYDTDSD---LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQ 143 (283)
Q Consensus 76 ~~~~g~~~~------~~~~~~~~~~~~~---~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~ 143 (283)
.+.+|..-. ..... ..+.... ...+||+++|.||||||||+ ++++.+.. ...+.+..|.....+..+
T Consensus 146 SA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~ 224 (444)
T COG1160 146 SAEHGRGIGDLLDAVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD 224 (444)
T ss_pred ehhhccCHHHHHHHHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEEC
Confidence 344442211 00111 1111111 24699999999999999999 99998876 777766677767777788
Q ss_pred CeEEEEEEEeCCCCCCcccc-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335 144 GARIAFSIWDVGGDSRSFDH-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~ 212 (283)
++. +.+.||+|..+-... ....+..+|++++|.|.+..-+-++.+ ....+.+ ...+.|||.||+
T Consensus 225 ~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKW 299 (444)
T COG1160 225 GRK--YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKW 299 (444)
T ss_pred CeE--EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEcc
Confidence 877 456899996542211 123467999999999999876655432 2222222 255778999999
Q ss_pred CCCCCCCCC--cccchHHHHHHHHHHc-CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 213 DDFVRLPPD--LQWTIATQARAYAKAM-KATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 213 DL~~~l~~~--~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
|+ +..+ ......++++...... .++.+.+||++|.+++++|+.+.+..-
T Consensus 300 Dl---~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 300 DL---VEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred cc---CCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence 97 3321 1111233333322222 357889999999999999999876543
No 172
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.81 E-value=2.6e-19 Score=150.32 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccC-cEEEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA-VAILFMFD 179 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a-d~iilv~D 179 (283)
+|+++|++|||||||+ ++..+.+...++++..+.........+....+.+||+||+++++.....+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999 999988875555444443322222224457799999999999988888899999 99999999
Q ss_pred CCCh-hhHHHHHHHHHHHHhH----CCCCceEEEeecCCCCCC
Q 023335 180 LTSR-CTLNSIVGWYSEARKW----NQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 180 ~~~~-~s~~~~~~~~~~i~~~----~~~~~~ilvgnK~DL~~~ 217 (283)
+++. +++..+..|+..+... .+..|++|++||+|+...
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 9998 7788877666555332 245566899999998543
No 173
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=3e-19 Score=142.40 Aligned_cols=146 Identities=13% Similarity=0.131 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhhhc--cc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC--KD 170 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~~ 170 (283)
++|+++|.||||||||+ ++++.+.. .++|.++.+.....+.+.+. .+.++|+||...... ....++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~--~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ--QVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE--EEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc--eEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 58999999999999999 99999876 88887777877778888774 467899999644332 233444 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
.|++|+|.|+++.+.- .....++.+. ..|.|+|.||+|+ ..+.....+...+++.+|++.+.+||++++
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~--g~P~vvvlN~~D~------a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~ 147 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL--GIPVVVVLNKMDE------AERKGIEIDAEKLSERLGVPVIPVSARTGE 147 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT--TSSEEEEEETHHH------HHHTTEEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc--CCCEEEEEeCHHH------HHHcCCEECHHHHHHHhCCCEEEEEeCCCc
Confidence 9999999999875422 2333344432 4567899999995 222223345778888899999999999999
Q ss_pred CHHHHHHHH
Q 023335 251 NVNKIFKFI 259 (283)
Q Consensus 251 ~v~~lf~~l 259 (283)
|++++++.|
T Consensus 148 g~~~L~~~I 156 (156)
T PF02421_consen 148 GIDELKDAI 156 (156)
T ss_dssp THHHHHHHH
T ss_pred CHHHHHhhC
Confidence 999999875
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=2.5e-18 Score=139.33 Aligned_cols=154 Identities=20% Similarity=0.287 Sum_probs=102.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc----------c-hh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------H-VP 165 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~-~~ 165 (283)
.++|+++|.+|+|||||+ ++++..+. ...+++..+.....+..++.. +.+|||+|...... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999 99887644 444444444444455556544 67899999754311 0 12
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CCcE
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATL 241 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~~~ 241 (283)
.++..+|++++|+|.++..+.... .++..+.. .+.|+++++||+|+. ... ..........+.+.. ..++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~---~~~-~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLV---EKD-SKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccC---Ccc-HHHHHHHHHHHHhhcccccCCce
Confidence 346799999999999998776553 33333332 245668999999972 211 011122222333333 3689
Q ss_pred EEEcCCCCcCHHHHHHHHHHH
Q 023335 242 FFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
+++||++++|++++++++.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 999999999999999998763
No 175
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.80 E-value=8.9e-19 Score=145.77 Aligned_cols=155 Identities=14% Similarity=0.169 Sum_probs=103.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCC----------Ccccchhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS----------RSFDHVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 166 (283)
..++|+++|.+|||||||+ ++++..+. ...++.+.+.......+ ...+.+|||+|.. .+..+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4689999999999999999 99987754 33334443332222222 2578999999943 23334445
Q ss_pred hcccC---cEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 167 ACKDA---VAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 167 ~~~~a---d~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
+++.+ +++++|+|.++..+... +..|+ .. ...+.++++||+|+ ++........+.+.+........+
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l---~~--~~~~~iiv~nK~Dl---~~~~~~~~~~~~i~~~l~~~~~~~ 171 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWL---KE--YGIPVLIVLTKADK---LKKGERKKQLKKVRKALKFGDDEV 171 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHHHHHHHH---HH--cCCcEEEEEECccc---CCHHHHHHHHHHHHHHHHhcCCce
Confidence 55544 67888999887654433 22333 21 23456899999997 333222223344555555556789
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHh
Q 023335 242 FFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+++||+++.|++++|+.|.+.+-
T Consensus 172 ~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 172 ILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999987664
No 176
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=2.1e-18 Score=152.77 Aligned_cols=171 Identities=17% Similarity=0.133 Sum_probs=115.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~ 167 (283)
+.-.|+++|.+|||||||+ ++++.... ...+.+..+........+ ...+.+|||||...... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~--~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTED--DAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcC--CceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4567999999999999999 99988765 333322222222222222 36789999999765322 22335
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSA 246 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa 246 (283)
+.++|++++|+|+++..+- ....+++.+.. .+.|.++|+||+|+ .. ......+....+.+..+ ..++++||
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~~--~~~pvilVlNKiDl---~~--~~~~l~~~~~~l~~~~~~~~i~~iSA 153 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLKK--VKTPVILVLNKIDL---VK--DKEELLPLLEELSELMDFAEIVPISA 153 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHhh--cCCCEEEEEECCcC---CC--CHHHHHHHHHHHHhhCCCCeEEEecC
Confidence 6899999999999883221 11223333332 24567899999997 21 12223455566666555 57899999
Q ss_pred CCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335 247 THNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 279 (283)
+++.|++++++++.+.+...+|....+...+.+
T Consensus 154 ~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~ 186 (292)
T PRK00089 154 LKGDNVDELLDVIAKYLPEGPPYYPEDQITDRP 186 (292)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 999999999999999999988877776555543
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=1.2e-18 Score=161.04 Aligned_cols=155 Identities=15% Similarity=0.144 Sum_probs=109.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccchh------hhccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVP------IACKD 170 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~~~ 170 (283)
.+|+++|.+|||||||+ ++++..+. .+.+.++.+.....+.+.+. ..+.+|||+|..+. ..++. ..+++
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999 99987755 45555556666666666553 24678999997432 12222 23689
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCC
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATH 248 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~ 248 (283)
||++|+|+|++++.+++.+..|...+.... .+.|+++|+||+|+. +.. . .... ....+.+ ++++||++
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~---~~~---~--~~~~--~~~~~~~~~v~ISAkt 346 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML---DDF---E--PRID--RDEENKPIRVWLSAQT 346 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC---Cch---h--HHHH--HHhcCCCceEEEeCCC
Confidence 999999999999988888765555444433 245668999999972 111 0 0111 1123555 48899999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023335 249 NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~ 266 (283)
|.|+++++++|.+.+...
T Consensus 347 G~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 347 GAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCHHHHHHHHHHHhhhc
Confidence 999999999999988543
No 178
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.79 E-value=1.1e-18 Score=143.54 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=96.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccch
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHV 164 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~ 164 (283)
....++|+|+|.+|+|||||+ ++++..+. ...++.+.+.....+..++ .+.+|||+|... +..+.
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 345789999999999999999 99988644 3333434333223333332 588999999532 33333
Q ss_pred hhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--C
Q 023335 165 PIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--A 239 (283)
Q Consensus 165 ~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~ 239 (283)
..|++. ++++++|+|.+++-+..+. .++..+.. ...|.++|+||+|+ ..........+++++..+..+ .
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~---~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADK---LKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccc---CCHHHHHHHHHHHHHHHhhccCCC
Confidence 455553 5799999999886555544 22333332 24566799999997 322222333556666666654 4
Q ss_pred cEEEEcCCCCcCHH
Q 023335 240 TLFFSSATHNINVN 253 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~ 253 (283)
.+|++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 179
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.78 E-value=4.5e-18 Score=162.57 Aligned_cols=156 Identities=11% Similarity=0.078 Sum_probs=105.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
.+..+|+++|..++|||||+ ++.+..+. ...++++.+.....+.+++.. .+.||||||++.|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 34578999999999999999 99988776 333444444444455554332 6889999999999999998999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEcCCCCc
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSSATHNI 250 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~---~~~~~~--~~~~e~Sa~~~~ 250 (283)
+|||+++...-+....| ..+.. .+.|.|+++||+|+. ........+.+.. ....++ .+++++||++|+
T Consensus 164 LVVda~dgv~~qT~e~i-~~~~~--~~vPiIVviNKiDl~----~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGe 236 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHAKA--ANVPIIVAINKIDKP----EANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGD 236 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHHHH--cCCCEEEEEECcccc----cCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCC
Confidence 99999874322222222 22221 245668999999962 1111111122111 112222 468999999999
Q ss_pred CHHHHHHHHHH
Q 023335 251 NVNKIFKFIMA 261 (283)
Q Consensus 251 ~v~~lf~~l~~ 261 (283)
|++++|+++..
T Consensus 237 GI~eLl~~I~~ 247 (587)
T TIGR00487 237 GIDELLDMILL 247 (587)
T ss_pred ChHHHHHhhhh
Confidence 99999999874
No 180
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.78 E-value=1.7e-18 Score=145.41 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=77.7
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 222 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~ 222 (283)
..+.||||||++.|.......+..+|++++|+|+++. .+++.+..| .. ....++|||+||+|+ .....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~-~~~~~iiivvNK~Dl---~~~~~ 154 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EI-MGLKHIIIVQNKIDL---VKEEQ 154 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HH-cCCCcEEEEEEchhc---cCHHH
Confidence 6789999999988877666777889999999999873 333333222 22 122345789999997 22111
Q ss_pred ccchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 223 QWTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 223 ~~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.....++++++++.+ +++++++||++|+|++++|+++.+.+..
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 112234455555543 5689999999999999999999887654
No 181
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=2.9e-18 Score=164.58 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=109.3
Q ss_pred cCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhc--ccCcEEEE
Q 023335 107 GDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC--KDAVAILF 176 (283)
Q Consensus 107 G~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~--~~ad~iil 176 (283)
|++|||||||+ ++.+..+. .++++++.+.....+.+++.. +++|||||++.+... .+.++ .++|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 89999999999 99988876 777877777777777777654 689999999887654 34444 37899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|+|.++.+ ....+..++.+ .+.|.++|+||+|+. ++.....+.+++++..+++++++||++|+|++++|
T Consensus 79 VvDat~le---r~l~l~~ql~~--~~~PiIIVlNK~Dl~------~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 79 VVDASNLE---RNLYLTLQLLE--LGIPMILALNLVDEA------EKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred EecCCcch---hhHHHHHHHHh--cCCCEEEEEehhHHH------HhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHH
Confidence 99998743 22233334433 245668999999961 12223445678888999999999999999999999
Q ss_pred HHHHHHH
Q 023335 257 KFIMAKL 263 (283)
Q Consensus 257 ~~l~~~i 263 (283)
+++.+..
T Consensus 148 ~~i~~~~ 154 (591)
T TIGR00437 148 DAIRKAI 154 (591)
T ss_pred HHHHHHh
Confidence 9998764
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=3.1e-18 Score=159.86 Aligned_cols=146 Identities=19% Similarity=0.266 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhhhcc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIACK 169 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~~ 169 (283)
.+|+++|.+|||||||+ ++++.... ...+.++.+.....+.+++ ..+.+|||+|.+.. ......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999 99987753 5555555566666667766 66899999998862 223445678
Q ss_pred cCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcC
Q 023335 170 DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSA 246 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa 246 (283)
++|++|+|+|+++..+.. .+..|+... +.|+|+|+||+|+. . . .+...++ ..+++ .++++||
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~----~--~---~~~~~~~-~~lg~~~~~~iSa 144 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGP----D--E---EADAYEF-YSLGLGEPYPISA 144 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCc----c--c---hhhHHHH-HhcCCCCCEEEEe
Confidence 999999999998864433 334555432 55778999999951 1 1 1222233 34566 4899999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 023335 247 THNINVNKIFKFIMAKL 263 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i 263 (283)
++|.|++++|+.+.+..
T Consensus 145 ~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 145 EHGRGIGDLLDAILEEL 161 (435)
T ss_pred eCCCCHHHHHHHHHhhC
Confidence 99999999999998843
No 183
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.78 E-value=6.9e-18 Score=135.49 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=100.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~ 168 (283)
..+|+++|.+|+|||||+ ++.+.... ...+.+..... ..........+.+|||+|...... .....+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRI--RGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceE--EEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 578999999999999999 99887654 22221111111 111223346788999999765432 233457
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSAT 247 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~ 247 (283)
..+|++++|+|+++..+.. ...+...+... +.|.++|+||+|+ .. ......+....+....+ .+++++|++
T Consensus 81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl---~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~ 152 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDL---VK--DKEDLLPLLEKLKELGPFAEIFPISAL 152 (168)
T ss_pred HhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhc---cc--cHHHHHHHHHHHHhccCCCceEEEEec
Confidence 8999999999999872211 12333444332 4567899999996 11 12223444445555553 688999999
Q ss_pred CCcCHHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMAK 262 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~ 262 (283)
++.|++++++.|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999999765
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=1.2e-17 Score=155.93 Aligned_cols=248 Identities=17% Similarity=0.184 Sum_probs=144.3
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~ 77 (283)
+..++..++.+.+..++.+|.+.++......+.+.++....+++++-...-... .+..+... .+-+..+
T Consensus 70 ~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~~~~~~~~~lg~~-----~~~~iSa 144 (435)
T PRK00093 70 IREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEEADAYEFYSLGLG-----EPYPISA 144 (435)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccchhhHHHHHhcCCC-----CCEEEEe
Confidence 445566677888888899999887776665566666665555555433111100 11111100 0111111
Q ss_pred ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335 78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA 148 (283)
Q Consensus 78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~ 148 (283)
..|.. .. ................++|+++|.+|+|||||+ ++++.... ...+.+..+.....+..++..
T Consensus 145 ~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~-- 222 (435)
T PRK00093 145 EHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK-- 222 (435)
T ss_pred eCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--
Confidence 11110 00 000000001111234699999999999999999 99977643 555545455444455555544
Q ss_pred EEEEeCCCCCCcccc-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 149 FSIWDVGGDSRSFDH-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 149 l~i~Dt~G~~~~~~~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
+.+|||+|..+.... ...+++.+|++|+|+|+++..+.++.. +...+.. ...+.|+|+||+|+
T Consensus 223 ~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl--- 296 (435)
T PRK00093 223 YTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDL--- 296 (435)
T ss_pred EEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccC---
Confidence 678999996543221 123678999999999999987776643 3333333 24567899999997
Q ss_pred CCCCcccchHHHHHH-HHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 218 LPPDLQWTIATQARA-YAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 218 l~~~~~~~~~~~~~~-~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
..+.......++... +.....++++++||++|.|++++|+.+.+...
T Consensus 297 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 297 VDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 221111112222222 22223578999999999999999999887553
No 185
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.78 E-value=3.3e-18 Score=163.99 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=112.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC---ccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN---EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~---~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+.|+++|..++|||||+ ++++. .+. +...+++.++....+..++ ..+.+||+||+++|......++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 36899999999999999 99863 333 3334555565555666665 67899999999998877778889999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CCcEEEEcCC
Q 023335 176 FMFDLTS---RCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KATLFFSSAT 247 (283)
Q Consensus 176 lv~D~~~---~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~~~~e~Sa~ 247 (283)
+|+|+++ +++++.+. + +.. . +.+ +|+|+||+|+ .+........+++.++++.. +++++++||+
T Consensus 79 LVVDa~~G~~~qT~ehl~-i---l~~-l-gi~~iIVVlNK~Dl---v~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~ 149 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-V---LDL-L-GIPHTIVVITKADR---VNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAK 149 (581)
T ss_pred EEEECCCCCcHHHHHHHH-H---HHH-c-CCCeEEEEEECCCC---CCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCC
Confidence 9999998 44554432 2 222 1 345 6899999997 22221122355666776665 4789999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|+|++++++.+.+.+-..
T Consensus 150 tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 150 TGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCchhHHHHHHHHHHhC
Confidence 9999999999988776544
No 186
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=1e-17 Score=144.17 Aligned_cols=196 Identities=14% Similarity=0.153 Sum_probs=142.8
Q ss_pred hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceeeEEE----EEcCCCCcHHHhH-
Q 023335 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSLKIS----LLGDCQIGKTSFV- 117 (283)
Q Consensus 43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~KI~----vlG~~~vGKSSLi- 117 (283)
.+++++|.||.||.++..+++--.. .|..+..|..+ +...-..++|.+ +||.||+|||||+
T Consensus 149 ~~~~i~arGG~GG~gn~~fls~~~r-----~p~~~~~G~~G---------~e~~~~lELKsiadvGLVG~PNAGKSTLL~ 214 (366)
T KOG1489|consen 149 GDRVIAARGGEGGKGNKFFLSNENR-----SPKFSKPGLNG---------EERVIELELKSIADVGLVGFPNAGKSTLLN 214 (366)
T ss_pred CcEEEEeecCCCCccceeecccccc-----CcccccCCCCC---------ceEEEEEEeeeecccceecCCCCcHHHHHH
Confidence 4678999999998887666652222 34555555444 333334456654 9999999999999
Q ss_pred hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCCh---hhH
Q 023335 118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSR---CTL 186 (283)
Q Consensus 118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~---~s~ 186 (283)
++...+.. ..|+.|+......++.+++.. .+.+-|.||.-+ .+.+-..|+ ..|+..++|+|++.. ..+
T Consensus 215 als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~ 293 (366)
T KOG1489|consen 215 ALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLLFVVDLSGKQLRNPW 293 (366)
T ss_pred HhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhhceEEEEEECCCcccCCHH
Confidence 99988887 888866666655666666543 388899998543 345555555 588999999999988 888
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCHHHHHHHHHH
Q 023335 187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
+.++.+..++..|.. +.|.+||+||+|+ ++. ..+.+.++++...-+ ++++||++++|+.++++.|-+
T Consensus 294 ~~~~lL~~ELe~yek~L~~rp~liVaNKiD~----~ea----e~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 294 QQLQLLIEELELYEKGLADRPALIVANKIDL----PEA----EKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred HHHHHHHHHHHHHhhhhccCceEEEEeccCc----hhH----HHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 888888888877743 5677899999995 211 123346777777655 899999999999999887754
No 187
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.77 E-value=5.8e-18 Score=164.22 Aligned_cols=156 Identities=13% Similarity=0.101 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccc--eeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~--~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
.+..+|+|+|..++|||||+ ++.+..+. ....+. ....+...+..++....+.||||||++.|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 35678999999999999999 99887776 333222 222333334444556889999999999999999999999999
Q ss_pred EEEEEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH---HHHHcC--CcEEEEc
Q 023335 174 ILFMFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA---YAKAMK--ATLFFSS 245 (283)
Q Consensus 174 iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~---~~~~~~--~~~~e~S 245 (283)
+|+|+|+++. .+++.+. .+.. .+.|.|+++||+|+. ........+++.. +...++ ++++++|
T Consensus 322 aILVVDA~dGv~~QT~E~I~----~~k~--~~iPiIVViNKiDl~----~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAIN----YIQA--ANVPIIVAINKIDKA----NANTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred EEEEEECcCCCChhhHHHHH----HHHh--cCceEEEEEECCCcc----ccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 9999999874 3443332 2221 245668999999962 2111111222221 123333 6899999
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 023335 246 ATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i 263 (283)
|++|.|++++|++|....
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999988754
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.77 E-value=5.5e-18 Score=166.51 Aligned_cols=249 Identities=16% Similarity=0.136 Sum_probs=147.2
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~ 77 (283)
+..++..++......++.+|.+.++......+.+.++...-+++++-...-... .+..+.. ..+-|..+
T Consensus 344 ~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~-----~~~~~iSA 418 (712)
T PRK09518 344 IASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEYDAAEFWKLGL-----GEPYPISA 418 (712)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchhhHHHHHHcCC-----CCeEEEEC
Confidence 445566666777788888999888776666555666665555555433111000 0111100 00111111
Q ss_pred ccccc--cc----ccccCCCCCCC---CCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCe
Q 023335 78 EAGLV--EL----SRTFSSGYDTD---SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGA 145 (283)
Q Consensus 78 ~~g~~--~~----~~~~~~~~~~~---~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~ 145 (283)
..|.. .. ........... .....+||+++|.+|||||||+ ++++.+.. ..+++++.+.....+.+++.
T Consensus 419 ~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~ 498 (712)
T PRK09518 419 MHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE 498 (712)
T ss_pred CCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC
Confidence 11211 00 00000000000 0123479999999999999999 99998753 66666666766667777776
Q ss_pred EEEEEEEeCCCCCC----------cccch-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 146 RIAFSIWDVGGDSR----------SFDHV-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~----------~~~~~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
. +.+|||+|..+ |..+. ..+++.+|++++|+|+++..++++.. ++..+.. .+.|.|||+||+||
T Consensus 499 ~--~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL 573 (712)
T PRK09518 499 D--WLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDL 573 (712)
T ss_pred E--EEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhc
Confidence 5 55899999642 11111 23468999999999999998888765 3444433 24577899999997
Q ss_pred CCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 215 FVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.+.........+....... ...+.+++||++|.|++++|+.+.+.+.+
T Consensus 574 ---~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 574 ---MDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ---CChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2221111111111111111 13467899999999999999999987765
No 189
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.9e-18 Score=131.12 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=119.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
++.+|.++|..|+|||+++ ++--++.....||.|++.. ++ ..++.++++||.+|+...+.+|+.||.+.|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve--~v--~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVE--TV--PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCcc--cc--ccccccceeeEccCcccccHHHHHHhcccceEEEE
Confidence 5789999999999999999 9988888888899887754 33 33678899999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHH-----HHHHHHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIV-GWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQA-----RAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~-~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~e~Sa~~~~ 250 (283)
+|.+|++...-.. .++..+.+- ......++++||.|. +.. ....++ ..-.+..-+.+|++||.+|+
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~----~~~---~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~ 165 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDY----SGA---LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGE 165 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccc----hhh---hhHHHHHHHhChHHHhhheeEEEeecccccc
Confidence 9999988665554 333333332 234566799999994 221 111111 11122233678999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 023335 251 NVNKIFKFIMAKLFN 265 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~ 265 (283)
|+++.++|+.+.+..
T Consensus 166 Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 166 GLDPAMDWLQRPLKS 180 (182)
T ss_pred CCcHHHHHHHHHHhc
Confidence 999999999988754
No 190
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.76 E-value=1.9e-17 Score=162.00 Aligned_cols=154 Identities=11% Similarity=0.079 Sum_probs=107.7
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
..+...|+|+|..++|||||+ ++.+..+. ........+.....+.+++ ..+.||||||++.|..++..+++.+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 456688999999999999999 99887766 3333333333334455555 5688999999999999999899999999
Q ss_pred EEEEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH---HHHHHcC--CcEEEEcC
Q 023335 175 LFMFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR---AYAKAMK--ATLFFSSA 246 (283)
Q Consensus 175 ilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~---~~~~~~~--~~~~e~Sa 246 (283)
|||||+++. ++++.+ ..+. ..+.|+||++||+|+. ......+..++. .++..++ ++++++||
T Consensus 365 ILVVdAddGv~~qT~e~i----~~a~--~~~vPiIVviNKiDl~----~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSA 434 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI----NHAK--AAGVPIIVAINKIDKP----GANPDRVKQELSEYGLVPEEWGGDTIFVPVSA 434 (787)
T ss_pred EEEEECCCCCCHhHHHHH----HHHH--hcCCcEEEEEECcccc----ccCHHHHHHHHHHhcccHHHhCCCceEEEEeC
Confidence 999999874 333332 1122 1245668999999962 111111222221 1233444 68999999
Q ss_pred CCCcCHHHHHHHHHHH
Q 023335 247 THNINVNKIFKFIMAK 262 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~ 262 (283)
++|.||+++|++|...
T Consensus 435 ktG~GI~eLle~I~~~ 450 (787)
T PRK05306 435 KTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCchHHHHhhhhh
Confidence 9999999999998753
No 191
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=3.5e-17 Score=140.22 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=101.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----c---chhhhcccCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKDAV 172 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~ad 172 (283)
+|+++|.+|||||||+ ++.+.... ..++.+..+.....+.+++ ..+++||+||..... . ....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 7899999999999999 99887644 5555444455555666665 468889999975432 1 2234689999
Q ss_pred EEEEEEECCChh-hHHHHHHHHH--------------------------------------------HHHhHC-------
Q 023335 173 AILFMFDLTSRC-TLNSIVGWYS--------------------------------------------EARKWN------- 200 (283)
Q Consensus 173 ~iilv~D~~~~~-s~~~~~~~~~--------------------------------------------~i~~~~------- 200 (283)
++++|+|+++.+ ..+.+.+.++ +..-++
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998765 3333322222 111000
Q ss_pred ---------------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 201 ---------------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 201 ---------------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
...|.++|+||+|+ . ..+++..+++. ..++++||++|.|++++|+.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl---~-------~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDL---I-------SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccC---C-------CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 11244799999996 1 13344455553 4589999999999999999998865
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=1.7e-17 Score=154.59 Aligned_cols=148 Identities=21% Similarity=0.263 Sum_probs=105.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhhccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIACKD 170 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~~~~ 170 (283)
||+++|.+|||||||+ ++++.... ...+.+..+.....+.+++. .+.+|||||... +......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999 99987753 45555555555556666664 488999999643 33445567899
Q ss_pred CcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023335 171 AVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT 247 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 247 (283)
+|++++|+|.++..+..+ +..|+. + .+.|.++|+||+|+. ... . ...+ ...+++ .++++||+
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~--~~~piilVvNK~D~~---~~~---~---~~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLR---K--SGKPVILVANKIDGK---KED---A---VAAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---H--hCCCEEEEEECccCC---ccc---c---cHHH-HHhcCCCCeEEEeCC
Confidence 999999999987644433 334443 2 245678999999962 111 1 1122 235566 78999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|.|++++++++.+.+...
T Consensus 144 ~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPEE 162 (429)
T ss_pred cCCChHHHHHHHHHhcCcc
Confidence 9999999999999887553
No 193
>COG1159 Era GTPase [General function prediction only]
Probab=99.75 E-value=5e-17 Score=139.71 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=120.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chhh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVPI 166 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~ 166 (283)
.+.--|+++|.||||||||+ ++++.+.. +..+.+.-+.....+..+ +.++.+.||||-.+-.. ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 45677999999999999999 99999877 666633333333333333 56788999999765322 2344
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
.+.++|+++||+|+++...-. -...++.++. .+.|+|++.||+|. ..++. ........+...... ..+++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~---~~~~~--~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDK---VKPKT--VLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred HhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEcccc---CCcHH--HHHHHHHHHHhhCCcceEEEee
Confidence 678999999999998743221 1233444444 34577999999996 22211 112333333333333 678899
Q ss_pred CCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335 246 ATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 279 (283)
|++|.|++.+.+.+...+.+.+|....+..+++|
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~ 187 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRP 187 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcCChhhccCCh
Confidence 9999999999999999999999999888777765
No 194
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.74 E-value=3.4e-17 Score=157.32 Aligned_cols=156 Identities=13% Similarity=0.195 Sum_probs=112.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc--cc---------ccc---ccceeeeeEEEEEE-----CCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~ 159 (283)
-.+|+++|..++|||||+ +++... +. +.. .+.|.++....+.+ ++..+.+++|||||+..
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 358999999999999999 997531 11 111 12355544433333 56678999999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 239 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (283)
|...+..+++.+|++|+|+|+++....+....|..... .+.|.|+|+||+|+ .... ......++.+.+++
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl----~~a~---~~~v~~ei~~~lg~ 156 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDL----PAAD---PERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCC----Cccc---HHHHHHHHHHHhCC
Confidence 99889999999999999999998766666666654432 24566899999996 2111 12223344444565
Q ss_pred c---EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 240 T---LFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 240 ~---~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
. ++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 157 DASDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred CcceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 4 8999999999999999999988754
No 195
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.6e-18 Score=136.62 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCcc---c-----cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhh
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQ---E-----RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 167 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~-----~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 167 (283)
....+.|+|+|..++|||||+ +...... . .-.+|.|.+.. ++.++ ...+.+||.+||+..+++|..|
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig--~i~v~--~~~l~fwdlgGQe~lrSlw~~y 89 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG--TIEVC--NAPLSFWDLGGQESLRSLWKKY 89 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeec--ceeec--cceeEEEEcCChHHHHHHHHHH
Confidence 345688999999999999999 7643221 1 23346666654 44444 4558899999999999999999
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHc---CC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM---KA 239 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~---~~ 239 (283)
|..++++|+++|.++++-|+....-++.+... ....|.++.+||.|+.+.. ...++... ++.. .+
T Consensus 90 Y~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~-------~~~El~~~~~~~e~~~~rd~ 162 (197)
T KOG0076|consen 90 YWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM-------EAAELDGVFGLAELIPRRDN 162 (197)
T ss_pred HHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh-------hHHHHHHHhhhhhhcCCccC
Confidence 99999999999999999999887666666554 2345557889999963211 12222222 3333 35
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 240 TLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
++..+||.+|+||++-.+|+++.+..+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHHhhc
Confidence 678899999999999999999998766
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=4.6e-17 Score=131.07 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccchhhhcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIACK 169 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~ 169 (283)
+|+++|.+|+|||||+ .++++.+. ...++.+.+.....+..++ .+.+|||+|... +......|+.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 4899999999999999 99966655 3444545444444444443 788999999433 2333344444
Q ss_pred ---cCcEEEEEEECCChhh--HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--HcCCcEE
Q 023335 170 ---DAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK--AMKATLF 242 (283)
Q Consensus 170 ---~ad~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~ 242 (283)
..+++++++|.++..+ ...+..|+... ..|.++|+||+|+ .................+ ....+++
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~---~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADK---LKKSELAKALKEIKKELKLFEIDPPII 149 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhc---CChHHHHHHHHHHHHHHHhccCCCceE
Confidence 4578899999986532 22334555443 3456899999996 333222222333333333 3446789
Q ss_pred EEcCCCCcCHHHHHHHHHHH
Q 023335 243 FSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~ 262 (283)
++||+++.|+.+++++|.+.
T Consensus 150 ~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 150 LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred EEecCCCCCHHHHHHHHHHh
Confidence 99999999999999999875
No 197
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.73 E-value=7.6e-18 Score=154.93 Aligned_cols=164 Identities=21% Similarity=0.225 Sum_probs=121.1
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
....++|+++|+.|||||||| .++..+|.+..|..-..+ ..-..+.-..+...+.|++..+..+.....-++.||++.
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i-~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRI-LIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCcc-ccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 445799999999999999999 999999986665332111 011222234455788999877766666677789999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-C-cEEEEcCCCC
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-A-TLFFSSATHN 249 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~-~~~e~Sa~~~ 249 (283)
++|+++++++++.+. .|+..+++.. .+.|+||||||+|+...... .++.+...+..++. + ..++|||++.
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----s~e~~~~pim~~f~EiEtciecSA~~~ 160 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----SDEVNTLPIMIAFAEIETCIECSALTL 160 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----chhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence 999999999999996 8999999986 57788999999997322111 11222333333332 2 4789999999
Q ss_pred cCHHHHHHHHHHHHhC
Q 023335 250 INVNKIFKFIMAKLFN 265 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~ 265 (283)
.++.++|...-+.++.
T Consensus 161 ~n~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 161 ANVSELFYYAQKAVIH 176 (625)
T ss_pred hhhHhhhhhhhheeec
Confidence 9999999998877654
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.73 E-value=7.7e-17 Score=127.94 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=100.1
Q ss_pred EEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hhhcccCcEE
Q 023335 105 LLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIACKDAVAI 174 (283)
Q Consensus 105 vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~~~~ad~i 174 (283)
++|.+|+|||||+ ++++.... ...++............+. ...+.+||++|...+.... ..+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999 98876655 2233333333333333321 4578999999987764333 3477999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHH-HHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT-QARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
++|+|.++..+..... |...... ...|.++|+||+|+ ..........+ .........+.+++++||+++.|++
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~ 153 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDL---LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGID 153 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEcccc---CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHH
Confidence 9999999987766654 3333322 34566899999997 22211111110 1223333446789999999999999
Q ss_pred HHHHHHHHH
Q 023335 254 KIFKFIMAK 262 (283)
Q Consensus 254 ~lf~~l~~~ 262 (283)
++++++.+.
T Consensus 154 ~l~~~l~~~ 162 (163)
T cd00880 154 ELREALIEA 162 (163)
T ss_pred HHHHHHHhh
Confidence 999999875
No 199
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.73 E-value=1.2e-16 Score=156.96 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=110.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----------hhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~~ 166 (283)
+.++|+++|.+|||||||+ ++.+.... .+.+.+..+..... ++.....+.+|||||...+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 3579999999999999999 99887655 55554444443333 4444567889999998776432 223
Q ss_pred hc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 167 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 167 ~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
++ .++|++++|+|.++.+. ...|..++.+. +.|.++|.||+|+. ++.....+.+++.+.+|++++++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e~--giPvIvVlNK~Dl~------~~~~i~id~~~L~~~LG~pVvpi 148 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLEL--GIPCIVALNMLDIA------EKQNIRIDIDALSARLGCPVIPL 148 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHHc--CCCEEEEEEchhhh------hccCcHHHHHHHHHHhCCCEEEE
Confidence 43 48999999999988643 23344555443 45678999999961 12233556778888999999999
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i 263 (283)
||++|+|++++++.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999987764
No 200
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.73 E-value=2.3e-17 Score=125.85 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=115.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
.+++||.++|-.++|||||+ .+.+.....-.||.|++. +.+.+++ .+.+.+||.+|+...+.+|..||.+.|++|+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~--k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIy 91 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT--KKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIY 91 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce--EEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEE
Confidence 46899999999999999999 777766667777888664 4555654 6789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHc--------CCcEEEEcC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--------KATLFFSSA 246 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~e~Sa 246 (283)
|+|.+|+.-|+++..-+-++..-.. ...| .+.+||.|+. ... ..++.+.+. ...+-++||
T Consensus 92 VIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll---taa-------~~eeia~klnl~~lrdRswhIq~csa 161 (185)
T KOG0074|consen 92 VIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL---TAA-------KVEEIALKLNLAGLRDRSWHIQECSA 161 (185)
T ss_pred EEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH---hhc-------chHHHHHhcchhhhhhceEEeeeCcc
Confidence 9999999999988765655554322 3344 5789999972 221 122222222 234567999
Q ss_pred CCCcCHHHHHHHHHHH
Q 023335 247 THNINVNKIFKFIMAK 262 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~ 262 (283)
.+++|+.+-.+|+...
T Consensus 162 ls~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSN 177 (185)
T ss_pred ccccCccCcchhhhcC
Confidence 9999999888887653
No 201
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=1.1e-16 Score=157.38 Aligned_cols=154 Identities=18% Similarity=0.186 Sum_probs=104.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~ 167 (283)
...+|+|+|.+|||||||+ ++++.... ...++++.+........++ ..+.+|||+|.+.. ......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 3578999999999999999 99987654 4455444454444444555 45788999997642 2233456
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
++.+|++|+|+|+++.-+..+ ..|.+.++. .+.|+|+|+||+|+. .. . ......+...++ ..|++||+
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~----~~--~--~~~~~~~~lg~~-~~~~iSA~ 419 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQ----AS--E--YDAAEFWKLGLG-EPYPISAM 419 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccc----cc--h--hhHHHHHHcCCC-CeEEEECC
Confidence 889999999999986422211 245555543 356778999999962 11 1 111222222222 35789999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|.||+++|+++++.+.+.
T Consensus 420 ~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 420 HGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCchHHHHHHHHhcccc
Confidence 9999999999999988653
No 202
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.72 E-value=4.3e-17 Score=151.60 Aligned_cols=155 Identities=16% Similarity=0.121 Sum_probs=99.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cc-------------------------c---ccceeeeeEEEEEECCeE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RS-------------------------L---QMAGLNLINKTLMVQGAR 146 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~-------------------------~---~t~~~~~~~~~~~~~~~~ 146 (283)
...++|+++|.+++|||||+ +++...-. .. . ...|.+.......++...
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45799999999999999999 99732111 00 0 012333333333444456
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc--
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-- 223 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-- 223 (283)
+.+.+|||||+++|.......+..+|++|+|+|+++..++... ..++..+.. ....++++++||+|+. .....
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~~~iivviNK~Dl~---~~~~~~~ 159 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGINQLIVAINKMDAV---NYDEKRY 159 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCCCeEEEEEEccccc---cccHHHH
Confidence 7899999999988866555557899999999999873222111 222222322 2223457899999972 11111
Q ss_pred cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335 224 WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 224 ~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf 256 (283)
....+++.++++..+ ++++++||++|+|+++++
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 123566777776666 468999999999998754
No 203
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=3.8e-17 Score=152.01 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=102.5
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhc--Ccccc------------------------------ccccceeeeeEEEEEEC
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVG--NEQER------------------------------SLQMAGLNLINKTLMVQ 143 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 143 (283)
....++|+++|..++|||||+ +++. +.... .....+.+.. ...+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~--~~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA--HWKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE--EEEEc
Confidence 345799999999999999999 9975 21110 0112233333 33344
Q ss_pred CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHH--HHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
...+.+.+|||+|++.|.......+..+|++++|+|+++.+++.... .++. +.......+.|||+||+|+... .++
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~~~~~iIVviNK~Dl~~~-~~~ 159 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTLGINQLIVAINKMDSVNY-DEE 159 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHcCCCeEEEEEEChhccCc-cHH
Confidence 44578899999999988666666678999999999999886432211 1111 2222223345789999997210 111
Q ss_pred cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335 222 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf 256 (283)
......++++++++..+ ++++++||++|.|+++.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 11233567778887776 568999999999998744
No 204
>PRK10218 GTP-binding protein; Provisional
Probab=99.70 E-value=3.5e-16 Score=149.90 Aligned_cols=159 Identities=15% Similarity=0.146 Sum_probs=115.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc--Cccccc-------------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG--NEQERS-------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~--~~~~~~-------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
-.+|+|+|..++|||||+ +++. +.+... ..+.|.++..+...++...+.+++|||+|+..|...
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 358999999999999999 9986 333321 124567777777777777789999999999999999
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------- 236 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------- 236 (283)
+..+++.+|++|+|+|+++....+. ..++..+.. .+.|+|++.||+|+. ........+++..+...
T Consensus 85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~----~a~~~~vl~ei~~l~~~l~~~~~~ 157 (607)
T PRK10218 85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRP----GARPDWVVDQVFDLFVNLDATDEQ 157 (607)
T ss_pred HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCC----CCchhHHHHHHHHHHhccCccccc
Confidence 9999999999999999987543322 333333333 245678999999962 22222334444444322
Q ss_pred cCCcEEEEcCCCCc----------CHHHHHHHHHHHHhC
Q 023335 237 MKATLFFSSATHNI----------NVNKIFKFIMAKLFN 265 (283)
Q Consensus 237 ~~~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~ 265 (283)
..++++.+||++|. |+..+|+.|++.+..
T Consensus 158 ~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~ 196 (607)
T PRK10218 158 LDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPA 196 (607)
T ss_pred cCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCC
Confidence 34678999999998 588999988887753
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.70 E-value=3e-16 Score=149.93 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=100.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEEE------------ECCeEEEEEEEeCCCCCCcc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTLM------------VQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~~------------~~~~~~~l~i~Dt~G~~~~~ 161 (283)
..-|+++|.+++|||||+ ++.+..+....+ +.|..+...... ++.....+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 346999999999999999 999887763222 233333221110 00111238899999999999
Q ss_pred cchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----------ccchH
Q 023335 162 DHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----------QWTIA 227 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----------~~~~~ 227 (283)
.++..+++.+|++++|||+++ +.+++.+..+ +. .+.|.|+++||+|+........ ...+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 999999999999999999987 4555554322 22 2456689999999742111100 00000
Q ss_pred H--------HHHHHHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 228 T--------QARAYAK------------AM--KATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 228 ~--------~~~~~~~------------~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
. ...++++ .+ .++++++||++|+|+++++.++...
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 0 0111121 11 2578999999999999999988653
No 206
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.70 E-value=5.8e-17 Score=134.44 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=104.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cc-------------c---ccceeeeeEEEEEEC--CeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS-------------L---QMAGLNLINKTLMVQ--GARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~-------------~---~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~ 159 (283)
.++|+++|..++|||||+ +++...-. .. . ...+.........+. .....+.++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 578999999999999999 88754321 00 0 011222222222232 4456789999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH-HHHHHcC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR-AYAKAMK 238 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~-~~~~~~~ 238 (283)
|.......++.+|++|+|+|+.+.-.... ...+..+... +.|.|+|.||+|+ . ........++.. .+.+..+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~--~~p~ivvlNK~D~---~-~~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL--GIPIIVVLNKMDL---I-EKELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT--T-SEEEEEETCTS---S-HHHHHHHHHHHHHHHHHHTT
T ss_pred eeecccceecccccceeeeeccccccccc-cccccccccc--ccceEEeeeeccc---h-hhhHHHHHHHHHHHhccccc
Confidence 88877778899999999999987644332 2333334332 3457899999996 2 111222233333 4545443
Q ss_pred ------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 239 ------ATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 239 ------~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
++++.+||++|.|++++++.+.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999988763
No 207
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=8.9e-16 Score=122.74 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=114.0
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc---------ccc----ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE---------RSL----QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------~~~----~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 161 (283)
......||+|+|+.++||||++ ++...... +.. .|+..++... .+++ ...+++++||||++|+
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~~-~~~v~LfgtPGq~RF~ 82 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELDE-DTGVHLFGTPGQERFK 82 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEcC-cceEEEecCCCcHHHH
Confidence 3456889999999999999999 88766531 111 1334454433 3332 3457889999999999
Q ss_pred cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH--cCC
Q 023335 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA--MKA 239 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~--~~~ 239 (283)
-++..+++++.+.|+++|.+....+ .....++.+...++ .|.+|.+||.||+...+ .++++++.+. ...
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~p-------pe~i~e~l~~~~~~~ 153 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRNP-IPVVVAINKQDLFDALP-------PEKIREALKLELLSV 153 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhccC-CCEEEEeeccccCCCCC-------HHHHHHHHHhccCCC
Confidence 9999999999999999999999988 44555665555443 44468899999854433 3334444443 378
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHH
Q 023335 240 TLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
+.++++|..+++..+.++.+...
T Consensus 154 ~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 154 PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ceeeeecccchhHHHHHHHHHhh
Confidence 99999999999999998888776
No 208
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.69 E-value=7.4e-16 Score=139.42 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=108.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIAC 168 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~~ 168 (283)
..|+++|.||||||||. |+++.+.. +++|.+.-|.......+.+.. +.+.||+|-+... ......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999 99999877 888866666666677777766 7889999977533 1234467
Q ss_pred ccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335 169 KDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
..||++|||+|....-+-+ .+.+|+. ..++|.|||+||+|- . ..++...+|. .+|+ ..+.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~ia~~Lr-----~~~kpviLvvNK~D~----~-----~~e~~~~efy-slG~g~~~~IS 146 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEIAKILR-----RSKKPVILVVNKIDN----L-----KAEELAYEFY-SLGFGEPVPIS 146 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHHHHHHH-----hcCCCEEEEEEcccC----c-----hhhhhHHHHH-hcCCCCceEee
Confidence 8999999999987643322 2233433 235678999999993 1 1123333333 3455 688899
Q ss_pred CCCCcCHHHHHHHHHHHHh
Q 023335 246 ATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~ 264 (283)
|.+|.|+.++++.+++.+.
T Consensus 147 A~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhhccCHHHHHHHHHhhcC
Confidence 9999999999999999984
No 209
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.68 E-value=2.5e-16 Score=145.51 Aligned_cols=162 Identities=14% Similarity=0.164 Sum_probs=102.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcccc---ccc---cceeeeeE----------------EEEEECC------eEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER---SLQ---MAGLNLIN----------------KTLMVQG------ARIAF 149 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~---~~~---t~~~~~~~----------------~~~~~~~------~~~~l 149 (283)
..++|+++|..++|||||+ ++.+..... ... |....+.. .....++ ....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4789999999999999999 886532211 100 11111100 0000011 13578
Q ss_pred EEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335 150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 229 (283)
Q Consensus 150 ~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~ 229 (283)
.+||+||+++|.......+..+|++++|+|+++..........+..+.. ....++|+|+||+|+ .+.+......++
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl---~~~~~~~~~~~~ 158 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDL---VSKEKALENYEE 158 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEcccc---CCHHHHHHHHHH
Confidence 9999999999877777777889999999999864311111222222222 222345789999997 222111122345
Q ss_pred HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 230 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 230 ~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+.++.+.. +++++++||++|+|+++++++|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 55555543 578999999999999999999988664
No 210
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.68 E-value=2.1e-16 Score=133.70 Aligned_cols=149 Identities=19% Similarity=0.322 Sum_probs=97.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccc-----------c-------ccceeeeeEEEEEE-----CCeEEEEEEEeCCCC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERS-----------L-------QMAGLNLINKTLMV-----QGARIAFSIWDVGGD 157 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~-----------~-------~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~ 157 (283)
+|+++|..++|||||+ +++....... + ...|.++....+.+ ++..+.+.+|||+|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999 9986543311 0 11233332222222 356789999999999
Q ss_pred CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCC---CCCCCc----ccchHHHH
Q 023335 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV---RLPPDL----QWTIATQA 230 (283)
Q Consensus 158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~---~l~~~~----~~~~~~~~ 230 (283)
+.|......++..+|++++|+|+++..++.. ..|+..+.. ...|.++|+||+|+.. .++... -....+++
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~ 158 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEV 158 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHH
Confidence 9998888889999999999999988776643 345554433 2356689999999631 011111 11123445
Q ss_pred HHHHHHcCC-------c----EEEEcCCCCcCHH
Q 023335 231 RAYAKAMKA-------T----LFFSSATHNINVN 253 (283)
Q Consensus 231 ~~~~~~~~~-------~----~~e~Sa~~~~~v~ 253 (283)
..+++.++. + +++.|++.+.++.
T Consensus 159 n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~ 192 (213)
T cd04167 159 NNIIASFSTTLSFLFSPENGNVCFASSKFGFCFT 192 (213)
T ss_pred HHHHHHhcCCCceEeccCCCeEEEEecCCCeEEe
Confidence 555655543 2 6688999887765
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.68 E-value=4.4e-16 Score=149.25 Aligned_cols=158 Identities=15% Similarity=0.190 Sum_probs=114.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc--Ccccccc-------------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh
Q 023335 102 KISLLGDCQIGKTSFV-KYVG--NEQERSL-------------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 165 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~--~~~~~~~-------------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 165 (283)
+|+|+|..++|||||+ +++. +.+.... ...|.++..+...+....+.+++|||||+..|.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6999999999999999 9985 3332110 1235555555555555567899999999999988888
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-------HcC
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------AMK 238 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-------~~~ 238 (283)
.+++.+|++++|+|+++. .......|+..+... +.|+|+|+||+|+ .......+.+++.++.. ...
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~~--~ip~IVviNKiD~----~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALEL--GLKPIVVINKIDR----PSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHHC--CCCEEEEEECCCC----CCcCHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999864 234445666666553 3566899999996 22222223444555443 235
Q ss_pred CcEEEEcCCCCc----------CHHHHHHHHHHHHhCC
Q 023335 239 ATLFFSSATHNI----------NVNKIFKFIMAKLFNL 266 (283)
Q Consensus 239 ~~~~e~Sa~~~~----------~v~~lf~~l~~~i~~~ 266 (283)
++++++||++|. |++.+|+.+++.+...
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 678999999995 7999999999887543
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.68 E-value=2.1e-16 Score=133.15 Aligned_cols=149 Identities=15% Similarity=0.078 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-c--------------------------ccc---cceeeeeEEEEEECCeEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-R--------------------------SLQ---MAGLNLINKTLMVQGARIAFS 150 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~--------------------------~~~---t~~~~~~~~~~~~~~~~~~l~ 150 (283)
+|+++|.+|+|||||+ +++...-. . ..+ ..|.........+......+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999 88643211 1 000 012222222222222345678
Q ss_pred EEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc--ccchHH
Q 023335 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL--QWTIAT 228 (283)
Q Consensus 151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~--~~~~~~ 228 (283)
+|||||+++|.......++.+|++|+|+|+++...-+. ..+...+.. ....+.|+|+||+|+. .... ......
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~~~-~~~~~iIvviNK~D~~---~~~~~~~~~i~~ 155 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYILSL-LGIRHVVVAVNKMDLV---DYSEEVFEEIVA 155 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHHHH-cCCCcEEEEEEchhcc---cCCHHHHHHHHH
Confidence 99999998876555667899999999999987532111 122222222 2222346789999962 1111 112345
Q ss_pred HHHHHHHHcCC---cEEEEcCCCCcCHHHH
Q 023335 229 QARAYAKAMKA---TLFFSSATHNINVNKI 255 (283)
Q Consensus 229 ~~~~~~~~~~~---~~~e~Sa~~~~~v~~l 255 (283)
+++++++.++. +++.+||++|.|+++.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 66677777774 4889999999999854
No 213
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.66 E-value=8.3e-16 Score=142.02 Aligned_cols=160 Identities=15% Similarity=0.181 Sum_probs=99.2
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc---cc-cc--cceeeeeEEEE----------------EEC--C----eEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE---RS-LQ--MAGLNLINKTL----------------MVQ--G----ARI 147 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---~~-~~--t~~~~~~~~~~----------------~~~--~----~~~ 147 (283)
....++|+++|..++|||||+ ++.+.... +. .. |....+....+ .++ + ...
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 345799999999999999999 88553111 11 01 21111110000 011 1 135
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 223 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~ 223 (283)
.+.+|||||++.|..........+|++++|+|+++. ++.+.+. .+.. ....++++|+||+|+ .+.+..
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l~~-~~i~~iiVVlNK~Dl---~~~~~~ 157 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----ALDI-IGIKNIVIVQNKIDL---VSKERA 157 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HHHH-cCCCcEEEEEEeecc---ccchhH
Confidence 789999999988755444445567999999999964 3333322 2222 222345899999997 222211
Q ss_pred cchHHHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 224 WTIATQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 224 ~~~~~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
....+++..+++.. +.+++++||++|+|++++++.|...+.
T Consensus 158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 11234555555442 568999999999999999999988764
No 214
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.66 E-value=1.5e-15 Score=130.22 Aligned_cols=182 Identities=14% Similarity=0.221 Sum_probs=116.6
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------
Q 023335 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------- 160 (283)
Q Consensus 93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------- 160 (283)
+..+..+.+.|+|||.||||||||. .+++.+.. .... |+.-.. .-.+.....++.|+||||.-.-
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~i---lgi~ts~eTQlvf~DTPGlvs~~~~r~~~l 141 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRI---LGIITSGETQLVFYDTPGLVSKKMHRRHHL 141 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeee---eEEEecCceEEEEecCCcccccchhhhHHH
Confidence 4466677899999999999999999 99998866 2222 433222 2223344567899999994321
Q ss_pred ----ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC----------CCCCcccc-
Q 023335 161 ----FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR----------LPPDLQWT- 225 (283)
Q Consensus 161 ----~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~----------l~~~~~~~- 225 (283)
..-....+..||++++|+|+++....-+ ...+..++.+. ..|-|+|.||.|+..+ +.+.....
T Consensus 142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys-~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS-KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh-cCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 1112345679999999999997322211 13445555543 4455999999996211 00100000
Q ss_pred hHHHHHHHHHH---------cCC----cEEEEcCCCCcCHHHHHHHHHHHHhCCccccccccCCCCC
Q 023335 226 IATQARAYAKA---------MKA----TLFFSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 226 ~~~~~~~~~~~---------~~~----~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~ 279 (283)
..+..+++... .|. .+|.+||++|+||+++-++|+..+...+|+.......+++
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccC
Confidence 01111111111 112 2678999999999999999999999999999888776654
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.66 E-value=1.5e-15 Score=137.84 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=110.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------hhhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------VPIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~ 168 (283)
-+|++++|.||||||||+ .+++.... .+.+.|.-|.....+.++|.. +.+.||+|..+-.+. ....+
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 589999999999999999 99988766 888877788888888898855 677999997654433 23457
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
++||.+++|+|.+...+-++. ..+. ....+.+.++|.||.||. +... ...+.-..+.+.+.+||++
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~---~~~~-------~~~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLV---SKIE-------LESEKLANGDAIISISAKT 360 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcc---cccc-------cchhhccCCCceEEEEecC
Confidence 899999999999986332221 1122 233456778999999972 1111 1111112244689999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023335 249 NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~ 266 (283)
|+|++++.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999998888665
No 216
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.66 E-value=1.6e-15 Score=146.14 Aligned_cols=154 Identities=14% Similarity=0.113 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc---cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE---QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
-|.++|..++|||||+ ++.+.. +. +.......+.....+...+ ...+.+|||||+++|.......+.++|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999 998532 22 2212222332222232222 2347899999999987666667889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcC---CcEEEEcCCCC
Q 023335 177 MFDLTS---RCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK---ATLFFSSATHN 249 (283)
Q Consensus 177 v~D~~~---~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~---~~~~e~Sa~~~ 249 (283)
|+|+++ +.+.+.+ ..+.. . ..+. |||+||+|+ .+++......+++.++.+..+ .+++++||++|
T Consensus 81 VVda~eg~~~qT~ehl----~il~~-l-gi~~iIVVlNKiDl---v~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG 151 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AILQL-T-GNPMLTVALTKADR---VDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEG 151 (614)
T ss_pred EEECCCCCcHHHHHHH----HHHHH-c-CCCeEEEEEECCcc---CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 999987 3343333 22222 2 2343 699999996 222222223556666666554 67999999999
Q ss_pred cCHHHHHHHHHHHHhC
Q 023335 250 INVNKIFKFIMAKLFN 265 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~ 265 (283)
+|++++++.|.+....
T Consensus 152 ~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 152 RGIDALREHLLQLPER 167 (614)
T ss_pred CCCHHHHHHHHHhhcc
Confidence 9999999999875533
No 217
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.66 E-value=1.8e-15 Score=128.45 Aligned_cols=169 Identities=19% Similarity=0.225 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcccccccccee--eeeEEEEEECCeEEEEEEEeCCCCCCccc-----chhhhcccCcE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGL--NLINKTLMVQGARIAFSIWDVGGDSRSFD-----HVPIACKDAVA 173 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----~~~~~~~~ad~ 173 (283)
||+++|..++||||+. -+..+-........+. +.....+... ..+.+++||+||+..+.. .....++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 8999999999999999 4444332222222222 2222222222 346799999999986543 35667899999
Q ss_pred EEEEEECCChhh---HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch----HHHHHHHHHHcC---CcEEE
Q 023335 174 ILFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAMK---ATLFF 243 (283)
Q Consensus 174 iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~----~~~~~~~~~~~~---~~~~e 243 (283)
+|+|+|+.+.+- +..+...+..+.+++++....+..+|+|+ ++++.+... .+.+.+.+...+ +.++.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~---l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDL---LSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCC---S-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeeccc---CCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999985543 34445677778888988888899999998 555544443 344555556666 77888
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccccccccC
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLT 275 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~ 275 (283)
||..+ +.+-+.|..+++.++.+....++.++
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP~~~~le~~L~ 187 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIPNLSTLENLLN 187 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTSTTHCCCCCCCC
T ss_pred ccCcC-cHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 99987 57999999999999988777776654
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.65 E-value=2.3e-15 Score=144.25 Aligned_cols=157 Identities=12% Similarity=0.139 Sum_probs=99.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEEE--ECCeEE----------EEEEEeCCCCCCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTLM--VQGARI----------AFSIWDVGGDSRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~~--~~~~~~----------~l~i~Dt~G~~~~ 160 (283)
+...|+++|..++|||||+ ++.+.......+ +.|..+...... ..+..+ .+.+|||||++.|
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f 84 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF 84 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence 4567999999999999999 997665442222 333333221110 011111 2689999999999
Q ss_pred ccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-----------cch
Q 023335 161 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-----------WTI 226 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-----------~~~ 226 (283)
..++...++.+|++++|+|+++ +++++.+..+ .. .+.|.++++||+|+......... ...
T Consensus 85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v 158 (586)
T PRK04004 85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRV 158 (586)
T ss_pred HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHH
Confidence 9888888899999999999997 5666655322 22 24566899999997311110000 000
Q ss_pred HH-------HHHHHHHHc---------------CCcEEEEcCCCCcCHHHHHHHHHH
Q 023335 227 AT-------QARAYAKAM---------------KATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 227 ~~-------~~~~~~~~~---------------~~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
.+ +...+.... .++++++||++|+|++++++.+..
T Consensus 159 ~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 159 QQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00 111111211 256899999999999999988764
No 219
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.62 E-value=5.2e-15 Score=127.02 Aligned_cols=111 Identities=14% Similarity=0.163 Sum_probs=78.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--------------ccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--------------RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--------------~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
+|+++|..|+|||||+ +++...-. +.. ...+..+......+.....++.+|||||+..|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4899999999999999 98753110 101 12233333334444445577899999999999888
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
...+++.+|++++|+|.++.... ....|+..+... +.|.++++||+|+.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~--~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL--NIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc--CCCEEEEEECcccc
Confidence 88899999999999999986543 334555555443 45668999999973
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.59 E-value=1.3e-14 Score=113.51 Aligned_cols=134 Identities=21% Similarity=0.269 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhcccCcEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIACKDAVAILF 176 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~~~ad~iil 176 (283)
||+++|..|+|||||+ ++.+.+. .+..|..+.+. + .++||||.-- |....-....+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-~~~KTq~i~~~-------~-----~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-RYKKTQAIEYY-------D-----NTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-CcCccceeEec-------c-----cEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 7999999999999999 7766443 33334333332 1 3479998432 11111123369999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l 255 (283)
+.|.+++.+.-. ..+.. ....|+|=|.||+|+ .. .....+.++++.+..|+ ..|++|+.+|+||++|
T Consensus 70 l~dat~~~~~~p-P~fa~-----~f~~pvIGVITK~Dl----~~--~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL 137 (143)
T PF10662_consen 70 LQDATEPRSVFP-PGFAS-----MFNKPVIGVITKIDL----PS--DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEEL 137 (143)
T ss_pred EecCCCCCccCC-chhhc-----ccCCCEEEEEECccC----cc--chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHH
Confidence 999998754211 01111 124577889999996 21 12335677788888888 5788999999999999
Q ss_pred HHHHH
Q 023335 256 FKFIM 260 (283)
Q Consensus 256 f~~l~ 260 (283)
.++|-
T Consensus 138 ~~~L~ 142 (143)
T PF10662_consen 138 KDYLE 142 (143)
T ss_pred HHHHh
Confidence 98874
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.8e-14 Score=136.05 Aligned_cols=155 Identities=15% Similarity=0.138 Sum_probs=119.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhc--c
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIAC--K 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~--~ 169 (283)
..+|+++|+||||||||. ++++.... .++|...++.....+...+.. +++.|.||.-... ...+.|+ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 567999999999999999 99998877 999988888877777777766 6779999965432 2344554 3
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 249 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 249 (283)
+.|++|-|.|.+|.+- +.+-.++-..-+.|.|++.|++|. .+++-+.-+..++.+..|++.+++||++|
T Consensus 81 ~~D~ivnVvDAtnLeR-----nLyltlQLlE~g~p~ilaLNm~D~------A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 81 KPDLIVNVVDATNLER-----NLYLTLQLLELGIPMILALNMIDE------AKKRGIRIDIEKLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred CCCEEEEEcccchHHH-----HHHHHHHHHHcCCCeEEEeccHhh------HHhcCCcccHHHHHHHhCCCEEEEEeecC
Confidence 6699999999998652 222222222235567899999995 44555677788899999999999999999
Q ss_pred cCHHHHHHHHHHHHhCCc
Q 023335 250 INVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~~ 267 (283)
.|++++.+.+.+....+.
T Consensus 150 ~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 150 EGLEELKRAIIELAESKT 167 (653)
T ss_pred CCHHHHHHHHHHhccccc
Confidence 999999999987665544
No 222
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.59 E-value=3.4e-14 Score=126.56 Aligned_cols=79 Identities=19% Similarity=0.237 Sum_probs=57.6
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEE---------------------ECC-eEEEEEEEeCCCC-
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLM---------------------VQG-ARIAFSIWDVGGD- 157 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~---------------------~~~-~~~~l~i~Dt~G~- 157 (283)
|.++|.+|||||||+ ++++..+. ..+|.+..+....... +++ ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999 99988866 5565333222222222 223 3478999999997
Q ss_pred ---CCcccchhhh---cccCcEEEEEEECC
Q 023335 158 ---SRSFDHVPIA---CKDAVAILFMFDLT 181 (283)
Q Consensus 158 ---~~~~~~~~~~---~~~ad~iilv~D~~ 181 (283)
+++..+...| +++||++++|+|++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5566666665 89999999999997
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=5.8e-15 Score=125.39 Aligned_cols=150 Identities=14% Similarity=0.087 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc---------------------------ccccc---cceeeeeEEEEEECCeEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ---------------------------ERSLQ---MAGLNLINKTLMVQGARIAFS 150 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~---------------------------~~~~~---t~~~~~~~~~~~~~~~~~~l~ 150 (283)
+|+++|..++|||||+ +++...- .+..+ ..|.........+......+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999 8853210 00000 112222222233333456789
Q ss_pred EEeCCCCCCcccchhhhcccCcEEEEEEECCChh-------hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC-CCCCc
Q 023335 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR-LPPDL 222 (283)
Q Consensus 151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-------s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~-l~~~~ 222 (283)
+|||+|+..|.......+..+|++|+|+|+++.. ..+....| .... .....++|+++||+|+... .....
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~ 158 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLAR-TLGVKQLIVAVNKMDDVTVNWSEER 158 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHH-HcCCCeEEEEEEccccccccccHHH
Confidence 9999998877655556678899999999998842 11122222 2222 2222445789999997210 00111
Q ss_pred ccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHH
Q 023335 223 QWTIATQARAYAKAMK-----ATLFFSSATHNINVN 253 (283)
Q Consensus 223 ~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~ 253 (283)
.....+++..+.+..+ ++++++||++|+|++
T Consensus 159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1122444554555554 568999999999987
No 224
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.58 E-value=3.8e-14 Score=118.16 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=96.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
.++|+++|..++|||||+ +++..... +..+ ..|.........+......+.+.||||...|...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 578999999999999999 98753100 0000 2233444444445445567889999999887766
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK--- 238 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~--- 238 (283)
....+..+|++++|+|++..-.-+ ....+..+... +.| .|++.||+|+ ..... .....+++.++.+..+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~~--~~~~iIvviNK~D~---~~~~~~~~~~~~~i~~~l~~~g~~~ 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQV--GVPYIVVFLNKADM---VDDEELLELVEMEVRELLSKYGFDG 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCcEEEEEeCCCC---CCcHHHHHHHHHHHHHHHHHhcccc
Confidence 677788999999999997643222 22333334332 234 4688999997 22221 1223456777766654
Q ss_pred --CcEEEEcCCCCcCHH
Q 023335 239 --ATLFFSSATHNINVN 253 (283)
Q Consensus 239 --~~~~e~Sa~~~~~v~ 253 (283)
++++.+||++|.|+.
T Consensus 156 ~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 156 DNTPIVRGSALKALEGD 172 (195)
T ss_pred cCCeEEEeeCccccCCC
Confidence 578999999999853
No 225
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.58 E-value=3.8e-14 Score=118.41 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=95.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-ccccccee-eee--EEEEEECCeEEEEEEEeCCCCCCcccchhhh-----cc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL-NLI--NKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CK 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~-~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~~ 169 (283)
++||+++|.+|||||||+ .+++..+. ....+++. ... ...+... ....+.+|||+|..........| +.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 479999999999999999 99886554 22223231 111 1111111 12358899999976543333333 57
Q ss_pred cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCC------cccchHHHHHHH----HHHcC
Q 023335 170 DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD------LQWTIATQARAY----AKAMK 238 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~------~~~~~~~~~~~~----~~~~~ 238 (283)
++|+++++.| .+|... ..|++.+... ..+.++|+||+|+...-... .+....++.++. ....+
T Consensus 80 ~~d~~l~v~~----~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 80 EYDFFIIISS----TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred CcCEEEEEeC----CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8899888843 224343 3566766664 35668999999972100000 011112222222 22222
Q ss_pred ---CcEEEEcCC--CCcCHHHHHHHHHHHHhCC
Q 023335 239 ---ATLFFSSAT--HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 239 ---~~~~e~Sa~--~~~~v~~lf~~l~~~i~~~ 266 (283)
.++|.+|+. .+.|+..+.+.++..+.+.
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 267889998 5789999999999888653
No 226
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.57 E-value=2.2e-14 Score=125.74 Aligned_cols=142 Identities=12% Similarity=0.208 Sum_probs=94.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-c----------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-----
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-R----------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----- 162 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~----------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----- 162 (283)
.++|+++|.+|+|||||+ ++++..+. . ..+|++.+.....+..+|..+.+.+|||+|-..+..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 689999999999999999 99988765 2 123555666666677788889999999999432211
Q ss_pred ---------------------chhhhcc--cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 163 ---------------------HVPIACK--DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 163 ---------------------~~~~~~~--~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
.....+. ++|+++++++.+.. .+... ...++.+. ...+.|+|+||+|+ +
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~---l 156 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADT---L 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCc---C
Confidence 1113333 45667777766542 12121 23333333 24566899999997 4
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
.........+.+++.++.+++.+|......
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 433333457778888999999998766543
No 227
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.57 E-value=2.9e-14 Score=121.31 Aligned_cols=153 Identities=11% Similarity=0.158 Sum_probs=93.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccc------------------------cceeeeeEEEEE-------------EC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQ------------------------MAGLNLINKTLM-------------VQ 143 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~------------------------t~~~~~~~~~~~-------------~~ 143 (283)
||+++|+.++|||||+ +|..+.|..... ..|.+...+.+. +.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999 999776642110 011111000000 11
Q ss_pred CeEEEEEEEeCCCCCCcccchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 144 GARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
.....+.+.||||+++|.......+. .+|++++|+|++....-. ...++..+... ..|+++|.||+|+ .+..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~---~~~~ 154 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDL---APAN 154 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccc---cCHH
Confidence 11346788999999988654444443 689999999987654322 23344444332 3466899999996 3322
Q ss_pred cccchHHHHHHHHHH--------------------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023335 222 LQWTIATQARAYAKA--------------------------MKATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~--------------------------~~~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
......+++.++.+. ..+++|.+||.+|+|++++...|.
T Consensus 155 ~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 155 ILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 222223334333331 123789999999999999887764
No 228
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.55 E-value=8.3e-14 Score=118.19 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=76.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cc----------c---ccceeeeeE--EEEEEC--------CeEEEEEEEeCC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RS----------L---QMAGLNLIN--KTLMVQ--------GARIAFSIWDVG 155 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~----------~---~t~~~~~~~--~~~~~~--------~~~~~l~i~Dt~ 155 (283)
+|+++|..++|||||+ +++...-. .. . ...|..... ..+.++ +..+.+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999 98743211 00 0 011222211 122333 447889999999
Q ss_pred CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|++.|......+++.+|++++|||+++..+.+....|. .... ...|+|+|+||+|+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~-~~~~--~~~p~ilviNKiD~ 137 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLR-QALK--ERVKPVLVINKIDR 137 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCCc
Confidence 99999999999999999999999999876665433322 2222 24567899999996
No 229
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.55 E-value=7.2e-14 Score=128.75 Aligned_cols=148 Identities=11% Similarity=0.093 Sum_probs=95.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc-------c-----cccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE-------Q-----ERSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~-------~-----~~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++++.. + .+.. ...|.......+.++.....+.+|||||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 345799999999999999999 997420 0 0000 01233343444555555667899999999988
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
..........+|++++|+|+++...-+. ...+..+... ..|++ ++.||+|+ .+.+. .....++++++++.++
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCEEEEEEEeccc---CCHHHHHHHHHHHHHHHHHhcC
Confidence 6555555678899999999987422222 2223333322 34554 68999997 22211 1122456777777775
Q ss_pred -----CcEEEEcCCCCc
Q 023335 239 -----ATLFFSSATHNI 250 (283)
Q Consensus 239 -----~~~~e~Sa~~~~ 250 (283)
++++++||.+|.
T Consensus 163 ~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPGDDTPIIRGSALKAL 179 (394)
T ss_pred CCccCccEEECcccccc
Confidence 689999999875
No 230
>PRK12735 elongation factor Tu; Reviewed
Probab=99.54 E-value=9.8e-14 Score=127.86 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=103.4
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcC-------ccc-----ccc---ccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGN-------EQE-----RSL---QMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~-------~~~-----~~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++++. .+. +.. ...|.........+......+.++||||+++|
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 345799999999999999999 99852 110 000 02244333334445444566889999999887
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
.......+..+|++++|+|+++...-+ ...++..+... ..|.+ ++.||+|+ ...+. .....+++..+.+.++
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~~--gi~~iivvvNK~Dl---~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHHc--CCCeEEEEEEecCC---cchHHHHHHHHHHHHHHHHHcC
Confidence 665556678999999999998743222 22333333322 34545 67999997 22111 1223456777777664
Q ss_pred -----CcEEEEcCCCCc----------CHHHHHHHHHHHH
Q 023335 239 -----ATLFFSSATHNI----------NVNKIFKFIMAKL 263 (283)
Q Consensus 239 -----~~~~e~Sa~~~~----------~v~~lf~~l~~~i 263 (283)
++++++||++|. ++.++++.|.+.+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 578999999984 5677777776654
No 231
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=2.1e-13 Score=118.57 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=108.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-----cccchh---hhcc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-----SFDHVP---IACK 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~---~~~~ 169 (283)
...|+|.|.||||||||+ ++.+.+.. .+||.|.-......+..++ ..+|+.||||.-. .+.+-. ..++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 457999999999999999 99999988 9999555444444444443 5688999999422 111111 1222
Q ss_pred -cCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335 170 -DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 170 -~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
=+++|+|+||.+..+ +.+.-..++++++.... .|.++|.||.|+ .. ....+++.......+. ....++
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~----~~---~e~~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI----AD---EEKLEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc----cc---hhHHHHHHHHHHhhcccccccee
Confidence 357899999998654 56776788999988765 677899999995 11 1112333333333343 467788
Q ss_pred CCCCcCHHHHHHHHHHHHhCCc
Q 023335 246 ATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+..+.+++.+-+.+.....+.-
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~~~ 339 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALEPL 339 (346)
T ss_pred eeehhhHHHHHHHHHHHhhchh
Confidence 8888888888877777765543
No 232
>PRK12736 elongation factor Tu; Reviewed
Probab=99.53 E-value=1.1e-13 Score=127.56 Aligned_cols=162 Identities=10% Similarity=0.093 Sum_probs=104.2
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc------------c--c-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE------------R--S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~--~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++++.... + . ....|.........+......+.++||||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 445799999999999999999 98752110 0 0 002233333344445445567789999999887
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCcc-cchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~~~~ 238 (283)
.......+..+|++++|+|+++...-+. ..++..+... ..| .|++.||+|+ ...+.. ....+++.++.+..+
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~--g~~~~IvviNK~D~---~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV--GVPYLVVFLNKVDL---VDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCEEEEEEEecCC---cchHHHHHHHHHHHHHHHHHhC
Confidence 6555555678999999999986422121 2233333332 345 3688999997 221111 122456677766665
Q ss_pred -----CcEEEEcCCCCc--------CHHHHHHHHHHHHh
Q 023335 239 -----ATLFFSSATHNI--------NVNKIFKFIMAKLF 264 (283)
Q Consensus 239 -----~~~~e~Sa~~~~--------~v~~lf~~l~~~i~ 264 (283)
++++.+||++|. ++.++++.+.+.+.
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 478999999983 57788877776654
No 233
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.51 E-value=1.3e-14 Score=111.41 Aligned_cols=111 Identities=15% Similarity=0.092 Sum_probs=79.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcccc-cc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQER-SL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+||+++|+.|||||+|+ ++....+.. +. +|.+ +..+...+++.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 58999999999999999 998777762 22 3332 333445567889999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|+.++.++++.+ |...+...++..++ ++++||.|+. ... .++++.+..++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~----~~~---------~~~~~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLE----EER---------QVATEEGLEFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhH----hhC---------cCCHHHHHHHHHHhCCCcchhh
Confidence 999999999876 88887766544444 6899999951 111 1222223346678899999884
No 234
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=5.8e-13 Score=122.10 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEE---------------------C-CeEEEEEEEeCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMV---------------------Q-GARIAFSIWDVGG 156 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~---------------------~-~~~~~l~i~Dt~G 156 (283)
+||.++|.||||||||+ ++++..+. ..++.++.+.....+.+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999 99988776 56663333222222221 1 1236789999999
Q ss_pred C----CCcccchhhh---cccCcEEEEEEECC
Q 023335 157 D----SRSFDHVPIA---CKDAVAILFMFDLT 181 (283)
Q Consensus 157 ~----~~~~~~~~~~---~~~ad~iilv~D~~ 181 (283)
. +.+..+...| ++++|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 4 4455566666 78999999999997
No 235
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.48 E-value=2.9e-13 Score=126.21 Aligned_cols=154 Identities=14% Similarity=0.122 Sum_probs=101.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcc--c-------------------------cccc---cceeeeeEEEEEECCeE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ--E-------------------------RSLQ---MAGLNLINKTLMVQGAR 146 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~--~-------------------------~~~~---t~~~~~~~~~~~~~~~~ 146 (283)
...++|+++|..++|||||+ +++...- . +..+ ..|.........+....
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 45789999999999999999 8864210 0 0000 11333333344455556
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHH-------HHHHHHHHHHhHCCCCce-EEEeecCCCCC-C
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLN-------SIVGWYSEARKWNQTAIP-ILIGTKFDDFV-R 217 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~-------~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~-~ 217 (283)
..+.+.|+||+++|.......+..+|++|+|+|+++ .+|+ ...+.+..+.. ...++ |+++||+|+.. .
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~--~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT--LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH--cCCCcEEEEEEcccCCchh
Confidence 788999999999998888888999999999999987 3333 22222222222 23444 67899999620 0
Q ss_pred CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335 218 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 254 (283)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 254 (283)
.....-..+.++++.++++.| ++++++||++|+|+.+
T Consensus 162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 001112234677888888776 5689999999999854
No 236
>PRK13351 elongation factor G; Reviewed
Probab=99.48 E-value=2.1e-13 Score=134.09 Aligned_cols=114 Identities=13% Similarity=0.168 Sum_probs=79.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcc-------------c-cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-------------E-RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-------------~-~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
...+|+|+|..++|||||+ +++...- . +..+ ..+.........+......+++|||||+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3579999999999999999 9974210 0 0000 1122222222223334577899999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
......+++.+|++++|+|.++..+.+....| ..+... +.|+++++||+|+.
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~~--~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADRY--GIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHhc--CCCEEEEEECCCCC
Confidence 88889999999999999999988776665555 333332 45668999999974
No 237
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.48 E-value=6.8e-13 Score=115.84 Aligned_cols=111 Identities=11% Similarity=0.115 Sum_probs=76.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcc--c---------------cccc----cceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQ--E---------------RSLQ----MAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~--~---------------~~~~----t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
-+|+++|.+|+|||||+ +++...- . ..+. ..+.++......++...+.+++|||+|+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 46999999999999999 8874210 0 0000 11334444445555566889999999999
Q ss_pred CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
+|......+++.+|++|+|+|.++.... ....++..... .+.|.++++||+|+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~~--~~~P~iivvNK~D~ 135 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCRL--RGIPIITFINKLDR 135 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHHh--cCCCEEEEEECCcc
Confidence 8887777788999999999999875332 22344444333 24566899999996
No 238
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.48 E-value=7.9e-13 Score=108.12 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=101.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcc-ccccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-ERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~ 166 (283)
...-|+++|.+|||||||| .+++.+- .....|.|.+.....+.+++. +.+.|.|| .+.+..+...
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3567999999999999999 9999663 333445565555555566554 67889998 2334455666
Q ss_pred hcc---cCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC---
Q 023335 167 ACK---DAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--- 238 (283)
Q Consensus 167 ~~~---~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--- 238 (283)
|++ +-.++++++|+...-.-. .+.+|+.+. +.|++||+||+|. ++.... .......++..+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~-----~i~~~vv~tK~DK---i~~~~~---~k~l~~v~~~l~~~~ 168 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL-----GIPVIVVLTKADK---LKKSER---NKQLNKVAEELKKPP 168 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc-----CCCeEEEEEcccc---CChhHH---HHHHHHHHHHhcCCC
Confidence 664 345888999987654332 234565553 5566899999996 332211 222333333332
Q ss_pred -Cc--EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 239 -AT--LFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 239 -~~--~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.. ++..|+.++.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 6679999999999999998887644
No 239
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.47 E-value=1.2e-12 Score=113.46 Aligned_cols=150 Identities=18% Similarity=0.185 Sum_probs=107.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----c---cchhhhcccC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----F---DHVPIACKDA 171 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~---~~~~~~~~~a 171 (283)
..|+++|.|+||||||+ ++.+.+.. ..|+.+........+.++| .++|+.|+||.-.. + ...-...++|
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 57999999999999999 99998887 8899777777777787777 45788999974332 2 1223456899
Q ss_pred cEEEEEEECCChhh-HHHHHHHHHH--------------------------------------------HHhHCC-----
Q 023335 172 VAILFMFDLTSRCT-LNSIVGWYSE--------------------------------------------ARKWNQ----- 201 (283)
Q Consensus 172 d~iilv~D~~~~~s-~~~~~~~~~~--------------------------------------------i~~~~~----- 201 (283)
|++++|.|+....+ .+.+.+.++. .+-++.
T Consensus 142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir 221 (365)
T COG1163 142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR 221 (365)
T ss_pred CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence 99999999986554 3333222221 110000
Q ss_pred -----------------CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 202 -----------------TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 202 -----------------~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
-.|-+.|.||.|+ .. .++...+.+.. .++.+||+.+.|++++.+.|.+.+-
T Consensus 222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~---~~-------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 222 EDVTLDDLIDALEGNRVYKPALYVVNKIDL---PG-------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred cCCcHHHHHHHHhhcceeeeeEEEEecccc---cC-------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0244899999996 11 34555555554 7899999999999999999998773
No 240
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.47 E-value=2.5e-13 Score=125.57 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--c---------------------------ccc---cceeeeeEEEEEECCeEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--R---------------------------SLQ---MAGLNLINKTLMVQGARI 147 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~---------------------------~~~---t~~~~~~~~~~~~~~~~~ 147 (283)
++|+++|..++|||||+ +++...-. . ..+ ..|.........+.....
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999 88633211 0 000 112222222333333445
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 227 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~ 227 (283)
.+.|+||||+++|.......+..+|++++|+|++....-+....| ..+... ...+.|++.||+|+... +.+......
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~-~~~~~~-~~~~iivviNK~D~~~~-~~~~~~~i~ 157 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHS-YIASLL-GIRHVVLAVNKMDLVDY-DEEVFENIK 157 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHH-HHHHHc-CCCcEEEEEEecccccc-hHHHHHHHH
Confidence 788999999998866555678899999999998764322211112 122221 22345789999997210 011111123
Q ss_pred HHHHHHHHHcC---CcEEEEcCCCCcCHHH
Q 023335 228 TQARAYAKAMK---ATLFFSSATHNINVNK 254 (283)
Q Consensus 228 ~~~~~~~~~~~---~~~~e~Sa~~~~~v~~ 254 (283)
++...+.+..+ ++++++||++|+|+++
T Consensus 158 ~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 158 KDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 44555555554 4689999999999886
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=2.9e-13 Score=127.12 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=92.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cc-----------ccc-------------------ceeeeeEEEEEECC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RS-----------LQM-------------------AGLNLINKTLMVQG 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~-----------~~t-------------------~~~~~~~~~~~~~~ 144 (283)
...++|+++|..++|||||+ +++...-. .. .-+ .|+........+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44699999999999999999 98643211 00 000 12222222223334
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCccc
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 224 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~ 224 (283)
....+.|+||||++.|.......+..+|++++|+|++..-.-+....| ..+.... ..+.|++.||+|+... ......
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~-~l~~~lg-~~~iIvvvNKiD~~~~-~~~~~~ 181 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS-FIATLLG-IKHLVVAVNKMDLVDY-SEEVFE 181 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH-HHHHHhC-CCceEEEEEeeccccc-hhHHHH
Confidence 456788999999988765445557999999999999764221111111 1122212 2345789999997210 011011
Q ss_pred chHHHHHHHHHHcC----CcEEEEcCCCCcCHHHH
Q 023335 225 TIATQARAYAKAMK----ATLFFSSATHNINVNKI 255 (283)
Q Consensus 225 ~~~~~~~~~~~~~~----~~~~e~Sa~~~~~v~~l 255 (283)
...++...+.+..+ .+++.+||++|+|++++
T Consensus 182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 12344445455443 67899999999999865
No 242
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.6e-12 Score=119.27 Aligned_cols=161 Identities=16% Similarity=0.194 Sum_probs=118.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcc-----------ccccc---cceeeeeEEEEE---ECCeEEEEEEEeCCCCCCcc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQ-----------ERSLQ---MAGLNLINKTLM---VQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~-----------~~~~~---t~~~~~~~~~~~---~~~~~~~l~i~Dt~G~~~~~ 161 (283)
--++.||-.---|||||. +++.-.- .+... ..|++...++.. .+|+.+.++++||||+-.|.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 457888999999999999 8863211 01111 224444433322 24677999999999999999
Q ss_pred cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
......+.-|+++|||+|++..-.-+.+..++..+.. +-.+|.|.||+|+ +....+.+..++.++......+.
T Consensus 140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDl----p~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDL----PSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCC----CCCCHHHHHHHHHHHhcCCccce
Confidence 9999999999999999999987555555555555543 4567899999995 55555555666666666666688
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 242 FFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+.+|||+|.|++++|+.|++.+....
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~ 238 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPK 238 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCC
Confidence 99999999999999999999986543
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.44 E-value=1.8e-12 Score=122.93 Aligned_cols=114 Identities=11% Similarity=0.106 Sum_probs=78.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc--Cccc--cc--------------c---ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE--RS--------------L---QMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~~--------------~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
...+|+|+|..++|||||+ +++. +... .. . ...|..+......++...+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 4579999999999999999 8863 1110 00 0 0124444444444444567789999999
Q ss_pred CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
+..|......+++.+|++|+|+|+++...- ....++..... .+.|+++++||+|+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~~--~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCRL--RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHHh--cCCCEEEEEECCccc
Confidence 999888777889999999999999875322 22344444433 245668999999973
No 244
>COG2262 HflX GTPases [General function prediction only]
Probab=99.44 E-value=4.4e-12 Score=113.53 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=108.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccchhh------hcc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHVPI------ACK 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~~------~~~ 169 (283)
-..|.++|-.|+|||||+ .+++...- .+.-....+...+.+.+.+ ...+.+-||.|--+. ..+... -..
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~ 270 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVK 270 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHhh
Confidence 467999999999999999 88876544 4444556666777777764 334667899984321 112222 236
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
.||+++.|+|+++++..+.+..-.+-+....- +.|.|+|.||+|+ +.+.. ....+..... ..+.+||++
T Consensus 271 ~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~---~~~~~------~~~~~~~~~~-~~v~iSA~~ 340 (411)
T COG2262 271 EADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL---LEDEE------ILAELERGSP-NPVFISAKT 340 (411)
T ss_pred cCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc---cCchh------hhhhhhhcCC-CeEEEEecc
Confidence 89999999999999877777655555555533 3455899999996 33221 1122222222 588999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023335 249 NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~ 267 (283)
|.|++.+++.|...+....
T Consensus 341 ~~gl~~L~~~i~~~l~~~~ 359 (411)
T COG2262 341 GEGLDLLRERIIELLSGLR 359 (411)
T ss_pred CcCHHHHHHHHHHHhhhcc
Confidence 9999999999999887543
No 245
>CHL00071 tufA elongation factor Tu
Probab=99.44 E-value=1.7e-12 Score=120.21 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=95.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc---------------cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE---------------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++++..-. ......|.........+......+.+.||||+..|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 345799999999999999999 99864110 00001233333333344444556788999998877
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
.......+..+|++++|+|+...-.- .....+..+... ..| .|++.||+|+ .+.+. .....+++..+.+..+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~~--g~~~iIvvvNK~D~---~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMP-QTKEHILLAKQV--GVPNIVVFLNKEDQ---VDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEEccCC---CCHHHHHHHHHHHHHHHHHHhC
Confidence 66666677899999999999864321 222333333322 335 4688999997 22111 1122456677766654
Q ss_pred -----CcEEEEcCCCCcCH
Q 023335 239 -----ATLFFSSATHNINV 252 (283)
Q Consensus 239 -----~~~~e~Sa~~~~~v 252 (283)
++++.+||.+|.|+
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEA 181 (409)
T ss_pred CCCCcceEEEcchhhcccc
Confidence 57889999998743
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.43 E-value=1.8e-12 Score=123.06 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=79.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc--Cccc--c--------------cc---ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE--R--------------SL---QMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~--------------~~---~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
...+|+|+|.+++|||||+ +++. +... . .. ...|.++......++...+.+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4679999999999999999 8752 1111 0 00 1224455555555666678899999999
Q ss_pred CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
+..|......+++.+|++|+|+|.++.-. .....+++..+. .+.|.++++||+|+
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~ 144 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDR 144 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccc
Confidence 99888777778999999999999987421 223344444333 24566899999996
No 247
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=3e-13 Score=106.20 Aligned_cols=159 Identities=15% Similarity=0.159 Sum_probs=111.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
+.-|++++|-.|+|||||+ .+.+++.....||.-.. +..+.+.+ +++..+|.+|+..-+..+..|+..+|++++.
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT--SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT--SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC--hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 3569999999999999999 88887776666654332 22444544 5688899999998888999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-----------CcEEEE
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-----------ATLFFS 244 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~e~ 244 (283)
+|+.|.+-|.+.+.-++.+.... ...|+++.|||+|......+++-+. .-.+..++...+ +..|.|
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~-~l~l~~~t~~~~~v~~~~~~~rp~evfmc 173 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRF-HLGLSNFTTGKGKVNLTDSNVRPLEVFMC 173 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHH-HHHHHHHhcccccccccCCCCCeEEEEEE
Confidence 99999999998887777665543 3567789999999633221111000 111122222111 235678
Q ss_pred cCCCCcCHHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMAK 262 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~ 262 (283)
|...+.+.-+.|.|+...
T Consensus 174 si~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 174 SIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEccCccceeeeehhhh
Confidence 888888878888887654
No 248
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.42 E-value=2.8e-13 Score=110.50 Aligned_cols=114 Identities=18% Similarity=0.247 Sum_probs=68.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhh---hcccCcEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPI---ACKDAVAIL 175 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~---~~~~ad~ii 175 (283)
--|+++|++|+|||+|. ++..+...........+. .+.+ +...-.+.+.|+||+++.+..... +...+.+||
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 46899999999999999 999986654333221111 1112 123345788999999998764433 478999999
Q ss_pred EEEECCC-hhhHHHHHHHHHHHHhH---CCCCce-EEEeecCCCCCC
Q 023335 176 FMFDLTS-RCTLNSIVGWYSEARKW---NQTAIP-ILIGTKFDDFVR 217 (283)
Q Consensus 176 lv~D~~~-~~s~~~~~~~~~~i~~~---~~~~~~-ilvgnK~DL~~~ 217 (283)
||+|.+. ...+.++.+++..+... ..+.+| +|++||.|+...
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 9999974 34455554444444332 245566 588999998543
No 249
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.42 E-value=2.9e-12 Score=119.18 Aligned_cols=178 Identities=19% Similarity=0.352 Sum_probs=124.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccC----c
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDA----V 172 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----d 172 (283)
.-.|+|+|+.++|||||| +|.+.+ +..++.+.+|....+.-+ +....+.+|-..|...+..+....+... -
T Consensus 25 ~k~vlvlG~~~~GKttli~~L~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 25 EKSVLVLGDKGSGKTTLIARLQGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred CceEEEEeCCCCchHHHHHHhhccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 457999999999999999 986543 344566776654443322 2245789999998777777766555422 3
Q ss_pred EEEEEEECCChhhH-HHHHHHHHHHHhHC------------------------------C-----------------C--
Q 023335 173 AILFMFDLTSRCTL-NSIVGWYSEARKWN------------------------------Q-----------------T-- 202 (283)
Q Consensus 173 ~iilv~D~~~~~s~-~~~~~~~~~i~~~~------------------------------~-----------------~-- 202 (283)
++|+|.|++.+..+ +.+..|+..++.+. . +
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 88999999998654 45566654332210 0 0
Q ss_pred --------------CceEEEeecCCCCCCCCCCc------ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 203 --------------AIPILIGTKFDDFVRLPPDL------QWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 203 --------------~~~ilvgnK~DL~~~l~~~~------~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
.|++||++|+|....+..+. -..+.+-++.+|-.+|+.+|++|++...|++-++++|.+.
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~ 262 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHR 262 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHH
Confidence 13469999999643332221 1234677899999999999999999999999999999999
Q ss_pred HhCCccccccccCCCCC
Q 023335 263 LFNLPWTVKRNLTIGEP 279 (283)
Q Consensus 263 i~~~~~~~~~~~~~~~~ 279 (283)
++..+.....+....+.
T Consensus 263 l~~~~f~~~~~vv~~d~ 279 (472)
T PF05783_consen 263 LYGFPFKTPAQVVERDA 279 (472)
T ss_pred hccCCCCCCceeecccc
Confidence 99988776555544443
No 250
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.40 E-value=2.5e-12 Score=112.55 Aligned_cols=144 Identities=15% Similarity=0.126 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc-c---cc-c--------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE-R---SL-Q--------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~-~---~~-~--------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 161 (283)
+|+++|.+|+|||||+ +++..... . .. . ..........+.++ .+.+.+|||+|...|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--GHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--CEEEEEEECcCHHHHH
Confidence 4899999999999999 88643211 0 00 0 01111122233333 4668899999998887
Q ss_pred cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
.....+++.+|++++|+|.++.........|. .+.. .+.|.++++||+|+. .. ...+....+...++..+
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~----~~---~~~~~~~~l~~~~~~~~ 148 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRE----RA---DFDKTLAALQEAFGRPV 148 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccC----CC---CHHHHHHHHHHHhCCCe
Confidence 77788899999999999999876554433332 3332 245668999999962 11 12334444555556554
Q ss_pred EE--EcCCCCcCHHHHHH
Q 023335 242 FF--SSATHNINVNKIFK 257 (283)
Q Consensus 242 ~e--~Sa~~~~~v~~lf~ 257 (283)
+. +...++.++..+.+
T Consensus 149 ~~~~ip~~~~~~~~~~vd 166 (268)
T cd04170 149 VPLQLPIGEGDDFKGVVD 166 (268)
T ss_pred EEEEecccCCCceeEEEE
Confidence 43 45566555544433
No 251
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.40 E-value=3.8e-12 Score=110.26 Aligned_cols=170 Identities=21% Similarity=0.334 Sum_probs=119.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEE--CCeEEEEEEEeCCCCCCcccchhhhcccC----cE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFDHVPIACKDA----VA 173 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a----d~ 173 (283)
-.|+|+|+.++|||||| ++-+.+ ...+..|..|..-.+.- .+...++.+|-.-|+-....+....+... -.
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl 130 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL 130 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence 47999999999999999 987766 33344555554333322 22346788898888776666665555332 37
Q ss_pred EEEEEECCChh-hHHHHHHHHHHHHhHCC---------------------------------------------------
Q 023335 174 ILFMFDLTSRC-TLNSIVGWYSEARKWNQ--------------------------------------------------- 201 (283)
Q Consensus 174 iilv~D~~~~~-s~~~~~~~~~~i~~~~~--------------------------------------------------- 201 (283)
+||+.|++++. -++.+++|..-++++..
T Consensus 131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll 210 (473)
T KOG3905|consen 131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL 210 (473)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence 89999999994 46777888665443210
Q ss_pred -----------CCceEEEeecCCCCCCCCC------CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 202 -----------TAIPILIGTKFDDFVRLPP------DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 202 -----------~~~~ilvgnK~DL~~~l~~------~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
..+++||.+|||....+.. +.-..+...+++||-.+|...+++|+|...|++-++++|+++++
T Consensus 211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence 0234689999996322221 11223467789999999999999999999999999999999998
Q ss_pred CCcccccc
Q 023335 265 NLPWTVKR 272 (283)
Q Consensus 265 ~~~~~~~~ 272 (283)
..+.....
T Consensus 291 G~~fttpA 298 (473)
T KOG3905|consen 291 GFPFTTPA 298 (473)
T ss_pred CcccCCcc
Confidence 87755443
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=2.1e-12 Score=121.10 Aligned_cols=149 Identities=10% Similarity=0.091 Sum_probs=96.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc------ccc---------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE------QER---------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~------~~~---------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ +++... ... .....|.........++.....+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 455799999999999999999 998521 110 0112233333333334334557789999999998
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM- 237 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~- 237 (283)
.......+..+|++++|+|+++...-+. .+++..+... ..+ .|++.||+|+ .+.+. .....+++..+.+..
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~--gi~~iIvvvNK~Dl---~~~~~~~~~i~~~i~~~l~~~g 231 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV--GVPNMVVFLNKQDQ---VDDEELLELVELEVRELLSSYE 231 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCeEEEEEecccc---cCHHHHHHHHHHHHHHHHHhcC
Confidence 7666666789999999999886533222 3344444332 334 4688999997 22111 122345677777665
Q ss_pred ----CCcEEEEcCCCCcC
Q 023335 238 ----KATLFFSSATHNIN 251 (283)
Q Consensus 238 ----~~~~~e~Sa~~~~~ 251 (283)
+++++.+||.+|.|
T Consensus 232 ~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 232 FPGDDIPIISGSALLALE 249 (478)
T ss_pred CCcCcceEEEEEcccccc
Confidence 35788899998854
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.40 E-value=1.7e-12 Score=126.45 Aligned_cols=153 Identities=15% Similarity=0.097 Sum_probs=91.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-c-c----------cc-c-------------------ceeeeeEEEEEECCe
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-R-S----------LQ-M-------------------AGLNLINKTLMVQGA 145 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~-~----------~~-t-------------------~~~~~~~~~~~~~~~ 145 (283)
..++|+++|.+++|||||+ +++...-. . . .. + .|.........+...
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 3579999999999999999 98753211 0 0 00 1 111111222223333
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
...+.|+||||++.|.......+..+|++++|+|++....-+. ...+..+... ...++||+.||+|+... +.+....
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~~~~iivvvNK~D~~~~-~~~~~~~ 179 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-GIRHVVLAVNKMDLVDY-DQEVFDE 179 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-CCCeEEEEEEecccccc-hhHHHHH
Confidence 4567899999998876545556789999999999976432111 1112222222 22345789999997210 0111111
Q ss_pred hHHHHHHHHHHcCC---cEEEEcCCCCcCHHH
Q 023335 226 IATQARAYAKAMKA---TLFFSSATHNINVNK 254 (283)
Q Consensus 226 ~~~~~~~~~~~~~~---~~~e~Sa~~~~~v~~ 254 (283)
...++.++.+.++. +++.+||++|.|+++
T Consensus 180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 23455555566654 589999999999874
No 254
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.39 E-value=8.7e-12 Score=95.04 Aligned_cols=104 Identities=13% Similarity=0.206 Sum_probs=68.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---------chhhhcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIACK 169 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~~~ 169 (283)
+|+|+|.+|+|||||+ .+++.... ...+..........+.+++..+ .++||||-..-.. .....+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 6899999999999999 99986443 4444332333335556677664 5899999654211 1222347
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeec
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTK 211 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK 211 (283)
.+|++++|+|.++... +....++++++ ...|.++|.||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence 9999999999877322 22334444442 45666899998
No 255
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=3.1e-12 Score=110.39 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335 158 SRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA 236 (283)
Q Consensus 158 ~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~ 236 (283)
++|..+.+.+++++|++++|||++++. ||+.+.+|+..+.. .+.+++||+||+|| .+ . .....+.+..+ +.
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL---~~-~-~~~~~~~~~~~-~~ 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDL---LD-D-EDMEKEQLDIY-RN 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECccc---CC-C-HHHHHHHHHHH-HH
Confidence 678888999999999999999999887 89999999987654 45677999999997 21 1 22223444444 45
Q ss_pred cCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335 237 MKATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 237 ~~~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
++++++++||++|.|++++|+.+..
T Consensus 96 ~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 96 IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CCCeEEEEecCCchhHHHHHhhhcC
Confidence 7889999999999999999998763
No 256
>PRK00049 elongation factor Tu; Reviewed
Probab=99.38 E-value=7.6e-12 Score=115.32 Aligned_cols=160 Identities=9% Similarity=0.090 Sum_probs=100.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++++.... +..+ ..|.........+......+.+.||||+.+|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 345799999999999999999 99863110 0000 2233333334445444556788999999887
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE-EEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i-lvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
.......+..+|++++|+|+++...- ....++..+... ..|.+ ++.||+|+ .+.+. .....+++.++....+
T Consensus 89 ~~~~~~~~~~aD~~llVVDa~~g~~~-qt~~~~~~~~~~--g~p~iiVvvNK~D~---~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 89 VKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFLNKCDM---VDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCch-HHHHHHHHHHHc--CCCEEEEEEeecCC---cchHHHHHHHHHHHHHHHHhcC
Confidence 66666667899999999999864322 223334444332 33544 67999997 22111 1122445666665543
Q ss_pred -----CcEEEEcCCCCc----------CHHHHHHHHHHH
Q 023335 239 -----ATLFFSSATHNI----------NVNKIFKFIMAK 262 (283)
Q Consensus 239 -----~~~~e~Sa~~~~----------~v~~lf~~l~~~ 262 (283)
++++.+||++|. ++..+++.|.+.
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 578999999875 455666666554
No 257
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=4.5e-12 Score=115.32 Aligned_cols=161 Identities=17% Similarity=0.182 Sum_probs=106.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-cc--------chhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-FD--------HVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-~~--------~~~~ 166 (283)
..++|+|+|.||||||||+ .+.+.... .+.+.+.-|.....+.++|.+ +.+.||+|-.+- .+ ....
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence 3589999999999999999 99988876 777755556566677777755 566899996551 11 1234
Q ss_pred hcccCcEEEEEEEC--CChhhHHHHHHHHHHHHhHC-------CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc
Q 023335 167 ACKDAVAILFMFDL--TSRCTLNSIVGWYSEARKWN-------QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 237 (283)
Q Consensus 167 ~~~~ad~iilv~D~--~~~~s~~~~~~~~~~i~~~~-------~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~ 237 (283)
.++.||++++|+|+ ++-++-..+.+.++...... .+.+.|++.||.|+....+...... ..+....
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~-----~~~~~~~ 419 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIP-----VVYPSAE 419 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCc-----eeccccc
Confidence 56899999999999 44444344444454443221 2356689999999843322211100 0111111
Q ss_pred ---CCc-EEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 238 ---KAT-LFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 238 ---~~~-~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
..+ ..++|+++++|++.+...+.+.+...
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 123 45699999999999999988876443
No 258
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.36 E-value=7.9e-12 Score=116.63 Aligned_cols=155 Identities=14% Similarity=0.128 Sum_probs=97.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCc--cc-------------------------cccc---cceeeeeEEEEEECCeE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNE--QE-------------------------RSLQ---MAGLNLINKTLMVQGAR 146 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~-------------------------~~~~---t~~~~~~~~~~~~~~~~ 146 (283)
...++|+++|..++|||||+ +++..- .. +..+ ..|.........+....
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 45789999999999999999 886511 00 0000 11333333333444556
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hH---HHHHHHHHHHHhHCCCCce-EEEeecCCCCC-CC
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL---NSIVGWYSEARKWNQTAIP-ILIGTKFDDFV-RL 218 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~-~l 218 (283)
..+.|+||||+++|.......+..+|++++|+|.++.. .| ....+.+..+... ..+. |++.||+|+.. ..
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence 77899999999998777777788999999999998642 11 1112222222221 3343 68999999411 01
Q ss_pred CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335 219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 254 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 254 (283)
+++.-..+.+++..+.+..+ ++++.+|+.+|+|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11222333566666666554 4688999999999864
No 259
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.35 E-value=7.8e-12 Score=109.30 Aligned_cols=110 Identities=14% Similarity=0.143 Sum_probs=72.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc--c------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ--E------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~--~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
+|+++|.+|+|||||+ +++...- . +..+ ..|.........+.....++.+|||||...|...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 4899999999999999 8863110 0 0000 1133322222222223467889999999888888
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
...+++.+|++|+|+|.++...-+. ..++..+... +.|.+++.||+|+
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~~--~~p~ivviNK~D~ 128 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADRY--NVPRIAFVNKMDR 128 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHHc--CCCEEEEEECCCC
Confidence 8889999999999999987532222 2333444332 3566899999996
No 260
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-11 Score=113.70 Aligned_cols=153 Identities=9% Similarity=0.062 Sum_probs=101.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..=|+++|.---|||||+ .+-+.......+ ...-......+.++ +..-.+.|.||||++.|..|+..-..-+|++||
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL 84 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL 84 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence 345889999999999999 887666552222 22222222334443 123457889999999999999998899999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhH-CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHcC--CcEEEEcCC
Q 023335 177 MFDLTSR---CTLNSIVGWYSEARKW-NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAMK--ATLFFSSAT 247 (283)
Q Consensus 177 v~D~~~~---~s~~~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~~--~~~~e~Sa~ 247 (283)
|+|++|. ++.+. +... ..+.|.|++.||+|.. +........+..++ ++.++ ..++.+||+
T Consensus 85 VVa~dDGv~pQTiEA-------I~hak~a~vP~iVAiNKiDk~----~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 85 VVAADDGVMPQTIEA-------INHAKAAGVPIVVAINKIDKP----EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred EEEccCCcchhHHHH-------HHHHHHCCCCEEEEEecccCC----CCCHHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 9999874 44333 2222 2255668999999962 22222222222221 22222 457889999
Q ss_pred CCcCHHHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMAKL 263 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i 263 (283)
+|+|+++|++.+.-..
T Consensus 154 tg~Gi~eLL~~ill~a 169 (509)
T COG0532 154 TGEGIDELLELILLLA 169 (509)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999877543
No 261
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1e-11 Score=112.43 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=111.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cc----------c---ccceeeeeEEEEE--E---CCeEEEEEEEeCCCCCCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RS----------L---QMAGLNLINKTLM--V---QGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~----------~---~t~~~~~~~~~~~--~---~~~~~~l~i~Dt~G~~~~ 160 (283)
-+..++-.-.-|||||. |++...-. +. . ...|++.....+. + +|+.+.++++||||+-.|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 35677888889999999 98643211 00 0 0124444333332 2 568899999999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA- 239 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~- 239 (283)
.......+..|.+.+||+|++..-.-+.+.+.|..+.. +--+|-|.||+|| |......+.++++. -.|+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDL----P~Adpervk~eIe~---~iGid 159 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDL----PAADPERVKQEIED---IIGID 159 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccC----CCCCHHHHHHHHHH---HhCCC
Confidence 88888889999999999999987655666666666653 3345789999995 44433333444443 4555
Q ss_pred --cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 240 --TLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 240 --~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
..+.+|||+|.||+++++.|++.+....
T Consensus 160 ~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~ 189 (603)
T COG0481 160 ASDAVLVSAKTGIGIEDVLEAIVEKIPPPK 189 (603)
T ss_pred cchheeEecccCCCHHHHHHHHHhhCCCCC
Confidence 4678999999999999999999986544
No 262
>PLN03127 Elongation factor Tu; Provisional
Probab=99.33 E-value=3.6e-11 Score=112.13 Aligned_cols=161 Identities=11% Similarity=0.112 Sum_probs=97.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcC------ccc------cc---cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGN------EQE------RS---LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~------~~~------~~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....++|+++|..++|||||+ ++.+. ... +. ....|.........++....++.+.||||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 455799999999999999999 98622 110 00 001233333344455555567889999999887
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCc-ccchHHHHHHHHHHc-
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARAYAKAM- 237 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~- 237 (283)
.......+..+|++++|+|.++...-+. ...+..+... ..+. |++.||+|+ .+.+. .....+++.++....
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~~--gip~iIvviNKiDl---v~~~~~~~~i~~~i~~~l~~~~ 211 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQV--GVPSLVVFLNKVDV---VDDEELLELVEMELRELLSFYK 211 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc--CCCeEEEEEEeecc---CCHHHHHHHHHHHHHHHHHHhC
Confidence 6555555678999999999876432221 2233333322 3453 678999997 22111 111233444555443
Q ss_pred ----CCcEEEEcCC---CCcC-------HHHHHHHHHHHH
Q 023335 238 ----KATLFFSSAT---HNIN-------VNKIFKFIMAKL 263 (283)
Q Consensus 238 ----~~~~~e~Sa~---~~~~-------v~~lf~~l~~~i 263 (283)
.++++.+||. +|.| +.++++.+.+.+
T Consensus 212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2567788775 5555 667777776654
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=1.1e-11 Score=101.57 Aligned_cols=156 Identities=18% Similarity=0.226 Sum_probs=96.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc---cCcEEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK---DAVAILFM 177 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---~ad~iilv 177 (283)
.|+++|..++|||+|. ++..+.+...++....+ ...+.+.... ..+.|.||+.+.+.-...+++ .+-+++||
T Consensus 40 ~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn--~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV 115 (238)
T KOG0090|consen 40 AVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPN--EATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV 115 (238)
T ss_pred cEEEEecCCCCceeeeeehhcCCccCeeeeeccc--eeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence 5899999999999999 99988655443332222 2233343333 678999999987766666666 78999999
Q ss_pred EECCC-hhhHHHHHHH-HHHHHhH--CCCCceE-EEeecCCCCCCCCCCcccc-hHHHHHHHHH----------------
Q 023335 178 FDLTS-RCTLNSIVGW-YSEARKW--NQTAIPI-LIGTKFDDFVRLPPDLQWT-IATQARAYAK---------------- 235 (283)
Q Consensus 178 ~D~~~-~~s~~~~~~~-~~~i~~~--~~~~~~i-lvgnK~DL~~~l~~~~~~~-~~~~~~~~~~---------------- 235 (283)
+|..- ..-..++.++ |+-+... ..+.|+| |++||.|+.-..+.+.-+. .+.|+..+..
T Consensus 116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~ 195 (238)
T KOG0090|consen 116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKD 195 (238)
T ss_pred EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 99753 2223344343 4433333 3566665 7899999843322211111 1222222111
Q ss_pred ----------------HcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 236 ----------------AMKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 236 ----------------~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
...+.|.+.|++++ +++++-+|+.+.
T Consensus 196 ~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 196 FTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 11245678999988 799999988764
No 264
>PRK13768 GTPase; Provisional
Probab=99.30 E-value=1.1e-11 Score=107.51 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCCc---ccchhhhccc-----CcEEEEEEECCChhhHHHH--HHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 148 AFSIWDVGGDSRS---FDHVPIACKD-----AVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 148 ~l~i~Dt~G~~~~---~~~~~~~~~~-----ad~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
.+.+||++|+.+. +.....+++. ++++++++|.+...+..+. ..|+........+.|+++|.||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~--- 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL--- 174 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh---
Confidence 5789999998763 3344333332 8999999999765443333 2344433333346778999999997
Q ss_pred CCCCcccchHHHHH------------------------HHHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 218 LPPDLQWTIATQAR------------------------AYAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 218 l~~~~~~~~~~~~~------------------------~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
++............ +..+..+ .+++++|+++++|+++++++|.+.+.
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 22221111111111 1222334 47899999999999999999988764
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.29 E-value=2.6e-11 Score=113.01 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=100.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcc---ccccc---c--ceeeeeEE--------EE---EECC-------------
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ---ERSLQ---M--AGLNLINK--------TL---MVQG------------- 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~~~~~---t--~~~~~~~~--------~~---~~~~------------- 144 (283)
...+.|.++|.-..|||||+ .+.+-.. .+... | .|...... .. ..+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 45789999999999999999 8875322 11111 1 12221100 00 0100
Q ss_pred ---eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 145 ---ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 145 ---~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
....+.+.|+||++.|.......+..+|++++|+|+++.. .-+. .+.+..+.. ..-.+.|+|.||+|+ .+.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~i~~~-lgi~~iIVvlNKiDl---v~~ 186 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLAAVEI-MKLKHIIILQNKIDL---VKE 186 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHHHHHH-cCCCcEEEEEecccc---cCH
Confidence 0236789999999988666666678999999999998641 1111 222222222 222345789999997 222
Q ss_pred CcccchHHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 221 DLQWTIATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+......++++++.+. .+.+++.+||++|+|+++|++.|.+.+.
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 2222224455555443 3568999999999999999999887553
No 266
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.28 E-value=1.6e-10 Score=96.45 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-ccc--ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------ch---h
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HV---P 165 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~---~ 165 (283)
++|+++|.+|||||||+ .+++.... ... +....+.......+++. .+.++||||-..... +. .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~--~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR--RVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe--EEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999 99987643 221 11222222233344554 578899999654321 11 1
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccc----hHHHHHHHHHHcC
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWT----IATQARAYAKAMK 238 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~----~~~~~~~~~~~~~ 238 (283)
....+.|++|+|.|+.+ -+-++ ...++.+++... -.+.|+|.|+.|. +....... .....+.+.+..+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~---l~~~~~~~~~~~~~~~l~~l~~~c~ 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDD---LEGGTLEDYLENSCEALKRLLEKCG 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccc---cCCCcHHHHHHhccHHHHHHHHHhC
Confidence 12367899999999886 22222 233444444322 2456899999995 33221111 1245566666666
Q ss_pred CcEEEEc-----CCCCcCHHHHHHHHHHHHhC
Q 023335 239 ATLFFSS-----ATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 239 ~~~~e~S-----a~~~~~v~~lf~~l~~~i~~ 265 (283)
-.|+..+ +..+.++++|++.+-+.+.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 5565443 55678899999999888876
No 267
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.5e-11 Score=108.67 Aligned_cols=159 Identities=13% Similarity=0.084 Sum_probs=101.9
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc--cc-------------------------cccc---cceeeeeEEEEEECCe
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE--QE-------------------------RSLQ---MAGLNLINKTLMVQGA 145 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~-------------------------~~~~---t~~~~~~~~~~~~~~~ 145 (283)
....++++++|...+|||||+ +++..- +. +... -.|+++......+...
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 345799999999999999999 986421 00 0000 1244555555566666
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHH--HHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSI--VGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~--~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
.+.+.|.|+||+..|-.-.-.-...||+.|||+|+.+.+ .|.-- .+-.-.+.+...-.-.|++.||+|+.. .++
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~-wde 162 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS-WDE 162 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc-cCH
Confidence 788999999997777655555668999999999998764 12110 011111222233334478999999733 222
Q ss_pred CcccchHHHHHHHHHHcCC-----cEEEEcCCCCcCHHHHH
Q 023335 221 DLQWTIATQARAYAKAMKA-----TLFFSSATHNINVNKIF 256 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~-----~~~e~Sa~~~~~v~~lf 256 (283)
++-..+..++..+.+..|. +|+.+|+..|+|+.+.=
T Consensus 163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~s 203 (428)
T COG5256 163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKKS 203 (428)
T ss_pred HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccccC
Confidence 2223345666667766654 58899999999987643
No 268
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=2.7e-11 Score=110.41 Aligned_cols=163 Identities=17% Similarity=0.214 Sum_probs=114.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----ccchhh----hc-
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI----AC- 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~----~~- 168 (283)
.-.++++|-||||||||+ ........ .+|+.+.-.++...+ +.+...+++.||||.-.- ++.... .+
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 346899999999999999 88877777 888855544443333 334466888999994321 111111 11
Q ss_pred ccCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEc
Q 023335 169 KDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~S 245 (283)
.--.+|+++.|++..+ |.+.-..+++.|+....+.|.|+|.||+|+ +..+..... .+....+...-+++++++|
T Consensus 246 HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~---m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA---MRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc---cCccccCHHHHHHHHHHHhccCceEEEec
Confidence 1124789999998765 455556889999988888899999999997 444333322 3444455555568999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCc
Q 023335 246 ATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+.+.+||.++-......++...
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred ccchhceeeHHHHHHHHHHHHH
Confidence 9999999999888888776554
No 269
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.5e-11 Score=101.94 Aligned_cols=166 Identities=17% Similarity=0.211 Sum_probs=109.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-----ccchhhhcccC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIACKDA 171 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~a 171 (283)
.-||+++|..|+||||+- -+..+... ...++..+|+....+.+-| ++.+.+||++||+.+ .......+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG-nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG-NLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh-hheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 469999999999999998 54433322 2222333444433444433 466899999999853 22445577899
Q ss_pred cEEEEEEECCChhh---HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH----HHHHHHHHHcCCcEEEE
Q 023335 172 VAILFMFDLTSRCT---LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA----TQARAYAKAMKATLFFS 244 (283)
Q Consensus 172 d~iilv~D~~~~~s---~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~e~ 244 (283)
++.|+|||+...+- |...++-++.+.++.|...+++..+|.|| ++.+.+..+. +..+.+.+..++.+|.+
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDL---v~~d~r~~if~~r~~~l~~~s~~~~~~~f~T 159 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDL---VQEDARELIFQRRKEDLRRLSRPLECKCFPT 159 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechh---cccchHHHHHHHHHHHHHHhccccccccccc
Confidence 99999999998764 33444566777777888888899999998 5555555542 33444455556778888
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCcccc
Q 023335 245 SATHNINVNKIFKFIMAKLFNLPWTV 270 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~~~~~ 270 (283)
|..+ +++-+.+..+...++..+...
T Consensus 160 siwD-etl~KAWS~iv~~lipn~~~~ 184 (295)
T KOG3886|consen 160 SIWD-ETLYKAWSSIVYNLIPNVSAL 184 (295)
T ss_pred chhh-HHHHHHHHHHHHhhCCChHHH
Confidence 8764 345555566666665555433
No 270
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.24 E-value=4.7e-11 Score=117.45 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=75.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc--cc---cc--------------cccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---RS--------------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---~~--------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
-.+|+|+|..++|||||+ +++... .. .. ...+..+.....+.++ +..+.+|||||+.+
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG~~~ 87 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPGHVD 87 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCCCcc
Confidence 458999999999999999 996321 10 00 0111222223344444 46789999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|......+++.+|++++|+|+++....+... ++..+... +.|.++++||+|+
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~~--~~p~ivviNK~D~ 139 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANRY--EVPRIAFVNKMDK 139 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHHc--CCCEEEEEECCCC
Confidence 8888888999999999999998865554433 33333332 4566899999996
No 271
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.24 E-value=9.3e-11 Score=117.87 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=71.2
Q ss_pred EEEEeCCCCCCcccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc--
Q 023335 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-- 223 (283)
Q Consensus 149 l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-- 223 (283)
+.||||||++.|..+....+..+|++++|+|+++ +.+++.+. .+... +.|.|+|+||+|+.........
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~--~iPiIVViNKiDL~~~~~~~~~~~ 601 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQY--KTPFVVAANKIDLIPGWNISEDEP 601 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHHc--CCCEEEEEECCCCccccccccchh
Confidence 7899999999998888888899999999999987 45555443 22222 4566899999997321110000
Q ss_pred ---------cchHHHHH----H----HHH------------Hc--CCcEEEEcCCCCcCHHHHHHHHHH
Q 023335 224 ---------WTIATQAR----A----YAK------------AM--KATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 224 ---------~~~~~~~~----~----~~~------------~~--~~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
....++.. + +++ .+ .++++++||++|+|+++++..|..
T Consensus 602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 00111110 1 111 11 347899999999999999987754
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.23 E-value=5.2e-11 Score=116.93 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=70.7
Q ss_pred EcCCCCcHHHhH-hhhcCccc----c----------c-----cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh
Q 023335 106 LGDCQIGKTSFV-KYVGNEQE----R----------S-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP 165 (283)
Q Consensus 106 lG~~~vGKSSLi-~~~~~~~~----~----------~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 165 (283)
+|..++|||||+ +++...-. . . .....+......+.++ .+.+.+|||||+..|.....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHHH
Confidence 699999999999 98532110 0 0 0111122222333343 46789999999988877778
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
.+++.+|++++|+|.++.........|. .+.. .+.|.++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~--~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK--YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH--cCCCEEEEEECCCCC
Confidence 8899999999999999876665544443 3332 245668999999963
No 273
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.21 E-value=6.1e-11 Score=116.96 Aligned_cols=113 Identities=12% Similarity=0.106 Sum_probs=78.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC---------------cccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN---------------EQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~---------------~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
...+|+++|..++|||||+ +++.. .+.. ...|.........+.+++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3579999999999999999 98742 1111 01133333333334456778899999999999
Q ss_pred CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
+|.......++.+|++|+|+|+.+.-..+....|.. +. ..+.|+++++||+|.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~--~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-AL--KENVKPVLFINKVDR 150 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HH--HcCCCEEEEEEChhc
Confidence 998888889999999999999987433222222322 21 224566899999996
No 274
>PRK12739 elongation factor G; Reviewed
Probab=99.20 E-value=1.2e-10 Score=114.61 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=75.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC--ccc-----c------------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE-----R------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~-----~------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
-.+|+|+|..++|||||+ +++.. ... . ....+..+.....+.+++ ..+.++||||+..
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~--~~i~liDTPG~~~ 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG--HRINIIDTPGHVD 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC--EEEEEEcCCCHHH
Confidence 578999999999999999 98642 100 0 011222333333444444 5678899999988
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
|.......++.+|++|+|+|.++...-+.. ..+..+.. ...|.|++.||+|+.
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCCC
Confidence 877788889999999999999876443332 23333333 245668999999974
No 275
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.18 E-value=5e-10 Score=103.90 Aligned_cols=163 Identities=11% Similarity=0.122 Sum_probs=119.5
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
.+..-+++.++|..++|||.|+ .|++..+. ++..++...+....+.+.|+...+.+-|.+-. ....+...- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 3445688999999999999999 99999888 45456777777777777788888888888765 222222222 78999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCcCH
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNINV 252 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~v 252 (283)
+.++||.+++.||+.+...++..... ...|.++|++|+|| .+..++...+. .+++++++++ ...+|.++...
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dl----De~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s- 571 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADL----DEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS- 571 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeecccc----chhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-
Confidence 99999999999999887766654443 45566899999996 33333333333 8899999984 45677775333
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
.++|..|+..+..-.
T Consensus 572 ~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 572 NELFIKLATMAQYPH 586 (625)
T ss_pred chHHHHHHHhhhCCC
Confidence 799999988776544
No 276
>PRK09866 hypothetical protein; Provisional
Probab=99.18 E-value=1e-09 Score=104.04 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=70.6
Q ss_pred EEEEEeCCCCCCc-cc----chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335 148 AFSIWDVGGDSRS-FD----HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 222 (283)
Q Consensus 148 ~l~i~Dt~G~~~~-~~----~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~ 222 (283)
.+.|.||||-... .. .....+.++|++++|+|.++.-+..+ ....+.+++.....|.++|.||+|+ ....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl---~dre- 305 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQ---QDRN- 305 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccC---CCcc-
Confidence 4678899997652 12 23346899999999999987544433 2344555544433577899999996 2111
Q ss_pred ccchHHHHHHHHH----HcC---CcEEEEcCCCCcCHHHHHHHHHH
Q 023335 223 QWTIATQARAYAK----AMK---ATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 223 ~~~~~~~~~~~~~----~~~---~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
....+.+..+.+ ..+ ..+|.+||+.|.|++++++.|.+
T Consensus 306 -eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 306 -SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred -cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 111333333322 222 25889999999999999999877
No 277
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.18 E-value=3.6e-10 Score=94.48 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=62.4
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
....+.++.|..-.....+ .-+|.+|.|+|+++.++... .+..++. .--++++||+|+..... ......
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi~-----~ad~~~~~k~d~~~~~~-~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGIT-----RSDLLVINKIDLAPMVG-ADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHhh-----hccEEEEEhhhcccccc-ccHHHH
Confidence 3455677777322112211 12688999999987665321 1112221 12289999999731111 111122
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 227 ATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 227 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.+.++.+ ..+.+++++||++|+|++++|+++.+.+.
T Consensus 161 ~~~~~~~--~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 161 ERDAKKM--RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHh--CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3333333 34678999999999999999999997764
No 278
>PTZ00258 GTP-binding protein; Provisional
Probab=99.15 E-value=8.8e-10 Score=100.40 Aligned_cols=83 Identities=13% Similarity=0.171 Sum_probs=59.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc-
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS- 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~- 160 (283)
..++|.|+|.||||||||+ .+.+.... ..+|.++.+.....+.+.+.. .++.+.||||...-
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3579999999999999999 99777655 777866555555555554332 34899999996532
Q ss_pred ---ccchhh---hcccCcEEEEEEECC
Q 023335 161 ---FDHVPI---ACKDAVAILFMFDLT 181 (283)
Q Consensus 161 ---~~~~~~---~~~~ad~iilv~D~~ 181 (283)
..+... .++++|++++|+|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 123333 357899999999973
No 279
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.4e-10 Score=101.75 Aligned_cols=150 Identities=11% Similarity=0.105 Sum_probs=100.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccc--cceeeeeEEEEEE-CCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQ--MAGLNLINKTLMV-QGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~--t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
+..=|-|+|.-.-|||||+ .+-+..... ..- |..+--+ ++.+ +| -.+.|.||||+..|..|+..-..-+|+
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF--~V~~p~G--~~iTFLDTPGHaAF~aMRaRGA~vtDI 227 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAF--TVTLPSG--KSITFLDTPGHAAFSAMRARGANVTDI 227 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceE--EEecCCC--CEEEEecCCcHHHHHHHHhccCccccE
Confidence 3445889999999999999 887766552 111 2222222 3333 44 457789999999999999988899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHH------HHcC--CcEEEE
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA------KAMK--ATLFFS 244 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~------~~~~--~~~~e~ 244 (283)
++||+...|.-- .+-++.|+... .+.|+|+..||+|. +.... ....+++. +++| ...+++
T Consensus 228 vVLVVAadDGVm----pQT~EaIkhAk~A~VpiVvAinKiDk----p~a~p---ekv~~eL~~~gi~~E~~GGdVQvipi 296 (683)
T KOG1145|consen 228 VVLVVAADDGVM----PQTLEAIKHAKSANVPIVVAINKIDK----PGANP---EKVKRELLSQGIVVEDLGGDVQVIPI 296 (683)
T ss_pred EEEEEEccCCcc----HhHHHHHHHHHhcCCCEEEEEeccCC----CCCCH---HHHHHHHHHcCccHHHcCCceeEEEe
Confidence 999998887421 12223333332 25566788999994 33322 22222222 2333 467899
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i 263 (283)
||++|+|++.|-+.++-..
T Consensus 297 SAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 297 SALTGENLDLLEEAILLLA 315 (683)
T ss_pred ecccCCChHHHHHHHHHHH
Confidence 9999999999998877544
No 280
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=3.1e-10 Score=96.85 Aligned_cols=166 Identities=13% Similarity=0.183 Sum_probs=103.1
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEE-EEEECCeEEEEEEEeCCCCCC-------cccchh
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINK-TLMVQGARIAFSIWDVGGDSR-------SFDHVP 165 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~ 165 (283)
....++|+++|..|+|||||+ .+..+... ...+ .+.+.... ...+++ -.+.+||+||-++ ++....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg-~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~ 112 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVG-VGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYR 112 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecc-cCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHH
Confidence 344789999999999999999 88865543 2111 12211111 122344 3478899999665 455566
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC---------CCCCc-ccchHHHHHHHHH
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------LPPDL-QWTIATQARAYAK 235 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~---------l~~~~-~~~~~~~~~~~~~ 235 (283)
.++...|.++++.+..|+.---+ .+++..+....-+.+.+++.|.+|...- .+... +..+.+.+..+.+
T Consensus 113 d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 113 DYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HHhhhccEEEEeccCCCccccCC-HHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999988752222 2444555444445677899999996311 00000 1111222222222
Q ss_pred Hc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 236 AM--KATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 236 ~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
.. --+++..|...+.|++++...+++.+...
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 22 13677788899999999999999887643
No 281
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.13 E-value=1.1e-09 Score=98.04 Aligned_cols=121 Identities=18% Similarity=0.233 Sum_probs=81.5
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----------hhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARKW--NQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D 213 (283)
.+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....++.+-.. ..+.|++|++||.|
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D 239 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKD 239 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChH
Confidence 46788999999999999999999999999999999874 2344444444444332 23567789999999
Q ss_pred CCCC----------CCCCcc-cchHHHHHHHHHH-----c-----CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 214 DFVR----------LPPDLQ-WTIATQARAYAKA-----M-----KATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 214 L~~~----------l~~~~~-~~~~~~~~~~~~~-----~-----~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
++.+ .++-.. ....+.+..+... . .+-.+.++|.+-.++..+|+.+...++..
T Consensus 240 ~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 240 LFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 6321 111111 1123334333322 1 22334599999999999999998888654
No 282
>PRK00007 elongation factor G; Reviewed
Probab=99.13 E-value=4.3e-10 Score=110.62 Aligned_cols=111 Identities=16% Similarity=0.127 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc--Cccc--c---------------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG--NEQE--R---------------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~--~~~~--~---------------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
-.+|+|+|..++|||||+ +++. +... . ....+..+.....+.+.+ ..+.+.||||...
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~--~~~~liDTPG~~~ 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD--HRINIIDTPGHVD 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC--eEEEEEeCCCcHH
Confidence 469999999999999999 9963 2110 0 011122233333444444 5688899999988
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
|.......++.+|++|+|+|....-.-+...-|. .+... ..|.|++.||+|+.
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~~--~~p~iv~vNK~D~~ 140 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADKY--KVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHHc--CCCEEEEEECCCCC
Confidence 7666677789999999999987664444433332 33332 34668999999974
No 283
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.10 E-value=2.3e-09 Score=96.71 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=59.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc---
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS--- 160 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 160 (283)
++|.++|.||||||||+ ++++.... ..+|.++.+.....+.+.+.. ..+.+.|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999 99888755 677755555555565555432 25899999996432
Q ss_pred -ccchhhh---cccCcEEEEEEECC
Q 023335 161 -FDHVPIA---CKDAVAILFMFDLT 181 (283)
Q Consensus 161 -~~~~~~~---~~~ad~iilv~D~~ 181 (283)
..+...+ ++++|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2233333 57999999999984
No 284
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.08 E-value=5.2e-10 Score=102.92 Aligned_cols=165 Identities=22% Similarity=0.410 Sum_probs=125.3
Q ss_pred CCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccC
Q 023335 93 DTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDA 171 (283)
Q Consensus 93 ~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a 171 (283)
.......++|+-|+|..++|||+|+ +|+.+.|.....+.|-.| .+.+.+++....+-+.|.+|.. -..|....
T Consensus 23 tlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~-----~aQft~wv 96 (749)
T KOG0705|consen 23 TLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWV 96 (749)
T ss_pred eeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc-----hhhhhhhc
Confidence 3344556899999999999999999 999999985555556555 4566678888888889988832 34577899
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhHC-CCCce-EEEeecCCCCCCCCCCcccch-HHHHHHHHHH-cCCcEEEEcCC
Q 023335 172 VAILFMFDLTSRCTLNSIVGWYSEARKWN-QTAIP-ILIGTKFDDFVRLPPDLQWTI-ATQARAYAKA-MKATLFFSSAT 247 (283)
Q Consensus 172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~-ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~-~~~~~~e~Sa~ 247 (283)
|++||||.+.+..+|+.+..+...+..+. ...++ ++++++.- .+.+..+++ ..+.++++.+ ..+.||++++.
T Consensus 97 davIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~----iS~~~~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 97 DAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDH----ISAKRPRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred cceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcch----hhcccccccchHHHHHHHHhcCccceeecchh
Confidence 99999999999999999988777776553 23344 68888754 333434443 5555555544 46899999999
Q ss_pred CCcCHHHHHHHHHHHHhCCc
Q 023335 248 HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~~ 267 (283)
+|.++...|+.+...+....
T Consensus 173 yGlnv~rvf~~~~~k~i~~~ 192 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQLR 192 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 99999999999998876653
No 285
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.07 E-value=1.1e-09 Score=96.15 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=98.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--c---------c--cccc-------------------eeeeeEEEEEECCe
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--R---------S--LQMA-------------------GLNLINKTLMVQGA 145 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~---------~--~~t~-------------------~~~~~~~~~~~~~~ 145 (283)
..++++-+|.---|||||| |++.+.-. + . ..+. |+.+..-...+...
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4689999999999999999 99764211 0 0 0111 22222222233455
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
+-++.+-||||+++|....-.-...||+.|+++|+... -++..+ -...|.....-..+||..||+||.+ .+++.-..
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTr-RHs~I~sLLGIrhvvvAVNKmDLvd-y~e~~F~~ 161 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTR-RHSFIASLLGIRHVVVAVNKMDLVD-YSEEVFEA 161 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhH-HHHHHHHHhCCcEEEEEEeeecccc-cCHHHHHH
Confidence 67799999999999976655566789999999998432 111111 1122222233445578999999842 11222233
Q ss_pred hHHHHHHHHHHcCC---cEEEEcCCCCcCHHH
Q 023335 226 IATQARAYAKAMKA---TLFFSSATHNINVNK 254 (283)
Q Consensus 226 ~~~~~~~~~~~~~~---~~~e~Sa~~~~~v~~ 254 (283)
+..+-..|+.++++ .++.+||..|+||-.
T Consensus 162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 162 IVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 46777888999886 478899999999743
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.04 E-value=4.2e-09 Score=95.54 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=111.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc--ccccc------------c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE--QERSL------------Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV 164 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~--~~~~~------------~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 164 (283)
-+|+||-.-.-|||||+ .++... |.+.. . .-|+.+..|...+..+.+.++|.||||+..|-...
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47899999999999999 987532 22111 1 23666666666666666889999999999999999
Q ss_pred hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------c
Q 023335 165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------M 237 (283)
Q Consensus 165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~ 237 (283)
...++=.|++++++|+.+..-- ..+..+.... ...-+||+|.||+| -+..+...+.++...+.-. +
T Consensus 86 ERvl~MVDgvlLlVDA~EGpMP-QTrFVlkKAl--~~gL~PIVVvNKiD----rp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGPMP-QTRFVLKKAL--ALGLKPIVVINKID----RPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhcceEEEEEEcccCCCC-chhhhHHHHH--HcCCCcEEEEeCCC----CCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999764211 1111122111 23567899999999 4555554555555555444 4
Q ss_pred CCcEEEEcCCCC----------cCHHHHHHHHHHHHhCCc
Q 023335 238 KATLFFSSATHN----------INVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 238 ~~~~~e~Sa~~~----------~~v~~lf~~l~~~i~~~~ 267 (283)
.+++++.|+..| .++.-+|+.|++.+....
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 567888888765 357888999888875543
No 287
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.03 E-value=2.2e-09 Score=94.49 Aligned_cols=115 Identities=18% Similarity=0.153 Sum_probs=70.1
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hh
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PI 166 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~ 166 (283)
+...++|+++|.+||||||++ ++++.... +..++.+..........+| ..+.+|||||........ ..
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 345789999999999999999 99987643 3333333222222333444 568899999977542211 11
Q ss_pred hc--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCC---CCceEEEeecCCC
Q 023335 167 AC--KDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQ---TAIPILIGTKFDD 214 (283)
Q Consensus 167 ~~--~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~---~~~~ilvgnK~DL 214 (283)
++ ...|++++|..++... +... ...++.+..... -...||+.|+.|.
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~ 165 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQF 165 (313)
T ss_pred HhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCcc
Confidence 22 2689999997655321 2111 234444444322 2345899999996
No 288
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.02 E-value=1.1e-09 Score=82.45 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=88.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchh----hhcccCcEEEE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVP----IACKDAVAILF 176 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~ad~iil 176 (283)
|++++|..|+|||||. .+.+... -+..|..+++..+ -.+||+|.---...+. ....++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~-lykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT-LYKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh-hhcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999 7765442 2323443333211 1368998432222221 12468999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v~~l 255 (283)
|-.+++++|.-. ..+.. ....+.|=|.+|.|| .++ ...+..++|..+-|. ++|++|+.++.||+++
T Consensus 71 v~~and~~s~f~-----p~f~~-~~~k~vIgvVTK~DL----aed---~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l 137 (148)
T COG4917 71 VHAANDPESRFP-----PGFLD-IGVKKVIGVVTKADL----AED---ADISLVKRWLREAGAEPIFETSAVDNQGVEEL 137 (148)
T ss_pred eecccCccccCC-----ccccc-ccccceEEEEecccc----cch---HhHHHHHHHHHHcCCcceEEEeccCcccHHHH
Confidence 999998865211 00111 113346788999996 221 224566777788887 6889999999999999
Q ss_pred HHHHHH
Q 023335 256 FKFIMA 261 (283)
Q Consensus 256 f~~l~~ 261 (283)
++.|..
T Consensus 138 ~~~L~~ 143 (148)
T COG4917 138 VDYLAS 143 (148)
T ss_pred HHHHHh
Confidence 998864
No 289
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.96 E-value=1.3e-08 Score=87.96 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=69.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc--c-c-------
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--D-H------- 163 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~-~------- 163 (283)
....++|+|+|.+|||||||+ .+++.... ...+.............++ ..+.+|||||-.... . .
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 344789999999999999999 99887643 3333222222222333444 457899999976542 1 1
Q ss_pred hhhhcc--cCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCC---CCceEEEeecCCC
Q 023335 164 VPIACK--DAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQ---TAIPILIGTKFDD 214 (283)
Q Consensus 164 ~~~~~~--~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~---~~~~ilvgnK~DL 214 (283)
...|+. ..|++++|..++.. .+..+ ...++.+..... -...++|.||+|.
T Consensus 106 I~~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 122332 57888888766543 22222 234444444322 2346899999997
No 290
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.94 E-value=7.1e-09 Score=92.81 Aligned_cols=106 Identities=12% Similarity=0.043 Sum_probs=65.0
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
.+.+.|.||+|...-... ....+|.++++.+....+.++.+. ..+... .-|+|.||+|+ .+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~----aDIiVVNKaDl---~~~~~a~~ 214 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL----ADLIVINKADG---DNKTAARR 214 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh----hheEEeehhcc---cchhHHHH
Confidence 356788999996642222 456799999997644444443332 112111 12899999997 22211111
Q ss_pred hHHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 226 IATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 226 ~~~~~~~~~~~-------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
...+.+..... +..+++.+||+++.||+++++.|.+.+-
T Consensus 215 ~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 215 AAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22333332222 2257899999999999999999998653
No 291
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.91 E-value=7.1e-09 Score=90.48 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=57.5
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc----c
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS----F 161 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~----~ 161 (283)
|.++|.||||||||+ ++++.... ..+|.++.+.....+.+.+.. ..++++|+||...- .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999 99888766 677766656555666665532 25899999995432 2
Q ss_pred cchhhh---cccCcEEEEEEECC
Q 023335 162 DHVPIA---CKDAVAILFMFDLT 181 (283)
Q Consensus 162 ~~~~~~---~~~ad~iilv~D~~ 181 (283)
.+...| ++++|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 233334 46899999999873
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.91 E-value=1.1e-08 Score=101.36 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=74.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--c----------ccc---cceeeeeEE----EEEECCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--R----------SLQ---MAGLNLINK----TLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------~~~---t~~~~~~~~----~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
-.+|+++|..++|||||+ +++...-. . ..+ ..|++.... ...+++....+.++||||+.+
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999 88742211 0 000 011211111 122355578899999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|.......++.+|++|+|+|....-.-+...-|... ... ..|+|++.||+|+
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~~--~~~~iv~iNK~D~ 151 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LRE--RVKPVLFINKVDR 151 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HHc--CCCeEEEEECchh
Confidence 988888889999999999998875433333334332 222 3466899999996
No 293
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.90 E-value=2.2e-08 Score=84.28 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
..+.+.||.|.-... ..+....+..+.|+|+++.+.... .. ..+ ...+.++++||+|+. +.. . ..
T Consensus 103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~----~~~a~iiv~NK~Dl~---~~~-~-~~ 167 (207)
T TIGR00073 103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM----FKEADLIVINKADLA---EAV-G-FD 167 (207)
T ss_pred CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH----HhhCCEEEEEHHHcc---ccc-h-hh
Confidence 345667777721100 111123455667888876543111 10 111 123558999999972 111 1 11
Q ss_pred HHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 227 ATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 227 ~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
.++..+..++. ..+++++||++|.|++++|+++.+.
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 22333333333 3789999999999999999999874
No 294
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.90 E-value=5.5e-09 Score=86.62 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=64.5
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA----- 234 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~----- 234 (283)
+..+...+++++|++++|+|+++... .|...+.....+.++++|+||+|+ .+.. ...+....+.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~~~~~~ilV~NK~Dl---~~~~---~~~~~~~~~~~~~~~ 92 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFGGNNPVILVGNKIDL---LPKD---KNLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHhcCCCcEEEEEEchhc---CCCC---CCHHHHHHHHHHHHH
Confidence 46677889999999999999987642 233333323345677899999997 2221 1122233333
Q ss_pred HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 235 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+..+. .++++||++|.|++++++.|.+.+.
T Consensus 93 ~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 93 AGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 23333 5889999999999999999988763
No 295
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=8e-09 Score=98.11 Aligned_cols=159 Identities=16% Similarity=0.173 Sum_probs=101.3
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc----cceeeeeEEE----------------EEECCeEEEEEEE
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ----MAGLNLINKT----------------LMVQGARIAFSIW 152 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~----t~~~~~~~~~----------------~~~~~~~~~l~i~ 152 (283)
....+..=|+|+|.-..|||-|+ .+-+.... ...- .+|.+|.... +.++ -+.++
T Consensus 470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP----g~lvI 545 (1064)
T KOG1144|consen 470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP----GLLVI 545 (1064)
T ss_pred chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC----eeEEe
Confidence 34555667999999999999999 88765444 2221 2343333211 1222 26789
Q ss_pred eCCCCCCcccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch---
Q 023335 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI--- 226 (283)
Q Consensus 153 Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~--- 226 (283)
||+|++.|..+......-||.+|+|+|+.. +.+.+++. .++. .+.|.||+.||+|..-.........+
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHHh--cCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 999999999999999999999999999975 34444432 2222 25566899999996221111110000
Q ss_pred ----------------HHHHHHHHHH-cC-------------CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 227 ----------------ATQARAYAKA-MK-------------ATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 227 ----------------~~~~~~~~~~-~~-------------~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
...+.+|+++ ++ +.++.+||.+|+||.+|+.+|++..
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 1112223321 11 2356799999999999999988754
No 296
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.88 E-value=2.4e-08 Score=85.18 Aligned_cols=137 Identities=16% Similarity=0.195 Sum_probs=79.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
...|+++|.+|+|||||+ .+++..-.. .....|. + .+ .......+.++||+|.. ..+ -...+.+|+++++
T Consensus 39 ~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 578999999999999999 887642211 1111121 1 11 11234567889999853 222 2345889999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCc-ccchHHHHHH-HHHH--cCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDL-QWTIATQARA-YAKA--MKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~-~~~~~~~~~~-~~~~--~~~~~~e~Sa~~~~ 250 (283)
+|.+....... ..++..+... ..|. |+|.||.|+ +.+.. .....+++++ +... .+.+++.+||++.-
T Consensus 111 iDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~---~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDL---FKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEecccc---CCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99976443222 2333333332 2344 469999997 32211 1122333433 3322 24588999999874
No 297
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.85 E-value=4.2e-08 Score=82.87 Aligned_cols=160 Identities=17% Similarity=0.113 Sum_probs=90.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-ccc--ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc--------chh---
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSL--QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD--------HVP--- 165 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~--- 165 (283)
++|+++|..|+||||++ .+++.... ... .............++|.. +.++||||-..... +..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999 88877654 221 122223333444677755 67899999432111 111
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC---CceEEEeecCCCCCCCCCCcc-cchH----HHHHHHHHHc
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT---AIPILIGTKFDDFVRLPPDLQ-WTIA----TQARAYAKAM 237 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~ilvgnK~DL~~~l~~~~~-~~~~----~~~~~~~~~~ 237 (283)
....+.+++|||+.++ +-+-++. ..++.+.+.... .-.|||.|..|. +.+... .... ..++++.+..
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~---~~~~~~~~~l~~~~~~~l~~li~~c 153 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADE---LEDDSLEDYLKKESNEALQELIEKC 153 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGG---GTTTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccc---cccccHHHHHhccCchhHhHHhhhc
Confidence 1235689999999988 3232222 223333333222 234788888884 332221 1111 3356777777
Q ss_pred CCcEEEEcCC------CCcCHHHHHHHHHHHHhCCc
Q 023335 238 KATLFFSSAT------HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 238 ~~~~~e~Sa~------~~~~v~~lf~~l~~~i~~~~ 267 (283)
+-.|+..+.+ ....+.+||+.+-+.+.++.
T Consensus 154 ~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 154 GGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8788887766 33457888888777665554
No 298
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=7.9e-08 Score=85.82 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=62.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC----------------eEEEEEEEeCCCC----
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG----------------ARIAFSIWDVGGD---- 157 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~----------------~~~~l~i~Dt~G~---- 157 (283)
.+++-|+|.||||||||. .++..... .+||..+++.....+.+.. ....+.+.|++|.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999 99888865 8899665555555554421 1356899999874
Q ss_pred CCcccchhhhc---ccCcEEEEEEECC
Q 023335 158 SRSFDHVPIAC---KDAVAILFMFDLT 181 (283)
Q Consensus 158 ~~~~~~~~~~~---~~ad~iilv~D~~ 181 (283)
++...+...|+ +++|+++.|+|..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 45566777664 8999999999876
No 299
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.84 E-value=9.6e-08 Score=80.55 Aligned_cols=151 Identities=18% Similarity=0.237 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----c---chhhhccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----D---HVPIACKD 170 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----~---~~~~~~~~ 170 (283)
.-+|+++|.|.||||||+ .+...... ..|..+........+.++|.. +++.|.||.-... . ..-...+.
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEeec
Confidence 468999999999999999 88877766 777877777778888888876 6779999853321 1 12234588
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHh----HCCC-------------------------------------------
Q 023335 171 AVAILFMFDLTSRCTLNSI-VGWYSEARK----WNQT------------------------------------------- 202 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~-~~~~~~i~~----~~~~------------------------------------------- 202 (283)
||.++.|.|.+..+.-..+ .+-++.+-- ..|+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999875433221 222222110 0000
Q ss_pred ----------------C---ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 203 ----------------A---IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 203 ----------------~---~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
. +.+-|.||+|- +..++..++|++-+ -+-+|+..+-|++.+++.+.+.+
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~----------vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ----------VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce----------ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHh
Confidence 0 12467788882 44678888888755 46678888899999999999877
Q ss_pred h
Q 023335 264 F 264 (283)
Q Consensus 264 ~ 264 (283)
-
T Consensus 288 ~ 288 (364)
T KOG1486|consen 288 N 288 (364)
T ss_pred c
Confidence 4
No 300
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.81 E-value=1.1e-08 Score=93.29 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=72.2
Q ss_pred CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHHH
Q 023335 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAK 235 (283)
Q Consensus 157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~ 235 (283)
++.|..+...+++.++++++|+|+.+.. ..|.+++.++..+.++++|+||+|| ++.... ....+..+++++
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~~~piilV~NK~DL---l~k~~~~~~~~~~l~~~~k 121 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVGGNPVLLVGNKIDL---LPKSVNLSKIKEWMKKRAK 121 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhCCCCEEEEEEchhh---CCCCCCHHHHHHHHHHHHH
Confidence 4567778888889999999999997654 3466677666556677899999998 332211 112333445567
Q ss_pred HcCC---cEEEEcCCCCcCHHHHHHHHHHH
Q 023335 236 AMKA---TLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 236 ~~~~---~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
..++ .++++||++|.|++++|+.+.+.
T Consensus 122 ~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 122 ELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 7776 48899999999999999998764
No 301
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.78 E-value=1.8e-08 Score=101.14 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=75.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--c----------ccc---cceeeeeE--EEEEE--------------CCeEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--R----------SLQ---MAGLNLIN--KTLMV--------------QGARI 147 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------~~~---t~~~~~~~--~~~~~--------------~~~~~ 147 (283)
-.+|+|+|..++|||||+ +++...-. . ..+ ..|..+.. ..+.+ ++..+
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEY 98 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCce
Confidence 468999999999999999 98753311 0 000 01222221 12222 22357
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
.++++||||+..|.......++.+|++|+|+|+.+.-......-|..... .+.|.|++.||+|+
T Consensus 99 ~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~---~~~p~i~~iNK~D~ 162 (843)
T PLN00116 99 LINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG---ERIRPVLTVNKMDR 162 (843)
T ss_pred EEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH---CCCCEEEEEECCcc
Confidence 78999999999998888888899999999999987644443333433322 24566899999996
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=98.77 E-value=2.1e-08 Score=100.44 Aligned_cols=112 Identities=15% Similarity=0.158 Sum_probs=73.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--ccc----------c---cceeeee--EEEEEEC--------CeEEEEEEEe
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSL----------Q---MAGLNLI--NKTLMVQ--------GARIAFSIWD 153 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~----------~---t~~~~~~--~~~~~~~--------~~~~~l~i~D 153 (283)
..+|+++|..++|||||+ +++...-. ... + ..|.... ...+.++ +....+.+.|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 458999999999999999 98753211 000 0 0122211 1222332 2256789999
Q ss_pred CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|||+.+|.......++.+|++|+|+|+.+.-.-+.-.-| ..+... +.|.|++.||+|+
T Consensus 99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~~--~~p~iv~iNK~D~ 156 (836)
T PTZ00416 99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQE--RIRPVLFINKVDR 156 (836)
T ss_pred CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHHc--CCCEEEEEEChhh
Confidence 999999887778888999999999999875433332223 333332 3567899999996
No 303
>PRK12289 GTPase RsgA; Reviewed
Probab=98.75 E-value=6e-08 Score=87.72 Aligned_cols=92 Identities=15% Similarity=0.123 Sum_probs=67.3
Q ss_pred ccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 239 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (283)
..+.+..+.++|.+++|+|++++. +...+..|+..+. ..+.++|||+||+|| .++. . .+...+..+.+++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DL---v~~~---~-~~~~~~~~~~~g~ 150 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADL---VSPT---E-QQQWQDRLQQWGY 150 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhc---CChH---H-HHHHHHHHHhcCC
Confidence 345556689999999999999876 4556678877663 345778999999997 2211 1 1222333356788
Q ss_pred cEEEEcCCCCcCHHHHHHHHHH
Q 023335 240 TLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
.++.+||+++.|++++++.+..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 8999999999999999998864
No 304
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.75 E-value=3.7e-09 Score=90.74 Aligned_cols=113 Identities=11% Similarity=0.130 Sum_probs=55.0
Q ss_pred EEEEEeCCCCCCcccchhhhc--------ccCcEEEEEEECCChhhHH-HHHHHHHHHHhH-CCCCceEEEeecCCCCCC
Q 023335 148 AFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLN-SIVGWYSEARKW-NQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~--------~~ad~iilv~D~~~~~s~~-~~~~~~~~i~~~-~~~~~~ilvgnK~DL~~~ 217 (283)
.+.++|||||.++...+.... ...-++++++|.....+-. .+..++..+... .-+.|.|.|.||+||
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl--- 168 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDL--- 168 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGG---
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCc---
Confidence 578899999988644433222 3445888899976443311 122333322221 235577899999997
Q ss_pred CCCCccc--------------------chHHHHHHHHHHcCC--cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 218 LPPDLQW--------------------TIATQARAYAKAMKA--TLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 218 l~~~~~~--------------------~~~~~~~~~~~~~~~--~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
+++.... ...+++.++...++. .++.+|+++++++++++..+-+.+
T Consensus 169 ~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 169 LSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp S-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 3211000 001111112222333 588899999999999998876543
No 305
>PRK00098 GTPase RsgA; Reviewed
Probab=98.74 E-value=5.2e-08 Score=86.54 Aligned_cols=86 Identities=14% Similarity=0.136 Sum_probs=64.4
Q ss_pred hcccCcEEEEEEECCChhhHHH-HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 167 ACKDAVAILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
...++|++++|+|+++++++.. +..|+..+.. .+.|+++|+||+||. . + ....++..+..+..+.+++++|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~---~-~--~~~~~~~~~~~~~~g~~v~~vS 148 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLL---D-D--LEEARELLALYRAIGYDVLELS 148 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcC---C-C--HHHHHHHHHHHHHCCCeEEEEe
Confidence 3589999999999998876555 4678777654 356779999999972 1 1 1122334455566788999999
Q ss_pred CCCCcCHHHHHHHHH
Q 023335 246 ATHNINVNKIFKFIM 260 (283)
Q Consensus 246 a~~~~~v~~lf~~l~ 260 (283)
|+++.|++++++.+.
T Consensus 149 A~~g~gi~~L~~~l~ 163 (298)
T PRK00098 149 AKEGEGLDELKPLLA 163 (298)
T ss_pred CCCCccHHHHHhhcc
Confidence 999999999998764
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.7e-07 Score=87.43 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=102.5
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcC--------------------cccccc----------ccceeeeeEEEEEECCe
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGN--------------------EQERSL----------QMAGLNLINKTLMVQGA 145 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~--------------------~~~~~~----------~t~~~~~~~~~~~~~~~ 145 (283)
+...+.++++|.-.+|||||+ +++.. +..-.| .-.|+....++..++..
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 345789999999999999999 87542 111000 11255555666667777
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHH-------HHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNS-------IVGWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~-------~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
...+.+.|.||+..|..-.-.-...||+.+||+|++.. .|+. .++...-++. ..-.-.||+.||.|+.. .
T Consensus 254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr~-Lgi~qlivaiNKmD~V~-W 330 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLRS-LGISQLIVAINKMDLVS-W 330 (603)
T ss_pred ceeEEEecCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHHH-cCcceEEEEeecccccC-c
Confidence 78899999999887776666666889999999998743 2332 1222222222 22334478999999732 2
Q ss_pred CCCcccchHHHHHHHH-HHcC-----CcEEEEcCCCCcCHHHH
Q 023335 219 PPDLQWTIATQARAYA-KAMK-----ATLFFSSATHNINVNKI 255 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~-~~~~-----~~~~e~Sa~~~~~v~~l 255 (283)
+.++-..+...+..|. +..| +.|+.||+.+|+|+...
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 2333334466677777 4444 46899999999997654
No 307
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.72 E-value=1.5e-07 Score=83.64 Aligned_cols=105 Identities=11% Similarity=0.002 Sum_probs=61.3
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
.+.+.|.||+|.-... ......+|.++++-+. .+-+++......+. +.+.++|.||+|+. .......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~---~~~~el~~~~~~l~----~~~~ivv~NK~Dl~---~~~~~~~ 192 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIP---GTGDDLQGIKAGLM----EIADIYVVNKADGE---GATNVTI 192 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecC---CccHHHHHHHHHHh----hhccEEEEEccccc---chhHHHH
Confidence 4667889999843211 1245677888887443 33344443333332 34558999999962 2111111
Q ss_pred hHHH----HHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 226 IATQ----ARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 226 ~~~~----~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
.... ...+.+. +..+++.+||+++.|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 1111 1111111 224689999999999999999998864
No 308
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.71 E-value=1.9e-07 Score=82.05 Aligned_cols=140 Identities=16% Similarity=0.236 Sum_probs=79.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cc--c--------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS--L--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH---- 163 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---- 163 (283)
.++|+|+|..|+|||||| .+++.... .. . .+..+......+.-++..+.+.++||+|-......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999 98876554 21 1 12233333334445788899999999983211000
Q ss_pred ----------hhhh-------------cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 164 ----------VPIA-------------CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 164 ----------~~~~-------------~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
...+ =.+.|++|++.+.+... +..+. ++.+++......+|-|..|+|. +..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~D--i~~mk~Ls~~vNvIPvIaKaD~---lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLD--IEFMKRLSKRVNVIPVIAKADT---LTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHH--HHHHHHHTTTSEEEEEESTGGG---S-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHH--HHHHHHhcccccEEeEEecccc---cCH
Confidence 0001 13568999999876531 22211 2334444545566889999997 555
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEc
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
++.....+.+.+-.+.+++.+|...
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f~ 182 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDFP 182 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S----
T ss_pred HHHHHHHHHHHHHHHHcCceeeccc
Confidence 4444446667777778888766533
No 309
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=5.4e-08 Score=84.75 Aligned_cols=165 Identities=15% Similarity=0.140 Sum_probs=103.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc---cccc---cceeeeeEE------------EE------EEC----CeEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE---RSLQ---MAGLNLINK------------TL------MVQ----GARIAF 149 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~---~~~~---t~~~~~~~~------------~~------~~~----~~~~~l 149 (283)
.+++|-++|.-.-|||||. .+.+---. +... |+..-|... .+ ... ...-.+
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4789999999999999999 77542111 1000 000000000 00 000 112457
Q ss_pred EEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335 150 SIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 229 (283)
Q Consensus 150 ~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~ 229 (283)
.|.|.||+|-.....-+-..-.|+.+||+..+.+..--...+.+-.+.-. .-+.+|++-||+|| ...++..+..++
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi-gik~iiIvQNKIDl---V~~E~AlE~y~q 164 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII-GIKNIIIVQNKIDL---VSRERALENYEQ 164 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh-ccceEEEEecccce---ecHHHHHHHHHH
Confidence 88999998864332222223458999999998765444434434333322 23456799999998 444444445677
Q ss_pred HHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 230 ARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 230 ~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+++|.+.- +.+++.+||..+.||+-+++.|.+.+...+
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~ 205 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPE 205 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCc
Confidence 77777653 678999999999999999999999886544
No 310
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.68 E-value=1.1e-07 Score=83.94 Aligned_cols=88 Identities=13% Similarity=0.123 Sum_probs=67.3
Q ss_pred hhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335 165 PIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 165 ~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
...+.++|.+++|+|++++. ++..+.+|+..+.. .+.++++|+||+|| .++ . .......+....+.++++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL---~~~---~-~~~~~~~~~~~~g~~v~~ 143 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADL---LDD---E-EEELELVEALALGYPVLA 143 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHC---CCh---H-HHHHHHHHHHhCCCeEEE
Confidence 34578999999999999988 88888899887765 35678999999997 221 1 112223334557889999
Q ss_pred EcCCCCcCHHHHHHHHHH
Q 023335 244 SSATHNINVNKIFKFIMA 261 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~ 261 (283)
+||+++.|+++++..+..
T Consensus 144 vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 144 VSAKTGEGLDELREYLKG 161 (287)
T ss_pred EECCCCccHHHHHhhhcc
Confidence 999999999999988763
No 311
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.5e-07 Score=79.77 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=96.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC----ccc-ccccc-ce--eeeeEEEEEE-------CCeEEEEEEEeCCCCCCccc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN----EQE-RSLQM-AG--LNLINKTLMV-------QGARIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~----~~~-~~~~t-~~--~~~~~~~~~~-------~~~~~~l~i~Dt~G~~~~~~ 162 (283)
..+++-++|.-.+|||+|. ++..- .|. ...++ .| .|..-..+.+ .++.+.+.+.|+||+..
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas--- 82 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS--- 82 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH---
Confidence 3589999999999999999 77432 233 11111 12 2211112222 36678899999999764
Q ss_pred chhhhc---ccCcEEEEEEECCChhhHHHHHH-HHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-hHHHHHHHHHHc
Q 023335 163 HVPIAC---KDAVAILFMFDLTSRCTLNSIVG-WYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT-IATQARAYAKAM 237 (283)
Q Consensus 163 ~~~~~~---~~ad~iilv~D~~~~~s~~~~~~-~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~-~~~~~~~~~~~~ 237 (283)
+.+..+ .-.|..++|+|+.....-+.... .+-++. ....|+|.||+|+ +++..+.. +.+...+..+.+
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~---lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDV---LPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEecccc---ccchhhhhHHHHHHHHHHHHH
Confidence 344443 34478899999975432222221 122221 2345788899997 56543322 244444444433
Q ss_pred -------CCcEEEEcCCCC----cCHHHHHHHHHHHHhCCc
Q 023335 238 -------KATLFFSSATHN----INVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 238 -------~~~~~e~Sa~~~----~~v~~lf~~l~~~i~~~~ 267 (283)
+.+++++||+.| +++.++.+.|...+++..
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~ 196 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPK 196 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence 268999999999 788888888888877643
No 312
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.67 E-value=7.8e-08 Score=77.08 Aligned_cols=95 Identities=12% Similarity=0.005 Sum_probs=63.1
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 240 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
+.+.++.++++|++++|+|++++....+ ..+...+. ..+.|+++|+||+|+ .+. .. .+....+.+..+.+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~--~~~~p~iiv~NK~Dl---~~~---~~-~~~~~~~~~~~~~~ 72 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL--ELGKKLLIVLNKADL---VPK---EV-LEKWKSIKESEGIP 72 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH--hCCCcEEEEEEhHHh---CCH---HH-HHHHHHHHHhCCCc
Confidence 3456777889999999999987643222 12222222 124577899999996 221 11 11222344456678
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 241 LFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 241 ~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
++.+||+++.|++++++.+.+.+..
T Consensus 73 ~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 73 VVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999999887643
No 313
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.64 E-value=9e-07 Score=84.65 Aligned_cols=181 Identities=15% Similarity=0.098 Sum_probs=102.0
Q ss_pred HHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcccccccccCCCCCCCCCCcccccccccccc
Q 023335 7 EATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSR 86 (283)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~ 86 (283)
+..+++-.+=.|..+.=-|-+..++-.+..|.+-|+-. +.++.++. .+. .... -..+.
T Consensus 48 ~~~~k~~~~rvkflrl~~Rlg~s~~~~vvaqVlyrl~l----~~~~~~~~-~~s----~d~a-----~~~a~-------- 105 (763)
T TIGR00993 48 EKLEKLQLIRVKFLRLAQRLGQTPENSIAAQVLYRLGL----LAGRQGGG-AFS----LDAA-----KAMAE-------- 105 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHH----hhccCccc-ccc----chhh-----HHHHh--------
Confidence 44456666666777777788888888888888877552 22332211 100 0000 00000
Q ss_pred ccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCc-cc-ccc-c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335 87 TFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 87 ~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 161 (283)
.........-...++|+|+|.+||||||++ .+++.. +. ... + |+.. ......+++ ..+.++||||-....
T Consensus 106 -~~ea~g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~--~ei~~~idG--~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 106 -QLEAEGQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV--QEIEGLVQG--VKIRVIDTPGLKSSA 180 (763)
T ss_pred -hhhhhhccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE--EEEEEEECC--ceEEEEECCCCCccc
Confidence 000001111234689999999999999999 999876 33 322 2 3322 122223444 457889999966431
Q ss_pred c-------c---hhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCC---ceEEEeecCCC
Q 023335 162 D-------H---VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA---IPILIGTKFDD 214 (283)
Q Consensus 162 ~-------~---~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~---~~ilvgnK~DL 214 (283)
. + ...++. ..|++|+|..++.......-..+++.+....... -.|||.|+.|.
T Consensus 181 ~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 181 SDQSKNEKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred cchHHHHHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 1 1 112333 5799999998864433222235666666654433 34899999997
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.64 E-value=1.4e-06 Score=79.27 Aligned_cols=154 Identities=10% Similarity=0.109 Sum_probs=93.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC----ccc-------------cccc-----cceeee---eEEEEE-ECCeEEEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN----EQE-------------RSLQ-----MAGLNL---INKTLM-VQGARIAFSIW 152 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~----~~~-------------~~~~-----t~~~~~---~~~~~~-~~~~~~~l~i~ 152 (283)
.+.|.|+|+.++|||||+ +|.+. ... ++.+ |+..-| ....+. .++.+..+.+.
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 688999999999999999 99876 222 1111 111222 111222 24566778899
Q ss_pred eCCCCCCc--------cc--c-------------------hhhhcc-cCcEEEEEE-ECC----ChhhHHHH-HHHHHHH
Q 023335 153 DVGGDSRS--------FD--H-------------------VPIACK-DAVAILFMF-DLT----SRCTLNSI-VGWYSEA 196 (283)
Q Consensus 153 Dt~G~~~~--------~~--~-------------------~~~~~~-~ad~iilv~-D~~----~~~s~~~~-~~~~~~i 196 (283)
||+|-..- .. + .+..+. ++++.|+|. |.+ .++.+... ..|++++
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 99983211 11 0 223445 899999988 764 22334444 4788887
Q ss_pred HhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC--CCcCHHHHHHHHHHH
Q 023335 197 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT--HNINVNKIFKFIMAK 262 (283)
Q Consensus 197 ~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~--~~~~v~~lf~~l~~~ 262 (283)
++. +.|.|+|.||.|- . .....+...++..+++++++.+|+. +.+.|..+|+.++..
T Consensus 177 k~~--~kPfiivlN~~dp------~-~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 177 KEL--NKPFIILLNSTHP------Y-HPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred Hhc--CCCEEEEEECcCC------C-CchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 764 4566899999992 1 1123344556677789998887775 344566666555443
No 315
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.64 E-value=2.5e-07 Score=74.81 Aligned_cols=62 Identities=13% Similarity=0.046 Sum_probs=43.1
Q ss_pred EEEEeCCCCCC----cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335 149 FSIWDVGGDSR----SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212 (283)
Q Consensus 149 l~i~Dt~G~~~----~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~ 212 (283)
+.|+||||-.. ...+...|+..+|++|+|.+.++..+-.+...|.+...... ...|+|.||.
T Consensus 103 ~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~--~~~i~V~nk~ 168 (168)
T PF00350_consen 103 LTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDK--SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTC--SSEEEEEE-G
T ss_pred eEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCC--CeEEEEEcCC
Confidence 78899999633 23567778899999999999998665555555555544332 2367888884
No 316
>PRK12288 GTPase RsgA; Reviewed
Probab=98.62 E-value=2.9e-07 Score=83.27 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=66.7
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
..++|.+++|++++...++..+..|+..+.. .+.+++||+||+|| .++.. .....+..+..+..+.+++++||+
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL---~~~~~-~~~~~~~~~~y~~~g~~v~~vSA~ 191 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDL---LDDEG-RAFVNEQLDIYRNIGYRVLMVSSH 191 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccC---CCcHH-HHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3579999999999988899999999876543 35677999999997 33221 111223333445678899999999
Q ss_pred CCcCHHHHHHHHHH
Q 023335 248 HNINVNKIFKFIMA 261 (283)
Q Consensus 248 ~~~~v~~lf~~l~~ 261 (283)
++.|++++++.|..
T Consensus 192 tg~GideL~~~L~~ 205 (347)
T PRK12288 192 TGEGLEELEAALTG 205 (347)
T ss_pred CCcCHHHHHHHHhh
Confidence 99999999998865
No 317
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.61 E-value=7.3e-07 Score=80.63 Aligned_cols=134 Identities=18% Similarity=0.248 Sum_probs=87.0
Q ss_pred ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh----------hhHHHHHHHHHHHHh
Q 023335 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----------CTLNSIVGWYSEARK 198 (283)
Q Consensus 129 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~~ 198 (283)
+|+|+.. ..+.+++ +.+.+||++|+...+..|..++.+++++|+|+|+++. ..+++....++.+..
T Consensus 170 ~T~Gi~~--~~f~~~~--~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~ 245 (342)
T smart00275 170 PTTGIQE--TAFIVKK--LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICN 245 (342)
T ss_pred CccceEE--EEEEECC--eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHc
Confidence 4555543 2444444 5678999999999999999999999999999999973 234444444455443
Q ss_pred H--CCCCceEEEeecCCCCCC----------CCCCcccchHHHHHHHHHH-----cC------CcEEEEcCCCCcCHHHH
Q 023335 199 W--NQTAIPILIGTKFDDFVR----------LPPDLQWTIATQARAYAKA-----MK------ATLFFSSATHNINVNKI 255 (283)
Q Consensus 199 ~--~~~~~~ilvgnK~DL~~~----------l~~~~~~~~~~~~~~~~~~-----~~------~~~~e~Sa~~~~~v~~l 255 (283)
. ..+.|++|++||.|++.+ +++-......+.+.++... .. +-.+.++|.+-.++..+
T Consensus 246 ~~~~~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v 325 (342)
T smart00275 246 SRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVV 325 (342)
T ss_pred CccccCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHH
Confidence 2 235677899999997321 1111111123333333221 11 22345899999999999
Q ss_pred HHHHHHHHhCC
Q 023335 256 FKFIMAKLFNL 266 (283)
Q Consensus 256 f~~l~~~i~~~ 266 (283)
|+.+...++..
T Consensus 326 ~~~v~~~I~~~ 336 (342)
T smart00275 326 FDAVKDIILQR 336 (342)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 318
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3.7e-07 Score=82.86 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=96.4
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
|...|.---|||||+ .+.+..-. ....--|.+........+-.+..+.|.|.+|.+++-...-..+...|..+||+|
T Consensus 3 i~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~ 82 (447)
T COG3276 3 IGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVA 82 (447)
T ss_pred EEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEe
Confidence 566777788999999 87766544 222222333333333444444578999999999876555555678899999999
Q ss_pred CCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH---HcCCcEEEEcCCCCcCHH
Q 023335 180 LTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK---AMKATLFFSSATHNINVN 253 (283)
Q Consensus 180 ~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~---~~~~~~~e~Sa~~~~~v~ 253 (283)
.++. ++.+.+ .-+.. ....-.++|.||+|+ ..+. .+.+..+++.. .-.+++|.+|+++|+||+
T Consensus 83 ~deGl~~qtgEhL----~iLdl-lgi~~giivltk~D~---~d~~---r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~ 151 (447)
T COG3276 83 ADEGLMAQTGEHL----LILDL-LGIKNGIIVLTKADR---VDEA---RIEQKIKQILADLSLANAKIFKTSAKTGRGIE 151 (447)
T ss_pred CccCcchhhHHHH----HHHHh-cCCCceEEEEecccc---ccHH---HHHHHHHHHHhhcccccccccccccccCCCHH
Confidence 9653 333332 22222 223344899999996 2211 12222222222 224578999999999999
Q ss_pred HHHHHHHHHHh
Q 023335 254 KIFKFIMAKLF 264 (283)
Q Consensus 254 ~lf~~l~~~i~ 264 (283)
++.+.|.+..-
T Consensus 152 ~Lk~~l~~L~~ 162 (447)
T COG3276 152 ELKNELIDLLE 162 (447)
T ss_pred HHHHHHHHhhh
Confidence 99999988774
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.58 E-value=5.5e-07 Score=73.53 Aligned_cols=79 Identities=16% Similarity=0.161 Sum_probs=50.3
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCC--CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcC
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQT--AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSA 246 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa 246 (283)
.+.-|+|+|++..+-. -++-.|. .--++|.||.||..... ...+...+-+++. +.+++++|+
T Consensus 118 d~~~v~VidvteGe~~---------P~K~gP~i~~aDllVInK~DLa~~v~-----~dlevm~~da~~~np~~~ii~~n~ 183 (202)
T COG0378 118 DHLRVVVIDVTEGEDI---------PRKGGPGIFKADLLVINKTDLAPYVG-----ADLEVMARDAKEVNPEAPIIFTNL 183 (202)
T ss_pred hceEEEEEECCCCCCC---------cccCCCceeEeeEEEEehHHhHHHhC-----ccHHHHHHHHHHhCCCCCEEEEeC
Confidence 3478889998876421 0110111 11279999999832221 1134444445554 478999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q 023335 247 THNINVNKIFKFIMAKL 263 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i 263 (283)
++|+|++++++++....
T Consensus 184 ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 184 KTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCcCHHHHHHHHHhhc
Confidence 99999999999987654
No 320
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.55 E-value=5.2e-07 Score=77.15 Aligned_cols=117 Identities=11% Similarity=0.058 Sum_probs=60.8
Q ss_pred EEEEEEEeCCCCCC-cc-----cchhhhcc--cCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 146 RIAFSIWDVGGDSR-SF-----DHVPIACK--DAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~-~~-----~~~~~~~~--~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
.....+.|||||-+ |. .+....+. .--++++++|... +.+|-.- -+|..-.-+.-+-|.|+|.||+|+
T Consensus 115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSN-MlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSN-MLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHH-HHHHHHHHHhccCCeEEEEecccc
Confidence 35578899999864 21 12212222 3346777777643 3333221 112211122334555899999996
Q ss_pred CCCCCCCcccch-HHHHHHHHH------------H---------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 215 FVRLPPDLQWTI-ATQARAYAK------------A---------MKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 215 ~~~l~~~~~~~~-~~~~~~~~~------------~---------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
...-- ...+.. .+.-++-.+ . .++..+-+|+.+|.|.+++|..+-+.+-
T Consensus 194 ~d~~f-a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 194 SDSEF-ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccHH-HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 21100 001111 111111111 0 1355778999999999999999877653
No 321
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.55 E-value=8e-07 Score=79.47 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=79.6
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhH-------HHHH---HHHHHHHhH--CCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTL-------NSIV---GWYSEARKW--NQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~-------~~~~---~~~~~i~~~--~~~~~~ilvgnK~D 213 (283)
...+.++|++||..-+.-|.+++.+++++|||.++++.+.. +.+. .+.+.|-.. -.+..+||..||.|
T Consensus 194 ~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~D 273 (354)
T KOG0082|consen 194 GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKD 273 (354)
T ss_pred CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHH
Confidence 36688899999988888899999999999999999864321 1222 333344332 23567789999999
Q ss_pred CCCC----------CCCCcccchHHHHHHHHHH--------c--CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 214 DFVR----------LPPDLQWTIATQARAYAKA--------M--KATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 214 L~~~----------l~~~~~~~~~~~~~~~~~~--------~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
|+.. +++-......+++..+.+. . .+-+..+.|.+-.+|+.+|..+...+....
T Consensus 274 LFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 274 LFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 8431 1211111123344333321 1 122345889999999999999998887643
No 322
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=8.7e-07 Score=83.73 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=79.4
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCcccc---------cccc-------ceeeeeEE--EEE---ECCeEEEEEEEeC
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQER---------SLQM-------AGLNLINK--TLM---VQGARIAFSIWDV 154 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~---------~~~t-------~~~~~~~~--~~~---~~~~~~~l~i~Dt 154 (283)
.....+|.++|.-+.|||+|+ .++...-.. .|.+ .|..+... ++- ..++.+-+++.||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 344678999999999999999 876543221 1111 12232222 221 2567788999999
Q ss_pred CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
+|+-.|.+.....++-+|++++|+|+.+.-+++.-+-+.+.++ .+.++++|.||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence 9999999988889999999999999988776654322222222 13455799999994
No 323
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.46 E-value=1.3e-06 Score=79.01 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=76.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-ccccccee---eeeEEEEEECCeEEEEEEEeCCCCCCcccchhh-----hc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGL---NLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI-----AC 168 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~ 168 (283)
..++|+|+|++|+|||||| .+.+-.-. +....+|+ +.....+.... .-.+.+||.||...-.-.... -+
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~ 112 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF 112 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence 4789999999999999999 88543222 11122222 11112222221 124788999995432222222 24
Q ss_pred ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCC--CCC---CC-CCcccchHHHHHHHHH----Hc
Q 023335 169 KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDD--FVR---LP-PDLQWTIATQARAYAK----AM 237 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL--~~~---l~-~~~~~~~~~~~~~~~~----~~ 237 (283)
...|.+|++.+- .|.... .+..++.+. .++..+|-||+|. .+. .+ .-.+....+++++.+. +.
T Consensus 113 ~~yD~fiii~s~----rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 113 YRYDFFIIISSE----RFTENDVQLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp GG-SEEEEEESS----S--HHHHHHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred cccCEEEEEeCC----CCchhhHHHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 678988888752 243333 334445443 4456799999993 000 00 0111122334444433 23
Q ss_pred CC---cEEEEcCCCC--cCHHHHHHHHHHHHhCC
Q 023335 238 KA---TLFFSSATHN--INVNKIFKFIMAKLFNL 266 (283)
Q Consensus 238 ~~---~~~e~Sa~~~--~~v~~lf~~l~~~i~~~ 266 (283)
|+ ++|.+|+.+- .++..+.+.|.+.+...
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 43 5788998764 45788888888776544
No 324
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=1.1e-06 Score=73.84 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHhHhhhcCccccccccceeeeeEEE--EEECCeEEEEEEEeCCCCCCcccc---hhhhcccCcEEE
Q 023335 101 LKISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKT--LMVQGARIAFSIWDVGGDSRSFDH---VPIACKDAVAIL 175 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~~---~~~~~~~ad~ii 175 (283)
.+|+++|...+||||+-+.+-.+.. +..|.-.+-..+. -.+.+.-+.+++||.|||-.+-.- ....++++-+.|
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 4599999999999999843332222 1112211111111 112234578999999999775332 234578999999
Q ss_pred EEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch----HHHHHHHHHHc-----CCcEEEE
Q 023335 176 FMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKAM-----KATLFFS 244 (283)
Q Consensus 176 lv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~----~~~~~~~~~~~-----~~~~~e~ 244 (283)
+|.|..+. +.+..+.......-+.+++.-.=+...|.|- ++++.+... .+...+-.... .+.|+.+
T Consensus 107 fvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDG---Lsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 107 FVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDG---LSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccC---CchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99998653 2222222222222222443333388899995 554433222 22222222222 3456777
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCccccccc
Q 023335 245 SATHNINVNKIFKFIMAKLFNLPWTVKRN 273 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~ 273 (283)
|-. ...|-|.|..+++.+..+-...|+-
T Consensus 184 SIy-DHSIfEAFSkvVQkLipqLptLEnl 211 (347)
T KOG3887|consen 184 SIY-DHSIFEAFSKVVQKLIPQLPTLENL 211 (347)
T ss_pred eec-chHHHHHHHHHHHHHhhhchhHHHH
Confidence 776 4569999999999888777666554
No 325
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.42 E-value=1.2e-06 Score=70.37 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=56.8
Q ss_pred hcccCcEEEEEEECCChhh--HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 167 ACKDAVAILFMFDLTSRCT--LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s--~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
.++++|++++|.|++++.. ...+.+++ .....+.|+|+|.||+|| ++. ....+....+.+.+....+.+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l---~~~~~~~p~ilVlNKiDl---~~~---~~~~~~~~~~~~~~~~~~~~i 75 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYL---KKEKPHKHLIFVLNKCDL---VPT---WVTARWVKILSKEYPTIAFHA 75 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHH---HhccCCCCEEEEEEchhc---CCH---HHHHHHHHHHhcCCcEEEEEe
Confidence 4679999999999988632 22333333 323334677999999997 221 112223333333333334679
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i 263 (283)
||+.+.|++++++.+.+.+
T Consensus 76 Sa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 76 SINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred eccccccHHHHHHHHHHHH
Confidence 9999999999999987654
No 326
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.41 E-value=5.1e-07 Score=71.17 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=38.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 157 (283)
+++++|.+|||||||+ ++.+..........|.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 8999999999999999 998887653222333333444555554 4689999994
No 327
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.41 E-value=5e-07 Score=78.95 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc--cchh------hhccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF--DHVP------IACKD 170 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~--~~~~------~~~~~ 170 (283)
--|.++|-.|+|||||+ ++.+.... ...-.-..|...+....+... .+-+-||-|--.-- .+.. .-...
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 35889999999999999 98854433 222233334434444444333 24567998832111 1111 12468
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-Cce----EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIP----ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~----ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
+|.++.|.|++.++.-+.....+.-++...-. .|. |=|-||.|......+ .+.++ .+.+|
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e-------------~E~n~--~v~is 322 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE-------------EEKNL--DVGIS 322 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc-------------cccCC--ccccc
Confidence 99999999999987655555555555544321 221 346799995221111 12223 57799
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023335 246 ATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~ 265 (283)
|++|+|.+++.+.+-..+..
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999999887766543
No 328
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.37 E-value=1.7e-06 Score=84.36 Aligned_cols=113 Identities=12% Similarity=0.136 Sum_probs=80.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc--ccc--ccc-------------cceeeeeEEEEEECCe-EEEEEEEeCCCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QER--SLQ-------------MAGLNLINKTLMVQGA-RIAFSIWDVGGDSR 159 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~--~~~-------------t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~ 159 (283)
...+|.|+|.-.+|||||. +++... ... ... ..|++.....+...-. .+.++++||||+-.
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 3568999999999999999 875321 110 000 1244444443333223 57899999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|.......++-+|++++|+|+...-..+.-.-|.+..+. +.|+|++.||+|.
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR 140 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDR 140 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccc
Confidence 999999999999999999999876555554556555433 5577999999995
No 329
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.35 E-value=1e-05 Score=72.41 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=98.1
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccc------------e--eeeeEEEEEECC----------------
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMA------------G--LNLINKTLMVQG---------------- 144 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~------------~--~~~~~~~~~~~~---------------- 144 (283)
....+.|.+.|.-+.|||||+ .++.+...+ .-.|. | .+..-..+-+++
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 445788999999999999999 998776651 11110 1 111112222221
Q ss_pred -----eEEEEEEEeCCCCCCccc--chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 145 -----ARIAFSIWDVGGDSRSFD--HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 145 -----~~~~l~i~Dt~G~~~~~~--~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
.+--+.+.||.|+|.|.. +.-.+=.+.|-.+|++-+++.-+--. ++.+--+. .-+-|.|++.||+|+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~~--a~~lPviVvvTK~D~--- 267 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIAL--AMELPVIVVVTKIDM--- 267 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhhh--hhcCCEEEEEEeccc---
Confidence 123467899999998743 33334468899999998887643211 11111111 124567899999997
Q ss_pred CCCCcccchHHHHHHHHHHcC-------------------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 218 LPPDLQWTIATQARAYAKAMK-------------------------ATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~-------------------------~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.+++....+.+++..+.+..+ +|+|++|+.+|+|++-+. .+...+.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~-e~f~~Lp 338 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLD-EFFLLLP 338 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHH-HHHHhCC
Confidence 555554545566655554321 478999999999976543 3444443
No 330
>PRK13796 GTPase YqeH; Provisional
Probab=98.34 E-value=3e-06 Score=77.45 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=60.8
Q ss_pred ccCc-EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcCC---cEEE
Q 023335 169 KDAV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKA---TLFF 243 (283)
Q Consensus 169 ~~ad-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~~---~~~e 243 (283)
..++ .+++|+|+.|.. ..|...+.++..+.++++|+||+|| ++... .....+....+++.+++ .++.
T Consensus 67 ~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~~kpviLViNK~DL---l~~~~~~~~i~~~l~~~~k~~g~~~~~v~~ 138 (365)
T PRK13796 67 GDSDALVVNVVDIFDFN-----GSWIPGLHRFVGNNPVLLVGNKADL---LPKSVKKNKVKNWLRQEAKELGLRPVDVVL 138 (365)
T ss_pred cccCcEEEEEEECccCC-----CchhHHHHHHhCCCCEEEEEEchhh---CCCccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence 4445 999999998743 3466667666556777899999998 33221 11123334455666676 5789
Q ss_pred EcCCCCcCHHHHHHHHHHHH
Q 023335 244 SSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i 263 (283)
+||+++.|++++++.+.+..
T Consensus 139 vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 139 ISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred EECCCCCCHHHHHHHHHHhc
Confidence 99999999999999997653
No 331
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.33 E-value=6.5e-06 Score=70.62 Aligned_cols=66 Identities=17% Similarity=0.116 Sum_probs=39.4
Q ss_pred EEEEEEeCCCCCCc-------------ccchhhhcc-cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335 147 IAFSIWDVGGDSRS-------------FDHVPIACK-DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~-------------~~~~~~~~~-~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~ 212 (283)
..+.+.|+||-... ..+...|++ ..+++++|+|++..-+-.+.....+.+.. ...+.|+|.||.
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~ 202 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL 202 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence 45788999997421 124556777 45589999987643221122222222222 244668999999
Q ss_pred CC
Q 023335 213 DD 214 (283)
Q Consensus 213 DL 214 (283)
|+
T Consensus 203 D~ 204 (240)
T smart00053 203 DL 204 (240)
T ss_pred CC
Confidence 96
No 332
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=6.9e-06 Score=69.42 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=98.6
Q ss_pred EEEEEcCCCC--cHHHhH-hhhcCccc-cccccceeeeeEEEEEEC--CeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 102 KISLLGDCQI--GKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ--GARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 102 KI~vlG~~~v--GKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
-++|+|..|| ||-+|+ ++....|. +........+..+++.-. ...+.+.|--.. .+.+.... .......+++
T Consensus 6 ~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic-de~~lpn~-~~a~pl~a~v 83 (418)
T KOG4273|consen 6 CALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC-DEKFLPNA-EIAEPLQAFV 83 (418)
T ss_pred eEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc-chhccCCc-ccccceeeEE
Confidence 4688999999 999999 99988887 333333344444443211 112333332221 12221111 1123456899
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC---------------C----------------------
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR---------------L---------------------- 218 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~---------------l---------------------- 218 (283)
+|||++....+..++.|+....-.. -.+.+.+|||.|.... .
T Consensus 84 mvfdlse~s~l~alqdwl~htdins-fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgisetegssl 162 (418)
T KOG4273|consen 84 MVFDLSEKSGLDALQDWLPHTDINS-FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEGSSL 162 (418)
T ss_pred EEEeccchhhhHHHHhhcccccccc-chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccccccccc
Confidence 9999999999999999987532211 1234578999994210 0
Q ss_pred --CCCcccchHHHHHHHHHHcCCcEEEEcCC------------CCcCHHHHHHHHHHHHhC
Q 023335 219 --PPDLQWTIATQARAYAKAMKATLFFSSAT------------HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 219 --~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~------------~~~~v~~lf~~l~~~i~~ 265 (283)
+++..-.+...+.+|+.++|+.++|.+|. +..||+.+|..+...+..
T Consensus 163 lgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahmwp 223 (418)
T KOG4273|consen 163 LGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMWP 223 (418)
T ss_pred cccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhccCc
Confidence 00111123566788999999999998884 235788898888776544
No 333
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.30 E-value=3.9e-06 Score=73.59 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=36.6
Q ss_pred ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 204 IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 204 ~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
.-++|.||+|| ++.. ... .+...+..+.. ..+++.+||++|+|+++++++|.+.
T Consensus 232 ADIVVLNKiDL---l~~~-~~d-le~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 232 ASLMLLNKVDL---LPYL-NFD-VEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CcEEEEEhHHc---Cccc-HHH-HHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44899999997 3211 111 22233333332 5789999999999999999999774
No 334
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.29 E-value=4.5e-06 Score=66.84 Aligned_cols=84 Identities=17% Similarity=0.016 Sum_probs=54.0
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335 172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 251 (283)
Q Consensus 172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 251 (283)
|++++|+|+.++.+... .|+........+.|+|+|.||+|| .+. ....+....+.+..+..++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~~p~IiVlNK~Dl---~~~---~~~~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKGKKLILVLNKADL---VPK---EVLRKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCCCCEEEEEechhc---CCH---HHHHHHHHHHHhhCCceEEEEeccCCcC
Confidence 68999999988765442 233311112335677999999997 221 1111212233333455678899999999
Q ss_pred HHHHHHHHHHHH
Q 023335 252 VNKIFKFIMAKL 263 (283)
Q Consensus 252 v~~lf~~l~~~i 263 (283)
++++++.+.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999987654
No 335
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.22 E-value=2.9e-06 Score=67.89 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=37.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
..+++++|.+|+|||||+ ++.+.......++.|.+.....+..++ .+.+|||||
T Consensus 101 ~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 578999999999999999 998765444444555443323333332 588999998
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.20 E-value=3.2e-06 Score=68.86 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=38.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 157 (283)
..++++++|.+|||||||+ ++.+..+....+..+.+.....+.++ ..+.+|||||.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 4579999999999999999 99987765222222333333334443 34789999994
No 337
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=6.4e-06 Score=64.89 Aligned_cols=77 Identities=16% Similarity=0.078 Sum_probs=52.3
Q ss_pred hhhcccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335 165 PIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242 (283)
Q Consensus 165 ~~~~~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
...+.++|++++|+|+.++.+.. .+..|+... ..+.|+++|.||+|| .++ . ...+..++.+..+..++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~~~k~~iivlNK~DL---~~~---~-~~~~~~~~~~~~~~~ii 75 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---DPRKKNILLLNKADL---LTE---E-QRKAWAEYFKKEGIVVV 75 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---cCCCcEEEEEechhc---CCH---H-HHHHHHHHHHhcCCeEE
Confidence 34578999999999998876544 444555433 245677999999997 221 1 12334455556677899
Q ss_pred EEcCCCCcC
Q 023335 243 FSSATHNIN 251 (283)
Q Consensus 243 e~Sa~~~~~ 251 (283)
++||+++.+
T Consensus 76 ~iSa~~~~~ 84 (141)
T cd01857 76 FFSALKENA 84 (141)
T ss_pred EEEecCCCc
Confidence 999998764
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.14 E-value=4.7e-06 Score=67.99 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=37.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
..++++++|.+|||||||+ ++.+.... ...| |.+.....+.++. .+.++||||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~p--g~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATP--GVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCC--CeEcceEEEEeCC---CEEEEECcC
Confidence 3589999999999999999 99887654 4444 3332223333432 477899998
No 339
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=3.1e-05 Score=70.45 Aligned_cols=132 Identities=9% Similarity=0.087 Sum_probs=86.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc-Cc-c------c----ccc---------ccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG-NE-Q------E----RSL---------QMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~-~~-~------~----~~~---------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
++-..+||-.|-+|||||. +++- +. . . ... ...|++..+..+.++.....+++.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 3456889999999999999 7642 11 0 0 000 1236677666777777778899999999
Q ss_pred CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA 236 (283)
Q Consensus 157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~ 236 (283)
++.|..-...-+.-+|..+.|.|+...---+. .++++-.+. .+.|++-..||.|- + -+...+.+.++-+.
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-~KLfeVcrl--R~iPI~TFiNKlDR----~---~rdP~ELLdEiE~~ 160 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-LKLFEVCRL--RDIPIFTFINKLDR----E---GRDPLELLDEIEEE 160 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHH-HHHHHHHhh--cCCceEEEeecccc----c---cCChHHHHHHHHHH
Confidence 99998888888899999999999876421111 233332222 25566788999994 1 12234444445555
Q ss_pred cCCc
Q 023335 237 MKAT 240 (283)
Q Consensus 237 ~~~~ 240 (283)
+++.
T Consensus 161 L~i~ 164 (528)
T COG4108 161 LGIQ 164 (528)
T ss_pred hCcc
Confidence 5543
No 340
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.14 E-value=5.8e-06 Score=66.32 Aligned_cols=52 Identities=13% Similarity=0.286 Sum_probs=35.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
.++|+++|.+|||||||+ ++.+.... ...+ |.......+..+. .+.+.||||
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~--g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP--GETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC--CeeEeEEEEEcCC---CEEEEECcC
Confidence 578999999999999999 99887654 3333 2222222333322 256899998
No 341
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.11 E-value=1.9e-05 Score=68.34 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=91.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcC-------c---cc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGN-------E---QE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~-------~---~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
.....+|..+|.-.-|||||. .+..- . |. ..-| ..|+.+....+.++..+-.+...|+||+..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 345789999999999999998 66321 1 11 1111 2366666666777666667778999999887
Q ss_pred ccchhhhcccCcEEEEEEECCCh---hhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCC-CcccchHHHHHHHHH
Q 023335 161 FDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP-DLQWTIATQARAYAK 235 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~-~~~~~~~~~~~~~~~ 235 (283)
-...-.-..+.|+.|||++.+|. ++-+.+. ..++ -..|- +++.||+|+ .++ +....+..+.+++..
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL----larq--vGvp~ivvflnK~Dm---vdd~ellelVemEvreLLs 159 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL----LARQ--VGVPYIVVFLNKVDM---VDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh----hhhh--cCCcEEEEEEecccc---cCcHHHHHHHHHHHHHHHH
Confidence 54333334578999999999874 3333321 1111 13334 577999998 332 223344788899999
Q ss_pred HcCC-----cEEEEcCC
Q 023335 236 AMKA-----TLFFSSAT 247 (283)
Q Consensus 236 ~~~~-----~~~e~Sa~ 247 (283)
.+++ +++.-||.
T Consensus 160 ~y~f~gd~~Pii~gSal 176 (394)
T COG0050 160 EYGFPGDDTPIIRGSAL 176 (394)
T ss_pred HcCCCCCCcceeechhh
Confidence 9976 45666654
No 342
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.11 E-value=5.9e-06 Score=67.30 Aligned_cols=90 Identities=14% Similarity=0.028 Sum_probs=58.8
Q ss_pred chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335 163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242 (283)
Q Consensus 163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
.....+.+||++++|+|++++....+ ..+... ..+.++++|.||+|| .++ .. .....++.+..+..++
T Consensus 12 ~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~----~~~k~~ilVlNK~Dl---~~~---~~-~~~~~~~~~~~~~~vi 79 (171)
T cd01856 12 QIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKI----LGNKPRIIVLNKADL---ADP---KK-TKKWLKYFESKGEKVL 79 (171)
T ss_pred HHHHHHhhCCEEEEEeeccCccCcCC-hhhHhH----hcCCCEEEEEehhhc---CCh---HH-HHHHHHHHHhcCCeEE
Confidence 34556789999999999987643221 112222 234677999999997 221 11 1112223333345678
Q ss_pred EEcCCCCcCHHHHHHHHHHHHh
Q 023335 243 FSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.+||+++.|++++.+.+...+.
T Consensus 80 ~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 80 FVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred EEECCCcccHHHHHHHHHHHHH
Confidence 9999999999999999988763
No 343
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.10 E-value=3.8e-05 Score=64.67 Aligned_cols=156 Identities=10% Similarity=0.165 Sum_probs=90.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc---------cccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE---------RSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRS------- 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~---------~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------- 160 (283)
..++|+|+|.+|.|||||+ .+...... ..++ |+.+......+.-++.+.++.+.||+|--..
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 3689999999999999999 76543322 1233 5555555566666788899999999983211
Q ss_pred -------ccchhhhc--------------ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 161 -------FDHVPIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 161 -------~~~~~~~~--------------~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
+.....|+ ...+++++....+. .++.-+. .+++.+.+ -.-+|-|.-|+|- +
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDt---l 197 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADT---L 197 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccc---c
Confidence 01111222 24466666665553 2333332 33444332 2234567789994 4
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
.-+++..-.+.+++-...+++.+|.--+.+.+.=+..++.-++
T Consensus 198 TleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 198 TLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred cHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 4344444466677777788888776444443333344444444
No 344
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.10 E-value=2.2e-05 Score=71.15 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCe---------------EEEEEEEeCCCCCC---
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSR--- 159 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~--- 159 (283)
+|+-|+|.||||||||. .+.+... . .+||.+..+.....+.+.+. ...+.+.|+||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 79999999999999999 8888877 5 66775544555556666542 23578899998544
Q ss_pred -cccchhh---hcccCcEEEEEEECC
Q 023335 160 -SFDHVPI---ACKDAVAILFMFDLT 181 (283)
Q Consensus 160 -~~~~~~~---~~~~ad~iilv~D~~ 181 (283)
...+... .++++|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2233333 458999999999984
No 345
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.08 E-value=4.9e-05 Score=67.86 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=86.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccc-----------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-----
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERS-----------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----- 161 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----- 161 (283)
..+.|+++|..|.|||||+ .+++...... .+++.+......+.-++..+.+.+.||+|--.+-
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999 9987643311 1233344444444457888999999999832210
Q ss_pred ---------cchhhhc--------------ccCcEEEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 162 ---------DHVPIAC--------------KDAVAILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 162 ---------~~~~~~~--------------~~ad~iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
.....|+ .+.+++++..-.+.. .+..+. ..+.++ ....-.|-|..|+|.
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~l---s~~vNlIPVI~KaD~--- 174 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRL---SKRVNLIPVIAKADT--- 174 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHH---hcccCeeeeeecccc---
Confidence 1111121 245677777665432 222222 233333 333445678889997
Q ss_pred CCCCcccchHHHHHHHHHHcCCcEEE
Q 023335 218 LPPDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
+..++.....+.+.+....+++++|.
T Consensus 175 lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 175 LTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 66655555677788888888998885
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.07 E-value=1.6e-05 Score=68.40 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=88.2
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCC----------CCcccc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----------SRSFDH 163 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~ 163 (283)
......++++|..|||||||+ .++..+.. ...++.|.......+.++ -.+.+.|.+|- +.+..+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence 455789999999999999999 88876655 222244433322233333 23556798981 223445
Q ss_pred hhhhcccCc---EEEEEEECCCh--hhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccch---HHHHHHHH
Q 023335 164 VPIACKDAV---AILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWTI---ATQARAYA 234 (283)
Q Consensus 164 ~~~~~~~ad---~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~~---~~~~~~~~ 234 (283)
...|+.+-+ -+++..|++.+ .+-.....|+.+ +..| .+|.||||.......-..... ......+.
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~ 283 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI 283 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhcc
Confidence 555554332 45555666543 111223466655 4455 699999995322110000110 11111111
Q ss_pred ---HHcCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 235 ---KAMKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 235 ---~~~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
.....+++.+|+.++.|+++++-.+.+.
T Consensus 284 ~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 284 RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeccCCceeeecccccCceeeeeehhhh
Confidence 1223567789999999999988776553
No 347
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=5.6e-05 Score=67.49 Aligned_cols=115 Identities=12% Similarity=0.198 Sum_probs=71.2
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccc------------------------cccceeeeeEEEEEECC-------
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS------------------------LQMAGLNLINKTLMVQG------- 144 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~------------------------~~t~~~~~~~~~~~~~~------- 144 (283)
...+++++++|...+|||||+ -+..++..+. ..+.|++-..+.+++..
T Consensus 164 qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 164 QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 446899999999999999999 8876654411 11234444444444421
Q ss_pred ---eEEEEEEEeCCCCCCcccchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 145 ---ARIAFSIWDVGGDSRSFDHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 145 ---~~~~l~i~Dt~G~~~~~~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
...-+.++|.+|+.+|....-.-+. ..|..++|++++....... ++.+-.+... +.|.+++.+|+||
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~Dl 315 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKMDL 315 (591)
T ss_pred HhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEeecc
Confidence 1234788999999998654433332 3467788888766543221 2223333222 4456799999997
No 348
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=8.4e-05 Score=66.74 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=85.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccc--------cc--cceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------c
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERS--------LQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------F 161 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~--------~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~ 161 (283)
.+.++++|+.|.|||||+ .++...+... .+ |..+......+.-+|..+.+.+.||||--.. .
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 589999999999999999 8776644421 11 3333333334444678899999999983211 1
Q ss_pred ------------------cchhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 162 ------------------DHVPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 162 ------------------~~~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
.+.+.-+. +.++.++....+.. .+..+. +..+++......+|-|..|+|. +..+
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~---lT~~ 174 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADT---LTKD 174 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeecccc---CCHH
Confidence 11111222 56777777775532 122221 1223333334445678889997 5555
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 222 LQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
........+.+-...+++.+|.-..-
T Consensus 175 El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred HHHHHHHHHHHHHHHcCcceecCCCC
Confidence 55555777777788888887764433
No 349
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.03 E-value=1e-05 Score=71.16 Aligned_cols=149 Identities=11% Similarity=0.180 Sum_probs=77.4
Q ss_pred ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhc-cc-CCCCcc---cc-cccccCCCCCCCCCC
Q 023335 1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVC-SI-GKQPAV---RY-QKLTRRSSSESSPAP 74 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~-g~~~~~---~~-~~~~~~~~~~~~p~p 74 (283)
|+|+++|+.+++.+++..+..+|.|..+..+...+.+.+.. .+.+++ +- .-.... .+ ........+ .-+
T Consensus 8 m~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~~--kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~---vi~ 82 (276)
T TIGR03596 8 MAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGN--KPRLIVLNKADLADPAVTKQWLKYFEEKGIK---ALA 82 (276)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHCC--CCEEEEEEccccCCHHHHHHHHHHHHHcCCe---EEE
Confidence 89999999999999999999999998877777655444421 122222 11 111000 00 000000000 000
Q ss_pred ccccc--ccccc----ccccCCC----CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEEC
Q 023335 75 DTMEA--GLVEL----SRTFSSG----YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQ 143 (283)
Q Consensus 75 ~~~~~--g~~~~----~~~~~~~----~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~ 143 (283)
..+.. |.... ....... .........++++++|.+|||||||+ ++.+.......+..|.+.....+.++
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~ 162 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS 162 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC
Confidence 00000 10000 0000000 00011234689999999999999999 99887654222222333333344443
Q ss_pred CeEEEEEEEeCCCC
Q 023335 144 GARIAFSIWDVGGD 157 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~ 157 (283)
. .+.++||||.
T Consensus 163 ~---~~~l~DtPG~ 173 (276)
T TIGR03596 163 D---GLELLDTPGI 173 (276)
T ss_pred C---CEEEEECCCc
Confidence 3 3689999997
No 350
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.01 E-value=1.4e-05 Score=68.42 Aligned_cols=100 Identities=14% Similarity=0.105 Sum_probs=55.8
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+.+.|.+|.|--... -....-+|.+++|.-..-.+..+-++.=+-++ .-|+|.||+|+ +. ....
T Consensus 122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~----~g--A~~~ 185 (266)
T PF03308_consen 122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADR----PG--ADRT 185 (266)
T ss_dssp -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SH----HH--HHHH
T ss_pred CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCCh----HH--HHHH
Confidence 446677777632211 11235689999998776655554443222222 23899999994 11 1112
Q ss_pred HHHHHHHHHH-------cCCcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 227 ATQARAYAKA-------MKATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 227 ~~~~~~~~~~-------~~~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
..+.+....- +..+.+.+||.++.||+++++.|.+.
T Consensus 186 ~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 186 VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 2222222221 12478899999999999999998864
No 351
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.00 E-value=1.6e-05 Score=70.31 Aligned_cols=151 Identities=13% Similarity=0.185 Sum_probs=78.1
Q ss_pred ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCC-CCcccccc----cccCCCCCCCCCCc
Q 023335 1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGK-QPAVRYQK----LTRRSSSESSPAPD 75 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~-~~~~~~~~----~~~~~~~~~~p~p~ 75 (283)
|+|+++|+.+++.+++..+..+|.|..+..+...+.+.+.... .+++.+-.. ........ ......+ .-+.
T Consensus 11 m~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~~kp-~iiVlNK~DL~~~~~~~~~~~~~~~~~~~---vi~v 86 (287)
T PRK09563 11 MAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIGNKP-RLLILNKSDLADPEVTKKWIEYFEEQGIK---ALAI 86 (287)
T ss_pred HHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhCCCC-EEEEEEchhcCCHHHHHHHHHHHHHcCCe---EEEE
Confidence 8999999999999999999999999888877765544443111 122211111 10000000 0000000 0000
Q ss_pred cccc--ccccccc----ccCC----CCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECC
Q 023335 76 TMEA--GLVELSR----TFSS----GYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQG 144 (283)
Q Consensus 76 ~~~~--g~~~~~~----~~~~----~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~ 144 (283)
.+.. |...... .... ..........++++++|.+|||||||+ ++.+.......+..|.+.....+.+++
T Consensus 87 Sa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~ 166 (287)
T PRK09563 87 NAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGK 166 (287)
T ss_pred ECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCC
Confidence 0000 0000000 0000 000111234689999999999999999 998877542222233333333444443
Q ss_pred eEEEEEEEeCCCCC
Q 023335 145 ARIAFSIWDVGGDS 158 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~ 158 (283)
.+.++||||--
T Consensus 167 ---~~~l~DtPGi~ 177 (287)
T PRK09563 167 ---GLELLDTPGIL 177 (287)
T ss_pred ---cEEEEECCCcC
Confidence 36789999964
No 352
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.98 E-value=6.9e-05 Score=65.29 Aligned_cols=104 Identities=14% Similarity=0.031 Sum_probs=58.3
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc-
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT- 225 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~- 225 (283)
+.+.|.+|.|--+... ....-+|.+++|.=..-.+..+-++.=+-++ --|+|.||.|. .......
T Consensus 144 ~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-------aDi~vINKaD~----~~A~~a~r 209 (323)
T COG1703 144 YDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEI-------ADIIVINKADR----KGAEKAAR 209 (323)
T ss_pred CCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhh-------hheeeEeccCh----hhHHHHHH
Confidence 4567778876433211 1224678888887554444444443222121 23899999994 2111100
Q ss_pred hHHHHHHHHH----H--cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 226 IATQARAYAK----A--MKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 226 ~~~~~~~~~~----~--~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
....+..+.. . +..+.+.+||.+|+|++++++.+.+..-
T Consensus 210 ~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 210 ELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 0111111111 1 2346899999999999999999987653
No 353
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.93 E-value=3.3e-05 Score=68.14 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=61.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC---------------CeEEEEEEEeCCCCC---
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ---------------GARIAFSIWDVGGDS--- 158 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~---------------~~~~~l~i~Dt~G~~--- 158 (283)
..+|+-|+|.||||||||. .+.+.... ..+|...++.....+.+. .....++++|++|.-
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGA 98 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGA 98 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCc
Confidence 4789999999999999999 88888776 888865555554455443 224678999999754
Q ss_pred -Ccccchhhh---cccCcEEEEEEECC
Q 023335 159 -RSFDHVPIA---CKDAVAILFMFDLT 181 (283)
Q Consensus 159 -~~~~~~~~~---~~~ad~iilv~D~~ 181 (283)
....+...| ++.+|+++-|+++.
T Consensus 99 s~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 99 SAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred ccCcCchHHHHHhhhhccceeEEEEec
Confidence 345555555 47899999998764
No 354
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.92 E-value=4.7e-05 Score=66.93 Aligned_cols=90 Identities=17% Similarity=0.067 Sum_probs=58.9
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
....+..+|++++|+|+.++.+..+ .++.++. .+.|.|+|.||+|| .+. ... +...++.+..+..++.
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL---~~~---~~~-~~~~~~~~~~~~~vi~ 82 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADL---ADP---AVT-KQWLKYFEEKGIKALA 82 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEcccc---CCH---HHH-HHHHHHHHHcCCeEEE
Confidence 4456789999999999977644322 1122221 25677899999996 221 111 1112222334667899
Q ss_pred EcCCCCcCHHHHHHHHHHHHhC
Q 023335 244 SSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+||+++.|++++.+.+.+.+.+
T Consensus 83 iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 83 INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988877644
No 355
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.89 E-value=2.2e-05 Score=70.51 Aligned_cols=58 Identities=12% Similarity=0.280 Sum_probs=42.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
...+++.|+|-||||||||| ++++.......+..|.+.....+.++.. +.++||||--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence 44688999999999999999 9998887633333355544455555543 7789999953
No 356
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=5.2e-05 Score=67.62 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=69.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc----cccccceeeeeEEEEE------ECCe------------------------
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINKTLM------VQGA------------------------ 145 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~----~~~~t~~~~~~~~~~~------~~~~------------------------ 145 (283)
.-|+++|.-..|||||| -++...|. ...||+ ++....+. ++|.
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 35899999999999999 88888776 233333 11111110 1110
Q ss_pred ---------EEEEEEEeCCCCCC-----------cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce
Q 023335 146 ---------RIAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP 205 (283)
Q Consensus 146 ---------~~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ 205 (283)
--.+.|.||+|.-. |.....-|..++|.||++||....+--.+....+..++.+. ..+
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E--dki 214 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE--DKI 214 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc--cee
Confidence 02378899998422 33444557789999999999876654444455555555432 233
Q ss_pred EEEeecCCC
Q 023335 206 ILIGTKFDD 214 (283)
Q Consensus 206 ilvgnK~DL 214 (283)
=||.||.|.
T Consensus 215 RVVLNKADq 223 (532)
T KOG1954|consen 215 RVVLNKADQ 223 (532)
T ss_pred EEEeccccc
Confidence 489999994
No 357
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.83 E-value=6e-05 Score=66.05 Aligned_cols=96 Identities=15% Similarity=0.123 Sum_probs=56.4
Q ss_pred EEEEEEEeCCCCCCcccchh----h---h-----cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVP----I---A-----CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~----~---~-----~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
.+.+.+.||+|........- . . -...|.+++|.|.+.. .+.+. +.....+.. .+--+|.||.|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~--~~~g~IlTKlD 228 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV--GLTGIILTKLD 228 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC--CCCEEEEEccC
Confidence 36788999999765322111 1 1 1238899999999743 22222 222222211 23359999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
. ..+ .-.+..++...+.|+.+++ +|++++++-.
T Consensus 229 e------~~~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 229 G------TAK---GGIILSIAYELKLPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred C------CCC---ccHHHHHHHHHCcCEEEEe--CCCChHhCcc
Confidence 4 111 3345555666789988887 7888877643
No 358
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.82 E-value=0.0001 Score=76.92 Aligned_cols=108 Identities=17% Similarity=0.113 Sum_probs=62.9
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc-cc----cccceee-eeEEEEEECCeEEEEEEEeCCCCC--------Ccccchhhh
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE-RS----LQMAGLN-LINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIA 167 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~-~~----~~t~~~~-~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~ 167 (283)
.+|||++|+||||+| +. +-.|. .. ..+.+.. ......-+.+. -.++||+|.- .....|..+
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHHHH
Confidence 679999999999999 55 44454 21 1111110 00111112222 3478999832 122334444
Q ss_pred c---------ccCcEEEEEEECCChh-----hH----HHHHHHHHHHHhHCCCCce-EEEeecCCC
Q 023335 168 C---------KDAVAILFMFDLTSRC-----TL----NSIVGWYSEARKWNQTAIP-ILIGTKFDD 214 (283)
Q Consensus 168 ~---------~~ad~iilv~D~~~~~-----s~----~~~~~~~~~i~~~~~~~~~-ilvgnK~DL 214 (283)
+ +..+++|+++|+.+-- .. ..++..++++.....-..| .||.||+|+
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dl 255 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADL 255 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchh
Confidence 3 3579999999986532 11 2345667777766554455 599999998
No 359
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.78 E-value=0.00011 Score=64.86 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=59.4
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
....+..+|++|+|+|+.++.+.++ .++.++. .+.+.++|.||+|| .+. .. .+...++.+..+..++.
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL---~~~---~~-~~~~~~~~~~~~~~vi~ 85 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDL---ADP---EV-TKKWIEYFEEQGIKALA 85 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhc---CCH---HH-HHHHHHHHHHcCCeEEE
Confidence 4456789999999999977644322 1222222 25677999999996 221 11 11222223344667889
Q ss_pred EcCCCCcCHHHHHHHHHHHHhC
Q 023335 244 SSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+||+++.|++++.+.+.+.+.+
T Consensus 86 vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 86 INAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred EECCCcccHHHHHHHHHHHHHH
Confidence 9999999999999988777643
No 360
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.77 E-value=0.00014 Score=61.98 Aligned_cols=84 Identities=17% Similarity=0.320 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----cc---chhhhcccC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FD---HVPIACKDA 171 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~---~~~~~~~~a 171 (283)
-||-++|.|.+|||||+ .+.+.... ..+..+........+.+++.+ +++.|.||.-+. +. ..-...+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 47889999999999999 88876655 555544444444555566654 677999985331 11 122245789
Q ss_pred cEEEEEEECCChhhH
Q 023335 172 VAILFMFDLTSRCTL 186 (283)
Q Consensus 172 d~iilv~D~~~~~s~ 186 (283)
+.+++|.|+..+-+-
T Consensus 138 nli~~vld~~kp~~h 152 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSH 152 (358)
T ss_pred cEEEEEeeccCcccH
Confidence 999999998765443
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.77 E-value=0.00019 Score=64.27 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCCCCcccc----hhhh--------cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecC
Q 023335 146 RIAFSIWDVGGDSRSFDH----VPIA--------CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKF 212 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~----~~~~--------~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~ 212 (283)
.+.+.+.||+|....... ...+ -...+..++|.|++... +.+.. +..+... .+--+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~----a~~f~~~~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ----AKAFHEAVGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH----HHHHHhhCCCCEEEEECC
Confidence 457889999997543221 1111 12467789999998532 22221 2222212 2336999999
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 213 DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|. ... .-.+...+...++|+.+++ +|++++++-
T Consensus 270 D~------t~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DG------TAK---GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CC------CCC---ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 93 111 2345555677799999988 788887763
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.77 E-value=3.7e-05 Score=63.63 Aligned_cols=52 Identities=13% Similarity=0.338 Sum_probs=34.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcc---------c-cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQ---------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~---------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
...++++|.+|||||||+ .+.+... . +..+ |.+.....+.++. .+.++||||
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP--GTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC--CeeeeeEEEecCC---CCEEEeCcC
Confidence 357999999999999999 9887542 1 2333 3333333444433 468899998
No 363
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00012 Score=70.65 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=79.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc------------cc---cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE------------QE---RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~------------~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
--+++++-.-.-|||||. .++... |. ++..+.|++.....+..-.+.+.++++|+||+-.|.+.
T Consensus 9 irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~se 88 (887)
T KOG0467|consen 9 IRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSE 88 (887)
T ss_pred eeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhh
Confidence 457889999999999999 886432 22 22235566666666666567788999999999999999
Q ss_pred hhhhcccCcEEEEEEECCChh---hHHHHH-HHHHHHHhHCCCCceEEEeecCC
Q 023335 164 VPIACKDAVAILFMFDLTSRC---TLNSIV-GWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~---s~~~~~-~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
.....+-+|++++.+|+...- +..-++ .|.+ ...+++|.||+|
T Consensus 89 vssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-------~~~~~lvinkid 135 (887)
T KOG0467|consen 89 VSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-------GLKPILVINKID 135 (887)
T ss_pred hhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-------cCceEEEEehhh
Confidence 999999999999999987643 222222 2433 557899999999
No 364
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.71 E-value=0.00016 Score=61.64 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC--ccc--ccc-c-cceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE--RSL-Q-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPI 166 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~--~~~-~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~ 166 (283)
-.-|.|+|.+++|||+|+ ++++. .|. ... + |.|+-.....+.. +....+.+.||+|...... ..-.
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccC-CCcceEEEEecCCcCccccCchhhhhHHH
Confidence 345779999999999999 99988 776 222 2 4455443332221 3446788999999654321 1122
Q ss_pred hccc--CcEEEEEEECCChh
Q 023335 167 ACKD--AVAILFMFDLTSRC 184 (283)
Q Consensus 167 ~~~~--ad~iilv~D~~~~~ 184 (283)
.+.. ++++|+..+.+..+
T Consensus 86 ~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 86 ALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHhCEEEEeccCcccH
Confidence 2333 78888877765443
No 365
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=4.1e-05 Score=66.61 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=71.4
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 227 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~ 227 (283)
.+.|.|++|++-.....-.-..-.|+.++....+....-....+.+..+.-. .-+.++++-||+|| ..++......
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~LkhiiilQNKiDl---i~e~~A~eq~ 201 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-KLKHIIILQNKIDL---IKESQALEQH 201 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-hhceEEEEechhhh---hhHHHHHHHH
Confidence 4678899998753222111112336777777665432221112222222211 12356789999998 4444334446
Q ss_pred HHHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 228 TQARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 228 ~~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+++++|.+.- +++++.+||.-+.||+-+.++|++.+...+
T Consensus 202 e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 202 EQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred HHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 6777777654 578999999999999999999999885543
No 366
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00048 Score=65.95 Aligned_cols=113 Identities=12% Similarity=0.197 Sum_probs=67.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeee---------------------------------------
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNL--------------------------------------- 135 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~--------------------------------------- 135 (283)
....||++.|+.+.||||++ .++..+.- ...+++..-.
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 34689999999999999999 88765433 2222221100
Q ss_pred ---eEEEEEECCeEE-----EEEEEeCCCCCC---cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc
Q 023335 136 ---INKTLMVQGARI-----AFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI 204 (283)
Q Consensus 136 ---~~~~~~~~~~~~-----~l~i~Dt~G~~~---~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~ 204 (283)
.--.+.++.... .+.+.|.||-+- ...-...++.++|++|||...-+.-+..+ ..++....+ .+|
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~---~Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE---EKP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc---cCC
Confidence 000011111111 245677787543 34445667899999999998877655444 334444333 244
Q ss_pred e-EEEeecCCC
Q 023335 205 P-ILIGTKFDD 214 (283)
Q Consensus 205 ~-ilvgnK~DL 214 (283)
- +|+-||+|.
T Consensus 263 niFIlnnkwDa 273 (749)
T KOG0448|consen 263 NIFILNNKWDA 273 (749)
T ss_pred cEEEEechhhh
Confidence 4 588999995
No 367
>PRK01889 GTPase RsgA; Reviewed
Probab=97.70 E-value=0.00026 Score=64.49 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=58.1
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
..++|.+++|+++...-....+..++..+... +.+|+||.||+|| .++ .....+....+ ..+.+.+.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~--~i~piIVLNK~DL---~~~--~~~~~~~~~~~--~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES--GAEPVIVLTKADL---CED--AEEKIAEVEAL--APGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc--CCCEEEEEEChhc---CCC--HHHHHHHHHHh--CCCCcEEEEECC
Confidence 57899999999997544444556666655543 4577999999997 322 11112222322 347789999999
Q ss_pred CCcCHHHHHHHHH
Q 023335 248 HNINVNKIFKFIM 260 (283)
Q Consensus 248 ~~~~v~~lf~~l~ 260 (283)
++.|++++..++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888874
No 368
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.65 E-value=0.00011 Score=58.64 Aligned_cols=53 Identities=13% Similarity=0.238 Sum_probs=35.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
...+++++|.+|||||||+ .+.+.... +..+.+..+.. .+.++ ..+.+.||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~--~~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQ--EVKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceE--EEEec---CCEEEEECCC
Confidence 3578999999999999999 88876532 33332222222 22332 2478899998
No 369
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.0023 Score=51.01 Aligned_cols=55 Identities=31% Similarity=0.534 Sum_probs=36.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVG 155 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~ 155 (283)
..+||.|-|.|||||||++ ++...--...+.--| +....+.-+|+.+-|.+.|+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG--f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGG--FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeee--EEeeeeecCCeEeeeEEEEcc
Confidence 3689999999999999999 876432222222222 334455566777777777776
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=97.63 E-value=0.00023 Score=64.15 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=55.6
Q ss_pred EEEEEEeCCCCCCccc-ch---hhh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFD-HV---PIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~---~~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~ 219 (283)
+.+.+.||+|...... +. ..+ ..+.|.++||.|.+.... . +..++.+.. -.+--+|.||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~---~~~a~~f~~~~~~~giIlTKlD~----- 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---A---VEQAREFNEAVGIDGVILTKVDA----- 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---H---HHHHHHHHhcCCCCEEEEeeecC-----
Confidence 4588999999764321 11 111 125788999999865421 1 112222221 1233699999994
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
... .-.+..++...+.|+.+++ +|++++++..
T Consensus 292 -~~~---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 -DAK---GGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred -CCC---ccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 111 2334455556788988887 7899988753
No 371
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=2.9e-05 Score=65.99 Aligned_cols=171 Identities=16% Similarity=0.261 Sum_probs=102.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcc----c
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACK----D 170 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~----~ 170 (283)
...+..|++.|..+ ||++| ++....-....+|...+|....-.-.+ .+--.++|+.+|......+..--++ .
T Consensus 42 ~~~E~~I~~~Gn~~--~tt~I~~~FdR~e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 42 EKFEFFIGSKGNGG--KTTIILRCFDRDEPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred ccceeEEEEecCCc--eeEeehhhcCcccCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 34577888998875 48888 776554444444555444322111111 2333688999987654333222111 2
Q ss_pred CcEEEEEEECCChhhH-HHHHHHHHHH----------------------HhH---------------CCCC-ceEEEeec
Q 023335 171 AVAILFMFDLTSRCTL-NSIVGWYSEA----------------------RKW---------------NQTA-IPILIGTK 211 (283)
Q Consensus 171 ad~iilv~D~~~~~s~-~~~~~~~~~i----------------------~~~---------------~~~~-~~ilvgnK 211 (283)
.-.+|++.|+++++.| ..+...++.+ +.. ++-. |++|||.|
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsK 199 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSK 199 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccc
Confidence 2367899999987543 1112111111 111 1112 33699999
Q ss_pred CCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335 212 FDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 212 ~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 269 (283)
.|.+..+.+..++..-.-++.+|..+|......|++...=.+.+-+.+.+..+..+..
T Consensus 200 YDvFq~FesekRkH~C~~LRf~Ah~yGaaLlmfSskMe~l~K~~r~~i~HlaFG~~~~ 257 (363)
T KOG3929|consen 200 YDVFQDFESEKRKHICKTLRFVAHYYGAALLMFSSKMEALLKKIRGVINHLAFGIDKS 257 (363)
T ss_pred hhhhccccHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHhhHHHhhcCCcCC
Confidence 9988777777777777888888999999888888886555555556666666666544
No 372
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=97.52 E-value=0.0012 Score=59.21 Aligned_cols=30 Identities=17% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCcc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQ 124 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~ 124 (283)
..+..+.+|+++|.-.+|||||+ -+..++.
T Consensus 128 ~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeL 158 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKSTLLGVLTHGEL 158 (641)
T ss_pred CccceeEEEEEEecccCCcceeEeeeeeccc
Confidence 44567899999999999999999 8876543
No 373
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.50 E-value=0.00099 Score=61.80 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=49.2
Q ss_pred EEEEEEEeCCCCCCccc-chh---hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~-~~~---~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
.+.+.|+||+|...... +.. .+ ..+.+-++||.|.+-...- ....+.+.+. -.+--+|.||.|-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~--~~~~g~IlTKlD~----- 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDS--VDVGSVIITKLDG----- 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhc--cCCcEEEEECccC-----
Confidence 46788999999765322 111 11 2356789999998754221 1112222211 1233699999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
..+ --.+...+...+.|+.+++. |+++++
T Consensus 252 -~ar---gG~aLs~~~~t~~PI~fig~--Ge~v~D 280 (429)
T TIGR01425 252 -HAK---GGGALSAVAATKSPIIFIGT--GEHIDD 280 (429)
T ss_pred -CCC---ccHHhhhHHHHCCCeEEEcC--CCChhh
Confidence 111 22244445556766655543 344444
No 374
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.48 E-value=0.0011 Score=58.24 Aligned_cols=93 Identities=11% Similarity=0.104 Sum_probs=64.9
Q ss_pred cchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc
Q 023335 162 DHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT 240 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
.+.+--..+.|-.++|+++.+++ +..-+.+++-.+. .....||||.||+|| +++..... ++.......+|..
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae--~~gi~pvIvlnK~DL---~~~~~~~~--~~~~~~y~~~gy~ 143 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE--AGGIEPVIVLNKIDL---LDDEEAAV--KELLREYEDIGYP 143 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH--HcCCcEEEEEEcccc---CcchHHHH--HHHHHHHHhCCee
Confidence 34444445678888888888876 4444555554433 345678999999998 33322211 5566777888999
Q ss_pred EEEEcCCCCcCHHHHHHHHHH
Q 023335 241 LFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 241 ~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
.+.+|++++++++++.+.+..
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEEecCcCcccHHHHHHHhcC
Confidence 999999999999998887653
No 375
>PRK13695 putative NTPase; Provisional
Probab=97.46 E-value=0.003 Score=51.37 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
+||++.|.+|+|||||+ .+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999 754
No 376
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.45 E-value=0.00084 Score=61.96 Aligned_cols=118 Identities=20% Similarity=0.253 Sum_probs=75.4
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhh----------HHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT----------LNSIVGWYSEARKW--NQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s----------~~~~~~~~~~i~~~--~~~~~~ilvgnK~D 213 (283)
...+.++|++|+...+.-|..++.+++++|||+++++-+- +.+.....+.+-.. ..+.++||+.||.|
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D 314 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKID 314 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HH
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHH
Confidence 3557889999999888899999999999999999875321 33333444444432 23566789999999
Q ss_pred CCCC-----------CCCCccc--chHHHHHHHHHHc--------C--C--cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 214 DFVR-----------LPPDLQW--TIATQARAYAKAM--------K--A--TLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 214 L~~~-----------l~~~~~~--~~~~~~~~~~~~~--------~--~--~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
++.. +++-... ...+.+.++.+.. . - .+..++|.+..++..+|+.+.+.|
T Consensus 315 ~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 315 LFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 6321 1111111 1234444444321 1 2 244699999999999999887653
No 377
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.39 E-value=0.0007 Score=44.20 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=31.4
Q ss_pred cCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 170 DAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 170 ~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
=.+++++++|++..+ |.++-..++++++..-++.|.++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 357899999999765 45666688999999988888999999998
No 378
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.37 E-value=0.00086 Score=52.60 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=60.3
Q ss_pred EEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh
Q 023335 105 LLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR 183 (283)
Q Consensus 105 vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~ 183 (283)
.-|.+|+|||++. .+...-......+.-++... ......+.+.++|+++.. .......+..+|.++++.+.+ .
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-P 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-h
Confidence 4577899999988 65322111111111111110 001112668899999743 334456789999999999875 4
Q ss_pred hhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 184 CTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 184 ~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
.++..+...++.+..........+|.|+++
T Consensus 79 ~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~ 108 (139)
T cd02038 79 TSITDAYALIKKLAKQLRVLNFRVVVNRAE 108 (139)
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 455555555555554443445569999998
No 379
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0013 Score=58.33 Aligned_cols=148 Identities=11% Similarity=0.115 Sum_probs=92.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhc-------C---ccc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVG-------N---EQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~-------~---~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
+....+|--||.-.-|||||- .+.. . +|. +.-| ..|+.+....+.+....-.+.-.|+||+..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY 130 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY 130 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence 445788999999999999998 6642 1 111 1111 3467777777777766666777899999887
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC-cccchHHHHHHHHHHcCC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKA 239 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-~~~~~~~~~~~~~~~~~~ 239 (283)
....-.-..+.|+.|||+..+|..--+. ++.+-..++. .-.-+++..||.|+ .++. ..+.++-+++++...+|+
T Consensus 131 IKNMItGaaqMDGaILVVaatDG~MPQT-rEHlLLArQV-GV~~ivvfiNKvD~---V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 131 IKNMITGAAQMDGAILVVAATDGPMPQT-REHLLLARQV-GVKHIVVFINKVDL---VDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHhhcCccccCceEEEEEcCCCCCcch-HHHHHHHHHc-CCceEEEEEecccc---cCCHHHHHHHHHHHHHHHHHcCC
Confidence 5433333457799999999998532111 2222222221 12233577999997 4232 233347788999999874
Q ss_pred -----cEEEEc---CCCC
Q 023335 240 -----TLFFSS---ATHN 249 (283)
Q Consensus 240 -----~~~e~S---a~~~ 249 (283)
+.+.-| |..|
T Consensus 206 ~Gd~~PvI~GSAL~ALeg 223 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEG 223 (449)
T ss_pred CCCCCCeeecchhhhhcC
Confidence 677644 4555
No 380
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.34 E-value=0.00071 Score=54.34 Aligned_cols=64 Identities=8% Similarity=-0.101 Sum_probs=37.1
Q ss_pred EEEEEEEeCCCCCCcccchhh--------hcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPI--------ACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~--------~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
.....+.|++|...-..+... ..-..|.++.++|..+-... .+...+..++.. --+||.||+||
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-----ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-----ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-----CCEEEEecccC
Confidence 345678899997643333222 22367899999997543321 112233344432 23789999994
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00036 Score=63.30 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=32.7
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc--ccccc---ce--eeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQM---AG--LNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t---~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
++|+|.+|||||||| .++..... ...+. .| .+.....+.+++.. .++||||-..
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 799999999999999 98865433 22221 01 11222333343222 5789999654
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.32 E-value=0.00028 Score=64.01 Aligned_cols=56 Identities=13% Similarity=0.158 Sum_probs=34.1
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccc--ccccc---cee--eeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQE--RSLQM---AGL--NLINKTLMVQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~--~~~~t---~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 161 (283)
++++|.+|||||||| ++++.... ...+. .|- +....-+.+++.. .++||||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 789999999999999 99876533 22221 111 1122233343222 479999977653
No 383
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.0016 Score=61.32 Aligned_cols=139 Identities=14% Similarity=0.216 Sum_probs=75.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccc-cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+..+-|+|+|++|+|||||| .++..-...... ..| -...+.|+.-.+.+.+++. ....+.. ..+-||.++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G-----PiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVl 138 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG-----PITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVL 138 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC-----ceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeE
Confidence 34677889999999999999 776532222111 111 1122457778889999883 2222222 346799999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHH--HHHHHHc-CCcEEEEcCCC
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA--RAYAKAM-KATLFFSSATH 248 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~--~~~~~~~-~~~~~e~Sa~~ 248 (283)
|.+|.+-.--.+. -.+++-+..+. -..++-|+|..||+... ...+.+...+ +-|.+-+ |+.+|..|-..
T Consensus 139 LlIdgnfGfEMET-mEFLnil~~HG-mPrvlgV~ThlDlfk~~--stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 139 LLIDGNFGFEMET-MEFLNILISHG-MPRVLGVVTHLDLFKNP--STLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEeccccCceehH-HHHHHHHhhcC-CCceEEEEeecccccCh--HHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9999864321111 12334333322 22224689999984211 1111111111 1222222 67888888653
No 384
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.26 E-value=0.0014 Score=61.18 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCCCcccc-----hh-hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH-----VP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLP 219 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~-----~~-~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~ 219 (283)
..+.|+||+|....... .. ..+-.+|.+++|+|.+... +. ++.++.+....++ -+|.||.|-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a---v~~a~~F~~~l~i~gvIlTKlD~----- 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA---KNQAKAFHEAVGIGGIIITKLDG----- 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH---HHHHHHHHhcCCCCEEEEecccC-----
Confidence 36789999997654211 11 1134678999999987642 22 2223333322233 488999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
.. .--.+...+...+.|+.+++. |+++++
T Consensus 245 -~a---~~G~~ls~~~~~~~Pi~fig~--Ge~v~D 273 (437)
T PRK00771 245 -TA---KGGGALSAVAETGAPIKFIGT--GEKIDD 273 (437)
T ss_pred -CC---cccHHHHHHHHHCcCEEEEec--CCCccc
Confidence 11 134456666777888777654 444443
No 385
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0026 Score=58.11 Aligned_cols=92 Identities=22% Similarity=0.130 Sum_probs=49.1
Q ss_pred EEEEEEEeCCCCCCcccchhh---hc---ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCC-Cc-e-EEEeecCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPI---AC---KDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQT-AI-P-ILIGTKFDDF 215 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~---~~---~~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~-~~-~-ilvgnK~DL~ 215 (283)
...+.++||+|.......... .+ ....-.+||.+.+.. +...++..-+......... .+ + =+|.||.|-
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE- 293 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE- 293 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEecccc-
Confidence 346788999997654322111 12 233456889998764 3344332222222111111 12 2 388899993
Q ss_pred CCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 216 VRLPPDLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
. ...-.+..++...+.++.+++.
T Consensus 294 -----t---~~~G~~l~~~~~~~lPi~yvt~ 316 (374)
T PRK14722 294 -----A---SNLGGVLDTVIRYKLPVHYVST 316 (374)
T ss_pred -----C---CCccHHHHHHHHHCcCeEEEec
Confidence 1 1244566677777888776654
No 386
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.22 E-value=0.0003 Score=56.45 Aligned_cols=56 Identities=18% Similarity=0.259 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cccc-c--ce--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
-++++|.+|||||||+ .++...-. .... . .| .......+.+++.. .+.||||-..+
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred EEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 5889999999999999 88876322 1111 1 11 11122344443322 56899996553
No 387
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.17 E-value=0.00065 Score=58.67 Aligned_cols=55 Identities=16% Similarity=0.207 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--ccccc-c--e--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQM-A--G--LNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t-~--~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
.++++|.+|||||||+ ++.+.... ...+. . | .+.....+.+++. .++||||-..+
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~~----~liDtPG~~~~ 184 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHGG----LIADTPGFNEF 184 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCCc----EEEeCCCcccc
Confidence 6889999999999999 88865432 12211 0 1 1112222333331 57999997654
No 388
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0037 Score=59.28 Aligned_cols=91 Identities=10% Similarity=0.069 Sum_probs=50.5
Q ss_pred EEEEEEEeCCCCCCcccchhh---hcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPI---ACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~---~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
.+.+.|+||+|.......... .+. .....++|++.+. +..++...++.+.. ..+--+|.||.|.
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~---~~~~gvILTKlDE------ 496 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH---AKPQGVVLTKLDE------ 496 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh---hCCeEEEEecCcC------
Confidence 467889999996543211100 011 1234567777664 34444444444332 2344699999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
. .....+..+....+.++.+++. |++|
T Consensus 497 t---~~lG~aLsv~~~~~LPI~yvt~--GQ~V 523 (559)
T PRK12727 497 T---GRFGSALSVVVDHQMPITWVTD--GQRV 523 (559)
T ss_pred c---cchhHHHHHHHHhCCCEEEEeC--CCCc
Confidence 1 1235566667777888777654 4444
No 389
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.14 E-value=0.0015 Score=53.03 Aligned_cols=84 Identities=15% Similarity=0.057 Sum_probs=44.8
Q ss_pred EEEEEEEeCCCCCCccc-c---hhhh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFD-H---VPIA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~-~---~~~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
...+.+.|++|...+.. . ...+ ....+.+++|+|..... +...+...+.+... ..-+|.||.|..
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~~--~~~viltk~D~~---- 152 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEALG--ITGVILTKLDGD---- 152 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhCC--CCEEEEECCcCC----
Confidence 34577899999743211 1 1111 13489999999986433 22234444433322 335777999941
Q ss_pred CCcccchHHHHHHHHHHcCCcEEE
Q 023335 220 PDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
. ....+...+...++++..
T Consensus 153 ~-----~~g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 153 A-----RGGAALSIRAVTGKPIKF 171 (173)
T ss_pred C-----CcchhhhhHHHHCcCeEe
Confidence 1 122233366666666543
No 390
>PRK13796 GTPase YqeH; Provisional
Probab=97.13 E-value=0.00067 Score=62.05 Aligned_cols=53 Identities=13% Similarity=0.286 Sum_probs=34.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcc-------ccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQ-------ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
.++.++|.+|||||||+ +++.... .+..| |.+.....+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~p--GTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFP--GTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCC--CccceeEEEEcCCC---cEEEECCCcc
Confidence 47999999999999999 9985431 13333 22222334444332 3689999964
No 391
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.13 E-value=0.00085 Score=61.27 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=35.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCcc------c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQ------E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
.+++++|.+|||||||+ ++++... . +..|.++.+ ...+.+++. +.++||||-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCCC---CEEEECCCCCC
Confidence 48999999999999999 9887432 2 344432222 223344221 46899999654
No 392
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.10 E-value=0.0019 Score=47.73 Aligned_cols=81 Identities=14% Similarity=0.112 Sum_probs=49.4
Q ss_pred EEEEc-CCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 103 ISLLG-DCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 103 I~vlG-~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
|++.| ..|+||||+. .+...--....++.-.+ .+. .+.+.++|+++... ......+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d-------~d~-~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLID-------LDP-QYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEe-------CCC-CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccC
Confidence 56667 5689999998 65432111222222221 121 16688899998653 2333677889999999976
Q ss_pred CChhhHHHHHHHHH
Q 023335 181 TSRCTLNSIVGWYS 194 (283)
Q Consensus 181 ~~~~s~~~~~~~~~ 194 (283)
+ ..++..+..+++
T Consensus 72 ~-~~s~~~~~~~~~ 84 (104)
T cd02042 72 S-PLDLDGLEKLLE 84 (104)
T ss_pred C-HHHHHHHHHHHH
Confidence 4 556666666655
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.07 E-value=0.0016 Score=54.33 Aligned_cols=91 Identities=15% Similarity=0.164 Sum_probs=50.9
Q ss_pred EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
+.+.++||+|....... ...++ ...+-+++|.|.+... ..+.+...++. -.+-=+|.||.|-
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~------~~~~~lIlTKlDe----- 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEA------FGIDGLILTKLDE----- 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHH------SSTCEEEEESTTS-----
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhc------ccCceEEEEeecC-----
Confidence 55788999997654321 11121 2567899999987653 23322222221 1123588999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
. ...-.+..++...+.++-.+|. |++|++
T Consensus 153 -t---~~~G~~l~~~~~~~~Pi~~it~--Gq~V~D 181 (196)
T PF00448_consen 153 -T---ARLGALLSLAYESGLPISYITT--GQRVDD 181 (196)
T ss_dssp -S---STTHHHHHHHHHHTSEEEEEES--SSSTTG
T ss_pred -C---CCcccceeHHHHhCCCeEEEEC--CCChhc
Confidence 1 1134566677778888777653 444433
No 394
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.00 E-value=0.0013 Score=55.35 Aligned_cols=67 Identities=24% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCCceEEEeecCCCCCC----------CCCC-cccchHHHHHHHHHHc----C-----Cc-EEEEcCCCCcCHHHHHHHH
Q 023335 201 QTAIPILIGTKFDDFVR----------LPPD-LQWTIATQARAYAKAM----K-----AT-LFFSSATHNINVNKIFKFI 259 (283)
Q Consensus 201 ~~~~~ilvgnK~DL~~~----------l~~~-~~~~~~~~~~~~~~~~----~-----~~-~~e~Sa~~~~~v~~lf~~l 259 (283)
.+..+|+..||.||.+. +|+- ......+.+++|.-++ + +. -.++.|.+-+||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 35677899999997321 1111 1112244455554432 2 11 2348888999999999998
Q ss_pred HHHHhCCc
Q 023335 260 MAKLFNLP 267 (283)
Q Consensus 260 ~~~i~~~~ 267 (283)
-..+++..
T Consensus 345 kDtiLq~~ 352 (359)
T KOG0085|consen 345 KDTILQLN 352 (359)
T ss_pred HHHHHHhh
Confidence 88877643
No 395
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.97 E-value=0.00094 Score=62.11 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
.+.|-+||-|||||||+| .+++.+-.+-..|.|-+-.-.++.+.. .+.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 578889999999999999 999999886666666655445555543 35678999954
No 396
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.96 E-value=0.011 Score=54.11 Aligned_cols=151 Identities=14% Similarity=0.136 Sum_probs=80.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccce---eee---------------eEEEEEE--C----------CeEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAG---LNL---------------INKTLMV--Q----------GARI 147 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~---~~~---------------~~~~~~~--~----------~~~~ 147 (283)
.-.|+++|+.||||||-+ ++...-.. .....++ .|. ....+.+ + -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 456889999999999988 76443321 1111111 110 0000110 0 1245
Q ss_pred EEEEEeCCCCCCcccch----hhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCC
Q 023335 148 AFSIWDVGGDSRSFDHV----PIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPP 220 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~----~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~ 220 (283)
.+.+.||.|...+.... ..++. ...-+.||++++.. .+++...++.+.. .++ =++.||.|-
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~----~~i~~~I~TKlDE------ 350 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL----FPIDGLIFTKLDE------ 350 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc----CCcceeEEEcccc------
Confidence 68899999987765432 22322 23456677777654 3444444444322 222 489999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH-HH----HHHHHHHHhCCc
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINVN-KI----FKFIMAKLFNLP 267 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~-~l----f~~l~~~i~~~~ 267 (283)
....-....+..+.+.+.-.++ +|++|. ++ -+++++.++...
T Consensus 351 ---T~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g~~ 397 (407)
T COG1419 351 ---TTSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILGTF 397 (407)
T ss_pred ---cCchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhccc
Confidence 1224455566666666655543 344442 22 345666665543
No 397
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.95 E-value=0.0033 Score=58.58 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=53.7
Q ss_pred EEEEEEEeCCCCCCccc-chhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFD-HVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL 218 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~-~~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l 218 (283)
.+.+.|.||+|...... +... ..-..+.++||+|.+.. ++...+...+... ..+ =+|.||.|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~---v~i~giIlTKlD~---- 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNER---LGLTGVVLTKLDG---- 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhh---CCCCEEEEeCccC----
Confidence 35688999999654321 1111 12357888999998743 3333344443322 223 488999993
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
.. ..-.+..++...++|+.+++. |++++++
T Consensus 252 --~~---~~G~~lsi~~~~~~PI~fi~~--Ge~i~dl 281 (428)
T TIGR00959 252 --DA---RGGAALSVRSVTGKPIKFIGV--GEKIDDL 281 (428)
T ss_pred --cc---cccHHHHHHHHHCcCEEEEeC--CCChhhC
Confidence 11 123366777778888877654 4444443
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.0028 Score=59.02 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=51.0
Q ss_pred EEEEEEEeCCCCCCccc-chh---hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFD-HVP---IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRL 218 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~-~~~---~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l 218 (283)
.+.+.|.||+|...... +.. .+ .-..+.+++|.|.+.. ++..+....+.. ...+ -+|.||.|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~---~~~i~giIlTKlD~---- 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE---ALGLTGVILTKLDG---- 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh---hCCCCEEEEeCccC----
Confidence 35688999999654321 111 11 1256778999997643 233333333332 2223 478899993
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
..+ .-.+...+...++|+.+++. |+++++
T Consensus 253 --~~r---gG~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 253 --DAR---GGAALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred --ccc---ccHHHHHHHHHCcCEEEEeC--CCcccc
Confidence 111 23366667777888777654 444443
No 399
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.91 E-value=0.00098 Score=58.93 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=34.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccc-c--ce--eeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQ-M--AG--LNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~-t--~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
-.++++|.+|||||||+ .+++.... ...+ + .| .+.....+...+. ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 46899999999999999 88775433 1111 1 11 1122223333322 247999998764
No 400
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0039 Score=57.16 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=48.7
Q ss_pred EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
+.+.|.||+|....... ...++ ...+.++||.|.+-.. +++..+++.+ ..-.+-=+|.||.|-
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F---~~~~idglI~TKLDE------ 389 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNF---KDIHIDGIVFTKFDE------ 389 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHh---cCCCCCEEEEEcccC------
Confidence 56889999997553221 11222 2346788998875332 2333333333 322222499999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
.. ..-.+..++...++|+..++.
T Consensus 390 T~---k~G~iLni~~~~~lPIsyit~ 412 (436)
T PRK11889 390 TA---SSGELLKIPAVSSAPIVLMTD 412 (436)
T ss_pred CC---CccHHHHHHHHHCcCEEEEeC
Confidence 11 134456667777888776643
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.007 Score=56.17 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=56.0
Q ss_pred EEEEEEeCCCCCCcccc----hhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH----VPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~----~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
..+.+.||+|....... ...+. ....-.+||.|.+... +.+..++.. +..-.+-=+|.||.|-
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~--~~~~~~~~~---f~~~~~~~~I~TKlDE------ 338 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSG--DTLDEVISA---YQGHGIHGCIITKVDE------ 338 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCH--HHHHHHHHH---hcCCCCCEEEEEeeeC------
Confidence 35678999997653221 11111 2234678899987432 223333322 2222222499999993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhC
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFN 265 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l----f~~l~~~i~~ 265 (283)
. ...-.+..++...+.++.+++. |++| +++ -+.+++.++.
T Consensus 339 t---~~~G~~l~~~~~~~lPi~yvt~--Gq~VP~Dl~~a~~~~lv~~ll~ 383 (420)
T PRK14721 339 A---ASLGIALDAVIRRKLVLHYVTN--GQKVPEDLHEANSRYLLHRIFK 383 (420)
T ss_pred C---CCccHHHHHHHHhCCCEEEEEC--CCCchhhhhhCCHHHHHHHHhc
Confidence 1 1245566777778888777654 4555 333 2345555554
No 402
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.84 E-value=0.0095 Score=48.20 Aligned_cols=84 Identities=8% Similarity=-0.028 Sum_probs=51.1
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 227 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~ 227 (283)
.+.++|+++.... .....+..+|.+|++.+.+ ..++..+..+++.++... .....+|.|+.|- . .....
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~-~~~~~iv~N~~~~----~---~~~~~ 132 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG-IKVVGVIVNRVRP----D---MVEGG 132 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC-CceEEEEEeCCcc----c---ccchh
Confidence 5888999976432 3445578999999998765 345666666666665522 2233589999983 1 11112
Q ss_pred HHHHHHHHHcCCcEE
Q 023335 228 TQARAYAKAMKATLF 242 (283)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (283)
+....+.+.++.+++
T Consensus 133 ~~~~~~~~~~~~~v~ 147 (179)
T cd02036 133 DMVEDIEEILGVPLL 147 (179)
T ss_pred hHHHHHHHHhCCCEE
Confidence 223455555676654
No 403
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.81 E-value=0.0028 Score=65.24 Aligned_cols=109 Identities=17% Similarity=0.085 Sum_probs=59.9
Q ss_pred EEEEcCCCCcHHHhHhhhcCccc--cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCC--------cccchhhh--
Q 023335 103 ISLLGDCQIGKTSFVKYVGNEQE--RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSR--------SFDHVPIA-- 167 (283)
Q Consensus 103 I~vlG~~~vGKSSLi~~~~~~~~--~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~~-- 167 (283)
-+|||++|+||||++.-.+-+|. +... ..+.......--+.+ .-.++||+|... ....|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 57999999999999944555444 1111 111111111111122 234679988321 12233322
Q ss_pred -------cccCcEEEEEEECCChhh---------HHHHHHHHHHHHhHCCC-CceEEEeecCCC
Q 023335 168 -------CKDAVAILFMFDLTSRCT---------LNSIVGWYSEARKWNQT-AIPILIGTKFDD 214 (283)
Q Consensus 168 -------~~~ad~iilv~D~~~~~s---------~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL 214 (283)
.+..++||+..|+.+--+ ...++.=++++...-.- .|+.|+.||.|+
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dl 268 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADL 268 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccc
Confidence 256799999999865321 11223335566555443 455699999998
No 404
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.0074 Score=59.76 Aligned_cols=105 Identities=17% Similarity=0.150 Sum_probs=56.9
Q ss_pred EEEEEEeCCCCCCcccc-h---hhh--cccCcEEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH-V---PIA--CKDAVAILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~-~---~~~--~~~ad~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
+.+.|+||+|....... . ... ....+-++||.|.+.. +.+.++ .+.++......+-=+|.||.|-
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i---~~~f~~~~~~~i~glIlTKLDE----- 335 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV---VHAYRHGAGEDVDGCIITKLDE----- 335 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH---HHHHhhcccCCCCEEEEeccCC-----
Confidence 46789999995432211 1 111 1234567899998753 334333 2222221111122488999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhC
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFN 265 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf----~~l~~~i~~ 265 (283)
.. ..-.+..+....++++.+++. |++| +++. +.+++.++.
T Consensus 336 -t~---~~G~iL~i~~~~~lPI~yit~--GQ~VPdDL~~a~~~~lv~~ll~ 380 (767)
T PRK14723 336 -AT---HLGPALDTVIRHRLPVHYVST--GQKVPEHLELAQADELVDRAFA 380 (767)
T ss_pred -CC---CccHHHHHHHHHCCCeEEEec--CCCChhhcccCCHHHHHHHHhc
Confidence 11 134566667777888777653 5566 4442 345566655
No 405
>PRK00098 GTPase RsgA; Reviewed
Probab=96.77 E-value=0.0026 Score=56.57 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
-.++++|.+|||||||+ .+++..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 35889999999999999 887654
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.73 E-value=0.0068 Score=48.12 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=34.8
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
.+.+.|.||+|.... . ..++..||-+|++...+-.+.+. .++-..-..--+++.||.|
T Consensus 91 ~~D~iiIDtaG~~~~--~-~~~~~~Ad~~ivv~tpe~~D~y~-------~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS--E-VDIASMADTTVVVMAPGAGDDIQ-------AIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh--h-hhHHHhCCEEEEEECCCchhHHH-------HhhhhHhhhcCEEEEeCCC
Confidence 466888999886532 2 34788999888887655222221 1111111223489999987
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.011 Score=55.75 Aligned_cols=104 Identities=18% Similarity=0.194 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCCCcccc---hhhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDH---VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~---~~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
..+.++||+|....... .-..+.. ..-.+||.|.+... ..+. +.++.+....+--+|.||.|-
T Consensus 335 ~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~---~i~~~f~~~~~~g~IlTKlDe------ 403 (484)
T PRK06995 335 KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLN---EVVQAYRGPGLAGCILTKLDE------ 403 (484)
T ss_pred CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHH---HHHHHhccCCCCEEEEeCCCC------
Confidence 34678999995543211 1111121 12267888886432 2222 222333333333588899993
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHHH----HHHHHHHhCC
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINV-NKIF----KFIMAKLFNL 266 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~lf----~~l~~~i~~~ 266 (283)
. ...-.+..++...++++.+++ +|++| +++- +.+++.++..
T Consensus 404 t---~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 404 A---ASLGGALDVVIRYKLPLHYVS--NGQRVPEDLHLANKKFLLHRAFCA 449 (484)
T ss_pred c---ccchHHHHHHHHHCCCeEEEe--cCCCChhhhccCCHHHHHHHHhcC
Confidence 1 124556677778888877765 35566 4442 3455666553
No 408
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.72 E-value=0.022 Score=53.19 Aligned_cols=104 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred EEEEEEeCCCCCCccc----chhhhcc---cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFD----HVPIACK---DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~----~~~~~~~---~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
+.+.++||+|...... ....++. ...-+++|.+.+-.. ..+...+..+ ..-.+-=+|.||.|-
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~--~~l~~~~~~f---~~~~~~~vI~TKlDe----- 369 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY--EDLKDIYKHF---SRLPLDGLIFTKLDE----- 369 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH--HHHHHHHHHh---CCCCCCEEEEecccc-----
Confidence 5688999999765431 1222333 234667888876431 2223323322 211122499999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH-HHH----HHHHHHHHhCC
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINV-NKI----FKFIMAKLFNL 266 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v-~~l----f~~l~~~i~~~ 266 (283)
......+..++...+.++.+++. |.+| +++ -+.+++.++..
T Consensus 370 ----t~~~G~i~~~~~~~~lPv~yit~--Gq~VpdDl~~a~~~~l~~~ll~~ 415 (424)
T PRK05703 370 ----TSSLGSILSLLIESGLPISYLTN--GQRVPDDIKVANPEELVRLLLGG 415 (424)
T ss_pred ----cccccHHHHHHHHHCCCEEEEeC--CCCChhhhhhCCHHHHHHHHhcc
Confidence 11234577777888888877654 4444 333 23455555543
No 409
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.65 E-value=0.003 Score=55.57 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=33.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccc--cccc---cce--eeeeEEEEEECCeEEEEEEEeCCCCCCcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQE--RSLQ---MAG--LNLINKTLMVQGARIAFSIWDVGGDSRSF 161 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~---t~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 161 (283)
-.+++|.+|||||||+ ++....-. ...+ .-| .+....-+.+++.. .+.||||-..+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 4679999999999999 88753221 1111 011 12223344453222 357999976643
No 410
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0025 Score=57.93 Aligned_cols=131 Identities=11% Similarity=0.133 Sum_probs=87.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC--------ccc-ccc--------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN--------EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~--------~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 162 (283)
-+|-++..-.+||||.. |++.- ... ... ...|+...+..+.++-+...++++||+|+-.|+-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 35667788889999998 76421 111 111 1226666677777777778899999999999999
Q ss_pred chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
....+++--|+++.|||.+-.-.-+.+.-|.+.-+. +.|-+...||+|. +. ..-+......-+++++.-
T Consensus 118 everclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk---~~----anfe~avdsi~ekl~ak~ 186 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDK---LA----ANFENAVDSIEEKLGAKA 186 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhh---hh----hhhhhHHHHHHHHhCCce
Confidence 899999999999999999866544555567654221 3344788999994 11 111334444555666643
No 411
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=96.63 E-value=0.029 Score=52.98 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=38.0
Q ss_pred EEEEEeCCCCC-------------CcccchhhhcccCcEEEEEEECCChhh-HHHHHHHHHHHHhHCCCC-ceEEEeecC
Q 023335 148 AFSIWDVGGDS-------------RSFDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTA-IPILIGTKF 212 (283)
Q Consensus 148 ~l~i~Dt~G~~-------------~~~~~~~~~~~~ad~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~-~~ilvgnK~ 212 (283)
.+.+.|.||-- ....+...|+.+.++||+|+--.+-+. -.++.++. .+..|.. ..|+|.+|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLV---sq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLV---SQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHH---HhcCCCCCeeEEEEeec
Confidence 46778888832 123456778899999999984322221 11222222 2223433 348999999
Q ss_pred CC
Q 023335 213 DD 214 (283)
Q Consensus 213 DL 214 (283)
||
T Consensus 490 Dl 491 (980)
T KOG0447|consen 490 DL 491 (980)
T ss_pred ch
Confidence 97
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.57 E-value=0.015 Score=41.53 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=42.9
Q ss_pred EEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc-hhhhcccCcEEEEEEEC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH-VPIACKDAVAILFMFDL 180 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~iilv~D~ 180 (283)
+++.|.+|+|||++. .+...--...+. ...++ .+.+.|+++....... .......+|.++++.+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~---------v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR---------VLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe---------EEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999999 664322111111 22222 5778999976543221 14566788999999886
Q ss_pred CCh
Q 023335 181 TSR 183 (283)
Q Consensus 181 ~~~ 183 (283)
+..
T Consensus 69 ~~~ 71 (99)
T cd01983 69 EAL 71 (99)
T ss_pred chh
Confidence 643
No 413
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.015 Score=53.83 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=68.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc-cc----------cccc------------cceeeeeEEE-E-----EECCeEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE-QE----------RSLQ------------MAGLNLINKT-L-----MVQGARIAFS 150 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~-~~----------~~~~------------t~~~~~~~~~-~-----~~~~~~~~l~ 150 (283)
.-++++|++||||||++ ++.... .. +.+. ..++.+.... . .+....+.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 46889999999999999 886421 10 0100 0122211100 0 0011245678
Q ss_pred EEeCCCCCCccc-c---hhhhcc-----cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 151 IWDVGGDSRSFD-H---VPIACK-----DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 151 i~Dt~G~~~~~~-~---~~~~~~-----~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
++||+|...... . ...+++ ...-.+||.|.+... +++... +..+..-.+-=+|.||.|- .
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~---~~~f~~~~~~glIlTKLDE------t 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTV---LKAYESLNYRRILLTKLDE------A 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHH---HHHhcCCCCCEEEEEcccC------C
Confidence 899999653221 1 111221 234678999987653 122222 2222212222599999993 1
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcC
Q 023335 222 LQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
. ..-.+..++...+.|+..++.
T Consensus 373 ~---~~G~il~i~~~~~lPI~ylt~ 394 (432)
T PRK12724 373 D---FLGSFLELADTYSKSFTYLSV 394 (432)
T ss_pred C---CccHHHHHHHHHCCCEEEEec
Confidence 1 134466667777888776654
No 414
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.52 E-value=0.07 Score=43.12 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=91.8
Q ss_pred CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc
Q 023335 92 YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD 170 (283)
Q Consensus 92 ~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 170 (283)
++..+......|+++|..+.++..|. .++..+-. +. ..+..-. . +-+ +. +..... -.
T Consensus 7 ~~klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~---------~~-l~Vh~a~-s----LPL-p~--e~~~lR----pr 64 (176)
T PF11111_consen 7 FDKLPELNTATILLVGTEEALLQQLAEAMLEEDKE---------FK-LKVHLAK-S----LPL-PS--ENNNLR----PR 64 (176)
T ss_pred cccCCCcceeEEEEecccHHHHHHHHHHHHhhccc---------ee-EEEEEec-c----CCC-cc--cccCCC----ce
Confidence 34455555789999999999999999 88752210 10 0111100 0 001 11 111111 35
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
.|.|+|++|.++..|++.++.-+..+........+.++++-..- .+...+..+++.+++..+.++++.+--.+.+
T Consensus 65 IDlIVFvinl~sk~SL~~ve~SL~~vd~~fflGKVCfl~t~a~~-----~~~~sv~~~~V~kla~~y~~plL~~~le~~~ 139 (176)
T PF11111_consen 65 IDLIVFVINLHSKYSLQSVEASLSHVDPSFFLGKVCFLATNAGR-----ESHCSVHPNEVRKLAATYNSPLLFADLENEE 139 (176)
T ss_pred eEEEEEEEecCCcccHHHHHHHHhhCChhhhccceEEEEcCCCc-----ccccccCHHHHHHHHHHhCCCEEEeecccch
Confidence 79999999999999999988777666544444555555555542 2334455899999999999999988777776
Q ss_pred CHHHHHHHHHHHH
Q 023335 251 NVNKIFKFIMAKL 263 (283)
Q Consensus 251 ~v~~lf~~l~~~i 263 (283)
+...+=+.|++.+
T Consensus 140 ~~~~lAqRLL~~l 152 (176)
T PF11111_consen 140 GRTSLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHHHHH
Confidence 6665555555433
No 415
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.50 E-value=0.0043 Score=53.67 Aligned_cols=58 Identities=19% Similarity=0.335 Sum_probs=41.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcccccccc---ceeeeeEEEEE--ECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQM---AGLNLINKTLM--VQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t---~~~~~~~~~~~--~~~~~~~l~i~Dt~G 156 (283)
..++|+.+|..|.|||||+ .+.+-.|.....+ .++.....++. -.+..+++.+.||.|
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 4789999999999999999 9999888732221 12223233333 356678899999998
No 416
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.49 E-value=0.0077 Score=44.86 Aligned_cols=96 Identities=11% Similarity=0.085 Sum_probs=56.1
Q ss_pred cCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh
Q 023335 107 GDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC 184 (283)
Q Consensus 107 G~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~ 184 (283)
+..|+||||+. .+...-... ...+.-.|..... + ..+.+.|+++... ......+..+|.++++.+.+ ..
T Consensus 7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~----~--~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~ 77 (106)
T cd03111 7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQF----G--DDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-LP 77 (106)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCC----C--CCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-hH
Confidence 45779999988 653322111 2222222211110 1 1578899998653 23445678999999998754 55
Q ss_pred hHHHHHHHHHHHHhHCCC--CceEEEeec
Q 023335 185 TLNSIVGWYSEARKWNQT--AIPILIGTK 211 (283)
Q Consensus 185 s~~~~~~~~~~i~~~~~~--~~~ilvgnK 211 (283)
++..+..+++.+++.... ....+|.|+
T Consensus 78 s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 78 SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 667777777777665432 233477775
No 417
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.42 E-value=0.005 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
||.+-|.+|+|||||+ +++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999 87643
No 418
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0089 Score=55.73 Aligned_cols=110 Identities=16% Similarity=0.241 Sum_probs=72.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc------------cc---cccccceeeeeEEEEEE----------------CCeEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE------------QE---RSLQMAGLNLINKTLMV----------------QGARIA 148 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~------------~~---~~~~t~~~~~~~~~~~~----------------~~~~~~ 148 (283)
-++.++-.-.-|||||. .++.+. |. ......++.+.+..+.. ++..+.
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 35667788888999999 886432 21 01111233333322221 355678
Q ss_pred EEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 149 FSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 149 l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
++++|.+|+-.|.+.....++-.|+.++|+|.-+.--.+.-.-+.+.+ .+...|+++.||.|
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~---~ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAI---AERIKPVLVMNKMD 161 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHH---HhhccceEEeehhh
Confidence 999999999999999999999999999999987653222211122222 23567899999999
No 419
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.33 E-value=0.3 Score=45.17 Aligned_cols=153 Identities=12% Similarity=0.201 Sum_probs=88.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC--------ccc-----cccc---------cceeeeeE---EEEEE-CCeEEEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN--------EQE-----RSLQ---------MAGLNLIN---KTLMV-QGARIAFSIW 152 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~--------~~~-----~~~~---------t~~~~~~~---~~~~~-~~~~~~l~i~ 152 (283)
.+=|-|+|+-.+|||||| ||..- .+. +..| |+...|.. ..+.+ ++..+++.+.
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 466889999999999999 99642 111 1111 22222211 23344 4678889999
Q ss_pred eCCCC--------C-----C------cccch----------hhhcc--cCcEEEEEEECC----ChhhHHHHH-HHHHHH
Q 023335 153 DVGGD--------S-----R------SFDHV----------PIACK--DAVAILFMFDLT----SRCTLNSIV-GWYSEA 196 (283)
Q Consensus 153 Dt~G~--------~-----~------~~~~~----------~~~~~--~ad~iilv~D~~----~~~s~~~~~-~~~~~i 196 (283)
|+.|- . + |..-. +..++ ..-++++.-|.+ .++.|.... +..+++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 98761 1 1 00000 11112 223555555544 245565553 566666
Q ss_pred HhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC--CCcCHHHHHHHHHH
Q 023335 197 RKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT--HNINVNKIFKFIMA 261 (283)
Q Consensus 197 ~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~--~~~~v~~lf~~l~~ 261 (283)
+.. ++|.|++.|-.+ .......+...++.++++++.+.+++. +.+.|..+++.++.
T Consensus 177 k~i--gKPFvillNs~~-------P~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTK-------PYSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred HHh--CCCEEEEEeCCC-------CCCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 654 456788888877 223345677788888999999987775 34445555555443
No 420
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.17 E-value=0.022 Score=52.13 Aligned_cols=92 Identities=12% Similarity=0.135 Sum_probs=50.4
Q ss_pred EEEEEEEeCCCCCCcccc----hhhhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDH----VPIACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~----~~~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
.+.+.+.||+|....... ...+.. ..+.+++|.+.+. ...++...+.. +..-.+--+|.||.|-
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~---f~~l~i~glI~TKLDE----- 354 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPK---LAEIPIDGFIITKMDE----- 354 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHh---cCcCCCCEEEEEcccC-----
Confidence 357889999997543221 111222 3456677776532 22333333322 2222223599999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
. ...-.+..++...+.|+..+|. |++|.
T Consensus 355 -T---~~~G~~Lsv~~~tglPIsylt~--GQ~Vp 382 (407)
T PRK12726 355 -T---TRIGDLYTVMQETNLPVLYMTD--GQNIT 382 (407)
T ss_pred -C---CCccHHHHHHHHHCCCEEEEec--CCCCC
Confidence 1 1144566777778888777654 44444
No 421
>PRK08118 topology modulation protein; Reviewed
Probab=96.11 E-value=0.0038 Score=50.64 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
||+|+|.+|+|||||. ++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999 6653
No 422
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.06 E-value=0.047 Score=44.39 Aligned_cols=86 Identities=16% Similarity=0.054 Sum_probs=59.2
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCccc
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQW 224 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~ 224 (283)
..+.+.++|+++... ......+..+|.++++...+ ..+...+..+++.+++.. .+..+|.||+|. . .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~--~~~~vV~N~~~~----~----~ 157 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHFG--IPVGVVINKYDL----N----D 157 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHcC--CCEEEEEeCCCC----C----c
Confidence 356788999997543 23445678999999999876 446667777777666542 344699999994 1 1
Q ss_pred chHHHHHHHHHHcCCcEEE
Q 023335 225 TIATQARAYAKAMKATLFF 243 (283)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~e 243 (283)
...+++.++++.++++++-
T Consensus 158 ~~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 158 EIAEEIEDYCEEEGIPILG 176 (179)
T ss_pred chHHHHHHHHHHcCCCeEE
Confidence 2355677788888887653
No 423
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.04 E-value=0.004 Score=51.03 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.||+|+|.||+||||+. ++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999 77665
No 424
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.00 E-value=0.0046 Score=46.81 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|.|.+||||||+. .+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 7654
No 425
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.019 Score=52.15 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=89.5
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc----------cc---------ccc-----ccce------eeeeEEEEEECCe
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE----------QE---------RSL-----QMAG------LNLINKTLMVQGA 145 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~----------~~---------~~~-----~t~~------~~~~~~~~~~~~~ 145 (283)
+...++++++|.--+||||+- +++.-. +. ..| .|.. -+.....-.+...
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 345789999999999999987 764310 00 000 0111 0111111112233
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHHHHHHH--HHHhHCCCCceEEEeecCCCCCC-CC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYS--EARKWNQTAIPILIGTKFDDFVR-LP 219 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~~~~~~--~i~~~~~~~~~ilvgnK~DL~~~-l~ 219 (283)
.-.+.+.|.+|+..|-...-.-..+||..++|.++...+ .|+.=-+-.+ .+.+-..-...|++.||.|-... .+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 456889999999887554444457889999998874321 1222111111 12222223455889999995211 11
Q ss_pred CCcccchHHHHHHHHHHcC------CcEEEEcCCCCcCHHHHHH
Q 023335 220 PDLQWTIATQARAYAKAMK------ATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~------~~~~e~Sa~~~~~v~~lf~ 257 (283)
.++-....+.+..+.+..| ..|+.+|..+|.++++.-.
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 1111223455566666444 3478899999999988654
No 426
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.97 E-value=0.0078 Score=50.49 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=21.3
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcC
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
......-|+|+|++|||||||+ .+...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 3344567889999999999999 88654
No 427
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=95.96 E-value=0.022 Score=46.34 Aligned_cols=42 Identities=14% Similarity=-0.011 Sum_probs=25.9
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
|++++|+|+.++.+-.+ ..+.+.+.....+.|.|+|.||+||
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL 42 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDL 42 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhc
Confidence 78999999987633211 1222222111234677999999997
No 428
>PRK07261 topology modulation protein; Provisional
Probab=95.93 E-value=0.0054 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
||+|+|.+|+|||||. .+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 7999999999999999 7653
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.92 E-value=0.086 Score=46.16 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=51.4
Q ss_pred EEEEEEEeCCCCCCcccc-h---hhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDH-V---PIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~-~---~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
.+.+.++||+|....... . ..++ -..+-++||.|.+... +++..++.. +..-.+-=+|.||.|-
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~---f~~~~~~~~I~TKlDe----- 223 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITN---FKDIHIDGIVFTKFDE----- 223 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHH---hCCCCCCEEEEEeecC-----
Confidence 467889999997643211 1 1122 2446789999986432 233333333 3332222599999993
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
.. ..-.+..++...+.|+..++. |++|.
T Consensus 224 -t~---~~G~~l~~~~~~~~Pi~~it~--Gq~vp 251 (270)
T PRK06731 224 -TA---SSGELLKIPAVSSAPIVLMTD--GQDVK 251 (270)
T ss_pred -CC---CccHHHHHHHHHCcCEEEEeC--CCCCC
Confidence 11 133455666677888776643 44443
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.90 E-value=0.0051 Score=47.93 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHhH-hhh
Q 023335 103 ISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~ 120 (283)
|+++|.+|+|||||+ .+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 689999999999999 876
No 431
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.064 Score=45.55 Aligned_cols=46 Identities=11% Similarity=0.031 Sum_probs=28.6
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
...+++|.+|.|.|.+- .|+....+.-+-..+.. -+++.+|.||.|
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~~elg-~k~i~~V~NKv~ 196 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELAEELG-IKRIFVVLNKVD 196 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHhC-CceEEEEEeecc
Confidence 34578999999999874 34444333322222211 245579999999
No 432
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.11 Score=48.01 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=52.1
Q ss_pred EEEEEEEeCCCCCCcccc----hhhhccc--Cc-EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 146 RIAFSIWDVGGDSRSFDH----VPIACKD--AV-AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~----~~~~~~~--ad-~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
.+.+.+.||+|......+ ...++.. .+ -.+||.|++.. .+.+...+ .++..-.+-=+|.||.|-
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~---~~~~~~~~~~~I~TKlDe---- 324 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIF---HQFSPFSYKTVIFTKLDE---- 324 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHH---HHhcCCCCCEEEEEeccC----
Confidence 456889999997653321 1122232 23 58899998865 23333333 333322233599999993
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
. ...-.+..++...+.++..++ +|++|
T Consensus 325 --t---~~~G~~l~~~~~~~~Pi~yit--~Gq~v 351 (388)
T PRK12723 325 --T---TCVGNLISLIYEMRKEVSYVT--DGQIV 351 (388)
T ss_pred --C---CcchHHHHHHHHHCCCEEEEe--CCCCC
Confidence 1 113456666777788876664 35555
No 433
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.78 E-value=0.0063 Score=51.98 Aligned_cols=20 Identities=20% Similarity=0.637 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHhHhhhcC
Q 023335 103 ISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi~~~~~ 122 (283)
|+++|++|||||||++++.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999955443
No 434
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.77 E-value=0.0071 Score=50.66 Aligned_cols=39 Identities=26% Similarity=0.169 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCcEEE--EcCCCCcCHHHHHHHHHHHHhC
Q 023335 227 ATQARAYAKAMKATLFF--SSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 227 ~~~~~~~~~~~~~~~~e--~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
...++.+|-+-.+-.|- |||.+.+-+.|+++-+.+..-+
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc
Confidence 34455555554555552 9999999999999887776644
No 435
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.76 E-value=0.032 Score=42.72 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
--+++.|++|+|||+|+ .+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999 76654
No 436
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.73 E-value=0.0059 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=16.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
||+|.|.+++|||||+ .+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999 87654
No 437
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.68 E-value=0.0086 Score=54.26 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=39.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 157 (283)
...+++-|+|-|||||||+| ++........-++.|++..-..+..+. .+.+.|.+|.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk---~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDK---KIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccC---CceeccCCce
Confidence 45789999999999999999 998887763333344444334444432 3567899884
No 438
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=95.62 E-value=0.074 Score=42.89 Aligned_cols=93 Identities=8% Similarity=-0.030 Sum_probs=55.1
Q ss_pred eEEEEEEEeCCCCCCcccchhhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPD 221 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~ 221 (283)
..+.+.|.|+++... ......+ ..+|.++++...+ ..+...+..+++.+++.. .+. -+|.|+.+-.......
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~-~~s~~~~~~~~~~l~~~~--~~~~gvv~N~~~~~~~~~~~ 140 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQ-EVALDDVRKAIDMFKKVN--IPILGVVENMSYFVCPHCGK 140 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCc-hhhHHHHHHHHHHHHhcC--CCeEEEEEcCCcccCCCCCC
Confidence 356788999998632 2222222 5789999998655 466777777777777653 233 4889998831000011
Q ss_pred cccc-hHHHHHHHHHHcCCcEE
Q 023335 222 LQWT-IATQARAYAKAMKATLF 242 (283)
Q Consensus 222 ~~~~-~~~~~~~~~~~~~~~~~ 242 (283)
.... .....+++++.++.+++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~ 162 (169)
T cd02037 141 KIYIFGKGGGEKLAEELGVPLL 162 (169)
T ss_pred cccccCCccHHHHHHHcCCCEE
Confidence 1111 13456777777776544
No 439
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=95.60 E-value=0.11 Score=44.78 Aligned_cols=70 Identities=24% Similarity=0.317 Sum_probs=46.8
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-------hHHHHHHHHHHHHh-----HCCCCceEEEeecC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-------TLNSIVGWYSEARK-----WNQTAIPILIGTKF 212 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-------s~~~~~~~~~~i~~-----~~~~~~~ilvgnK~ 212 (283)
.++.++.+|.+||..-+.-|-..+.+..++|+|...++.+ +-+.+++-+...+. +....-+||..||.
T Consensus 200 dkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKq 279 (379)
T KOG0099|consen 200 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQ 279 (379)
T ss_pred cccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHH
Confidence 3567999999999988888889999999999999876521 11222221221111 11233457889999
Q ss_pred CC
Q 023335 213 DD 214 (283)
Q Consensus 213 DL 214 (283)
||
T Consensus 280 Dl 281 (379)
T KOG0099|consen 280 DL 281 (379)
T ss_pred HH
Confidence 96
No 440
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.60 E-value=0.018 Score=54.93 Aligned_cols=109 Identities=14% Similarity=0.174 Sum_probs=69.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc-cc---cccc-------------cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE-QE---RSLQ-------------MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~-~~---~~~~-------------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
+|-+.-.--+||||+- +.+... .. .... ..|+...+......-.++.++++||||+-.|.-.
T Consensus 41 NIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~E 120 (721)
T KOG0465|consen 41 NIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTFE 120 (721)
T ss_pred ccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEEE
Confidence 4555566678999999 764321 11 1110 1133333333333334678999999999999888
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
....++--|+.++++|....-.-+...-|.+. +++ +.|-|...||.|
T Consensus 121 VeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~-~ry--~vP~i~FiNKmD 167 (721)
T KOG0465|consen 121 VERALRVLDGAVLVLDAVAGVESQTETVWRQM-KRY--NVPRICFINKMD 167 (721)
T ss_pred ehhhhhhccCeEEEEEcccceehhhHHHHHHH-Hhc--CCCeEEEEehhh
Confidence 88889999999999997655333344456543 332 345578889998
No 441
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.53 E-value=0.011 Score=39.46 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.+|.|+.|+|||||+ .+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 3889999999999999 764
No 442
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.50 E-value=0.27 Score=44.16 Aligned_cols=97 Identities=8% Similarity=0.021 Sum_probs=49.8
Q ss_pred EEEEEEeCCCCCCcccchhhhc--------ccCcEEEEEEECCChhhHHH-HHH-HHHHHHhHCCCCceEEEeecCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDHVPIAC--------KDAVAILFMFDLTSRCTLNS-IVG-WYSEARKWNQTAIPILIGTKFDDFV 216 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~--------~~ad~iilv~D~~~~~s~~~-~~~-~~~~i~~~~~~~~~ilvgnK~DL~~ 216 (283)
....++++.|.-.-......+. -.-|++|-|+|..+-..... +.+ ..+++. .--+||.||.||
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-----~AD~ivlNK~Dl-- 157 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-----FADVIVLNKTDL-- 157 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-----hCcEEEEecccC--
Confidence 3345667777543222222221 24578999999876433221 222 222221 123899999997
Q ss_pred CCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHH
Q 023335 217 RLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf 256 (283)
..++ ..+..++..++++ ++++.+|.. +....+++
T Consensus 158 -v~~~----~l~~l~~~l~~lnp~A~i~~~~~~-~~~~~~ll 193 (323)
T COG0523 158 -VDAE----ELEALEARLRKLNPRARIIETSYG-DVDLAELL 193 (323)
T ss_pred -CCHH----HHHHHHHHHHHhCCCCeEEEcccc-CCCHHHhh
Confidence 2222 1344455555554 467777773 33344333
No 443
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.36 E-value=0.031 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
..+|+|+|.+|+|||||+ .+...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999 77653
No 444
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.30 E-value=0.03 Score=49.37 Aligned_cols=57 Identities=11% Similarity=0.128 Sum_probs=34.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-------cccccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-------RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 157 (283)
.++.+.|+|-||||||||+ .+...... ...|........ .+.+.... .+.+.||+|-
T Consensus 142 ~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPGi 206 (335)
T KOG2485|consen 142 SEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPGI 206 (335)
T ss_pred CceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCCc
Confidence 4789999999999999999 76443222 223322222211 13333222 2677899994
No 445
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.27 E-value=0.014 Score=48.22 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
=|+|+|++|||||||+ +++...
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 3889999999999999 887653
No 446
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.24 E-value=0.015 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE 125 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~ 125 (283)
-.++++|++|+|||+++ .+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 36899999999999999 77655433
No 447
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.23 E-value=0.26 Score=44.28 Aligned_cols=20 Identities=25% Similarity=0.325 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+|-|.-|+|||||+ +++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 7 TLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 457899999999999 98754
No 448
>PRK06217 hypothetical protein; Validated
Probab=95.23 E-value=0.014 Score=47.94 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.||+|+|.+|+|||||. ++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 7754
No 449
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.14 E-value=0.013 Score=46.06 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.|.|+|..|+|||||+ .+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999 87654
No 450
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.14 E-value=0.031 Score=50.22 Aligned_cols=92 Identities=16% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCC-CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHH
Q 023335 155 GGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY 233 (283)
Q Consensus 155 ~G~-~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~ 233 (283)
+|+ .++.......+...|+++-|.|+-++.+-. ...+.++....+.++|+||+|| .+ ..+..+-.+.+
T Consensus 18 ~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~-----~~~l~~~v~~k~~i~vlNK~DL---~~---~~~~~~W~~~~ 86 (322)
T COG1161 18 PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTR-----NPELERIVKEKPKLLVLNKADL---AP---KEVTKKWKKYF 86 (322)
T ss_pred CCchHHHHHHHHHhcccCCEEEEEEecccccccc-----CccHHHHHccCCcEEEEehhhc---CC---HHHHHHHHHHH
Confidence 443 345556677889999999999999886533 2344444445566999999997 22 22233444444
Q ss_pred HHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 234 AKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 234 ~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
.+..+...+.+|++.+.+...+..
T Consensus 87 ~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 87 KKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HhcCCCccEEEEeecccCccchHH
Confidence 455466678888888877666653
No 451
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.13 E-value=0.016 Score=44.76 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.++|+|..|+|||||+ .+.+.
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEEccCCCccccceeeeccc
Confidence 5889999999999999 65543
No 452
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.09 E-value=0.015 Score=49.85 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.++++|+|.+|+|||+|+ .++..
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999 77654
No 453
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.054 Score=49.17 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=48.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc--------------Cccc-ccc-------ccceeeeeEEEEEE-------------CCe
Q 023335 102 KISLLGDCQIGKTSFV-KYVG--------------NEQE-RSL-------QMAGLNLINKTLMV-------------QGA 145 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~--------------~~~~-~~~-------~t~~~~~~~~~~~~-------------~~~ 145 (283)
=|+++|..|+||||.+ ++.. +.|. ... .-.++.++...... ..+
T Consensus 103 VimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke 182 (483)
T KOG0780|consen 103 VIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE 182 (483)
T ss_pred EEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc
Confidence 4789999999999999 7742 1111 000 01133333221111 234
Q ss_pred EEEEEEEeCCCCCCc-----ccchhh-hcccCcEEEEEEECCChhh
Q 023335 146 RIAFSIWDVGGDSRS-----FDHVPI-ACKDAVAILFMFDLTSRCT 185 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~-----~~~~~~-~~~~ad~iilv~D~~~~~s 185 (283)
.+.+.|.||+|.+.- ..+... -.-+.|-+|+|.|.+-...
T Consensus 183 ~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQa 228 (483)
T KOG0780|consen 183 NFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQA 228 (483)
T ss_pred CCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHh
Confidence 678999999996542 111111 1235789999999876543
No 454
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.04 E-value=0.016 Score=44.21 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
|++.|++|+|||+++ .+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 689999999999999 6654
No 455
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.00 E-value=0.014 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
.=+++.|++|||||||+ ++....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 45789999999999999 887665
No 456
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.97 E-value=0.019 Score=39.19 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
|++.|.+|+||||+. .+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 678999999999999 6654
No 457
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.096 Score=48.47 Aligned_cols=53 Identities=15% Similarity=0.173 Sum_probs=32.3
Q ss_pred EEEEEeCCCCCCcc-cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC
Q 023335 148 AFSIWDVGGDSRSF-DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ 201 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~-~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~ 201 (283)
.+.+.|.+|....+ .+....+...|++|+-= .++--..+++..+-+.|..|+.
T Consensus 699 TikikdLSGGQKaRValaeLal~~PDvlILDE-PTNNLDIESIDALaEAIney~G 752 (807)
T KOG0066|consen 699 TIKIKDLSGGQKARVALAELALGGPDVLILDE-PTNNLDIESIDALAEAINEYNG 752 (807)
T ss_pred eEeeeecCCcchHHHHHHHHhcCCCCEEEecC-CCCCcchhhHHHHHHHHHhccC
Confidence 46778888765533 45566777888776643 3333335555566666776654
No 458
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.89 E-value=0.018 Score=48.81 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhHhhhc
Q 023335 102 KISLLGDCQIGKTSFVKYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~ 121 (283)
-|+|+|++|||||||+.+++
T Consensus 33 ~vaI~GpSGSGKSTLLniig 52 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLG 52 (226)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999994443
No 459
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.82 E-value=0.019 Score=44.64 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|+++|++|+|||+|+ .+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la 20 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELA 20 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999 664
No 460
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.79 E-value=0.02 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
|+|.|.+||||||++ .+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999 76554
No 461
>PRK14530 adenylate kinase; Provisional
Probab=94.73 E-value=0.02 Score=48.19 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+|+|+|.+|+||||+. .+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La 24 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLA 24 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999 664
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.69 E-value=0.023 Score=44.40 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
|+|+|++|+|||||+ .+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999 77653
No 463
>PRK03839 putative kinase; Provisional
Probab=94.67 E-value=0.022 Score=46.48 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+|+|+|.+|+||||+. ++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999 6644
No 464
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.022 Score=51.97 Aligned_cols=93 Identities=11% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCCCCCceeeE----EEEEcCCCCcHHHhHhhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhh
Q 023335 92 YDTDSDLVSLK----ISLLGDCQIGKTSFVKYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIA 167 (283)
Q Consensus 92 ~~~~~~~~~~K----I~vlG~~~vGKSSLi~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 167 (283)
++..+-..++| |.++|..|+|||||++++.+-+. |..| .+.++|+.+ |--..++|+.+....
T Consensus 337 FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG------~I~ldg~pV-----~~e~ledYR~LfSav 402 (546)
T COG4615 337 FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSG------EILLDGKPV-----SAEQLEDYRKLFSAV 402 (546)
T ss_pred ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCC------ceeECCccC-----CCCCHHHHHHHHHHH
Confidence 33444444444 66999999999999955554433 2222 344556553 333456677776666
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARK 198 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~ 198 (283)
+.+.+.+==.+......+-+.+..|++.+.-
T Consensus 403 FsDyhLF~~ll~~e~~as~q~i~~~LqrLel 433 (546)
T COG4615 403 FSDYHLFDQLLGPEGKASPQLIEKWLQRLEL 433 (546)
T ss_pred hhhHhhhHhhhCCccCCChHHHHHHHHHHHH
Confidence 6555444334444444677888899887753
No 465
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.59 E-value=0.024 Score=46.57 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|+|++|+|||||+ .+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999 6644
No 466
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.56 E-value=0.025 Score=45.96 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.|+|+|++|+|||||+ .+...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999 77663
No 467
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.55 E-value=0.063 Score=41.73 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-|++.|+.|+|||||+ .+...
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999 66654
No 468
>PF05729 NACHT: NACHT domain
Probab=94.54 E-value=0.024 Score=44.89 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
++|.|++|+|||+++ +++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999 87654
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.49 E-value=0.025 Score=46.02 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|+|++|||||||+ .+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999 76543
No 470
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.48 E-value=0.073 Score=49.11 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=49.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc---C-ccc------ccc------------ccceeeeeEEEEEE-------------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG---N-EQE------RSL------------QMAGLNLINKTLMV------------- 142 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~---~-~~~------~~~------------~t~~~~~~~~~~~~------------- 142 (283)
.+..|+++|..|+||||.+ ++.. + ... +.| ..++++++...-..
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999998 7632 1 000 111 01233433321000
Q ss_pred CCeEEEEEEEeCCCCCCccc-chhh-----hcccCcEEEEEEECCChh
Q 023335 143 QGARIAFSIWDVGGDSRSFD-HVPI-----ACKDAVAILFMFDLTSRC 184 (283)
Q Consensus 143 ~~~~~~l~i~Dt~G~~~~~~-~~~~-----~~~~ad~iilv~D~~~~~ 184 (283)
....+.+.|.||+|...... +... -.-+.|=++||.|..-.+
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQ 226 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQ 226 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccch
Confidence 01235688999999765432 1111 124678899999987654
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.46 E-value=0.029 Score=41.86 Aligned_cols=19 Identities=32% Similarity=0.609 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.++++|++|+|||||+ .+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 5789999999999999 654
No 472
>PRK14532 adenylate kinase; Provisional
Probab=94.45 E-value=0.027 Score=46.26 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+|+++|.||+||||+. ++..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999 7753
No 473
>PRK08233 hypothetical protein; Provisional
Probab=94.40 E-value=0.032 Score=45.30 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+-|+|.|.+|+|||||. ++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 56778999999999999 7764
No 474
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.38 E-value=0.028 Score=45.88 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|+|+|.+||||||++ .+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999 776
No 475
>PRK13949 shikimate kinase; Provisional
Probab=94.37 E-value=0.03 Score=45.46 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
+|+|+|.+|+||||+. .+.
T Consensus 3 ~I~liG~~GsGKstl~~~La 22 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALA 22 (169)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 7999999999999999 554
No 476
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.33 E-value=0.027 Score=43.06 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
-++|.|.+|+|||+++ ++....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHh
Confidence 3789999999999999 887654
No 477
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.26 E-value=0.028 Score=45.53 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=15.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--++|.|.+|+|||+|+ ++..
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 45889999999999999 7754
No 478
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.25 E-value=0.032 Score=48.33 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++++|+.|||||||+ .+.+
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 679999999999999 6654
No 479
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.24 E-value=0.018 Score=52.27 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
.+...+-|-+||-||+||||+| .+-+++....-|-.|.+ +...+-...-.+-++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET---KVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET---KVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc---hHHHHHHHHhceeEecCCC
No 480
>PLN02165 adenylate isopentenyltransferase
Probab=94.22 E-value=0.069 Score=47.98 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--|+|+|++|+|||+|. .+..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 36899999999999999 7654
No 481
>PRK02496 adk adenylate kinase; Provisional
Probab=94.15 E-value=0.039 Score=45.19 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+|+|+|.+|+||||+. .+.
T Consensus 2 ~~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 654
No 482
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.13 E-value=0.035 Score=47.15 Aligned_cols=21 Identities=14% Similarity=0.518 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
-|+++|++|+|||||+|.+++
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 388999999999999944444
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.11 E-value=0.035 Score=45.24 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.-+.|+|.+|+|||||+ +++..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHH
Confidence 35789999999999999 88753
No 484
>PRK14531 adenylate kinase; Provisional
Probab=94.08 E-value=0.038 Score=45.30 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..+|+++|.||+||||+. ++..
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 358999999999999999 6643
No 485
>PHA00729 NTP-binding motif containing protein
Probab=94.08 E-value=0.039 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+|+|.|.||+|||+|. ++...
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999 87653
No 486
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.087 Score=45.28 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.|+|+.|+|||||+ .+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (246)
T PRK14269 30 ITALIGASGCGKSTFLRCFNR 50 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999 5554
No 487
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.05 E-value=0.036 Score=47.32 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=18.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+||+|+|.|||||||+. .+..
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999 6643
No 488
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=94.04 E-value=0.11 Score=48.69 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=48.4
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
.+..+|+||.++|+.++--|.. ..+...+....+.+..+|+.||.|| +++. ....-.++..+.++++++-||
T Consensus 171 VlErSDivvqIVDARnPllfr~-~dLe~Yvke~d~~K~~~LLvNKaDL---l~~~----qr~aWa~YF~~~ni~~vf~SA 242 (562)
T KOG1424|consen 171 VLERSDIVVQIVDARNPLLFRS-PDLEDYVKEVDPSKANVLLVNKADL---LPPE----QRVAWAEYFRQNNIPVVFFSA 242 (562)
T ss_pred HHhhcceEEEEeecCCccccCC-hhHHHHHhccccccceEEEEehhhc---CCHH----HHHHHHHHHHhcCceEEEEec
Confidence 4679999999999998754432 2223333333445566899999998 4432 123334455566899999888
Q ss_pred CC
Q 023335 247 TH 248 (283)
Q Consensus 247 ~~ 248 (283)
..
T Consensus 243 ~~ 244 (562)
T KOG1424|consen 243 LA 244 (562)
T ss_pred cc
Confidence 76
No 489
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.01 E-value=0.39 Score=46.04 Aligned_cols=90 Identities=11% Similarity=-0.032 Sum_probs=42.8
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcc-cchH--HHHHHHHHHcCCcEEEE
Q 023335 172 VAILFMFDLTSR---CTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQ-WTIA--TQARAYAKAMKATLFFS 244 (283)
Q Consensus 172 d~iilv~D~~~~---~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~e~ 244 (283)
.-+|||=|+-+. ++ ..++..+.+..... .. |.|+|.+-+|....-..... .... --..++....++..+..
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~-~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSS-RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHcC-CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 356666666442 22 33333333333222 33 66788886653111010000 0001 11234445556777777
Q ss_pred cCCCCcCHHHHHHHHHHHH
Q 023335 245 SATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i 263 (283)
.+.+..-+.+.+..|+..-
T Consensus 211 NpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKE 229 (519)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 7776666777666666543
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.00 E-value=0.032 Score=45.81 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+|+|+|.+|+||||+. .+..
T Consensus 1 ~I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7654
No 491
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=94.00 E-value=0.41 Score=40.75 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH--HHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcc
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI--VGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQ 223 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~ 223 (283)
+.+.|.|+.|... ......+..+|.+|+=.-.+..+.-+.+ .+|+.++.+.....+| -|+.|+..- ...
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~------~~~ 155 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA------ARL 155 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc------chh
Confidence 5678999988654 3355567789999988766644433322 3566666544333344 588999872 111
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHH
Q 023335 224 WTIATQARAYAKAMKATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 257 (283)
........++.+ +++.|.+.-....-..++|.
T Consensus 156 ~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 156 TRAQRIISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred hHHHHHHHHHHh--cCCccccccccHHHHHHHHH
Confidence 122333344443 47888888877777777666
No 492
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.97 E-value=0.051 Score=45.48 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..-|.|+|.+|+|||||+ .+.+
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999 7654
No 493
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.92 E-value=0.039 Score=45.94 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
--|+|+|++|+|||||+ .+.+.
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999 66553
No 494
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.92 E-value=0.039 Score=49.67 Aligned_cols=19 Identities=32% Similarity=0.618 Sum_probs=16.3
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++++|++|||||||+ .+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 789999999999999 5543
No 495
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.90 E-value=0.037 Score=46.46 Aligned_cols=20 Identities=25% Similarity=0.360 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
||+|+|.||+||||+. ++..
T Consensus 1 rI~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7643
No 496
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.86 E-value=0.038 Score=46.39 Aligned_cols=19 Identities=21% Similarity=0.566 Sum_probs=15.7
Q ss_pred EEEEcCCCCcHHHhHhhhc
Q 023335 103 ISLLGDCQIGKTSFVKYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi~~~~ 121 (283)
.+++|++|||||||+|.++
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 4699999999999994443
No 497
>PF13173 AAA_14: AAA domain
Probab=93.81 E-value=0.039 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ 124 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~ 124 (283)
-+++.|+.+||||||+ ++.....
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999 8876543
No 498
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.78 E-value=0.044 Score=44.67 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=16.6
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
|+|+|.|||||||+. ++..
T Consensus 2 i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 689999999999999 7654
No 499
>PF13479 AAA_24: AAA domain
Probab=93.75 E-value=0.048 Score=45.94 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hh
Q 023335 100 SLKISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~ 119 (283)
.+|++|.|++|+|||||+ .+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 589999999999999999 77
No 500
>PLN03025 replication factor C subunit; Provisional
Probab=93.70 E-value=0.33 Score=43.49 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+++.|++|+||||++ .+.+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999 76554
Done!