BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023337
(283 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UMZ|B Chain B, Xyloglucan Endotransglycosylase In Complex With The
Xyloglucan Nonasaccharide Xllg.
pdb|1UN1|A Chain A, Xyloglucan Endotransglycosylase Native Structure.
pdb|1UN1|B Chain B, Xyloglucan Endotransglycosylase Native Structure
Length = 278
Score = 293 bits (751), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 150/271 (55%), Positives = 178/271 (65%), Gaps = 4/271 (1%)
Query: 12 SIAISSLMVASASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKI 71
+ A ++L F +++ TW K N G + L LDK +G+GFQSK YLFG
Sbjct: 3 TAAFAALRKPVDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHF 62
Query: 72 DMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQ 131
MQ+KLVPG+SAGTVTA+YL S S DEIDFEFLGN +G PY L TNVFT GKGDREQ+
Sbjct: 63 SMQMKLVPGDSAGTVTAFYLSSQNSEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQR 122
Query: 132 FHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA 191
+LWFDPT +FH YSVLWN IVF VD PIR FKN + GV FP NQPM+IYSSLWNA
Sbjct: 123 IYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNA 182
Query: 192 DDWATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFS---QELDATG 248
DDWATRGGL KTDW++APF ASYR+F+ + C W Q+LDA
Sbjct: 183 DDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGARWWDQKEFQDLDAFQ 242
Query: 249 QERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 279
RL WV++ Y IYNYC D R+P +P EC
Sbjct: 243 YRRLSWVRQKYTIYNYCTDRSRYP-SMPPEC 272
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
pdb|2VH9|B Chain B, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg,
A Xyloglucan Derived Oligosaccharide
Length = 290
Score = 184 bits (467), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 137/258 (53%), Gaps = 14/258 (5%)
Query: 26 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F Q + WG ++ L++ LD SGSGF+S + Y G +KL G +AG
Sbjct: 43 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 100
Query: 86 VTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTAD 141
+T++YL + PG DEID EFLG + G PYTL TNVF G GDRE + HLWFDPT D
Sbjct: 101 ITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQD 159
Query: 142 FHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLI 201
+H Y++ W P I+F+VD PIR + + FP +P+ +Y S+W+A WAT G
Sbjct: 160 YHNYAIYWTPSEIIFFVDDVPIRRYP--RKSDATFPL-RPLWVYGSVWDASSWATENGKY 216
Query: 202 KTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELDATGQERLKWVQKNYMI 261
K D+ PF Y +F +C P+ +L ++WVQKNYM+
Sbjct: 217 KADYRYQPFVGKYEDFKLGSCT-VEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMV 273
Query: 262 YNYCKDSKRFPQGLPKEC 279
YNYC D R L EC
Sbjct: 274 YNYCDDPTR-DHTLTPEC 290
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
pdb|2UWB|B Chain B, Crystal Structure Of The Nasturtium Seedling Mutant
Xyloglucanase Isoform Nxg1-Delta-Yniig
Length = 267
Score = 184 bits (467), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 102/258 (39%), Positives = 137/258 (53%), Gaps = 14/258 (5%)
Query: 26 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F Q + WG ++ L++ LD SGSGF+S + Y G +KL G +AG
Sbjct: 20 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 77
Query: 86 VTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTAD 141
+T++YL + PG DEID EFLG + G PYTL TNVF G GDRE + HLWFDPT D
Sbjct: 78 ITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDREMRIHLWFDPTQD 136
Query: 142 FHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLI 201
+H Y++ W P I+F+VD PIR + + FP +P+ +Y S+W+A WAT G
Sbjct: 137 YHNYAIYWTPSEIIFFVDDVPIRRYP--RKSDATFPL-RPLWVYGSVWDASSWATENGKY 193
Query: 202 KTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELDATGQERLKWVQKNYMI 261
K D+ PF Y +F +C P+ +L ++WVQKNYM+
Sbjct: 194 KADYRYQPFVGKYEDFKLGSCT-VEAASSCNPASVSPY--GQLSQQQVAAMEWVQKNYMV 250
Query: 262 YNYCKDSKRFPQGLPKEC 279
YNYC D R L EC
Sbjct: 251 YNYCDDPTR-DHTLTPEC 267
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
pdb|2UWC|B Chain B, Crystal Structure Of Nasturtium Xyloglucan Hydrolase
Isoform Nxg2
Length = 271
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/263 (39%), Positives = 137/263 (52%), Gaps = 19/263 (7%)
Query: 26 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F Q + WG ++ L++ LD SGSGF+S + Y G +KL G +AG
Sbjct: 19 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 76
Query: 86 VTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWF 136
+T++YL + PG DEID EFLG + G PYTL TNVF G GD RE + HLWF
Sbjct: 77 ITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLWF 135
Query: 137 DPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWAT 196
DPT D+H Y++ W P I+F+VD PIR + + FP +PM +Y S+W+A WAT
Sbjct: 136 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYP--RKSDATFPL-RPMWVYGSVWDASSWAT 192
Query: 197 RGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELDATGQERLKWVQ 256
G K D+ PF Y +F +C P+ +L ++WVQ
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCT-VEAASSCNPASVSPY--GQLSQQQVAAMEWVQ 249
Query: 257 KNYMIYNYCKDSKRFPQGLPKEC 279
KNYM+YNYC D R L EC
Sbjct: 250 KNYMVYNYCDDPTR-DHTLTPEC 271
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|B Chain B, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
pdb|2UWA|C Chain C, Crystal Structure Of The Nasturtium Seedling Xyloglucanase
Isoform Nxg1
Length = 274
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 137/263 (52%), Gaps = 19/263 (7%)
Query: 26 FYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F Q + WG ++ L++ LD SGSGF+S + Y G +KL G +AG
Sbjct: 22 FDQGYTNLWGPQHQRVDQGS--LTIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTAGV 79
Query: 86 VTAYYLKS----PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGD-----REQQFHLWF 136
+T++YL + PG DEID EFLG + G PYTL TNVF G GD RE + HLWF
Sbjct: 80 ITSFYLSNNQDYPGKH-DEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGREMRIHLWF 138
Query: 137 DPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWAT 196
DPT D+H Y++ W P I+F+VD PIR + + FP +P+ +Y S+W+A WAT
Sbjct: 139 DPTQDYHNYAIYWTPSEIIFFVDDVPIRRYP--RKSDATFPL-RPLWVYGSVWDASSWAT 195
Query: 197 RGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELDATGQERLKWVQ 256
G K D+ PF Y +F +C P+ +L ++WVQ
Sbjct: 196 ENGKYKADYRYQPFVGKYEDFKLGSCT-VEAASSCNPASVSPY--GQLSQQQVAAMEWVQ 252
Query: 257 KNYMIYNYCKDSKRFPQGLPKEC 279
KNYM+YNYC D R L EC
Sbjct: 253 KNYMVYNYCDDPTR-DHTLTPEC 274
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
pdb|3D6E|B Chain B, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase
Protein From Bacillus Licheniformis
Length = 201
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 76/154 (49%), Gaps = 18/154 (11%)
Query: 47 LLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEIDF 103
L S S +K G G QS Y +G ++ +K P + G V+A+Y + G+ WDEID
Sbjct: 38 LTSPSYNKFDGGGNQSVQTYGYGLYEVNMK--PAKNVGIVSAFYTSTGPTDGTPWDEIDI 95
Query: 104 EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPI 163
EFLG D + N +TNG G+ E+ +L FD +HTY+ W P I +YVDG
Sbjct: 96 EFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYHTYAFDWQPNSIKWYVDGQ-- 150
Query: 164 REFKNLESNGVLFPKNQPMRIYSSLW---NADDW 194
L+ P +IY SLW D+W
Sbjct: 151 -----LKHTATTQIPQTPGKIYMSLWAGAGVDEW 179
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
pdb|1MAC|B Chain B, Crystal Structure And Site-Directed Mutagenesis Of
Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase
Length = 212
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 30 FDITWGDGRGKILNNGQL----LSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F+ TW N+G+L S + +K + ++S + Y +G ++ +K P + G
Sbjct: 28 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 85
Query: 86 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADF 142
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD + F
Sbjct: 86 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 142
Query: 143 HTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
HTY+ W P I +YVDG L+ + P +I +LWN DDW
Sbjct: 143 HTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 190
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus
(1-3,1-4)- Beta-Glucanase
pdb|1GLH|A Chain A, Cation Binding To A Bacillus (1,3-1,4)-Beta-Glucanase.
Geometry, Affinity And Effect On Protein Stability
pdb|2AYH|A Chain A, Crystal And Molecular Structure At 1.6 Angstroms
Resolution Of The Hybrid Bacillus
Endo-1,3-1,4-Beta-D-Glucan 4- Glucanohydrolase H(A16-M)
Length = 214
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 30 FDITWGDGRGKILNNGQL----LSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F+ TW N+G+L S + +K + ++S + Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 86 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADF 142
V++++ + G+ WDEID EFLG D + N +TNG G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 143 HTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
HTY+ W P I +YVDG L+ + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|B Chain B, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|C Chain C, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
pdb|1U0A|D Chain D, Crystal Structure Of The Engineered
Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With
Beta-Glucan Tetrasaccharide
Length = 214
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 85/175 (48%), Gaps = 22/175 (12%)
Query: 30 FDITWGDGRGKILNNGQL----LSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F+ TW N+G+L S + +K + ++S + Y +G ++ +K P + G
Sbjct: 30 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 87
Query: 86 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADF 142
V++++ + G+ WD+ID +FLG D + N +TNG G E+ L FD + F
Sbjct: 88 VSSFFTYTGPAHGTQWDQIDIQFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGF 144
Query: 143 HTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
HTY+ W P I +YVDG L+ + P +I +LWN DDW
Sbjct: 145 HTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 192
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase
Length = 214
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 20/174 (11%)
Query: 30 FDITWGDGRGKILNNGQLLSLSLDKASGSGF---QSKSEYLFGKIDMQLKLVPGNSAGTV 86
F+ TW + + G++ LSL S + F +++S +G ++ + P + G V
Sbjct: 30 FNCTWRANNVSMTSLGEM-RLSLTSPSYNKFDCGENRSVQTYGYGLYEVNMKPAKNVGIV 88
Query: 87 TAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFH 143
++++ + G+ WDEID EFLG D + N +TNG G+ E+ +L FD +H
Sbjct: 89 SSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGVGNHEKIVNLGFDAANSYH 145
Query: 144 TYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
TY+ W P I +YVDG L+ P +I +LWN D+W
Sbjct: 146 TYAFDWQPNSIKWYVDGQ-------LKHTATTQIPQTPGKIMMNLWNGAGVDEW 192
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From
Bacillus Subtilis (Strain 168)
Length = 238
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 88/174 (50%), Gaps = 20/174 (11%)
Query: 30 FDITWGDGRGKILNNGQLLSLSLDKASGSGF---QSKSEYLFGKIDMQLKLVPGNSAGTV 86
F+ TW + + G++ L+L + + F +++S +G ++++ P + G V
Sbjct: 54 FNCTWRANNVSMTSLGEM-RLALTSPAYNKFDCGENRSVQTYGYGLYEVRMKPAKNTGIV 112
Query: 87 TAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFH 143
++++ + G+ WDEID EFLG D + N +TNG G+ E+ L FD +H
Sbjct: 113 SSFFTYTGPTDGTPWDEIDIEFLGK---DTTKVQFNYYTNGAGNHEKIVDLGFDAANAYH 169
Query: 144 TYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
TY+ W P I +YVDG + K+ +N + P +I +LWN D+W
Sbjct: 170 TYAFDWQPNSIKWYVDG----QLKHTATNQI---PTTPGKIMMNLWNGTGVDEW 216
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 214
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 60 FQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 116
++S + Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 117 HTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLF 176
N +TNG G E+ L FD + FHTY+ W P I +YVDG L+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATAN 113
Query: 177 PKNQPMRIYSSLWNA---DDW 194
+ P +I +LWN DDW
Sbjct: 114 IPSTPGKIMMNLWNGTGVDDW 134
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
pdb|1AXK|B Chain B, Engineered Bacillus Bifunctional Enzyme Gluxyn-1
Length = 394
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 60 FQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 116
++S + Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 117 HTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLF 176
N +TNG G E+ L FD + FHTY+ W P I +YVDG L+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATAN 113
Query: 177 PKNQPMRIYSSLWNA---DDW 194
+ P +I +LWN DDW
Sbjct: 114 IPSTPGKIMMNLWNGTGVDDW 134
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted
Jellyroll Protein Shown By Crystal Structure Analysis
Length = 208
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 60 FQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTL 116
++S + Y +G ++ +K P + G V++++ + G+ WDEID EFLG D +
Sbjct: 6 YRSTNIYGYGLYEVSMK--PAKNTGIVSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKV 60
Query: 117 HTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLF 176
N +TNG G E+ L FD + FHTY+ W P I +YVDG L+
Sbjct: 61 QFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATAN 113
Query: 177 PKNQPMRIYSSLWNA---DDW 194
+ P +I +LWN DDW
Sbjct: 114 IPSTPGKIMMNLWNGTGVDDW 134
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 23/165 (13%)
Query: 42 LNNGQL-LSLSLDKASGSGFQSKSEYL----FGKIDMQLKLVPGNSAGTVTAYYLKS--- 93
L +G L LS++ D S S + +EY FG Q+++ P + G V++++ +
Sbjct: 59 LKDGILNLSITDDMPSSSKPYAGAEYRTRDKFGYGLYQVRMKPAKNPGIVSSFFTYTGPV 118
Query: 94 PGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQR 153
G+ WDEID EFLG D + N +TN G+ E + L FD + DFH Y+ W P
Sbjct: 119 HGTPWDEIDIEFLGK---DTTKVQFNYYTNSAGNHEYIYDLRFDASEDFHIYAFNWQPNY 175
Query: 154 IVFYVDGSPI-REFKNLESNGVLFPKNQPMRIYSSLW---NADDW 194
I + VDG + R + ++ P +I ++W D+W
Sbjct: 176 IAWLVDGEEVYRAYDDIPV--------HPGKIMLNIWPGIGVDEW 212
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
pdb|1AJK|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-84
Length = 214
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 13/103 (12%)
Query: 95 GSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRI 154
G+ WDEID EFLG D + N +TNG G E+ L FD + FHTY+ W P I
Sbjct: 17 GTQWDEIDIEFLGK---DTTKVQFNYYTNGVGGHEKVISLGFDASKGFHTYAFDWQPGYI 73
Query: 155 VFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNA---DDW 194
+YVDG L+ + P +I +LWN DDW
Sbjct: 74 KWYVDGV-------LKHTATANIPSTPGKIMMNLWNGTGVDDW 109
>pdb|3AXD|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXD|B Chain B, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN APO-Form
pdb|3AXE|A Chain A, The Truncated Fibrobacter Succinogenes
1,3-1,4-Beta-D-Glucanase V18yW203Y IN COMPLEX WITH
CELLOTETRAOSE (CELLOBIOSE DENSITY WAS Observed)
Length = 249
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 50 LSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDF 103
+S+ SG+ + EY +GK + ++K+ ++GTV++ +L GS W E+D
Sbjct: 2 VSMKDFSGAELYTLEEYQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDI 59
Query: 104 EFLGNLSGDPYTLHTNVFTNGKG-DREQQFHLWFDPTAD--FHTYSVLWNPQRIVFYVDG 160
E LG P + +N+ T G + + H P AD FHTY + W P + + VDG
Sbjct: 60 EVLGK---SPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDG 116
Query: 161 SPIRE 165
+R+
Sbjct: 117 QEVRK 121
>pdb|3H0O|A Chain A, The Importance Of Ch-Pi Stacking Interactions Between
Carbohydrate And Aromatic Residues In Truncated
Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase
Length = 240
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 56 SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 109
SG+ + E +GK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 110 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPTAD--FHTYSVLWNPQRIVFYVDGSPIRE 165
+P + +N+ T G + + H P AD FHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|2R49|A Chain A, Mutational And Structural Studies Of E85i Reveal The
Flexible Loops Of Fibrobacter Succinogenes
1,3-1,4-beta-d- Glucanaseglucanase
Length = 241
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 56 SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 109
SG+ + E +GK + ++K+ ++GTV++ +L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMFLYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 110 SGDPYTLHTNVFTNGKGDREQQF-HLWFDPTAD--FHTYSVLWNPQRIVFYVDGSPIRE 165
+P + +N+ T G ++ H P AD FHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSIKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|3HR9|A Chain A, The Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-
Glucanase F40i Mutant
Length = 241
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 14/119 (11%)
Query: 56 SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 109
SG+ + E +GK + ++K+ ++GTV++ L GS W E+D E LG
Sbjct: 6 SGAELYTLEEVQYGKFEARMKMAA--ASGTVSSMILYQNGSEIADGRPWVEVDIEVLGK- 62
Query: 110 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPTAD--FHTYSVLWNPQRIVFYVDGSPIRE 165
+P + +N+ T G + + H P AD FHTY + W P + + VDG +R+
Sbjct: 63 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 119
>pdb|1MVE|A Chain A, Crystal Structure Of A Natural Circularly-Permutated
Jellyroll Protein: 1,3-1,4-Beta-D-Glucanase From
Fibrobacter Succinogenes
Length = 243
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 56 SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 109
SG+ + E +GK + + K ++GTV++ +L GS W E+D E LG
Sbjct: 8 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 64
Query: 110 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPTAD--FHTYSVLWNPQRIVFYVDGSPIRE 165
+P + +N+ T G + + H P AD FHTY + W P + + VDG +R+
Sbjct: 65 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 121
>pdb|1ZM1|A Chain A, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
pdb|1ZM1|B Chain B, Crystal Structures Of Complex F. Succinogenes
1,3-1,4-Beta- D-Glucanase And Beta-1,3-1,4-Cellotriose
Length = 241
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 14/119 (11%)
Query: 56 SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGST------WDEIDFEFLGNL 109
SG+ + E +GK + + K ++GTV++ +L GS W E+D E LG
Sbjct: 5 SGAELYTLEEVQYGKFEARXKXAA--ASGTVSSXFLYQNGSEIADGRPWVEVDIEVLGK- 61
Query: 110 SGDPYTLHTNVFTNGKG-DREQQFHLWFDPTAD--FHTYSVLWNPQRIVFYVDGSPIRE 165
+P + +N+ T G + + H P AD FHTY + W P + + VDG +R+
Sbjct: 62 --NPGSFQSNIITGKAGAQKTSEKHHAVSPAADQAFHTYGLEWTPNYVRWTVDGQEVRK 118
>pdb|1DYP|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose 4 Galactohydrolase
Length = 271
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 59/149 (39%), Gaps = 22/149 (14%)
Query: 42 LNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLK---LVPGNSAG-----TVTAYYLKS 93
N Q+ + L SG +S++ +G + ++K PG S T+ K
Sbjct: 72 CNQQQVANYPLYYTSGVA-KSRATGNYGYYEARIKGASTFPGVSPAFWXYSTIDRSLTKE 130
Query: 94 PGSTWDEIDFEFLGNLSG---DPYTLHTNVFTNGK----------GDREQQFHLWFDPTA 140
+ EID L S + LH V NGK +HL FDP
Sbjct: 131 GDVQYSEIDVVELTQKSAVRESDHDLHNIVVKNGKPTWXRPGSFPQTNHNGYHLPFDPRN 190
Query: 141 DFHTYSVLWNPQRIVFYVDGSPIREFKNL 169
DFHTY V +I +YVDG + E NL
Sbjct: 191 DFHTYGVNVTKDKITWYVDGEIVGEKDNL 219
>pdb|1AJO|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
pdb|1AJO|B Chain B, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4-
Glucanohydrolase Cpa16m-127
Length = 214
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 126 GDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIY 185
G E+ L FD + FHTY+ W P I +YVDG L+ + P +I
Sbjct: 2 GGHEKVISLGFDASKGFHTYAFDWQPGYIKWYVDGV-------LKHTATANIPSTPGKIM 54
Query: 186 SSLWNA---DDW 194
+LWN DDW
Sbjct: 55 MNLWNGTGVDDW 66
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 30 FDITWGDGRGKILNNGQL----LSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGT 85
F+ TW N+G+L S + +K + ++S + Y +G ++ +K P + G
Sbjct: 118 FNCTWRANNVNFTNDGKLKLGLTSSAYNKFDCAEYRSTNIYGYGLYEVSMK--PAKNTGI 175
Query: 86 VTAYYL---KSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNG 124
V++++ + G+ WDEID EFLG D + N +TNG
Sbjct: 176 VSSFFTYTGPAHGTQWDEIDIEFLGK---DTTKVQFNYYTNG 214
>pdb|2HYK|A Chain A, The Crystal Structure Of An Endo-Beta-1,3-Glucanase From
Alkaliphilic Nocardiopsis Sp.Strain F96
Length = 245
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 44 NGQLLSLSLDKASGS------GFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKS---P 94
NG L+ + +A G Q+K + +G+++ +++ G G A+++ P
Sbjct: 57 NGNLVITARQEADGGYTSARLTTQNKVQPQYGRVEASIQIPRGQ--GIWPAFWMLGADFP 114
Query: 95 GSTW-DEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTA-----DFHTYSVL 148
+ W D + + + N+ +P+ +H ++ G E + P FHT++V
Sbjct: 115 NTPWPDSGEIDIMENIGREPHLVHGSLHGPGYFGGEPLTGSYMHPQGWSFADTFHTFAVD 174
Query: 149 WNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDW 194
W P I + VDG + + + ++ G + +QP + ++ DW
Sbjct: 175 WRPGSITWSVDGVAYQTYTSADTRGNPWVFDQPFFMILNVAVGGDW 220
>pdb|2VY0|A Chain A, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
pdb|2VY0|B Chain B, The X-Ray Structure Of Endo-Beta-1,3-Glucanase From
Pyrococcus Furiosus
Length = 264
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 100 EIDF-EFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDP------TADFHTYSVLWNPQ 152
EID EFLG+ +P T+H V G + + P T DFH + ++W P
Sbjct: 137 EIDIMEFLGH---EPRTIHGTVHGPGYSGSKGITRAYTLPEGVPDFTEDFHVFGIVWYPD 193
Query: 153 RIVFYVDGSPIREF--KNLESNGVLFPKNQPMRIYSSL 188
+I +YVDG+ E + +E+ G + ++P I +L
Sbjct: 194 KIKWYVDGTFYHEVTKEQVEAMGYEWVFDKPFYIILNL 231
>pdb|3ILN|A Chain A, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
pdb|3ILN|B Chain B, X-Ray Structure Of The Laminarinase From Rhodothermus
Marinus
Length = 251
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 71/158 (44%), Gaps = 23/158 (14%)
Query: 61 QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYL----KSPGSTW--DEIDFEFLGNLSGDPY 114
+ K+ + +G+ +++ +L G GT A ++ ++ GS + D + + ++ +P
Sbjct: 78 RGKASWTYGRFEIRARLPSGR--GTWPAIWMLPDRQTYGSAYWPDNGEIDIAEHVGFNPD 135
Query: 115 TLHTNVFTNGKG-----DREQQFHLWFDPTA--DFHTYSVLWNPQRIVFYVDGS-----P 162
+H V T R + PTA DFH Y++ W P+ I ++VD S P
Sbjct: 136 VVHGTVHTKAYNHLLGTQRGGSIRV---PTARTDFHVYAIEWTPEEIRWFVDDSLYYRFP 192
Query: 163 IREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGL 200
N E++ +P +QP + ++ W + G+
Sbjct: 193 NERLTNPEADWRHWPFDQPFHLIMNIAVGGTWGGQQGV 230
>pdb|3ATG|A Chain A, Endo-1,3-Beta-Glucanase From Cellulosimicrobium Cellulans
Length = 256
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 11/109 (10%)
Query: 61 QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKS---PGSTWDEI-DFEFLGNLSGDPYTL 116
Q K + +G+I+ ++++ G G A+++ PG+ W + + + N+ +P+ +
Sbjct: 76 QGKYQPQYGRIEARIQIPRGQ--GIWPAFWMLGGSFPGTPWPSSGEIDIMENVGFEPHRV 133
Query: 117 HTNVFTNGKGDREQQFHLWFDPTA-----DFHTYSVLWNPQRIVFYVDG 160
H V G ++ P FHT++V W P I ++VDG
Sbjct: 134 HGTVHGPGYSGGSGITGMYQHPQGWSFADTFHTFAVDWKPGEITWFVDG 182
>pdb|3AZX|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZX|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZY|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3AZZ|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3AZZ|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Gluconolactone
pdb|3B00|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B00|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8 In Complex With
Cetyltrimethylammonium Bromide
pdb|3B01|A Chain A, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|B Chain B, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|C Chain C, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
pdb|3B01|D Chain D, Crystal Structure Of The Laminarinase Catalytic Domain
From Thermotoga Maritima Msb8
Length = 272
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 61 QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 115
+ K E +GKI+++ KL G + G T EID E LG+ + Y
Sbjct: 89 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 148
Query: 116 LHTNVFTNGKGDREQQFHL---WFDPTADFHTYSVLWNPQRIVFYVDGS 161
+G +HL D + DFH +S+ W+ + +YVDG
Sbjct: 149 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQ 197
>pdb|4DFS|A Chain A, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
pdb|4DFS|B Chain B, Structure Of The Catalytic Domain Of An
Endo-1,3-Beta-Glucanase (Laminarinase) From Thermotoga
Petrophila Rku-1
Length = 267
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 8/109 (7%)
Query: 61 QSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGS----TWDEIDF-EFLGNLSGDPYT 115
+ K E +GKI+++ KL G + G T EID E LG+ + Y
Sbjct: 97 EGKFEIKYGKIEIRAKLPKGKGIWPALWMLGNNIGEVGWPTCGEIDIMEMLGHDTRTVYG 156
Query: 116 LHTNVFTNGKGDREQQFHL---WFDPTADFHTYSVLWNPQRIVFYVDGS 161
+G +HL D + DFH +S+ W+ + +YVDG
Sbjct: 157 TAHGPGYSGGASIGVAYHLPEGVPDFSEDFHIFSIEWDEDEVEWYVDGQ 205
>pdb|1UPS|A Chain A, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
pdb|1UPS|B Chain B, Glcnac[alpha]1-4gal Releasing Endo-[beta]-Galactosidase
From Clostridium Perfringens
Length = 420
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 137 DPTADFHTYSVLWNPQRIVFYVD 159
DPT+++H Y++ W P + FY D
Sbjct: 209 DPTSEYHIYAMEWTPTALKFYYD 231
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 15/90 (16%)
Query: 194 WATRGGLIKTDWTQAPFTASYRNFNANACVWXXXXXXXXXXXXXPWFSQELDATGQERLK 253
+ T GG I WT AP SYR F + + VW W E+ G ER
Sbjct: 205 YTTSGGKIPIRWT-APEAISYRKFTSASDVWSFGIVM--------W---EVMTYG-ERPY 251
Query: 254 WVQKNYMIYNYCKDSKRFPQGLPKECAFNI 283
W N+ + D R P P +C I
Sbjct: 252 WELSNHEVMKAINDGFRLPT--PMDCPSAI 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,182,761
Number of Sequences: 62578
Number of extensions: 397439
Number of successful extensions: 788
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 39
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)