Query 023335
Match_columns 283
No_of_seqs 393 out of 1963
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 05:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2.1E-39 7.1E-44 273.7 18.0 168 95-267 8-178 (216)
2 3ihw_A Centg3; RAS, centaurin, 100.0 1.2E-32 4E-37 226.4 19.1 161 97-266 17-181 (184)
3 2a5j_A RAS-related protein RAB 100.0 2.2E-32 7.7E-37 225.4 20.4 164 98-266 19-185 (191)
4 2hup_A RAS-related protein RAB 100.0 7.9E-33 2.7E-37 230.4 17.7 165 97-266 26-194 (201)
5 3reg_A RHO-like small GTPase; 100.0 4.3E-32 1.5E-36 224.1 21.3 170 95-268 18-191 (194)
6 2hxs_A RAB-26, RAS-related pro 100.0 2E-32 6.7E-37 222.3 18.3 166 98-268 4-176 (178)
7 3cbq_A GTP-binding protein REM 100.0 3.2E-32 1.1E-36 225.9 19.9 165 98-267 21-190 (195)
8 2fu5_C RAS-related protein RAB 100.0 1.4E-32 4.7E-37 224.6 17.1 166 98-268 6-174 (183)
9 2g3y_A GTP-binding protein GEM 100.0 1.4E-32 5E-37 231.0 17.5 166 97-267 34-205 (211)
10 3c5c_A RAS-like protein 12; GD 100.0 2.9E-32 9.8E-37 224.4 18.8 161 98-265 19-186 (187)
11 3tw8_B RAS-related protein RAB 100.0 5.8E-32 2E-36 219.7 19.9 165 98-267 7-173 (181)
12 3q3j_B RHO-related GTP-binding 100.0 2.3E-32 7.9E-37 230.0 18.0 176 95-271 22-209 (214)
13 2ew1_A RAS-related protein RAB 100.0 3.1E-32 1.1E-36 227.2 18.3 164 98-266 24-190 (201)
14 2gf9_A RAS-related protein RAB 100.0 2.2E-31 7.5E-36 219.0 22.0 163 98-265 20-185 (189)
15 3t5g_A GTP-binding protein RHE 100.0 2.2E-31 7.6E-36 217.0 21.6 166 98-269 4-173 (181)
16 3kkq_A RAS-related protein M-R 100.0 1.9E-31 6.4E-36 217.8 21.1 164 96-265 14-182 (183)
17 1z0f_A RAB14, member RAS oncog 100.0 1.4E-31 4.8E-36 217.1 19.6 163 98-265 13-178 (179)
18 1x3s_A RAS-related protein RAB 100.0 1.7E-31 6E-36 219.8 20.1 169 97-271 12-184 (195)
19 1z08_A RAS-related protein RAB 100.0 1.2E-31 4.1E-36 215.9 18.6 163 98-265 4-169 (170)
20 2iwr_A Centaurin gamma 1; ANK 100.0 1.5E-31 5.2E-36 217.4 19.0 161 98-267 5-171 (178)
21 2g6b_A RAS-related protein RAB 100.0 4.2E-31 1.4E-35 214.9 21.5 166 97-267 7-176 (180)
22 2il1_A RAB12; G-protein, GDP, 100.0 9.9E-32 3.4E-36 222.0 17.6 163 98-265 24-190 (192)
23 2efe_B Small GTP-binding prote 100.0 3.4E-31 1.2E-35 215.6 20.5 166 97-267 9-177 (181)
24 2nzj_A GTP-binding protein REM 100.0 2.2E-31 7.6E-36 215.3 19.2 162 99-265 3-169 (175)
25 3q85_A GTP-binding protein REM 100.0 1.9E-31 6.5E-36 214.7 18.7 162 100-266 2-168 (169)
26 3tkl_A RAS-related protein RAB 100.0 4.1E-31 1.4E-35 217.9 21.1 165 98-267 14-181 (196)
27 1ek0_A Protein (GTP-binding pr 100.0 2.1E-31 7.1E-36 214.1 18.8 164 99-265 2-169 (170)
28 1z2a_A RAS-related protein RAB 100.0 1.4E-31 4.9E-36 214.8 17.8 162 99-265 4-167 (168)
29 1r2q_A RAS-related protein RAB 100.0 2.7E-31 9.2E-36 213.4 19.2 163 98-265 4-169 (170)
30 1wms_A RAB-9, RAB9, RAS-relate 100.0 4.6E-31 1.6E-35 214.0 20.2 165 97-267 4-176 (177)
31 3dz8_A RAS-related protein RAB 100.0 1.3E-32 4.6E-37 226.8 11.2 164 98-266 21-187 (191)
32 1z0j_A RAB-22, RAS-related pro 100.0 6.6E-31 2.3E-35 211.3 20.8 163 98-265 4-169 (170)
33 2bcg_Y Protein YP2, GTP-bindin 100.0 1E-30 3.6E-35 217.8 22.3 165 98-267 6-173 (206)
34 2oil_A CATX-8, RAS-related pro 100.0 5.8E-31 2E-35 217.0 20.2 165 97-266 22-189 (193)
35 2atx_A Small GTP binding prote 100.0 7.8E-31 2.7E-35 216.4 21.0 168 97-265 15-193 (194)
36 1g16_A RAS-related protein SEC 100.0 3.5E-31 1.2E-35 212.9 18.4 161 100-266 3-166 (170)
37 2bme_A RAB4A, RAS-related prot 100.0 3.2E-31 1.1E-35 216.8 18.4 165 98-267 8-175 (186)
38 1mh1_A RAC1; GTP-binding, GTPa 100.0 4.2E-31 1.4E-35 215.8 19.0 168 98-269 3-184 (186)
39 1gwn_A RHO-related GTP-binding 100.0 1.7E-31 5.8E-36 223.3 16.9 167 98-265 26-204 (205)
40 2fg5_A RAB-22B, RAS-related pr 100.0 2.8E-31 9.6E-36 219.1 17.9 166 98-268 21-189 (192)
41 2o52_A RAS-related protein RAB 100.0 2E-31 6.9E-36 221.6 16.8 166 97-267 22-190 (200)
42 3oes_A GTPase rhebl1; small GT 100.0 2.2E-31 7.6E-36 221.3 16.9 167 97-269 21-191 (201)
43 2j0v_A RAC-like GTP-binding pr 100.0 3.8E-31 1.3E-35 221.4 18.3 168 98-270 7-185 (212)
44 3cpj_B GTP-binding protein YPT 100.0 7.1E-31 2.4E-35 221.9 20.0 168 98-270 11-181 (223)
45 2y8e_A RAB-protein 6, GH09086P 100.0 4.1E-31 1.4E-35 214.3 17.8 165 96-265 10-177 (179)
46 3q72_A GTP-binding protein RAD 100.0 4.6E-31 1.6E-35 211.8 17.7 160 100-265 2-164 (166)
47 1zbd_A Rabphilin-3A; G protein 100.0 1E-30 3.5E-35 217.2 20.3 163 99-266 7-172 (203)
48 2q3h_A RAS homolog gene family 100.0 7.5E-31 2.6E-35 217.7 19.4 169 97-266 17-196 (201)
49 1z06_A RAS-related protein RAB 100.0 4.6E-31 1.6E-35 217.1 17.7 161 99-264 19-187 (189)
50 2p5s_A RAS and EF-hand domain 100.0 3.3E-31 1.1E-35 219.9 16.8 168 98-265 26-197 (199)
51 1c1y_A RAS-related protein RAP 100.0 1.1E-30 3.7E-35 209.5 19.2 160 99-264 2-166 (167)
52 1u8z_A RAS-related protein RAL 100.0 9E-31 3.1E-35 209.7 18.5 161 99-265 3-167 (168)
53 4dsu_A GTPase KRAS, isoform 2B 100.0 1.8E-30 6E-35 212.6 20.4 166 99-270 3-171 (189)
54 2a9k_A RAS-related protein RAL 100.0 5.5E-31 1.9E-35 215.0 17.3 165 97-267 15-183 (187)
55 1m7b_A RND3/RHOE small GTP-bin 100.0 7.2E-31 2.5E-35 215.1 17.5 167 98-265 5-183 (184)
56 2fn4_A P23, RAS-related protei 100.0 1.7E-30 6E-35 211.0 19.6 164 97-266 6-173 (181)
57 3gj0_A GTP-binding nuclear pro 100.0 2.7E-31 9.3E-36 224.0 15.2 168 95-269 10-179 (221)
58 2cjw_A GTP-binding protein GEM 100.0 1.2E-30 4E-35 215.9 18.7 163 99-266 5-173 (192)
59 2bov_A RAla, RAS-related prote 100.0 1.6E-30 5.4E-35 216.1 19.1 164 97-266 11-178 (206)
60 3bc1_A RAS-related protein RAB 100.0 1.2E-30 4.2E-35 214.2 18.1 165 97-266 8-186 (195)
61 2f7s_A C25KG, RAS-related prot 100.0 1.8E-31 6.3E-36 224.1 13.2 165 98-267 23-201 (217)
62 4gzl_A RAS-related C3 botulinu 100.0 6.3E-31 2.2E-35 219.4 16.3 164 96-263 26-203 (204)
63 1vg8_A RAS-related protein RAB 100.0 8E-31 2.7E-35 218.2 16.7 165 98-268 6-178 (207)
64 2gco_A H9, RHO-related GTP-bin 100.0 4.4E-30 1.5E-34 213.6 20.9 164 98-265 23-200 (201)
65 2j1l_A RHO-related GTP-binding 100.0 1.5E-30 5E-35 218.7 18.2 167 98-268 32-212 (214)
66 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-30 7.1E-35 207.4 18.2 160 99-264 2-165 (167)
67 3l0i_B RAS-related protein RAB 100.0 4.2E-32 1.4E-36 225.4 8.2 165 97-266 30-197 (199)
68 2fv8_A H6, RHO-related GTP-bin 100.0 3.9E-30 1.3E-34 214.9 20.1 167 98-268 23-203 (207)
69 3clv_A RAB5 protein, putative; 100.0 5E-30 1.7E-34 211.9 20.0 160 99-265 6-204 (208)
70 3con_A GTPase NRAS; structural 100.0 5.3E-30 1.8E-34 210.6 19.9 162 98-266 19-184 (190)
71 1ky3_A GTP-binding protein YPT 100.0 2.2E-30 7.5E-35 210.5 16.9 165 98-266 6-179 (182)
72 2ce2_X GTPase HRAS; signaling 100.0 1.2E-29 4.2E-34 202.5 20.7 160 99-265 2-165 (166)
73 3cph_A RAS-related protein SEC 100.0 6E-30 2E-34 213.8 19.1 163 98-266 18-183 (213)
74 3bwd_D RAC-like GTP-binding pr 100.0 7.9E-31 2.7E-35 213.6 12.6 163 98-265 6-181 (182)
75 2yc2_C IFT27, small RAB-relate 100.0 8.7E-31 3E-35 217.8 12.9 166 98-267 18-194 (208)
76 2atv_A RERG, RAS-like estrogen 100.0 6.1E-30 2.1E-34 211.6 16.9 163 97-266 25-192 (196)
77 3t1o_A Gliding protein MGLA; G 100.0 9.8E-31 3.4E-35 215.5 11.4 165 96-267 10-194 (198)
78 4djt_A GTP-binding nuclear pro 100.0 8.2E-30 2.8E-34 214.2 16.8 169 96-269 7-179 (218)
79 2erx_A GTP-binding protein DI- 100.0 1.4E-29 4.7E-34 203.8 16.8 161 100-266 3-168 (172)
80 3llu_A RAS-related GTP-binding 100.0 3.8E-30 1.3E-34 213.1 13.6 163 96-264 16-196 (196)
81 2gf0_A GTP-binding protein DI- 100.0 2E-29 6.9E-34 208.3 16.8 163 99-268 7-174 (199)
82 2zej_A Dardarin, leucine-rich 100.0 8.9E-30 3E-34 208.8 10.2 164 100-268 2-181 (184)
83 4bas_A ADP-ribosylation factor 100.0 4.8E-29 1.7E-33 206.0 14.5 162 98-266 15-190 (199)
84 1upt_A ARL1, ADP-ribosylation 100.0 6.4E-29 2.2E-33 200.0 14.2 161 99-266 6-170 (171)
85 1zj6_A ADP-ribosylation factor 100.0 6.3E-29 2.2E-33 203.9 14.4 160 99-269 15-182 (187)
86 1r8s_A ADP-ribosylation factor 100.0 3E-29 1E-33 200.8 12.1 158 101-265 1-162 (164)
87 2h57_A ADP-ribosylation factor 100.0 2.3E-28 7.9E-33 201.0 17.4 156 99-265 20-187 (190)
88 2h17_A ADP-ribosylation factor 100.0 3.5E-29 1.2E-33 204.5 11.5 153 99-262 20-180 (181)
89 1f6b_A SAR1; gtpases, N-termin 100.0 1.6E-28 5.4E-33 204.0 15.6 154 99-263 24-197 (198)
90 2b6h_A ADP-ribosylation factor 100.0 9.2E-29 3.1E-33 204.3 13.6 162 97-265 26-191 (192)
91 1zd9_A ADP-ribosylation factor 100.0 2.9E-29 9.9E-34 206.3 10.3 157 99-265 21-185 (188)
92 1m2o_B GTP-binding protein SAR 100.0 3.7E-28 1.3E-32 200.4 16.4 154 98-262 21-189 (190)
93 1fzq_A ADP-ribosylation factor 100.0 4.6E-29 1.6E-33 204.2 10.8 157 99-266 15-179 (181)
94 1oix_A RAS-related protein RAB 100.0 3.2E-27 1.1E-31 195.0 20.3 161 98-263 27-190 (191)
95 2f9l_A RAB11B, member RAS onco 100.0 3.7E-27 1.3E-31 195.6 19.7 163 99-266 4-169 (199)
96 2x77_A ADP-ribosylation factor 100.0 2.6E-28 8.8E-33 200.4 12.6 161 99-266 21-185 (189)
97 3th5_A RAS-related C3 botulinu 99.9 2.1E-30 7.3E-35 215.7 0.0 166 97-263 27-203 (204)
98 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-27 5.9E-32 212.0 18.6 166 100-266 155-331 (332)
99 1ksh_A ARF-like protein 2; sma 100.0 6.5E-28 2.2E-32 197.4 14.5 158 98-266 16-181 (186)
100 1moz_A ARL1, ADP-ribosylation 100.0 4.4E-28 1.5E-32 197.6 11.1 156 99-265 17-180 (183)
101 3r7w_B Gtpase2, GTP-binding pr 99.9 6.5E-29 2.2E-33 219.7 6.1 166 102-276 1-185 (331)
102 3c5h_A Glucocorticoid receptor 99.9 3.7E-28 1.3E-32 209.8 9.8 160 98-264 17-254 (255)
103 2wji_A Ferrous iron transport 99.9 4.6E-27 1.6E-31 189.3 13.7 152 99-263 2-163 (165)
104 2fh5_B SR-beta, signal recogni 99.9 5E-27 1.7E-31 196.6 14.2 160 98-262 5-213 (214)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 6.7E-27 2.3E-31 207.2 13.6 164 99-269 2-185 (307)
106 3o47_A ADP-ribosylation factor 99.9 5.6E-27 1.9E-31 209.7 12.8 162 98-266 163-328 (329)
107 3lvq_E ARF-GAP with SH3 domain 99.9 2E-26 6.8E-31 216.9 11.7 161 96-267 318-486 (497)
108 2wjg_A FEOB, ferrous iron tran 99.9 9.2E-26 3.1E-30 184.7 13.4 157 98-267 5-171 (188)
109 2lkc_A Translation initiation 99.9 2.4E-25 8.1E-30 180.4 15.4 157 98-267 6-173 (178)
110 2qu8_A Putative nucleolar GTP- 99.9 2.8E-25 9.7E-30 188.2 15.7 165 99-268 28-208 (228)
111 1lnz_A SPO0B-associated GTP-bi 99.9 9.8E-26 3.3E-30 202.1 13.4 202 43-268 111-333 (342)
112 3dpu_A RAB family protein; roc 99.9 6.6E-26 2.2E-30 215.2 10.2 165 96-268 37-211 (535)
113 2gj8_A MNME, tRNA modification 99.9 5.5E-26 1.9E-30 184.4 7.1 151 100-265 4-166 (172)
114 1svi_A GTP-binding protein YSX 99.9 1.1E-24 3.7E-29 179.3 11.2 155 99-264 22-194 (195)
115 2dyk_A GTP-binding protein; GT 99.9 1.5E-24 5.2E-29 172.6 11.7 148 101-263 2-160 (161)
116 3pqc_A Probable GTP-binding pr 99.9 4.7E-24 1.6E-28 175.0 13.9 156 99-265 22-194 (195)
117 3iev_A GTP-binding protein ERA 99.9 1.3E-23 4.6E-28 186.1 16.9 171 99-277 9-194 (308)
118 3a1s_A Iron(II) transport prot 99.9 8.1E-24 2.8E-28 182.9 14.6 154 98-264 3-166 (258)
119 2cxx_A Probable GTP-binding pr 99.9 1E-24 3.6E-29 178.4 8.3 153 101-267 2-186 (190)
120 3iby_A Ferrous iron transport 99.9 9.3E-24 3.2E-28 182.3 9.6 149 101-262 2-164 (256)
121 3b1v_A Ferrous iron uptake tra 99.9 1.4E-23 4.9E-28 182.6 10.1 151 100-264 3-163 (272)
122 3i8s_A Ferrous iron transport 99.9 1.2E-23 4.3E-28 183.3 9.0 155 99-266 2-170 (274)
123 2hjg_A GTP-binding protein ENG 99.9 3.4E-23 1.1E-27 191.9 10.8 247 4-265 72-349 (436)
124 1wf3_A GTP-binding protein; GT 99.9 2.9E-22 9.9E-27 176.9 15.5 162 98-271 5-179 (301)
125 3k53_A Ferrous iron transport 99.9 1.9E-22 6.4E-27 175.5 13.3 157 99-267 2-168 (271)
126 4dcu_A GTP-binding protein ENG 99.9 1.9E-22 6.5E-27 187.9 13.0 247 4-265 92-369 (456)
127 4dhe_A Probable GTP-binding pr 99.9 8.6E-23 2.9E-27 171.7 9.5 161 99-267 28-213 (223)
128 3gee_A MNME, tRNA modification 99.9 1.1E-21 3.9E-26 182.8 15.3 154 100-264 233-397 (476)
129 1nrj_B SR-beta, signal recogni 99.9 3.5E-23 1.2E-27 173.6 4.5 145 98-251 10-170 (218)
130 3qq5_A Small GTP-binding prote 99.9 5.2E-22 1.8E-26 182.4 9.5 156 98-266 32-197 (423)
131 1mky_A Probable GTP-binding pr 99.8 7.9E-21 2.7E-25 176.1 15.0 150 101-266 2-167 (439)
132 1udx_A The GTP-binding protein 99.8 1.5E-20 5E-25 172.3 16.2 203 43-268 110-328 (416)
133 2e87_A Hypothetical protein PH 99.8 4.4E-20 1.5E-24 166.7 19.1 158 99-265 166-336 (357)
134 1xzp_A Probable tRNA modificat 99.8 1.1E-20 3.8E-25 176.4 13.3 151 100-265 243-405 (482)
135 3sjy_A Translation initiation 99.8 7.2E-20 2.5E-24 167.9 16.4 164 98-265 6-192 (403)
136 1ega_A Protein (GTP-binding pr 99.8 6.6E-20 2.3E-24 161.8 13.7 164 98-272 6-182 (301)
137 1wb1_A Translation elongation 99.8 5.8E-20 2E-24 172.0 12.9 158 96-264 15-188 (482)
138 1cip_A Protein (guanine nucleo 99.8 3.4E-20 1.1E-24 166.7 10.7 121 146-266 192-345 (353)
139 1mky_A Probable GTP-binding pr 99.8 1.8E-19 6.3E-24 166.9 14.4 250 4-265 71-355 (439)
140 2hjg_A GTP-binding protein ENG 99.8 1E-20 3.6E-25 175.2 5.8 154 100-266 3-166 (436)
141 2xtp_A GTPase IMAP family memb 99.8 1.4E-19 4.7E-24 156.1 12.5 162 98-267 20-210 (260)
142 3geh_A MNME, tRNA modification 99.8 4.5E-20 1.5E-24 171.5 9.9 152 100-267 224-386 (462)
143 1s0u_A EIF-2-gamma, translatio 99.8 8.6E-19 2.9E-23 160.9 17.2 159 99-265 7-198 (408)
144 2qtf_A Protein HFLX, GTP-bindi 99.8 4.9E-19 1.7E-23 159.9 14.7 161 100-267 178-356 (364)
145 3t5d_A Septin-7; GTP-binding p 99.8 6.6E-20 2.3E-24 159.6 8.1 159 99-263 7-202 (274)
146 3ohm_A Guanine nucleotide-bind 99.8 7E-20 2.4E-24 162.6 7.5 122 146-267 166-320 (327)
147 3lxx_A GTPase IMAP family memb 99.8 9E-19 3.1E-23 149.2 13.7 163 97-266 26-215 (239)
148 2ged_A SR-beta, signal recogni 99.8 1.4E-19 4.7E-24 148.5 8.3 108 98-214 46-168 (193)
149 3cb4_D GTP-binding protein LEP 99.8 9.2E-19 3.2E-23 167.1 14.6 157 100-266 4-183 (599)
150 2qag_A Septin-2, protein NEDD5 99.8 4.6E-20 1.6E-24 166.7 5.3 161 99-266 36-234 (361)
151 4fid_A G protein alpha subunit 99.8 3.6E-19 1.2E-23 158.5 10.2 121 145-265 159-328 (340)
152 1kk1_A EIF2gamma; initiation o 99.8 2.4E-18 8E-23 158.1 15.6 161 97-265 7-200 (410)
153 3izy_P Translation initiation 99.8 1.4E-20 4.8E-25 177.3 0.6 160 99-266 3-169 (537)
154 3p26_A Elongation factor 1 alp 99.8 2.4E-19 8.3E-24 168.0 8.9 156 98-254 31-227 (483)
155 1jny_A EF-1-alpha, elongation 99.8 3.9E-20 1.3E-24 171.2 3.2 156 99-257 5-205 (435)
156 3j2k_7 ERF3, eukaryotic polype 99.8 2E-18 6.8E-23 159.9 14.4 156 98-257 15-217 (439)
157 2ywe_A GTP-binding protein LEP 99.8 2.4E-18 8.2E-23 164.0 13.9 158 99-266 5-185 (600)
158 3lxw_A GTPase IMAP family memb 99.8 3.1E-18 1E-22 146.9 12.7 163 99-266 20-209 (247)
159 2c78_A Elongation factor TU-A; 99.8 5.5E-19 1.9E-23 162.1 7.6 161 98-264 9-211 (405)
160 4dcu_A GTP-binding protein ENG 99.8 2.3E-19 8E-24 167.0 5.0 155 98-265 21-185 (456)
161 1pui_A ENGB, probable GTP-bind 99.8 3E-18 1E-22 142.4 11.1 157 100-267 26-201 (210)
162 1u0l_A Probable GTPase ENGC; p 99.8 1.9E-18 6.5E-23 152.4 10.3 131 115-260 32-168 (301)
163 1zun_B Sulfate adenylate trans 99.8 1.4E-18 4.8E-23 160.8 9.4 154 98-256 22-215 (434)
164 1g7s_A Translation initiation 99.8 5.3E-18 1.8E-22 161.9 13.0 160 99-264 4-217 (594)
165 1d2e_A Elongation factor TU (E 99.7 1.7E-18 5.7E-23 158.5 8.9 160 100-265 3-195 (397)
166 3tr5_A RF-3, peptide chain rel 99.7 4.6E-18 1.6E-22 160.4 11.8 111 99-214 12-146 (528)
167 1r5b_A Eukaryotic peptide chai 99.7 3.4E-19 1.2E-23 166.2 3.8 157 98-256 41-243 (467)
168 3izq_1 HBS1P, elongation facto 99.7 2.8E-18 9.5E-23 164.6 7.8 156 97-255 164-362 (611)
169 2elf_A Protein translation elo 99.7 1.1E-17 3.6E-22 151.6 10.9 146 102-265 23-180 (370)
170 1f60_A Elongation factor EEF1A 99.7 2E-18 7E-23 160.6 5.4 153 98-255 5-202 (458)
171 1zo1_I IF2, translation initia 99.7 5E-19 1.7E-23 165.4 1.2 155 99-262 3-164 (501)
172 2qnr_A Septin-2, protein NEDD5 99.7 2.1E-18 7.1E-23 152.2 5.0 162 99-267 17-216 (301)
173 2xtz_A Guanine nucleotide-bind 99.7 8.7E-18 3E-22 151.0 8.9 122 145-266 181-346 (354)
174 1azs_C GS-alpha; complex (lyas 99.7 1.9E-17 6.5E-22 150.6 10.6 133 130-266 204-386 (402)
175 3avx_A Elongation factor TS, e 99.7 1.8E-17 6E-22 165.8 8.8 162 97-264 293-485 (1289)
176 2aka_B Dynamin-1; fusion prote 99.7 6.1E-18 2.1E-22 148.4 3.5 157 99-262 25-250 (299)
177 1zcb_A G alpha I/13; GTP-bindi 99.7 6.5E-17 2.2E-21 145.8 9.6 134 129-266 187-354 (362)
178 3mca_A HBS1, elongation factor 99.7 4.8E-18 1.7E-22 162.5 1.6 152 97-253 174-371 (592)
179 1wxq_A GTP-binding protein; st 99.7 3.3E-17 1.1E-21 149.6 4.8 83 101-183 1-114 (397)
180 3def_A T7I23.11 protein; chlor 99.7 1.2E-15 4.1E-20 131.7 14.2 113 99-214 35-163 (262)
181 2dy1_A Elongation factor G; tr 99.7 4.6E-16 1.6E-20 150.9 12.7 113 99-214 8-138 (665)
182 2qag_C Septin-7; cell cycle, c 99.6 1.5E-16 5E-21 145.9 7.7 159 99-263 30-225 (418)
183 1h65_A Chloroplast outer envel 99.6 1.6E-15 5.4E-20 131.5 11.2 113 99-214 38-166 (270)
184 2j69_A Bacterial dynamin-like 99.6 3E-16 1E-20 152.8 6.8 166 100-267 69-327 (695)
185 1dar_A EF-G, elongation factor 99.6 2.7E-15 9.3E-20 145.9 13.0 113 98-215 10-142 (691)
186 2h5e_A Peptide chain release f 99.6 2.4E-15 8.3E-20 141.9 12.0 114 99-215 12-147 (529)
187 2rdo_7 EF-G, elongation factor 99.6 1E-14 3.5E-19 142.1 14.0 114 99-215 9-147 (704)
188 3t34_A Dynamin-related protein 99.6 8.8E-16 3E-20 138.6 5.2 105 148-259 137-255 (360)
189 2xex_A Elongation factor G; GT 99.6 1E-14 3.4E-19 142.0 12.4 112 99-215 9-140 (693)
190 1jwy_B Dynamin A GTPase domain 99.6 5E-15 1.7E-19 130.8 8.9 115 147-268 131-265 (315)
191 1jal_A YCHF protein; nucleotid 99.6 3.2E-14 1.1E-18 127.7 14.3 144 100-248 2-240 (363)
192 2hf9_A Probable hydrogenase ni 99.6 7.8E-18 2.7E-22 141.7 -8.8 151 100-265 38-224 (226)
193 2wsm_A Hydrogenase expression/ 99.5 9.2E-15 3.1E-19 122.4 7.4 152 100-266 30-215 (221)
194 3p32_A Probable GTPase RV1496/ 99.5 1.6E-14 5.5E-19 130.1 6.5 103 147-265 172-284 (355)
195 2x2e_A Dynamin-1; nitration, h 99.5 1.2E-15 4.2E-20 137.3 -0.9 154 100-261 31-254 (353)
196 2dby_A GTP-binding protein; GD 99.5 6.6E-14 2.3E-18 126.3 10.2 155 101-257 2-254 (368)
197 1n0u_A EF-2, elongation factor 99.5 9.6E-14 3.3E-18 137.7 10.9 113 99-214 18-162 (842)
198 2yv5_A YJEQ protein; hydrolase 99.4 1.5E-12 5E-17 114.7 10.5 98 156-260 65-164 (302)
199 2www_A Methylmalonic aciduria 99.3 4.4E-13 1.5E-17 120.4 5.1 101 147-263 167-277 (349)
200 2qpt_A EH domain-containing pr 99.3 1.2E-12 4.1E-17 124.2 7.5 113 100-214 65-230 (550)
201 2p67_A LAO/AO transport system 99.3 7.2E-13 2.5E-17 118.6 4.5 105 147-264 149-260 (341)
202 1yrb_A ATP(GTP)binding protein 99.3 1.2E-11 4.2E-16 106.0 10.8 113 147-264 109-256 (262)
203 3vqt_A RF-3, peptide chain rel 99.3 1.4E-11 4.9E-16 116.7 12.1 111 99-214 30-164 (548)
204 4a9a_A Ribosome-interacting GT 99.2 1.2E-10 4.1E-15 105.1 13.7 154 100-257 72-240 (376)
205 2ohf_A Protein OLA1, GTP-bindi 99.1 2.8E-11 9.5E-16 109.7 5.1 86 100-185 22-131 (396)
206 3j25_A Tetracycline resistance 99.1 2.6E-11 9E-16 117.0 4.1 111 101-214 3-131 (638)
207 3zvr_A Dynamin-1; hydrolase, D 99.1 4.8E-11 1.6E-15 116.1 5.7 155 98-262 49-275 (772)
208 2qm8_A GTPase/ATPase; G protei 99.1 4.6E-10 1.6E-14 100.2 10.8 103 147-264 148-260 (337)
209 4fn5_A EF-G 1, elongation fact 99.1 1.6E-09 5.6E-14 105.7 14.3 112 100-214 13-149 (709)
210 3l82_B F-box only protein 4; T 99.1 5.7E-11 1.9E-15 97.8 3.1 105 154-266 109-224 (227)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 1.9E-09 6.6E-14 97.7 12.8 83 100-182 20-127 (392)
212 3h2y_A GTPase family protein; 99.0 4.7E-10 1.6E-14 101.3 7.4 100 156-263 55-158 (368)
213 3l2o_B F-box only protein 4; s 98.9 7E-10 2.4E-14 95.6 4.9 105 154-266 194-309 (312)
214 3ec1_A YQEH GTPase; atnos1, at 98.9 1.4E-09 4.8E-14 98.2 6.4 101 156-264 57-161 (369)
215 2qag_B Septin-6, protein NEDD5 98.4 4.1E-07 1.4E-11 83.1 7.8 141 100-247 42-218 (427)
216 2j37_W Signal recognition part 98.4 1.2E-07 4E-12 88.7 3.8 148 100-262 101-310 (504)
217 1puj_A YLQF, conserved hypothe 98.4 4.2E-07 1.4E-11 78.9 6.6 98 153-264 5-105 (282)
218 1tq4_A IIGP1, interferon-induc 98.3 3.6E-06 1.2E-10 76.8 11.3 161 101-268 70-256 (413)
219 3sop_A Neuronal-specific septi 98.2 1.8E-06 6.1E-11 74.5 6.6 137 100-243 2-178 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.2 2E-07 6.8E-12 84.1 0.4 137 101-251 163-317 (369)
221 3cnl_A YLQF, putative uncharac 98.1 1E-06 3.6E-11 75.6 2.7 56 101-159 100-156 (262)
222 3h2y_A GTPase family protein; 98.0 3.5E-07 1.2E-11 82.4 -1.4 132 101-246 161-311 (368)
223 1bif_A 6-phosphofructo-2-kinas 98.0 7.8E-08 2.7E-12 89.5 -7.2 101 99-200 38-149 (469)
224 1puj_A YLQF, conserved hypothe 98.0 4.9E-06 1.7E-10 72.1 4.4 39 1-39 10-48 (282)
225 3dm5_A SRP54, signal recogniti 97.9 2.1E-05 7.1E-10 72.2 7.5 92 147-254 183-280 (443)
226 3cnl_A YLQF, putative uncharac 97.8 1E-05 3.5E-10 69.3 4.0 90 155-261 5-97 (262)
227 1t9h_A YLOQ, probable GTPase E 97.7 2.8E-05 9.6E-10 68.1 4.7 93 161-258 77-170 (307)
228 2v3c_C SRP54, signal recogniti 97.6 4.9E-05 1.7E-09 69.7 5.5 84 147-245 181-272 (432)
229 1j8m_F SRP54, signal recogniti 97.6 6.4E-05 2.2E-09 65.5 5.8 93 146-255 180-281 (297)
230 3kl4_A SRP54, signal recogniti 97.5 7.9E-05 2.7E-09 68.2 5.2 90 147-252 180-277 (433)
231 1f5n_A Interferon-induced guan 97.3 0.00014 5E-09 69.0 4.4 60 98-159 36-103 (592)
232 2rcn_A Probable GTPase ENGC; Y 97.3 0.0011 3.8E-08 59.1 9.7 86 167-258 127-212 (358)
233 3e70_C DPA, signal recognition 97.2 0.00017 5.7E-09 63.8 3.3 91 149-255 214-310 (328)
234 4dzz_A Plasmid partitioning pr 96.7 0.0025 8.4E-08 51.5 6.1 84 147-242 76-162 (206)
235 3cwq_A Para family chromosome 96.6 0.0022 7.5E-08 52.6 4.8 85 147-242 68-153 (209)
236 2xxa_A Signal recognition part 96.4 0.0039 1.3E-07 57.1 5.6 63 146-214 183-252 (433)
237 3end_A Light-independent proto 96.4 0.022 7.4E-07 49.2 10.2 84 146-243 156-242 (307)
238 3szr_A Interferon-induced GTP- 96.2 0.0031 1E-07 60.3 4.0 21 102-122 47-68 (608)
239 3q5d_A Atlastin-1; G protein, 96.1 0.0043 1.5E-07 56.9 4.2 62 98-159 65-152 (447)
240 1ye8_A Protein THEP1, hypothet 95.9 0.0037 1.3E-07 50.0 2.5 20 102-121 2-22 (178)
241 1kgd_A CASK, peripheral plasma 95.6 0.0051 1.8E-07 49.0 2.3 20 102-121 7-27 (180)
242 1lvg_A Guanylate kinase, GMP k 95.4 0.0064 2.2E-07 49.3 2.3 20 102-121 6-26 (198)
243 4gp7_A Metallophosphoesterase; 95.2 0.0088 3E-07 47.2 2.5 20 102-121 11-31 (171)
244 1zp6_A Hypothetical protein AT 95.1 0.0088 3E-07 47.7 2.4 21 102-122 11-32 (191)
245 1ex7_A Guanylate kinase; subst 95.1 0.0099 3.4E-07 47.9 2.5 20 103-122 4-24 (186)
246 3ney_A 55 kDa erythrocyte memb 95.1 0.01 3.5E-07 48.3 2.6 23 100-122 19-42 (197)
247 3tr0_A Guanylate kinase, GMP k 95.1 0.009 3.1E-07 48.1 2.3 20 102-121 9-29 (205)
248 3a00_A Guanylate kinase, GMP k 95.1 0.0089 3E-07 47.8 2.2 19 103-121 4-23 (186)
249 1s96_A Guanylate kinase, GMP k 94.9 0.011 3.7E-07 48.9 2.3 21 102-122 18-39 (219)
250 3tau_A Guanylate kinase, GMP k 94.9 0.011 3.9E-07 48.1 2.3 21 102-122 10-31 (208)
251 1znw_A Guanylate kinase, GMP k 94.8 0.011 3.9E-07 48.0 2.3 20 102-121 22-42 (207)
252 1z6g_A Guanylate kinase; struc 94.8 0.012 4E-07 48.5 2.3 20 102-121 25-45 (218)
253 3c8u_A Fructokinase; YP_612366 94.7 0.013 4.5E-07 47.7 2.3 22 100-121 22-44 (208)
254 3lw7_A Adenylate kinase relate 94.5 0.017 5.7E-07 44.9 2.5 18 102-119 3-21 (179)
255 3kb2_A SPBC2 prophage-derived 94.5 0.016 5.6E-07 45.0 2.4 20 102-121 3-23 (173)
256 2qor_A Guanylate kinase; phosp 94.5 0.017 5.7E-07 46.8 2.5 21 101-121 13-34 (204)
257 1ly1_A Polynucleotide kinase; 94.5 0.017 5.9E-07 45.2 2.5 21 101-121 3-24 (181)
258 1htw_A HI0065; nucleotide-bind 94.5 0.016 5.6E-07 45.2 2.3 21 102-122 35-56 (158)
259 2i3b_A HCR-ntpase, human cance 94.4 0.016 5.4E-07 46.8 2.1 20 102-121 3-23 (189)
260 2j41_A Guanylate kinase; GMP, 94.4 0.017 5.8E-07 46.5 2.3 22 101-122 7-29 (207)
261 3fb4_A Adenylate kinase; psych 94.4 0.02 6.8E-07 46.6 2.6 20 101-120 1-21 (216)
262 1kag_A SKI, shikimate kinase I 94.4 0.018 6.2E-07 45.0 2.3 21 101-121 5-26 (173)
263 3dl0_A Adenylate kinase; phosp 94.3 0.02 6.8E-07 46.6 2.6 20 101-120 1-21 (216)
264 2bdt_A BH3686; alpha-beta prot 94.3 0.018 6E-07 45.9 2.3 20 102-121 4-24 (189)
265 4ido_A Atlastin-1; GTPase, GTP 94.3 0.048 1.6E-06 49.9 5.3 60 100-159 67-152 (457)
266 3tif_A Uncharacterized ABC tra 94.3 0.02 6.8E-07 47.8 2.6 20 102-121 33-53 (235)
267 2bbw_A Adenylate kinase 4, AK4 94.3 0.022 7.7E-07 47.5 2.8 20 101-120 28-48 (246)
268 4eun_A Thermoresistant glucoki 94.2 0.02 6.8E-07 46.2 2.3 21 101-121 30-51 (200)
269 1kht_A Adenylate kinase; phosp 94.2 0.024 8.2E-07 44.9 2.7 21 101-121 4-25 (192)
270 3sr0_A Adenylate kinase; phosp 94.1 0.022 7.5E-07 46.6 2.5 21 101-121 1-22 (206)
271 3ec2_A DNA replication protein 94.1 0.017 5.8E-07 45.6 1.8 21 101-121 39-60 (180)
272 2jaq_A Deoxyguanosine kinase; 94.1 0.023 7.8E-07 45.5 2.5 20 102-121 2-22 (205)
273 2cdn_A Adenylate kinase; phosp 94.1 0.028 9.5E-07 45.3 3.0 22 100-121 20-42 (201)
274 3vaa_A Shikimate kinase, SK; s 94.1 0.024 8.1E-07 45.7 2.5 20 101-120 26-46 (199)
275 3t61_A Gluconokinase; PSI-biol 94.1 0.022 7.4E-07 46.0 2.3 21 101-121 19-40 (202)
276 2pcj_A ABC transporter, lipopr 94.1 0.023 7.8E-07 47.0 2.4 20 102-121 32-52 (224)
277 1nks_A Adenylate kinase; therm 94.0 0.027 9.1E-07 44.6 2.7 20 102-121 3-23 (194)
278 1tev_A UMP-CMP kinase; ploop, 94.0 0.03 1E-06 44.4 2.9 21 100-120 3-24 (196)
279 2ehv_A Hypothetical protein PH 94.0 0.025 8.4E-07 46.9 2.5 19 102-120 32-51 (251)
280 1qhx_A CPT, protein (chloramph 94.0 0.026 8.8E-07 44.3 2.5 21 101-121 4-25 (178)
281 1np6_A Molybdopterin-guanine d 93.9 0.025 8.5E-07 45.0 2.3 21 102-122 8-29 (174)
282 2onk_A Molybdate/tungstate ABC 93.9 0.026 9E-07 47.3 2.6 20 102-121 26-46 (240)
283 1b0u_A Histidine permease; ABC 93.9 0.027 9.1E-07 47.9 2.6 20 102-121 34-54 (262)
284 2rcn_A Probable GTPase ENGC; Y 93.9 0.026 9E-07 50.2 2.6 23 102-124 217-240 (358)
285 1sgw_A Putative ABC transporte 93.9 0.028 9.7E-07 46.2 2.6 20 102-121 37-57 (214)
286 2chg_A Replication factor C sm 93.9 0.042 1.4E-06 44.1 3.7 19 103-121 41-60 (226)
287 2xtz_A Guanine nucleotide-bind 93.9 0.042 1.4E-06 48.8 3.9 26 94-119 3-29 (354)
288 1knq_A Gluconate kinase; ALFA/ 93.8 0.033 1.1E-06 43.7 2.9 20 101-120 9-29 (175)
289 3cm0_A Adenylate kinase; ATP-b 93.8 0.035 1.2E-06 43.9 3.1 21 100-120 4-25 (186)
290 2cbz_A Multidrug resistance-as 93.8 0.031 1E-06 46.7 2.8 20 102-121 33-53 (237)
291 4a74_A DNA repair and recombin 93.8 0.024 8.1E-07 46.3 2.1 20 102-121 27-47 (231)
292 1mv5_A LMRA, multidrug resista 93.8 0.032 1.1E-06 46.8 2.9 20 102-121 30-50 (243)
293 2plr_A DTMP kinase, probable t 93.8 0.034 1.2E-06 44.8 3.0 22 100-121 4-26 (213)
294 3gfo_A Cobalt import ATP-bindi 93.8 0.029 9.9E-07 48.0 2.6 20 102-121 36-56 (275)
295 3co5_A Putative two-component 93.8 0.11 3.6E-06 39.5 5.6 19 102-120 29-48 (143)
296 2ff7_A Alpha-hemolysin translo 93.8 0.032 1.1E-06 46.9 2.8 20 102-121 37-57 (247)
297 2if2_A Dephospho-COA kinase; a 93.7 0.028 9.5E-07 45.3 2.3 21 101-121 2-23 (204)
298 1g6h_A High-affinity branched- 93.7 0.03 1E-06 47.3 2.6 20 102-121 35-55 (257)
299 3asz_A Uridine kinase; cytidin 93.7 0.029 9.9E-07 45.4 2.3 22 100-121 6-28 (211)
300 1e4v_A Adenylate kinase; trans 93.7 0.031 1E-06 45.6 2.5 21 101-121 1-22 (214)
301 1jbk_A CLPB protein; beta barr 93.6 0.03 1E-06 43.9 2.3 21 102-122 45-66 (195)
302 2pze_A Cystic fibrosis transme 93.6 0.035 1.2E-06 46.0 2.9 20 102-121 36-56 (229)
303 4g1u_C Hemin import ATP-bindin 93.6 0.032 1.1E-06 47.5 2.6 20 102-121 39-59 (266)
304 3trf_A Shikimate kinase, SK; a 93.6 0.034 1.2E-06 43.9 2.7 20 101-120 6-26 (185)
305 2olj_A Amino acid ABC transpor 93.6 0.032 1.1E-06 47.4 2.6 20 102-121 52-72 (263)
306 2rhm_A Putative kinase; P-loop 93.6 0.036 1.2E-06 44.0 2.7 21 101-121 6-27 (193)
307 1zcb_A G alpha I/13; GTP-bindi 93.6 0.035 1.2E-06 49.5 2.9 22 98-119 31-53 (362)
308 3lnc_A Guanylate kinase, GMP k 93.6 0.023 7.9E-07 46.9 1.6 19 102-120 29-48 (231)
309 3uie_A Adenylyl-sulfate kinase 93.6 0.03 1E-06 45.1 2.3 21 101-121 26-47 (200)
310 1ji0_A ABC transporter; ATP bi 93.6 0.033 1.1E-06 46.6 2.6 20 102-121 34-54 (240)
311 3b85_A Phosphate starvation-in 93.5 0.027 9.1E-07 46.1 1.9 21 102-122 24-45 (208)
312 2qi9_C Vitamin B12 import ATP- 93.5 0.035 1.2E-06 46.8 2.6 20 102-121 28-48 (249)
313 2eyu_A Twitching motility prot 93.5 0.03 1E-06 47.5 2.2 20 102-121 27-47 (261)
314 1vpl_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 47.0 2.6 20 102-121 43-63 (256)
315 2f1r_A Molybdopterin-guanine d 93.5 0.018 6.3E-07 45.6 0.8 20 102-121 4-24 (171)
316 2ghi_A Transport protein; mult 93.5 0.038 1.3E-06 46.8 2.8 20 102-121 48-68 (260)
317 3n70_A Transport activator; si 93.5 0.13 4.4E-06 39.1 5.6 21 101-121 25-46 (145)
318 3tlx_A Adenylate kinase 2; str 93.4 0.04 1.4E-06 46.0 2.9 22 100-121 29-51 (243)
319 2ixe_A Antigen peptide transpo 93.4 0.035 1.2E-06 47.3 2.6 20 102-121 47-67 (271)
320 2v9p_A Replication protein E1; 93.4 0.033 1.1E-06 48.4 2.4 19 102-120 128-147 (305)
321 1cke_A CK, MSSA, protein (cyti 93.4 0.036 1.2E-06 45.3 2.5 21 101-121 6-27 (227)
322 2d2e_A SUFC protein; ABC-ATPas 93.4 0.036 1.2E-06 46.7 2.5 20 102-121 31-51 (250)
323 2ihy_A ABC transporter, ATP-bi 93.4 0.041 1.4E-06 47.2 2.9 20 102-121 49-69 (279)
324 1lw7_A Transcriptional regulat 93.3 0.033 1.1E-06 49.5 2.3 22 100-121 170-192 (365)
325 1uj2_A Uridine-cytidine kinase 93.3 0.042 1.4E-06 46.1 2.8 23 99-121 21-44 (252)
326 2zu0_C Probable ATP-dependent 93.3 0.038 1.3E-06 47.0 2.6 20 102-121 48-68 (267)
327 1aky_A Adenylate kinase; ATP:A 93.3 0.04 1.4E-06 45.0 2.7 21 100-120 4-25 (220)
328 1y63_A LMAJ004144AAA protein; 93.3 0.044 1.5E-06 43.5 2.8 22 100-121 10-32 (184)
329 1u0l_A Probable GTPase ENGC; p 93.3 0.037 1.3E-06 47.9 2.5 22 102-123 171-193 (301)
330 1ukz_A Uridylate kinase; trans 93.2 0.056 1.9E-06 43.4 3.4 20 101-120 16-36 (203)
331 2nq2_C Hypothetical ABC transp 93.2 0.04 1.4E-06 46.5 2.6 20 102-121 33-53 (253)
332 1zd8_A GTP:AMP phosphotransfer 93.2 0.04 1.4E-06 45.3 2.5 20 101-120 8-28 (227)
333 1jjv_A Dephospho-COA kinase; P 93.2 0.048 1.6E-06 44.0 2.9 21 101-121 3-24 (206)
334 2pt5_A Shikimate kinase, SK; a 93.2 0.045 1.5E-06 42.4 2.7 20 102-121 2-22 (168)
335 1via_A Shikimate kinase; struc 93.2 0.039 1.3E-06 43.3 2.3 19 102-120 6-25 (175)
336 3iij_A Coilin-interacting nucl 93.2 0.045 1.5E-06 43.1 2.7 20 101-120 12-32 (180)
337 2yz2_A Putative ABC transporte 93.2 0.041 1.4E-06 46.8 2.6 20 102-121 35-55 (266)
338 1xjc_A MOBB protein homolog; s 93.1 0.044 1.5E-06 43.3 2.5 20 102-121 6-26 (169)
339 1rj9_A FTSY, signal recognitio 93.1 0.038 1.3E-06 48.0 2.3 83 149-245 187-281 (304)
340 1gvn_B Zeta; postsegregational 93.1 0.049 1.7E-06 46.8 3.0 21 101-121 34-55 (287)
341 2pjz_A Hypothetical protein ST 93.1 0.048 1.6E-06 46.3 2.9 20 102-121 32-52 (263)
342 2kjq_A DNAA-related protein; s 93.1 0.032 1.1E-06 43.0 1.6 21 101-121 37-58 (149)
343 1t9h_A YLOQ, probable GTPase E 93.0 0.019 6.6E-07 50.0 0.3 23 101-123 174-197 (307)
344 2w0m_A SSO2452; RECA, SSPF, un 93.0 0.04 1.4E-06 44.9 2.3 20 102-121 25-45 (235)
345 2xb4_A Adenylate kinase; ATP-b 93.0 0.048 1.6E-06 44.8 2.7 19 102-120 2-21 (223)
346 3aez_A Pantothenate kinase; tr 93.0 0.04 1.4E-06 48.0 2.3 22 100-121 90-112 (312)
347 1qf9_A UMP/CMP kinase, protein 93.0 0.061 2.1E-06 42.5 3.2 20 101-120 7-27 (194)
348 2v54_A DTMP kinase, thymidylat 92.9 0.052 1.8E-06 43.5 2.7 22 100-121 4-26 (204)
349 3b9q_A Chloroplast SRP recepto 92.9 0.042 1.4E-06 47.7 2.3 21 101-121 101-122 (302)
350 2yvu_A Probable adenylyl-sulfa 92.9 0.069 2.4E-06 42.3 3.4 22 100-121 13-35 (186)
351 2qt1_A Nicotinamide riboside k 92.9 0.064 2.2E-06 43.3 3.2 22 100-121 21-43 (207)
352 2yv5_A YJEQ protein; hydrolase 92.8 0.046 1.6E-06 47.3 2.5 19 102-120 167-186 (302)
353 1ixz_A ATP-dependent metallopr 92.8 0.046 1.6E-06 45.7 2.3 19 103-121 52-71 (254)
354 2wwf_A Thymidilate kinase, put 92.8 0.065 2.2E-06 43.2 3.2 21 100-120 10-31 (212)
355 3nh6_A ATP-binding cassette SU 92.8 0.04 1.4E-06 47.9 2.0 20 102-121 82-101 (306)
356 1gtv_A TMK, thymidylate kinase 92.7 0.022 7.4E-07 46.1 0.1 20 102-121 2-22 (214)
357 2bbs_A Cystic fibrosis transme 92.6 0.055 1.9E-06 46.6 2.6 20 102-121 66-86 (290)
358 1zak_A Adenylate kinase; ATP:A 92.6 0.046 1.6E-06 44.7 2.0 20 101-120 6-26 (222)
359 2p65_A Hypothetical protein PF 92.6 0.042 1.4E-06 42.9 1.7 21 102-122 45-66 (187)
360 2ze6_A Isopentenyl transferase 92.6 0.051 1.7E-06 45.7 2.3 20 102-121 3-23 (253)
361 2x8a_A Nuclear valosin-contain 92.6 0.049 1.7E-06 46.4 2.3 19 103-121 47-66 (274)
362 2vli_A Antibiotic resistance p 92.6 0.045 1.5E-06 43.0 1.8 20 101-120 6-26 (183)
363 2pbr_A DTMP kinase, thymidylat 92.6 0.061 2.1E-06 42.6 2.6 20 102-121 2-22 (195)
364 2cvh_A DNA repair and recombin 92.5 0.053 1.8E-06 43.9 2.3 20 102-121 22-42 (220)
365 3a4m_A L-seryl-tRNA(SEC) kinas 92.5 0.057 1.9E-06 45.5 2.5 21 101-121 5-26 (260)
366 3be4_A Adenylate kinase; malar 92.5 0.059 2E-06 44.0 2.5 20 101-120 6-26 (217)
367 3fvq_A Fe(3+) IONS import ATP- 92.5 0.053 1.8E-06 48.2 2.3 20 102-121 32-52 (359)
368 2c95_A Adenylate kinase 1; tra 92.4 0.061 2.1E-06 42.7 2.5 20 101-120 10-30 (196)
369 1n0w_A DNA repair protein RAD5 92.4 0.055 1.9E-06 44.5 2.3 21 102-122 26-47 (243)
370 2bwj_A Adenylate kinase 5; pho 92.4 0.062 2.1E-06 42.8 2.5 21 101-121 13-34 (199)
371 1cr0_A DNA primase/helicase; R 92.4 0.051 1.7E-06 46.6 2.1 21 102-122 37-58 (296)
372 3bos_A Putative DNA replicatio 92.4 0.056 1.9E-06 44.2 2.3 21 101-121 53-74 (242)
373 2z0h_A DTMP kinase, thymidylat 92.3 0.068 2.3E-06 42.4 2.6 20 102-121 2-22 (197)
374 1e6c_A Shikimate kinase; phosp 92.3 0.066 2.3E-06 41.6 2.5 19 102-120 4-23 (173)
375 1nn5_A Similar to deoxythymidy 92.3 0.065 2.2E-06 43.2 2.5 22 100-121 9-31 (215)
376 1z47_A CYSA, putative ABC-tran 92.3 0.062 2.1E-06 47.7 2.5 20 102-121 43-63 (355)
377 1uf9_A TT1252 protein; P-loop, 92.2 0.073 2.5E-06 42.5 2.8 23 100-122 8-31 (203)
378 2p5t_B PEZT; postsegregational 92.2 0.068 2.3E-06 44.8 2.7 21 100-120 32-53 (253)
379 3umf_A Adenylate kinase; rossm 92.2 0.083 2.9E-06 43.5 3.1 22 100-121 28-51 (217)
380 2yyz_A Sugar ABC transporter, 92.2 0.064 2.2E-06 47.7 2.5 20 102-121 31-51 (359)
381 2it1_A 362AA long hypothetical 92.2 0.066 2.2E-06 47.7 2.6 20 102-121 31-51 (362)
382 2jeo_A Uridine-cytidine kinase 92.1 0.062 2.1E-06 44.8 2.3 21 101-121 26-47 (245)
383 3kta_A Chromosome segregation 92.1 0.066 2.3E-06 42.1 2.3 19 102-120 28-47 (182)
384 2vp4_A Deoxynucleoside kinase; 92.1 0.1 3.5E-06 43.0 3.5 22 100-121 20-42 (230)
385 2og2_A Putative signal recogni 92.1 0.062 2.1E-06 47.8 2.3 21 101-121 158-179 (359)
386 1odf_A YGR205W, hypothetical 3 92.1 0.084 2.9E-06 45.5 3.1 21 100-120 31-52 (290)
387 1ak2_A Adenylate kinase isoenz 92.1 0.075 2.6E-06 43.9 2.7 20 101-120 17-37 (233)
388 1rz3_A Hypothetical protein rb 92.1 0.062 2.1E-06 43.3 2.1 22 100-121 22-44 (201)
389 1iy2_A ATP-dependent metallopr 92.1 0.064 2.2E-06 45.6 2.3 19 103-121 76-95 (278)
390 3jvv_A Twitching mobility prot 92.1 0.061 2.1E-06 47.8 2.3 20 102-121 125-145 (356)
391 3rlf_A Maltose/maltodextrin im 92.1 0.069 2.4E-06 47.9 2.6 20 102-121 31-51 (381)
392 3tui_C Methionine import ATP-b 92.0 0.07 2.4E-06 47.5 2.6 19 103-121 57-76 (366)
393 2w58_A DNAI, primosome compone 92.0 0.067 2.3E-06 42.9 2.3 21 101-121 55-76 (202)
394 2iyv_A Shikimate kinase, SK; t 92.0 0.073 2.5E-06 42.0 2.4 19 102-120 4-23 (184)
395 1g29_1 MALK, maltose transport 92.0 0.07 2.4E-06 47.7 2.5 20 102-121 31-51 (372)
396 1v43_A Sugar-binding transport 91.9 0.072 2.5E-06 47.6 2.6 20 102-121 39-59 (372)
397 2yhs_A FTSY, cell division pro 91.8 0.069 2.4E-06 49.5 2.3 92 147-255 376-480 (503)
398 1njg_A DNA polymerase III subu 91.7 0.073 2.5E-06 43.1 2.3 20 102-121 47-67 (250)
399 2dr3_A UPF0273 protein PH0284; 91.7 0.076 2.6E-06 43.7 2.3 20 102-121 25-45 (247)
400 2ewv_A Twitching motility prot 91.7 0.07 2.4E-06 47.7 2.2 20 102-121 138-158 (372)
401 2pt7_A CAG-ALFA; ATPase, prote 91.7 0.08 2.7E-06 46.5 2.5 20 102-121 173-193 (330)
402 3d31_A Sulfate/molybdate ABC t 91.7 0.061 2.1E-06 47.6 1.8 20 102-121 28-48 (348)
403 1lv7_A FTSH; alpha/beta domain 91.6 0.077 2.6E-06 44.4 2.3 20 102-121 47-67 (257)
404 1in4_A RUVB, holliday junction 91.6 0.074 2.5E-06 46.6 2.3 20 102-121 53-73 (334)
405 1sq5_A Pantothenate kinase; P- 91.6 0.072 2.5E-06 46.2 2.1 21 101-121 81-102 (308)
406 2qmh_A HPR kinase/phosphorylas 91.5 0.089 3.1E-06 42.8 2.5 23 101-123 35-58 (205)
407 3tqc_A Pantothenate kinase; bi 91.5 0.1 3.5E-06 45.6 3.1 21 100-120 92-113 (321)
408 4e22_A Cytidylate kinase; P-lo 91.4 0.097 3.3E-06 43.9 2.7 20 101-120 28-48 (252)
409 2gza_A Type IV secretion syste 91.4 0.08 2.7E-06 47.0 2.3 20 102-121 177-197 (361)
410 4eaq_A DTMP kinase, thymidylat 91.4 0.085 2.9E-06 43.7 2.3 22 100-121 26-48 (229)
411 3zvl_A Bifunctional polynucleo 91.4 0.27 9.2E-06 44.5 5.8 22 100-121 258-280 (416)
412 2pez_A Bifunctional 3'-phospho 91.4 0.094 3.2E-06 41.2 2.5 21 101-121 6-27 (179)
413 1m7g_A Adenylylsulfate kinase; 91.4 0.092 3.1E-06 42.6 2.4 21 101-121 26-47 (211)
414 3gd7_A Fusion complex of cysti 91.2 0.088 3E-06 47.3 2.3 20 102-121 49-69 (390)
415 2r8r_A Sensor protein; KDPD, P 91.2 0.12 3.9E-06 42.9 2.9 21 100-120 6-27 (228)
416 1vht_A Dephospho-COA kinase; s 91.2 0.12 4E-06 42.1 2.9 22 100-121 4-26 (218)
417 2obl_A ESCN; ATPase, hydrolase 91.1 0.093 3.2E-06 46.4 2.4 21 102-122 73-94 (347)
418 1nlf_A Regulatory protein REPA 91.1 0.086 2.9E-06 44.8 2.1 20 102-121 32-52 (279)
419 1f2t_A RAD50 ABC-ATPase; DNA d 91.1 0.11 3.8E-06 39.9 2.5 18 103-120 26-44 (149)
420 3r20_A Cytidylate kinase; stru 90.9 0.12 4E-06 43.1 2.7 21 100-120 9-30 (233)
421 1azs_C GS-alpha; complex (lyas 90.9 0.12 4.2E-06 46.6 3.0 24 96-119 36-60 (402)
422 1oxx_K GLCV, glucose, ABC tran 90.9 0.062 2.1E-06 47.7 1.0 20 102-121 33-53 (353)
423 2px0_A Flagellar biosynthesis 90.8 0.095 3.2E-06 45.3 2.1 85 147-245 183-273 (296)
424 1zuh_A Shikimate kinase; alpha 90.8 0.13 4.5E-06 39.8 2.7 20 101-120 8-28 (168)
425 1ltq_A Polynucleotide kinase; 90.8 0.11 3.8E-06 44.4 2.5 21 101-121 3-24 (301)
426 1p9r_A General secretion pathw 90.8 0.099 3.4E-06 47.5 2.3 20 102-121 169-189 (418)
427 2qz4_A Paraplegin; AAA+, SPG7, 90.6 0.11 3.8E-06 43.2 2.3 20 102-121 41-61 (262)
428 3h4m_A Proteasome-activating n 90.5 0.11 3.7E-06 44.0 2.2 20 102-121 53-73 (285)
429 1tue_A Replication protein E1; 90.5 0.087 3E-06 43.1 1.5 20 102-121 60-80 (212)
430 1vma_A Cell division protein F 90.5 0.11 3.9E-06 45.0 2.3 86 147-246 187-284 (306)
431 3b9p_A CG5977-PA, isoform A; A 90.4 0.11 3.8E-06 44.2 2.2 21 101-121 55-76 (297)
432 3nwj_A ATSK2; P loop, shikimat 90.4 0.11 3.8E-06 43.7 2.1 20 101-120 49-69 (250)
433 4ad8_A DNA repair protein RECN 90.1 0.081 2.8E-06 49.4 1.1 17 103-119 63-80 (517)
434 2oap_1 GSPE-2, type II secreti 90.1 0.13 4.4E-06 48.0 2.5 20 102-121 262-282 (511)
435 2npi_A Protein CLP1; CLP1-PCF1 90.1 0.11 3.9E-06 47.7 2.1 20 102-121 140-160 (460)
436 3tqf_A HPR(Ser) kinase; transf 90.0 0.14 4.9E-06 40.6 2.3 23 101-123 17-40 (181)
437 2qby_A CDC6 homolog 1, cell di 90.0 0.12 4.2E-06 45.3 2.1 20 102-121 47-67 (386)
438 2f6r_A COA synthase, bifunctio 89.9 0.17 5.7E-06 43.3 2.8 21 100-120 75-96 (281)
439 1nij_A Hypothetical protein YJ 89.9 0.11 3.7E-06 45.3 1.6 21 102-122 6-27 (318)
440 1l8q_A Chromosomal replication 89.8 0.13 4.6E-06 44.5 2.2 20 102-121 39-59 (324)
441 3t15_A Ribulose bisphosphate c 89.8 0.13 4.5E-06 44.1 2.1 21 101-121 37-58 (293)
442 2dpy_A FLII, flagellum-specifi 89.8 0.14 4.7E-06 46.8 2.4 21 102-122 159-180 (438)
443 2qen_A Walker-type ATPase; unk 89.7 0.14 4.9E-06 44.3 2.3 21 102-122 33-54 (350)
444 3syl_A Protein CBBX; photosynt 89.6 0.17 5.9E-06 43.2 2.7 21 101-121 68-89 (309)
445 1p5z_B DCK, deoxycytidine kina 89.6 0.19 6.5E-06 42.2 2.9 22 100-121 24-46 (263)
446 2zts_A Putative uncharacterize 89.6 0.16 5.6E-06 41.7 2.5 20 102-121 32-52 (251)
447 1svm_A Large T antigen; AAA+ f 89.6 0.14 5E-06 45.7 2.3 20 102-121 171-191 (377)
448 3cf0_A Transitional endoplasmi 89.6 0.14 4.9E-06 44.0 2.2 20 102-121 51-71 (301)
449 1ofh_A ATP-dependent HSL prote 89.5 0.15 5.2E-06 43.4 2.3 20 102-121 52-72 (310)
450 3ea0_A ATPase, para family; al 89.4 2.6 8.8E-05 34.3 9.8 85 147-244 119-204 (245)
451 1fnn_A CDC6P, cell division co 89.3 0.16 5.3E-06 44.9 2.3 20 102-121 46-66 (389)
452 1d2n_A N-ethylmaleimide-sensit 89.3 0.16 5.4E-06 42.8 2.3 22 100-121 64-86 (272)
453 3a8t_A Adenylate isopentenyltr 89.2 0.18 6.3E-06 44.3 2.6 20 102-121 42-62 (339)
454 2fna_A Conserved hypothetical 89.2 0.15 5.1E-06 44.2 2.1 20 102-121 32-52 (357)
455 3b60_A Lipid A export ATP-bind 89.2 0.17 6E-06 47.8 2.7 21 102-122 371-391 (582)
456 3uc9_A Increased recombination 89.1 0.15 5.1E-06 42.3 1.8 25 99-123 26-53 (233)
457 1q3t_A Cytidylate kinase; nucl 89.1 0.2 6.9E-06 41.3 2.7 23 99-121 15-38 (236)
458 1c9k_A COBU, adenosylcobinamid 89.1 0.2 6.9E-06 39.9 2.6 20 103-122 2-22 (180)
459 1sxj_E Activator 1 40 kDa subu 89.1 0.16 5.4E-06 44.4 2.1 19 103-121 39-58 (354)
460 4a82_A Cystic fibrosis transme 89.0 0.19 6.4E-06 47.6 2.7 21 102-122 369-389 (578)
461 3euj_A Chromosome partition pr 88.9 0.17 5.9E-06 46.7 2.3 19 102-120 31-50 (483)
462 1yqt_A RNAse L inhibitor; ATP- 88.9 0.2 6.9E-06 47.0 2.8 20 102-121 49-69 (538)
463 2orw_A Thymidine kinase; TMTK, 88.9 0.19 6.4E-06 40.0 2.3 19 103-121 6-25 (184)
464 3qf7_A RAD50; ABC-ATPase, ATPa 88.8 0.19 6.7E-06 44.6 2.5 18 103-120 26-44 (365)
465 3crm_A TRNA delta(2)-isopenten 88.7 0.2 6.9E-06 43.8 2.5 21 101-121 6-27 (323)
466 3b5x_A Lipid A export ATP-bind 88.7 0.2 6.9E-06 47.4 2.7 20 102-121 371-391 (582)
467 4fcw_A Chaperone protein CLPB; 88.7 0.19 6.4E-06 43.0 2.3 20 102-121 49-69 (311)
468 1pzn_A RAD51, DNA repair and r 88.5 0.18 6.1E-06 44.6 2.1 21 102-122 133-154 (349)
469 2yl4_A ATP-binding cassette SU 88.4 0.19 6.4E-06 47.7 2.3 21 102-122 372-392 (595)
470 1sxj_C Activator 1 40 kDa subu 88.4 0.19 6.6E-06 43.9 2.2 20 103-122 49-69 (340)
471 2v1u_A Cell division control p 88.3 0.17 5.9E-06 44.4 1.9 21 101-121 45-66 (387)
472 1xwi_A SKD1 protein; VPS4B, AA 88.3 0.2 6.7E-06 43.7 2.2 21 101-121 46-67 (322)
473 3ozx_A RNAse L inhibitor; ATP 88.2 0.22 7.6E-06 46.7 2.6 20 102-121 27-47 (538)
474 3qks_A DNA double-strand break 88.2 0.24 8.2E-06 40.0 2.5 17 103-119 26-43 (203)
475 3d3q_A TRNA delta(2)-isopenten 88.2 0.22 7.7E-06 43.8 2.5 21 101-121 8-29 (340)
476 3qf4_B Uncharacterized ABC tra 88.1 0.21 7.1E-06 47.5 2.4 21 102-122 383-403 (598)
477 1sxj_D Activator 1 41 kDa subu 88.1 0.21 7.1E-06 43.5 2.3 20 103-122 61-81 (353)
478 2grj_A Dephospho-COA kinase; T 88.1 0.3 1E-05 39.2 3.0 23 99-121 11-34 (192)
479 3uk6_A RUVB-like 2; hexameric 88.0 0.2 6.9E-06 44.0 2.1 21 101-121 71-92 (368)
480 3qf4_A ABC transporter, ATP-bi 87.9 0.24 8.1E-06 47.0 2.6 21 102-122 371-391 (587)
481 3exa_A TRNA delta(2)-isopenten 87.9 0.28 9.4E-06 42.8 2.8 20 102-121 5-25 (322)
482 3ake_A Cytidylate kinase; CMP 87.9 0.25 8.5E-06 39.4 2.4 20 102-121 4-24 (208)
483 3eie_A Vacuolar protein sortin 87.9 0.22 7.4E-06 43.3 2.2 21 101-121 52-73 (322)
484 3pxg_A Negative regulator of g 87.8 0.22 7.5E-06 45.8 2.3 22 101-122 202-224 (468)
485 2h92_A Cytidylate kinase; ross 87.8 0.24 8.1E-06 40.1 2.3 21 101-121 4-25 (219)
486 2qgz_A Helicase loader, putati 87.8 0.25 8.5E-06 42.8 2.5 22 100-121 152-174 (308)
487 3lda_A DNA repair protein RAD5 87.7 0.23 7.8E-06 44.8 2.3 19 102-120 180-199 (400)
488 2r62_A Cell division protease 87.6 0.11 3.9E-06 43.5 0.2 19 103-121 47-66 (268)
489 2bjv_A PSP operon transcriptio 87.5 0.36 1.2E-05 40.3 3.3 21 101-121 30-51 (265)
490 3u61_B DNA polymerase accessor 87.5 0.99 3.4E-05 38.8 6.2 19 103-121 51-70 (324)
491 2qby_B CDC6 homolog 3, cell di 87.4 0.23 7.9E-06 43.7 2.1 20 102-121 47-67 (384)
492 3bh0_A DNAB-like replicative h 87.4 0.27 9.3E-06 42.6 2.5 21 102-122 70-91 (315)
493 3foz_A TRNA delta(2)-isopenten 87.3 0.35 1.2E-05 42.0 3.1 20 102-121 12-32 (316)
494 3pfi_A Holliday junction ATP-d 87.3 0.27 9.1E-06 42.7 2.4 19 102-120 57-76 (338)
495 3j16_B RLI1P; ribosome recycli 87.3 0.27 9.1E-06 46.9 2.6 20 102-121 105-125 (608)
496 1zu4_A FTSY; GTPase, signal re 87.3 0.25 8.7E-06 43.0 2.3 102 147-265 192-310 (320)
497 3ozx_A RNAse L inhibitor; ATP 87.2 0.28 9.5E-06 46.0 2.6 20 102-121 296-316 (538)
498 4b4t_K 26S protease regulatory 87.2 0.25 8.7E-06 44.9 2.3 20 102-121 208-228 (428)
499 3gmt_A Adenylate kinase; ssgci 87.2 0.3 1E-05 40.5 2.5 23 99-121 7-30 (230)
500 1yqt_A RNAse L inhibitor; ATP- 87.2 0.3 1E-05 45.8 2.8 21 102-122 314-335 (538)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2.1e-39 Score=273.70 Aligned_cols=168 Identities=23% Similarity=0.423 Sum_probs=139.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
..+++++||+|||++|||||||+ +|+++.|. .+.+|+|.++..+.+.+++..+.++||||+|+++|..+++.|+++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 34567899999999999999999 99999998 66679999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 251 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 251 (283)
++++|||+++++||+++..|+..+..... +.|+||||||+|| .+.+.+..++++++|+++++.|+||||++|.|
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl-----~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~n 162 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL-----ADKRQVSIEEGERKAKELNVMFIETSAKAGYN 162 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTC-----GGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBS
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccch-----HhcCcccHHHHhhHHHHhCCeeEEEeCCCCcC
Confidence 99999999999999999999999988754 4455799999997 23345668999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023335 252 VNKIFKFIMAKLFNLP 267 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~ 267 (283)
|+++|+.|++.+.+..
T Consensus 163 V~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 163 VKQLFRRVAAALPGME 178 (216)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987654
No 2
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.2e-32 Score=226.37 Aligned_cols=161 Identities=20% Similarity=0.340 Sum_probs=137.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
....+||+|+|++|||||||+ +++++.+...+.+++.++ .+.+.+++..+.+++|||+|++.+. +++++|+++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 345899999999999999999 999999884444344444 4788899999999999999998876 889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEEcCCCCcCH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFSSATHNINV 252 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v 252 (283)
+|||+++++||+++..|+.++..+. .+.|.+|||||+|| .....+.+..+++.++++.++ +.|+++||++|.||
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl---~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI---SAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC---BTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc---ccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 9999999999999999999998874 35566899999996 222334455888999999997 89999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|+++++.+.+.
T Consensus 168 ~~lf~~l~~~i~~~ 181 (184)
T 3ihw_A 168 ERVFQDVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 3
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2.2e-32 Score=225.43 Aligned_cols=164 Identities=21% Similarity=0.361 Sum_probs=142.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45899999999999999999 99999887 55668888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++.++++.+..|+..+..... +.|++||+||+|+. ..+.+..++++++++.++++++++||++|.||++
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE-----SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988754 44557999999962 2233447788899999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.++
T Consensus 174 l~~~l~~~i~~~ 185 (191)
T 2a5j_A 174 AFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=7.9e-33 Score=230.40 Aligned_cols=165 Identities=26% Similarity=0.409 Sum_probs=139.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 345799999999999999999 99999987 5566888888888899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~~~v 252 (283)
|+|||++++++|+.+..|+..+..... +.|++||+||+||. ..+.+..++++++++.+++ .++++||++|.||
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-----ELREVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc-----cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 999999999999999999999998864 45557999999972 2233447788999999999 9999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|++|++.+.+.
T Consensus 181 ~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 181 EEAFLRVATELIMR 194 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998653
No 5
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=4.3e-32 Score=224.12 Aligned_cols=170 Identities=19% Similarity=0.333 Sum_probs=146.9
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
......+||+++|++|||||||+ +++++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34456899999999999999999 99999988 55567776654 56778999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCc-EEEEcCCCCc
Q 023335 173 AILFMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKAT-LFFSSATHNI 250 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~ 250 (283)
++|+|||++++++|+++ ..|+..+....++.|.+|||||+|| ..+....+..+++.++++.+++. ++++||++|.
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL---RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGG---CCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh---ccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence 99999999999999997 7899999988777777899999997 22223445588899999999998 9999999999
Q ss_pred CHHHHHHHHHHHHhCCcc
Q 023335 251 NVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~~ 268 (283)
||+++|++|++.+.+...
T Consensus 174 gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp SHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999987653
No 6
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=2e-32 Score=222.32 Aligned_cols=166 Identities=22% Similarity=0.375 Sum_probs=145.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-eEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-ARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|++.++..+.+.+++ ..+.+.+|||+|++.+..++..+++++|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 45799999999999999999 99999887 5567888888888888877 678999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC---CCCce-EEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN---QTAIP-ILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~-ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
|+|||++++++|+.+..|+..+..+. ...|+ ++|+||+|+. ..+....+++.++++.++++++++||++|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 158 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-----HMRTIKPEKHLRFCQENGFSSHFVSAKTGD 158 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 99999999999999999999988753 24564 7999999962 122344678889999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCcc
Q 023335 251 NVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~~ 268 (283)
||+++|++|.+.+.+.++
T Consensus 159 gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 159 SVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp THHHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHhhhh
Confidence 999999999999988764
No 7
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.2e-32 Score=225.85 Aligned_cols=165 Identities=16% Similarity=0.183 Sum_probs=141.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-chhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~i 174 (283)
...+||+|+|++|||||||+ +|++..+. ...++++.++..+.+.+++..+.+.+|||+|++.+.. +...+++++|++
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 35799999999999999999 99876655 5556777788888888999999999999999998765 778889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
|+|||+++++||+.+..|+.++..... +.|+||||||+||. ..+.+..++++++++.++++++++||++|.||
T Consensus 101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v 175 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHNT 175 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-----ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCH
Confidence 999999999999999999999988753 55668999999972 12334577888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
+++|+++++.+.+..
T Consensus 176 ~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 176 RELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987643
No 8
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=1.4e-32 Score=224.58 Aligned_cols=166 Identities=21% Similarity=0.357 Sum_probs=119.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 35799999999999999999 99998887 66678888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..+.. +.|++||+||+||. ..+.+..++++++++.++++++++||++|.||++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 160 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN-----DKRQVSKERGEKLALDYGIKFMETSAKANINVEN 160 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC-----SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999988754 44558999999972 1233447788899999999999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023335 255 IFKFIMAKLFNLPW 268 (283)
Q Consensus 255 lf~~l~~~i~~~~~ 268 (283)
+|++|.+.+.+...
T Consensus 161 l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 161 AFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999876543
No 9
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.4e-32 Score=231.01 Aligned_cols=166 Identities=19% Similarity=0.249 Sum_probs=137.5
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCcc--ccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQ--ERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAV 172 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad 172 (283)
....+||+|+|++|||||||+ +|++... ...++++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345799999999999999999 9996543 46667788888888899999999999999999887 5567778899999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI 250 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 250 (283)
++|+|||+++++||+.+..|+..+... ..+.|+||||||+||. ..+.+..++++.++..++++|+++||++|.
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-----~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-----cCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 999999999999999999999988764 2355668999999972 223344677888899999999999999999
Q ss_pred CHHHHHHHHHHHHhCCc
Q 023335 251 NVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~ 267 (283)
||+++|++|++.+....
T Consensus 189 ~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 189 NVKELFEGIVRQVRLRR 205 (211)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999885443
No 10
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=224.39 Aligned_cols=161 Identities=15% Similarity=0.156 Sum_probs=136.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|++.++ ...+.+++..+.+++|||+|++.+..+ ..+++++|++|
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 45799999999999999999 99999988 4555777665 456778999999999999999998875 67999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC-CCCc
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA-THNI 250 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa-~~~~ 250 (283)
+|||++++++|+.+..|+.++..+. .+.|++|||||+|+. ..+.+..+++.++++.++++++++|| ++|.
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~ 171 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-----QYRQVTKAEGVALAGRFGCLFFEVSACLDFE 171 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECCSSSCSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-----hcCccCHHHHHHHHHHcCCcEEEEeecCccc
Confidence 9999999999999999999998763 466778999999961 22334578899999999999999999 8999
Q ss_pred CHHHHHHHHHHHHhC
Q 023335 251 NVNKIFKFIMAKLFN 265 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~ 265 (283)
||+++|++|++.+.+
T Consensus 172 gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 172 HVQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhh
Confidence 999999999998754
No 11
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-32 Score=219.73 Aligned_cols=165 Identities=23% Similarity=0.423 Sum_probs=147.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999 99999887 66678888988889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
+|||++++++++.+..|+..+....++.|.++|+||+|+. .......+++..++...+++++++||++|.|++++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP-----ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc-----hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 9999999999999999999999888777778999999962 22334468889999999999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 023335 256 FKFIMAKLFNLP 267 (283)
Q Consensus 256 f~~l~~~i~~~~ 267 (283)
|++|.+.+.+..
T Consensus 162 ~~~l~~~~~~~~ 173 (181)
T 3tw8_B 162 FNCITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 12
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=2.3e-32 Score=229.95 Aligned_cols=176 Identities=24% Similarity=0.304 Sum_probs=142.5
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
......+||+|+|++|||||||+ +++++.+. .+.+|++.++ ...+.+++..+.+.+|||+|++.|..++..+++++|
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 100 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD 100 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence 34456799999999999999999 99999988 5556777776 566778888999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHH-HHHHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEE
Q 023335 173 AILFMFDLTSRCTLNS-IVGWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFF 243 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~-~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e 243 (283)
++|+|||+++++||++ +..|+..+....++.|++|||||+||..... ...+.+..+++.++++.+++ +|++
T Consensus 101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 180 (214)
T 3q3j_B 101 AVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLE 180 (214)
T ss_dssp EEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999 6899999999887777789999999721100 00134558889999999999 9999
Q ss_pred EcCCCCcC-HHHHHHHHHHHHhCCccccc
Q 023335 244 SSATHNIN-VNKIFKFIMAKLFNLPWTVK 271 (283)
Q Consensus 244 ~Sa~~~~~-v~~lf~~l~~~i~~~~~~~~ 271 (283)
+||++|.| |+++|+++++.+.+.....+
T Consensus 181 ~SA~~g~g~v~~lf~~l~~~~~~~~~~~~ 209 (214)
T 3q3j_B 181 GSAFTSEKSIHSIFRTASMLCLNKPSPLP 209 (214)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHC------
T ss_pred eccCCCcccHHHHHHHHHHHHhccCcCCC
Confidence 99999998 99999999999988765443
No 13
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-32 Score=227.17 Aligned_cols=164 Identities=23% Similarity=0.407 Sum_probs=146.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999 99999988 66678899998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+....... |++||+||+|+. ..+.+..++++.+++..+++++++||++|.||++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 178 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA-----ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEK 178 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999886544 447999999962 2233447788889999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.+.
T Consensus 179 l~~~l~~~i~~~ 190 (201)
T 2ew1_A 179 LFLDLACRLISE 190 (201)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988764
No 14
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.2e-31 Score=218.99 Aligned_cols=163 Identities=26% Similarity=0.460 Sum_probs=144.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 35799999999999999999 99999987 56678888888888888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..+.. +.|++||+||+|+. ..+....++++++++.++++++++||++|.|+++
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 174 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE-----DERVVPAEDGRRLADDLGFEFFEASAKENINVKQ 174 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999988864 45557999999972 2223446788999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 175 l~~~l~~~i~~ 185 (189)
T 2gf9_A 175 VFERLVDVICE 185 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 15
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.2e-31 Score=216.99 Aligned_cols=166 Identities=19% Similarity=0.172 Sum_probs=143.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. ...+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45899999999999999999 99988887 4555777766 778888999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
+|||++++++|+.+..|+.++..... +.|+++|+||+|+. ..+.+..++++++++.++++++++||++|.|++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 157 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-----MERVISYEEGKALAESWNAAFLESSAKENQTAV 157 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-----hcceecHHHHHHHHHHhCCcEEEEecCCCCCHH
Confidence 99999999999999999999977643 55668999999962 234455888999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccc
Q 023335 254 KIFKFIMAKLFNLPWT 269 (283)
Q Consensus 254 ~lf~~l~~~i~~~~~~ 269 (283)
++|++|++.+.+....
T Consensus 158 ~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 158 DVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999877643
No 16
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=1.9e-31 Score=217.80 Aligned_cols=164 Identities=15% Similarity=0.195 Sum_probs=142.8
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
.....+||+|+|++|||||||+ +++++.+. .+.++++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 3456899999999999999999 99998888 5555666666 6778889999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC-CCc
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT-HNI 250 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~-~~~ 250 (283)
+++|||++++++|+.+..|+..+... ..+.|+++|+||+|+. ..+.+..++++++++.++++++++||+ +|.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 167 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-----HLRKVTRDQGKEMATKYNIPYIETSAKDPPL 167 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-----TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-----hccCcCHHHHHHHHHHhCCeEEEeccCCCCC
Confidence 99999999999999999999998764 3355668999999972 223455788999999999999999999 999
Q ss_pred CHHHHHHHHHHHHhC
Q 023335 251 NVNKIFKFIMAKLFN 265 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~ 265 (283)
||+++|++|.+.+.+
T Consensus 168 ~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 168 NVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998764
No 17
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.4e-31 Score=217.08 Aligned_cols=163 Identities=23% Similarity=0.391 Sum_probs=144.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45799999999999999999 99999887 45568888888888899999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++..+++.+..|+..+..... +.|+++|+||+|+. .......++++++++.++++++++||++|.|+++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE-----AQRDVTYEEAKQFAEENGLLFLEASAKTGENVED 167 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988764 45557999999962 2233447788999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 168 l~~~l~~~i~~ 178 (179)
T 1z0f_A 168 AFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 18
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.7e-31 Score=219.82 Aligned_cols=169 Identities=22% Similarity=0.413 Sum_probs=149.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 456799999999999999999 99999988 6667888888888899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
|+|||++++.+++.+..|+.++..+. .+.|++||+||+|+ .......+++.++++.++++++++||++|.||
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK------ENREVDRNEGLKFARKHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS------SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC------cccccCHHHHHHHHHHcCCEEEEecCCCCCCH
Confidence 99999999999999999999998764 34555899999996 12334467888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccccc
Q 023335 253 NKIFKFIMAKLFNLPWTVK 271 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~~~~ 271 (283)
+++|++|.+.+.+.++...
T Consensus 166 ~~l~~~l~~~~~~~~~~~~ 184 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPGLWE 184 (195)
T ss_dssp HHHHHHHHHHHHTSGGGTC
T ss_pred HHHHHHHHHHHHhhhhhhc
Confidence 9999999999998775443
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1.2e-31 Score=215.90 Aligned_cols=163 Identities=26% Similarity=0.485 Sum_probs=137.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. ...+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 35799999999999999999 99999887 56678888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++.++++.+..|+..+..... +.|+++|+||+|+. ..+.+..++++++++.++++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE-----KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 99999999999999999999887653 44557999999962 1223447788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 159 l~~~l~~~~~~ 169 (170)
T 1z08_A 159 LFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 20
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=1.5e-31 Score=217.43 Aligned_cols=161 Identities=19% Similarity=0.300 Sum_probs=134.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
...+||+++|++|||||||+ +++++.+..+.+|.+.. ..+.+.+++..+.+++|||+|+++ ..+++++|++|+
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 45799999999999999999 99999988766677644 467788899999999999999987 568899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNIN 251 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~ 251 (283)
|||+++++||+++..|++.+.... ++.|++|||||+|+. ....+.+..++++++++.+ +++++++||++|.|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~---~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS---ASSPRVVGDARARALXADMKRCSYYETXATYGLN 155 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB---TTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc---ccccCcCCHHHHHHHHHhhcCCeEEEEeccccCC
Confidence 999999999999999877666542 345558999999962 1223345578888898886 68999999999999
Q ss_pred HHHHHHHHHHHHhCCc
Q 023335 252 VNKIFKFIMAKLFNLP 267 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~ 267 (283)
|+++|+++++.+.+..
T Consensus 156 i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 156 VDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=4.2e-31 Score=214.85 Aligned_cols=166 Identities=25% Similarity=0.437 Sum_probs=137.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
....+||+++|++|||||||+ +++++.+. ...+|++.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346899999999999999999 99999885 456688888888888899999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
+|+|||++++.+++.+..|+..+..... +.|+++|+||+|+. . ...+..++++++++.++++++++||++|.|+
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~---~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA---H--ERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT---S--CCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC---c--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999999999998764 45557999999972 1 2334467788899999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
+++|+++.+.+.+..
T Consensus 162 ~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 162 DLAFTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987653
No 22
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.98 E-value=9.9e-32 Score=221.96 Aligned_cols=163 Identities=23% Similarity=0.414 Sum_probs=138.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35799999999999999999 99999887 56678888888889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN 253 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~ 253 (283)
+|||+++..+++.+..|+..+...... .|++||+||+|+. ..+.+..++++++++.+ +++++++||++|.||+
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 178 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE-----TDREITRQQGEKFAQQITGMRFCEASAKDNFNVD 178 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHH
Confidence 999999999999999999999888654 4557999999962 22334467788888885 7899999999999999
Q ss_pred HHHHHHHHHHhC
Q 023335 254 KIFKFIMAKLFN 265 (283)
Q Consensus 254 ~lf~~l~~~i~~ 265 (283)
++|++|.+.+.+
T Consensus 179 ~l~~~l~~~i~~ 190 (192)
T 2il1_A 179 EIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998864
No 23
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.98 E-value=3.4e-31 Score=215.57 Aligned_cols=166 Identities=28% Similarity=0.438 Sum_probs=144.4
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 456799999999999999999 99999888 5556888888888889999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|+|||++++.+|+.+..|+..+..... +.|+++|+||+|+. .......++++++++.++++++++||++|.|++
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL-----DARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 999999999999999999999998864 44557999999972 123344778889999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023335 254 KIFKFIMAKLFNLP 267 (283)
Q Consensus 254 ~lf~~l~~~i~~~~ 267 (283)
++|++|.+.+.+.+
T Consensus 164 ~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 164 EIFYEIARRLPRVQ 177 (181)
T ss_dssp HHHHHHHHTCC---
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999886654
No 24
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.98 E-value=2.2e-31 Score=215.32 Aligned_cols=162 Identities=21% Similarity=0.269 Sum_probs=132.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC--cccchhhhcccCcEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR--SFDHVPIACKDAVAIL 175 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~~ad~ii 175 (283)
..+||+++|++|||||||+ +++++.+...+++.|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 4689999999999999999 999998886677888888888889999999999999999988 5677788899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
+|||++++++|+.+..|+..+.... .+.|+++|+||+|+. + .+.+..++++.++..++++++++||++|.||+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 157 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA----R-CREVSVEEGRACAVVFDCKFIETSATLQHNVA 157 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT----T-TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc----c-ccccCHHHHHHHHHHcCCeEEEEecCCCCCHH
Confidence 9999999999999999999988753 355668999999972 1 23344677888999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 023335 254 KIFKFIMAKLFN 265 (283)
Q Consensus 254 ~lf~~l~~~i~~ 265 (283)
++|++|.+.+..
T Consensus 158 ~l~~~l~~~~~~ 169 (175)
T 2nzj_A 158 ELFEGVVRQLRL 169 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998854
No 25
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.98 E-value=1.9e-31 Score=214.70 Aligned_cols=162 Identities=16% Similarity=0.207 Sum_probs=129.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc-chhhhcccCcEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD-HVPIACKDAVAILF 176 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~iil 176 (283)
.+||+++|++|||||||+ ++++..+. ...++.+.+.....+.+++..+.+.+|||+|++.+.. +...+++++|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999 99987776 4455667788888888999999999999999999876 77788999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||++++++|+.+..|+.++..... +.|.++|+||+|+. ..+.+..+++.++++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-----RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-----hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999988765 56668999999962 2344557889999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|+++++.+...
T Consensus 157 l~~~l~~~i~~~ 168 (169)
T 3q85_A 157 LFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 26
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.98 E-value=4.1e-31 Score=217.93 Aligned_cols=165 Identities=21% Similarity=0.390 Sum_probs=147.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45799999999999999999 99999888 66678888998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCC-ceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTA-IPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..+.... |++||+||+|+. .......++++.+++.++++++++||++|.||++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-----TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 9999999999999999999998886544 457999999972 2233446788999999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|++|.+.+.+..
T Consensus 169 l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 169 SFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987654
No 27
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=2.1e-31 Score=214.10 Aligned_cols=164 Identities=25% Similarity=0.395 Sum_probs=143.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4789999999999999999 99999887 566788888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||++++.+++++..|+..+..... +.|+++|+||+|+. .... ..+..+++.++++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL---QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVND 158 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG---GSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc---ccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999988764 44557999999972 2211 33457788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 159 l~~~l~~~i~~ 169 (170)
T 1ek0_A 159 VFLGIGEKIPL 169 (170)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999887643
No 28
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.98 E-value=1.4e-31 Score=214.81 Aligned_cols=162 Identities=20% Similarity=0.392 Sum_probs=145.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. .+.+|.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999 99999887 566788889888899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|||++++++++.+..|+..+.....+.|+++|+||+|+. ..+....++++++++.++++++++||++|.|++++|
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 158 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL-----DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG-----GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 999999999999999999998877677778999999962 112344678889999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
++|.+.+.+
T Consensus 159 ~~l~~~~~~ 167 (168)
T 1z2a_A 159 KYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999998865
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.98 E-value=2.7e-31 Score=213.43 Aligned_cols=163 Identities=25% Similarity=0.430 Sum_probs=142.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 46799999999999999999 99998887 45568888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++++.+..|+..+..... ..|+++|+||+|+. .......+++.++++..+++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA-----NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc-----cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999988754 44457999999962 1223346788889999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 159 l~~~i~~~~~~ 169 (170)
T 1r2q_A 159 IFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 30
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.98 E-value=4.6e-31 Score=214.02 Aligned_cols=165 Identities=22% Similarity=0.380 Sum_probs=142.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 456799999999999999999 99999887 6667889888888999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH 248 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~ 248 (283)
++|||+++..+++.+..|+.++.... .+.|.++|+||+|+. ......+++.++++ ..+++++++||++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS------ERQVSTEEAQAWCRDNGDYPYFETSAKD 157 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS------SCSSCHHHHHHHHHHTTCCCEEECCTTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc------ccccCHHHHHHHHHhcCCceEEEEeCCC
Confidence 99999999999999999999998764 345668999999972 23345778888888 5678999999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023335 249 NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~ 267 (283)
|.|++++|+++++.+.+.+
T Consensus 158 ~~gi~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLATE 176 (177)
T ss_dssp CTTHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHhhc
Confidence 9999999999999997653
No 31
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=1.3e-32 Score=226.75 Aligned_cols=164 Identities=23% Similarity=0.434 Sum_probs=145.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 45799999999999999999 99999887 55568888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..+.. +.|.+||+||+|+. ..+....++++.+++.++++++++||++|.||++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME-----EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQ 175 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 99999999999999999999998864 44557999999961 2234457888999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.+.
T Consensus 176 l~~~l~~~i~~~ 187 (191)
T 3dz8_A 176 AFERLVDAICDK 187 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.98 E-value=6.6e-31 Score=211.33 Aligned_cols=163 Identities=27% Similarity=0.466 Sum_probs=143.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
.+.+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..+...+++++|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 46799999999999999999 99999987 55678888888888889999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++.+++.+..|+..+...... .|+++|+||+|+. .......+++..+++.++++++++||++|.|+++
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT-----DVREVMERDAKDYADSIHAIFVETSAKNAININE 158 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 999999999999999999999988544 4447999999972 2233447788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 159 l~~~i~~~i~~ 169 (170)
T 1z0j_A 159 LFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 33
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.98 E-value=1e-30 Score=217.81 Aligned_cols=165 Identities=20% Similarity=0.372 Sum_probs=146.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45799999999999999999 99999988 66678899998889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+...... .|++||+||+|+. . .+....+++..+++.++++++++||++|.||++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~----~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK----D-KRVVEYDVAKEFADANKMPFLETSALDSTNVED 160 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT----T-TCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc----c-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 999999999999999999999887644 4557999999972 1 123446788889999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|++|.+.+.+..
T Consensus 161 l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 161 AFLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887643
No 34
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.98 E-value=5.8e-31 Score=217.03 Aligned_cols=165 Identities=25% Similarity=0.393 Sum_probs=145.2
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. ...++.+.++..+.+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345799999999999999999 99999988 5556888888888888999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|+|||++++.+|+.+..|+..+..... ..|+++|+||+||. ..+....++++.+++..+++++++||++|.|++
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS-----QAREVPTEEARMFAENNGLLFLETSALDSTNVE 176 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999987754 44557999999972 112344778889999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023335 254 KIFKFIMAKLFNL 266 (283)
Q Consensus 254 ~lf~~l~~~i~~~ 266 (283)
++|++|.+.+.++
T Consensus 177 ~l~~~l~~~i~~~ 189 (193)
T 2oil_A 177 LAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 35
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=7.8e-31 Score=216.40 Aligned_cols=168 Identities=17% Similarity=0.259 Sum_probs=142.7
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 346799999999999999999 99999887 4455666554 56677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335 175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
|+|||++++++|+.+. .|+..+..+.++.|++||+||+|+..... ...+.+..+++.++++.+++ +++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 173 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS 173 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999999997 89999999877777899999999732100 00123447888999999998 899999
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023335 246 ATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~ 265 (283)
|++|.||+++|++|.+.++.
T Consensus 174 a~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 174 ALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999998864
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.98 E-value=3.5e-31 Score=212.95 Aligned_cols=161 Identities=26% Similarity=0.457 Sum_probs=138.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence 689999999999999999 99999887 6667888888888888899899999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
||++++++++.+..|+..+..... +.|+++|+||+|+ .......+++.++++.++++++++||++|.|++++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 156 (170)
T 1g16_A 83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIF 156 (170)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC------TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC------CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999988864 4455799999996 122344678888999999999999999999999999
Q ss_pred HHHHHHHhCC
Q 023335 257 KFIMAKLFNL 266 (283)
Q Consensus 257 ~~l~~~i~~~ 266 (283)
++|.+.+.++
T Consensus 157 ~~l~~~~~~~ 166 (170)
T 1g16_A 157 FTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999988654
No 37
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.98 E-value=3.2e-31 Score=216.79 Aligned_cols=165 Identities=24% Similarity=0.348 Sum_probs=146.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 45799999999999999999 99999887 66678888888889999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..... +.|+++|+||+|+. .......+++.++++..+++++++||++|.|+++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD-----ADREVTFLEASRFAQENELMFLETSALTGENVEE 162 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 99999999999999999999988754 44557999999962 1233446788899999999999999999999999
Q ss_pred HHHHHHHHHhCCc
Q 023335 255 IFKFIMAKLFNLP 267 (283)
Q Consensus 255 lf~~l~~~i~~~~ 267 (283)
+|+++.+.+.+..
T Consensus 163 l~~~l~~~~~~~~ 175 (186)
T 2bme_A 163 AFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987643
No 38
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.98 E-value=4.2e-31 Score=215.78 Aligned_cols=168 Identities=24% Similarity=0.347 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+..+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+++|||+|++.+..++..+++++|+++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 81 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence 45799999999999999999 99998887 4445665444 566778999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC----------cccchHHHHHHHHHHcCC-cEEE
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD----------LQWTIATQARAYAKAMKA-TLFF 243 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~e 243 (283)
+|||++++.+|+++. .|+..+....++.|+++|+||+|+. ... .+.+..+++..+++.+++ ++++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 158 (186)
T 1mh1_A 82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 158 (186)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccc---ccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 999999999999997 7999999887777778999999972 211 123346788889999997 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~ 269 (283)
+||++|.|++++|+++.+.+.+.++.
T Consensus 159 ~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 159 CSALTQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred ecCCCccCHHHHHHHHHHHHhccccc
Confidence 99999999999999999999887654
No 39
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-31 Score=223.33 Aligned_cols=167 Identities=25% Similarity=0.326 Sum_probs=141.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|.+.++ .+.+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 45799999999999999999 99999988 4556777665 456778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa 246 (283)
+|||++++++|+++ ..|+..+..+.++.|++|||||+|+.... ....+.+..++++++++.++ +.|+++||
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA 184 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence 99999999999999 79999999887777778999999972110 00012344778899999988 68999999
Q ss_pred C-CCcCHHHHHHHHHHHHhC
Q 023335 247 T-HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 247 ~-~~~~v~~lf~~l~~~i~~ 265 (283)
+ ++.||+++|+.|++.+++
T Consensus 185 k~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 185 LQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHHHHhh
Confidence 9 689999999999998864
No 40
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.8e-31 Score=219.13 Aligned_cols=166 Identities=25% Similarity=0.432 Sum_probs=144.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 45899999999999999999 99999987 66678898888888888888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++++|+.+..|+..+..... +.|+++|+||+|+. ..+.+..++++++++.++++++++||++|.||++
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 175 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS-----DIREVPLKDAKEYAESIGAIVVETSAKNAINIEE 175 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHH
Confidence 99999999999999999999988865 44557999999962 2233447889999999999999999999999999
Q ss_pred HHHHHHHHHhCCcc
Q 023335 255 IFKFIMAKLFNLPW 268 (283)
Q Consensus 255 lf~~l~~~i~~~~~ 268 (283)
+|++|.+.+.+.++
T Consensus 176 l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 176 LFQGISRQIPPLDP 189 (192)
T ss_dssp HHHHHHHTCC----
T ss_pred HHHHHHHHHHhhCC
Confidence 99999998866543
No 41
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=221.60 Aligned_cols=166 Identities=23% Similarity=0.351 Sum_probs=137.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 345799999999999999999 99999887 6667888888888899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|+|||++++++|+.+..|+..+..... +.|++||+||+|+. ....+..+++.++++..+++++++||++|.||+
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~ 176 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD-----PEREVTFLEASRFAQENELMFLETSALTGENVE 176 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999988754 44557999999962 222344678888999999999999999999999
Q ss_pred HHHHHHHHHHhCCc
Q 023335 254 KIFKFIMAKLFNLP 267 (283)
Q Consensus 254 ~lf~~l~~~i~~~~ 267 (283)
++|++|.+.+.+..
T Consensus 177 ~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 177 EAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.2e-31 Score=221.31 Aligned_cols=167 Identities=18% Similarity=0.165 Sum_probs=137.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 345899999999999999999 99999988 4445777666 66677778889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
|+|||++++++|+.+..|+..+.... .+.|++||+||+|+. ....+..+++..+++.++++++++||++|.||
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-----PEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-----cccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 99999999999999999999998763 345668999999972 22344578889999999999999999999999
Q ss_pred HHHHHHHHHHHhCCccc
Q 023335 253 NKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~~ 269 (283)
+++|++|.+.+.+....
T Consensus 175 ~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 175 QGIFTKVIQEIARVENS 191 (201)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999999876543
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=3.8e-31 Score=221.44 Aligned_cols=168 Identities=22% Similarity=0.364 Sum_probs=140.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 45799999999999999999 99999887 4455776554 566778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-------cchHHHHHHHHHHcCC-cEEEEcC
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-------WTIATQARAYAKAMKA-TLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-------~~~~~~~~~~~~~~~~-~~~e~Sa 246 (283)
+|||++++++|+++. .|+..+..+.++.|++||+||+||. .... .+..+++.++++.+++ +++++||
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 161 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLR----DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS 161 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhh----hCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence 999999999999997 8999999887777778999999962 1111 1247788899999996 8999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCcccc
Q 023335 247 THNINVNKIFKFIMAKLFNLPWTV 270 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i~~~~~~~ 270 (283)
++|.||+++|++|++.+.+.....
T Consensus 162 ~~g~gi~~l~~~l~~~~~~~~~~~ 185 (212)
T 2j0v_A 162 KTQQNVKAVFDTAIKVVLQPPRRK 185 (212)
T ss_dssp TTCTTHHHHHHHHHHHHHCC----
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhc
Confidence 999999999999999998876443
No 44
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-31 Score=221.94 Aligned_cols=168 Identities=25% Similarity=0.401 Sum_probs=140.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|.+.++....+.+++..+.+.+|||+|++.|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45799999999999999999 99999988 56678888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||++++.+|+.+..|+.++..... +.|++||+||+||. ..+.+..+++..+++.++++++++||++|.||++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 165 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA-----HLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999999988754 44557999999972 1223446788899999999999999999999999
Q ss_pred HHHHHHHHHhCCcccc
Q 023335 255 IFKFIMAKLFNLPWTV 270 (283)
Q Consensus 255 lf~~l~~~i~~~~~~~ 270 (283)
+|++|.+.+.+.....
T Consensus 166 l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 166 AFEELINTIYQKVSKH 181 (223)
T ss_dssp HHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999998766433
No 45
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=4.1e-31 Score=214.31 Aligned_cols=165 Identities=22% Similarity=0.428 Sum_probs=143.2
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
..+..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 3456799999999999999999 99998888 566788888888899999999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 174 ILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
+|+|||++++.+++.+..|+..+..... +.|+++|+||+|+. .......+++..+++..+++++++||++|.|+
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 164 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS-----DKRQVSTEEGERKAKELNVMFIETSAKAGYNV 164 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc-----ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 9999999999999999999999987754 44557999999962 12334467888889999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 023335 253 NKIFKFIMAKLFN 265 (283)
Q Consensus 253 ~~lf~~l~~~i~~ 265 (283)
+++|++|.+.+.+
T Consensus 165 ~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 165 KQLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 46
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=4.6e-31 Score=211.81 Aligned_cols=160 Identities=18% Similarity=0.245 Sum_probs=117.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMF 178 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~ 178 (283)
.+||+++|++|||||||+ ++.+..+....++.+..+ ...+.+++..+.+.+||++|++.+..+...+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 589999999999999999 998777665555555554 467788999999999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 179 DLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 179 D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
|++++++|+.+..|+..+.... .+.|.++|+||+|+. .......+++..++..++++++++||++|.|++++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 155 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-----RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALF 155 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-----SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-----cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHH
Confidence 9999999999999999998763 456668999999972 223445788889999999999999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
++|.+.+.+
T Consensus 156 ~~l~~~~~~ 164 (166)
T 3q72_A 156 EGVVRQIRL 164 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998754
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1e-30 Score=217.24 Aligned_cols=163 Identities=25% Similarity=0.455 Sum_probs=144.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 5799999999999999999 99999987 566788888888888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||++++++|+.+..|+..+..+.. +.|++||+||+|+. ..+....++++++++.++++++++||++|.||+++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME-----DERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT-----TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC-----cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHH
Confidence 9999999999999999999988764 45557999999972 12334477888999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023335 256 FKFIMAKLFNL 266 (283)
Q Consensus 256 f~~l~~~i~~~ 266 (283)
|++|.+.+.++
T Consensus 162 ~~~l~~~i~~~ 172 (203)
T 1zbd_A 162 FERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=7.5e-31 Score=217.70 Aligned_cols=169 Identities=22% Similarity=0.285 Sum_probs=136.7
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 445799999999999999999 99999887 4445666544 56778899999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEc
Q 023335 175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
|+|||++++++|+++. .|+..+..+.++.|++||+||+|+..... .....+..+++..+++.+++ +++++|
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 175 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECS 175 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 9999999999999997 79999999887777789999999721100 00133447788999999998 899999
Q ss_pred CCCCcCHHHHHHHHHHHHhCC
Q 023335 246 ATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~ 266 (283)
|++|.||+++|++|++.+.+.
T Consensus 176 a~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 176 ALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999988754
No 49
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=4.6e-31 Score=217.06 Aligned_cols=161 Identities=25% Similarity=0.433 Sum_probs=140.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-cchhhhcccCcEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF-DHVPIACKDAVAIL 175 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~ad~ii 175 (283)
..+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+. .++..+++++|++|
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 4799999999999999999 99999888 566788888888899999999999999999999988 88899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC---c
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN---I 250 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~---~ 250 (283)
+|||+++..+|+.+..|+.++.... .+.|++||+||+|+. ..+.+..++++++++.++++++++||++| .
T Consensus 99 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 99 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-----SAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 9999999999999999999998874 455668999999962 22234477888999999999999999999 9
Q ss_pred CHHHHHHHHHHHHh
Q 023335 251 NVNKIFKFIMAKLF 264 (283)
Q Consensus 251 ~v~~lf~~l~~~i~ 264 (283)
||+++|++|.+.+.
T Consensus 174 ~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 174 HVEAIFMTLAHKLK 187 (189)
T ss_dssp CHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999988764
No 50
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=3.3e-31 Score=219.93 Aligned_cols=168 Identities=23% Similarity=0.308 Sum_probs=136.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45799999999999999999 99999887 56668888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCC-CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLP-PDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
+|||+++.++++.+..|+..+..... +.|++||+||+||..... ...+.+..++++++++.++++++++||++|.||+
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~ 185 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence 99999999999999999999988754 455689999999621000 0123344778889999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 023335 254 KIFKFIMAKLFN 265 (283)
Q Consensus 254 ~lf~~l~~~i~~ 265 (283)
++|++|++.+.+
T Consensus 186 el~~~l~~~i~~ 197 (199)
T 2p5s_A 186 EAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 51
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.1e-30 Score=209.50 Aligned_cols=160 Identities=20% Similarity=0.254 Sum_probs=137.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. .+.+|.+..+ .+.+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 4689999999999999999 99998887 4555666554 4667788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc-CCcEEEEcCCCCcCHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM-KATLFFSSATHNINVN 253 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~-~~~~~e~Sa~~~~~v~ 253 (283)
|||++++++|+.+..|+..+... ..+.|+++|+||+|+. ..+....+++.++++.+ +++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-----DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-----ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 99999999999999999998876 3356668999999972 22334477888899888 7899999999999999
Q ss_pred HHHHHHHHHHh
Q 023335 254 KIFKFIMAKLF 264 (283)
Q Consensus 254 ~lf~~l~~~i~ 264 (283)
++|++|.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998874
No 52
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=9e-31 Score=209.74 Aligned_cols=161 Identities=17% Similarity=0.227 Sum_probs=136.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+.. ..+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 4799999999999999999 999998874 444555544 4566788989999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||++++++|+.+..|+..+..... +.|+++|+||+|+. .......+++..+++.++++++++||++|.|+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999999988754 55668999999962 1223447788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|+++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 53
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.8e-30 Score=212.57 Aligned_cols=166 Identities=14% Similarity=0.202 Sum_probs=140.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+...++.+..+.....+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 5799999999999999999 999998885554333455567778899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
||+++.++|+.+..|+..+.... .+.|+++|+||+|+. ......+++..+++.++++++++||++|.|++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP------SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS------SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc------ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999998864 355668999999972 2344578889999999999999999999999999
Q ss_pred HHHHHHHHhCCcccc
Q 023335 256 FKFIMAKLFNLPWTV 270 (283)
Q Consensus 256 f~~l~~~i~~~~~~~ 270 (283)
|++|.+.+.+.....
T Consensus 157 ~~~l~~~~~~~~~~~ 171 (189)
T 4dsu_A 157 FYTLVREIRKHKEKM 171 (189)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999987665443
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=5.5e-31 Score=215.03 Aligned_cols=165 Identities=17% Similarity=0.231 Sum_probs=140.7
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
.+..+||+|+|++|||||||+ +++++.+... .+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 345799999999999999999 9999888744 44555544 45677888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++|||+++.++|+.+..|+.++..... +.|+++|+||+|+. .......++++++++.++++++++||++|.||
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCH
Confidence 999999999999999999999988754 56668999999962 12234477888999999999999999999999
Q ss_pred HHHHHHHHHHHhCCc
Q 023335 253 NKIFKFIMAKLFNLP 267 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~ 267 (283)
+++|++|.+.+.+..
T Consensus 169 ~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 169 DKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987644
No 55
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=7.2e-31 Score=215.11 Aligned_cols=167 Identities=25% Similarity=0.326 Sum_probs=141.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.+|.+.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 35799999999999999999 99999887 4556776665 456778888999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCC-------CCCcccchHHHHHHHHHHcC-CcEEEEcC
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRL-------PPDLQWTIATQARAYAKAMK-ATLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l-------~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa 246 (283)
+|||++++++|+++ ..|+..+..+.++.|.+|||||+|+.... ....+.+..+++.++++.++ ++|+++||
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 163 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeee
Confidence 99999999999999 78999999887777778999999972110 00012344788999999988 68999999
Q ss_pred C-CCcCHHHHHHHHHHHHhC
Q 023335 247 T-HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 247 ~-~~~~v~~lf~~l~~~i~~ 265 (283)
+ ++.||+++|+.+++.+++
T Consensus 164 ~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 164 LQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTBHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHhc
Confidence 9 689999999999998875
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.7e-30 Score=210.96 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=140.6
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. ...+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345799999999999999999 99999888 44457776655 7778899899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhH-C-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKW-N-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~-~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++|||+++.++++.+..|+.++... . .+.|+++|+||+|+. ..+....+++..++...+++++++||++|.|+
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-----SQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 9999999999999999999998544 3 355668999999972 22334477888899999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|++|.+.+.+.
T Consensus 160 ~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 160 DEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988654
No 57
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.7e-31 Score=223.97 Aligned_cols=168 Identities=24% Similarity=0.340 Sum_probs=147.8
Q ss_pred CCCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 95 DSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 95 ~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
......+||+|+|++|||||||+ +++.+.+. ...++.|.++....+.+++..+.+.+|||+|++.+..++..+++++|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 34456899999999999999999 98888877 55668888888888999999999999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++|+|||+++..+|+.+..|+..+....++.|.+||+||+||.. . . ...+...+++..+++++++||++|.||
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~----~--~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD----R--K-VKAKSIVFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSS----C--S-SCGGGCCHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccc----c--c-ccHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 99999999999999999999999999887778899999999731 1 1 122556678888999999999999999
Q ss_pred HHHHHHHHHHHhCCccc
Q 023335 253 NKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 253 ~~lf~~l~~~i~~~~~~ 269 (283)
+++|++|.+.+...+..
T Consensus 163 ~~l~~~l~~~l~~~~~~ 179 (221)
T 3gj0_A 163 EKPFLWLARKLIGDPNL 179 (221)
T ss_dssp THHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHhCccc
Confidence 99999999999887753
No 58
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.2e-30 Score=215.89 Aligned_cols=163 Identities=19% Similarity=0.260 Sum_probs=134.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc--cccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC-cccchhhhcccCcEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-SFDHVPIACKDAVAI 174 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~ad~i 174 (283)
..+||+++|++|||||||+ +|++.. +...++++|.++..+.+.+++..+.+.+|||+|++. +..+...+++.+|++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 4699999999999999999 999643 445667788888888899999999999999999877 566778889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++|||+++++||+.+..|+..+.... .+.|+|+||||+||. ..+.+..+++..++..++++|+++||++|.||
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-----~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v 159 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-----RXREVSVSEGRAXAVVFDXKFIETSAAVQHNV 159 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-----ccccccHHHHHHHHHHhCCceEEeccccCCCH
Confidence 99999999999999999999887753 345668999999962 12334467788888899999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|+++++.+...
T Consensus 160 ~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 160 KELFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988543
No 59
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=216.10 Aligned_cols=164 Identities=17% Similarity=0.234 Sum_probs=141.8
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+... .+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 345799999999999999999 9999988744 44655544 56677889899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
++|||+++.++|+.+..|+..+..... +.|++||+||+|+. ....+..+++.++++.++++++++||++|.||
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-----DKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-----ccccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 999999999999999999999988754 56668999999972 12234477888999999999999999999999
Q ss_pred HHHHHHHHHHHhCC
Q 023335 253 NKIFKFIMAKLFNL 266 (283)
Q Consensus 253 ~~lf~~l~~~i~~~ 266 (283)
+++|++|++.+.+.
T Consensus 165 ~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 165 DKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998764
No 60
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.2e-30 Score=214.16 Aligned_cols=165 Identities=22% Similarity=0.371 Sum_probs=144.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeee-EEEEEECCe---------EEEEEEEeCCCCCCcccch
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLI-NKTLMVQGA---------RIAFSIWDVGGDSRSFDHV 164 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~Dt~G~~~~~~~~ 164 (283)
....+||+|+|++|||||||+ +++++.+. ...+|.+.++. .+.+.+++. .+.+.+|||+|++.+..++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999 99998887 56678888887 667777766 7899999999999999999
Q ss_pred hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335 165 PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242 (283)
Q Consensus 165 ~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
..+++++|++|+|||++++.+++.+..|+..+..+. .+.|+++|+||+|+. .......++++++++.++++++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-----DQRAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-----GGCCSCHHHHHHHHHHHTCCEE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-----cccccCHHHHHHHHHHcCCCEE
Confidence 999999999999999999999999999999998876 356668999999962 1223447788899999999999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 243 FSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
++||++|.|++++|++|.+.+.+.
T Consensus 163 ~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 163 ETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 61
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=1.8e-31 Score=224.12 Aligned_cols=165 Identities=26% Similarity=0.413 Sum_probs=143.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCe----------EEEEEEEeCCCCCCcccchh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA----------RIAFSIWDVGGDSRSFDHVP 165 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~----------~~~l~i~Dt~G~~~~~~~~~ 165 (283)
...+||+|+|++|||||||+ +++++.+. .+.+|.+.++..+.+.+++. .+.+.+|||+|++.|..++.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45799999999999999999 99999887 55668888888888888776 78999999999999999999
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEE
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
.+++++|++|+|||+++.++++.+..|+..+.... .+.|++||+||+|+. ....+..++++++++.+++++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-----DQREVNERQARELADKYGIPYFE 177 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-----cccccCHHHHHHHHHHCCCcEEE
Confidence 99999999999999999999999999999887654 355668999999962 22234478889999999999999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+||++|.||+++|++|.+.+.+..
T Consensus 178 ~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 178 TSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp EBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999987643
No 62
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.97 E-value=6.3e-31 Score=219.39 Aligned_cols=164 Identities=23% Similarity=0.320 Sum_probs=136.8
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVA 173 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 173 (283)
.....+||+++|++|||||||+ +++++.+.. +.+|++ +.....+.+++..+.+.+|||+|++.+..++..+++++|+
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 104 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV 104 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence 3456799999999999999999 999998884 444554 4556677888999999999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cE
Q 023335 174 ILFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TL 241 (283)
Q Consensus 174 iilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~ 241 (283)
+|+|||++++++|+++. .|+..+....++.|.+||+||+||. .... .....+++..+++.+++ ++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR---DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH---TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc---cchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 99999999999999997 8999999988777779999999972 1110 11346788899999987 59
Q ss_pred EEEcCCCCcCHHHHHHHHHHHH
Q 023335 242 FFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
+++||++|.||+++|++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998865
No 63
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=8e-31 Score=218.20 Aligned_cols=165 Identities=25% Similarity=0.366 Sum_probs=144.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. .+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 35799999999999999999 99999887 56668888988888889998999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCCC
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATHN 249 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~~ 249 (283)
+|||++++.+|+.+..|+.++.... .+.|+++|+||+|+. ......+++..+++ ..+++++++||++|
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE------NRQVATKRAQAWCYSKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS------CCCSCHHHHHHHHHHTTSCCEEECBTTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc------ccccCHHHHHHHHHhcCCceEEEEeCCCC
Confidence 9999999999999999999988764 345668999999972 22344677888887 66889999999999
Q ss_pred cCHHHHHHHHHHHHhCCcc
Q 023335 250 INVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~~~ 268 (283)
.|++++|++|.+.+.+.+.
T Consensus 160 ~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQET 178 (207)
T ss_dssp BSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999887653
No 64
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.97 E-value=4.4e-30 Score=213.56 Aligned_cols=164 Identities=21% Similarity=0.334 Sum_probs=141.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ ++.++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 35799999999999999999 99999888 55567776664 45778898999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cEEE
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TLFF 243 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~~e 243 (283)
+|||++++++|+.+ ..|+..+....++.|+++|+||+|+. .... +.+..+++.++++.+++ ++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR---QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGT---TCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhh---cCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 99999999999999 68999999887777789999999973 2110 22446788899999998 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhC
Q 023335 244 SSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+||++|.||+++|++|.+.+++
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998864
No 65
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=218.74 Aligned_cols=167 Identities=24% Similarity=0.328 Sum_probs=123.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.+|++.. ....+.+++..+.+.+|||+|++.|..++..+++++|++|
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45799999999999999999 99999887 444455544 3566788999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC----------cccchHHHHHHHHHHcCC-cEEE
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD----------LQWTIATQARAYAKAMKA-TLFF 243 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~----------~~~~~~~~~~~~~~~~~~-~~~e 243 (283)
+|||++++++|+.+. .|+..+....++.|++||+||+|+. ... .+.+..+++.++++.+++ ++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 187 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLR---KDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLE 187 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGG---SCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhh---ccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEE
Confidence 999999999999997 7999999888777889999999972 211 013346788999999998 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
+||++|.||+++|++|.+.+.+.++
T Consensus 188 ~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 188 CSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred ecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999986643
No 66
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=2.1e-30 Score=207.41 Aligned_cols=160 Identities=17% Similarity=0.258 Sum_probs=137.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+...+ ++++ +.....+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL 80 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence 4689999999999999999 99999887444 4554 3446778889999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||++++++++.+..|+.++.... .+.|+++|+||+|+. .......++++++++.++++++++||++|.|+++
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-----SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-----ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence 999999999999999999988764 355668999999962 2233447788889999999999999999999999
Q ss_pred HHHHHHHHHh
Q 023335 255 IFKFIMAKLF 264 (283)
Q Consensus 255 lf~~l~~~i~ 264 (283)
+|++|.+.+.
T Consensus 156 l~~~l~~~~~ 165 (167)
T 1kao_A 156 LFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 67
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.97 E-value=4.2e-32 Score=225.36 Aligned_cols=165 Identities=21% Similarity=0.390 Sum_probs=134.9
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++++|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 346799999999999999999 99998887 5566888888888999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|+|||+++.++|+.+..|+..+...... .|++||+||+|+. ..+.+..++++.+++.++++++++||++|.||+
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~ 184 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT-----TKKVVDYTTAKEFADSLGIPFLETSAKNATNVE 184 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-------CCCCSCC-CHHHHTTTCCBCCCCC---HHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC-----ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 9999999999999999999999887654 4457999999972 112233456778889999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023335 254 KIFKFIMAKLFNL 266 (283)
Q Consensus 254 ~lf~~l~~~i~~~ 266 (283)
++|++|.+.+.++
T Consensus 185 ~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 185 QSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999998877543
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-30 Score=214.86 Aligned_cols=167 Identities=21% Similarity=0.329 Sum_probs=139.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+..+||+++|++|||||||+ +++++.+. .+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 45799999999999999999 99999888 44456666654 34678898999999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc----------ccchHHHHHHHHHHcCC-cEEE
Q 023335 176 FMFDLTSRCTLNSI-VGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL----------QWTIATQARAYAKAMKA-TLFF 243 (283)
Q Consensus 176 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~----------~~~~~~~~~~~~~~~~~-~~~e 243 (283)
+|||++++++|+.+ ..|+..+....++.|+++|+||+|+. .... +.+..+++..+++.+++ .+++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR---SDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE 178 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG---GCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh---ccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence 99999999999999 68999999887777889999999972 2110 22346778889999988 8999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
+||++|.||+++|++|.+.+++...
T Consensus 179 ~SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 179 CSAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999987643
No 69
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=5e-30 Score=211.95 Aligned_cols=160 Identities=23% Similarity=0.417 Sum_probs=140.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE------------------------------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR------------------------------ 146 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~------------------------------ 146 (283)
..+||+|+|++|||||||+ +++++.+. ...+|++.++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 4799999999999999999 99999888 566688888888888887765
Q ss_pred -------EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 147 -------IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 147 -------~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
+.+.+|||+|++.+..++..+++.+|++|+|||++++.+++.+..|+.++..... .|+++|+||+|+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~----- 159 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDK----- 159 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTC-----
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCc-----
Confidence 8899999999999999999999999999999999999999999999999988765 566899999994
Q ss_pred CCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 220 PDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.......++++++++.++++++++||++|.|++++|++|.+.+.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 160 -NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred -ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 223345788899999999999999999999999999999998864
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=5.3e-30 Score=210.56 Aligned_cols=162 Identities=15% Similarity=0.222 Sum_probs=129.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcccccc-ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
+..+||+++|.+|||||||+ +++++.+...+ +|++.. ....+.+++..+.+.+|||+|++.+..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceE-EEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 45799999999999999999 99998887444 455544 3567778898999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
+|||+++..+++++..|+..+..... +.|.++|+||+|+. . .....++++++++.++++++++||++|.|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP---T---RTVDTKQAHELAKSYGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS---C---CCSCHHHHHHHHHHHTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC---c---ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 99999999999999999999987743 55668999999972 1 2344788889999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023335 254 KIFKFIMAKLFNL 266 (283)
Q Consensus 254 ~lf~~l~~~i~~~ 266 (283)
++|++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 71
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.2e-30 Score=210.55 Aligned_cols=165 Identities=24% Similarity=0.389 Sum_probs=129.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
...+||+++|++|||||||+ +++++.+. ...++.+.++....+.++ +..+.+.+|||+|++.+..++..+++++|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 34799999999999999999 99999887 556688888888888877 5678899999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-HcCCcEEEEcCCC
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-AMKATLFFSSATH 248 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-~~~~~~~e~Sa~~ 248 (283)
|+|||+++..+++.+..|+.++.... .+.|+++|+||+|+ ......+..+++.++++ ..+++++++||++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl----~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDA----EESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTS----CGGGCCSCHHHHHHHHHHTTSCCEEEEBTTT
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcc----ccccccCCHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999999999999999999988764 45566899999996 22223344778888888 4578999999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023335 249 NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~ 266 (283)
|.||+++|++|.+.+.++
T Consensus 162 ~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 162 AINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999988653
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.2e-29 Score=202.51 Aligned_cols=160 Identities=15% Similarity=0.218 Sum_probs=137.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccc-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERS-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ ++.++.+... .++++.. ....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 3689999999999999999 9999888744 4455443 45677788889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC--CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ--TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~--~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
|||+++.++++.+..|+..+..... +.|+++|+||+|+. + .....+++.++++.++++++++||++|.|+++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA---A---RTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS---C---CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh---h---cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999999988754 56668999999972 1 23447788899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 023335 255 IFKFIMAKLFN 265 (283)
Q Consensus 255 lf~~l~~~i~~ 265 (283)
+|++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=6e-30 Score=213.84 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=143.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ +++++.+. ...++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34699999999999999999 99998887 66678888888888999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++..+|+.+..|+..+...... .|+++|+||+|+ .......+++.++++.++++++++||++|.||++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM------ETRVVTADQGEALAKELGIPFIESSAKNDDNVNE 171 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC------SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC------cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999887654 455799999996 1233446778889999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.+.
T Consensus 172 l~~~l~~~~~~~ 183 (213)
T 3cph_A 172 IFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888653
No 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.97 E-value=7.9e-31 Score=213.56 Aligned_cols=163 Identities=22% Similarity=0.359 Sum_probs=126.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.+|++..+. ..+.+++..+.+++|||+|++++..++..+++++|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 34799999999999999999 99998887 44556665443 34556777888999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc---------cchHHHHHHHHHHcCC-cEEEE
Q 023335 176 FMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ---------WTIATQARAYAKAMKA-TLFFS 244 (283)
Q Consensus 176 lv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~---------~~~~~~~~~~~~~~~~-~~~e~ 244 (283)
+|||++++++|+++. .|+..+..+.++.|+++|+||+|+. +... .+..+++.++++.+++ +++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 160 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLR----DDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC 160 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHH----TCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhh----cCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence 999999999999997 7999999887777778999999962 1111 1246788899999997 89999
Q ss_pred cCCCCcCHHHHHHHHHHHHhC
Q 023335 245 SATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
||++|.|++++|++|.+.+++
T Consensus 161 Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 161 SSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CTTTCTTHHHHHHHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998764
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=8.7e-31 Score=217.79 Aligned_cols=166 Identities=14% Similarity=0.260 Sum_probs=110.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEECCe--EEEEEEEeCCCCCCcccchhhhcccC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMVQGA--RIAFSIWDVGGDSRSFDHVPIACKDA 171 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~a 171 (283)
...+||+|+|++|||||||+ +++++ .+. .+.+|++.++....+.+++. .+.+.+|||+|++.+..++..+++++
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45799999999999999999 99998 777 55568888888888989887 89999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhHCC----CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 172 VAILFMFDLTSRCTLNSIVGWYSEARKWNQ----TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 172 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~----~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
|++|+|||++++++|+.+..|+..+..+.. ..|++||+||+|+. .....+..+++.++++.++++++++||+
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~----~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 173 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP----PQRHQVRLDMAQDWATTNTLDFFDVSAN 173 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-----------CCCHHHHHHHHHHTTCEEEECCC-
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc----hhhccCCHHHHHHHHHHcCCEEEEeccC
Confidence 999999999999999999999999998865 45558999999972 1023344788999999999999999999
Q ss_pred C-CcCHHHHHHHHHHHHhCCc
Q 023335 248 H-NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 248 ~-~~~v~~lf~~l~~~i~~~~ 267 (283)
+ |.|++++|++|.+.+.+..
T Consensus 174 ~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 174 PPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp ------CHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999887543
No 76
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.1e-30 Score=211.65 Aligned_cols=163 Identities=13% Similarity=0.212 Sum_probs=138.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+|+|++|||||||+ +++++.+. .+.+|.+.++ ...+.+++..+.+.+|||+|++. ..++..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i 102 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF 102 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence 345799999999999999999 99999888 4445666554 56677889999999999999988 77888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCc-C
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNI-N 251 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-~ 251 (283)
|+|||++++++|+.+..|+..+.... .+.|++||+||+|+. ..+.+..+++.++++.++++++++||++|. |
T Consensus 103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-----HSRQVSTEEGEKLATELACAFYECSACTGEGN 177 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHhCCeEEEECCCcCCcC
Confidence 99999999999999999999988763 356668999999962 123345788889999999999999999999 9
Q ss_pred HHHHHHHHHHHHhCC
Q 023335 252 VNKIFKFIMAKLFNL 266 (283)
Q Consensus 252 v~~lf~~l~~~i~~~ 266 (283)
|+++|++|++.+.++
T Consensus 178 i~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 178 ITEIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988653
No 77
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=9.8e-31 Score=215.45 Aligned_cols=165 Identities=15% Similarity=0.102 Sum_probs=136.8
Q ss_pred CCceeeEEEEEcCCCCcHHHhHhhhcCccc-cc-----------cccceeeeeEEEE-EECCeEEEEEEEeCCCCCCccc
Q 023335 96 SDLVSLKISLLGDCQIGKTSFVKYVGNEQE-RS-----------LQMAGLNLINKTL-MVQGARIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi~~~~~~~~-~~-----------~~t~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~ 162 (283)
.....+||+|+|++|||||||++++.+.+. .+ .+|.+.++....+ .+++..+.+++|||+|++.|..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 445689999999999999999944444444 32 2466667666555 6778889999999999999999
Q ss_pred chhhhcccCcEEEEEEECC------ChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH
Q 023335 163 HVPIACKDAVAILFMFDLT------SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA 236 (283)
Q Consensus 163 ~~~~~~~~ad~iilv~D~~------~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~ 236 (283)
++..+++++|++|+|||++ +.++|+.+..|+.+++....+.|.+||+||+||. . ....++++++++.
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~----~---~~~~~~~~~~~~~ 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP----D---ALPVEMVRAVVDP 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST----T---CCCHHHHHHHHCT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc----c---ccCHHHHHHHHHh
Confidence 9999999999999999999 6678888889999886555566778999999972 1 2457888999999
Q ss_pred cCC-cEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 237 MKA-TLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 237 ~~~-~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+++ +++++||++|.||+++|++|.+.+.+..
T Consensus 163 ~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 999 9999999999999999999999887643
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=8.2e-30 Score=214.18 Aligned_cols=169 Identities=22% Similarity=0.261 Sum_probs=140.7
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
.....+||+|+|++|||||||+ +++++.+. ...+|.+.......+... +..+.+.+|||+|++.+..+...+++++|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 3445899999999999999999 99998887 445577777666655554 44588999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcC
Q 023335 173 AILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNIN 251 (283)
Q Consensus 173 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 251 (283)
++|+|||+++..+++++..|+..+...... .|.++|+||+|+. .......+++..+++..+++++++||++|.|
T Consensus 87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 161 (218)
T 4djt_A 87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK-----NRQKISKKLVMEVLKGKNYEYFEISAKTAHN 161 (218)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC---------CCHHHHHHHTTTCCCEEEEEBTTTTBT
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc-----cccccCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999999999999999999999887654 5558999999972 2234457778888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccc
Q 023335 252 VNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 252 v~~lf~~l~~~i~~~~~~ 269 (283)
++++|++|.+.+.+....
T Consensus 162 v~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 162 FGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhccccc
Confidence 999999999999886643
No 79
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=203.78 Aligned_cols=161 Identities=18% Similarity=0.278 Sum_probs=136.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+. ...++.+..+ ...+..++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 689999999999999999 99998887 4555666554 35567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
||++++++++.+..|+..+.... ++.|+++|+||+|+. ..+....+++..+++.++++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-----~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-----PSREVQSSEAEALARTWKCAFMETSAKLNHNVKE 156 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-----GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-----cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHH
Confidence 99999999999999998887763 356778999999962 1223346778888999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+...
T Consensus 157 l~~~l~~~~~~~ 168 (172)
T 2erx_A 157 LFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHTCCSS
T ss_pred HHHHHHHHHhhh
Confidence 999999876543
No 80
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=3.8e-30 Score=213.11 Aligned_cols=163 Identities=20% Similarity=0.218 Sum_probs=125.4
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEE--EEC-CeEEEEEEEeCCCCCCcccch---hhhc
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTL--MVQ-GARIAFSIWDVGGDSRSFDHV---PIAC 168 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~~~~l~i~Dt~G~~~~~~~~---~~~~ 168 (283)
.....+||+++|++|||||||+ ++.+..... ++.+.++..+.+ .+. +..+.+++|||+|+++|..+. ..++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF 93 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence 3345899999999999999999 776643223 344444433333 333 567889999999999998877 8999
Q ss_pred ccCcEEEEEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC-----cccchHHHHHHHHH----Hc
Q 023335 169 KDAVAILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD-----LQWTIATQARAYAK----AM 237 (283)
Q Consensus 169 ~~ad~iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-----~~~~~~~~~~~~~~----~~ 237 (283)
+++|++|+|||++++ ++++.+..|+.++....++.|++|||||+|| .+++ .+.+..++...+++ .+
T Consensus 94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG---LSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc---CchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 999999999999997 7778888888888777777777899999997 2211 12333566778888 67
Q ss_pred CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 238 KATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 238 ~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+++|+++||++ .||+++|+.+++.++
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred CcceEEEEech-hhHHHHHHHHHHHhC
Confidence 88999999999 999999999998763
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2e-29 Score=208.27 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=138.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ +++++.+. .+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 4689999999999999999 99998887 4455666444 3556778889999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|||++++++|+.+..|+..+.... ++.|+++|+||+|+. . ..+..+++..+++.++++++++||++|.||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~---~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 159 (199)
T 2gf0_A 86 VFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET---Q---REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159 (199)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS---S---CSSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC---c---cccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Confidence 999999999999998988877653 345668999999972 1 2344677888999999999999999999999
Q ss_pred HHHHHHHHHHhCCcc
Q 023335 254 KIFKFIMAKLFNLPW 268 (283)
Q Consensus 254 ~lf~~l~~~i~~~~~ 268 (283)
++|++|.+.+.+...
T Consensus 160 ~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 160 ELFQELLTLETRRNM 174 (199)
T ss_dssp HHHHHHHHHCSSSCE
T ss_pred HHHHHHHHHHhhhhc
Confidence 999999998876643
No 82
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=8.9e-30 Score=208.83 Aligned_cols=164 Identities=16% Similarity=0.341 Sum_probs=125.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC--ccc-cccccceeeeeEEEEEE---CCeEEEEEEEeCCCCCCcccchhhhcccCc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN--EQE-RSLQMAGLNLINKTLMV---QGARIAFSIWDVGGDSRSFDHVPIACKDAV 172 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~--~~~-~~~~t~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 172 (283)
++||+|+|++|||||||+ ++++. .+. .+.+|.|.++..+.+.+ ++..+.+.+|||+|+++|..+++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999 99985 454 45668888887766554 345788999999999999999999999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc---hHHHHHHHHHHcCCc----EEEE
Q 023335 173 AILFMFDLTSR-CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT---IATQARAYAKAMKAT----LFFS 244 (283)
Q Consensus 173 ~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~---~~~~~~~~~~~~~~~----~~e~ 244 (283)
++++|||++++ .+|+.+..|+.++....++.|++|||||+|+ .+. ... ..+....+++.++++ ++++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDV----SDE-KQRKACMSKITKELLNKRGFPAIRDYHFV 156 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGG----CCH-HHHHHHHHHHHHHTTTCTTSCEEEEEEEC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCc----ccc-hhhHHHHHHHHHHHHHhcCCcchhheEEE
Confidence 99999999997 5899999999999887766677899999996 221 111 134556777777887 9999
Q ss_pred cCCCCc-CHHHHHHHHHHHHhCCcc
Q 023335 245 SATHNI-NVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 245 Sa~~~~-~v~~lf~~l~~~i~~~~~ 268 (283)
||++|. +++++++.|.+.+.+..+
T Consensus 157 Sa~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 157 NATEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHCC--
T ss_pred ecccCchhHHHHHHHHHHHHhcccc
Confidence 999996 999999999999887654
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=4.8e-29 Score=205.97 Aligned_cols=162 Identities=15% Similarity=0.204 Sum_probs=124.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcccc-c-cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER-S-LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....||+|+|++|||||||+ +++++.+.. . .+|.+... ..+. +..+.+.+|||+|++.+..++..+++++|++
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 90 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE--KGRVAFTVFDMGGAKKFRGLWETYYDNIDAV 90 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE--ETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE--eCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence 34789999999999999999 999999875 3 55777443 3333 3457799999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC---------CCCceEEEeecCCCCCCCCCCcccchHH-H-HHHHHHHcCCcEEE
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN---------QTAIPILIGTKFDDFVRLPPDLQWTIAT-Q-ARAYAKAMKATLFF 243 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~---------~~~~~ilvgnK~DL~~~l~~~~~~~~~~-~-~~~~~~~~~~~~~e 243 (283)
|+|||+++.++|+.+..|+..+.... .+.|.|||+||+||.. ........+ . ...+++..++++++
T Consensus 91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (199)
T 4bas_A 91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG---AKTAAELVEILDLTTLMGDHPFVIFA 167 (199)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT---CCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC---CCCHHHHHHHhcchhhccCCeeEEEE
Confidence 99999999999999999998886641 2556689999999732 111111111 1 12222557789999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCC
Q 023335 244 SSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
+||++|.||+++|++|.+.+.+.
T Consensus 168 ~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 168 SNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred eeCCCccCHHHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.96 E-value=6.4e-29 Score=200.03 Aligned_cols=161 Identities=18% Similarity=0.238 Sum_probs=126.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+....+|.+... ..+.++ .+.+.+|||+|++.+..++..+++++|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 3689999999999999999 999998887777776543 455565 46789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
||++++++|+.+..|+..+.... .+.|+++|+||+|+.. ....... ......+++..+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ---AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcC---CCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 99999999999999988876542 4556689999999722 1111111 1111222334567899999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.++
T Consensus 159 l~~~l~~~i~~~ 170 (171)
T 1upt_A 159 AMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999988654
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=6.3e-29 Score=203.89 Aligned_cols=160 Identities=15% Similarity=0.167 Sum_probs=123.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+....+|.+... ..+.+++ +.+.+|||+|++++..++..+++++|++|+|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 4689999999999999999 999888876666777543 4556665 7789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 250 (283)
||++++++|+.+..|+.++... ..+.|+++|+||+|+.. . ...+++.+.. +..+++++++||++|.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----C---MTVAEISQFLKLTSIKDHQWHIQACCALTGE 163 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC----C---CCHHHHHHHhChhhhcCCCcEEEEccCCCCc
Confidence 9999999999999999998875 24566689999999721 1 1122333322 2346689999999999
Q ss_pred CHHHHHHHHHHHHhCCccc
Q 023335 251 NVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~~~~ 269 (283)
|++++|++|++.+...+..
T Consensus 164 gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 164 GLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp THHHHHHHHHHHHCC----
T ss_pred CHHHHHHHHHHHHHHHhhh
Confidence 9999999999998776543
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=3e-29 Score=200.83 Aligned_cols=158 Identities=18% Similarity=0.194 Sum_probs=121.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEE
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFD 179 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D 179 (283)
+||+++|++|||||||+ +++++.+..+.||.+.. ...+..+ .+.+.+|||+|++.+..++..+++++|++++|||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECS--SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEEC--CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999 99998888767777743 3344444 4678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHHHH
Q 023335 180 LTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNKIF 256 (283)
Q Consensus 180 ~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 256 (283)
++++++|+.+..|+..+... ..+.|+++|+||+|+.. ....... .......++..+++++++||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcC---CCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999999999999888764 23556689999999722 1110111 111111122235679999999999999999
Q ss_pred HHHHHHHhC
Q 023335 257 KFIMAKLFN 265 (283)
Q Consensus 257 ~~l~~~i~~ 265 (283)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999988754
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.3e-28 Score=201.01 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=124.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc-cc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
..+||+|+|++|||||||+ +++++. +. ...+|.+ +....+.+++ +.+.+|||+|++.+..++..+++++|++|
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 4699999999999999999 999988 44 4455666 3445666665 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC----CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcC
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN----QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~----~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa 246 (283)
+|||+++.++|+.+..|+..+.... .+.|+++|+||+|+.. . ...+++.+++. ..+++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa 168 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD----A---VTSVKVSQLLCLENIKDKPWHICASDA 168 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT----C---CCHHHHHHHHTGGGCCSSCEEEEECBT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc----C---CCHHHHHHHhChhhccCCceEEEEccC
Confidence 9999999999999999999887753 3556689999999721 1 12344444442 23578999999
Q ss_pred CCCcCHHHHHHHHHHHHhC
Q 023335 247 THNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i~~ 265 (283)
++|.||+++|++|.+.+.+
T Consensus 169 ~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 169 IKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTTBTHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHHHHH
Confidence 9999999999999987743
No 88
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=3.5e-29 Score=204.53 Aligned_cols=153 Identities=15% Similarity=0.199 Sum_probs=122.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+....+|.+... ..+.+++ +.+.+|||+|++++..++..+++++|++|+|
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4699999999999999999 999998865566777554 4555665 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 250 (283)
||+++.++|+.+..|+..+... ..+.|+++|+||+||.. . ...+++.+.. +..+++++++||++|.
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE----C---MTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----C---CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc----C---CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 9999999999999999888765 34566689999999722 1 1122222222 2345689999999999
Q ss_pred CHHHHHHHHHHH
Q 023335 251 NVNKIFKFIMAK 262 (283)
Q Consensus 251 ~v~~lf~~l~~~ 262 (283)
||+++|++|.+.
T Consensus 169 gi~~l~~~l~~~ 180 (181)
T 2h17_A 169 GLCQGLEWMMSR 180 (181)
T ss_dssp THHHHHHHHHTC
T ss_pred CHHHHHHHHHhh
Confidence 999999998764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=1.6e-28 Score=203.97 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=119.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++.++.+....+|.+.+. ..+.+++ +.+.+|||+|++.+..++..+++++|++++|
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 4689999999999999999 999988876666776653 5667777 7789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-----------------cC
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-----------------MK 238 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-----------------~~ 238 (283)
||++++++|+++..|+.++.+. ..+.|.++|+||+|+.. ....+++.+++.. .+
T Consensus 100 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (198)
T 1f6b_A 100 VDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-------AISEERLREMFGLYGQTTGKGSVSLKELNARP 172 (198)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-------CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCC
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-------cCCHHHHHHHhCcccccccccccccccccCce
Confidence 9999999999999999988764 24566689999999721 2335566666542 34
Q ss_pred CcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 239 ATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 239 ~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
++++++||++|+||+++|++|.+.+
T Consensus 173 ~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 173 LEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHhc
Confidence 5799999999999999999997643
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=9.2e-29 Score=204.32 Aligned_cols=162 Identities=16% Similarity=0.197 Sum_probs=120.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
....+||+|+|++|||||||+ +++++.+..+.||.+.. ...+..++ +.+.+|||+|++.+..++..+++++|++|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 345799999999999999999 99999887666676633 34555544 67899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
+|||++++++|+.+..|+..+.... .+.|++||+||+|+... ...... ......+++..+++++++||++|.||
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi 178 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA---MPVSELTDKLGLQHLRSRTWYVQATCATQGTGL 178 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence 9999999999999999998887542 35566899999997221 110111 11111112223457999999999999
Q ss_pred HHHHHHHHHHHhC
Q 023335 253 NKIFKFIMAKLFN 265 (283)
Q Consensus 253 ~~lf~~l~~~i~~ 265 (283)
+++|++|.+.+.+
T Consensus 179 ~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 179 YDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988754
No 91
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=2.9e-29 Score=206.35 Aligned_cols=157 Identities=16% Similarity=0.226 Sum_probs=123.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+|+|++|||||||+ +++++.+. ...+|.+.++. .+... .+.+.+|||+|++.+..++..+++++|++|+
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVY 96 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEE
Confidence 4799999999999999999 99999887 56668777764 33333 4678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH----HHHcCCcEEEEcCCCCc
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY----AKAMKATLFFSSATHNI 250 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~----~~~~~~~~~e~Sa~~~~ 250 (283)
|||+++.++|+.+..|+..+... ..+.|++||+||+|+.. ... ..+....+ +...+++++++||++|.
T Consensus 97 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 170 (188)
T 1zd9_A 97 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG---ALD---EKELIEKMNLSAIQDREICCYSISCKEKD 170 (188)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCcc---CCC---HHHHHHHhChhhhccCCeeEEEEECCCCC
Confidence 99999999999999999888764 24566689999999722 111 11111111 12235678999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 023335 251 NVNKIFKFIMAKLFN 265 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~ 265 (283)
||+++|++|.+.+..
T Consensus 171 gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 171 NIDITLQWLIQHSKS 185 (188)
T ss_dssp THHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999987754
No 92
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.96 E-value=3.7e-28 Score=200.36 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=125.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
...+||+++|++|||||||+ ++.++.+..+.+|.+.+ ...+.+++ +.+.+|||+|++.+..++..+++++|++++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 34689999999999999999 99999887666676664 45667777 778999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH------------cCCcEE
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA------------MKATLF 242 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~ 242 (283)
|||++++++|+++..|+.++... ..+.|.++|+||+|+.. ....+++.+.+.. .+++++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN-------AVSEAELRSALGLLNTTGSQRIEGQRPVEVF 169 (190)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT-------CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC-------CCCHHHHHHHhCCccccccccccccceEEEE
Confidence 99999999999999999988764 24556689999999721 2234455554432 356799
Q ss_pred EEcCCCCcCHHHHHHHHHHH
Q 023335 243 FSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~ 262 (283)
++||++|.||+++|++|.+.
T Consensus 170 ~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 170 MCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EeECCcCCCHHHHHHHHHhh
Confidence 99999999999999999764
No 93
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=4.6e-29 Score=204.15 Aligned_cols=157 Identities=16% Similarity=0.203 Sum_probs=122.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ ++.++.+....+|.|.. ...+.+++ +.+.+|||+|++.+..++..+++++|++++|
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN--IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE--EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE--EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 4699999999999999999 99988776666677744 34556664 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~~~~ 250 (283)
||++++++|+.+..|+.++... ..+.|.++|+||+|+.. .. . .++..+. +...+++++++||++|.
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~----~~--~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 163 (181)
T 1fzq_A 91 IDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLT----AA--P-ASEIAEGLNLHTIRDRVWQIQSCSALTGE 163 (181)
T ss_dssp EETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTT----CC--C-HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred EECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCccc----CC--C-HHHHHHHhCchhccCCceEEEEccCCCCC
Confidence 9999999999999998887553 23556689999999721 11 1 1222211 12235679999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 023335 251 NVNKIFKFIMAKLFNL 266 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~~ 266 (283)
||+++|++|.+.+.++
T Consensus 164 gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 164 GVQDGMNWVCKNVNAK 179 (181)
T ss_dssp THHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999877543
No 94
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.95 E-value=3.2e-27 Score=194.99 Aligned_cols=161 Identities=25% Similarity=0.441 Sum_probs=141.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+|+|++|||||||+ ++++..+. .+.+|.+.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45799999999999999999 99998887 66678899998899999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
+|||+++..+|+++..|+..+..... ..+.++|+||+||. .......++++.++...++.++++||+++.|+++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~ 181 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc-----cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 99999999999999999998877654 44557999999962 1223346778899999999999999999999999
Q ss_pred HHHHHHHHH
Q 023335 255 IFKFIMAKL 263 (283)
Q Consensus 255 lf~~l~~~i 263 (283)
+|+.|.+.+
T Consensus 182 l~~~l~~~i 190 (191)
T 1oix_A 182 AFQTILTEI 190 (191)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998876
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.95 E-value=3.7e-27 Score=195.55 Aligned_cols=163 Identities=26% Similarity=0.479 Sum_probs=140.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
..+||+++|++|||||||+ ++++..+. .+.+|.+.++....+.+++..+.+.+||++|++.+..+...++++++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 4699999999999999999 99999887 566788888888899999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
|||+++..+|+++..|+..+..... ..+.++|+||+||. .......++++.++...++.++++||+++.|++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~-----~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR-----HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG-----GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc-----cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999998877654 44557999999972 22233467788999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 023335 256 FKFIMAKLFNL 266 (283)
Q Consensus 256 f~~l~~~i~~~ 266 (283)
|+.|.+.+.+.
T Consensus 159 ~~~l~~~~~~~ 169 (199)
T 2f9l_A 159 FKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=2.6e-28 Score=200.45 Aligned_cols=161 Identities=17% Similarity=0.205 Sum_probs=125.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+....+|.+.. ...+.+++ +.+.+|||+|++.+..++..+++++|++|+|
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVN--LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCC--EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceE--EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEEE
Confidence 4799999999999999999 99998887766777744 34555554 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
||++++++|+.+..|+..+.... .+.|+++|+||+|+.. ....... .......++..+++++++||++|.|+++
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD---AASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVE 173 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT---CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC---CCCHHHHHHHhChhhccCCceEEEEccCCCccCHHH
Confidence 99999999999999988887642 3556689999999721 1111111 1111112233456799999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|++|.+.+.+.
T Consensus 174 l~~~l~~~i~~~ 185 (189)
T 2x77_A 174 GMDWLVERLREQ 185 (189)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988654
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.92 E-value=2.1e-30 Score=215.71 Aligned_cols=166 Identities=23% Similarity=0.335 Sum_probs=136.7
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
....+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++++..++..+++++|++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 346799999999999999999 99998887 4444555443 55667788888999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC-------cccchHHHHHHHHHHcCC-cEEEEc
Q 023335 175 LFMFDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD-------LQWTIATQARAYAKAMKA-TLFFSS 245 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~-------~~~~~~~~~~~~~~~~~~-~~~e~S 245 (283)
|+|||++++++|+++. .|+..+....++.|+++|+||+|+....... ......+++.++++.+++ +++++|
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS 185 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 185 (204)
Confidence 9999999999999997 8999988876666778999999973211000 012346778888888888 899999
Q ss_pred CCCCcCHHHHHHHHHHHH
Q 023335 246 ATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i 263 (283)
|++|.||+++|++|.+.+
T Consensus 186 A~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 186 ALTQRGLKTVFDEAIRAV 203 (204)
Confidence 999999999999998765
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=1.7e-27 Score=212.05 Aligned_cols=166 Identities=23% Similarity=0.331 Sum_probs=140.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
.+||+++|++|||||||+ +++++.+. .+.+|++..+ ...+.+++..+.+.+|||+|++.+..+...+++++|++++|
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 589999999999999999 99999887 4445665444 56778899999999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCC-------CCcccchHHHHHHHHHHcCC-cEEEEcCCC
Q 023335 178 FDLTSRCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLP-------PDLQWTIATQARAYAKAMKA-TLFFSSATH 248 (283)
Q Consensus 178 ~D~~~~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~-------~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~ 248 (283)
||++++.+|+++. .|+..+....++.|+++|+||+||..... .....+..+++.++++.+++ +++++||++
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 313 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCC
Confidence 9999999999997 89999998877777789999999621100 00123447888999999997 899999999
Q ss_pred CcCHHHHHHHHHHHHhCC
Q 023335 249 NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~ 266 (283)
|.||+++|+.|.+.+++.
T Consensus 314 ~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 314 QRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTHHHHHHHHHHHHHC-
T ss_pred CcCHHHHHHHHHHHHhcC
Confidence 999999999999988764
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.95 E-value=6.5e-28 Score=197.40 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=125.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
...+||+++|++|||||||+ +++++......+|.+.. ...+.+++ +.+.+|||+|++++..++..+++++|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFN--IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEE--EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35799999999999999999 99988844666777744 34555654 678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHH-----HHcCCcEEEEcCCCC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYA-----KAMKATLFFSSATHN 249 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~ 249 (283)
|||++++++|+++..|+.++... ..+.|+++|+||+|+.. . .. .++..+.. +..+++++++||++|
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~--~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG----A--LS-CNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT----C--CC-HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC----C--CC-HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 99999999999999999888765 24566689999999721 1 11 22222221 234568999999999
Q ss_pred cCHHHHHHHHHHHHhCC
Q 023335 250 INVNKIFKFIMAKLFNL 266 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~ 266 (283)
.|++++|++|.+.+.++
T Consensus 165 ~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999998765
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4.4e-28 Score=197.61 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=121.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFM 177 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv 177 (283)
..+||+++|++|||||||+ +++++.+....+|.+.. ...+.+++ +.+.+|||+|++.+..++..+++++|++++|
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 92 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFN--VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFV 92 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCC--EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccc--eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999 99998886666677744 34555655 6789999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH-----HcCCcEEEEcCCCCc
Q 023335 178 FDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-----AMKATLFFSSATHNI 250 (283)
Q Consensus 178 ~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~ 250 (283)
||++++++|+.+..|+..+.... .+.|+++|+||+|+.. . ...+++.+... ..+++++++||++|.
T Consensus 93 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~----~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~ 165 (183)
T 1moz_A 93 VDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG----A---LSASEVSKELNLVELKDRSWSIVASSAIKGE 165 (183)
T ss_dssp EETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT----C---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTB
T ss_pred EECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC----C---CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 99999999999999999887653 4556689999999722 1 11222322221 224579999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 023335 251 NVNKIFKFIMAKLFN 265 (283)
Q Consensus 251 ~v~~lf~~l~~~i~~ 265 (283)
|++++|++|.+.+.+
T Consensus 166 gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 166 GITEGLDWLIDVIKE 180 (183)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=6.5e-29 Score=219.68 Aligned_cols=166 Identities=16% Similarity=0.182 Sum_probs=129.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---chhhhcccCcE
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---HVPIACKDAVA 173 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~ad~ 173 (283)
||+++|+.|||||||+ ++.++.+.. ..+|.|.++.. ++ ..+++++|||+||++|.. ..+.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 7999999999999999 887665432 34577877653 23 358899999999999974 46889999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----ccchHHHHHHHHHH----cCCcEE
Q 023335 174 ILFMFDLTSR--CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----QWTIATQARAYAKA----MKATLF 242 (283)
Q Consensus 174 iilv~D~~~~--~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----~~~~~~~~~~~~~~----~~~~~~ 242 (283)
+|+|||++++ ++++.+..|+.++....++.|++|+|||+|| .+++. +.+..++++++++. +++.||
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL---~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~ 152 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDG---LSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFY 152 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCS---SCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECccc---CchhhhhhHHHHhhHHHHHHHHhhcccccCceEE
Confidence 9999999998 3444445556777667777777899999997 33222 23446778888886 688999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCCccccccccCC
Q 023335 243 FSSATHNINVNKIFKFIMAKLFNLPWTVKRNLTI 276 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~ 276 (283)
||||++ .||.++|..+++.++.+....++.++.
T Consensus 153 eTSAkd-~nV~eAFs~iv~~li~~~~~le~~L~~ 185 (331)
T 3r7w_B 153 LTSIFD-HSIYEAFSRIVQKLIPELSFLENMLDN 185 (331)
T ss_dssp CCCSSS-SHHHHHHHHHHTTSSTTHHHHHHHHTG
T ss_pred EeccCC-CcHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999998 589999999999999888777666543
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.7e-28 Score=209.85 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=122.9
Q ss_pred ceeeEEEEEcCC---------CCcHHHhH-hhhc---Cccc-cccccc-eeeeeEEEEE--------------ECCeEEE
Q 023335 98 LVSLKISLLGDC---------QIGKTSFV-KYVG---NEQE-RSLQMA-GLNLINKTLM--------------VQGARIA 148 (283)
Q Consensus 98 ~~~~KI~vlG~~---------~vGKSSLi-~~~~---~~~~-~~~~t~-~~~~~~~~~~--------------~~~~~~~ 148 (283)
...+||+|+|++ |||||||+ +|++ +.+. .+.+|+ +.++..+.+. +++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 347999999999 99999999 9999 5555 455554 5554433322 4677899
Q ss_pred EEEEe-----------------------CCCCCCcccchhhhcc---------------------cCcEEEEEEECCCh-
Q 023335 149 FSIWD-----------------------VGGDSRSFDHVPIACK---------------------DAVAILFMFDLTSR- 183 (283)
Q Consensus 149 l~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~ad~iilv~D~~~~- 183 (283)
++||| ++|+++|..++..+++ ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888888888888 89999999999998
Q ss_pred -hhHHHHHHHHHHHHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-cCCcEEEEcCCCCcCHHHHHHHH
Q 023335 184 -CTLNSIVGWYSEARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-MKATLFFSSATHNINVNKIFKFI 259 (283)
Q Consensus 184 -~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~e~Sa~~~~~v~~lf~~l 259 (283)
+||+.+..|+.++... ..+.|++|||||+|| .. .+. .++++++++. .+++++++||++|.||+++|++|
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl----~~--~~~-v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE----GV--ERY-IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGG----BC--HHH-HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccc----cc--cHH-HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999998875 345667899999996 11 122 2577788876 48899999999999999999999
Q ss_pred HHHHh
Q 023335 260 MAKLF 264 (283)
Q Consensus 260 ~~~i~ 264 (283)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98763
No 103
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=4.6e-27 Score=189.27 Aligned_cols=152 Identities=15% Similarity=0.097 Sum_probs=115.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc-
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK- 169 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~- 169 (283)
..+||+++|++|||||||+ ++++..+. ..+++++.+.....+.+++ ..+.+|||+|++.+. .+...|++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 3689999999999999999 99988765 6667666676666777776 468899999999875 33456665
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 170 -DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 170 -~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
++|++++|||+++.+ ....|+.++.+. +.|.++|+||+|+.. ......++.++++.++++++++||++
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~~--~~p~ilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLMEM--GANLLLALNKMDLAK------SLGIEIDVDKLEKILGVKVVPLSAAK 148 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHHT--TCCEEEEEECHHHHH------HTTCCCCHHHHHHHHTSCEEECBGGG
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHhc--CCCEEEEEEchHhcc------ccChhhHHHHHHHHhCCCEEEEEcCC
Confidence 899999999998854 345688777652 456689999999621 11111246778888899999999999
Q ss_pred CcCHHHHHHHHHHHH
Q 023335 249 NINVNKIFKFIMAKL 263 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i 263 (283)
|.||+++|+++.+.+
T Consensus 149 ~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 149 KMGIEELKKAISIAV 163 (165)
T ss_dssp TBSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 104
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=5e-27 Score=196.56 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=114.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCe-EEEEEEEeCCCCCCccc-chhhhcccCcEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGA-RIAFSIWDVGGDSRSFD-HVPIACKDAVAI 174 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~-~~~~~~~~ad~i 174 (283)
...+||+++|++|||||||+ +++++.+...+++++.++.. +.+++. .+.+.+|||+|++.+.. ++..|++++|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35789999999999999999 99999988767776666553 566654 58899999999999987 788899999999
Q ss_pred EEEEECCChh-hHHHHHH-HHHHHHhH---CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH--------------
Q 023335 175 LFMFDLTSRC-TLNSIVG-WYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK-------------- 235 (283)
Q Consensus 175 ilv~D~~~~~-s~~~~~~-~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~-------------- 235 (283)
|+|||+++.+ ++..+.. |...+... ..+.|.+||+||+||.. ........+.+.+...
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM---AKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT---CCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCC---cccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 9999999854 4666654 44444432 23455689999999732 2111112222222211
Q ss_pred -------------------Hc--CCcEEEEcCCCC------cCHHHHHHHHHHH
Q 023335 236 -------------------AM--KATLFFSSATHN------INVNKIFKFIMAK 262 (283)
Q Consensus 236 -------------------~~--~~~~~e~Sa~~~------~~v~~lf~~l~~~ 262 (283)
.+ ++.|+++||++| .||+++|++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.94 E-value=6.7e-27 Score=207.23 Aligned_cols=164 Identities=18% Similarity=0.198 Sum_probs=130.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc--ccc--ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-----ccchhhhc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QER--SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-----FDHVPIAC 168 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~ 168 (283)
..+||+++|++|||||||+ +++++. +.. +.+|.+.++. .+.+++ .+.+.+|||+|++.+ ..++..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 3689999999999999999 998873 332 2335565554 444544 678999999999988 78889999
Q ss_pred ccCcEEEEEEECCChhhHHHHHHH---HHHHHhHCCCCceEEEeecCCCCCCCCCCccc----chHHHHHHHHHHcC---
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGW---YSEARKWNQTAIPILIGTKFDDFVRLPPDLQW----TIATQARAYAKAMK--- 238 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~---~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~----~~~~~~~~~~~~~~--- 238 (283)
+++|++|+|||++++++|+++..| +.++....++.|.+|||||+|+ ..++.+. ...+++.++++.+|
T Consensus 79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl---~~~~~r~~~~~v~~~~~~~~~~~~g~~~ 155 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDL---VQLDKREELFQIMMKNLSETSSEFGFPN 155 (307)
T ss_dssp TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccc---cchhhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998766 4555555667777899999996 2211232 44688999999997
Q ss_pred CcEEEEcCCCCcCHHHHHHHHHHHHhCCccc
Q 023335 239 ATLFFSSATHNINVNKIFKFIMAKLFNLPWT 269 (283)
Q Consensus 239 ~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~~~ 269 (283)
++++++||++ .|+.++|..+++.+......
T Consensus 156 ~~~~~tSa~~-~~i~e~~~~iv~~li~~~~~ 185 (307)
T 3r7w_A 156 LIGFPTSIWD-ESLYKAWSQIVCSLIPNMSN 185 (307)
T ss_dssp CEEEECCTTS-SHHHHHHHHHHHTTCSCHHH
T ss_pred eEEEEeeecC-ChHHHHHHHHHHHHcCCHHH
Confidence 7899999999 89999999999887765543
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.94 E-value=5.6e-27 Score=209.66 Aligned_cols=162 Identities=18% Similarity=0.189 Sum_probs=119.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
...+||+|+|++|||||||+ ++.++.+....+|.+.++. .+... .+.+.||||+|++.|..++..+++.+|++|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEE--EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEE--EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35789999999999999999 9999998866677776653 34444 4678999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccch-HHHHHHHHHHcCCcEEEEcCCCCcCHH
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAYAKAMKATLFFSSATHNINVN 253 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 253 (283)
|||++++++|+.+..|+..+.... ++.|+|||+||+|+.. ....... .+.....++..+++++++||++|.||+
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~ 315 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN---AMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT---CCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc---ccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence 999999999999998887776543 3556689999999721 1111111 111111122234579999999999999
Q ss_pred HHHHHHHHHHhCC
Q 023335 254 KIFKFIMAKLFNL 266 (283)
Q Consensus 254 ~lf~~l~~~i~~~ 266 (283)
++|++|++.+.++
T Consensus 316 el~~~l~~~l~~~ 328 (329)
T 3o47_A 316 EGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=2e-26 Score=216.94 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=124.9
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEE
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAI 174 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~i 174 (283)
.....+||+|+|.+|||||||+ +++++.+....+|.+.++. .+.++ .+.+.+|||+|++.+..++..+++++|++
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE--TVTYK--NVKFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEESS--SCEEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEE--EEEeC--CEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 3445799999999999999999 9999998877788876654 34444 46789999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhHC--CCCceEEEeecCCCCCCCCCCcccchHHHHHHH-----HHHcCCcEEEEcCC
Q 023335 175 LFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPILIGTKFDDFVRLPPDLQWTIATQARAY-----AKAMKATLFFSSAT 247 (283)
Q Consensus 175 ilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~e~Sa~ 247 (283)
|+|||++++++|+.+..|+.++.... .+.|.|||+||+||.. .. ..++..+. +...+++++++||+
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD----AM---KPHEIQEKLGLTRIRDRNWYVQPSCAT 466 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS----CC---CHHHHHHHTTCTTCCSSCEEEEECBTT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc----CC---CHHHHHHHhchhhhhcCCeEEEEEECC
Confidence 99999999999999999998886642 3556689999999721 11 11222111 11224469999999
Q ss_pred CCcCHHHHHHHHHHHHhCCc
Q 023335 248 HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~~ 267 (283)
+|+||+++|++|.+.+.+..
T Consensus 467 ~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TTBTHHHHHHHHHHHCC---
T ss_pred CCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999876554
No 108
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=9.2e-26 Score=184.72 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=124.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK 169 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~ 169 (283)
+..+||+++|++|||||||+ ++++..+. ..+++++.+.....+.+++ ..+.+|||+|++.+. .+...+++
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 45799999999999999999 99987765 6677777777777777776 568899999999875 34566665
Q ss_pred --cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 170 --DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 170 --~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
.+|++++|+|.++ ++....|+.++.. .+.|.++|+||+|+.. .....+++.++++.++++++++||+
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~------~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAK------SLGIEIDVDKLEKILGVKVVPLSAA 151 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHH------HTTCCCCHHHHHHHHTSCEEECBGG
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccc------cccchHHHHHHHHHhCCCeEEEEec
Confidence 4999999999875 5666788888765 3456689999999621 1111235677888889999999999
Q ss_pred CCcCHHHHHHHHHHHHhCCc
Q 023335 248 HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~~ 267 (283)
+|.|++++|+++.+.+.+..
T Consensus 152 ~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 152 KKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp GTBSHHHHHHHHHHHHTTC-
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999987654
No 109
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.93 E-value=2.4e-25 Score=180.38 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=116.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAIL 175 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii 175 (283)
...+||+++|++|||||||+ +++++.+. .+.++++.++....+.+++.. +.+|||+|++.+..++..++..+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 34789999999999999999 99999887 556666667766777788754 678999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH-------cC--CcEEEEcC
Q 023335 176 FMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA-------MK--ATLFFSSA 246 (283)
Q Consensus 176 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~e~Sa 246 (283)
+|||+++....+.. .++..+. ..+.|+++|+||+|+. ... .++.....+. ++ ++++++||
T Consensus 84 ~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 84 LVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKP----EAN----PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSS----CSC----HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCC----cCC----HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 99999984332222 1222222 2345668999999972 111 1222222222 22 57999999
Q ss_pred CCCcCHHHHHHHHHHHHhCCc
Q 023335 247 THNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~i~~~~ 267 (283)
++|.|++++|++|.+.+....
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999999876543
No 110
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.93 E-value=2.8e-25 Score=188.18 Aligned_cols=165 Identities=16% Similarity=0.110 Sum_probs=118.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc---------cchhhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF---------DHVPIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------~~~~~~ 167 (283)
..+||+|+|++|||||||+ +++++.+. ..++.+..+.....+..++ +.+.+|||+|+.... .....+
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 4689999999999999999 99998876 4444333344434444444 568899999984311 112335
Q ss_pred cccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHHHHcC--CcEE
Q 023335 168 CKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYAKAMK--ATLF 242 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~~~~~--~~~~ 242 (283)
+..+|++|+|||++++.+|+. ...|+..+....++.|.++|+||+|+. ..... ....+....+++..+ ++++
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC---NMDSLSIDNKLLIKQILDNVKNPIKFS 182 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC---C--CCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC---CchhhHHHHHHHHHHHHHhcCCCceEE
Confidence 788999999999999988752 346777777655566778999999972 21111 112346777888877 8999
Q ss_pred EEcCCCCcCHHHHHHHHHHHHhCCcc
Q 023335 243 FSSATHNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
++||++|.||+++|++|.+.+.+..+
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 111
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.93 E-value=9.8e-26 Score=202.08 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=150.2
Q ss_pred hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCceee----EEEEEcCCCCcHHHhH-
Q 023335 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVSL----KISLLGDCQIGKTSFV- 117 (283)
Q Consensus 43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~~----KI~vlG~~~vGKSSLi- 117 (283)
.++++++.+|.+|.++.++.+++... |..+..|.++ +...-..++ +|+|+|.+|||||||+
T Consensus 111 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g---------~~~~~~leLk~la~V~lvG~~nvGKSTLln 176 (342)
T 1lnz_A 111 GQRAVIARGGRGGRGNSRFATPANPA-----PQLSENGEPG---------KERYIVLELKVLADVGLVGFPSVGKSTLLS 176 (342)
T ss_dssp TCEEEEECCCCCCCCGGGSCBTTBSS-----CCCCCCCCCC---------CEEEEEEEEECCCCEEEESSTTSSHHHHHH
T ss_pred CcEEEEeCCCCCccCccccccccccc-----cccccCCCCc---------chhhHhhhhhhcCeeeeeCCCCCCHHHHHH
Confidence 47899999999999998887766654 4444444332 111122233 5889999999999999
Q ss_pred hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCC----CCcccchhhhccc---CcEEEEEEECCC---hhhH
Q 023335 118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGD----SRSFDHVPIACKD---AVAILFMFDLTS---RCTL 186 (283)
Q Consensus 118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----~~~~~~~~~~~~~---ad~iilv~D~~~---~~s~ 186 (283)
++++..+. ..++.+..+.....+.+++ ...+.+|||+|. +.+..+...|++. +|++|+|||+++ ++++
T Consensus 177 ~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~ 255 (342)
T 1lnz_A 177 VVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY 255 (342)
T ss_dssp HSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHH
T ss_pred HHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChH
Confidence 99988765 5566333444444566654 236889999994 4456676777654 999999999999 8899
Q ss_pred HHHHHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHHH
Q 023335 187 NSIVGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 187 ~~~~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
+++..|+.++..+.+ +.|.+||+||+|+ .. ..+...++++.++ .+++++||++++|++++|++|.+
T Consensus 256 ~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl----~~-----~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~ 326 (342)
T 1lnz_A 256 DDYLTINQELSEYNLRLTERPQIIVANKMDM----PE-----AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVAN 326 (342)
T ss_dssp HHHHHHHHHHHHSCSSTTTSCBCBEEECTTS----TT-----HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEEECccC----CC-----CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHH
Confidence 999999999998753 5566899999996 11 1245667777776 68999999999999999999999
Q ss_pred HHhCCcc
Q 023335 262 KLFNLPW 268 (283)
Q Consensus 262 ~i~~~~~ 268 (283)
.+.+.++
T Consensus 327 ~l~~~~~ 333 (342)
T 1lnz_A 327 QLENTPE 333 (342)
T ss_dssp HHTSCCC
T ss_pred HHhhCcc
Confidence 9977654
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=6.6e-26 Score=215.24 Aligned_cols=165 Identities=20% Similarity=0.304 Sum_probs=125.5
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEE------EEE--CCeEEEEEEEeCCCCCCcccchh
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKT------LMV--QGARIAFSIWDVGGDSRSFDHVP 165 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~------~~~--~~~~~~l~i~Dt~G~~~~~~~~~ 165 (283)
.....+||+++|.+|||||||+ +++++.+. ...+|.|.++..+. +.+ ++..+.+.+|||+|++.+..+..
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456899999999999999999 99999987 55568888776542 122 33467899999999999999999
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
.+++++|++|+|||+++. +.+..|+.++..+.++.|.|||+||+|+. . ......+++++++...+++++++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~----~-~~~v~~~~~~~~~~~~~~~~~~vS 188 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDEN----P-SYNIEQKKINERFPAIENRFHRIS 188 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTC----T-TCCCCHHHHHHHCGGGTTCEEECC
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcc----c-ccccCHHHHHHHHHhcCCceEEEe
Confidence 999999999999998765 55678999999998778889999999972 1 223346778888888999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhCCcc
Q 023335 246 ATHNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
|++|.||+++|+.+.+.+.+.+.
T Consensus 189 A~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 189 CKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp C-----CTTHHHHHHHHHTCTTS
T ss_pred cCcccCHHHHHHHHHHHHhcccc
Confidence 99999999999999999987664
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=5.5e-26 Score=184.44 Aligned_cols=151 Identities=17% Similarity=0.179 Sum_probs=115.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 168 (283)
.+||+++|++|||||||+ ++++..+. ..+++++.++....+.+++.. +.+|||+|++.+.... ..++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 579999999999999999 99987653 556666777777888888754 7899999997653221 2367
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
+++|++++|||+++..+++. ..|+..+..... +.|.|+|+||+||.. .. . .+++..+++++++||+
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~---~~-~--------~~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITG---ET-L--------GMSEVNGHALIRLSAR 148 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHC---CC-C--------EEEEETTEEEEECCTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCc---ch-h--------hhhhccCCceEEEeCC
Confidence 99999999999999988764 578888877654 455689999999621 11 1 1122246789999999
Q ss_pred CCcCHHHHHHHHHHHHhC
Q 023335 248 HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~ 265 (283)
+|.||+++|++|.+.+..
T Consensus 149 ~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp TCTTHHHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999987644
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=1.1e-24 Score=179.35 Aligned_cols=155 Identities=17% Similarity=0.169 Sum_probs=106.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~ 166 (283)
..+||+|+|.+|||||||+ +++++.+. ...++.+.+.......+++ .+.+|||+| ++.+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 4689999999999999999 99998865 4444555444444444544 488999999 6667777788
Q ss_pred hcccC---cEEEEEEECCChhhHHHHH--HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHH-HHHHcCCc
Q 023335 167 ACKDA---VAILFMFDLTSRCTLNSIV--GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARA-YAKAMKAT 240 (283)
Q Consensus 167 ~~~~a---d~iilv~D~~~~~s~~~~~--~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~-~~~~~~~~ 240 (283)
+++.+ |++++|||+++..++.... .|+.. .+.|.++|+||+|+ ..........+++.+ ++...+++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY-----YGIPVIVIATKADK---IPKGKWDKHAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCGGGHHHHHHHHHHHHTCCTTSE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccc---CChHHHHHHHHHHHHHHcccCCCc
Confidence 88777 9999999999988877643 44432 35567899999997 221111111233333 33334678
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 241 LFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 241 ~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
++++||++|.|++++|++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998763
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.91 E-value=1.5e-24 Score=172.58 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc-------ccchhhhccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS-------FDHVPIACKD 170 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 170 (283)
.||+++|++|||||||+ ++.++.+. ...++++.+.....+..++. .+.+|||+|++.+ ......+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 58999999999999999 99988754 45555566666677777775 5789999998873 3345567899
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN 249 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 249 (283)
+|++++|||+++..+... ..+...+.. .+.|.++|+||+|+. +. .+++.+++ .+++ +++++||++|
T Consensus 80 ~~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~----~~-----~~~~~~~~-~~~~~~~~~~Sa~~~ 146 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDP----KH-----ELYLGPLY-GLGFGDPIPTSSEHA 146 (161)
T ss_dssp CSEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSG----GG-----GGGCGGGG-GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccc----cc-----hHhHHHHH-hCCCCCeEEEecccC
Confidence 999999999998654432 112222222 345678999999962 11 13344455 5677 8999999999
Q ss_pred cCHHHHHHHHHHHH
Q 023335 250 INVNKIFKFIMAKL 263 (283)
Q Consensus 250 ~~v~~lf~~l~~~i 263 (283)
.|++++|+++.+.+
T Consensus 147 ~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 147 RGLEELLEAIWERL 160 (161)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred CChHHHHHHHHHhC
Confidence 99999999998864
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.91 E-value=4.7e-24 Score=175.02 Aligned_cols=156 Identities=13% Similarity=0.134 Sum_probs=115.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC----------CCCcccchhhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG----------DSRSFDHVPIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~~ 167 (283)
..+||+++|++|||||||+ +++++.+....++.+.+........+. .+.+|||+| ++.+..+...+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDY 98 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHH
Confidence 4689999999999999999 999988665555555444433333333 467999999 55666777778
Q ss_pred cccC---cEEEEEEECCChhhH--HHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcE
Q 023335 168 CKDA---VAILFMFDLTSRCTL--NSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATL 241 (283)
Q Consensus 168 ~~~a---d~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~ 241 (283)
++.+ |++++|+|.++..+. ..+..|+... +.|.++|+||+|+ .+........+++++++...+ +++
T Consensus 99 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 99 FKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDK---VKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGG---SCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhc---CChHHHHHHHHHHHHHHhhcCCCce
Confidence 7766 999999999876443 3344555543 4567899999997 333333444677777777744 789
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 242 FFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+++||++|.||+++|++|.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999988754
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.91 E-value=1.3e-23 Score=186.06 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=131.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc----------cchh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF----------DHVP 165 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~----------~~~~ 165 (283)
..-.|+++|.+|||||||+ ++++..+. ...+.+..+.....+..+ ....+.+|||||...+. ....
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4679999999999999999 99998876 344433333333344444 14568899999997655 4556
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEE
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFF 243 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e 243 (283)
.+++++|++++|+|+++..++++...|++.+... +.|.++|+||+|+ .. ......+....+.+.++ .++++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl---~~--~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDK---IG--PAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGG---SS--SGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccC---CC--CHHHHHHHHHHHHHhccCCCeEEE
Confidence 7889999999999999999999888888888763 4567899999996 21 23445677778888876 78999
Q ss_pred EcCCCCcCHHHHHHHHHHHHhCCccccccccCCC
Q 023335 244 SSATHNINVNKIFKFIMAKLFNLPWTVKRNLTIG 277 (283)
Q Consensus 244 ~Sa~~~~~v~~lf~~l~~~i~~~~~~~~~~~~~~ 277 (283)
+||++|.|++++|+++.+.+.+.++........+
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td 194 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEGEPLFPEDMITD 194 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBC
T ss_pred EeCCCCCCHHHHHHHHHHhCccCCCCCCcccccC
Confidence 9999999999999999999988876655544333
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.91 E-value=8.1e-24 Score=182.90 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=119.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc------hhhhc-
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH------VPIAC- 168 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~- 168 (283)
...+||+++|++|||||||+ ++++..+. ..+++++.+.....+..++ ..+.+|||||+..+... ...|+
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 35789999999999999999 99998876 6667666666555665555 67899999999887653 35566
Q ss_pred -ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 169 -KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 169 -~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
.++|++++|+|+++.++. ..|..++... ..|.++|+||+|+. .......+..++++.++++++++||+
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~~--~~pvilv~NK~Dl~------~~~~i~~~~~~l~~~lg~~vi~~SA~ 149 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILEM--EKKVILAMTAIDEA------KKTGMKIDRYELQKHLGIPVVFTSSV 149 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHTT--TCCEEEEEECHHHH------HHTTCCBCHHHHHHHHCSCEEECCTT
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHhc--CCCEEEEEECcCCC------CccchHHHHHHHHHHcCCCEEEEEee
Confidence 589999999999987643 3466666543 45668999999961 11111234678888999999999999
Q ss_pred CCcCHHHHHHHHHHHHh
Q 023335 248 HNINVNKIFKFIMAKLF 264 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~ 264 (283)
+|.|++++|+++.+.+.
T Consensus 150 ~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 150 TGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhh
Confidence 99999999999999775
No 119
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=1e-24 Score=178.39 Aligned_cols=153 Identities=15% Similarity=0.173 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCC-----------CCCcccchhhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGG-----------DSRSFDHVPIA 167 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~~~ 167 (283)
+||+++|++|||||||+ +++++.+. .+.++++.+. ..+.++ .+.+|||+| ++.+..+...+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 69999999999999999 99999877 4455443333 344444 588999999 56667777788
Q ss_pred ccc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhH--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHH
Q 023335 168 CKD-AVAILFMFDLTSRCTLNSI-VGWYSE--------ARKW--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAK 235 (283)
Q Consensus 168 ~~~-ad~iilv~D~~~~~s~~~~-~~~~~~--------i~~~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~ 235 (283)
+++ ++++++||++.|..+++++ ..|... +... ..+.|.++|+||+|+ .... .++++++++
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl----~~~~----~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDK----IKNV----QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGG----CSCH----HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhc----cCcH----HHHHHHHHH
Confidence 887 9988899999989999887 577653 2221 235566899999996 2111 567788888
Q ss_pred HcCCc-------EEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 236 AMKAT-------LFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 236 ~~~~~-------~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
.++++ ++++||++|.|++++|++|.+.+.+..
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 88875 699999999999999999999886643
No 120
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=9.3e-24 Score=182.32 Aligned_cols=149 Identities=11% Similarity=0.069 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc----------chhhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD----------HVPIAC 168 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~ 168 (283)
.||+++|.+|||||||+ ++++..+. ...++++.+.....+.+++. .+.+|||||...+.. +...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999 99998766 77787777777778888775 688999999988764 456677
Q ss_pred --ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 169 --KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 169 --~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
.++|++|+|+|+++.+++..+..|+.+ ...|.++|+||+|+. . ..........+++.++++++++||
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~-----~~~pvilv~NK~Dl~---~---~~~~~~~~~~l~~~lg~~vi~~SA 148 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLTSQLFE-----LGKPVVVALNMMDIA---E---HRGISIDTEKLESLLGCSVIPIQA 148 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHHHHHTT-----SCSCEEEEEECHHHH---H---HTTCEECHHHHHHHHCSCEEECBG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHHHHHHH-----cCCCEEEEEEChhcC---C---cCCcHHHHHHHHHHcCCCEEEEEC
Confidence 899999999999997666554444332 245668999999962 1 111122345677888999999999
Q ss_pred CCCcCHHHHHHHHHHH
Q 023335 247 THNINVNKIFKFIMAK 262 (283)
Q Consensus 247 ~~~~~v~~lf~~l~~~ 262 (283)
++|.|++++|+++.+.
T Consensus 149 ~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 149 HKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGTBSHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999886
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=1.4e-23 Score=182.62 Aligned_cols=151 Identities=16% Similarity=0.063 Sum_probs=114.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc------cchhhhcc--
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------DHVPIACK-- 169 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~-- 169 (283)
.+||+++|++|||||||+ ++++..+. ..++++..+. +...++. ...+.+|||||++.+. .+.+.|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 579999999999999999 99987644 6666444433 3444555 5678999999999876 34566775
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCC
Q 023335 170 DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHN 249 (283)
Q Consensus 170 ~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 249 (283)
++|++++|||+++.+++ ..|..++.. ...|.++|+||+|+. .......+...+++.++++++++||++|
T Consensus 80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~vi~~SA~~g 148 (272)
T 3b1v_A 80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVL------DGQGKKINVDKLSYHLGVPVVATSALKQ 148 (272)
T ss_dssp CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHH------HHTTCCCCHHHHHHHHTSCEEECBTTTT
T ss_pred CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhC------CcCCcHHHHHHHHHHcCCCEEEEEccCC
Confidence 69999999999986543 456666655 355668999999962 1111123567788889999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 023335 250 INVNKIFKFIMAKLF 264 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~ 264 (283)
.||+++|+++.+.+.
T Consensus 149 ~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 149 TGVDQVVKKAAHTTT 163 (272)
T ss_dssp BSHHHHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999988653
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=1.2e-23 Score=183.29 Aligned_cols=155 Identities=14% Similarity=0.040 Sum_probs=117.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----------hhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----------VPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------~~~ 166 (283)
..+||+++|.+|||||||+ ++++..+. ...++++.+.....+..++. .+.+|||||+..+... ...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHH
Confidence 4689999999999999999 99998876 67777777777777777664 4678999999887632 233
Q ss_pred hc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 167 AC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 167 ~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
|+ +++|++|+|+|+++.++...+..|+. .. +.|.|+|+||+|+. ...........+++.++++++++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~------~~~~~~~~~~~l~~~lg~~~i~~ 148 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIA------EKQNIRIEIDALSARLGCPVIPL 148 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHH------HHTTEEECHHHHHHHHTSCEEEC
T ss_pred HHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccch------hhhhHHHHHHHHHHhcCCCEEEE
Confidence 33 79999999999998665544444443 33 45678999999961 11111223567788889999999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCC
Q 023335 245 SATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
||++|.|++++|+++.+.+.+.
T Consensus 149 SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 149 VSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CCGGGHHHHHHHHHHHTCCCCC
T ss_pred EcCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999998877554
No 123
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=3.4e-23 Score=191.90 Aligned_cols=247 Identities=15% Similarity=0.150 Sum_probs=148.8
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~ 77 (283)
+..++..++.++...++.+|.+.++......+.+.+++.-.+++++-...-... .+..+... .+-+..+
T Consensus 72 ~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~-----~~~~iSA 146 (436)
T 2hjg_A 72 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFG-----EPYPISG 146 (436)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----CCCSSGGGSSC-----CCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhhHHHHHHcCCC-----CeEEEeC
Confidence 455666677788888899999988776665555555544444444333111000 11111100 1111111
Q ss_pred ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335 78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA 148 (283)
Q Consensus 78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~ 148 (283)
..|.. .. ................+||+++|.+|||||||+ ++++..+. ..+++++.+.....+.+++..
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-- 224 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE-- 224 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--
T ss_pred cCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--
Confidence 22210 00 000000001112234689999999999999999 99998864 666766677767777888765
Q ss_pred EEEEeCCCC----------CCcccchh-hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 149 FSIWDVGGD----------SRSFDHVP-IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 149 l~i~Dt~G~----------~~~~~~~~-~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
+.+|||+|+ +.|..+.. .+++.+|++++|||+++..++++. .|+..+.. ...++|+|+||+|+.
T Consensus 225 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~-- 299 (436)
T 2hjg_A 225 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAV-- 299 (436)
T ss_dssp EEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred EEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCC--
Confidence 789999997 33433333 478899999999999999888875 57777664 345668999999972
Q ss_pred CCCCcccchHHH-HHHH----HHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 218 LPPDLQWTIATQ-ARAY----AKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 218 l~~~~~~~~~~~-~~~~----~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
... ....++ ..++ +...+++++++||++|.||+++|+.+.+.+.+
T Consensus 300 -~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 300 -DKD--ESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp -CCC--TTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -Ccc--hHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 211 111122 2222 22346799999999999999999999987764
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=2.9e-22 Score=176.86 Aligned_cols=162 Identities=16% Similarity=0.126 Sum_probs=113.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--------ccchhh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--------FDHVPI 166 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~ 166 (283)
.+..+|+++|.+|||||||+ ++++.++. ...+.+..+.....+..+ ...+.+|||||.... ......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 45678999999999999999 99998875 344433223322333333 467889999998873 345567
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHH-HHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC-CcEEEE
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWY-SEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK-ATLFFS 244 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~-~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~-~~~~e~ 244 (283)
+++++|++++|||+++..+.. ..|+ +.+....++.|.++|+||+|+ .. .... ..+.++++ .+ .+++++
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl---~~-~~~~-~~~~~~~~---~~~~~~~~i 152 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDA---AK-YPEE-AMKAYHEL---LPEAEPRML 152 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGG---CS-SHHH-HHHHHHHT---STTSEEEEC
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECccc---CC-chHH-HHHHHHHh---cCcCcEEEE
Confidence 889999999999999875544 3444 556655445677899999996 21 1110 22223332 23 468999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCccccc
Q 023335 245 SATHNINVNKIFKFIMAKLFNLPWTVK 271 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~ 271 (283)
||++|.|++++|+.+.+.+.+.++...
T Consensus 153 SA~~g~gv~~l~~~l~~~l~~~~~~y~ 179 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMPEGPFFYP 179 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCBCCCSSC
T ss_pred eCCCCCCHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999998877765443
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=1.9e-22 Score=175.48 Aligned_cols=157 Identities=16% Similarity=0.096 Sum_probs=122.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc------chhhhc--
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD------HVPIAC-- 168 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~-- 168 (283)
+.+||+++|++|||||||+ ++++..+. ...++++.+.....+.+++.. +.+|||||+..+.. +...|+
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4689999999999999999 99998876 677777778777777777754 78999999998776 566666
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
.++|++++|+|+++.+ ....|..++.... ..|.++|+||+|+. ...........+++.++++++++||++
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~-~~p~ilv~NK~Dl~------~~~~~~~~~~~l~~~lg~~~~~~Sa~~ 149 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEME-VKNIILVLNKFDLL------KKKGAKIDIKKMRKELGVPVIPTNAKK 149 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHTT-CCSEEEEEECHHHH------HHHTCCCCHHHHHHHHSSCEEECBGGG
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhcC-CCCEEEEEEChhcC------cccccHHHHHHHHHHcCCcEEEEEeCC
Confidence 6899999999998853 3334555554432 25668999999961 111112236778888999999999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023335 249 NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~ 267 (283)
|.|++++|+.+.+.+.+..
T Consensus 150 g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 150 GEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp TBTHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHhccc
Confidence 9999999999999876543
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.9e-22 Score=187.87 Aligned_cols=247 Identities=15% Similarity=0.155 Sum_probs=154.6
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCcc------cccccccCCCCCCCCCCccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAV------RYQKLTRRSSSESSPAPDTM 77 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~------~~~~~~~~~~~~~~p~p~~~ 77 (283)
+..++..++..++..++.+|.+.++.....-+.+.++...-+++++-...-... .+..+... .+-+..+
T Consensus 92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~-----~~~~iSA 166 (456)
T 4dcu_A 92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFG-----EPYPISG 166 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------CCSGGGSSS-----SEEECCT
T ss_pred HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhhhhHHHHHHcCCC-----ceEEeec
Confidence 455666677778888899999988887777777777765555555443111000 11111100 0001111
Q ss_pred ccccc--cc----ccccCCCCCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEE
Q 023335 78 EAGLV--EL----SRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIA 148 (283)
Q Consensus 78 ~~g~~--~~----~~~~~~~~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~ 148 (283)
..|.. .. ................+||+++|.+|||||||+ ++++.... ..+++++.+.....+.+++. .
T Consensus 167 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~ 244 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--E 244 (456)
T ss_dssp TTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--E
T ss_pred ccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--e
Confidence 11100 00 000000011122344789999999999999999 99977633 67777777777777888876 5
Q ss_pred EEEEeCCC----------CCCcccchhh-hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 149 FSIWDVGG----------DSRSFDHVPI-ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 149 l~i~Dt~G----------~~~~~~~~~~-~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
+.+|||+| ++.|..+... +++.+|++|+|+|+++..+.. ...|+..+.. .+.|.|||+||+|+.
T Consensus 245 ~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~-- 319 (456)
T 4dcu_A 245 FVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAV-- 319 (456)
T ss_dssp EEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGS--
T ss_pred EEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcC--
Confidence 78999999 6666666554 789999999999998864432 2456666654 345668999999972
Q ss_pred CCCCcccchHHHHHHHHHHc-----CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 218 LPPDLQWTIATQARAYAKAM-----KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~-----~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
. ......+++.+.++.. +++++++||++|.||+++|+.+.+.+.+
T Consensus 320 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 320 -D--KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp -C--CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred -C--CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 2 1223345555555554 5799999999999999999999987744
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.88 E-value=8.6e-23 Score=171.66 Aligned_cols=161 Identities=14% Similarity=0.033 Sum_probs=106.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCcc-c--cccccceeeeeEEEEEEC-CeEEEEEEEeCCCCC----------Ccccc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQ-E--RSLQMAGLNLINKTLMVQ-GARIAFSIWDVGGDS----------RSFDH 163 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~-~--~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~----------~~~~~ 163 (283)
..+||+|+|.+|||||||+ ++++..+ . ...+.+. .......+. .....+.+|||+|.. .+..+
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRT--QHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSC--CCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcc--cceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4689999999999999999 9999873 2 3333222 222233333 334668899999943 33455
Q ss_pred hhhhccc---CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----
Q 023335 164 VPIACKD---AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA---- 236 (283)
Q Consensus 164 ~~~~~~~---ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~---- 236 (283)
...|++. +|++++|+|+++..+.. ...|+..+.. ...|.++|+||+|+ ..........++..+....
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl---~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDK---LTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGG---SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEecccc---CChhhHHHHHHHHHHHHHhhhhc
Confidence 5566665 78899999998764422 2345555554 34567899999996 2211111122333333333
Q ss_pred ---cCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 237 ---MKATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 237 ---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
.+++++++||++|.||+++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4568999999999999999999999886543
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.87 E-value=1.1e-21 Score=182.85 Aligned_cols=154 Identities=14% Similarity=0.201 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 168 (283)
.+||+++|.+|||||||+ ++++.... ..+++++.++....+.+++. .+.+|||+|+..+.... ..++
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~--~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT--MFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE--EEEEEC--------------------CCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe--EEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 589999999999999999 99988643 66777777777778888874 58899999988765433 3478
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+.+|++++|||+++..+++.+..+...+... .+.|.|+|+||+|+. .... . ..+.+.+....+++++||++
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~----~~~~--~--~~~~l~~~~~~~~i~vSAkt 381 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRA----ANAD--A--LIRAIADGTGTEVIGISALN 381 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSC----TTTH--H--HHHHHHHHHTSCEEECBTTT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCC----Cccc--h--hHHHHHhcCCCceEEEEECC
Confidence 9999999999999998886443333322222 255668999999962 2111 1 12344444347899999999
Q ss_pred CcCHHHHHHHHHHHHh
Q 023335 249 NINVNKIFKFIMAKLF 264 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~ 264 (283)
|.||+++|++|.+.+.
T Consensus 382 g~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 382 GDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TBSHHHHHHHHTHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999999887
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=3.5e-23 Score=173.59 Aligned_cols=145 Identities=14% Similarity=0.145 Sum_probs=103.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc--
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 170 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-- 170 (283)
...+||+++|++|||||||+ ++++..+.. ..++++.++ ..+.+.+|||+|++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence 34689999999999999999 999888653 233444333 34568999999999999888888887
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhH-----CCCCceEEEeecCCCCCCCCCC-cccchHHHHHHHHHHcCCcE
Q 023335 171 --AVAILFMFDLT-SRCTLNSIVGWYSEARKW-----NQTAIPILIGTKFDDFVRLPPD-LQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 171 --ad~iilv~D~~-~~~s~~~~~~~~~~i~~~-----~~~~~~ilvgnK~DL~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 241 (283)
+|++|+|||++ ++++|..+..|+.++... ..+.|.++|+||+|+....... ......+++..++...++.+
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 889999999998888764 2355668999999973211100 00112566778888888899
Q ss_pred EEEcCCCCcC
Q 023335 242 FFSSATHNIN 251 (283)
Q Consensus 242 ~e~Sa~~~~~ 251 (283)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999998875
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=5.2e-22 Score=182.41 Aligned_cols=156 Identities=15% Similarity=0.079 Sum_probs=114.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch-------hhh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV-------PIA 167 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-------~~~ 167 (283)
...+||+|+|..|+|||||+ ++++..+. ...++++.+...+.+.+.+.. .+.+|||+|++.+..+. ..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHH
Confidence 44789999999999999999 99998874 555555666666777776642 68899999999876653 447
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
++++|++|+|||++..+ ....|+..+... +.|+|+|+||+|+. .... .+..+++++.++++++++||+
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~--~~piIvV~NK~Dl~----~~~~---~~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM--EIPFVVVVNKIDVL----GEKA---EELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT--TCCEEEECCCCTTT----TCCC---THHHHHSSCCTTCCCCCCSSC
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc--CCCEEEEEeCcCCC----CccH---HHHHHHHHHHcCCCEEEEECC
Confidence 89999999999994333 335677777665 45678999999972 2211 155667777889999999999
Q ss_pred CCcCHHHHHHHHHHHHhCC
Q 023335 248 HNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~~ 266 (283)
+|.|++++|++|.+.+.+.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999998544
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.85 E-value=7.9e-21 Score=176.11 Aligned_cols=150 Identities=19% Similarity=0.250 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc---------ccchhhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS---------FDHVPIAC 168 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~ 168 (283)
.+|+++|.+|||||||+ ++++.... ...++++.+.....+.+++.. +.+|||+|.+.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 37999999999999999 99988754 666666667777788888765 688999998753 23456688
Q ss_pred ccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHH-HHHHHHcCC-cEEEE
Q 023335 169 KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQA-RAYAKAMKA-TLFFS 244 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~-~~~~~~~~~-~~~e~ 244 (283)
++||++|+|||+++..+..+ +..|+.. .+.|.+||+||+|+ . .. ...+. .++. .+++ .++++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~-----~~~p~ilv~NK~D~----~--~~--~~~~~~~~~~-~lg~~~~~~i 145 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRK-----STVDTILVANKAEN----L--RE--FEREVKPELY-SLGFGEPIPV 145 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHH-----HTCCEEEEEESCCS----H--HH--HHHHTHHHHG-GGSSCSCEEC
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEeCCCC----c--cc--cHHHHHHHHH-hcCCCCEEEE
Confidence 99999999999988665543 3344433 14577899999995 1 11 12223 4444 4576 78999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCC
Q 023335 245 SATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
||++|.|++++|+++.+.+.+.
T Consensus 146 SA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 146 SAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHT
T ss_pred eccCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999988643
No 132
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.85 E-value=1.5e-20 Score=172.32 Aligned_cols=203 Identities=13% Similarity=0.081 Sum_probs=145.8
Q ss_pred hhhhhhcccCCCCcccccccccCCCCCCCCCCccccccccccccccCCCCCCCCCcee----eEEEEEcCCCCcHHHhH-
Q 023335 43 WERILVCSIGKQPAVRYQKLTRRSSSESSPAPDTMEAGLVELSRTFSSGYDTDSDLVS----LKISLLGDCQIGKTSFV- 117 (283)
Q Consensus 43 ~~~~~~~s~g~~~~~~~~~~~~~~~~~~~p~p~~~~~g~~~~~~~~~~~~~~~~~~~~----~KI~vlG~~~vGKSSLi- 117 (283)
.++++++.||.+|.++.++.+++... |+.+..|.++. ...-..+ -.|+|+|.+|||||||+
T Consensus 110 ~~~~~~~~GG~gG~Gn~~f~~~~~~~-----p~~~~~g~~g~---------~~~i~lelk~g~~VgLVG~~gAGKSTLL~ 175 (416)
T 1udx_A 110 GQTVLVARGGAGGRGNMHFVSPTRQA-----PRFAEAGEEGE---------KRRLRLELMLIADVGLVGYPNAGKSSLLA 175 (416)
T ss_dssp TCEEEEECCCCCCCCGGGGCCSSCSS-----CCEEECCCCCC---------EEEEEEEECCSCSEEEECCGGGCHHHHHH
T ss_pred CceEEEecCCCCCcccceeecccccC-----cccccCCCCce---------EeeeeeEEcCCCEEEEECCCCCcHHHHHH
Confidence 57889999999999998887766653 56666664431 1111112 35789999999999999
Q ss_pred hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----cccchhhhc---ccCcEEEEEEECCChhhHHHH
Q 023335 118 KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----SFDHVPIAC---KDAVAILFMFDLTSRCTLNSI 189 (283)
Q Consensus 118 ~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~~---~~ad~iilv~D~~~~~s~~~~ 189 (283)
.+++.... ..++.+........+.+++ ...+.+||++|... +..+...++ ..++.+++++|++ .+++.++
T Consensus 176 ~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~l 253 (416)
T 1udx_A 176 AMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTL 253 (416)
T ss_dssp HHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHH
T ss_pred HHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHH
Confidence 88877654 4555333333344555554 24578999999743 233333333 4799999999998 7788888
Q ss_pred HHHHHHHHhHCC---CCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 190 VGWYSEARKWNQ---TAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 190 ~~~~~~i~~~~~---~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
..|..++..+.. ..|.|||+||+|+ .. . ...+++.+.++..+++++++||++++|+++++++|.+.+.+.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVlNKlDl----~~--~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVALNKVDL----LE--E-EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEEECCTT----SC--H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhHHhhcCCEEEEEECCCh----hh--H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 888888877643 4677899999996 21 1 234555566666788999999999999999999999999876
Q ss_pred cc
Q 023335 267 PW 268 (283)
Q Consensus 267 ~~ 268 (283)
++
T Consensus 327 ~~ 328 (416)
T 1udx_A 327 PP 328 (416)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=4.4e-20 Score=166.67 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=118.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCccc---------chhhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD---------HVPIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~ 167 (283)
..++|+++|.+|||||||+ ++++..+. ..++.+..+.....+..++ ..+.+|||+|...+.. ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4579999999999999999 99988765 4444333333333444443 5688999999865321 11124
Q ss_pred cccCcEEEEEEECCChh--hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 168 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
...+|++++|+|+++.. +++....|+.++.....+.|.|+|+||+|+ ... . ..+++.++++..+++++++|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl----~~~--~-~~~~~~~~~~~~~~~~~~iS 316 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV----ADE--E-NIKRLEKFVKEKGLNPIKIS 316 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT----CCH--H-HHHHHHHHHHHTTCCCEECB
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc----CCh--H-HHHHHHHHHHhcCCCeEEEe
Confidence 45799999999999887 788888999999887656677899999996 211 1 12456667778889999999
Q ss_pred CCCCcCHHHHHHHHHHHHhC
Q 023335 246 ATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 246 a~~~~~v~~lf~~l~~~i~~ 265 (283)
|++|+||+++|++|.+.+..
T Consensus 317 A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998854
No 134
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.84 E-value=1.1e-20 Score=176.38 Aligned_cols=151 Identities=15% Similarity=0.229 Sum_probs=116.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCC-Cccc--------chhhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS-RSFD--------HVPIA 167 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-~~~~--------~~~~~ 167 (283)
.+||+++|.+|||||||+ ++++.++. ..+++++.++....+.+++. .+.+|||+|.. .+.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 389999999999999999 99988643 77777777887788888875 47899999988 6543 23457
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
++.+|++|+|||+++..++++.. +++.+ .+.|.|+|+||+||. +. ...+++.+++. .+++++++||+
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~----~~---~~~~~~~~~~~-~~~~~i~iSAk 387 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVV----EK---INEEEIKNKLG-TDRHMVKISAL 387 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSC----CC---CCHHHHHHHHT-CSTTEEEEEGG
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccc----cc---cCHHHHHHHhc-CCCcEEEEECC
Confidence 89999999999999998887643 33333 356778999999972 11 12344444432 45789999999
Q ss_pred CCcCHHHHHHHHHHHHhC
Q 023335 248 HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~ 265 (283)
+|.|++++|++|.+.+..
T Consensus 388 tg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GTCCHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999997663
No 135
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.83 E-value=7.2e-20 Score=167.87 Aligned_cols=164 Identities=14% Similarity=0.127 Sum_probs=115.0
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccc--cc--ccee------------eeeEEEEEE---CCeEEEEEEEeCCCC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERS--LQ--MAGL------------NLINKTLMV---QGARIAFSIWDVGGD 157 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~--~~--t~~~------------~~~~~~~~~---~~~~~~l~i~Dt~G~ 157 (283)
...+||+++|.+++|||||+ ++++...... +. +.+. +........ ......+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45789999999999999999 9987433211 00 1000 000000000 123368999999999
Q ss_pred CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc
Q 023335 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM 237 (283)
Q Consensus 158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~ 237 (283)
+.|......++..+|++|+|+|+++..++.....|+..+..... .+.|+|+||+|+ .+.+......+++.++.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~-~~iivviNK~Dl---~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV-KNLIIVQNKVDV---VSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC-CCEEEEEECGGG---SCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC-CCEEEEEECccc---cchHHHHHHHHHHHHHHHhh
Confidence 99998888899999999999999998777788888877766542 456899999997 22111112234444444333
Q ss_pred ---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 238 ---KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 238 ---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
+++++++||++|+|++++|+.|.+.+..
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 5689999999999999999999987754
No 136
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.82 E-value=6.6e-20 Score=161.79 Aligned_cols=164 Identities=15% Similarity=0.093 Sum_probs=115.2
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCC---------Ccccchh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS---------RSFDHVP 165 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~ 165 (283)
.+..+|+++|.+|||||||+ ++++..+. ...+.+..+.....+..++ ..+.+|||+|.+ .+.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~--~~i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC--eeEEEEECcCCCccchhhHHHHHHHHHH
Confidence 35678999999999999999 99988765 3333222222223333343 568899999987 3445566
Q ss_pred hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEE
Q 023335 166 IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFS 244 (283)
Q Consensus 166 ~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~ 244 (283)
.+++.+|++++|+|.++ +.....|+-+... ..+.|.|+|+||+|+ .. ......+.+.++++.+++ .++++
T Consensus 84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~----~~-~~~~~~~~l~~l~~~~~~~~~i~i 154 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDN----VQ-EKADLLPHLQFLASQMNFLDIVPI 154 (301)
T ss_dssp SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTT----CC-CHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECccc----Cc-cHHHHHHHHHHHHHhcCcCceEEE
Confidence 78899999999999977 3333334433222 235667899999996 11 122345666777777776 68999
Q ss_pred cCCCCcCHHHHHHHHHHHHhCCcccccc
Q 023335 245 SATHNINVNKIFKFIMAKLFNLPWTVKR 272 (283)
Q Consensus 245 Sa~~~~~v~~lf~~l~~~i~~~~~~~~~ 272 (283)
||++|.|++++++.+.+.+.+.++....
T Consensus 155 SA~~g~~v~~l~~~i~~~l~~~~~~~~~ 182 (301)
T 1ega_A 155 SAETGLNVDTIAAIVRKHLPEATHHFPE 182 (301)
T ss_dssp CTTTTTTHHHHHHHHHTTCCBCCCSSCT
T ss_pred ECCCCCCHHHHHHHHHHhCCcCCCCCCc
Confidence 9999999999999999988777665443
No 137
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.82 E-value=5.8e-20 Score=171.98 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=111.7
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hhhcCc----c---c-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhh
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KYVGNE----Q---E-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI 166 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~~~~~----~---~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 166 (283)
..+..++|+++|..++|||||+ ++++.. . . +..+.+..+.....+.+++ ..+.+|||||++.|......
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence 3456899999999999999999 998776 2 2 2222222333333445555 56889999999998888888
Q ss_pred hcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc----CC
Q 023335 167 ACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM----KA 239 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~----~~ 239 (283)
++..+|++|+|+|+++ .++++.+. .+... ..|.|+|+||+|+ .+.+......+++.++++.. ++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~~--~ip~IvviNK~Dl---~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDHF--NIPIIVVITKSDN---AGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHHT--TCCBCEEEECTTS---SCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred HHhhCCEEEEEEecCCCccHHHHHHHH----HHHHc--CCCEEEEEECCCc---ccchhHHHHHHHHHHHHhhhcccccc
Confidence 8999999999999988 44444432 23222 3455899999997 22222233456677777766 57
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 240 TLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+++++||++|+|+++++++|.+.+.
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhc
Confidence 8999999999999999999999774
No 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=3.4e-20 Score=166.73 Aligned_cols=121 Identities=20% Similarity=0.241 Sum_probs=96.6
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D 213 (283)
.+.+++|||+|++.++.++..|+++++++|+|||+++ .+++++...|++.+... ..+.|+||+|||+|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D 271 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD 271 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence 4779999999999999999999999999999999999 56788888999988764 24566689999999
Q ss_pred CCCC----------CCCCcccchHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 214 DFVR----------LPPDLQWTIATQARAYAK-----------AMKATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 214 L~~~----------l~~~~~~~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
|... +++-...+..+++.+++. ..++.+++|||+++.||+++|+++.+.+.+.
T Consensus 272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 7210 000001234677888876 3567789999999999999999999988653
No 139
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=1.8e-19 Score=166.92 Aligned_cols=250 Identities=11% Similarity=0.123 Sum_probs=144.0
Q ss_pred hHHHHhhhhhHhhhhhheeeccccccchhHHHHHHHHHhhhhhhhcccCCCCccc------ccccccCCCCCCCCCCccc
Q 023335 4 IIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFFRFIWERILVCSIGKQPAVR------YQKLTRRSSSESSPAPDTM 77 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~~~~~------~~~~~~~~~~~~~p~p~~~ 77 (283)
+..++..++..++..++.+|.+.++......+.+.++..--+++++-...-.... +........ .+-+..+
T Consensus 71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~---~~~~iSA 147 (439)
T 1mky_A 71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFG---EPIPVSA 147 (439)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSC---SCEECBT
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHhcCCC---CEEEEec
Confidence 5566777788888889999999887766666666666544444443331111000 000000000 0111112
Q ss_pred ccccc--cc-------ccccCCC-CCCCCCceeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECC
Q 023335 78 EAGLV--EL-------SRTFSSG-YDTDSDLVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQG 144 (283)
Q Consensus 78 ~~g~~--~~-------~~~~~~~-~~~~~~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~ 144 (283)
..|.. .. ....... .+.......+||+++|++|||||||+ ++++..+. ..+++++.+.....+.++|
T Consensus 148 ~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 148 EHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp TTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred cCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 22210 00 0000000 01001234689999999999999999 99988763 6666666666677888888
Q ss_pred eEEEEEEEeCCCCCCcccc-----------h-hhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecC
Q 023335 145 ARIAFSIWDVGGDSRSFDH-----------V-PIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKF 212 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~-----------~-~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~ 212 (283)
.. +.+|||+|..++... . ..+++.+|++++|+|+++..+.++. .+...+.. ...+.++|+||+
T Consensus 228 ~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~ 302 (439)
T 1mky_A 228 RK--YVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKW 302 (439)
T ss_dssp EE--EEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECG
T ss_pred EE--EEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECc
Confidence 64 678999998543221 1 2467889999999999987776653 23333332 245668999999
Q ss_pred CCCCCCCCCcccchHHHH----HHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 213 DDFVRLPPDLQWTIATQA----RAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 213 DL~~~l~~~~~~~~~~~~----~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
|+ ... ......+.. +.++...+++++++||++|.||+++|+.+.+.+.+
T Consensus 303 Dl---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 303 DL---VVH-REKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp GG---STT-GGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cC---CCc-hhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 97 221 111111112 22222335789999999999999999999887644
No 140
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.81 E-value=1e-20 Score=175.17 Aligned_cols=154 Identities=15% Similarity=0.193 Sum_probs=98.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCC--------Ccccchhhhccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDS--------RSFDHVPIACKD 170 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~--------~~~~~~~~~~~~ 170 (283)
..+|+++|.+|||||||+ ++++..+....++.|.+.......+......+.+|||+|++ .+......++++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 368999999999999999 99988765222333433322233333333568899999986 455666778999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCCCC
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSATHN 249 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~~~ 249 (283)
+|++|+|+|+++..++.+ .|+..+.. ..+.|++||+||+|+... . .+..++. ..++ .++++||++|
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~----~-----~~~~~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEM----R-----ANIYDFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC--------------CCCSSG-GGSSCCCEECBTTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccc----h-----hhHHHHH-HcCCCCeEEEeCcCC
Confidence 999999999998777654 23333222 235677899999996211 0 1111222 3455 7899999999
Q ss_pred cCHHHHHHHHHHHHhCC
Q 023335 250 INVNKIFKFIMAKLFNL 266 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~~ 266 (283)
.|++++|+++.+.+.+.
T Consensus 150 ~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp BTHHHHHHHHHHTGGGC
T ss_pred CChHHHHHHHHHhcCcc
Confidence 99999999999988643
No 141
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.81 E-value=1.4e-19 Score=156.12 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=108.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCc-cc-ccccc-ceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch---------
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNE-QE-RSLQM-AGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------- 164 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~-~~-~~~~t-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------- 164 (283)
...+||+|+|.+|||||||+ ++++.. +. ...++ ++.+.....+..++. .+.||||||...+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR--EIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE--EEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC--EEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34689999999999999999 999887 44 33333 444555556666664 57889999987654322
Q ss_pred --hhhcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEee-cCCCCCCCCCCcccchH-------HHHHHH
Q 023335 165 --PIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGT-KFDDFVRLPPDLQWTIA-------TQARAY 233 (283)
Q Consensus 165 --~~~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgn-K~DL~~~l~~~~~~~~~-------~~~~~~ 233 (283)
..+++.+|++|+|||+++.... ..+..|+.++.......|+|+|.| |+|+. .. .... ++++.+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~----~~--~~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLN----GG--SLMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT----TC--CHHHHHHHCCCHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccC----Cc--cHHHHHHhcchHHHHHH
Confidence 2267899999999999863222 223344444322222346665555 99972 11 1111 345556
Q ss_pred HHHcCCcE-----EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 234 AKAMKATL-----FFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 234 ~~~~~~~~-----~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
++..+..+ +++||++|.|++++|+.|.+.+...+
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 77666433 67999999999999999999887754
No 142
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.81 E-value=4.5e-20 Score=171.50 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=105.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccch--------hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHV--------PIAC 168 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~ 168 (283)
.+||+++|.+|||||||+ ++++..+. ..+++++.++....+.+++.. +.+|||+|...+.... ..++
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhhh
Confidence 589999999999999999 99987654 566767677766677788754 6889999986654332 3367
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSATH 248 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 248 (283)
+.+|++++|||+++..+... ..|++.+. ..|.|+|+||+|+. + ..... ...++. .+.+++++||++
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l~----~~piivV~NK~Dl~---~-~~~~~---~~~~~~--~~~~~i~iSAkt 367 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQVK----HRPLILVMNKIDLV---E-KQLIT---SLEYPE--NITQIVHTAAAQ 367 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHHT----TSCEEEEEECTTSS---C-GGGST---TCCCCT--TCCCEEEEBTTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhcc----CCcEEEEEECCCCC---c-chhhH---HHHHhc--cCCcEEEEECCC
Confidence 89999999999999877655 45666553 35678999999972 1 11110 111111 356899999999
Q ss_pred CcCHHHHHHHHHHHHhCCc
Q 023335 249 NINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 249 ~~~v~~lf~~l~~~i~~~~ 267 (283)
|.|++++|++|.+.+....
T Consensus 368 g~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 368 KQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp TBSHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHHhccC
Confidence 9999999999999887654
No 143
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.80 E-value=8.6e-19 Score=160.94 Aligned_cols=159 Identities=15% Similarity=0.119 Sum_probs=104.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc---cc-cccc--cceeeeeEEEEEE-------------C--C----eEEEEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFSIW 152 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i~ 152 (283)
..++|+++|..++|||||+ ++.+.. +. +..+ |....+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 4689999999999999999 998543 22 2223 4444444333321 1 1 23789999
Q ss_pred eCCCCCCcccchhhhcccCcEEEEEEECCC----hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHH
Q 023335 153 DVGGDSRSFDHVPIACKDAVAILFMFDLTS----RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIAT 228 (283)
Q Consensus 153 Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~ 228 (283)
||||++.|.......+..+|++|+|+|+++ .++++.+..| .. ....++|+|+||+|+. .........+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~-l~~~~iivv~NK~Dl~---~~~~~~~~~~ 158 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EI-LGIDKIIIVQNKIDLV---DEKQAEENYE 158 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HH-TTCCCEEEEEECTTSS---CTTTTTTHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HH-cCCCeEEEEEEccCCC---CHHHHHHHHH
Confidence 999999987777777788999999999995 3455544332 22 2233567999999972 2222223456
Q ss_pred HHHHHHHHc---CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 229 QARAYAKAM---KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 229 ~~~~~~~~~---~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
++.++++.. +++++++||++|+|+++++++|.+.+..
T Consensus 159 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 159 QIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 777777653 6789999999999999999999987654
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.80 E-value=4.9e-19 Score=159.95 Aligned_cols=161 Identities=16% Similarity=0.165 Sum_probs=110.6
Q ss_pred eeE-EEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC---------cccchhhh
Q 023335 100 SLK-ISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR---------SFDHVPIA 167 (283)
Q Consensus 100 ~~K-I~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~ 167 (283)
.++ |+++|.+|||||||+ ++++..+. ..++.++.+.....+.+++. .+.+|||+|.-. |.... ..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl-~~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTL-SE 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHH-HG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHH-HH
Confidence 355 999999999999999 99988765 45555555666778888884 568899999622 22222 24
Q ss_pred cccCcEEEEEEECCChh--hHHHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc---CCcE
Q 023335 168 CKDAVAILFMFDLTSRC--TLNSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM---KATL 241 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~--s~~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~---~~~~ 241 (283)
+..+|++++|+|++++. +.+.+..|.+.+.... .+.|.|+|+||+|+ ++.. .....+.+..+++.+ +.++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl---~~~~-~~~~~~~~~~l~~~l~~~~~~~ 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK---INGD-LYKKLDLVEKLSKELYSPIFDV 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG---CCSC-HHHHHHHHHHHHHHHCSCEEEE
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC---CCch-HHHHHHHHHHHHHHhcCCCCcE
Confidence 78999999999999887 6666767777666654 34566899999996 3221 111123444455555 2367
Q ss_pred EEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 242 FFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 242 ~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
+++||+++.|++++++.|.+.+....
T Consensus 331 ~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 331 IPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHHHhcccC
Confidence 88999999999999999998776544
No 145
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.80 E-value=6.6e-20 Score=159.62 Aligned_cols=159 Identities=13% Similarity=0.137 Sum_probs=96.3
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCC-------cc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSR-------SF 161 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~ 161 (283)
..+||+|+|.+|+|||||+ ++++.... .. .+|++.+.....+..++..+.+.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3799999999999999999 87665543 33 45667777666666667778999999999743 22
Q ss_pred cch-------hhhcc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 162 DHV-------PIACK-------------DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 162 ~~~-------~~~~~-------------~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
.+. ..|+. ++|+++++++.++......-..+++.+.. ..|.|+|+||+|+ +...
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~---~~~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADT---LTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGG---SCHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCC---CCHH
Confidence 222 33333 37799999977653222222345555544 5667899999996 3322
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 222 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
......+.+.+.....+++++++||++++|+++++++|.+.+
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 222224556666777899999999999999999999998765
No 146
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.79 E-value=7e-20 Score=162.55 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=94.5
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecCC
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKFD 213 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~D 213 (283)
.+.+++|||+||+.++.++..||++++++|+|||++ +.+++++...|++.+... ..+.|+||+|||+|
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~D 245 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 245 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHH
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECch
Confidence 478999999999999999999999999999999665 667788888888887654 24566689999999
Q ss_pred CCCC----------CCCCcc-cchHHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 214 DFVR----------LPPDLQ-WTIATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 214 L~~~----------l~~~~~-~~~~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
|... +++-.. ....+++.+++. ..++.+++|||+++.||+++|..+.+.+++..
T Consensus 246 L~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 246 LLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence 7321 011000 234677777743 44566788999999999999999999998654
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=9e-19 Score=149.21 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=106.9
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc--cceeeeeEEEEEECCeEEEEEEEeCCCCCC-----------cc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ--MAGLNLINKTLMVQGARIAFSIWDVGGDSR-----------SF 161 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 161 (283)
....+||+|+|.+|||||||+ ++++..+. ...+ +++.+.....+.+++. .+.+|||||... +.
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHH
Confidence 345799999999999999999 99998876 4444 4455555566667764 578899999542 33
Q ss_pred cchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH---CCCCceEEEeecCCCCCCCCCCccc-ch---HHHHHHHH
Q 023335 162 DHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---NQTAIPILIGTKFDDFVRLPPDLQW-TI---ATQARAYA 234 (283)
Q Consensus 162 ~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~---~~~~~~ilvgnK~DL~~~l~~~~~~-~~---~~~~~~~~ 234 (283)
.....+++++|++|+|+|+++.... ...|+..+... ....|.+||+||+|+. ...... .. .+.+++++
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~---~~~~~~~~i~~~~~~l~~l~ 178 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDL---GDTNLHDYLREAPEDIQDLM 178 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccC---CcccHHHHHHhchHHHHHHH
Confidence 3344456788999999999765441 12333333321 1234678999999972 221111 11 24678888
Q ss_pred HHcCCcEEEEcCCCC-----cCHHHHHHHHHHHHhCC
Q 023335 235 KAMKATLFFSSATHN-----INVNKIFKFIMAKLFNL 266 (283)
Q Consensus 235 ~~~~~~~~e~Sa~~~-----~~v~~lf~~l~~~i~~~ 266 (283)
+..+..|+.+++..+ .++.++|+.+.+.+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 179 DIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 899988888877644 68999999988877543
No 148
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-19 Score=148.52 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=84.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcccc----ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhccc--
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQER----SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKD-- 170 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~-- 170 (283)
...+||+++|++|||||||+ ++++..+.. ..++++.++ ..+.+.+|||+|++.+...+..++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 34689999999999999999 999887653 222332222 34568899999999998888888876
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhHC-----CCCceEEEeecCCC
Q 023335 171 --AVAILFMFDLT-SRCTLNSIVGWYSEARKWN-----QTAIPILIGTKFDD 214 (283)
Q Consensus 171 --ad~iilv~D~~-~~~s~~~~~~~~~~i~~~~-----~~~~~ilvgnK~DL 214 (283)
+|++|+|||++ +.+++..+..|+..+.... .+.|.++|+||+|+
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 168 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 168 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence 89999999999 8999999998888876542 35566899999997
No 149
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.79 E-value=9.2e-19 Score=167.09 Aligned_cols=157 Identities=11% Similarity=0.136 Sum_probs=111.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc--cc---------ccc---ccceeeeeEEEEEE-----CCeEEEEEEEeCCCCCC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSL---QMAGLNLINKTLMV-----QGARIAFSIWDVGGDSR 159 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~---~t~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~ 159 (283)
..+|+|+|..++|||||+ +++... .. ... .+.|.++....+.+ ++..+.+++|||||++.
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 468999999999999999 997632 11 111 12344443333332 56678999999999999
Q ss_pred cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335 160 SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 239 (283)
Q Consensus 160 ~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (283)
|......+++.+|++|+|+|+++..+++....|+..... +.|+|+|+||+|+. ... ..+...++.+.+++
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~----~a~---~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLP----AAD---PERVAEEIEDIVGI 153 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcc----ccc---HHHHHHHHHHHhCC
Confidence 999999999999999999999998888888888776543 45668999999962 221 23445566666776
Q ss_pred ---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 240 ---TLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 240 ---~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
.++++||++|.||+++|+++.+.+...
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 489999999999999999999887543
No 150
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.79 E-value=4.6e-20 Score=166.71 Aligned_cols=161 Identities=9% Similarity=0.119 Sum_probs=94.4
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC-cccccc---------ccceeeeeEEEEEECCeEEEEEEEeCCCC-------CCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN-EQERSL---------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~-~~~~~~---------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~ 160 (283)
..++|+|+|++|+|||||+ ++.+. .+...+ +|.+.++....+..++..+.+.+|||+|. +.+
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4689999999999999999 86554 343221 35555555455555677789999999998 777
Q ss_pred ccchh-------hhcccCcEE-----------EEEEECCC-hhhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 161 FDHVP-------IACKDAVAI-----------LFMFDLTS-RCTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 161 ~~~~~-------~~~~~ad~i-----------ilv~D~~~-~~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
..+.. .|++.++++ +++|++++ ..++..+. .|+..+ ....|+|+|+||+|+ +..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl---~~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADT---LTL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSS---SCH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCC---CCH
Confidence 77776 677665544 47777776 56666665 455544 345667899999996 221
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
.......+++.++++.+++++|++||+++.| ++.|.++.+.+.+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 1111112577888888899999999999999 88888888877654
No 151
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.78 E-value=3.6e-19 Score=158.54 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=93.0
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKF 212 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~ 212 (283)
..+.+++|||+|++.++.++..||++++++|+|||++ +.+++++...|+..+... ..+.|+||+|||+
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence 3477999999999999999999999999999999999 778899988888888764 2455668999999
Q ss_pred CCCCC----------CCCCcccchHHHHHHHHHH-c--------------------------CCcEEEEcCCCCcCHHHH
Q 023335 213 DDFVR----------LPPDLQWTIATQARAYAKA-M--------------------------KATLFFSSATHNINVNKI 255 (283)
Q Consensus 213 DL~~~----------l~~~~~~~~~~~~~~~~~~-~--------------------------~~~~~e~Sa~~~~~v~~l 255 (283)
||... +++-......+++.+++.. + ++.+++|||++..||+.+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v 318 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV 318 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence 97310 1111111124455444432 2 356788999999999999
Q ss_pred HHHHHHHHhC
Q 023335 256 FKFIMAKLFN 265 (283)
Q Consensus 256 f~~l~~~i~~ 265 (283)
|+.+.+.+++
T Consensus 319 F~~v~~~Il~ 328 (340)
T 4fid_A 319 FMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 152
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.78 E-value=2.4e-18 Score=158.13 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=110.1
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc---cc-cccc--cceeeeeEEEEEE-------------C--C----eEEEEE
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE---QE-RSLQ--MAGLNLINKTLMV-------------Q--G----ARIAFS 150 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~---~~-~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~ 150 (283)
....++|+++|..++|||||+ ++++.. +. +..+ |....+....+.. + + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 345799999999999999999 998542 22 2223 4444443333321 1 1 137899
Q ss_pred EEeCCCCCCcccchhhhcccCcEEEEEEECCCh----hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 151 IWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR----CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 151 i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~----~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+|||||++.|.......+..+|++|+|+|+++. ++++.+..| .... ..+.|+|+||+|+ .........
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~~-~~~iivviNK~Dl---~~~~~~~~~ 158 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QIIG-QKNIIIAQNKIEL---VDKEKALEN 158 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHHT-CCCEEEEEECGGG---SCHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHcC-CCcEEEEEECccC---CCHHHHHHH
Confidence 999999998877777777889999999999853 445444332 2222 2345789999996 221111123
Q ss_pred HHHHHHHHHH---cCCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 227 ATQARAYAKA---MKATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 227 ~~~~~~~~~~---~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.+++.++++. .+++++++||++|+|+++++++|.+.+..
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 4556666654 36789999999999999999999987654
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.78 E-value=1.4e-20 Score=177.26 Aligned_cols=160 Identities=12% Similarity=0.059 Sum_probs=113.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
+..+|+++|.+++|||||+ ++.+..+. ...++++.++....+.+++ ...+.||||||++.|..+...+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3578999999999999999 99988877 5555555555444444422 2357899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHH---HHHc--CCcEEEEcCCCCcC
Q 023335 177 MFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAY---AKAM--KATLFFSSATHNIN 251 (283)
Q Consensus 177 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~---~~~~--~~~~~e~Sa~~~~~ 251 (283)
|||+++....+....| ..+.. .+.|+|+|+||+|+... ......++...+ +..+ .++++++||++|.|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~----~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~G 154 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEA----DPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGEN 154 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTT----SCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCS
T ss_pred EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEeccccccc----chHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCC
Confidence 9999987665554333 33332 24566899999997321 111112222221 1222 24788999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 023335 252 VNKIFKFIMAKLFNL 266 (283)
Q Consensus 252 v~~lf~~l~~~i~~~ 266 (283)
++++|+++...+...
T Consensus 155 I~eLle~I~~l~~~~ 169 (537)
T 3izy_P 155 MMALAEATIALAEML 169 (537)
T ss_dssp SHHHHHHHHHHHTTC
T ss_pred chhHHHHHHHhhhcc
Confidence 999999999877533
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.78 E-value=2.4e-19 Score=168.01 Aligned_cols=156 Identities=15% Similarity=0.090 Sum_probs=98.5
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--c----------------------------ccccceeeeeEEEEEECCeE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--R----------------------------SLQMAGLNLINKTLMVQGAR 146 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~----------------------------~~~t~~~~~~~~~~~~~~~~ 146 (283)
...+||+++|.+++|||||+ ++++.... . .....|.++......++...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 34799999999999999999 99765111 0 00011333333344444455
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHH-----HHHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSI-----VGWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~-----~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
..+.||||||+++|......+++.+|++|+|||+++.+++..+ ..+...+.......++|||+||+|+... ...
T Consensus 111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~-~~~ 189 (483)
T 3p26_A 111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW-SQQ 189 (483)
T ss_dssp CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTT-CHH
T ss_pred ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccc-hHH
Confidence 7789999999999999999999999999999999987654332 1111122222223456899999997210 001
Q ss_pred cccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHH
Q 023335 222 LQWTIATQARAYAKAMK-----ATLFFSSATHNINVNK 254 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~ 254 (283)
......+++..+.+..+ ++++++||++|+|+++
T Consensus 190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 11122444555555544 5789999999999975
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.78 E-value=3.9e-20 Score=171.22 Aligned_cols=156 Identities=13% Similarity=0.127 Sum_probs=106.2
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC--ccccc------------------------------cccceeeeeEEEEEECCe
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQERS------------------------------LQMAGLNLINKTLMVQGA 145 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~--~~~~~------------------------------~~t~~~~~~~~~~~~~~~ 145 (283)
..+||+++|..++|||||+ +++.. .+... ...+..+.. ...++..
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~~ 82 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFETK 82 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEECS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEecC
Confidence 4689999999999999999 99864 22210 111122222 2223334
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH------CCCCceEEEeecCCCCCCC-
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW------NQTAIPILIGTKFDDFVRL- 218 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~------~~~~~~ilvgnK~DL~~~l- 218 (283)
...+.+|||||+++|......+++.+|++|+|||+++ .+|+++..|..+.+.+ ....+.|+|+||+|+....
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 4678999999999998888889999999999999998 7888765554443332 1223457999999972110
Q ss_pred CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHHH
Q 023335 219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKIFK 257 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf~ 257 (283)
.++......++++++++.++ ++++++||++|+|+.++++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 00111234677888888876 6799999999999986554
No 156
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=2e-18 Score=159.87 Aligned_cols=156 Identities=10% Similarity=0.055 Sum_probs=103.4
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--------------------------------cccccceeeeeEEEEEECC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQG 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~~ 144 (283)
...++|+++|.+++|||||+ +++...-. +..+.++.+.....+..+
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~- 93 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE- 93 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC-
Confidence 34789999999999999999 99543110 011223344433344444
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhh---HH---HHHHHHHHHHhHCCCCc-eEEEeecCCCCCC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCT---LN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR 217 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s---~~---~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~ 217 (283)
...+.||||||+++|......+++.+|++|+|+|+++... |+ .....+..+.. ...+ .|+|+||+|+...
T Consensus 94 -~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 -KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred -CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 4578999999999998888889999999999999988532 22 11222222222 2345 5799999996210
Q ss_pred -CCCCcccchHHHHHHHHHHcCC------cEEEEcCCCCcCHHHHHH
Q 023335 218 -LPPDLQWTIATQARAYAKAMKA------TLFFSSATHNINVNKIFK 257 (283)
Q Consensus 218 -l~~~~~~~~~~~~~~~~~~~~~------~~~e~Sa~~~~~v~~lf~ 257 (283)
..........+++..+++.+++ +++++||++|.|++++++
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 0011122335666677766654 689999999999999765
No 157
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.77 E-value=2.4e-18 Score=164.03 Aligned_cols=158 Identities=12% Similarity=0.201 Sum_probs=113.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc--cc---------cccc---cceeeeeE--EEEEE---CCeEEEEEEEeCCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QE---------RSLQ---MAGLNLIN--KTLMV---QGARIAFSIWDVGGDS 158 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~---------~~~~---t~~~~~~~--~~~~~---~~~~~~l~i~Dt~G~~ 158 (283)
...+|+++|..++|||||+ +++... +. +..+ ..|.++.. ..+.+ ++..+.+++|||||++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 3579999999999999999 997531 11 0000 12222221 12222 5667899999999999
Q ss_pred CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC
Q 023335 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK 238 (283)
Q Consensus 159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~ 238 (283)
.|......+++.+|++|+|+|+++..+++....|+..... +.|+|+|+||+|+. ... ..+...++.+.++
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~ipiIvviNKiDl~----~a~---~~~v~~el~~~lg 154 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ---DLVIIPVINKIDLP----SAD---VDRVKKQIEEVLG 154 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---TCEEEEEEECTTST----TCC---HHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC---CCCEEEEEeccCcc----ccC---HHHHHHHHHHhhC
Confidence 9988888899999999999999999888888888776542 45668999999962 221 2344556666667
Q ss_pred C---cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 239 A---TLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 239 ~---~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
+ .++++||++|.||+++|+++++.+...
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 6 489999999999999999999987643
No 158
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.77 E-value=3.1e-18 Score=146.90 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=103.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-ccccc--ceeeeeEEEEEECCeEEEEEEEeCCCC--------CCcccchhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQM--AGLNLINKTLMVQGARIAFSIWDVGGD--------SRSFDHVPI 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t--~~~~~~~~~~~~~~~~~~l~i~Dt~G~--------~~~~~~~~~ 166 (283)
..+||+|+|.+|||||||+ ++++..+. ...++ +........+..++ ..+.+|||||. +.+......
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4799999999999999999 99988866 33333 22333334555565 45789999996 333333333
Q ss_pred hc----ccCcEEEEEEECCChhhH-HHHHHHHHHHHhHC-CCCceEEEeecCCCCCCCCCCcccch----HHHHHHHHHH
Q 023335 167 AC----KDAVAILFMFDLTSRCTL-NSIVGWYSEARKWN-QTAIPILIGTKFDDFVRLPPDLQWTI----ATQARAYAKA 236 (283)
Q Consensus 167 ~~----~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~-~~~~~ilvgnK~DL~~~l~~~~~~~~----~~~~~~~~~~ 236 (283)
++ +++|++|+|+|+++.... ..+..|+.++.... .+.|.||++||.||. ........ .+.++.+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~---~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA---GGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT---TCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC---CCCHHHHHhhcccHHHHHHHHH
Confidence 33 899999999999853211 11223333332111 134557999999962 11111111 1457888888
Q ss_pred cCCcEEEEcCCC-----CcCHHHHHHHHHHHHhCC
Q 023335 237 MKATLFFSSATH-----NINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 237 ~~~~~~e~Sa~~-----~~~v~~lf~~l~~~i~~~ 266 (283)
.+..++.+++.. +.||+++++.|.+.+.+.
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 888887766554 589999999998888653
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.76 E-value=5.5e-19 Score=162.12 Aligned_cols=161 Identities=11% Similarity=0.083 Sum_probs=113.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcC--------ccccc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGN--------EQERS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--------~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
...+||+++|.+++|||||+ ++++. .+... ..+.|.++....+.++.....+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45799999999999999999 99873 22111 012233333344445444567899999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
......+++.+|++|+|+|+++.... ....|+..+... ..| +|+|+||+|+. .+.. .....++++++++.++
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~~--~ip~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQV--GVPYIVVFMNKVDMV---DDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHHT--TCCCEEEEEECGGGC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCEEEEEEECcccc---CcHHHHHHHHHHHHHHHHHhc
Confidence 88888889999999999999987543 335566655543 345 46899999972 1111 1123456777887776
Q ss_pred -----CcEEEEcCCCCcC------------------HHHHHHHHHHHHh
Q 023335 239 -----ATLFFSSATHNIN------------------VNKIFKFIMAKLF 264 (283)
Q Consensus 239 -----~~~~e~Sa~~~~~------------------v~~lf~~l~~~i~ 264 (283)
++++++||++|.| +.++++.+.+.+.
T Consensus 163 ~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 163 FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 6799999999987 7788888777654
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=2.3e-19 Score=166.99 Aligned_cols=155 Identities=15% Similarity=0.178 Sum_probs=99.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCC--------CCCcccchhhhc
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGG--------DSRSFDHVPIAC 168 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G--------~~~~~~~~~~~~ 168 (283)
+...+|+|+|.+|||||||+ ++++..+....++.|.+.......+......+.+|||+| ++.+......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 34679999999999999999 999987763333445554444555554556789999999 555666778889
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC-cEEEEcCC
Q 023335 169 KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA-TLFFSSAT 247 (283)
Q Consensus 169 ~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~e~Sa~ 247 (283)
+.+|++|+|+|..+..+.. ..|+.++... .+.|+|||+||+|+. .. .....++. ..+. ..+++||+
T Consensus 101 ~~ad~il~VvD~~~~~~~~--d~~l~~~l~~-~~~pvilV~NK~D~~----~~-----~~~~~e~~-~lg~~~~~~iSA~ 167 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAA--DEEVAKILYR-TKKPVVLAVNKLDNT----EM-----RANIYDFY-SLGFGEPYPISGT 167 (456)
T ss_dssp HHCSEEEEEEESSSCSCHH--HHHHHHHHTT-CCSCEEEEEECC------------------CCSG-GGSSSSEEECCTT
T ss_pred hhCCEEEEEEeCCCCCChH--HHHHHHHHHH-cCCCEEEEEECccch----hh-----hhhHHHHH-HcCCCceEEeecc
Confidence 9999999999987643332 3343333322 356678999999962 11 11111111 2233 56799999
Q ss_pred CCcCHHHHHHHHHHHHhC
Q 023335 248 HNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 248 ~~~~v~~lf~~l~~~i~~ 265 (283)
+|.|++++|+.+.+.+..
T Consensus 168 ~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp TCTTHHHHHHHHHTTGGG
T ss_pred cccchHHHHHHHHhhccc
Confidence 999999999999887654
No 161
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=3e-18 Score=142.42 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCC----------cccchhhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR----------SFDHVPIA 167 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~ 167 (283)
..+|+++|.+|||||||+ ++++..+. ...++.|.......+.+++ .+.+|||+|... +......+
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 579999999999999999 99887754 3344556554444444444 467899999753 22222334
Q ss_pred c---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--Cc
Q 023335 168 C---KDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--AT 240 (283)
Q Consensus 168 ~---~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~ 240 (283)
+ ..++++++++|+++..++.. +..|+.. ...+.++|+||+|+ ++...+....+.+..++...+ +.
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-----~~~~~~~v~nK~D~---~s~~~~~~~~~~~~~~~~~~~~~~~ 174 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-----SNIAVLVLLTKADK---LASGARKAQLNMVREAVLAFNGDVQ 174 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-----TTCCEEEEEECGGG---SCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred HHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-----cCCCeEEEEecccC---CCchhHHHHHHHHHHHHHhcCCCCc
Confidence 4 57899999999998766542 3344432 23455788999996 332222222455666666654 46
Q ss_pred EEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 241 LFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 241 ~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
++++||+++.|++++++.|.+.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC---
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 778999999999999999988876544
No 162
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=1.9e-18 Score=152.44 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=105.3
Q ss_pred HhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh-hHHHHH
Q 023335 115 SFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIV 190 (283)
Q Consensus 115 SLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~ 190 (283)
+|+ +++.+.|. .+.||+|..+. ..+..++ .+++||+ +++|..+++.|++++|++|+|||+++++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 799 99999997 45568885543 3332232 6889999 9999999999999999999999999997 799999
Q ss_pred HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcCHHHHHHHHH
Q 023335 191 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 191 ~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
.|+..++. .+.|++||+||+|| .+. .. .+++.++++.++ +.++++||++|.||+++|..+.
T Consensus 106 ~~l~~~~~--~~~piilv~NK~DL----~~~--~~-v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK--NELETVMVINKMDL----YDE--DD-LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH--TTCEEEEEECCGGG----CCH--HH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH--CCCCEEEEEeHHHc----CCc--hh-HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 99998865 35677899999996 221 11 245777787777 8999999999999999998765
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.75 E-value=1.4e-18 Score=160.76 Aligned_cols=154 Identities=14% Similarity=0.088 Sum_probs=103.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCcc---ccc---------c-ccc-------------------eeeeeEEEEEECC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQ---ERS---------L-QMA-------------------GLNLINKTLMVQG 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~---~~~---------~-~t~-------------------~~~~~~~~~~~~~ 144 (283)
...+||+++|..++|||||+ +++++.. ... . .|+ |.........+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45699999999999999999 9976541 110 1 121 1111111222333
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ- 223 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~- 223 (283)
....+.+|||||+++|......++..+|++|+|+|+++....+ ...|+..+... ...+.|+|+||+|+. ..+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~-~~~~iIvviNK~Dl~---~~~~~~ 176 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLL-GIKHIVVAINKMDLN---GFDERV 176 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHT-TCCEEEEEEECTTTT---TSCHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHc-CCCeEEEEEEcCcCC---cccHHH
Confidence 3467899999999999888888899999999999999865333 34455444432 222457899999972 21111
Q ss_pred -cchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHHH
Q 023335 224 -WTIATQARAYAKAMK-----ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 224 -~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~lf 256 (283)
....+++.++++.++ ++++++||++|.|++++|
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~ 215 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS 215 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence 123567778888887 678999999999999853
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.75 E-value=5.3e-18 Score=161.91 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=105.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccc-----cceeeeeEEEE------------EECCeEEEEEEEeCCCCCCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQ-----MAGLNLINKTL------------MVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~-----t~~~~~~~~~~------------~~~~~~~~l~i~Dt~G~~~~ 160 (283)
+..+|+++|..++|||||+ ++++..+....+ +.+..+..... .++.....+.||||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4679999999999999999 998766543222 22322211100 00011125899999999999
Q ss_pred ccchhhhcccCcEEEEEEECCC---hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-----------ccch
Q 023335 161 FDHVPIACKDAVAILFMFDLTS---RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-----------QWTI 226 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~---~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-----------~~~~ 226 (283)
..+...+++.+|++|+|||+++ +++++.+.. ++. .+.|.|+++||+|+........ ....
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 9999999999999999999999 667665442 222 2456789999999743221110 0000
Q ss_pred HH-------HHHHHHHHcC---------------CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 227 AT-------QARAYAKAMK---------------ATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 227 ~~-------~~~~~~~~~~---------------~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.+ +........+ ++++++||++|.|+++++++|...+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 11 1111112222 37899999999999999999998764
No 165
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.75 E-value=1.7e-18 Score=158.45 Aligned_cols=160 Identities=11% Similarity=0.092 Sum_probs=110.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc-------cccc--c------ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE-------QERS--L------QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH 163 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~-------~~~~--~------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 163 (283)
.+||+++|..++|||||+ ++++.. +... . ...|.+.....+.++.....+.+|||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 689999999999999999 998641 1100 0 01233332233344444567889999999998888
Q ss_pred hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC---
Q 023335 164 VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK--- 238 (283)
Q Consensus 164 ~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~--- 238 (283)
...+++.+|++|+|+|+++....+....| ..+... ..| .|+|+||+|+. .+.. .....++++++++.++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~~--~vp~iivviNK~Dl~---~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHL-LLARQI--GVEHVVVYVNKADAV---QDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHHT--TCCCEEEEEECGGGC---SCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHHc--CCCeEEEEEECcccC---CCHHHHHHHHHHHHHHHHHcCCCc
Confidence 88889999999999999986544443333 444332 345 36899999962 1111 1123567778888776
Q ss_pred --CcEEEEcCCCCcC----------HHHHHHHHHHHHhC
Q 023335 239 --ATLFFSSATHNIN----------VNKIFKFIMAKLFN 265 (283)
Q Consensus 239 --~~~~e~Sa~~~~~----------v~~lf~~l~~~i~~ 265 (283)
++++++||++|.| ++++|+.|.+.+..
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 5899999999775 89999998887653
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=4.6e-18 Score=160.44 Aligned_cols=111 Identities=12% Similarity=0.114 Sum_probs=80.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc------------------Cccccccc---cceeee--eEEEEEECCeEEEEEEEeC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG------------------NEQERSLQ---MAGLNL--INKTLMVQGARIAFSIWDV 154 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~------------------~~~~~~~~---t~~~~~--~~~~~~~~~~~~~l~i~Dt 154 (283)
...+|+|+|.+|+|||||+ +++. ..+....+ ..|.++ ....+... .+.+++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYK--DYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEET--TEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeC--CEEEEEEEC
Confidence 3579999999999999999 9961 11111111 112222 22334444 467899999
Q ss_pred CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
||++.|......+++.+|++|+|+|+++..+.+....|. .+... +.|.|+|+||+|+
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~~--~iPiivviNK~Dl 146 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRLR--HTPIMTFINKMDR 146 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHTT--TCCEEEEEECTTS
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHHc--CCCEEEEEeCCCC
Confidence 999999999999999999999999999987777766553 33332 4566899999997
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.75 E-value=3.4e-19 Score=166.22 Aligned_cols=157 Identities=11% Similarity=0.051 Sum_probs=91.3
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhc--Ccccc-------------------------c-----cccceeeeeEEEEEECC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVG--NEQER-------------------------S-----LQMAGLNLINKTLMVQG 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~--~~~~~-------------------------~-----~~t~~~~~~~~~~~~~~ 144 (283)
...++|+++|..++|||||+ +++. +.+.+ . ......+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 45789999999999999999 9864 22210 0 00111111112333343
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCCh---hhHHHHHHHHHHHHhH-CCCCc-eEEEeecCCCCCCC-
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSR---CTLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRL- 218 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~---~s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~DL~~~l- 218 (283)
..+.||||||+++|......+++.+|++|+|+|+++. .+|+....|.+.+... ....| +|||+||+|+...-
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~ 198 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW 198 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence 5689999999999998888889999999999999986 3444322333333222 12344 57999999972110
Q ss_pred CCCcccchHHHHHHHHHHc-C------CcEEEEcCCCCcCHHHHH
Q 023335 219 PPDLQWTIATQARAYAKAM-K------ATLFFSSATHNINVNKIF 256 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~-~------~~~~e~Sa~~~~~v~~lf 256 (283)
..+....+.+++.++++.. + ++++++||++|.|+.++|
T Consensus 199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 0111123456677777776 4 568999999999998865
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.8e-18 Score=164.64 Aligned_cols=156 Identities=14% Similarity=0.104 Sum_probs=100.0
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc-cc-------------------------------cccceeeeeEEEEEEC
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE-RS-------------------------------LQMAGLNLINKTLMVQ 143 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~-------------------------------~~t~~~~~~~~~~~~~ 143 (283)
....+||+++|.+|+|||||+ ++++.... .. .+.+..+.....+..
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~- 242 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST- 242 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-
Confidence 345799999999999999999 99866322 11 011222222223333
Q ss_pred CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHHHHHHHHHHHHhH-CCCCc-eEEEeecCCCCCCC
Q 023335 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLNSIVGWYSEARKW-NQTAI-PILIGTKFDDFVRL 218 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~~~~~~~~~i~~~-~~~~~-~ilvgnK~DL~~~l 218 (283)
....+.||||||+++|......+++.+|++|+|+|+++.. +|.....+...+... ....+ +|||+||+|+...
T Consensus 243 -~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~- 320 (611)
T 3izq_1 243 -HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDW- 320 (611)
T ss_dssp -SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTT-
T ss_pred -CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccch-
Confidence 3467899999999999888888999999999999998742 111111112211111 12334 5789999997210
Q ss_pred CCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023335 219 PPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI 255 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~l 255 (283)
.........+++..++...+ ++++++||++|.||.++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 00111122455666666554 47999999999999876
No 169
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.73 E-value=1.1e-17 Score=151.60 Aligned_cols=146 Identities=7% Similarity=-0.054 Sum_probs=105.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEEC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDL 180 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~ 180 (283)
+|+++|.+++|||||+ +++. .-.|.... ... +......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~-----~giTi~~~--~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK-----KGTSSDIT--MYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE-----EEEESSSE--EEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHh-----CCEEEEee--EEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 9999999999999999 9981 11122222 223 33334568999999999998777778899999999999
Q ss_pred CChhhHHHHHHHHHHHHhHCCCCce-EEEee-cCCCCCCCCCCcc-cchHHHHHHHHHHcC---CcEEE--EcCCC---C
Q 023335 181 TSRCTLNSIVGWYSEARKWNQTAIP-ILIGT-KFDDFVRLPPDLQ-WTIATQARAYAKAMK---ATLFF--SSATH---N 249 (283)
Q Consensus 181 ~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgn-K~DL~~~l~~~~~-~~~~~~~~~~~~~~~---~~~~e--~Sa~~---~ 249 (283)
+ ...+....+|+..+... ..|. |+++| |+|+ +... ....++++++++..+ +++++ +||++ +
T Consensus 93 ~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-----~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g 164 (370)
T 2elf_A 93 P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-----HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPF 164 (370)
T ss_dssp T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-----CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTT
T ss_pred C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-----CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCC
Confidence 4 44555666676666543 3455 78888 9994 2111 112356666666554 68999 99999 9
Q ss_pred cCHHHHHHHHHHHHhC
Q 023335 250 INVNKIFKFIMAKLFN 265 (283)
Q Consensus 250 ~~v~~lf~~l~~~i~~ 265 (283)
+|++++++.|.+.+..
T Consensus 165 ~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 165 EGVDELKARINEVAEK 180 (370)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccc
Confidence 9999999999887643
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=2e-18 Score=160.60 Aligned_cols=153 Identities=9% Similarity=0.066 Sum_probs=101.8
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcC--cccc------------------------c------cccceeeeeEEEEEECC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGN--EQER------------------------S------LQMAGLNLINKTLMVQG 144 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~--~~~~------------------------~------~~t~~~~~~~~~~~~~~ 144 (283)
...++|+++|.+++|||||+ ++++. .+.. . ......+.....+ +.
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~--~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKF--ET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEE--EC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEE--ec
Confidence 45799999999999999999 99864 1110 0 0111222222233 33
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hHH---HHHHHHHHHHhHCCCCc-eEEEeecCCCCCC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TLN---SIVGWYSEARKWNQTAI-PILIGTKFDDFVR 217 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~~---~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~ 217 (283)
....+.||||||+++|......++..+|++|+|+|+++.. +|+ ....++..+.. ...+ +|+|+||+|+...
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~ 160 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKW 160 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccC
Confidence 4467999999999999888888999999999999999753 332 22223333322 2334 5789999997210
Q ss_pred CCCCcccchHHHHHHHHHHcC-----CcEEEEcCCCCcCHHHH
Q 023335 218 LPPDLQWTIATQARAYAKAMK-----ATLFFSSATHNINVNKI 255 (283)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~v~~l 255 (283)
+++......+++.++++.++ ++++++||++|+|+.++
T Consensus 161 -~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 161 -DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred -CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 01111234567777777776 58999999999999754
No 171
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.72 E-value=5e-19 Score=165.39 Aligned_cols=155 Identities=11% Similarity=0.130 Sum_probs=104.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILF 176 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iil 176 (283)
+..+|+++|..++|||||+ ++.+..+. ...+++..+.....+.+++ ..+.||||||++.|..++..++..+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999 99887665 3333333333222333444 357899999999999999999999999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcC--CcEEEEcCCCCcC
Q 023335 177 MFDLTSR---CTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMK--ATLFFSSATHNIN 251 (283)
Q Consensus 177 v~D~~~~---~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~e~Sa~~~~~ 251 (283)
|||+++. ++++.+ ..+.. .+.|+|+++||+|+...-++.-.... .+...+++.++ ++++++||++|.|
T Consensus 81 VVda~~g~~~qT~e~l----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l-~~~~~~~~~~~~~~~~v~vSAktG~g 153 (501)
T 1zo1_I 81 VVAADDGVMPQTIEAI----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNEL-SQYGILPEEWGGESQFVHVSAKAGTG 153 (501)
T ss_dssp EEETTTBSCTTTHHHH----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCC-CCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred EeecccCccHHHHHHH----HHHHh--cCceEEEEEEeccccccCHHHHHHHH-HHhhhhHHHhCCCccEEEEeeeeccC
Confidence 9999884 444332 22222 24567899999997421111000000 00001122233 6899999999999
Q ss_pred HHHHHHHHHHH
Q 023335 252 VNKIFKFIMAK 262 (283)
Q Consensus 252 v~~lf~~l~~~ 262 (283)
++++|+++...
T Consensus 154 I~eLle~I~~~ 164 (501)
T 1zo1_I 154 IDELLDAILLQ 164 (501)
T ss_dssp CTTHHHHTTTT
T ss_pred cchhhhhhhhh
Confidence 99999998753
No 172
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=2.1e-18 Score=152.16 Aligned_cols=162 Identities=9% Similarity=0.108 Sum_probs=87.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC-ccc-ccc--------ccceeeeeEEEEEECCeEEEEEEEeCCCC-------CCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN-EQE-RSL--------QMAGLNLINKTLMVQGARIAFSIWDVGGD-------SRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~-~~~-~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~ 160 (283)
..++|+|+|++|||||||+ ++.+. .+. ... ++.+.......+..++....+.+||++|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4689999999999999999 87664 443 221 12222222222233455678999999998 666
Q ss_pred ccchh-------hhcccCc-------------EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 161 FDHVP-------IACKDAV-------------AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 161 ~~~~~-------~~~~~ad-------------~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
..+.. .++++.+ +++++.+.+ ..+|+.+. .+.++......+.++|+||+|+ ...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~--~~~l~~l~~~~~iilV~~K~Dl---~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLD--VAFMKAIHNKVNIVPVIAKADT---LTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHH--HHHHHHHTTTSCEEEEECCGGG---SCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHH--HHHHHHHHhcCCEEEEEEeCCC---CCH
Confidence 66554 5554333 333333322 22344433 1334444445567899999996 221
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHhCCc
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 267 (283)
.......+++.++++.+++.+|++||+++ |++++|..+.+.+.+..
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 11122357888999999999999999999 99999999999886543
No 173
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.72 E-value=8.7e-18 Score=150.99 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=92.9
Q ss_pred eEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhH--CCCCceEEEeecC
Q 023335 145 ARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLT----------SRCTLNSIVGWYSEARKW--NQTAIPILIGTKF 212 (283)
Q Consensus 145 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~----------~~~s~~~~~~~~~~i~~~--~~~~~~ilvgnK~ 212 (283)
..+.+++|||+|++.|+.++..|+++++++|+|||++ +.++|++...|++.+... .++.|+||||||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 6789999999999999999999999999999999998 788999999999988764 3456668999999
Q ss_pred CCCCC-C-----------CCCc----ccchHHHHHHHHHH----------------cCCcEEEEcCCCCcCHHHHHHHHH
Q 023335 213 DDFVR-L-----------PPDL----QWTIATQARAYAKA----------------MKATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 213 DL~~~-l-----------~~~~----~~~~~~~~~~~~~~----------------~~~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
||..+ + ++-. .....+++.+++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 97321 0 0000 01124666776443 123468999999999999999999
Q ss_pred HHHhCC
Q 023335 261 AKLFNL 266 (283)
Q Consensus 261 ~~i~~~ 266 (283)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 174
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.72 E-value=1.9e-17 Score=150.63 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=99.9
Q ss_pred cceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhH
Q 023335 130 MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARKW 199 (283)
Q Consensus 130 t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~~ 199 (283)
|+|++. ..+.+++ +.+++|||+|++.++.++..||++++++|||||+++ .++|+++..|++.+...
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~ 279 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN 279 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence 445544 3555654 789999999999999999999999999999999999 89999999999998875
Q ss_pred --CCCCceEEEeecCCCCCC-C---C-C-------C-------------cccchHHHHHHHH-----HH--------cCC
Q 023335 200 --NQTAIPILIGTKFDDFVR-L---P-P-------D-------------LQWTIATQARAYA-----KA--------MKA 239 (283)
Q Consensus 200 --~~~~~~ilvgnK~DL~~~-l---~-~-------~-------------~~~~~~~~~~~~~-----~~--------~~~ 239 (283)
..+.|+||||||+||... + . + - ......+++..|+ +. .++
T Consensus 280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~ 359 (402)
T 1azs_C 280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC 359 (402)
T ss_dssp TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence 345666899999997311 0 0 0 0 0000135555553 22 245
Q ss_pred cEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 240 TLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
.+++|||+++.||+++|.++.+.+.+.
T Consensus 360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 360 YPHFTCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeecCcCHHHHHHHHHHHHHHH
Confidence 677899999999999999998887654
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.70 E-value=1.8e-17 Score=165.76 Aligned_cols=162 Identities=10% Similarity=0.074 Sum_probs=111.4
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCc-------ccc--------ccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNE-------QER--------SLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~-------~~~--------~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
....+||+++|..++|||||+ ++++.. +.. ...+.|+++....+.++.....+.||||||+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 445799999999999999999 998641 100 0113344433333444455567899999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCCCCCCCc-ccchHHHHHHHHHHcC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFVRLPPDL-QWTIATQARAYAKAMK 238 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~~~~~ 238 (283)
......+++.+|++|+|+|+++....+ ...|+..+... +.| +|||+||+|+. .+.. ...+.+++.++++.++
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv---~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMV---DDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTC---CCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccc---cchhhHHHHHHHHHHHHHhcc
Confidence 888888899999999999999864333 33455555443 345 47899999972 1111 1123567778888776
Q ss_pred -----CcEEEEcCCCC--------cCHHHHHHHHHHHHh
Q 023335 239 -----ATLFFSSATHN--------INVNKIFKFIMAKLF 264 (283)
Q Consensus 239 -----~~~~e~Sa~~~--------~~v~~lf~~l~~~i~ 264 (283)
++++++||++| .|++++|+.|.+.+.
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 58999999999 579999999887664
No 176
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.69 E-value=6.1e-18 Score=148.39 Aligned_cols=157 Identities=14% Similarity=0.099 Sum_probs=96.8
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-------ccccc----------------------ceee--------------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-------RSLQM----------------------AGLN-------------- 134 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-------~~~~t----------------------~~~~-------------- 134 (283)
..+||+|+|.+|||||||+ ++++..+. ...|+ +..+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999 99998864 11122 0000
Q ss_pred -------eeEEEEEECC-eEEEEEEEeCCCCCC-------------cccchhhhcccCcEEE-EEEECCChhhHHHHHHH
Q 023335 135 -------LINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAIL-FMFDLTSRCTLNSIVGW 192 (283)
Q Consensus 135 -------~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~ii-lv~D~~~~~s~~~~~~~ 192 (283)
.....+.+.+ ....+.+|||||... +..+...|++.++.+| +|+|+++..+..+...|
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 0000111100 125689999999642 3445667888888776 79999876554444445
Q ss_pred HHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHc--C-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 193 YSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAM--K-ATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 193 ~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~--~-~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
+..+.. .+.|.++|+||+|+. ... . ...+.++...... + .+++++||++|.|++++|+.+.+.
T Consensus 185 ~~~~~~--~~~~~i~V~NK~Dl~---~~~-~-~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 185 AKEVDP--QGQRTIGVITKLDLM---DEG-T-DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHCT--TCSSEEEEEECGGGS---CTT-C-CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHhCC--CCCeEEEEEEccccC---CCC-c-hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 555432 245668999999972 221 1 1122221100011 2 256779999999999999998873
No 177
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.68 E-value=6.5e-17 Score=145.79 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=94.8
Q ss_pred ccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCC----------hhhHHHHHHHHHHHHh
Q 023335 129 QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTS----------RCTLNSIVGWYSEARK 198 (283)
Q Consensus 129 ~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~----------~~s~~~~~~~~~~i~~ 198 (283)
+|+|++. ..+.+++ +.+++|||+|++.++..+..|+++++++|||||+++ .++|++...|+..+..
T Consensus 187 ~T~Gi~~--~~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~ 262 (362)
T 1zcb_A 187 PTKGIHE--YDFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN 262 (362)
T ss_dssp CCSSEEE--EEEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT
T ss_pred CccceEE--EEeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc
Confidence 3556553 3455554 779999999999999999999999999999999999 7799999999998876
Q ss_pred H--CCCCceEEEeecCCCCCC----------CCCCccc-chHHHHHHHHH-----------HcCCcEEEEcCCCCcCHHH
Q 023335 199 W--NQTAIPILIGTKFDDFVR----------LPPDLQW-TIATQARAYAK-----------AMKATLFFSSATHNINVNK 254 (283)
Q Consensus 199 ~--~~~~~~ilvgnK~DL~~~----------l~~~~~~-~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~v~~ 254 (283)
. ..+.|+||++||+||..+ +++-... ...+++.+++. ..++.+++|||+++.||++
T Consensus 263 ~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 263 NRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp CGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHH
T ss_pred chhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHH
Confidence 4 345666899999997311 0100011 33567776652 3457788999999999999
Q ss_pred HHHHHHHHHhCC
Q 023335 255 IFKFIMAKLFNL 266 (283)
Q Consensus 255 lf~~l~~~i~~~ 266 (283)
+|+++.+.+.+.
T Consensus 343 vF~~v~~~i~~~ 354 (362)
T 1zcb_A 343 VFRDVKDTILHD 354 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 178
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=4.8e-18 Score=162.50 Aligned_cols=152 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred CceeeEEEEEcCCCCcHHHhH-hhhcCccc--------------------------------cccccceeeeeEEEEEEC
Q 023335 97 DLVSLKISLLGDCQIGKTSFV-KYVGNEQE--------------------------------RSLQMAGLNLINKTLMVQ 143 (283)
Q Consensus 97 ~~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------------------------~~~~t~~~~~~~~~~~~~ 143 (283)
....++|+++|.+++|||||+ +|+...-. +..+.++.+.. ...+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~--~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVA--STTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEee--EEEEE
Confidence 345689999999999999999 99642110 00112222222 22233
Q ss_pred CeEEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChh---hH---HHHHHHHHHHHhHCCCCc-eEEEeecCCCCC
Q 023335 144 GARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRC---TL---NSIVGWYSEARKWNQTAI-PILIGTKFDDFV 216 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~---s~---~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~ 216 (283)
.....+.||||||++.|......+++.+|++|||+|+++.. .+ ......+..+.. . ..| +|||+||+|+..
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-l-gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-L-GISEIVVSVNKLDLMS 329 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-S-SCCCEEEEEECGGGGT
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-c-CCCeEEEEEecccccc
Confidence 33467899999999999888888999999999999998632 11 011112222222 2 334 578999999621
Q ss_pred CCCCCcccchHHHHHHHH-HHcCC-----cEEEEcCCCCcCHH
Q 023335 217 RLPPDLQWTIATQARAYA-KAMKA-----TLFFSSATHNINVN 253 (283)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~-~~~~~-----~~~e~Sa~~~~~v~ 253 (283)
. .......+.+++..+. +..++ +++++||++|.||.
T Consensus 330 ~-~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 W-SEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp T-CHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred c-cHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 0 0111112345556665 55555 68999999999998
No 179
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=3.3e-17 Score=149.59 Aligned_cols=83 Identities=19% Similarity=0.227 Sum_probs=47.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEE--E-------------------EECC-eEEEEEEEeCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKT--L-------------------MVQG-ARIAFSIWDVGG 156 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~--~-------------------~~~~-~~~~l~i~Dt~G 156 (283)
+||+++|.+|||||||+ ++++.... ..+|.+..+..... + .+++ ..+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999 99988743 55553222222221 1 1233 257899999999
Q ss_pred CCC----cccchh---hhcccCcEEEEEEECCCh
Q 023335 157 DSR----SFDHVP---IACKDAVAILFMFDLTSR 183 (283)
Q Consensus 157 ~~~----~~~~~~---~~~~~ad~iilv~D~~~~ 183 (283)
... +..+.. .+++++|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 233333 356899999999999876
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.66 E-value=1.2e-15 Score=131.74 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=84.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhhhcc------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACK------ 169 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 169 (283)
..+||+++|..|||||||+ ++++..+. ..++++........+..++. .+.+|||||++.+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF--TINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE--EEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe--eEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 4799999999999999999 99998864 44444444444555566664 6889999999988766655554
Q ss_pred ---cCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCC---CceEEEeecCCC
Q 023335 170 ---DAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD 214 (283)
Q Consensus 170 ---~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~DL 214 (283)
++|++++|+|++... +... ..|++.+...... .+.++|+||+|+
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl 163 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQF 163 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCccc
Confidence 889999999998755 4433 4788877765432 255899999997
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.66 E-value=4.6e-16 Score=150.85 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=79.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRS 160 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 160 (283)
...+|+|+|..|+|||||+ ++++.... ...+ ..++.+......+....+.+++|||+|++.|
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 3578999999999999999 98743221 0000 1133333333334334577899999999999
Q ss_pred ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
......+++.+|++++|+|+++....+. ..|+..+... +.|+|+|+||+|+
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~--~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL--GLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT--TCCEEEEEECGGG
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc--cCCEEEEecCCch
Confidence 8888899999999999999987655443 3444555442 4566899999996
No 182
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.5e-16 Score=145.88 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=85.9
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc-cc--------cccceeeeeEEEEEECCeEEEEEEEeCCCCCCcc-------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE-RS--------LQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSF------- 161 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~--------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------- 161 (283)
..++|+|+|++|||||||+ .+++..+. .. .++.+.+.....+..++....+.+||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4689999999999999999 99887663 21 1233322222222234445679999999976531
Q ss_pred c------------------chhhhcccCcEEEEEEECCCh-hhHHHHH-HHHHHHHhHCCCCceEEEeecCCCCCCCCCC
Q 023335 162 D------------------HVPIACKDAVAILFMFDLTSR-CTLNSIV-GWYSEARKWNQTAIPILIGTKFDDFVRLPPD 221 (283)
Q Consensus 162 ~------------------~~~~~~~~ad~iilv~D~~~~-~s~~~~~-~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~ 221 (283)
. +.+.++.++++.+++|+.... .++.... .|+..+. ...++|+|+||+|+ +...
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dl---l~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADT---LTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTS---SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccC---ccHH
Confidence 1 224456777777777776653 4565554 6777664 35566899999997 3221
Q ss_pred cccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 222 LQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
......+++.+++..+++.+|++||+++.+++++|..+...+
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 111113778888889999999999999999999888887654
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.62 E-value=1.6e-15 Score=131.55 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=78.7
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccchhh---------
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPI--------- 166 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------- 166 (283)
..+||+++|.+|+|||||+ ++++..+. ...+.+..+.....+..+ ...+.+|||||.+.+..+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4799999999999999999 99988864 333322222222333333 456899999999876543321
Q ss_pred hcccCcEEEEEEECCChhhHHHH-HHHHHHHHhHCCC---CceEEEeecCCC
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSI-VGWYSEARKWNQT---AIPILIGTKFDD 214 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~-~~~~~~i~~~~~~---~~~ilvgnK~DL 214 (283)
..+.+|++++|||++.. ++... ..|+..+...... .+.++|+||+|+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 13479999999999763 34433 4788888765332 466899999997
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.62 E-value=3e-16 Score=152.79 Aligned_cols=166 Identities=16% Similarity=0.147 Sum_probs=106.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--ccccccee--------eeeEE------------------------------
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGL--------NLINK------------------------------ 138 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~--------~~~~~------------------------------ 138 (283)
.++|+|+|.+|+|||||+ ++++..+. ...|++.. +....
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~~ 148 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKK 148 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHHH
Confidence 689999999999999999 99987754 34444310 00000
Q ss_pred ---------------EEEECCeE--EEEEEEeCCCCCC---cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 023335 139 ---------------TLMVQGAR--IAFSIWDVGGDSR---SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARK 198 (283)
Q Consensus 139 ---------------~~~~~~~~--~~l~i~Dt~G~~~---~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~ 198 (283)
.+.++... ..+.+|||||... .......+++++|++|+|+|+++..+..+...|.+.+..
T Consensus 149 l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~ 228 (695)
T 2j69_A 149 LEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG 228 (695)
T ss_dssp HHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT
T ss_pred HhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh
Confidence 01111100 2488999999654 334566788999999999999998888887777655543
Q ss_pred HCCCCceEEEeecCCCCCC--CCCCcccc---hHHHHHH-----HHHH--------cCCcEEEEcCC-------------
Q 023335 199 WNQTAIPILIGTKFDDFVR--LPPDLQWT---IATQARA-----YAKA--------MKATLFFSSAT------------- 247 (283)
Q Consensus 199 ~~~~~~~ilvgnK~DL~~~--l~~~~~~~---~~~~~~~-----~~~~--------~~~~~~e~Sa~------------- 247 (283)
. ..|.++|+||+|+... ..++.... ..+.... +... ....+|++||+
T Consensus 229 ~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~ 306 (695)
T 2j69_A 229 R--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQAD 306 (695)
T ss_dssp S--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCC
T ss_pred h--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhh
Confidence 2 3456899999997211 00000000 0111211 1111 12468999999
Q ss_pred -CCcCHHHHHHHHHHHHhCCc
Q 023335 248 -HNINVNKIFKFIMAKLFNLP 267 (283)
Q Consensus 248 -~~~~v~~lf~~l~~~i~~~~ 267 (283)
++.|++++++.+.+.+....
T Consensus 307 ~~~~Gi~~L~~~L~~~l~~~~ 327 (695)
T 2j69_A 307 LDGTGFPKFMDSLNTFLTRER 327 (695)
T ss_dssp CTTSSHHHHHHHHHHHHHHTH
T ss_pred hhccCHHHHHHHHHHHHHHhH
Confidence 99999999999998775543
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=2.7e-15 Score=145.94 Aligned_cols=113 Identities=15% Similarity=0.085 Sum_probs=80.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCc--cc------------cc-----cccceeeeeEEEEEECCeEEEEEEEeCCCC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNE--QE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGD 157 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~--~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~ 157 (283)
....+|+|+|..|+|||||+ +++... +. .. ............+.++ .+.+++|||+|+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 87 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--DHRINIIDTPGH 87 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--TEEEEEECCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--CeEEEEEECcCc
Confidence 45789999999999999999 998421 10 00 0011111112233334 367899999999
Q ss_pred CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 158 SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 158 ~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
..|......+++.+|++|+|+|+++..+++....|... .. .+.|+++|+||+|+.
T Consensus 88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~--~~~p~ivviNKiD~~ 142 (691)
T 1dar_A 88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK--YKVPRIAFANKMDKT 142 (691)
T ss_dssp TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH--TTCCEEEEEECTTST
T ss_pred cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH--cCCCEEEEEECCCcc
Confidence 99999999999999999999999998888877766643 33 255678999999974
No 186
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.61 E-value=2.4e-15 Score=141.95 Aligned_cols=114 Identities=11% Similarity=0.070 Sum_probs=75.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc--cc----------------c---ccccceeeeeEEEEEECCeEEEEEEEeCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE--QE----------------R---SLQMAGLNLINKTLMVQGARIAFSIWDVGG 156 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~--~~----------------~---~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G 156 (283)
...+|+++|.+|+|||||+ +++... +. + ...+.|.++......++...+.+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 3689999999999999999 998531 10 0 001222222222222333346789999999
Q ss_pred CCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 157 DSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 157 ~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
++.|......+++.+|++|+|+|+++...-.. ..++..+.. .+.|+++++||+|+.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~ 147 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRD 147 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCc
Confidence 99999888889999999999999988643222 223333222 245668999999974
No 187
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.59 E-value=1e-14 Score=142.10 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=80.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC--ccc------------cccc---cceeeeeE--EEEEEC-----CeEEEEEEEe
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN--EQE------------RSLQ---MAGLNLIN--KTLMVQ-----GARIAFSIWD 153 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~--~~~------------~~~~---t~~~~~~~--~~~~~~-----~~~~~l~i~D 153 (283)
...+|+|+|..++|||||+ +++.. .+. +..+ ..|.+... ..+.++ +..+.++|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 3579999999999999999 99742 111 0000 11222211 223332 3448899999
Q ss_pred CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
|+|+..|......+++.+|++|+|+|+++..+.+....|.. +.. .+.|+++|+||+|+.
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~ 147 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRM 147 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCcc
Confidence 99999999889999999999999999998876666555543 322 245668999999973
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.58 E-value=8.8e-16 Score=138.60 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=73.4
Q ss_pred EEEEEeCCCCCCc-------------ccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCC-CceEEEeecCC
Q 023335 148 AFSIWDVGGDSRS-------------FDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQT-AIPILIGTKFD 213 (283)
Q Consensus 148 ~l~i~Dt~G~~~~-------------~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~ilvgnK~D 213 (283)
.+.+|||||...+ ..+...|++++|++|+|+|.++.+... ..|+..++...+. .+.|+|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 5789999998876 456678899999999999976654322 3455555555443 45689999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHHHHH
Q 023335 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIFKFI 259 (283)
Q Consensus 214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l 259 (283)
+ +... ....+.+..++..++..|+++|+.++.++++.+..+
T Consensus 215 l---~~~~--~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 215 L---MDKG--TDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp G---CCTT--CCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred c---CCCc--ccHHHHHcCccccccCCeEEEEECChHHhccCCCHH
Confidence 7 3221 122344444455667889999999999988765543
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.57 E-value=1e-14 Score=142.02 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=80.5
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc--Cccc------------cc-----cccceeeeeEEEEEECCeEEEEEEEeCCCCC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG--NEQE------------RS-----LQMAGLNLINKTLMVQGARIAFSIWDVGGDS 158 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~--~~~~------------~~-----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 158 (283)
...+|+|+|.+|+|||||+ +++. +.+. +. .+.+........+.+++ +.+++|||+|+.
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--~~i~liDTPG~~ 86 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--HRVNIIDTPGHV 86 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT--EEEEEECCCCCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC--eeEEEEECcCCc
Confidence 3689999999999999999 9984 2221 00 01111111123344444 668999999999
Q ss_pred CcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC
Q 023335 159 RSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF 215 (283)
Q Consensus 159 ~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~ 215 (283)
.|......+++.+|++|+|+|+++..+++....|.. +... +.|+++|+||+|+.
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~~--~~p~ilviNK~Dl~ 140 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATTY--GVPRIVFVNKMDKL 140 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHHT--TCCEEEEEECTTST
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHHc--CCCEEEEEECCCcc
Confidence 999889999999999999999999888777666654 4332 45678999999974
No 190
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=5e-15 Score=130.82 Aligned_cols=115 Identities=12% Similarity=0.046 Sum_probs=69.9
Q ss_pred EEEEEEeCCCCCC-------------cccchhhhcccCcEEEEEEECCChhhH-HHHHHHHHHHHhHCCCCceEEEeecC
Q 023335 147 IAFSIWDVGGDSR-------------SFDHVPIACKDAVAILFMFDLTSRCTL-NSIVGWYSEARKWNQTAIPILIGTKF 212 (283)
Q Consensus 147 ~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~iilv~D~~~~~s~-~~~~~~~~~i~~~~~~~~~ilvgnK~ 212 (283)
..+.+|||||... +......+++++|++++|+|.++.... .....+...+.. ...|.++|+||+
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~ 208 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL 208 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence 4689999999764 334556688999999999998543211 111123333321 245668999999
Q ss_pred CCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCC---C---CcCHHHHHHHHHHHHhCCcc
Q 023335 213 DDFVRLPPDLQWTIATQARAYAKAMKATLFFSSAT---H---NINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 213 DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~---~---~~~v~~lf~~l~~~i~~~~~ 268 (283)
|+ .... . ...+.+......++..++++|+. + +.|+.++++.+.+.+...++
T Consensus 209 Dl---~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 209 DL---MDKG-T-DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TS---SCSS-C-CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred cc---CCcc-h-HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 97 2222 1 11222221111223567776655 4 78899999999988877665
No 191
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.57 E-value=3.2e-14 Score=127.70 Aligned_cols=144 Identities=13% Similarity=0.091 Sum_probs=94.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCcc-
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRSF- 161 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~- 161 (283)
.+||+++|.+|||||||+ ++++..+. ..+|.+..+.....+.+++.. ..+++|||+|..++.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 479999999999999999 99988754 556633333323345555532 568999999998753
Q ss_pred ---cchhh---hcccCcEEEEEEECCCh----------hhHHHHHHHHHHHH----------------------------
Q 023335 162 ---DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEAR---------------------------- 197 (283)
Q Consensus 162 ---~~~~~---~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i~---------------------------- 197 (283)
.+... +++++|++++|+|+++. ++++++..|..++.
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~ 161 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE 161 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence 33333 47899999999999862 44554443332221
Q ss_pred ------------h-------------------H--CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 198 ------------K-------------------W--NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 198 ------------~-------------------~--~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
. + ...+|.++++||.|.. + ....-.+.+++++...+++++.+
T Consensus 162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~--~---~~n~~~~~v~~~~~~~~~~~i~~ 236 (363)
T 1jal_A 162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDG--F---ENNPYLDRVREIAAKEGAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTC--S---SSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEeccccc--c---cccHHHHHHHHHHHHcCCCEEEe
Confidence 0 0 1125668999999941 1 11233677888888889999999
Q ss_pred cCCC
Q 023335 245 SATH 248 (283)
Q Consensus 245 Sa~~ 248 (283)
||+.
T Consensus 237 sA~~ 240 (363)
T 1jal_A 237 CAAI 240 (363)
T ss_dssp CHHH
T ss_pred chHH
Confidence 9764
No 192
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=7.8e-18 Score=141.71 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=86.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeee------------EEEEEEC-CeEE-----------------
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLI------------NKTLMVQ-GARI----------------- 147 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~------------~~~~~~~-~~~~----------------- 147 (283)
.+||+|+|.+|||||||+ +++...+.. ..++.+.++. ...+.++ +..+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 117 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNLD 117 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCGG
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhcC
Confidence 479999999999999999 999876653 3335554443 2333332 2112
Q ss_pred --EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 148 --AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 148 --~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
.+.+.|++|.-.. ...+-...+.++.+.|......... .....+ ..+.++|+||+|+. + ....
T Consensus 118 ~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~ 182 (226)
T 2hf9_A 118 EIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLA----D-AVGA 182 (226)
T ss_dssp GCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGH----H-HHTC
T ss_pred CCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccC----c-hhHH
Confidence 2333444442100 0011112334556666432111000 001111 24569999999961 1 1112
Q ss_pred hHHHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 226 IATQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
..+++.++++.+ +++++++||++|.|++++|+++.+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 183 DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 355666666654 5789999999999999999999987753
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.53 E-value=9.2e-15 Score=122.36 Aligned_cols=152 Identities=10% Similarity=0.034 Sum_probs=90.9
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccccceeeee------------EEEEEECC------------------eEE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQMAGLNLI------------NKTLMVQG------------------ARI 147 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~t~~~~~~------------~~~~~~~~------------------~~~ 147 (283)
..+|+++|.+|||||||+ +++...... .......++. ...+.++. ...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC 109 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence 468999999999999999 988653211 0001111100 01111211 234
Q ss_pred EEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchH
Q 023335 148 AFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIA 227 (283)
Q Consensus 148 ~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~ 227 (283)
.+.+|||+|+.... ..+...++.+++|+|+++.... ...+.... ..|.++|+||+|+. + ......
T Consensus 110 d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~~-----~~~~iiv~NK~Dl~----~-~~~~~~ 174 (221)
T 2wsm_A 110 DLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEIF-----RVADLIVINKVALA----E-AVGADV 174 (221)
T ss_dssp SEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHHH-----HTCSEEEEECGGGH----H-HHTCCH
T ss_pred CEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhhh-----hcCCEEEEecccCC----c-chhhHH
Confidence 67889999852111 1112357889999998765421 11222221 34668999999961 1 111224
Q ss_pred HHHHHHHHHc--CCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 228 TQARAYAKAM--KATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 228 ~~~~~~~~~~--~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
+++.++++.. +++++++||++|.|++++|++|.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 4555555554 46899999999999999999999887553
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.50 E-value=1.6e-14 Score=130.10 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=68.2
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+.+.||||+|... .....+..+|++++|+|.+..+.++.+..+ ....|.++|+||+|+ . .....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl----~--~~~~~ 235 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADG----E--HHKEA 235 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCG----G--GHHHH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCC----c--ChhHH
Confidence 5688999999433 233345899999999998776554333211 112366899999996 1 11111
Q ss_pred HHHHHHHHHH---c-------CCcEEEEcCCCCcCHHHHHHHHHHHHhC
Q 023335 227 ATQARAYAKA---M-------KATLFFSSATHNINVNKIFKFIMAKLFN 265 (283)
Q Consensus 227 ~~~~~~~~~~---~-------~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 265 (283)
.....++... . +.+++++||++|.|+++++++|.+.+..
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2222222222 2 5789999999999999999999987754
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.50 E-value=1.2e-15 Score=137.31 Aligned_cols=154 Identities=15% Similarity=0.120 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cc------ccc----------------------c------------------
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RS------LQM----------------------A------------------ 131 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~------~~t----------------------~------------------ 131 (283)
..+|+|+|.+|||||||+ ++++..+. .. .|+ +
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 579999999999999999 99998764 11 121 0
Q ss_pred ---eeeeeEEEEEECC-eEEEEEEEeCCCCCC-------------cccchhhhcccCcEEEE-EEECCChhhHHHHHHHH
Q 023335 132 ---GLNLINKTLMVQG-ARIAFSIWDVGGDSR-------------SFDHVPIACKDAVAILF-MFDLTSRCTLNSIVGWY 193 (283)
Q Consensus 132 ---~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~ad~iil-v~D~~~~~s~~~~~~~~ 193 (283)
|+......+.+.+ ....+.||||||... +..+...|+++++.+|+ |.|.+....-. .|.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~---~~~ 187 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANS---DAL 187 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGC---HHH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchh---HHH
Confidence 0000001111111 125689999999642 33455667766665555 45554321111 232
Q ss_pred HHHHhHCC-CCceEEEeecCCCCCCCCCCcccchHHHHHH--HHHHcC-CcEEEEcCCCCcCHHHHHHHHHH
Q 023335 194 SEARKWNQ-TAIPILIGTKFDDFVRLPPDLQWTIATQARA--YAKAMK-ATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 194 ~~i~~~~~-~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~--~~~~~~-~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
..++...+ ..+.|+|+||+|+. .... . ..+..+. +....+ ..++++||+++.|++++++.+.+
T Consensus 188 ~i~~~~~~~~~~~i~V~NK~Dl~---~~~~-~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEVDPQGQRTIGVITKLDLM---DEGT-D-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHCTTCTTEEEEEECGGGS---CTTC-C-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCcCCCceEEEecccccc---Ccch-h-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 23333333 44568999999972 2211 1 1111110 000112 24567999999999999999876
No 196
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.50 E-value=6.6e-14 Score=126.27 Aligned_cols=155 Identities=12% Similarity=0.078 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECC-------------------eEEEEEEEeCCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQG-------------------ARIAFSIWDVGGDSR 159 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~-------------------~~~~l~i~Dt~G~~~ 159 (283)
++|+++|.+|||||||+ ++++.... ..++.+..+.....+.+++ ....+++|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999 98876533 4444222222222333332 235689999999876
Q ss_pred cc----cchhh---hcccCcEEEEEEECCCh----------hhHHHHHHHHHHH--------------------------
Q 023335 160 SF----DHVPI---ACKDAVAILFMFDLTSR----------CTLNSIVGWYSEA-------------------------- 196 (283)
Q Consensus 160 ~~----~~~~~---~~~~ad~iilv~D~~~~----------~s~~~~~~~~~~i-------------------------- 196 (283)
+. .+... +++.+|++++|+|+++. +.+.++..+..++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~ 161 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL 161 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence 53 23333 47899999999999862 2333332211111
Q ss_pred ---------HhH-------------------------CCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335 197 ---------RKW-------------------------NQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242 (283)
Q Consensus 197 ---------~~~-------------------------~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
... ...+|.++++||.|.. +.......-.+.++++++..+++++
T Consensus 162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d--~~~~~~n~~~~~v~~~a~~~g~~vv 239 (368)
T 2dby_A 162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEED--LPDGRGNPQVEAVRRKALEEGAEVV 239 (368)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGG--TTTCTTCHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHh--hcccchhhHHHHHHHHHHHcCCeEE
Confidence 000 0124668999999831 1111112346778889988899999
Q ss_pred EEcCCCCcCHHHHHH
Q 023335 243 FSSATHNINVNKIFK 257 (283)
Q Consensus 243 e~Sa~~~~~v~~lf~ 257 (283)
++||+++.++.++++
T Consensus 240 ~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 240 VVSARLEAELAELSG 254 (368)
T ss_dssp EECHHHHHHHHTSCH
T ss_pred EeechhHHHHHHhch
Confidence 999988655554443
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.48 E-value=9.6e-14 Score=137.74 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=83.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCc------------cccc-----cc--cceeeeeEEEEE------------ECCeE
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNE------------QERS-----LQ--MAGLNLINKTLM------------VQGAR 146 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~------------~~~~-----~~--t~~~~~~~~~~~------------~~~~~ 146 (283)
...||+|+|..++|||||+ +++... +.+. .. |+........+. .++..
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4689999999999999999 998641 1110 11 222222222222 24457
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
+.+++|||+|+.+|......+++.+|++|+|||+++..+++....|..... .+.|+|+|+||+|+
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCc
Confidence 889999999999999999999999999999999999988888776765443 24567899999996
No 198
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=1.5e-12 Score=114.72 Aligned_cols=98 Identities=8% Similarity=0.018 Sum_probs=80.1
Q ss_pred CCCCcccchhhhcccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch-HHHHHHH
Q 023335 156 GDSRSFDHVPIACKDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI-ATQARAY 233 (283)
Q Consensus 156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~-~~~~~~~ 233 (283)
.++++..+.+.+++++|++++|||+++++ +++.+..|+..+.. .+.|+|||+||+|| .+ + ..+. .++..++
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL---~~-~-~~v~~~~~~~~~ 137 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDL---LN-E-EEKKELERWISI 137 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGG---CC-H-HHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccC---CC-c-cccHHHHHHHHH
Confidence 37888899999999999999999999986 89999999988765 45677999999997 22 1 1111 4556677
Q ss_pred HHHcCCcEEEEcCCCCcCHHHHHHHHH
Q 023335 234 AKAMKATLFFSSATHNINVNKIFKFIM 260 (283)
Q Consensus 234 ~~~~~~~~~e~Sa~~~~~v~~lf~~l~ 260 (283)
++..+++++++||++|.|++++|+.+.
T Consensus 138 ~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 138 YRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 777899999999999999999998754
No 199
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.35 E-value=4.4e-13 Score=120.36 Aligned_cols=101 Identities=10% Similarity=0.017 Sum_probs=59.7
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+.+.++||+|... ........+|++++|+|.++.+..+.+.. .+ -..+.++|.||+|+ .+ ....
T Consensus 167 ~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl---~~---~~~~ 230 (349)
T 2www_A 167 YDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDG---DL---IVPA 230 (349)
T ss_dssp CSEEEEECCCC-----CHHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSG---GG---HHHH
T ss_pred CCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecC---CC---chhH
Confidence 4578899999532 12334679999999999987543322221 11 13456899999996 11 1111
Q ss_pred HHHHHHHHH----------HcCCcEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 227 ATQARAYAK----------AMKATLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 227 ~~~~~~~~~----------~~~~~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
......+.. .++.+++.+||++|.|+++++++|.+.+
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 112222222 1245688999999999999999998865
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.34 E-value=1.2e-12 Score=124.15 Aligned_cols=113 Identities=15% Similarity=0.041 Sum_probs=77.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc----cccccceeeeeEE-----EEEEC-----------------------CeE
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE----RSLQMAGLNLINK-----TLMVQ-----------------------GAR 146 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~----~~~~t~~~~~~~~-----~~~~~-----------------------~~~ 146 (283)
..+|+|+|.+|||||||+ ++++..+. ...+++....... .+..+ +..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 579999999999999999 99998762 3344331100000 00000 000
Q ss_pred ---------EEEEEEeCCCCCC-----------cccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceE
Q 023335 147 ---------IAFSIWDVGGDSR-----------SFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI 206 (283)
Q Consensus 147 ---------~~l~i~Dt~G~~~-----------~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~i 206 (283)
..+.||||+|... |......++..+|++|+|+|+++....+....|+..+... ..+.+
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~pvi 222 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDKIR 222 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGGEE
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCCEE
Confidence 2588999999764 3345666789999999999998866666666777766532 34568
Q ss_pred EEeecCCC
Q 023335 207 LIGTKFDD 214 (283)
Q Consensus 207 lvgnK~DL 214 (283)
+|+||+|+
T Consensus 223 lVlNK~Dl 230 (550)
T 2qpt_A 223 VVLNKADM 230 (550)
T ss_dssp EEEECGGG
T ss_pred EEEECCCc
Confidence 99999996
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.32 E-value=7.2e-13 Score=118.64 Aligned_cols=105 Identities=10% Similarity=-0.020 Sum_probs=63.1
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+.+.||||+|...... ...+.+|++++|+|.++.+.++.+... .. +.|.++|+||+|+. ........
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~~----~~p~ivv~NK~Dl~---~~~~~~~~ 215 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---LM----EVADLIVINKDDGD---NHTNVAIA 215 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---HH----HHCSEEEECCCCTT---CHHHHHHH
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---hh----cccCEEEEECCCCC---ChHHHHHH
Confidence 5688999999654332 246899999999999765432221111 10 23558999999961 11000001
Q ss_pred HHHHHHHHHHc-------CCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 227 ATQARAYAKAM-------KATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 227 ~~~~~~~~~~~-------~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.++.++..... ..+++++||++|.|++++++.|.+.+.
T Consensus 216 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 216 RHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 12233222222 346889999999999999999988764
No 202
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.29 E-value=1.2e-11 Score=105.97 Aligned_cols=113 Identities=10% Similarity=0.005 Sum_probs=66.3
Q ss_pred EEEEEEeCCCCCCcccchh------hhcccCcEEEEEEECCChhhHHHHH---HHHHHHHhHCCCCceEEEeecCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFDHVP------IACKDAVAILFMFDLTSRCTLNSIV---GWYSEARKWNQTAIPILIGTKFDDFVR 217 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~------~~~~~ad~iilv~D~~~~~s~~~~~---~~~~~i~~~~~~~~~ilvgnK~DL~~~ 217 (283)
+.+.||||+|+..+..... ..+.+ +++++++|.+...+..+.. .+..... ...+.|.++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~-- 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLL-- 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGC--
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccc--
Confidence 4689999999876533221 24456 8888899876443322222 1111111 12245668999999962
Q ss_pred CCCCcccchHHH---HH----H-----------------HHHHcC--CcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 218 LPPDLQWTIATQ---AR----A-----------------YAKAMK--ATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 218 l~~~~~~~~~~~---~~----~-----------------~~~~~~--~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
.........+. .. . +++.++ ++++++||+++.|+++++++|.+.+.
T Consensus 185 -~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 185 -SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp -CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 11100000110 00 1 123433 47999999999999999999988764
No 203
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.29 E-value=1.4e-11 Score=116.66 Aligned_cols=111 Identities=10% Similarity=0.065 Sum_probs=77.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcC------------------ccccccc---cceeeeeE--EEEEECCeEEEEEEEeC
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGN------------------EQERSLQ---MAGLNLIN--KTLMVQGARIAFSIWDV 154 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~------------------~~~~~~~---t~~~~~~~--~~~~~~~~~~~l~i~Dt 154 (283)
+.-+|+|+|..++|||||. +++.. .+.+..+ ..|+++.. ..+.+++ +.++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~--~~iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD--RVVNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT--EEEEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC--EEEEEEeC
Confidence 3578999999999999999 98521 0111110 11333322 3344444 66889999
Q ss_pred CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
||+..|.......++-+|++|+|+|+...-.-+...-|....+. +.|+|++.||+|.
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr 164 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDR 164 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTS
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccc
Confidence 99999999999999999999999999887555555566444332 4577899999995
No 204
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.2e-10 Score=105.06 Aligned_cols=154 Identities=13% Similarity=0.129 Sum_probs=98.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc----ccchhh---hccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS----FDHVPI---ACKD 170 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~---~~~~ 170 (283)
..+|.++|.||||||||+ ++++.... ..+|.+..+.....+.+++.. +++.||||.... ..+... .++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 368999999999999999 99987765 788877777777788888855 678999996432 222223 3579
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCC---CCCCcccchHHHHHHHHHHcCCcEEEE
Q 023335 171 AVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVR---LPPDLQWTIATQARAYAKAMKATLFFS 244 (283)
Q Consensus 171 ad~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~---l~~~~~~~~~~~~~~~~~~~~~~~~e~ 244 (283)
||++++|+|++++. ........++..+. .+.|++++.||.|...- ..........++.+.+...+.+..-.+
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 99999999999863 33333444554442 35677899999994110 000001122556666666665533333
Q ss_pred cCCCCcCHHHHHH
Q 023335 245 SATHNINVNKIFK 257 (283)
Q Consensus 245 Sa~~~~~v~~lf~ 257 (283)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 2333444555443
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.13 E-value=2.8e-11 Score=109.70 Aligned_cols=86 Identities=14% Similarity=0.202 Sum_probs=52.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc-cccccceeeeeEEEEEECCe---------------EEEEEEEeCCCCCCccc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQMAGLNLINKTLMVQGA---------------RIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 162 (283)
.++|.++|.+|||||||+ ++++..+. ..+|+++.+.....+.+++. ...+++|||+|...+..
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 579999999999999999 99988765 66776666666666666553 23589999999876543
Q ss_pred -------chhhhcccCcEEEEEEECCChhh
Q 023335 163 -------HVPIACKDAVAILFMFDLTSRCT 185 (283)
Q Consensus 163 -------~~~~~~~~ad~iilv~D~~~~~s 185 (283)
....+++++|++++|+|+++.++
T Consensus 102 ~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 102 NGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----CCHHHHHHHTSSSEEEEEEC-----
T ss_pred hhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 34457899999999999986544
No 206
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.11 E-value=2.6e-11 Score=116.98 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=77.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC--ccc------------cccc---cceeeeeEEEEEECCeEEEEEEEeCCCCCCccc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN--EQE------------RSLQ---MAGLNLINKTLMVQGARIAFSIWDVGGDSRSFD 162 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~--~~~------------~~~~---t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~ 162 (283)
.+|+|+|...+|||||. +++.. ... +..+ ..|++.....+.+..+...+++.||||+..|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 46899999999999999 88521 111 0000 113444333333444456789999999999999
Q ss_pred chhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 163 HVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 163 ~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
.....++-+|++|+|+|+...-.-+...-|....+. +.|+|++.||+|.
T Consensus 83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr 131 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQ 131 (638)
T ss_dssp HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCS
T ss_pred HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccc
Confidence 999999999999999999876443443445443333 4567899999995
No 207
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.11 E-value=4.8e-11 Score=116.12 Aligned_cols=155 Identities=17% Similarity=0.113 Sum_probs=90.9
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc--ccccccee-----------------------------------------
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGL----------------------------------------- 133 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~----------------------------------------- 133 (283)
....+|+|+|.+++|||||+ .+++..+. ..-.+|..
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 44579999999999999999 99997762 21111100
Q ss_pred -------eeeEEEEE--ECCeEEEEEEEeCCCCCCc-------------ccchhhhc-ccCcEEEEEEECCChhhHHHHH
Q 023335 134 -------NLINKTLM--VQGARIAFSIWDVGGDSRS-------------FDHVPIAC-KDAVAILFMFDLTSRCTLNSIV 190 (283)
Q Consensus 134 -------~~~~~~~~--~~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~-~~ad~iilv~D~~~~~s~~~~~ 190 (283)
......+. ..+ ...+.++||||-..- ..+...|+ ..+|++++|+|+++..+-.+..
T Consensus 129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 00000111 111 124778999996541 12333444 5889999999998753333322
Q ss_pred HHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHH----cC-CcEEEEcCCCCcCHHHHHHHHHHH
Q 023335 191 GWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKA----MK-ATLFFSSATHNINVNKIFKFIMAK 262 (283)
Q Consensus 191 ~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~----~~-~~~~e~Sa~~~~~v~~lf~~l~~~ 262 (283)
.++..+.. ...|.|+|.||+|+ +..... . . .... .+. .+ .+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDl---v~~~~~-~-~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDL---MDEGTD-A-R-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTS---SCTTCC-S-H-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEeCccc---CCcchh-h-H-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33444432 24566899999997 322211 1 1 1111 011 12 134569999999999999998874
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.09 E-value=4.6e-10 Score=100.18 Aligned_cols=103 Identities=15% Similarity=0.062 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccch
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTI 226 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~ 226 (283)
+.+.|+||+|...-. ......+|.+++++|.+..+..+.+..+..+ .+.+++.||+|+ .+. ....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~-------~~~ivvlNK~Dl---~~~--~~~s 212 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIFE-------LADMIAVNKADD---GDG--ERRA 212 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHHH-------HCSEEEEECCST---TCC--HHHH
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHhc-------cccEEEEEchhc---cCc--hhHH
Confidence 457889999965421 2234789999999998654332222111111 134777799996 111 1111
Q ss_pred HHHHHHHHHH----------cCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 227 ATQARAYAKA----------MKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 227 ~~~~~~~~~~----------~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
....+++... +..+++.+||+++.|++++++.|.+...
T Consensus 213 ~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 213 SAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223333321 1357888999999999999999987653
No 209
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.06 E-value=1.6e-09 Score=105.72 Aligned_cols=112 Identities=17% Similarity=0.150 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCc--------------ccccc---ccceeeeeEE--EEEECC-----eEEEEEEEeC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNE--------------QERSL---QMAGLNLINK--TLMVQG-----ARIAFSIWDV 154 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~--------------~~~~~---~t~~~~~~~~--~~~~~~-----~~~~l~i~Dt 154 (283)
--+|+|+|...+|||||. +++... +.+.. ..-|++.... ++.+.+ ..+.++++||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 468999999999999999 886211 00000 0113333332 333322 3588999999
Q ss_pred CCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 155 GGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 155 ~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
||+-.|.......++-+|++|+|+|+...-.-+...-|.+..+. +.|+|++.||+|.
T Consensus 93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr 149 (709)
T 4fn5_A 93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDR 149 (709)
T ss_dssp CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSS
T ss_pred CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccc
Confidence 99999999999999999999999999876555555556555444 5578999999995
No 210
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.05 E-value=5.7e-11 Score=97.81 Aligned_cols=105 Identities=8% Similarity=0.040 Sum_probs=63.6
Q ss_pred CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhH---C---CCCceEEEeecC-CCCCCCCCCcccch
Q 023335 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKW---N---QTAIPILIGTKF-DDFVRLPPDLQWTI 226 (283)
Q Consensus 154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~---~---~~~~~ilvgnK~-DL~~~l~~~~~~~~ 226 (283)
.+||+.++.+|+.||.++|++|+|+|.+|++-++ .+.-+.++... . .+.|.+|.+||. |+...++
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams------- 180 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP------- 180 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCC-------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCC-------
Confidence 4589999999999999999999999999986544 33333333221 1 234556888995 7522221
Q ss_pred HHHHHHHHH----HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 227 ATQARAYAK----AMKATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 227 ~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
..++.+... ...+.++.|||++|+|+.+-++||.+.+..+
T Consensus 181 ~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 181 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred HHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 122211111 1234466799999999999999999877554
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=1.9e-09 Score=97.72 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=62.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcc-c-cccccceeeeeEEEEEECCeE---------------EEEEEEeCCCCCCc-
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQ-E-RSLQMAGLNLINKTLMVQGAR---------------IAFSIWDVGGDSRS- 160 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~-~-~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~- 160 (283)
..+|.++|.+|||||||+ .+++... . ..+|++..+.....+.+++.. ..+.+||++|....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 579999999999999999 9998776 4 777766666666777776521 35789999995432
Q ss_pred ------ccchhhhcccCcEEEEEEECCC
Q 023335 161 ------FDHVPIACKDAVAILFMFDLTS 182 (283)
Q Consensus 161 ------~~~~~~~~~~ad~iilv~D~~~ 182 (283)
.......++.+|++++|+|+.+
T Consensus 100 s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2223345689999999999864
No 212
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.00 E-value=4.7e-10 Score=101.28 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=77.1
Q ss_pred CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc-ccchHHHHHHHH
Q 023335 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL-QWTIATQARAYA 234 (283)
Q Consensus 156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~-~~~~~~~~~~~~ 234 (283)
.++.|..+...+++.++++++|+|+++.+ ..|..++.++..+.|+++|+||+|| ++... .....+....++
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL---~~~~~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADL---IPKSVKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGG---SCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhc---CCcccCHHHHHHHHHHHH
Confidence 45788899999999999999999999853 5687888887767788999999997 33221 111233344557
Q ss_pred HHcCC---cEEEEcCCCCcCHHHHHHHHHHHH
Q 023335 235 KAMKA---TLFFSSATHNINVNKIFKFIMAKL 263 (283)
Q Consensus 235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i 263 (283)
+..|. .++++||++|.|++++++.+.+..
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 77787 789999999999999999997754
No 213
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.92 E-value=7e-10 Score=95.64 Aligned_cols=105 Identities=8% Similarity=0.037 Sum_probs=67.9
Q ss_pred CCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHH----HHHhH--CCCCceEEEeec-CCCCCCCCCCcccch
Q 023335 154 VGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYS----EARKW--NQTAIPILIGTK-FDDFVRLPPDLQWTI 226 (283)
Q Consensus 154 t~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~----~i~~~--~~~~~~ilvgnK-~DL~~~l~~~~~~~~ 226 (283)
.+||+..+.+|+.||.++|++|+|+|.+|++-++ ...-+. .+... ..+.|.+|.+|| .|+...++
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams------- 265 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMP------- 265 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCC-------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCC-------
Confidence 4688999999999999999999999999987544 222222 22111 235566788997 58532222
Q ss_pred HHHHHHHHH----HcCCcEEEEcCCCCcCHHHHHHHHHHHHhCC
Q 023335 227 ATQARAYAK----AMKATLFFSSATHNINVNKIFKFIMAKLFNL 266 (283)
Q Consensus 227 ~~~~~~~~~----~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~~ 266 (283)
..++.+... .....+..|||.+|+|+.+-++||.+.+..+
T Consensus 266 ~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 266 CFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp HHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred HHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 122211111 1234466799999999999999999988654
No 214
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=1.4e-09 Score=98.21 Aligned_cols=101 Identities=15% Similarity=0.174 Sum_probs=76.3
Q ss_pred CCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc-cchHHHHHHHH
Q 023335 156 GDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ-WTIATQARAYA 234 (283)
Q Consensus 156 G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~-~~~~~~~~~~~ 234 (283)
.++.|..+...++..++++++|+|+++.++ .|..++.++..+.|.++|+||+|| ++.... ....+....++
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DL---l~~~~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADL---LPRSVKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGG---SCTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhc---CCCccCHHHHHHHHHHHH
Confidence 578899999999999999999999999774 566667766667788999999997 333211 12233444556
Q ss_pred HHcCC---cEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 235 KAMKA---TLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 235 ~~~~~---~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
+..|. .++++||++|.|++++++.+.+...
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 67777 6889999999999999999877653
No 215
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.43 E-value=4.1e-07 Score=83.09 Aligned_cols=141 Identities=12% Similarity=0.145 Sum_probs=68.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCcccc-ccc--cceeeeeEEEEEE--CCeEEEEEEEeCCCCCCccc-----------
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQER-SLQ--MAGLNLINKTLMV--QGARIAFSIWDVGGDSRSFD----------- 162 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~~-~~~--t~~~~~~~~~~~~--~~~~~~l~i~Dt~G~~~~~~----------- 162 (283)
.++++|+|.+|+|||||+ .+.+-.+.. ... +.+.......+.. .+....+.++|++|-.....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 367999999999999999 777764431 111 1111111111111 22334688899987532110
Q ss_pred ---chhh----h---------cccCc---EEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcc
Q 023335 163 ---HVPI----A---------CKDAV---AILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQ 223 (283)
Q Consensus 163 ---~~~~----~---------~~~ad---~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~ 223 (283)
.... + ..+++ +++|+.|....-+-.++ .++..+ ....++|+|.||+|. +.+...
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~---Lt~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADA---ISKSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGG---SCHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhc---cchHHH
Confidence 0001 1 12222 45666666543332221 222222 345566899999996 443322
Q ss_pred cchHHHHHHHHHHcCCcEEEEcCC
Q 023335 224 WTIATQARAYAKAMKATLFFSSAT 247 (283)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~e~Sa~ 247 (283)
....+.+.+-....|+++|.+|..
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 222344444344567888887754
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.41 E-value=1.2e-07 Score=88.68 Aligned_cols=148 Identities=16% Similarity=0.119 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh------cCccc--c--cccc------------ceeeeeEEEEE-------------EC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV------GNEQE--R--SLQM------------AGLNLINKTLM-------------VQ 143 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~------~~~~~--~--~~~t------------~~~~~~~~~~~-------------~~ 143 (283)
...|+++|.+||||||++ ++. +.+.. . .+.+ .++++...... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999 887 33221 1 1000 01221110000 00
Q ss_pred CeEEEEEEEeCCCCCCccc-chhh---h--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCC
Q 023335 144 GARIAFSIWDVGGDSRSFD-HVPI---A--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFV 216 (283)
Q Consensus 144 ~~~~~l~i~Dt~G~~~~~~-~~~~---~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~ 216 (283)
...+.+.|+||+|...... +... . +..+|.+++|+|.+...... .....+... .++ ++|.||.|..
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~~---~~i~gvVlNK~D~~- 253 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKDK---VDVASVIVTKLDGH- 253 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHHH---HCCCCEEEECTTSC-
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHhh---cCceEEEEeCCccc-
Confidence 0235688999999764321 1111 1 22789999999998754321 122223221 243 7999999951
Q ss_pred CCCCCcccchHHHHHHHHHHcCCcE------------------EEEcCCCCcC-HHHHHHHHHHH
Q 023335 217 RLPPDLQWTIATQARAYAKAMKATL------------------FFSSATHNIN-VNKIFKFIMAK 262 (283)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-v~~lf~~l~~~ 262 (283)
. ... .+.......+.++ +.+|+..|.| +.++++++.+.
T Consensus 254 ---~--~~g---~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 254 ---A--KGG---GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ---C--CCT---HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ---c--chH---HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1 111 1222333445443 2378999999 99999888765
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.39 E-value=4.2e-07 Score=78.92 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=67.5
Q ss_pred eCCCCC-CcccchhhhcccCcEEEEEEECCChhhHH--HHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHH
Q 023335 153 DVGGDS-RSFDHVPIACKDAVAILFMFDLTSRCTLN--SIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQ 229 (283)
Q Consensus 153 Dt~G~~-~~~~~~~~~~~~ad~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~ 229 (283)
..||+. +........+..+|+++.|+|+.++.+.. .+..|+ .+.+.++|.||+|| .+ . ...+.
T Consensus 5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL---~~---~-~~~~~ 70 (282)
T 1puj_A 5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADK---AD---A-AVTQQ 70 (282)
T ss_dssp ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGG---SC---H-HHHHH
T ss_pred CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECccc---CC---H-HHHHH
Confidence 457765 33444556789999999999999987764 334443 46777999999997 22 1 11233
Q ss_pred HHHHHHHcCCcEEEEcCCCCcCHHHHHHHHHHHHh
Q 023335 230 ARAYAKAMKATLFFSSATHNINVNKIFKFIMAKLF 264 (283)
Q Consensus 230 ~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 264 (283)
..++.+..+.+++++||+++.|++++++.+.+.+.
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 34445556789999999999999999998877664
No 218
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.32 E-value=3.6e-06 Score=76.76 Aligned_cols=161 Identities=12% Similarity=0.097 Sum_probs=86.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccc--cccccceeeee-EEEEEECCeEEEEEEEeCCCCCCcccchhhh-----cccC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLNLI-NKTLMVQGARIAFSIWDVGGDSRSFDHVPIA-----CKDA 171 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~-----~~~a 171 (283)
..++++|++|+|||||+ .+.+-... ......+.+.. ...+.-....-.+.+||++|-.........+ +.+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 37999999999999999 77763221 11111111110 0111111111146789999853211111222 3344
Q ss_pred cEEEEEEECC--ChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCC------CCCCCCcccchHHHHHHHHH----HcC-
Q 023335 172 VAILFMFDLT--SRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDF------VRLPPDLQWTIATQARAYAK----AMK- 238 (283)
Q Consensus 172 d~iilv~D~~--~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~------~~l~~~~~~~~~~~~~~~~~----~~~- 238 (283)
+.+++ +|.. .+.-. .+...+.. ...|.++|.||.|+. ..+....+....+.++++.. +.+
T Consensus 150 ~~~~~-lS~G~~~kqrv----~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~ 222 (413)
T 1tq4_A 150 DFFII-ISATRFKKNDI----DIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGI 222 (413)
T ss_dssp SEEEE-EESSCCCHHHH----HHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCeEE-eCCCCccHHHH----HHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 55555 7765 32211 12222222 134668999999962 12333334444555555542 322
Q ss_pred --CcEEEEcC--CCCcCHHHHHHHHHHHHhCCcc
Q 023335 239 --ATLFFSSA--THNINVNKIFKFIMAKLFNLPW 268 (283)
Q Consensus 239 --~~~~e~Sa--~~~~~v~~lf~~l~~~i~~~~~ 268 (283)
...+.+|+ ..+.|++++.+.+.+.+.+.++
T Consensus 223 ~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~ 256 (413)
T 1tq4_A 223 AEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR 256 (413)
T ss_dssp SSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred CCCcEEEEecCcCCccCHHHHHHHHHHhCccchh
Confidence 35788999 6667899999999988866653
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.22 E-value=1.8e-06 Score=74.46 Aligned_cols=137 Identities=13% Similarity=0.146 Sum_probs=70.0
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcCccc--cccccceee----eeEEEEEE--C--CeEEEEEEEeCCCCCCcc-------
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGNEQE--RSLQMAGLN----LINKTLMV--Q--GARIAFSIWDVGGDSRSF------- 161 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~~~~--~~~~t~~~~----~~~~~~~~--~--~~~~~l~i~Dt~G~~~~~------- 161 (283)
.++++++|++|+|||||+ .+.+-... ....-.|.+ .....+.+ . +....+.++|+.|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 579999999999999999 77653322 100000000 00011111 1 222367889998732210
Q ss_pred cc---------------------hhhhcccCcEEEEEEECCC-hhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCC
Q 023335 162 DH---------------------VPIACKDAVAILFMFDLTS-RCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLP 219 (283)
Q Consensus 162 ~~---------------------~~~~~~~ad~iilv~D~~~-~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~ 219 (283)
.+ .+..+..+++.+++.|-.. .-+-.+ ...+..+.. ..++|+|.||+|. +.
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~---~~~vI~Vi~K~D~---lt 154 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK---VVNIIPVIAKADT---MT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT---TSEEEEEETTGGG---SC
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh---cCcEEEEEecccc---CC
Confidence 00 0112234688888888542 211112 233444433 3566899999996 44
Q ss_pred CCcccchHHHHHHHHHHcCCcEEE
Q 023335 220 PDLQWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~e 243 (283)
........+.+++..+.+++.+|.
T Consensus 155 ~~e~~~~k~~i~~~l~~~~i~i~~ 178 (270)
T 3sop_A 155 LEEKSEFKQRVRKELEVNGIEFYP 178 (270)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHcCccccC
Confidence 333223345555566677777664
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.21 E-value=2e-07 Score=84.06 Aligned_cols=137 Identities=9% Similarity=0.089 Sum_probs=76.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC------ccc-cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc--------h
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN------EQE-RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH--------V 164 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~------~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~ 164 (283)
.+|+++|.+|||||||+ .+++. ... ...+.+. .....+.++.. +.++||||-.....+ .
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT--LDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS--CEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeE--EeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999 98875 222 3344222 22233444432 688999996432211 1
Q ss_pred hhhc--ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEE
Q 023335 165 PIAC--KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLF 242 (283)
Q Consensus 165 ~~~~--~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
..++ +..+.++++.+....--+..+.. ++.+. ..+.+.+++.||.|. -...........+.+..|....
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~------~~~~~~~~~~~~~~~~~g~~l~ 308 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELT------VHRTKLEKADSLYANQLGELLS 308 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEGGGHHHHHHHHBTTTBC
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcc------cccccHHHHHHHHHHhcCCccC
Confidence 1122 67789999998743211111100 11111 123345799999995 2233334555566677776655
Q ss_pred EEcCCCCcC
Q 023335 243 FSSATHNIN 251 (283)
Q Consensus 243 e~Sa~~~~~ 251 (283)
..++...++
T Consensus 309 p~~~~~~~~ 317 (369)
T 3ec1_A 309 PPSKRYAAE 317 (369)
T ss_dssp SSCGGGTTT
T ss_pred CCCchhhhh
Confidence 555554433
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.10 E-value=1e-06 Score=75.59 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=35.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSR 159 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 159 (283)
++++++|.+|||||||+ ++.+.......++.|.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 79999999999999999 999877643223333333223333332 478999999654
No 222
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.05 E-value=3.5e-07 Score=82.44 Aligned_cols=132 Identities=10% Similarity=0.101 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc------cc--cccccceeeeeEEEEEECCeEEEEEEEeCCCCCCcccc----hh--
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE------QE--RSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDH----VP-- 165 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~------~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~-- 165 (283)
.+|+++|.+|||||||+ ++++.. .. ...+ |.+.....+.++.. +.++||||-.....+ ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~--gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFP--GTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCC--CeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 57999999999999999 988752 11 2333 22222333444432 688999996432211 11
Q ss_pred --hh--cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcE
Q 023335 166 --IA--CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATL 241 (283)
Q Consensus 166 --~~--~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~ 241 (283)
.+ .+..+.+++++|.....-+..+.. ++.+. ....|.+++.||.|. -...........+.+..|...
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~------~~~~~~~~~~~~~~~~~g~~l 306 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLT------IHRTKLEKADELYKNHAGDLL 306 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSC------EEEEEHHHHHHHHHHHBTTTB
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccc------cccccHHHHHHHHHHHhCCcc
Confidence 11 256778888887632211111100 00111 123345799999995 223344555566667777654
Q ss_pred EEEcC
Q 023335 242 FFSSA 246 (283)
Q Consensus 242 ~e~Sa 246 (283)
...++
T Consensus 307 ~p~~~ 311 (368)
T 3h2y_A 307 SPPTP 311 (368)
T ss_dssp CSSCH
T ss_pred CCCch
Confidence 44443
No 223
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=7.8e-08 Score=89.48 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhcCccccccccceeeeeEEEEEECCeEEEEEEEeCCCCCCc--ccch--------hhh
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVGNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRS--FDHV--------PIA 167 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--~~~~--------~~~ 167 (283)
..++|+++|.+|+||||+. ++...-.....++.+++.........+......+||..|++.+ ...+ ..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999 8765432222333322211100011122233467999887332 2222 456
Q ss_pred cccCcEEEEEEECCChhhHHHHHHHHHHHHhHC
Q 023335 168 CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN 200 (283)
Q Consensus 168 ~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~ 200 (283)
+..+.+.++|+|.++. +++....|++.+++..
T Consensus 118 l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~~ 149 (469)
T 1bif_A 118 LSEEGGHVAVFDATNT-TRERRAMIFNFGEQNG 149 (469)
T ss_dssp HHTTCCSEEEEESCCC-SHHHHHHHHHHHHHHT
T ss_pred HHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhcC
Confidence 6678899999999988 5677778888777653
No 224
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.97 E-value=4.9e-06 Score=72.15 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=31.2
Q ss_pred ChhhHHHHhhhhhHhhhhhheeeccccccchhHHHHHHH
Q 023335 1 MAKIIHEATENMTQLCRRVVHVNIRRSLFDRVSIFRRFF 39 (283)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (283)
|+++.+|+.+.+.+.+..+..+|.|.-...|...+.+++
T Consensus 10 m~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l 48 (282)
T 1puj_A 10 MAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL 48 (282)
T ss_dssp TTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC
T ss_pred HHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH
Confidence 788889999999999999999999988777754454443
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.90 E-value=2.1e-05 Score=72.18 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
+.+.|+||+|...... +.. .....+|.+++|.|.+....-.+ ....+... -.+..+|.||.|.
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~--~~i~gVIlTKlD~------ 251 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA--TPIGSIIVTKLDG------ 251 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS--CTTEEEEEECCSS------
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh--CCCeEEEEECCCC------
Confidence 5678899999654321 111 11235789999999876433222 22222221 2233699999994
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHH
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSSATHNINVNK 254 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 254 (283)
... ...+.......+.++.+++. |+++++
T Consensus 252 ~~~---gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 252 SAK---GGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp CSS---HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred ccc---ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 111 23445556677888888775 665544
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.83 E-value=1e-05 Score=69.31 Aligned_cols=90 Identities=8% Similarity=0.021 Sum_probs=59.8
Q ss_pred CCCCC-cccchhhhcccCcEEEEEEECCChhhHHH--HHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHH
Q 023335 155 GGDSR-SFDHVPIACKDAVAILFMFDLTSRCTLNS--IVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQAR 231 (283)
Q Consensus 155 ~G~~~-~~~~~~~~~~~ad~iilv~D~~~~~s~~~--~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~ 231 (283)
||+.. ........+.++|+++.|+|+.++.+..+ +. |+ +.++++|.||+|| .+. ...+...
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll--------~k~~iivlNK~DL---~~~----~~~~~~~ 68 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS--------RKETIILLNKVDI---ADE----KTTKKWV 68 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT--------TSEEEEEEECGGG---SCH----HHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc--------CCCcEEEEECccC---CCH----HHHHHHH
Confidence 55543 22345567789999999999998866543 22 22 5677999999997 221 1122334
Q ss_pred HHHHHcCCcEEEEcCCCCcCHHHHHHHHHH
Q 023335 232 AYAKAMKATLFFSSATHNINVNKIFKFIMA 261 (283)
Q Consensus 232 ~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~ 261 (283)
++.+..+.++ .+||+++.|++++++.+..
T Consensus 69 ~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 69 EFFKKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4555567888 9999999999998877644
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.70 E-value=2.8e-05 Score=68.09 Aligned_cols=93 Identities=9% Similarity=0.059 Sum_probs=61.1
Q ss_pred ccchhhhcccCcEEEEEEECCChhh-HHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCC
Q 023335 161 FDHVPIACKDAVAILFMFDLTSRCT-LNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKA 239 (283)
Q Consensus 161 ~~~~~~~~~~ad~iilv~D~~~~~s-~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~ 239 (283)
..+.+..+.++|.+++|+|+.++.. ...+.+++.... ..+.+|+||.||+|| .++.......+...++.+..|.
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL---~~~~~~~~~~~~~~~~y~~~g~ 151 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDL---IEDQDTEDTIQAYAEDYRNIGY 151 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGG---CCCHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCcc---CchhhhHHHHHHHHHHHHhCCC
Confidence 3455567899999999999987653 444445554333 346788999999997 2221100112334444455688
Q ss_pred cEEEEcCCCCcCHHHHHHH
Q 023335 240 TLFFSSATHNINVNKIFKF 258 (283)
Q Consensus 240 ~~~e~Sa~~~~~v~~lf~~ 258 (283)
+.+.+||.++.|+++++..
T Consensus 152 ~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 152 DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CEEECCHHHHTTCTTTGGG
T ss_pred eEEEEecCCCCCHHHHHhh
Confidence 9999999999888776643
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.63 E-value=4.9e-05 Score=69.71 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCC-c-eEEEeecCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTA-I-PILIGTKFDDFVRL 218 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~-~-~ilvgnK~DL~~~l 218 (283)
+.+.|+||+|...... +.. ..+..+|.+++|.|.+.... .... ++.+.... + ..+|.||.|.
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~---~~~~~~~~~~i~gvVlnK~D~---- 250 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQ---AKAFKEAVGEIGSIIVTKLDG---- 250 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHH---HHHHHTTSCSCEEEEEECSSS----
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHH---HHHHhhcccCCeEEEEeCCCC----
Confidence 4578899999764311 111 11236899999999865432 2222 22233333 4 4699999994
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
.. . ...+..+....+.++.+++
T Consensus 251 ~~--~---~g~~l~~~~~~~~pi~~ig 272 (432)
T 2v3c_C 251 SA--K---GGGALSAVAETKAPIKFIG 272 (432)
T ss_dssp CS--T---THHHHHHHHHSSCCEEEEC
T ss_pred cc--c---hHHHHHHHHHHCCCEEEee
Confidence 11 1 1223446667777766653
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.62 E-value=6.4e-05 Score=65.54 Aligned_cols=93 Identities=15% Similarity=0.136 Sum_probs=55.8
Q ss_pred EEEEEEEeCCCCCC--ccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCc-eEEEeecCCCCC
Q 023335 146 RIAFSIWDVGGDSR--SFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAI-PILIGTKFDDFV 216 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~--~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~-~ilvgnK~DL~~ 216 (283)
.+.+.++||+|... ... +.. .....+|.+++|.|.+... +.......+.. ..+ ..+|.||.|.
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~---~~~i~gvVlnk~D~-- 251 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ---ASKIGTIIITKMDG-- 251 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH---TCTTEEEEEECGGG--
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh---hCCCCEEEEeCCCC--
Confidence 35678999999776 211 111 1245789999999986432 22222222322 334 3589999994
Q ss_pred CCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 217 RLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
. .....+..++...+.++.+++ +|++++++
T Consensus 252 --~-----~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 252 --T-----AKGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp --C-----TTHHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred --C-----cchHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 1 113345567778888888876 56666553
No 230
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.52 E-value=7.9e-05 Score=68.24 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=52.0
Q ss_pred EEEEEEeCCCCCC--cc-cchhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCC
Q 023335 147 IAFSIWDVGGDSR--SF-DHVPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRL 218 (283)
Q Consensus 147 ~~l~i~Dt~G~~~--~~-~~~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l 218 (283)
+.+.|.||+|... .. .+... .....+.+++|.|.+......+ ....+... -.+-.||.||.|.
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~--~~~~gVIlTKlD~---- 250 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA--SPIGSVIITKMDG---- 250 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH--CSSEEEEEECGGG----
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc--cCCcEEEEecccc----
Confidence 4577899999644 11 11111 1124689999999876433222 22333321 1244799999994
Q ss_pred CCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCH
Q 023335 219 PPDLQWTIATQARAYAKAMKATLFFSSATHNINV 252 (283)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 252 (283)
.. ....+.......+.|+.+++. |+++
T Consensus 251 --~a---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 251 --TA---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp --CS---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred --cc---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 11 133455566667999888776 5554
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.31 E-value=0.00014 Score=69.00 Aligned_cols=60 Identities=13% Similarity=0.198 Sum_probs=37.1
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcCccc-cccc-----cceeeeeEEEEEE-CCeEEEEEEEeCCCCCC
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGNEQE-RSLQ-----MAGLNLINKTLMV-QGARIAFSIWDVGGDSR 159 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~~~~-~~~~-----t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~ 159 (283)
....+|+|+|.+|||||||+ ++++.... .... |.|.... ...+ ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~--~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW--CVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE--EEECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEe--ecccccCCCceEEEecCCCcCc
Confidence 34688999999999999999 99887632 1111 2222111 1111 11224577899999653
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.30 E-value=0.0011 Score=59.12 Aligned_cols=86 Identities=10% Similarity=0.140 Sum_probs=55.0
Q ss_pred hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 167 ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 167 ~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
...++|.+++|.+..-.-+...+..++-..... +.+|+||.||+|| .++. .....++.....+..|.+.+.+||
T Consensus 127 i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL---~~~~-~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 127 IAANIDQIVIVSAILPELSLNIIDRYLVGCETL--QVEPLIVLNKIDL---LDDE-GMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH--TCEEEEEEECGGG---CCHH-HHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc--CCCEEEEEECccC---CCch-hHHHHHHHHHHHHhCCCcEEEEec
Confidence 468999999887654223444555665444332 5678999999997 2221 100012222333456889999999
Q ss_pred CCCcCHHHHHHH
Q 023335 247 THNINVNKIFKF 258 (283)
Q Consensus 247 ~~~~~v~~lf~~ 258 (283)
.++.|++++...
T Consensus 201 ~~~~gl~~L~~~ 212 (358)
T 2rcn_A 201 HTQDGLKPLEEA 212 (358)
T ss_dssp TTTBTHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 999999988764
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.20 E-value=0.00017 Score=63.78 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=52.3
Q ss_pred EEEEeCCCCCCcccc-hhh-----hcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCc
Q 023335 149 FSIWDVGGDSRSFDH-VPI-----ACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDL 222 (283)
Q Consensus 149 l~i~Dt~G~~~~~~~-~~~-----~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~ 222 (283)
+.+.|++|....... ... -.-..|-.+++.|.+... ++......+.+. ...-+|+.||.|. ..
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~------~a 282 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDA------DA 282 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGG------CS
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCC------cc
Confidence 456899997543221 111 012468889999976543 333333333321 2344899999993 11
Q ss_pred ccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 223 QWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
. ...+...+...+.++.+++ +|++++++
T Consensus 283 ~---~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 283 R---GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp C---CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred c---hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 1 2335566677789888877 66666543
No 234
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.72 E-value=0.0025 Score=51.54 Aligned_cols=84 Identities=13% Similarity=0.004 Sum_probs=53.4
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC---CCCceEEEeecCCCCCCCCCCcc
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN---QTAIPILIGTKFDDFVRLPPDLQ 223 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~ilvgnK~DL~~~l~~~~~ 223 (283)
+.+.++|+++.. .......+..+|.+|++...+... ..+..+++.++... +..+..+|.|+.|- . .
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~------~-~ 144 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIE------M-A 144 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT------T-E
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC------C-c
Confidence 567889999865 344556678899999999876444 66666666666543 23333699999993 1 1
Q ss_pred cchHHHHHHHHHHcCCcEE
Q 023335 224 WTIATQARAYAKAMKATLF 242 (283)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (283)
....+..++.+.++.+++
T Consensus 145 -~~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 145 -TMLNVLKESIKDTGVKAF 162 (206)
T ss_dssp -EEEHHHHHHHHHHTCCBC
T ss_pred -hHHHHHHHHHHHcCCcee
Confidence 122344555555665544
No 235
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.57 E-value=0.0022 Score=52.59 Aligned_cols=85 Identities=9% Similarity=0.008 Sum_probs=53.5
Q ss_pred EEEEEEeCCCC-CCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCCCcccc
Q 023335 147 IAFSIWDVGGD-SRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 147 ~~l~i~Dt~G~-~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~~~~~~ 225 (283)
+.+.++|+++. .. ......+..+|.+|++...+ ..++..+...++.+.... ..+..+|.|+.|- . ...
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~----~---~~~ 136 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPP----Y---PSK 136 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCC----T---TSC
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCC----c---cch
Confidence 56788999986 43 23455678899999998764 556666667777776643 3345699999993 1 101
Q ss_pred hHHHHHHHHHHcCCcEE
Q 023335 226 IATQARAYAKAMKATLF 242 (283)
Q Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (283)
...+..+..++++.+++
T Consensus 137 ~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 137 DGDEARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHHHHHTTCCBC
T ss_pred HHHHHHHHHHHcCCchh
Confidence 23444555555665443
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.37 E-value=0.0039 Score=57.10 Aligned_cols=63 Identities=16% Similarity=0.066 Sum_probs=36.4
Q ss_pred EEEEEEEeCCCCCCccc-chh-----hhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCC
Q 023335 146 RIAFSIWDVGGDSRSFD-HVP-----IACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDD 214 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~-~~~-----~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL 214 (283)
.+.+.|+||+|...... +.. ..+..++.+++|+|.+..... ......+.. ..++ -+|.||.|.
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~---~l~i~gvVlnK~D~ 252 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE---ALPLTGVVLTKVDG 252 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH---HSCCCCEEEECTTS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc---cCCCeEEEEecCCC
Confidence 35678899999655422 111 123468899999998754322 222222222 2233 489999994
No 237
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.36 E-value=0.022 Score=49.25 Aligned_cols=84 Identities=8% Similarity=0.014 Sum_probs=53.5
Q ss_pred EEEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHC--CCCceE-EEeecCCCCCCCCCCc
Q 023335 146 RIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWN--QTAIPI-LIGTKFDDFVRLPPDL 222 (283)
Q Consensus 146 ~~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~~~i-lvgnK~DL~~~l~~~~ 222 (283)
.+.+.|+|+++.-... .....+..+|.+|+|... +..++..+..+++.+.... .+...+ +|.|+.+-
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~-------- 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA-------- 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC--------
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc--------
Confidence 3567889998754322 223456789999999865 4566777777777776642 233334 89999982
Q ss_pred ccchHHHHHHHHHHcCCcEEE
Q 023335 223 QWTIATQARAYAKAMKATLFF 243 (283)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~e 243 (283)
.+..+++.+.++.+++.
T Consensus 226 ----~~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 226 ----TDEVDRFCKETNFRRLA 242 (307)
T ss_dssp ----CHHHHHHHHHHTCCEEE
T ss_pred ----HHHHHHHHHHcCCCcee
Confidence 12355566666766543
No 238
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.17 E-value=0.0031 Score=60.33 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.|+|+|++|+|||||+ .+.+-
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC
T ss_pred eEEEECCCCChHHHHHHHHhCC
Confidence 3999999999999999 77664
No 239
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.06 E-value=0.0043 Score=56.92 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=38.7
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hhhcC------------------ccc-c--cc-ccceeeeeEEEE--EE-CCeEEEEEE
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KYVGN------------------EQE-R--SL-QMAGLNLINKTL--MV-QGARIAFSI 151 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~~~~------------------~~~-~--~~-~t~~~~~~~~~~--~~-~~~~~~l~i 151 (283)
.+..-|.|+|.+++|||+|+ .+++. .|. . .. .|.|+-.....+ .. ++....+.+
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 34556789999999999999 88753 232 1 11 133443222111 11 455788999
Q ss_pred EeCCCCCC
Q 023335 152 WDVGGDSR 159 (283)
Q Consensus 152 ~Dt~G~~~ 159 (283)
.||+|...
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999754
No 240
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.86 E-value=0.0037 Score=49.99 Aligned_cols=20 Identities=45% Similarity=0.659 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+++++|++|+|||||+ .+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999 6554
No 241
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.57 E-value=0.0051 Score=48.95 Aligned_cols=20 Identities=20% Similarity=0.456 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|+|++|||||||+ .+.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999 7765
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.39 E-value=0.0064 Score=49.28 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|++|+|||||+ .+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999 6654
No 243
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.20 E-value=0.0088 Score=47.22 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|++|+|||||+ .+..
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 4789999999999999 6543
No 244
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.15 E-value=0.0088 Score=47.66 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.|+++|.+|+|||||+ .+.+.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5889999999999999 76553
No 245
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.09 E-value=0.0099 Score=47.91 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=17.9
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
|+|+|++|||||||+ +++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999 88754
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.08 E-value=0.01 Score=48.26 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=19.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.--|+|+|++|||||||+ .+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 346889999999999999 87653
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.08 E-value=0.009 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|++|||||||+ .+.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 4889999999999999 6654
No 248
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.07 E-value=0.0089 Score=47.77 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=16.8
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++|+|++|+|||||+ .+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 689999999999999 7664
No 249
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.91 E-value=0.011 Score=48.94 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|+|++|||||||+ .+.+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5789999999999999 76653
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.86 E-value=0.011 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-|+|+|++|||||||+ .+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999 77654
No 251
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.84 E-value=0.011 Score=48.01 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|+|++|+|||||+ .+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999 6654
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.79 E-value=0.012 Score=48.50 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|++|+|||||+ .+.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999 6655
No 253
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.70 E-value=0.013 Score=47.65 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|.|+|++|+|||||+ .+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999 5543
No 254
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.54 E-value=0.017 Score=44.89 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHhH-hh
Q 023335 102 KISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~ 119 (283)
-|+|.|.+||||||+. .+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999 77
No 255
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.52 E-value=0.016 Score=45.04 Aligned_cols=20 Identities=25% Similarity=0.049 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|.|.+||||||+. .+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7643
No 256
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.51 E-value=0.017 Score=46.83 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|+|+|.+|||||||+ .+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 7754
No 257
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.49 E-value=0.017 Score=45.25 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|+|.|.+|+||||+. .+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 45899999999999999 7765
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.46 E-value=0.016 Score=45.24 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++++|+.|+|||||+ .+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999 66553
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.41 E-value=0.016 Score=46.76 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+++++|++|+|||||+ .+.+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 5789999999999999 6654
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.38 E-value=0.017 Score=46.50 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
..|+|+|.+|+||||++ .+.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999 66543
No 261
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.36 E-value=0.02 Score=46.62 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
++|+|.|.+||||||+. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999 764
No 262
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.36 E-value=0.018 Score=45.00 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|+|+|.+|+||||+. .+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 5543
No 263
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.34 E-value=0.02 Score=46.63 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
++|+|.|.+||||||+. .+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 37999999999999999 764
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.34 E-value=0.018 Score=45.90 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|.+|+|||||+ .+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999 6653
No 265
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=94.30 E-value=0.048 Score=49.93 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=39.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh------------------cCccc---cccc-cceeeeeEEEEEE---CCeEEEEEEEe
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV------------------GNEQE---RSLQ-MAGLNLINKTLMV---QGARIAFSIWD 153 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~------------------~~~~~---~~~~-t~~~~~~~~~~~~---~~~~~~l~i~D 153 (283)
-.=|.|+|..++|||+|+ .++ ...|. ...+ |.|+-.....+.+ ++..+.+.+.|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 344569999999999999 775 13343 1122 6676554433222 56788899999
Q ss_pred CCCCCC
Q 023335 154 VGGDSR 159 (283)
Q Consensus 154 t~G~~~ 159 (283)
|.|...
T Consensus 147 TEG~~d 152 (457)
T 4ido_A 147 TQGTFD 152 (457)
T ss_dssp ECCBTC
T ss_pred ccCCCC
Confidence 999543
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.30 E-value=0.02 Score=47.79 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999 5543
No 267
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.25 E-value=0.022 Score=47.49 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|+|.+|+|||||+ .+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 766
No 268
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.20 E-value=0.02 Score=46.21 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.|+|+|.+|+|||||+ .+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999 6643
No 269
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.15 E-value=0.024 Score=44.86 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|+|.|.+||||||+. .+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 6643
No 270
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.15 E-value=0.022 Score=46.59 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+.|+++|+|||||+|.. ++..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999 6653
No 271
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.15 E-value=0.017 Score=45.64 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.++++|++|+|||+|+ .+.+
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999 6654
No 272
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.13 E-value=0.023 Score=45.53 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|.|.+||||||+. .+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 6899999999999999 6643
No 273
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.09 E-value=0.028 Score=45.26 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+|.|.+|+||||+. .+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999 6643
No 274
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.09 E-value=0.024 Score=45.72 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.|+++|.+||||||+. .+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999999 664
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.06 E-value=0.022 Score=45.95 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|+|+|.+|+||||+. .+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 7643
No 276
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.06 E-value=0.023 Score=47.04 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999 5543
No 277
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.03 E-value=0.027 Score=44.63 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|.|.+||||||+. .+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6643
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.03 Score=44.43 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|+|.|.+||||||+. .+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999 664
No 279
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.97 E-value=0.025 Score=46.88 Aligned_cols=19 Identities=32% Similarity=0.684 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-++++|++|+|||||+ .++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 4789999999999999 776
No 280
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.96 E-value=0.026 Score=44.29 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|++.|.+|+||||+. .+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 6654
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.93 E-value=0.025 Score=44.99 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++++|.+|+|||||+ +++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999 88753
No 282
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.93 E-value=0.026 Score=47.26 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 5544
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.92 E-value=0.027 Score=47.85 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|+|+.|+|||||+ .+.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 3679999999999999 5544
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.87 E-value=0.026 Score=50.17 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCcc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNEQ 124 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~~ 124 (283)
.++++|.+|||||||+ .+.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999 8876543
No 285
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.86 E-value=0.028 Score=46.20 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 3679999999999999 5544
No 286
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.85 E-value=0.042 Score=44.07 Aligned_cols=19 Identities=21% Similarity=0.209 Sum_probs=17.2
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+++.|++|+|||+|+ .+..
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 7754
No 287
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=93.85 E-value=0.042 Score=48.83 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.0
Q ss_pred CCCCceeeEEEEEcCCCCcHHHhH-hh
Q 023335 94 TDSDLVSLKISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 94 ~~~~~~~~KI~vlG~~~vGKSSLi-~~ 119 (283)
+.......||+++|.+++|||||+ ++
T Consensus 3 ~~~~~~~~k~lllG~~~sGKsT~~kq~ 29 (354)
T 2xtz_A 3 MGSGIHIRKLLLLGAGESGKSTIFKQI 29 (354)
T ss_dssp CCCCCEEEEEEEECSTTSSHHHHHHHH
T ss_pred ccCCCCceeEEEECCCCCcHHHHHHHH
Confidence 344567899999999999999999 65
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.85 E-value=0.033 Score=43.66 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.|+++|.+|+||||+. .+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~ 29 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVA 29 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 46899999999999999 654
No 289
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.84 E-value=0.035 Score=43.86 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=18.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|+++|.+||||||+. .+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 457999999999999999 665
No 290
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.83 E-value=0.031 Score=46.71 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999 5544
No 291
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.81 E-value=0.024 Score=46.34 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|+|++|+|||||+ .+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999 7765
No 292
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.80 E-value=0.032 Score=46.77 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999 5544
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.80 E-value=0.034 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+|.|.+||||||+. .+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999 6643
No 294
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.79 E-value=0.029 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.630 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 3679999999999999 5544
No 295
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.77 E-value=0.11 Score=39.51 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.6
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|++.|++|+|||++. .+.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGC
T ss_pred cEEEECCCCccHHHHHHHHH
Confidence 4999999999999999 544
No 296
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.76 E-value=0.032 Score=46.93 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999 5544
No 297
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.74 E-value=0.028 Score=45.28 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+|+|+|.+|+||||+. .+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 37999999999999999 6654
No 298
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.70 E-value=0.03 Score=47.33 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 5544
No 299
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.66 E-value=0.029 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|.|+|..|+|||||+ .+.+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999 6544
No 300
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.65 E-value=0.031 Score=45.56 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
++|+|.|.+||||||+. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 37999999999999999 6643
No 301
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.64 E-value=0.03 Score=43.86 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+++.|++|+|||+|+ .+...
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999 77553
No 302
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.64 E-value=0.035 Score=46.03 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999 5544
No 303
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.64 E-value=0.032 Score=47.49 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.++|+.|+|||||+ .+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 3679999999999999 5544
No 304
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.63 E-value=0.034 Score=43.91 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+++|.+||||||+. .+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999 764
No 305
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.62 E-value=0.032 Score=47.38 Aligned_cols=20 Identities=20% Similarity=0.341 Sum_probs=16.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHHHHc
Confidence 3679999999999999 5544
No 306
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.60 E-value=0.036 Score=43.99 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|++.|.+|+||||+. .+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999 6643
No 307
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=93.60 E-value=0.035 Score=49.49 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.6
Q ss_pred ceeeEEEEEcCCCCcHHHhH-hh
Q 023335 98 LVSLKISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 98 ~~~~KI~vlG~~~vGKSSLi-~~ 119 (283)
....||+++|.+++|||||+ ++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHH
Confidence 45789999999999999999 64
No 308
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.58 E-value=0.023 Score=46.89 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=13.2
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-++|+|++|+|||||+ .+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999 776
No 309
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.57 E-value=0.03 Score=45.12 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--|+|+|.+|+|||||. .+.+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999 5543
No 310
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.57 E-value=0.033 Score=46.57 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 5544
No 311
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.53 E-value=0.027 Score=46.15 Aligned_cols=21 Identities=24% Similarity=0.143 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.++++|+.|+|||||+ .+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999 66553
No 312
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.51 E-value=0.035 Score=46.78 Aligned_cols=20 Identities=25% Similarity=0.574 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999 5544
No 313
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.51 E-value=0.03 Score=47.51 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 6899999999999999 6654
No 314
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.51 E-value=0.035 Score=46.98 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999 5544
No 315
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.48 E-value=0.018 Score=45.62 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.|+|.+|+|||||+ .+.+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999 6654
No 316
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.46 E-value=0.038 Score=46.81 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999 5544
No 317
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.46 E-value=0.13 Score=39.07 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|++.|++|+|||++. .+..
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999 5544
No 318
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.45 E-value=0.04 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|.|.+||||||+. .+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 568999999999999999 7753
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.44 E-value=0.035 Score=47.34 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 4679999999999999 5544
No 320
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.43 E-value=0.033 Score=48.39 Aligned_cols=19 Identities=16% Similarity=0.420 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.++|+|++|+|||||+ .+.
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~ 147 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLI 147 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 6899999999999999 554
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.41 E-value=0.036 Score=45.32 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+|.|+|.+|+||||+. .+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999999 5543
No 322
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.40 E-value=0.036 Score=46.66 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 6555
No 323
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.37 E-value=0.041 Score=47.18 Aligned_cols=20 Identities=30% Similarity=0.275 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 4779999999999999 5544
No 324
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.33 E-value=0.033 Score=49.52 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-+++|+|.+|+|||||+ .+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999 5544
No 325
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.33 E-value=0.042 Score=46.06 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=19.1
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..+.|.|.|.+|+||||+. .+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999 6643
No 326
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.33 E-value=0.038 Score=47.02 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 6555
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.32 E-value=0.04 Score=44.99 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|+|+|.+||||||+. .+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 664
No 328
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.31 E-value=0.044 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+++|.+|+||||+. .+..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 6654
No 329
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=93.27 E-value=0.037 Score=47.86 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcCc
Q 023335 102 KISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
.++++|++|||||||+ .+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 5789999999999999 776543
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.25 E-value=0.056 Score=43.40 Aligned_cols=20 Identities=35% Similarity=0.321 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|.|.+||||||+. .+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 765
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.24 E-value=0.04 Score=46.50 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 4779999999999999 5544
No 332
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.23 E-value=0.04 Score=45.31 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|+|.+||||||+. .+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 764
No 333
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.22 E-value=0.048 Score=43.96 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+.|.++|.+|+||||+. .+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 6654
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.21 E-value=0.045 Score=42.40 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+|+|.|.+|+||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 6999999999999999 6643
No 335
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.20 E-value=0.039 Score=43.32 Aligned_cols=19 Identities=21% Similarity=0.380 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
+|+|+|.+|+||||+. .+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA 25 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 6999999999999999 654
No 336
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.18 E-value=0.045 Score=43.10 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|++.|.+|+||||+. .+.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999999 665
No 337
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.18 E-value=0.041 Score=46.76 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 4779999999999999 5544
No 338
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.14 E-value=0.044 Score=43.35 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-+.++|.+|+|||||+ +++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999 8765
No 339
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.10 E-value=0.038 Score=48.02 Aligned_cols=83 Identities=11% Similarity=0.104 Sum_probs=45.0
Q ss_pred EEEEeCCCCCCccc-c-----------hhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCC
Q 023335 149 FSIWDVGGDSRSFD-H-----------VPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFV 216 (283)
Q Consensus 149 l~i~Dt~G~~~~~~-~-----------~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~ 216 (283)
+.+.||+|...... + .+......+.++++.|.+.... +...+..+.+. ....+|+.||.|-
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~--~~~t~iivTh~d~-- 259 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEA--VGLTGVIVTKLDG-- 259 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHH--HCCSEEEEECTTS--
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHH--cCCcEEEEECCcc--
Confidence 45789998643221 0 1112345677888999776542 22223333221 1345899999983
Q ss_pred CCCCCcccchHHHHHHHHHHcCCcEEEEc
Q 023335 217 RLPPDLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
... -..+.......+.++.+++
T Consensus 260 ----~a~---gg~~l~i~~~~~~pi~~ig 281 (304)
T 1rj9_A 260 ----TAK---GGVLIPIVRTLKVPIKFVG 281 (304)
T ss_dssp ----SCC---CTTHHHHHHHHCCCEEEEE
T ss_pred ----ccc---ccHHHHHHHHHCCCeEEEe
Confidence 111 1123455566788877765
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.09 E-value=0.049 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.178 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|+|.|.+||||||+. .+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999 7753
No 341
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.09 E-value=0.048 Score=46.31 Aligned_cols=20 Identities=35% Similarity=0.579 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999 5544
No 342
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.07 E-value=0.032 Score=43.00 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--++++|++|+|||+|+ .+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999 6654
No 343
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.04 E-value=0.019 Score=49.98 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
-.++++|.+|||||||+ .+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 37899999999999999 776543
No 344
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.03 E-value=0.04 Score=44.87 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|++|+|||||+ .+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999 8764
No 345
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.02 E-value=0.048 Score=44.82 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|+|.|.+||||||+. .+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 6899999999999999 664
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.00 E-value=0.04 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..-|.|+|++|+|||||+ .+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHh
Confidence 467889999999999999 5543
No 347
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.97 E-value=0.061 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|.|.+||||||+. .+.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 664
No 348
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.93 E-value=0.052 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+|.|.+||||||+. .+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 357999999999999999 6654
No 349
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.93 E-value=0.042 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--++++|+.||||||++ .+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 36889999999999999 7643
No 350
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.90 E-value=0.069 Score=42.26 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+++|.+|+||||+. .+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999 6643
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.87 E-value=0.064 Score=43.27 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|.|+|.+|+|||||. .+.+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999 6654
No 352
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.85 E-value=0.046 Score=47.33 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-++++|++|||||||+ .+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999 776
No 353
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.81 E-value=0.046 Score=45.69 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++++|++|+|||+|+ .+.+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 999999999999999 6654
No 354
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.81 E-value=0.065 Score=43.18 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=18.2
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|+|.|.+||||||+. .+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 357999999999999999 664
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.78 E-value=0.04 Score=47.90 Aligned_cols=20 Identities=20% Similarity=0.482 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhHhhhc
Q 023335 102 KISLLGDCQIGKTSFVKYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~ 121 (283)
.++|+|+.|+|||||++++.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~ 101 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLF 101 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 57899999999999994443
No 356
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.71 E-value=0.022 Score=46.14 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|.|.+|+||||++ .+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 4889999999999999 6643
No 357
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.63 E-value=0.055 Score=46.63 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999 5544
No 358
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.62 E-value=0.046 Score=44.71 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|+|.+||||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 664
No 359
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.61 E-value=0.042 Score=42.92 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+++.|++|+|||+|+ .+...
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999 76543
No 360
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.60 E-value=0.051 Score=45.74 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|+|.+|+|||||. .+..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999 7743
No 361
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.60 E-value=0.049 Score=46.43 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=17.0
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++++|++|+|||+|+ .+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 999999999999999 6654
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.57 E-value=0.045 Score=43.04 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=13.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|.|.+||||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 46999999999999999 664
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.57 E-value=0.061 Score=42.57 Aligned_cols=20 Identities=30% Similarity=0.195 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|++.|.+||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6644
No 364
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.52 E-value=0.053 Score=43.90 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|++|+|||||+ .+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999 8876
No 365
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.48 E-value=0.057 Score=45.54 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|++.|.+||||||+. .+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999 6653
No 366
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.48 E-value=0.059 Score=43.99 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|+|.+|+||||+. .+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 664
No 367
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.46 E-value=0.053 Score=48.20 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 3679999999999999 5554
No 368
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.44 E-value=0.061 Score=42.69 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|++.|.+||||||+. .+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 664
No 369
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.42 E-value=0.055 Score=44.50 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|+|++|+|||||+ .+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999 88763
No 370
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=92.40 E-value=0.062 Score=42.76 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|+|.|.+|+||||+. .+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999 6643
No 371
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.38 E-value=0.051 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|+|.+|+|||||+ .+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999 77653
No 372
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.37 E-value=0.056 Score=44.16 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.+++.|++|+|||+|+ .+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 7654
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.30 E-value=0.068 Score=42.44 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|++.|.+||||||+. .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999 6654
No 374
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=92.30 E-value=0.066 Score=41.61 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|+|.|.+||||||+. .+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 5899999999999999 664
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.29 E-value=0.065 Score=43.24 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+|.|.+||||||+. .+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 6653
No 376
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.28 E-value=0.062 Score=47.73 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 3679999999999999 5554
No 377
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.25 E-value=0.073 Score=42.48 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhcC
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
...|.|.|.+||||||+. .+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 467999999999999999 76543
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.24 E-value=0.068 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|+++|.+|+||||+. .+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 357999999999999999 664
No 379
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.20 E-value=0.083 Score=43.49 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=17.0
Q ss_pred eeE-EEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLK-ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~K-I~vlG~~~vGKSSLi-~~~~ 121 (283)
..| |+|+|+|||||+|.. ++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345 457899999999999 6653
No 380
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.19 E-value=0.064 Score=47.70 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHC
Confidence 3779999999999999 5544
No 381
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.17 E-value=0.066 Score=47.69 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHhc
Confidence 3779999999999999 5554
No 382
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.13 E-value=0.062 Score=44.79 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|.|+|+.|+|||||+ .+.+
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999 6644
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.13 E-value=0.066 Score=42.13 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.3
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.+|+|+.|+|||||+ .+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999 653
No 384
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.12 E-value=0.1 Score=43.04 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..-|+|.|..|+|||||+ .+.+
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999 6654
No 385
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.09 E-value=0.062 Score=47.81 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
--|+++|..||||||++ .+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 46889999999999999 7643
No 386
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.09 E-value=0.084 Score=45.48 Aligned_cols=21 Identities=24% Similarity=0.127 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
...|.|+|.+|+|||||+ .+.
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999 553
No 387
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.08 E-value=0.075 Score=43.88 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|+|+|.+|+||||+. .+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 57999999999999999 664
No 388
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.08 E-value=0.062 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|.|+|.+|+|||||+ .+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999 6643
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.08 E-value=0.064 Score=45.56 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
++++|++|+|||+|+ .+.+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 899999999999999 6654
No 390
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.07 E-value=0.061 Score=47.78 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|+|+|+.|+|||||+ .+++
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999 6654
No 391
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.06 E-value=0.069 Score=47.87 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEcCCCchHHHHHHHHHc
Confidence 3679999999999999 5544
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.03 E-value=0.07 Score=47.54 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=16.3
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+.|+|+.|+|||||+ .+.+
T Consensus 57 ~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 57 YGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEEcCCCchHHHHHHHHhc
Confidence 679999999999999 5544
No 393
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.02 E-value=0.067 Score=42.89 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=18.2
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.+++.|++|+|||+|+ .+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999 6654
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.00 E-value=0.073 Score=41.96 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|+|+|.+|+||||+. .+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 5999999999999998 664
No 395
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.96 E-value=0.07 Score=47.68 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcHHHHHHHHHHc
Confidence 3679999999999999 5544
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.95 E-value=0.072 Score=47.60 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHHc
Confidence 3679999999999999 5544
No 397
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.77 E-value=0.069 Score=49.48 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=48.6
Q ss_pred EEEEEEeCCCCCCccc-chh---hh---c-----ccCcEEEEEEECCChh-hHHHHHHHHHHHHhHCCCCceEEEeecCC
Q 023335 147 IAFSIWDVGGDSRSFD-HVP---IA---C-----KDAVAILFMFDLTSRC-TLNSIVGWYSEARKWNQTAIPILIGTKFD 213 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~~---~~---~-----~~ad~iilv~D~~~~~-s~~~~~~~~~~i~~~~~~~~~ilvgnK~D 213 (283)
+.+.+.||+|...... +.. .. . ...+-++||.|.+... .+.. ...+... -....+|.||.|
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~----ak~f~~~--~~itgvIlTKLD 449 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ----AKLFHEA--VGLTGITLTKLD 449 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH----HHHHHHH--TCCSEEEEECGG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH----HHHHHhh--cCCCEEEEEcCC
Confidence 3467899999754321 110 01 1 1246788999976542 2222 2222221 124478999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHH
Q 023335 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKI 255 (283)
Q Consensus 214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~l 255 (283)
- ..+ -..+..++..++.++.++. +|++++++
T Consensus 450 ~------tak---gG~~lsi~~~~~~PI~fig--~Ge~vdDL 480 (503)
T 2yhs_A 450 G------TAK---GGVIFSVADQFGIPIRYIG--VGERIEDL 480 (503)
T ss_dssp G------CSC---CTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred C------ccc---ccHHHHHHHHHCCCEEEEe--cCCChhhc
Confidence 2 111 2235566667788877643 34555443
No 398
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.74 E-value=0.073 Score=43.14 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|.|++|+|||+|+ .+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999 7754
No 399
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.71 E-value=0.076 Score=43.72 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|++|+|||+|+ +++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999998 7754
No 400
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=91.70 E-value=0.07 Score=47.67 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|++|+|||||+ .+.+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999 6654
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.67 E-value=0.08 Score=46.45 Aligned_cols=20 Identities=20% Similarity=0.468 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 6889999999999999 6554
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.66 E-value=0.061 Score=47.62 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHT
T ss_pred EEEEECCCCccHHHHHHHHHc
Confidence 4789999999999999 5544
No 403
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.64 E-value=0.077 Score=44.36 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+++.|++|+|||+|+ .+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 4999999999999999 6654
No 404
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.62 E-value=0.074 Score=46.60 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|++|+|||||+ .+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 4889999999999999 5543
No 405
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.59 E-value=0.072 Score=46.18 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|.|+|..|+|||||+ .+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999 6654
No 406
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.55 E-value=0.089 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
..|+|+|++|+|||+|. .+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999999999999 887653
No 407
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.54 E-value=0.1 Score=45.61 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.1
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+-|.|+|.+|||||||+ .+.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~ 113 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLK 113 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 467899999999999999 653
No 408
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.44 E-value=0.097 Score=43.90 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
..|.|+|.+|+||||++ .+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 47999999999999999 665
No 409
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.42 E-value=0.08 Score=47.04 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 6899999999999999 6654
No 410
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.42 E-value=0.085 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..-|++.|.+|+||||++ .+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999 6654
No 411
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.41 E-value=0.27 Score=44.47 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..-|+|+|.+|+||||+. ++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 345889999999999999 7764
No 412
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.40 E-value=0.094 Score=41.17 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|++.|.+|+||||+. .+..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999 5543
No 413
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.36 E-value=0.092 Score=42.57 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=17.7
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|+++|.+|+||||+. .+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999 6543
No 414
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.21 E-value=0.088 Score=47.34 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhC
Confidence 4789999999999999 5544
No 415
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.19 E-value=0.12 Score=42.93 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+||++.|.+|||||++. ++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHH
Confidence 689999999999999997 653
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.18 E-value=0.12 Score=42.07 Aligned_cols=22 Identities=18% Similarity=0.385 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.|+|.|.+||||||+. .+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 6643
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.10 E-value=0.093 Score=46.42 Aligned_cols=21 Identities=14% Similarity=0.477 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
++.++|+.|+|||||+ .+.+.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999 77654
No 418
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.08 E-value=0.086 Score=44.78 Aligned_cols=20 Identities=15% Similarity=0.180 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|+|++|+|||||+ .+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999 8775
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.07 E-value=0.11 Score=39.90 Aligned_cols=18 Identities=22% Similarity=0.401 Sum_probs=15.7
Q ss_pred EEEEcCCCCcHHHhH-hhh
Q 023335 103 ISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~ 120 (283)
.+|+|+.|+|||||+ .+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 579999999999999 753
No 420
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.94 E-value=0.12 Score=43.10 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+.|+|.|.+|+||||+. .+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999 664
No 421
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=90.90 E-value=0.12 Score=46.56 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.6
Q ss_pred CCceeeEEEEEcCCCCcHHHhH-hh
Q 023335 96 SDLVSLKISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 96 ~~~~~~KI~vlG~~~vGKSSLi-~~ 119 (283)
.....+|++++|...+||||++ ++
T Consensus 36 ~~~~~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 36 VYRATHRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp CCTTEEEEEEEESTTSSHHHHHHHH
T ss_pred HhhccceEEEecCCCCchhhHHHHH
Confidence 3456899999999999999999 54
No 422
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.89 E-value=0.062 Score=47.69 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++++|+.|+|||||+ .+.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 4779999999999999 5544
No 423
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.80 E-value=0.095 Score=45.26 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=47.4
Q ss_pred EEEEEEeCCCCCCccc-chh---hhcc--cCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCCCCCCCC
Q 023335 147 IAFSIWDVGGDSRSFD-HVP---IACK--DAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPP 220 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~~---~~~~--~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL~~~l~~ 220 (283)
..+.|.||+|...... ... ..+. ..+.+++|+|.+.. .+.+..+.+.+. .-...-+|.||.|. .
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~~giVltk~D~----~- 252 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPVNQYIFTKIDE----T- 252 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCCCEEEEECTTT----C-
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCCCEEEEeCCCc----c-
Confidence 4578899999765332 111 1222 36788999987643 334444433322 11122477799994 1
Q ss_pred CcccchHHHHHHHHHHcCCcEEEEc
Q 023335 221 DLQWTIATQARAYAKAMKATLFFSS 245 (283)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~e~S 245 (283)
.. ...+...+...+.++..++
T Consensus 253 -~~---~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 253 -TS---LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp -SC---CHHHHHHHHTCSCCCSEEC
T ss_pred -cc---hhHHHHHHHHHCcCEEEEE
Confidence 11 2355566777888766654
No 424
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.77 E-value=0.13 Score=39.83 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.|+|.|.+||||||+. .+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 36889999999999999 653
No 425
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.77 E-value=0.11 Score=44.44 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|++.|.+|+||||+. .+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999 7764
No 426
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.76 E-value=0.099 Score=47.46 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|+|+.|+|||||+ .+++
T Consensus 169 ii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 4889999999999999 7664
No 427
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.58 E-value=0.11 Score=43.19 Aligned_cols=20 Identities=30% Similarity=0.243 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|++.|++|+|||+|+ .+..
T Consensus 41 ~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6654
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=90.54 E-value=0.11 Score=44.02 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+++.|++|+|||+|+ .+.+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 5999999999999999 6643
No 429
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.52 E-value=0.087 Score=43.07 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+++.|+||+|||+++ .+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998 7754
No 430
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.47 E-value=0.11 Score=44.99 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCCCcccc-h------hhhc-----ccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCceEEEeecCCC
Q 023335 147 IAFSIWDVGGDSRSFDH-V------PIAC-----KDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDD 214 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~-~------~~~~-----~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~ilvgnK~DL 214 (283)
..+.+.||+|....... . ...+ ...+.+++|.|.+.. .+.+.. ...+.+. -.+.-+|.||.|-
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~-a~~~~~~--~~i~gvVlTk~D~ 261 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQ-AKIFKEA--VNVTGIILTKLDG 261 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence 34788999996432211 0 0111 247889999998633 122221 2222221 2233588899993
Q ss_pred CCCCCCCcccchHHHHHHHHHHcCCcEEEEcC
Q 023335 215 FVRLPPDLQWTIATQARAYAKAMKATLFFSSA 246 (283)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 246 (283)
.. .-..+..++...+.|+.+++.
T Consensus 262 ------~~---~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 262 ------TA---KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp ------CS---CTTHHHHHHHHHCCCEEEEEC
T ss_pred ------cc---chHHHHHHHHHHCCCEEEEeC
Confidence 11 123366777788988887754
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.40 E-value=0.11 Score=44.25 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.+++.|++|+|||+|+ .+.+
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 36899999999999999 6654
No 432
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.36 E-value=0.11 Score=43.71 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=17.4
Q ss_pred eEEEEEcCCCCcHHHhH-hhh
Q 023335 101 LKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~ 120 (283)
-.|+++|.+|+||||+. .+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 36999999999999999 653
No 433
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=90.14 E-value=0.081 Score=49.36 Aligned_cols=17 Identities=24% Similarity=0.417 Sum_probs=15.4
Q ss_pred EEEEcCCCCcHHHhH-hh
Q 023335 103 ISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~ 119 (283)
.+|+|..|+|||+|+ .+
T Consensus 63 n~i~G~NGaGKS~lleAl 80 (517)
T 4ad8_A 63 CAFTGETGAGKSIIVDAL 80 (517)
T ss_dssp EEEEESHHHHHHHHTHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 669999999999999 65
No 434
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.10 E-value=0.13 Score=47.99 Aligned_cols=20 Identities=20% Similarity=0.306 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999 6654
No 435
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.11 Score=47.66 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|+|+.|+|||||+ .+.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999 5544
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.01 E-value=0.14 Score=40.59 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcCc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~~ 123 (283)
.=|++.|++|+||||+. .++...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 35899999999999999 887643
No 437
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.98 E-value=0.12 Score=45.33 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|.|++|+|||+|+ .+.+
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999 7764
No 438
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.88 E-value=0.17 Score=43.25 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=18.5
Q ss_pred eeEEEEEcCCCCcHHHhH-hhh
Q 023335 100 SLKISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~ 120 (283)
.+.|+|.|.+||||||+. .+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999 665
No 439
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.85 E-value=0.11 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.282 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|+|..|+|||||+ .+.+.
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHhh
Confidence 3579999999999999 87754
No 440
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=89.80 E-value=0.13 Score=44.49 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-+++.|++|+|||+|+ .+.+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 4889999999999999 6654
No 441
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=89.79 E-value=0.13 Score=44.12 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=17.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-+++.|+||+|||+|+ .+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 45778899999999999 6643
No 442
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.78 E-value=0.14 Score=46.80 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
++.|+|+.|+|||||+ .+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999 66653
No 443
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=89.70 E-value=0.14 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-++|.|.+|+|||||+ .+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999 87653
No 444
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=89.59 E-value=0.17 Score=43.24 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..+++.|++|+|||+|+ .+..
T Consensus 68 ~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999 6543
No 445
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.58 E-value=0.19 Score=42.21 Aligned_cols=22 Identities=36% Similarity=0.465 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...|+|.|..|+||||++ .+..
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999 6543
No 446
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.57 E-value=0.16 Score=41.68 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
=++|.|.||+|||+|+ +++.
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999 8764
No 447
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.56 E-value=0.14 Score=45.72 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|++|+|||||+ .+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 6889999999999999 6653
No 448
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=89.55 E-value=0.14 Score=43.97 Aligned_cols=20 Identities=20% Similarity=0.240 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|++.|++|+|||+|+ .+.+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHH
Confidence 5899999999999999 6654
No 449
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.50 E-value=0.15 Score=43.42 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+++.|++|+|||+|+ .+..
T Consensus 52 ~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 6643
No 450
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.42 E-value=2.6 Score=34.29 Aligned_cols=85 Identities=8% Similarity=0.012 Sum_probs=55.9
Q ss_pred EEEEEEeCCCCCCcccchhhhcccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCCCCCCCCCCcccc
Q 023335 147 IAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFDDFVRLPPDLQWT 225 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~DL~~~l~~~~~~~ 225 (283)
+.+.|+|+++... ......+..+|.+|++...+ ..+...+..+++.++........ -+|.|+.|-. ...
T Consensus 119 yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~-------~~~ 188 (245)
T 3ea0_A 119 YDYIIVDFGASID--HVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN-------SRI 188 (245)
T ss_dssp CSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC-------TTS
T ss_pred CCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC-------CCC
Confidence 5578899987542 34555678899999998764 66777777888888765543333 5999999931 111
Q ss_pred hHHHHHHHHHHcCCcEEEE
Q 023335 226 IATQARAYAKAMKATLFFS 244 (283)
Q Consensus 226 ~~~~~~~~~~~~~~~~~e~ 244 (283)
.. +.+.+.++.+++.+
T Consensus 189 ~~---~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 189 TS---DEIEKVIGRPISKR 204 (245)
T ss_dssp CH---HHHHHHHTSCEEEE
T ss_pred CH---HHHHHHhCCCeEEE
Confidence 12 33445567776654
No 451
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.34 E-value=0.16 Score=44.86 Aligned_cols=20 Identities=35% Similarity=0.396 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++|.|++|+|||+|+ .+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~ 66 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE 66 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999 7764
No 452
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.34 E-value=0.16 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.8
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
...+++.|++|+|||+|+ .+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999 7654
No 453
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.24 E-value=0.18 Score=44.28 Aligned_cols=20 Identities=20% Similarity=0.400 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|+|+.|||||+|. .+..
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999 7754
No 454
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=89.24 E-value=0.15 Score=44.24 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|.|++|+|||+|+ .+..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999999 8764
No 455
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=89.22 E-value=0.17 Score=47.81 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
+++++|+.|+|||||++++.+
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 588999999999999944433
No 456
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=89.11 E-value=0.15 Score=42.28 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=19.8
Q ss_pred eeeEEEEE--cCCCCcHHHhH-hhhcCc
Q 023335 99 VSLKISLL--GDCQIGKTSFV-KYVGNE 123 (283)
Q Consensus 99 ~~~KI~vl--G~~~vGKSSLi-~~~~~~ 123 (283)
++=||+|+ |.++.|||.|+ ++.+..
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~~ 53 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHCS 53 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhccc
Confidence 34466666 99999999999 988764
No 457
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.08 E-value=0.2 Score=41.29 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=19.0
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
....|.|+|.+|+||||+. .+..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999 6643
No 458
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.06 E-value=0.2 Score=39.90 Aligned_cols=20 Identities=25% Similarity=0.532 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
++|+|.+++|||+|. ++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999 88755
No 459
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.06 E-value=0.16 Score=44.39 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=17.1
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+++.|++|+||||++ .+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 899999999999999 6655
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=88.99 E-value=0.19 Score=47.59 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
.++++|+.|+|||||++++.+
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 578999999999999944433
No 461
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.93 E-value=0.17 Score=46.74 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.5
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-++|+|+.|+|||||+ .+.
T Consensus 31 ~~~liG~nGsGKSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHh
Confidence 4789999999999999 654
No 462
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.91 E-value=0.2 Score=46.98 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.++++|+.|+|||||+ .+.+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 6889999999999999 5544
No 463
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.88 E-value=0.19 Score=40.04 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.5
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+++.|++|+||||++ ++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 678999999999998 7764
No 464
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.76 E-value=0.19 Score=44.58 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=15.9
Q ss_pred EEEEcCCCCcHHHhH-hhh
Q 023335 103 ISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~ 120 (283)
.+|+|+.|+|||||+ .++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 559999999999999 765
No 465
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.66 E-value=0.2 Score=43.76 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|+|+|++|||||||. .+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999 7754
No 466
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.66 E-value=0.2 Score=47.37 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+++++|+.|+|||||+ .+.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 5889999999999999 5443
No 467
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=88.66 E-value=0.19 Score=43.03 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+++.|++|+|||+++ .+..
T Consensus 49 ~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 6899999999999999 6654
No 468
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.54 E-value=0.18 Score=44.57 Aligned_cols=21 Identities=19% Similarity=0.260 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-+.|+|++|+|||||+ .++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4779999999999999 87654
No 469
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=88.41 E-value=0.19 Score=47.75 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
.++++|+.|+|||||++++.+
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999944433
No 470
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.38 E-value=0.19 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
+++.|++|+||||++ .+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999 76553
No 471
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=88.35 E-value=0.17 Score=44.41 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.++|.|++|+|||+|+ .+..
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999 7654
No 472
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.33 E-value=0.2 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.|++.|++|+|||+|+ .+.+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 36899999999999999 6654
No 473
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.21 E-value=0.22 Score=46.67 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-+.++|+.|+|||||+ .+.+
T Consensus 27 i~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999 5554
No 474
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.18 E-value=0.24 Score=40.03 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=15.1
Q ss_pred EEEEcCCCCcHHHhH-hh
Q 023335 103 ISLLGDCQIGKTSFV-KY 119 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~ 119 (283)
.+|+|+.|+|||||+ .+
T Consensus 26 ~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 578999999999999 65
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.18 E-value=0.22 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-|+|+|++|||||||. ++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 35889999999999999 7654
No 476
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=88.15 E-value=0.21 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
+++++|+.|+|||||++++.+
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 688999999999999944433
No 477
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.12 E-value=0.21 Score=43.46 Aligned_cols=20 Identities=25% Similarity=0.308 Sum_probs=17.5
Q ss_pred EEEEcCCCCcHHHhH-hhhcC
Q 023335 103 ISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~~ 122 (283)
+++.|++|+|||+++ .+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999 76543
No 478
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=88.09 E-value=0.3 Score=39.19 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=19.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..+.|.+.|..||||||+. .+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999 6643
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=87.97 E-value=0.2 Score=43.98 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.+++.|++|+|||+|+ .+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999 6643
No 480
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=87.95 E-value=0.24 Score=47.00 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhHhhhcC
Q 023335 102 KISLLGDCQIGKTSFVKYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi~~~~~ 122 (283)
+++++|+.|+|||||++++.+
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999944433
No 481
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.93 E-value=0.28 Score=42.77 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|+|++|||||+|. .+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 4789999999999999 8754
No 482
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.91 E-value=0.25 Score=39.43 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.|.|.|.+|+||||+. .+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 6889999999999999 6643
No 483
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=87.90 E-value=0.22 Score=43.26 Aligned_cols=21 Identities=24% Similarity=0.206 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-.|++.|++|+|||+|+ .+.+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999 6654
No 484
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=87.85 E-value=0.22 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHhH-hhhcC
Q 023335 101 LKISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
-.++++|++|+|||+++ .+...
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999 66543
No 485
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=87.82 E-value=0.24 Score=40.12 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=17.9
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
+.|++.|.+|+||||+. .+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 56999999999999999 6543
No 486
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.76 E-value=0.25 Score=42.77 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=18.7
Q ss_pred eeEEEEEcCCCCcHHHhH-hhhc
Q 023335 100 SLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 100 ~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.-.+++.|++|+|||+|+ .+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999 7654
No 487
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.74 E-value=0.23 Score=44.80 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
-+.|+|++|+|||||+ .++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 4789999999999999 775
No 488
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.56 E-value=0.11 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.7
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+++.|++|+|||+|+ .+.+
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 789999999999999 6654
No 489
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=87.46 E-value=0.36 Score=40.32 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=17.8
Q ss_pred eEEEEEcCCCCcHHHhH-hhhc
Q 023335 101 LKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 101 ~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..|++.|++|+|||+|+ .+..
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999 6654
No 490
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.45 E-value=0.99 Score=38.78 Aligned_cols=19 Identities=21% Similarity=0.078 Sum_probs=14.4
Q ss_pred EEEEcCCCCcHHHhH-hhhc
Q 023335 103 ISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 103 I~vlG~~~vGKSSLi-~~~~ 121 (283)
+++-|++|+|||+++ .+.+
T Consensus 51 ~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHH
Confidence 445566999999999 7653
No 491
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=87.44 E-value=0.23 Score=43.74 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-++|.|++|+|||+|+ .+..
T Consensus 47 ~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999 7754
No 492
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.36 E-value=0.27 Score=42.62 Aligned_cols=21 Identities=29% Similarity=0.380 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
=++|.|.||+|||+|+ .+..+
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999 88643
No 493
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.34 E-value=0.35 Score=42.04 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|+|+|++|||||+|. .+..
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 4789999999999999 8754
No 494
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=87.34 E-value=0.27 Score=42.72 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.9
Q ss_pred EEEEEcCCCCcHHHhH-hhh
Q 023335 102 KISLLGDCQIGKTSFV-KYV 120 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~ 120 (283)
.|++.|++|+|||+|+ .+.
T Consensus 57 ~vll~G~~GtGKT~la~~ia 76 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIIS 76 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 4899999999999999 664
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=87.30 E-value=0.27 Score=46.85 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.++|+.|+|||||+ .+.+
T Consensus 105 i~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCChHHHHHHHHhc
Confidence 5889999999999999 5554
No 496
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.28 E-value=0.25 Score=43.05 Aligned_cols=102 Identities=15% Similarity=0.154 Sum_probs=56.8
Q ss_pred EEEEEEeCCCCCCccc-chh------hh-----cccCcEEEEEEECCChhhHHHHHHHHHHHHhHCCCCce-EEEeecCC
Q 023335 147 IAFSIWDVGGDSRSFD-HVP------IA-----CKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIP-ILIGTKFD 213 (283)
Q Consensus 147 ~~l~i~Dt~G~~~~~~-~~~------~~-----~~~ad~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~-ilvgnK~D 213 (283)
+.+.|+||+|...... +.. .. -..+|.+++|.|.+.. .+. +..++...+...+ =+|.||.|
T Consensus 192 yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~----l~~~~~~~~~~~i~GvVltk~d 265 (320)
T 1zu4_A 192 YDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG----VIQAEEFSKVADVSGIILTKMD 265 (320)
T ss_dssp CSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH----HHHHHHHTTTSCCCEEEEECGG
T ss_pred CCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH----HHHHHHHhhcCCCcEEEEeCCC
Confidence 5678899999755321 110 01 1347899999998732 222 2233344443334 38999999
Q ss_pred CCCCCCCCcccchHHHHHHHHHHcCCcEEEEcCCCCcCHHHHH----HHHHHHHhC
Q 023335 214 DFVRLPPDLQWTIATQARAYAKAMKATLFFSSATHNINVNKIF----KFIMAKLFN 265 (283)
Q Consensus 214 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf----~~l~~~i~~ 265 (283)
- ... ...+..+....+.++.++. .|++++++- +.+++.++.
T Consensus 266 ~------~~~---~g~~~~~~~~~~~Pi~~i~--~Ge~~~dl~~~~~~~~~~~ll~ 310 (320)
T 1zu4_A 266 S------TSK---GGIGLAIKELLNIPIKMIG--VGEKVDDLLAFDIDQYIVHLSS 310 (320)
T ss_dssp G------CSC---TTHHHHHHHHHCCCEEEEE--CSSSTTCEEECCHHHHHHHHTG
T ss_pred C------CCc---hhHHHHHHHHHCcCEEEEe--CCCCccccccCCHHHHHHHHhC
Confidence 3 111 1245566667788876654 344544432 455555554
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.24 E-value=0.28 Score=46.03 Aligned_cols=20 Identities=50% Similarity=0.750 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
.+.|+|+.|+|||||+ .+.+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 3679999999999999 5554
No 498
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.23 E-value=0.25 Score=44.89 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhc
Q 023335 102 KISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~ 121 (283)
-|++.|+||+|||+|+ .+.+
T Consensus 208 GiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 4999999999999999 6654
No 499
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=87.16 E-value=0.3 Score=40.51 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=18.6
Q ss_pred eeeEEEEEcCCCCcHHHhH-hhhc
Q 023335 99 VSLKISLLGDCQIGKTSFV-KYVG 121 (283)
Q Consensus 99 ~~~KI~vlG~~~vGKSSLi-~~~~ 121 (283)
..+++.|+|.+||||||+. ++..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 4578999999999999999 7643
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=87.16 E-value=0.3 Score=45.79 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHhH-hhhcC
Q 023335 102 KISLLGDCQIGKTSFV-KYVGN 122 (283)
Q Consensus 102 KI~vlG~~~vGKSSLi-~~~~~ 122 (283)
.+.|+|+.|+|||||+ .+.+-
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4779999999999999 66553
Done!