Query 023337
Match_columns 283
No_of_seqs 282 out of 1837
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:15:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03161 Probable xyloglucan e 100.0 5.2E-84 1.1E-88 587.3 33.7 261 22-282 23-289 (291)
2 cd02176 GH16_XET Xyloglucan en 100.0 7E-82 1.5E-86 569.8 32.3 256 23-279 3-263 (263)
3 cd02183 GH16_fungal_CRH1_trans 100.0 2.4E-43 5.3E-48 309.1 24.3 177 30-220 10-200 (203)
4 cd02175 GH16_lichenase lichena 100.0 7E-38 1.5E-42 276.2 23.8 173 31-220 26-211 (212)
5 PF00722 Glyco_hydro_16: Glyco 100.0 1.1E-35 2.3E-40 255.5 20.2 174 28-218 3-185 (185)
6 cd00413 Glyco_hydrolase_16 gly 100.0 2.7E-33 5.9E-38 244.9 22.2 171 31-219 24-209 (210)
7 cd02178 GH16_beta_agarase Beta 100.0 3.7E-33 8E-38 253.1 21.1 178 35-220 56-257 (258)
8 cd08023 GH16_laminarinase_like 100.0 1.1E-32 2.4E-37 246.0 21.3 178 32-220 33-235 (235)
9 cd02177 GH16_kappa_carrageenas 100.0 5E-31 1.1E-35 239.9 21.2 170 36-220 43-268 (269)
10 cd02180 GH16_fungal_KRE6_gluca 100.0 1.9E-30 4E-35 238.9 18.3 181 33-220 37-294 (295)
11 cd02182 GH16_Strep_laminarinas 100.0 2.9E-30 6.2E-35 234.3 19.1 181 33-220 42-258 (259)
12 cd08024 GH16_CCF Coelomic cyto 100.0 4.8E-29 1E-33 233.4 18.1 138 56-195 100-279 (330)
13 cd02179 GH16_beta_GRP beta-1,3 100.0 2.7E-28 5.8E-33 227.4 17.3 135 56-192 97-268 (321)
14 COG2273 SKN1 Beta-glucanase/Be 99.9 9E-25 1.9E-29 205.5 18.4 156 31-195 73-242 (355)
15 PF06955 XET_C: Xyloglucan end 99.8 3.8E-21 8.3E-26 132.3 4.1 45 235-279 4-51 (51)
16 cd02181 GH16_fungal_Lam16A_glu 99.7 3.2E-16 7E-21 143.2 13.5 169 22-195 9-251 (293)
17 PF03935 SKN1: Beta-glucan syn 99.7 1.2E-15 2.5E-20 147.9 13.5 177 36-221 160-453 (504)
18 PF06439 DUF1080: Domain of Un 93.2 1.3 2.8E-05 37.2 10.6 120 42-169 28-156 (185)
19 smart00560 LamGL LamG-like jel 93.0 4 8.6E-05 32.9 13.5 71 138-225 59-131 (133)
20 PF13385 Laminin_G_3: Concanav 93.0 2.8 6.1E-05 33.1 11.9 65 138-220 83-147 (157)
21 smart00210 TSPN Thrombospondin 91.3 4.6 9.9E-05 34.6 11.8 88 70-167 55-144 (184)
22 smart00159 PTX Pentraxin / C-r 89.9 13 0.00027 32.5 16.4 72 138-220 88-161 (206)
23 PF09264 Sial-lect-inser: Vibr 86.4 1.2 2.6E-05 38.6 4.6 102 53-167 14-121 (198)
24 PF10287 DUF2401: Putative TOS 85.3 3.7 8E-05 36.9 7.3 77 70-152 102-207 (235)
25 cd00152 PTX Pentraxins are pla 80.8 36 0.00078 29.4 17.0 72 138-220 88-161 (201)
26 cd00110 LamG Laminin G domain; 79.7 29 0.00062 27.5 16.3 84 67-164 20-104 (151)
27 PF14099 Polysacc_lyase: Polys 77.8 20 0.00044 31.1 9.3 71 137-219 149-224 (224)
28 KOG1834 Calsyntenin [Extracell 76.2 14 0.0003 38.1 8.4 53 138-195 440-492 (952)
29 PF11948 DUF3465: Protein of u 67.6 24 0.00052 28.9 6.6 25 35-59 33-57 (131)
30 PF00354 Pentaxin: Pentaxin fa 58.6 1.1E+02 0.0024 26.5 9.6 85 138-253 82-168 (195)
31 PF09224 DUF1961: Domain of un 56.9 40 0.00087 30.0 6.5 59 140-219 159-218 (218)
32 PF07172 GRP: Glycine rich pro 54.9 9.3 0.0002 29.5 2.0 7 1-7 1-7 (95)
33 PF02973 Sialidase: Sialidase, 51.2 1.7E+02 0.0036 25.6 11.7 132 64-222 30-175 (190)
34 smart00282 LamG Laminin G doma 47.6 86 0.0019 24.5 6.8 27 139-165 61-87 (135)
35 PF02210 Laminin_G_2: Laminin 40.5 1.6E+02 0.0034 22.2 8.7 31 138-168 52-82 (128)
36 KOG4352 Fas-mediated apoptosis 29.4 1.1E+02 0.0024 25.8 4.6 36 129-165 92-127 (187)
37 PRK01904 hypothetical protein; 28.1 1.3E+02 0.0027 26.7 5.2 13 245-257 204-217 (219)
38 KOG0674 Calreticulin [Posttran 27.3 5.6E+02 0.012 24.5 11.4 24 142-165 170-194 (406)
39 PRK02710 plastocyanin; Provisi 25.9 1.8E+02 0.0039 22.9 5.3 8 34-41 44-51 (119)
40 COG3354 FlaG Putative archaeal 23.1 1.5E+02 0.0033 24.8 4.3 41 4-44 7-66 (154)
41 PF12248 Methyltransf_FA: Farn 22.5 3.5E+02 0.0076 20.6 7.0 46 138-190 50-97 (102)
42 cd06526 metazoan_ACD Alpha-cry 22.4 2E+02 0.0043 20.9 4.6 53 34-89 18-70 (83)
43 PF07691 PA14: PA14 domain; I 20.4 1.2E+02 0.0026 23.8 3.3 29 138-167 57-85 (145)
44 PF00054 Laminin_G_1: Laminin 20.2 3.6E+02 0.0079 21.1 6.1 29 139-167 52-80 (131)
45 cd00070 GLECT Galectin/galacto 20.2 1.8E+02 0.0038 23.0 4.2 46 121-167 58-104 (127)
No 1
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional
Probab=100.00 E-value=5.2e-84 Score=587.31 Aligned_cols=261 Identities=54% Similarity=1.053 Sum_probs=242.0
Q ss_pred cccccccCCeeeecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCCCCCcceE
Q 023337 22 SASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEI 101 (283)
Q Consensus 22 ~~~~f~~~f~~~w~~~nv~~~~~G~~l~l~~d~~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~~~~~~EI 101 (283)
...+|.++|+.+|+.+|+.+.++|..|+|+||+.+|++|+||+.|+||+||+|||+|+++++|+||||||++.++.++||
T Consensus 23 ~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~~~~dEI 102 (291)
T PLN03161 23 VEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTGSRHDEI 102 (291)
T ss_pred ccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCCCCCCeE
Confidence 45689999999999999999888888999999999999999999999999999999998889999999999976789999
Q ss_pred EEEecCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCCC
Q 023337 102 DFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQP 181 (283)
Q Consensus 102 DiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P 181 (283)
||||+|+++++++++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 103 DiEfLG~~~g~~~~vqtN~y~~g~g~re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~~~g~~yP~~~p 182 (291)
T PLN03161 103 DFEFLGNVSGQPYTIHTNIYTQGNGSREQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYENEGIAYPNKQG 182 (291)
T ss_pred EEEecCCCCCCceEEEeceEeCCcCCcceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEcccccCCcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777888999889
Q ss_pred eEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEEeEEeeCCCC--CcCCCCCCCCccc----cCCCHHHHHHHHHH
Q 023337 182 MRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWSNGK--SSCNSKNNNPWFS----QELDATGQERLKWV 255 (283)
Q Consensus 182 m~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~~~c~~~~~~--~~C~~~~~~~~~~----~~l~~~~~~~~~~~ 255 (283)
|+|++|||+|++|||+||++|+||+++||+|.|++|++++|.++++. ..|...+...||. ++|+++|+++|+||
T Consensus 183 M~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~l~~~~~~~~~~v 262 (291)
T PLN03161 183 MRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVSIKQCADPTPSNWWTSPSYSQLTNAQLTQMKKV 262 (291)
T ss_pred eEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCCccccCCCCccccccCccccCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987542 4797532345665 48999999999999
Q ss_pred hhcCeEeccccCCCCCCCCCCCCccCC
Q 023337 256 QKNYMIYNYCKDSKRFPQGLPKECAFN 282 (283)
Q Consensus 256 ~~~~~~y~yc~d~~r~~~~~~~ec~~~ 282 (283)
|+||||||||+|++|||+++||||.++
T Consensus 263 ~~~~m~Y~YC~D~~R~~~~~p~EC~~~ 289 (291)
T PLN03161 263 RDNFMIYDYCKDTKRFNGVMPPECFKP 289 (291)
T ss_pred HhCcEEEeccCCCCcCCCCcCcccCCC
Confidence 999999999999999998789999765
No 2
>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16. Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling.
Probab=100.00 E-value=7e-82 Score=569.77 Aligned_cols=256 Identities=55% Similarity=1.083 Sum_probs=238.9
Q ss_pred ccccccCCeeeecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCC-CCCcceE
Q 023337 23 ASNFYQDFDITWGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEI 101 (283)
Q Consensus 23 ~~~f~~~f~~~w~~~nv~~~~~G~~l~l~~d~~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~-~~~~~EI 101 (283)
+..|.++|.++|+++|+++.++|+.|+|+||+++|++|+||..|+||+||||||+|+++++|+||||||+++ ||.++||
T Consensus 3 ~~~f~~~~~~~w~~~~~~~~~~g~~~~L~ld~~s~~~i~Sk~~f~YG~~E~riKlp~g~s~G~~pAFwl~~~~wp~~~EI 82 (263)
T cd02176 3 AASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPGDSAGTVTAFYLSSQGPDNHDEI 82 (263)
T ss_pred cCCccccceeeEcCCcEEEeCCCCEEEEEEcCCCCccEEEccEEEEEEEEEEEEeCCCCCCCeEEEEEECCCCCCCCCeE
Confidence 467999999999999999988888899999999999999999999999999999999877899999999998 6899999
Q ss_pred EEEecCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCCC
Q 023337 102 DFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQP 181 (283)
Q Consensus 102 DiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~P 181 (283)
|||++|+++++++++|||+|.+|.+++++++.++||++++||+|+|+|+|++|+|||||++||++++.+..+.+||+++|
T Consensus 83 D~E~lGn~~g~~~~~qtnv~~~g~g~r~~~~~l~fdpt~dFHtY~i~Wtp~~I~fyVDG~~vr~~~~~~~~g~~~P~~~P 162 (263)
T cd02176 83 DFEFLGNVTGQPYTLQTNVFANGVGGREQRIYLWFDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQP 162 (263)
T ss_pred EEEEecccCCCceEEEEEEeCCCCCCCceeeecCCCCCCCeEEEEEEEccceEEEEECCEEEEEEecccccCCCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998777888999899
Q ss_pred eEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEEeEEeeCCCCCcCCCCCCCCccc----cCCCHHHHHHHHHHhh
Q 023337 182 MRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNANACVWSNGKSSCNSKNNNPWFS----QELDATGQERLKWVQK 257 (283)
Q Consensus 182 m~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~~~c~~~~~~~~C~~~~~~~~~~----~~l~~~~~~~~~~~~~ 257 (283)
|+|++|||+||+|||+||++|+||+++||+|.|++|++++|.++++...|.......||+ ++|+++|+++|+|||+
T Consensus 163 m~l~~niW~g~~WAt~gG~~~~d~~~aPf~a~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 242 (263)
T cd02176 163 MGVYASIWDGSDWATQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCSCTEDWWNGSTYQQLSANQQRAMEWVRR 242 (263)
T ss_pred EEEEEeeEcCCCcccCCCcccccCCCCCeeEEEeeEEEeeeecCCCCccccCCCccccccccccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999887655565422234655 5899999999999999
Q ss_pred cCeEeccccCCCCCCCCCCCCc
Q 023337 258 NYMIYNYCKDSKRFPQGLPKEC 279 (283)
Q Consensus 258 ~~~~y~yc~d~~r~~~~~~~ec 279 (283)
||||||||+|++|||. +||||
T Consensus 243 ~~~~y~yC~d~~r~~~-~p~ec 263 (263)
T cd02176 243 NYMVYDYCDDRKRYPV-PPPEC 263 (263)
T ss_pred CCEEEecCCCCCcCCC-CcCCC
Confidence 9999999999999996 89999
No 3
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase. Group of fungal GH16 members related to Saccharomyces cerevisiae Crh1p. Chr1p and Crh2p are transglycosylases that are required for the linkage of chitin to beta(1-3)glucose branches of beta(1-6)glucan, an important step in the assembly of new cell wall. Both have been shown to be glycosylphosphatidylinositol (GPI)-anchored. A third homologous protein, Crr1p, functions in the formation of the spore wall. They belongs to the family 16 of glycosyl hydrolases that includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.4e-43 Score=309.09 Aligned_cols=177 Identities=33% Similarity=0.671 Sum_probs=153.8
Q ss_pred CeeeecCCCeEEecCCcEEEEEEecC-CCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCCCCCcceEEEEecCC
Q 023337 30 FDITWGDGRGKILNNGQLLSLSLDKA-SGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGN 108 (283)
Q Consensus 30 f~~~w~~~nv~~~~~G~~l~l~~d~~-sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~~~~~~EIDiE~lg~ 108 (283)
++++...++|...++| |.|+|++. +|++|+|++.|+||+||||||+|.+ +|+||||||+++ .++|||||++|+
T Consensus 10 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~i~s~~~f~YG~~EaR~Klp~g--~G~wpAfWl~~~--~~gEIDIE~~G~ 83 (203)
T cd02183 10 YDWTVTSGTVDYDDDG--ASLTIPKRGDGPTISSTFYIFYGKVEVTMKAAPG--QGIVSSFVLQSD--DLDEIDWEWVGG 83 (203)
T ss_pred CccEecCCcEeECCCe--EEEEEcCCCCCCeEEeccEEEeEEEEEEEEecCC--CeEEEEEEEECC--CCCEEEEEecCC
Confidence 4567778999886433 88999776 7999999999999999999999998 899999999988 679999999997
Q ss_pred CCCCceEEEeeeecCCCC---CceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccC-CCccCCCCCCeEE
Q 023337 109 LSGDPYTLHTNVFTNGKG---DREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLES-NGVLFPKNQPMRI 184 (283)
Q Consensus 109 ~~g~~~~~~tNv~~~g~~---~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~-~g~~~P~~~Pm~l 184 (283)
++..+|+|+|.+|.. ++.+.+.++++++++||+|+|+|+|++|+|||||++++++++.+. .+..||. +||+|
T Consensus 84 ---~~~~~~tn~~~~g~~~~~~~~~~~~~~~~~~~dFHtY~veWtpd~I~~yVDG~~v~~~~~~~~~~~~~~p~-~P~~l 159 (203)
T cd02183 84 ---DLTQVQTNYFGKGNTTTYDRGGYHPVPNPQTEEFHTYTIDWTKDRITWYIDGKVVRTLTKADTTGGYGYPQ-TPMRL 159 (203)
T ss_pred ---CCCEEEeEEECCCCCCCCCCceEeeCCCCCCcCcEEEEEEEecCEEEEEECCEEEEEEehhhcccCCCCCC-CCcEE
Confidence 456899999987654 445667788888899999999999999999999999999987542 3567995 99999
Q ss_pred EeecccCCc---------cccCCCccccCCCCCCeEEEEeEEEEe
Q 023337 185 YSSLWNADD---------WATRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 185 ~lnlw~gg~---------Wat~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
++|+|+||+ || ||+ +||+.+||.|.|++|+|.
T Consensus 160 ~ln~W~gg~~~~~~g~~~Wa--Gg~--~d~~~~P~~~~vd~v~v~ 200 (203)
T cd02183 160 QIGIWAGGDPSNAPGTIEWA--GGE--TDYDKGPFTMYVKSVTVT 200 (203)
T ss_pred EEEEecCCCccccCCcccCC--CCc--cCCCCCCEEEEEEEEEEE
Confidence 999999985 98 775 699999999999999985
No 4
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=100.00 E-value=7e-38 Score=276.23 Aligned_cols=173 Identities=32% Similarity=0.646 Sum_probs=146.3
Q ss_pred eeeecCCCeEEecCCcEEEEEEec-------CCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCC---CCCcce
Q 023337 31 DITWGDGRGKILNNGQLLSLSLDK-------ASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDE 100 (283)
Q Consensus 31 ~~~w~~~nv~~~~~G~~l~l~~d~-------~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~---~~~~~E 100 (283)
..+|.++||.+. +|. |+|++.+ .++++|.|+.+|+||+||||||+|.+ +|+|+||||++. +..++|
T Consensus 26 ~~~~~~~nv~v~-~g~-L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~--~G~~~Afwl~~~~~~~~~~~E 101 (212)
T cd02175 26 NCTWSADNVEFS-DGG-LALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG--SGVVSSFFTYTGPYDGDPHDE 101 (212)
T ss_pred eeeEccccEEEE-CCe-EEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC--CeEEEEEEEEecCCCCCCCCE
Confidence 357889999986 665 8888853 35899999999999999999999987 899999999964 345799
Q ss_pred EEEEecCCCCCCceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCC
Q 023337 101 IDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQ 180 (283)
Q Consensus 101 IDiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~ 180 (283)
||||++|++. ..+++|+|.++.+.....+.+.+++.++||+|+|+|+|++|+|||||++++++...+ ..+|. +
T Consensus 102 IDiE~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~v~W~~~~i~~yvDg~~v~~~~~~~---~~~p~-~ 174 (212)
T cd02175 102 IDIEFLGKDT---TKVQFNYYTNGVGGHEKLIDLGFDASEGFHTYAFEWEPDSIRWYVDGELVHEATATD---PNIPD-T 174 (212)
T ss_pred EEEEEccCCC---CEeEEEEECCCCCCCceEEeCCCCcccccEEEEEEEeCCEEEEEECCEEEEEEcCcc---CCCCC-C
Confidence 9999999754 367888888777666667778889999999999999999999999999999987643 35786 9
Q ss_pred CeEEEeecccCC---ccccCCCccccCCCCCCeEEEEeEEEEe
Q 023337 181 PMRIYSSLWNAD---DWATRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 181 Pm~l~lnlw~gg---~Wat~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
||+|+||+|.|+ +|+ |. +|. .+|+.|+||+||+.
T Consensus 175 p~~i~~n~w~~~~~~~W~---G~--~~~-~~p~~~~vd~vr~~ 211 (212)
T cd02175 175 PGKIMMNLWPGDGVDDWL---GP--FDG-GTPLTAEYDWVSYT 211 (212)
T ss_pred CcEEEEEEEcCCCCCCcC---Cc--CCC-CCCeEEEEEEEEEe
Confidence 999999999985 598 53 466 88999999999984
No 5
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 16 GH16 from CAZY comprises enzymes with a number of known activities; lichenase (3.2.1.73 from EC); xyloglucan xyloglucosyltransferase (2.4.1.207 from EC); agarase (3.2.1.81 from EC); kappa-carrageenase (3.2.1.83 from EC); endo-beta-1,3-glucanase (3.2.1.39 from EC); endo-beta-1,3-1,4-glucanase (3.2.1.6 from EC); endo-beta-galactosidase (3.2.1.103 from EC).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DGT_A 2CL2_A 2WLQ_A 2WNE_A 2W39_A 2W52_A 3ILN_A 4DFS_A 1UMZ_A 1UN1_B ....
Probab=100.00 E-value=1.1e-35 Score=255.52 Aligned_cols=174 Identities=36% Similarity=0.665 Sum_probs=149.3
Q ss_pred cCCeeeecCCCeEEecCCcEEEEEEec-----CCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCC--CCCcce
Q 023337 28 QDFDITWGDGRGKILNNGQLLSLSLDK-----ASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP--GSTWDE 100 (283)
Q Consensus 28 ~~f~~~w~~~nv~~~~~G~~l~l~~d~-----~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~--~~~~~E 100 (283)
+.++++|.++||.+. +|..|.|++++ .++++|+|+..++||+||+|||++.+ +|+++||||.+. |+.++|
T Consensus 3 ~~~~~~~~~~nv~~~-~g~~L~L~~~~~~~~~~~sg~i~s~~~~~yG~~ear~k~~~~--~G~~~afwl~~~~~~~~~~E 79 (185)
T PF00722_consen 3 DQYNCTWSPDNVTVE-DGGNLVLRADKEPGKPYTSGEIQSKFSFKYGRFEARIKAPPG--PGVWPAFWLTGADGWPDGGE 79 (185)
T ss_dssp CTEEEEETCCGEEEE-TTSEEEEEEEEEETEEEEEEEEEESSEBSSEEEEEEEECSCS--TTEEEEEEEETTGSTTTTEE
T ss_pred CceEEeeCCCcEEEc-CCCEEEEEEEecccCceEeCEEEEcceeECcEEEEEEEecCC--CceEecccccccccccchhh
Confidence 678899999999996 44348999976 67999999999999999999998887 899999999763 689999
Q ss_pred EEEEecCCCCCCceEEEeeeecCCCCCc--eeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCC
Q 023337 101 IDFEFLGNLSGDPYTLHTNVFTNGKGDR--EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPK 178 (283)
Q Consensus 101 IDiE~lg~~~g~~~~~~tNv~~~g~~~~--~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~ 178 (283)
||||++|++.. .+++|+|..+.+.. ...+.+.+++.++||+|+|+|+|++|+|||||++++++......+.++|.
T Consensus 80 IDiE~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~y~~~W~~~~i~fyiDg~~~~~~~~~~~~~~~~P~ 156 (185)
T PF00722_consen 80 IDIEFLGNDPT---QVQTNVHWNGDGDSNWEKRVPLGFDPSTDFHTYGFEWTPDRIRFYIDGKLVRTVTNSDVPGSPYPF 156 (185)
T ss_dssp EEEEEETTSTT---EEEEEEEBTTBSCEEEEEEEETSSTTTTSEEEEEEEEETTEEEEEETTEEEEEEESSGSTTTCSSE
T ss_pred hhhhhcccccc---ceeeeeeecccCCcccceeeccccCcCCCcEEEEEEEecCeEEEEECCEEEEEEeccccccccCcc
Confidence 99999998654 59999999888765 45667788999999999999999999999999999999987655446887
Q ss_pred CCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEEE
Q 023337 179 NQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFN 218 (283)
Q Consensus 179 ~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~ 218 (283)
..||.|.+++|.+++|++..| .|+|||||
T Consensus 157 ~~~~~~~~~~w~~~~~~~~~~-----------~m~vDwvr 185 (185)
T PF00722_consen 157 STPMNLALGLWPGGDWAGPAG-----------EMEVDWVR 185 (185)
T ss_dssp EEEEEEEEEECEBTTTHSSEC-----------EEEEEEEE
T ss_pred cceeEEEEccccCCCCCCCCC-----------EEEEEeEC
Confidence 789999999999998885444 56777765
No 6
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=100.00 E-value=2.7e-33 Score=244.94 Aligned_cols=171 Identities=37% Similarity=0.597 Sum_probs=142.2
Q ss_pred eeeecCCCeEEecCCcEEEEEEec------CCCCeEEE-ccceEeEEEEEEEEecCCCCCceEEEEEecCC---CCCcce
Q 023337 31 DITWGDGRGKILNNGQLLSLSLDK------ASGSGFQS-KSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP---GSTWDE 100 (283)
Q Consensus 31 ~~~w~~~nv~~~~~G~~l~l~~d~------~sG~~i~S-k~~~~yG~~eariKlp~~~~~G~~~AFwl~~~---~~~~~E 100 (283)
...+.++||.+.++|. |.|++.+ .++++|.| ++.++||+||+|||++.+ .|+|+||||+++ ++..+|
T Consensus 24 ~~~~~~~nv~~~~~G~-L~l~~~~~~~~~~~~sg~i~s~~~~~~yG~~ear~k~~~~--~G~~~afw~~~~~~~~~~~~E 100 (210)
T cd00413 24 NMTNSPNNVYVENDGG-LTLRTDRDQTDGPYSSAEIDSQKNNYTYGYYEARAKLAGG--PGAVSAFWTYSDDDDPPDGGE 100 (210)
T ss_pred eEEECccCEEEeCCCe-EEEEEEecCCCCceEeEEEEeCcceEeeEEEEEEEEcCCC--CceEEEEEEeCCCCCCCCCCe
Confidence 3467899999976576 8888843 46789999 999999999999999988 899999999997 367999
Q ss_pred EEEEecCCCCCCceEEEeeeecCCCC-----CceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCcc
Q 023337 101 IDFEFLGNLSGDPYTLHTNVFTNGKG-----DREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVL 175 (283)
Q Consensus 101 IDiE~lg~~~g~~~~~~tNv~~~g~~-----~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~ 175 (283)
||||++|++ +..+++++|..+.+ .....+.+++++.++||+|+|+|+|++|+|||||++++++.+.
T Consensus 101 IDiE~~~~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~H~Y~~~W~~~~i~~yvDG~~~~~~~~~------ 171 (210)
T cd00413 101 IDIEFLGRD---PTTVQTNVHWPGYGAGATTGEEKSVHLPFDPADDFHTYRVDWTPGEITFYVDGVLVATITNQ------ 171 (210)
T ss_pred EEEEecccC---CCeEEEEEecCCCCcccccccceeecCCCCCccCeEEEEEEEeCCEEEEEECCEEEEEECCC------
Confidence 999999975 34678888876543 2334555667789999999999999999999999999998743
Q ss_pred CCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEE
Q 023337 176 FPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNA 219 (283)
Q Consensus 176 ~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~ 219 (283)
.|. +||+|+||+|.+++|++ . .+....|..|.|++||+
T Consensus 172 ~p~-~p~~i~ln~~~~~~~~~--~---~~~~~~~~~~~Vd~vrv 209 (210)
T cd00413 172 VPD-DPMNIILNLWSDGGWWW--G---GPPPGAPAYMEIDWVRV 209 (210)
T ss_pred CCC-CCcEEEEEEEECCCCcc--c---CCCCCCCcEEEEEEEEE
Confidence 665 99999999999999872 2 24467899999999997
No 7
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=100.00 E-value=3.7e-33 Score=253.12 Aligned_cols=178 Identities=22% Similarity=0.251 Sum_probs=136.0
Q ss_pred cCCCeEEecCCcEEEEEEec-----------CCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCC-CCCcceEE
Q 023337 35 GDGRGKILNNGQLLSLSLDK-----------ASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-GSTWDEID 102 (283)
Q Consensus 35 ~~~nv~~~~~G~~l~l~~d~-----------~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~-~~~~~EID 102 (283)
.++||.+ .+|+ |.|++.+ .++++|.||+.++||+||||||+|.+ . .+|||||++. ++.++|||
T Consensus 56 ~~~nv~v-~~G~-L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~--~-~~pAfW~~~~~~~~~gEID 130 (258)
T cd02178 56 SADNVSV-EDGN-LVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL--P-MSSAFWLLSDTKDSTTEID 130 (258)
T ss_pred ccCCeEE-ECCE-EEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC--C-ccceEEEccCCCCCCCcEE
Confidence 3577877 5786 8888742 24689999999999999999999986 3 5899999996 77899999
Q ss_pred E-EecCCCC--CCceEEEeeeecCCCC-----Cc---eeeEeecCCCCCCcEEEEEEEc-cCeEEEEeCCCeEEEEeccc
Q 023337 103 F-EFLGNLS--GDPYTLHTNVFTNGKG-----DR---EQQFHLWFDPTADFHTYSVLWN-PQRIVFYVDGSPIREFKNLE 170 (283)
Q Consensus 103 i-E~lg~~~--g~~~~~~tNv~~~g~~-----~~---~~~~~l~fd~~~dfHtY~i~Wt-p~~I~fyVDg~~vr~~~~~~ 170 (283)
| |++|++. ..+..+|+++|..+.+ .+ ...+...++..++||||+|+|+ |++|+|||||++++++.+.+
T Consensus 131 I~E~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~p~~i~fyvDG~~~~~~~~~~ 210 (258)
T cd02178 131 ILEHYGGDREEWFATRMNSNTHVFIRDPEQDYQPKDDGSWYYNPTELADDFHVYGVYWKDPDTIRFYIDGVLVRTVENSE 210 (258)
T ss_pred hhhccCCCCCccccceeeeeEEEccCCCCCCccccccceeecCCCccccCeEEEEEEEcCCCeEEEEECCEEEEEEcCcc
Confidence 8 9999763 2244788887743321 11 1234455677899999999999 99999999999999988754
Q ss_pred CCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEEe
Q 023337 171 SNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 171 ~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
. ...+|+++||+|+||+++|| |+...+.. ..-...|..|.||+|||.
T Consensus 211 ~-~~~~~f~~p~~liln~avg~-w~g~~~~~-~~~~~~p~~m~VDYVRvy 257 (258)
T cd02178 211 I-TDGTGFDQPMYIIIDTETYD-WRGEPTDE-ELADDSKNTFYVDYVRVY 257 (258)
T ss_pred c-CcCCcCCCCeEEEEEecccc-CCCCCCcc-ccCCCCCCeEEEEEEEEe
Confidence 3 33477789999999999998 98211121 122356999999999985
No 8
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=100.00 E-value=1.1e-32 Score=246.04 Aligned_cols=178 Identities=26% Similarity=0.469 Sum_probs=142.0
Q ss_pred eeecCCCeEEecCCcEEEEEEec----------CCCCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEecCC-----
Q 023337 32 ITWGDGRGKILNNGQLLSLSLDK----------ASGSGFQS--KSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP----- 94 (283)
Q Consensus 32 ~~w~~~nv~~~~~G~~l~l~~d~----------~sG~~i~S--k~~~~yG~~eariKlp~~~~~G~~~AFwl~~~----- 94 (283)
..+.++|+.+ .+|. |.|++.+ +++++|.| ++.++||+||||||+|.+ +|++|||||+++
T Consensus 33 ~~~~~~nv~v-~~G~-L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~--~G~~pafWl~~~~~~~~ 108 (235)
T cd08023 33 YTYRPENAYV-EDGN-LVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG--QGTWPAFWMLGENIKYV 108 (235)
T ss_pred EeCCCCCeEE-ECCE-EEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC--CCceeEEEEcCCCCCCC
Confidence 3567889987 4776 7887742 24678999 899999999999999988 899999999985
Q ss_pred -CCCcceEEE-EecCCCCCCceEEEeeeecCCCC----CceeeEeecC-CCCCCcEEEEEEEccCeEEEEeCCCeEEEEe
Q 023337 95 -GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNGKG----DREQQFHLWF-DPTADFHTYSVLWNPQRIVFYVDGSPIREFK 167 (283)
Q Consensus 95 -~~~~~EIDi-E~lg~~~g~~~~~~tNv~~~g~~----~~~~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 167 (283)
|+..+|||| |++|+. +..+++++|..+.. .....+.... +..++||+|+|+|+|++|+|||||+++++++
T Consensus 109 ~w~~~~EIDI~E~~g~~---~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~~~W~p~~i~~yvDG~~v~~~~ 185 (235)
T cd08023 109 GWPASGEIDIMEYVGNE---PNTVYGTLHGGATNDGNNGSGGSYTLPTDDLSDDFHTYAVEWTPDKITFYVDGKLYFTYT 185 (235)
T ss_pred CCCCCCcceeEecCCCC---CCeEEEEEECCCCCCCCCcccccEECCCCCcCCCcEEEEEEEECCEEEEEECCEEEEEEc
Confidence 467899998 999985 34688889887653 2233455554 6899999999999999999999999999998
Q ss_pred cccCCC-ccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEEe
Q 023337 168 NLESNG-VLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 168 ~~~~~g-~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
+..... ..+|+++||+|+||++++++|+ |.. ..-...|..|.||+|||.
T Consensus 186 ~~~~~~~~~~~~~~p~~liln~~~gg~w~---g~~-~~~~~~p~~~~VDyVrvy 235 (235)
T cd08023 186 NPNTDNGGQWPFDQPFYLILNLAVGGNWP---GPP-DDDTPFPATMEVDYVRVY 235 (235)
T ss_pred ccccCCcccCCCCCCcEEEEEEEEcCCCC---CCC-CCCCCCCCEEEEEEEEEC
Confidence 754321 2356679999999999999998 431 234567899999999973
No 9
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=99.98 E-value=5e-31 Score=239.90 Aligned_cols=170 Identities=27% Similarity=0.371 Sum_probs=128.1
Q ss_pred CCCeEEecCCcEEEEEEec-------------------CCCCeEEEccceEeEEEEEEEEecC-CCCCceEEEEEecCC-
Q 023337 36 DGRGKILNNGQLLSLSLDK-------------------ASGSGFQSKSEYLFGKIDMQLKLVP-GNSAGTVTAYYLKSP- 94 (283)
Q Consensus 36 ~~nv~~~~~G~~l~l~~d~-------------------~sG~~i~Sk~~~~yG~~eariKlp~-~~~~G~~~AFwl~~~- 94 (283)
++|+.+ +||+ |+|++.+ ++++++.||.+|+|||||||||+++ + .|+||||||+++
T Consensus 43 ~~Nv~v-~dG~-L~i~a~~e~~~~~~~~~~~~~~~~~~ytSg~~~t~~~~~YG~~EaRik~~p~~--~G~wpAfW~~~~~ 118 (269)
T cd02177 43 EKNVVI-SNGI-LELTMRRNANNTTFWDQQQVPDGPTYFTSGIFKSYAKGTYGYYEARIKGADIF--PGVCPSFWLYSDI 118 (269)
T ss_pred ccceEE-eCCE-EEEEEEeccCCCcccccccccCCCCCEeeEEEEecCcceeeEEEEEEECCCCC--CceEeEEEEeccC
Confidence 467776 6888 7887732 3567899999999999999999865 5 799999999974
Q ss_pred --------CCCcceEEE-EecCCC---CCC----ceEEEeeeecCCCCC--c--------eeeEeecCCCCCCcEEEEEE
Q 023337 95 --------GSTWDEIDF-EFLGNL---SGD----PYTLHTNVFTNGKGD--R--------EQQFHLWFDPTADFHTYSVL 148 (283)
Q Consensus 95 --------~~~~~EIDi-E~lg~~---~g~----~~~~~tNv~~~g~~~--~--------~~~~~l~fd~~~dfHtY~i~ 148 (283)
||.++|||| |.+|.. .++ ..++|++++.++.+. + ...+.+++|++++||+|+|+
T Consensus 119 ~~~~~~~gwp~~GEIDImE~~g~~~~~~~~~~~~~~~~H~~~~~~g~g~w~~~~~~~~~~~~~~~~~~d~~~~fH~y~v~ 198 (269)
T cd02177 119 DYSVANEGEVVYSEIDVVELQQFDWYHQDDIRDMDHNLHAIVKENGQGVWKRPKMYPPTEQLNYHRPFDPSKDFHTYGCN 198 (269)
T ss_pred CCCcccCCCCCCCeEEEEEEecCCccccccccccceEEEEeEecCCcccccCccccccccceEEccCCCCccCcEEEEEE
Confidence 688999999 887753 122 235666665554431 1 12456778899999999999
Q ss_pred EccCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCC---------ccccCCCccccCCCCCCeEEEEeEEEE
Q 023337 149 WNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNAD---------DWATRGGLIKTDWTQAPFTASYRNFNA 219 (283)
Q Consensus 149 Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg---------~Wat~gG~~~~d~~~~Pf~~~~~~~~~ 219 (283)
|+|++|+|||||++++++.+. +. .+||.+.+++-.+. .|+ |+. .+.+.+|-.|+||+|||
T Consensus 199 W~~~~i~~yvDg~~~~~~~~~------~w-~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~--~~~~~fP~~m~VDyVRv 267 (269)
T cd02177 199 VNQDEIIWYVDGVEVGRKPNK------YW-HRPMNVTLSLGLRKPFVKFFDNKNNA--KAR--EKASDFPTSMYVDYVRV 267 (269)
T ss_pred EeCCEEEEEECCEEEEEEcCC------cc-ccccEEeeccccCcchhhhhccccCC--CCC--CccCcCCceEEEEEEEE
Confidence 999999999999999998642 33 37888888875533 244 333 24677899999999998
Q ss_pred e
Q 023337 220 N 220 (283)
Q Consensus 220 ~ 220 (283)
.
T Consensus 268 ~ 268 (269)
T cd02177 268 W 268 (269)
T ss_pred e
Confidence 4
No 10
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=99.97 E-value=1.9e-30 Score=238.88 Aligned_cols=181 Identities=21% Similarity=0.222 Sum_probs=126.8
Q ss_pred eecCCCeEEecCCcEEEEEEec-------CCCCeEEE--ccceEeEEEEEEEEecCC-CCCceEEEEEecCC--------
Q 023337 33 TWGDGRGKILNNGQLLSLSLDK-------ASGSGFQS--KSEYLFGKIDMQLKLVPG-NSAGTVTAYYLKSP-------- 94 (283)
Q Consensus 33 ~w~~~nv~~~~~G~~l~l~~d~-------~sG~~i~S--k~~~~yG~~eariKlp~~-~~~G~~~AFwl~~~-------- 94 (283)
.+.++|+.+ .+|+ |+|++.+ +++++|.| |+.|+||+||||||||.+ ...|+||||||+++
T Consensus 37 ~Y~~~nv~v-~~G~-L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~~~~~~G~WPAfWmlg~~~~~~~~~ 114 (295)
T cd02180 37 WYDPDAVTT-INGS-LRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPGKPDVSGLWPAVWTMGNLGRPGYLA 114 (295)
T ss_pred EecCcCeEe-cCCe-EEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCCCCCCCCcceeeecccccccccccc
Confidence 456788877 5887 7887742 46789999 788999999999999974 23799999999983
Q ss_pred -----CCC------cceEEE-EecCCCCC-CceE---E----------------EeeeecC------CC-CCcee-eE--
Q 023337 95 -----GST------WDEIDF-EFLGNLSG-DPYT---L----------------HTNVFTN------GK-GDREQ-QF-- 132 (283)
Q Consensus 95 -----~~~------~~EIDi-E~lg~~~g-~~~~---~----------------~tNv~~~------g~-~~~~~-~~-- 132 (283)
||. .+|||| |.+|.+.. .... + |+.+|.. .. ++..+ ..
T Consensus 115 ~~~~~WP~~~~~~~~GEIDImE~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 194 (295)
T cd02180 115 TTEGVWPYSYDGRGAPEIDIIEAQVGNGLGIGQVSQSLQVAPFDAWYRPDYSSDFVTIYNDTTTIMNTYTGGVFQQAISC 194 (295)
T ss_pred cccCCCCcccccCCCCcEEEEeeecCCCCcCceEeeEEeeccccccccCCCCccceEEecCcccccccccCCcccccccc
Confidence 674 499999 99985431 1111 1 1111211 00 11111 00
Q ss_pred --eecC----CCCCCcEEEEEEEcc-----CeEEEEeCCCeEEEEecccCC--C----ccCCCCCCeEEEeecccCCccc
Q 023337 133 --HLWF----DPTADFHTYSVLWNP-----QRIVFYVDGSPIREFKNLESN--G----VLFPKNQPMRIYSSLWNADDWA 195 (283)
Q Consensus 133 --~l~f----d~~~dfHtY~i~Wtp-----~~I~fyVDg~~vr~~~~~~~~--g----~~~P~~~Pm~l~lnlw~gg~Wa 195 (283)
.++- ...++||||+|+|+| ++|+|||||+++++++..... + ..+| ++||+|+||+++||+|+
T Consensus 195 ~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~wyvDg~~~~~~~~~~~~~~~~~~~~~~~-~~P~ylILNlAvGg~w~ 273 (295)
T cd02180 195 VTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDEPTWTIYAKALGPNGNIGWRIIP-EEPMYIILNLGISSNFQ 273 (295)
T ss_pred ccccCCccccccCCCcEEEEEEEecCCCCCCEEEEEECCEEEEEEehHHcCCcccccccccC-CCCeEEEEEEEeccccC
Confidence 1111 136799999999999 899999999999999865321 1 2345 59999999999999997
Q ss_pred cCCCccccCCCCCCeEEEEeEEEEe
Q 023337 196 TRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 196 t~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
|. +.+-...|..|+||+|||.
T Consensus 274 ---g~-~~~~~~~P~~m~VDyVRVY 294 (295)
T cd02180 274 ---DI-DWDELQFPATMRIDYVRVY 294 (295)
T ss_pred ---CC-CcccCCCCCEEEEEEEEEE
Confidence 42 2345567999999999985
No 11
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=99.97 E-value=2.9e-30 Score=234.33 Aligned_cols=181 Identities=15% Similarity=0.138 Sum_probs=126.9
Q ss_pred eecCCCeEEecCCcEEEEEEec-----CCCCeEEEccceE--e----EEEEEEEEecCCC---CCceEEEEEecCC----
Q 023337 33 TWGDGRGKILNNGQLLSLSLDK-----ASGSGFQSKSEYL--F----GKIDMQLKLVPGN---SAGTVTAYYLKSP---- 94 (283)
Q Consensus 33 ~w~~~nv~~~~~G~~l~l~~d~-----~sG~~i~Sk~~~~--y----G~~eariKlp~~~---~~G~~~AFwl~~~---- 94 (283)
+.+++|+.+..+|+ |.|++.+ +++++|.|+.++. | |+||||||+|.+. ..|+||||||++.
T Consensus 42 ~~~~~n~~v~~dG~-L~I~a~~~~~~~ytSg~i~s~~~~~~~~~gg~~~~EaRik~p~~~~~~~~G~wPAfWll~~~~~~ 120 (259)
T cd02182 42 TNSTANVQLSGNGT-LQITPLRDGSGKWTSGRIETTRTDFAAPPGGKLRVEASIRLGDVPGSNQQGIWPAFWMLGDSYRG 120 (259)
T ss_pred cCCCcCEEEcCCCe-EEEEEEecCCCCEEEEEEEECCccccccCCCcEEEEEEEECCCCcccCCCCcCeeeeccCCCccC
Confidence 55678998855887 7787732 4568899976553 3 4899999999741 3699999999984
Q ss_pred ----CCCcceEEE-EecCCCCCCceEEEeeeecCC---CCCceee-Ee-ecCCCCCCcEEEEEEEcc-----CeEEEEeC
Q 023337 95 ----GSTWDEIDF-EFLGNLSGDPYTLHTNVFTNG---KGDREQQ-FH-LWFDPTADFHTYSVLWNP-----QRIVFYVD 159 (283)
Q Consensus 95 ----~~~~~EIDi-E~lg~~~g~~~~~~tNv~~~g---~~~~~~~-~~-l~fd~~~dfHtY~i~Wtp-----~~I~fyVD 159 (283)
||..+|||| |..|... . ++.++|... ....+.. .. ......++||+|+|+|++ ++|+||||
T Consensus 121 ~~~~WP~~GEIDImE~~~~~~---~-~~~t~H~~~~~~~~~~~~~~~~~~~~~~~~~fHtY~veW~~~~~~~~~I~~yvD 196 (259)
T cd02182 121 NGTNWPACGELDIMENVNGLS---T-GYGTLHCGVAPGGPCNEPTGIGAGTRLCDTGFHTYAVEIDRTNGDAESIRWYLD 196 (259)
T ss_pred CCCCCCccceeeeeeccCCCC---c-eEEEEeeCCCCCCCCccccCcccCCCCCCCCcEEEEEEEccCCCCCCEEEEEEC
Confidence 788899999 9998643 2 333455422 1111111 10 011245899999999997 99999999
Q ss_pred CCeEEEEecccCC---CccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEEEEe
Q 023337 160 GSPIREFKNLESN---GVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNFNAN 220 (283)
Q Consensus 160 g~~vr~~~~~~~~---g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~~~~ 220 (283)
|+++++++..... .-+.|+++||+|+||+++||+|+ |......-...|..|.||+|||.
T Consensus 197 G~~~~t~~~~~~~~~~~~~~~~~~p~ylIlN~avgg~w~--~~~~~~~~~~~p~~m~VDyVRVy 258 (259)
T cd02182 197 GVVYHTVTGARVGDETTWQALAHHPLFIILNVAVGGNWP--GAPNGNTATGSGSAMEVDYVAVY 258 (259)
T ss_pred CEEEEEEehhhcCCCccccCcCCCCeEEEEEEEEeCCcC--CCCCcccccCCCceEEEEEEEEe
Confidence 9999998864221 11234569999999999999998 32111112456899999999985
No 12
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=4.8e-29 Score=233.42 Aligned_cols=138 Identities=20% Similarity=0.270 Sum_probs=106.3
Q ss_pred CCCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEecCC------CCCcceEEE-EecCCCCCCc-------eEEEee
Q 023337 56 SGSGFQS--KSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP------GSTWDEIDF-EFLGNLSGDP-------YTLHTN 119 (283)
Q Consensus 56 sG~~i~S--k~~~~yG~~eariKlp~~~~~G~~~AFwl~~~------~~~~~EIDi-E~lg~~~g~~-------~~~~tN 119 (283)
++++|.| |+.|+|||||||||||.+ .|+||||||++. ||..+|||| |..|+..... ..++..
T Consensus 100 ~Sgri~T~~kf~f~YGrvE~RaKlP~G--~g~WPAfWmlp~~~~yg~WP~sGEIDImE~~Gn~~~~~~~~~~g~~~v~~t 177 (330)
T cd08024 100 MSARLRTKNSFSFKYGRVEVRAKLPTG--DWLWPAIWMLPRDNVYGGWPRSGEIDIMESRGNRPLYDGGEAIGINSVGST 177 (330)
T ss_pred EEEEEEeCCccceeceEEEEEEECCCC--CccceeeeecCCccccCCCCCCCcEEEEEEeCCCcccccccccCcceEEEE
Confidence 4577888 688999999999999998 799999999984 788999999 9999754221 246666
Q ss_pred eecCCCCC----cee---eEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEeccc-------------------CCC
Q 023337 120 VFTNGKGD----REQ---QFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLE-------------------SNG 173 (283)
Q Consensus 120 v~~~g~~~----~~~---~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~-------------------~~g 173 (283)
+|...... +.. ......+..++||+|+|+|+|++|+|||||++++++.... ..+
T Consensus 178 lH~g~~~~~~~~~~~~~~~~~~~~~~~~~FHtY~veWtpd~I~fyVDG~~~~~v~~~~~~~w~~g~~~~~~~~~~w~~~~ 257 (330)
T cd08024 178 LHWGPDPGQNRYTKTTGKRSDSGGDFADDFHTYGLDWTPDHIRFYVDDRLILTLDVPGQGFWEFGGFSGTPIDNPWAGGG 257 (330)
T ss_pred EEeCCCCCCCccccccceeccCCCCcccCCEEEEEEEeCCEEEEEECCEEEEEEecCCCCceeeccccccccCCcccccC
Confidence 77532211 111 1112235678999999999999999999999999988521 112
Q ss_pred ccCCCCCCeEEEeecccCCccc
Q 023337 174 VLFPKNQPMRIYSSLWNADDWA 195 (283)
Q Consensus 174 ~~~P~~~Pm~l~lnlw~gg~Wa 195 (283)
..+|+++|++|+||+++||.|.
T Consensus 258 ~~aPFd~~fyliLNvAVGG~~~ 279 (330)
T cd08024 258 KMAPFDQEFYLILNVAVGGTNG 279 (330)
T ss_pred cCCCCCCCEEEEEEEEecCCCC
Confidence 4579999999999999999875
No 13
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=99.96 E-value=2.7e-28 Score=227.41 Aligned_cols=135 Identities=18% Similarity=0.213 Sum_probs=100.1
Q ss_pred CCCeEEE--ccceEeEEEEEEEEecCCCCCceEEEEEecCC------C-CCcceEEE-EecCCCCC----C---ceEEEe
Q 023337 56 SGSGFQS--KSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP------G-STWDEIDF-EFLGNLSG----D---PYTLHT 118 (283)
Q Consensus 56 sG~~i~S--k~~~~yG~~eariKlp~~~~~G~~~AFwl~~~------~-~~~~EIDi-E~lg~~~g----~---~~~~~t 118 (283)
++|+|.| ++.|+|||+|+|||||.| .|+||||||++. | |..+|||| |..||... . ..++|.
T Consensus 97 ~Sari~Tk~~f~f~YGrvEvRAKlP~G--dglWPAiWmlP~~~~yg~w~P~sGEIDImE~~Gn~~~~~~g~~~~~~~l~~ 174 (321)
T cd02179 97 VSARINTKNSFAFKYGRVEIRAKLPKG--DWIYPELLLEPVNNYYGSSDYASGQIRIAFARGNAVLRADGTDIGGKKLYG 174 (321)
T ss_pred eeeeEEECCcEeEeccEEEEEEEccCC--CCcccceeecccccccCCCCCCCCeEEEEEeCCCCccccCCceeccceEEc
Confidence 4578888 577899999999999999 799999999985 3 77899999 99998521 0 113443
Q ss_pred eeecCCCC-Ccee---eEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccC----------------CCccCCC
Q 023337 119 NVFTNGKG-DREQ---QFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLES----------------NGVLFPK 178 (283)
Q Consensus 119 Nv~~~g~~-~~~~---~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~----------------~g~~~P~ 178 (283)
..|..... .+.. ......+..++||+|+|+|+|++|+|||||++++++..... ....+|+
T Consensus 175 g~~~~~~~~~~~~~~~~~~~~~~~~ddFHtY~leWtpd~I~f~VDg~~~~~~~~~~~~~~~~~~~~~~~~w~~g~~~aPF 254 (321)
T cd02179 175 GPVLTDAEPHRSANLKTKINNELWSDDFHVYTLEWKPDGITLMVDGEEYGEIEPGEGGYSEAANNPAASRWLGGTVMAPF 254 (321)
T ss_pred ccccCCCcccccccccccCCCCccccCcEEEEEEEeCCEEEEEECCEEEEEEecCcCccccccccccCccccccCccCCC
Confidence 33322111 1110 11112346789999999999999999999999999886321 1234699
Q ss_pred CCCeEEEeecccCC
Q 023337 179 NQPMRIYSSLWNAD 192 (283)
Q Consensus 179 ~~Pm~l~lnlw~gg 192 (283)
++|++|+||+++||
T Consensus 255 D~~FyliLNlAVGG 268 (321)
T cd02179 255 DKEFYLSLGVGVGG 268 (321)
T ss_pred CCCeEEEEEEEecC
Confidence 99999999999998
No 14
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=9e-25 Score=205.50 Aligned_cols=156 Identities=26% Similarity=0.450 Sum_probs=129.7
Q ss_pred eeeecCCCeEEecCCcEEEEEEe-------cCCCCeEEEccc--eEeEEEEEEEEecCCCCCceEEEEEecCC----CCC
Q 023337 31 DITWGDGRGKILNNGQLLSLSLD-------KASGSGFQSKSE--YLFGKIDMQLKLVPGNSAGTVTAYYLKSP----GST 97 (283)
Q Consensus 31 ~~~w~~~nv~~~~~G~~l~l~~d-------~~sG~~i~Sk~~--~~yG~~eariKlp~~~~~G~~~AFwl~~~----~~~ 97 (283)
+++|..+++.+..+|. |.|.++ .+++++++|..+ |+||++|+|||+|.+ .|+|+||||+++ +..
T Consensus 73 ~~~w~~~~~~lt~~~~-l~l~~~~~~~~~~~y~sG~l~T~~r~~~~YG~~Evrak~~~~--~G~wpafw~~~g~~~dg~w 149 (355)
T COG2273 73 NLTWYVSNVVLTIGGT-LELDIEKFKINDRDYRSGMLTTYNRFCFTYGTYEVRAKLPLV--SGLWPAFWTLTGLSRDGGW 149 (355)
T ss_pred ccceeecceeEeeCCe-eeeeechhcccccccccceEEecCcceEeeeEEEEEeccCCC--cccceeeEeccCcccCCCC
Confidence 3467777777765654 777774 367899999777 999999999999977 899999999984 345
Q ss_pred cceEEEEecCCCCCCceEEEeeeecCCCCCceeeEeecC-CCCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccC
Q 023337 98 WDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DPTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLF 176 (283)
Q Consensus 98 ~~EIDiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~f-d~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~ 176 (283)
++|||||++|++.. +..+++|.+.++.++.+......+ +..++||||.++|.+++|+|||||++++++... ...
T Consensus 150 p~e~d~e~lgg~~~-~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~fhty~~~W~~~~i~Wyvdg~~~~~~~~p----~~~ 224 (355)
T COG2273 150 PDEIDIEDLGGQST-NTVIQTNHYQGGGGGTSKLVDHPNPDAIDGFHTYAFLWGEDSISWYVDGAPVATATKP----DYI 224 (355)
T ss_pred CcceeeeeecCCCc-ccceEeeeeccCCCCceecccccCCCcccccccceeeccCCeEEEEEcceEeeEEecc----ccC
Confidence 68999999997643 346899999988888777777777 889999999999999999999999999998754 234
Q ss_pred CCCCCeEEEeecccCCccc
Q 023337 177 PKNQPMRIYSSLWNADDWA 195 (283)
Q Consensus 177 P~~~Pm~l~lnlw~gg~Wa 195 (283)
|. .||++++|+|.++.+.
T Consensus 225 ~~-~p~y~~~nl~~~~~~~ 242 (355)
T COG2273 225 PQ-IPFYVLVNLWMGGYAG 242 (355)
T ss_pred cC-CcceeEEeecccCccC
Confidence 76 8999999999998765
No 15
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET). Xyloglucan is the predominant hemicellulose in the cell walls of most dicotyledons. With cellulose, it forms a network that strengthens the cell wall. XET catalyses the splitting of xyloglucan chains and the linking of the newly generated reducing end to the non-reducing end of another xyloglucan chain, thereby loosening the cell wall []. ; GO: 0016762 xyloglucan:xyloglucosyl transferase activity, 0006073 cellular glucan metabolic process, 0005618 cell wall, 0048046 apoplast; PDB: 1UMZ_A 1UN1_B 2VH9_B 2UWC_A 2UWB_B 2UWA_C.
Probab=99.83 E-value=3.8e-21 Score=132.30 Aligned_cols=45 Identities=49% Similarity=1.212 Sum_probs=36.9
Q ss_pred CCCCccccC---CCHHHHHHHHHHhhcCeEeccccCCCCCCCCCCCCc
Q 023337 235 NNNPWFSQE---LDATGQERLKWVQKNYMIYNYCKDSKRFPQGLPKEC 279 (283)
Q Consensus 235 ~~~~~~~~~---l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~~~~~ec 279 (283)
+...||++. |+++|+++|+|||+||||||||.|++|||.++|+||
T Consensus 4 ~~~~w~~~~~~~L~~~q~~~m~wvr~~ymiYdYC~D~~Rfp~~~P~EC 51 (51)
T PF06955_consen 4 SSKSWWNQPYAQLSAKQRRQMRWVRRNYMIYDYCTDTKRFPNPLPPEC 51 (51)
T ss_dssp TTTSGGCSCCCS--HHHHHHHHHHHHHCEEEEGGG-TTT-SGCGSTTH
T ss_pred CCcccccCcccCCCHHHHHHHHHHHHcCeEecccCCCCcCCCCCCCCC
Confidence 345688765 999999999999999999999999999998779999
No 16
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Group of fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A. Lam16A belongs to the 'nonspecific' 1,3(4)-beta-glucanase subfamily, although beta-1,6 branching and beta-1,4 bonds specifically define where Lam16A hydrolyzes its substrates, like curdlan (beta-1,3-glucan), lichenin (beta-1,3-1,4-mixed linkage glucan), and laminarin (beta-1,6-branched-1,3-glucan).
Probab=99.69 E-value=3.2e-16 Score=143.19 Aligned_cols=169 Identities=25% Similarity=0.382 Sum_probs=108.7
Q ss_pred cccccccCCeeeec-----------------CCCeEEecCCcEEEEEEecC---------CCCeEEEccceEeEEEEEEE
Q 023337 22 SASNFYQDFDITWG-----------------DGRGKILNNGQLLSLSLDKA---------SGSGFQSKSEYLFGKIDMQL 75 (283)
Q Consensus 22 ~~~~f~~~f~~~w~-----------------~~nv~~~~~G~~l~l~~d~~---------sG~~i~Sk~~~~yG~~eari 75 (283)
.+.+|+++|++--. ..++...++|+ |.|.+|.. ++++|.||+.|.+|++|+|+
T Consensus 9 ~g~~Ffd~f~f~~~~DPT~G~V~Yv~~~~A~~~gL~~v~~g~-l~i~vd~t~~~~~~~gr~S~ri~sk~~f~~g~~~~~~ 87 (293)
T cd02181 9 DGSNFFDGFDFFTGDDPTHGFVNYVDQSTATSLGLAYVNSGN-VYLGVDSTTTLPSGAGRNSVRIESKKTYNTGLFIADI 87 (293)
T ss_pred cCCCcccCCEEcCCCCCCCeeEEEEcHHHHhhCCCeEeeCCe-EEEEEeceeccCCCCCceEEEEEEeceeecceEEEEh
Confidence 46789999986211 22233345676 88888643 24689999999999999998
Q ss_pred -EecCCCCCceEEEEEecCC-CCCcceEEE-EecCCCCCCceEEEeee----ecCC--CC-------------Cce----
Q 023337 76 -KLVPGNSAGTVTAYYLKSP-GSTWDEIDF-EFLGNLSGDPYTLHTNV----FTNG--KG-------------DRE---- 129 (283)
Q Consensus 76 -Klp~~~~~G~~~AFwl~~~-~~~~~EIDi-E~lg~~~g~~~~~~tNv----~~~g--~~-------------~~~---- 129 (283)
|||.+ .|+||||||++. ||..+|||| |.++.......++||.- -..+ .+ +..
T Consensus 88 ~~~P~g--~G~WPAfW~~g~~WP~~GEIDImE~vn~~~~n~~tlHt~~gC~i~~~~~~tg~~~~~nC~~~~~~n~GC~v~ 165 (293)
T cd02181 88 AHMPGG--CGTWPAFWTVGPNWPNGGEIDIIEGVNLQTSNQMTLHTGPGCTISNSGSFTGTVTTTNCDVNQNGNAGCGVT 165 (293)
T ss_pred hhCCCC--CCccchhhhcCCCCCCCCcEEEEeccCCCCceEEEEecCCCEEcCCCCCccCcccCCCcCCCCCCCCCceee
Confidence 99987 899999999987 999999999 99986443333555521 0000 00 000
Q ss_pred ----eeEeecCCCCCCcEEEEEEEccCeEEEEeC---CCeEEEEecccC-------CCccCCCC--------CCeEEEee
Q 023337 130 ----QQFHLWFDPTADFHTYSVLWNPQRIVFYVD---GSPIREFKNLES-------NGVLFPKN--------QPMRIYSS 187 (283)
Q Consensus 130 ----~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVD---g~~vr~~~~~~~-------~g~~~P~~--------~Pm~l~ln 187 (283)
..+-..|+ ..+=-.|++||+++.|+.+.- .+|- .+..... +-..||.. ++++|++|
T Consensus 166 ~~~~~syG~~FN-~~GGGvyA~ew~~~~I~vWff~R~~iP~-di~~~~pdPs~WG~P~A~f~~~~Cdi~~~F~~~~iVfn 243 (293)
T cd02181 166 STSTNSYGAGFN-AAGGGVYAMEWTSDGIKVWFFPRGSIPA-DITSGSPDPSTWGTPAASFPGSSCDIDSFFKDQRIVFD 243 (293)
T ss_pred cCCCCccccccc-cCCCcEEEEEEccCcEEEEEecCCCCCc-ccccCCCCCcccCcccccCCCCCCChhHhcccCEEEEE
Confidence 01111222 223369999999999986653 2222 1221111 11234421 78899999
Q ss_pred cccCCccc
Q 023337 188 LWNADDWA 195 (283)
Q Consensus 188 lw~gg~Wa 195 (283)
+--=|+||
T Consensus 244 ~tfCGdwA 251 (293)
T cd02181 244 TTFCGDWA 251 (293)
T ss_pred eecccccc
Confidence 98889999
No 17
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=99.65 E-value=1.2e-15 Score=147.86 Aligned_cols=177 Identities=23% Similarity=0.338 Sum_probs=118.8
Q ss_pred CCCeEEecCCcEEEEEEec-------CCCCeEEE--ccceEeEEEEEEEEecCCC-CCceEEEEEecCC-----------
Q 023337 36 DGRGKILNNGQLLSLSLDK-------ASGSGFQS--KSEYLFGKIDMQLKLVPGN-SAGTVTAYYLKSP----------- 94 (283)
Q Consensus 36 ~~nv~~~~~G~~l~l~~d~-------~sG~~i~S--k~~~~yG~~eariKlp~~~-~~G~~~AFwl~~~----------- 94 (283)
++.|.. .+|. |+|++++ +.+++++| |+-|.-|++|++++||... ..|+|||||++++
T Consensus 160 p~~vtt-~~G~-l~i~~~~~~~~~~~y~sgm~qsWNkfCftgG~~e~~~~lPg~~~~~G~WP~~W~mGNLgRagy~ast~ 237 (504)
T PF03935_consen 160 PDAVTT-ENGS-LVITLDAFPNHNLNYRSGMLQSWNKFCFTGGYIEVSASLPGSPDVSGLWPAFWTMGNLGRAGYGASTD 237 (504)
T ss_pred CCCcEe-eCCE-EEEEEEeeeccceeEecchhhhhhhhhcCCcEEEEEEECCCCCcCCCcCchhhhccccCccccccccC
Confidence 444544 6786 8888864 34678888 8888999999999998753 5799999999974
Q ss_pred --CC---------------------------------------------CcceEEE-EecCCCCC-Cce---EEEe----
Q 023337 95 --GS---------------------------------------------TWDEIDF-EFLGNLSG-DPY---TLHT---- 118 (283)
Q Consensus 95 --~~---------------------------------------------~~~EIDi-E~lg~~~g-~~~---~~~t---- 118 (283)
|| ...|||| |....... ... .+|.
T Consensus 238 g~WPySYd~Cd~g~~~nQt~~~glS~lpgqrlsaCtc~gedhp~p~~GRgAPEIDilE~~~~~~~~~g~~SqS~Q~AP~d 317 (504)
T PF03935_consen 238 GMWPYSYDSCDVGTTPNQTSPDGLSYLPGQRLSACTCPGEDHPGPGVGRGAPEIDILEAQVGAGPGVGVVSQSLQVAPFD 317 (504)
T ss_pred ceecccccccCcccccCccccCccccCCCCcCcCCCCCCCcCCCCCCCCCCCceeEEeeeecccccccccccceeecccc
Confidence 21 1239998 87543211 001 1111
Q ss_pred ----------eeecCCC-------CCceee-E----ee---cC--CCCCCcEEEEEEEcc-----CeEEEEeCCCeEEEE
Q 023337 119 ----------NVFTNGK-------GDREQQ-F----HL---WF--DPTADFHTYSVLWNP-----QRIVFYVDGSPIREF 166 (283)
Q Consensus 119 ----------Nv~~~g~-------~~~~~~-~----~l---~f--d~~~dfHtY~i~Wtp-----~~I~fyVDg~~vr~~ 166 (283)
.+|.... |+.-|+ + .+ ++ ....+||+|++||.| ..|+|+|||+++.++
T Consensus 318 ~~y~~~~~~~~i~~~~~T~~N~Y~Gg~~QqAiSa~t~ln~~~Y~~~~~~~f~~YgfEy~Pg~~~~GYItW~vdg~~twti 397 (504)
T PF03935_consen 318 IWYRPDYDFYEIYNPSITQMNTYTGGVYQQAISALTQLNNDWYEEEDGGCFQTYGFEYKPGDGDDGYITWFVDGEPTWTI 397 (504)
T ss_pred cCCCCCCCceEEeCCCCceeccccChhhhhhhhcCcccCccccccCCCCceEEEEEEEEeCCCCCeEEEEEECCEEEEEE
Confidence 0110000 011111 0 01 11 123789999999987 499999999999998
Q ss_pred ecccCC------CccCCCCCCeEEEeecccCCccccCCCccccCCCC--CCeEEEEeEEEEeE
Q 023337 167 KNLESN------GVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQ--APFTASYRNFNANA 221 (283)
Q Consensus 167 ~~~~~~------g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~--~Pf~~~~~~~~~~~ 221 (283)
...... .-.+|. .||+|++|+....+|+ .+||.+ .|..|.||+|||..
T Consensus 398 ~a~Al~~~~~I~~R~Ip~-EPMyIIlNlgmS~sf~------~vd~~~L~FP~~M~IDYVRVYQ 453 (504)
T PF03935_consen 398 NAEALGPNPNIGQRPIPE-EPMYIILNLGMSSSFG------YVDWNHLCFPATMRIDYVRVYQ 453 (504)
T ss_pred EhhhcCCCCCcCccccCc-CCceeeeccccccccC------ccccccccccceEEEeEEEEec
Confidence 865321 135786 9999999999999996 357764 78899999999963
No 18
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=93.21 E-value=1.3 Score=37.20 Aligned_cols=120 Identities=17% Similarity=0.323 Sum_probs=62.6
Q ss_pred ecCCcEEEEEE--ecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEEEecCC-------CCCcceEEEEecCCCCCC
Q 023337 42 LNNGQLLSLSL--DKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAYYLKSP-------GSTWDEIDFEFLGNLSGD 112 (283)
Q Consensus 42 ~~~G~~l~l~~--d~~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AFwl~~~-------~~~~~EIDiE~lg~~~g~ 112 (283)
..||. |. .. ....++.+.++..|.-..+++++|+.++ | -+++++-.. +...-|+.|.--+.....
T Consensus 28 v~dG~-l~-~~~~~~~~~~~l~~~~~~~df~l~~d~k~~~~---~-~sGi~~r~~~~~~~~~~~~gy~~~i~~~~~~~~~ 101 (185)
T PF06439_consen 28 VKDGV-LV-SNGSSGSGGGYLYTDKKFSDFELEVDFKITPG---G-NSGIFFRAQSPGDGQDWNNGYEFQIDNSGGGTGL 101 (185)
T ss_dssp EETTE-EE--GGGGESSS--EEESSEBSSEEEEEEEEE-TT-----EEEEEEEESSECCSSGGGTSEEEEEE-TTTCSTT
T ss_pred eeCCE-EE-ecccCCCCcceEEECCccccEEEEEEEEECCC---C-CeEEEEEeccccCCCCcceEEEEEEECCCCccCC
Confidence 46785 33 11 2234567888888888899999998544 2 333333221 345567777332211000
Q ss_pred ceEEEeeeecCCCCCceeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEecc
Q 023337 113 PYTLHTNVFTNGKGDREQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFKNL 169 (283)
Q Consensus 113 ~~~~~tNv~~~g~~~~~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~ 169 (283)
+ .....++.. .............+..+||++.|.-..++|+.+|||++|-++...
T Consensus 102 ~-~~~G~~~~~-~~~~~~~~~~~~~~~~~W~~~~I~~~g~~i~v~vnG~~v~~~~d~ 156 (185)
T PF06439_consen 102 P-NSTGSLYDE-PPWQLEPSVNVAIPPGEWNTVRIVVKGNRITVWVNGKPVADFTDP 156 (185)
T ss_dssp T-TSTTSBTTT-B-TCB-SSS--S--TTSEEEEEEEEETTEEEEEETTEEEEEEETT
T ss_pred C-CccceEEEe-ccccccccccccCCCCceEEEEEEEECCEEEEEECCEEEEEEEcC
Confidence 0 000001100 000000011112357899999999999999999999999888754
No 19
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=93.04 E-value=4 Score=32.86 Aligned_cols=71 Identities=10% Similarity=0.151 Sum_probs=44.7
Q ss_pred CCCCcEEEEEEEcc--CeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEe
Q 023337 138 PTADFHTYSVLWNP--QRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYR 215 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~ 215 (283)
+...||...+.++. .+|++||||+++.+.... ..+...|+.+-..... ++ ....+|.-.++
T Consensus 59 ~~~~W~hva~v~d~~~g~~~lYvnG~~~~~~~~~-----~~~~~~~~~iG~~~~~-------~~-----~~~~~f~G~Id 121 (133)
T smart00560 59 WIGVWVHLAGVYDGGAGKLSLYVNGVEVATSETQ-----PSPSSGNLPQGGRILL-------GG-----AGGENFSGRLD 121 (133)
T ss_pred CCCCEEEEEEEEECCCCeEEEEECCEEccccccC-----CcccCCceEEeeeccC-------CC-----CCCCCceEEee
Confidence 34789999999988 799999999988653321 1222234333211111 11 12358999999
Q ss_pred EEEEeEEeeC
Q 023337 216 NFNANACVWS 225 (283)
Q Consensus 216 ~~~~~~c~~~ 225 (283)
.++|..+..+
T Consensus 122 evriy~~aLs 131 (133)
T smart00560 122 EVRVYNRALT 131 (133)
T ss_pred EEEEeccccC
Confidence 9999776543
No 20
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A ....
Probab=92.99 E-value=2.8 Score=33.07 Aligned_cols=65 Identities=14% Similarity=0.334 Sum_probs=37.9
Q ss_pred CCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEeEE
Q 023337 138 PTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYRNF 217 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~~~ 217 (283)
+...||..++.|..+.+.+||||+++.+...... ...+...++. + |+. .....+|...++.+
T Consensus 83 ~~~~W~~l~~~~~~~~~~lyvnG~~~~~~~~~~~--~~~~~~~~~~--i----G~~----------~~~~~~~~g~i~~~ 144 (157)
T PF13385_consen 83 PDNKWHHLALTYDGSTVTLYVNGELVGSSTIPSN--ISLNSNGPLF--I----GGS----------GGGSSPFNGYIDDL 144 (157)
T ss_dssp -TT-EEEEEEEEETTEEEEEETTEEETTCTEESS--SSTTSCCEEE--E----SS-----------STT--B-EEEEEEE
T ss_pred CCCCEEEEEEEEECCeEEEEECCEEEEeEeccCC--cCCCCcceEE--E----eec----------CCCCCceEEEEEEE
Confidence 3589999999999999999999998754332111 0011112222 1 111 12356899999999
Q ss_pred EEe
Q 023337 218 NAN 220 (283)
Q Consensus 218 ~~~ 220 (283)
++.
T Consensus 145 ~i~ 147 (157)
T PF13385_consen 145 RIY 147 (157)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
No 21
>smart00210 TSPN Thrombospondin N-terminal -like domains. Heparin-binding and cell adhesion domain of thrombospondin
Probab=91.28 E-value=4.6 Score=34.57 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=51.4
Q ss_pred EEEEEEEecCCCCCceEEEEEecCCCCCcceEEEEecCCCCCCceEEEeeeecCCCCCceeeEeec-C-CCCCCcEEEEE
Q 023337 70 KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLW-F-DPTADFHTYSV 147 (283)
Q Consensus 70 ~~eariKlp~~~~~G~~~AFwl~~~~~~~~EIDiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~-f-d~~~dfHtY~i 147 (283)
.+.+.+|..+. +.|+.-++.-. + ...++-++.-|.. + .+. ++..+..+..+..... . -....||..++
T Consensus 55 si~~~~r~~~~-~~g~L~si~~~-~--~~~~l~v~l~g~~---~-~~~--~~~~~~~g~~~~~~f~~~~l~dg~WH~lal 124 (184)
T smart00210 55 SLLTTFRQTPK-SRGVLFAIYDA-Q--NVRQFGLEVDGRA---N-TLL--LRYQGVDGKQHTVSFRNLPLADGQWHKLAL 124 (184)
T ss_pred EEEEEEEeCCC-CCeEEEEEEcC-C--CcEEEEEEEeCCc---c-EEE--EEECCCCCcEEEEeecCCccccCCceEEEE
Confidence 46677776543 35666555432 2 3345555655532 1 233 2222333333322211 1 23678999999
Q ss_pred EEccCeEEEEeCCCeEEEEe
Q 023337 148 LWNPQRIVFYVDGSPIREFK 167 (283)
Q Consensus 148 ~Wtp~~I~fyVDg~~vr~~~ 167 (283)
.+..+++++|||++++.+..
T Consensus 125 ~V~~~~v~LyvDC~~~~~~~ 144 (184)
T smart00210 125 SVSGSSATLYVDCNEIDSRP 144 (184)
T ss_pred EEeCCEEEEEECCcccccee
Confidence 99999999999999987653
No 22
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family. This family form a doscoid pentameric structure. Human serum amyloid P demonstrates calcium-mediated ligand-binding.
Probab=89.86 E-value=13 Score=32.46 Aligned_cols=72 Identities=19% Similarity=0.294 Sum_probs=41.9
Q ss_pred CCCCcEEEEEEEc--cCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEe
Q 023337 138 PTADFHTYSVLWN--PQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYR 215 (283)
Q Consensus 138 ~~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~ 215 (283)
...+||...+.|+ ..++.+||||+++. ...-..+..++ .+..|.|.-- .+.+ ||. .+ ....|.-.++
T Consensus 88 ~~g~W~hvc~tw~~~~g~~~lyvnG~~~~--~~~~~~g~~i~--~~G~lvlGq~-qd~~---gg~--f~-~~~~f~G~i~ 156 (206)
T smart00159 88 SDGKWHHICTTWESSSGIAELWVDGKPGV--RKGLAKGYTVK--PGGSIILGQE-QDSY---GGG--FD-ATQSFVGEIG 156 (206)
T ss_pred cCCceEEEEEEEECCCCcEEEEECCEEcc--cccccCCcEEC--CCCEEEEEec-ccCC---CCC--CC-CCcceeEEEe
Confidence 4678999999997 45799999998862 11111222232 2334444431 1222 332 13 2346888888
Q ss_pred EEEEe
Q 023337 216 NFNAN 220 (283)
Q Consensus 216 ~~~~~ 220 (283)
+|++.
T Consensus 157 ~v~iw 161 (206)
T smart00159 157 DLNMW 161 (206)
T ss_pred eeEEe
Confidence 88874
No 23
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets. It binds to lectins with high affinity helping to target the protein to sialic acid-rich environments, thereby enhancing the catalytic efficiency of the enzyme []. ; PDB: 1W0P_A 1W0O_A 1KIT_A 2W68_B.
Probab=86.39 E-value=1.2 Score=38.57 Aligned_cols=102 Identities=23% Similarity=0.368 Sum_probs=54.7
Q ss_pred ecCCCCeEEEccce---EeE-EEEEEEEecCCCCCceEEEEEecCCCCCcceEEEEecCCCCCCceEEEeeeecCCCCCc
Q 023337 53 DKASGSGFQSKSEY---LFG-KIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDR 128 (283)
Q Consensus 53 d~~sG~~i~Sk~~~---~yG-~~eariKlp~~~~~G~~~AFwl~~~~~~~~EIDiE~lg~~~g~~~~~~tNv~~~g~~~~ 128 (283)
.-..|+++-|++.- .+| +....+|+..| |...-.+.-+. ..--++|-.-. .|+ +-.++ .|.+.+
T Consensus 14 ~gw~gse~ys~~~~~~S~~gW~ls~~~RV~~G---~~n~~yyAnG~--~r~l~~lsvn~--sG~---LvA~L--~g~ss~ 81 (198)
T PF09264_consen 14 AGWGGSELYSKQTELNSQQGWSLSWESRVVSG---GCNTNYYANGS--KRYLPILSVNE--SGS---LVAEL--EGQSSN 81 (198)
T ss_dssp EETTEEEEECCCHHHHCCC-EEEEEEEEEEEE---S-EEEEEEESS--EEEEEEEEE-T--TS----EEEEE--TTS-S-
T ss_pred eccccchhhhhhhhhhhhcCcceeeeEEEecC---cceeEEEcCCc--eEEEEEEEEcC--CCC---EEEEE--ecCCCc
Confidence 34677888776543 377 78888888776 55554444332 22223332211 111 11111 122222
Q ss_pred eeeEeecCCCCCCcEEEEEEEcc--CeEEEEeCCCeEEEEe
Q 023337 129 EQQFHLWFDPTADFHTYSVLWNP--QRIVFYVDGSPIREFK 167 (283)
Q Consensus 129 ~~~~~l~fd~~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~ 167 (283)
..+.+......+||.|.|.-.| ..-.|||||++|++..
T Consensus 82 -~~~~~~~~di~gyH~Y~i~~~p~~~tASfy~DG~lI~tw~ 121 (198)
T PF09264_consen 82 -TLLATTGADIHGYHKYEIVFSPLTNTASFYFDGTLIATWS 121 (198)
T ss_dssp -EEEE-CHHHHCSEEEEEEEEETTTTEEEEEETTEEEEEE-
T ss_pred -EEEecccccccceeEEEEEecCCCCceEEEECCEEEeecc
Confidence 1222221113589999999987 8999999999999753
No 24
>PF10287 DUF2401: Putative TOS1-like glycosyl hydrolase (DUF2401); InterPro: IPR018805 This entry represents a family of proteins conserved primarily in fungi. One member is annotated putatively as OPEL, a house-keeping protein, but this could not be confirmed. It contains 5 highly conserved cysteines two of which form a characteristic CGC sequence motif.
Probab=85.34 E-value=3.7 Score=36.88 Aligned_cols=77 Identities=17% Similarity=0.264 Sum_probs=48.0
Q ss_pred EEEEEEEecCCC-----CCceEEEEEecCC---------------CC-CcceEEE-EecCCCCCCceEEEeeeec-CCC-
Q 023337 70 KIDMQLKLVPGN-----SAGTVTAYYLKSP---------------GS-TWDEIDF-EFLGNLSGDPYTLHTNVFT-NGK- 125 (283)
Q Consensus 70 ~~eariKlp~~~-----~~G~~~AFwl~~~---------------~~-~~~EIDi-E~lg~~~g~~~~~~tNv~~-~g~- 125 (283)
-|-.+++||... ...=.||+||++. |. ..+|.|| |.|.... . .+-+.+|. +|.
T Consensus 102 ~Flfef~MP~~~~~~~~~~~DmPAIWlLNA~IpRT~QY~~~~CSCW~sGCGEfDifEVl~~g~--~-k~~St~H~~qG~~ 178 (235)
T PF10287_consen 102 MFLFEFSMPHETDGGSGFNYDMPAIWLLNAQIPRTSQYGNAGCSCWKSGCGEFDIFEVLNSGD--D-KLKSTFHDYQGTD 178 (235)
T ss_pred EEEEEEECCCCcCCCCCCCCCcChhHhccccCcchhhcCCCCCCccCCCcccceeeeeccCCC--c-eeEEEEecccCcc
Confidence 477888888832 2356899999974 43 6899998 9997633 2 34444554 332
Q ss_pred -----CCceeeEeecCCCCCCcEEEEEEEccC
Q 023337 126 -----GDREQQFHLWFDPTADFHTYSVLWNPQ 152 (283)
Q Consensus 126 -----~~~~~~~~l~fd~~~dfHtY~i~Wtp~ 152 (283)
++...-+. -|++..-++++.++.+
T Consensus 179 ~~~~g~G~~~yf~---RPt~~~~k~aVifd~~ 207 (235)
T PF10287_consen 179 DINGGGGSSDYFK---RPTSGTMKVAVIFDSS 207 (235)
T ss_pred ccCCCCCCCCccc---CCCCCCeEEEEEEcCC
Confidence 11111111 2567888888888643
No 25
>cd00152 PTX Pentraxins are plasma proteins characterized by their pentameric discoid assembly and their Ca2+ dependent ligand binding, such as Serum amyloid P component (SAP) and C-reactive Protein (CRP), which are cytokine-inducible acute-phase proteins implicated in innate immunity. CRP binds to ligands containing phosphocholine, SAP binds to amyloid fibrils, DNA, chromatin, fibronectin, C4-binding proteins and glycosaminoglycans. "Long" pentraxins have N-terminal extensions to the common pentraxin domain; one group, the neuronal pentraxins, may be involved in synapse formation and remodeling, and they may also be able to form heteromultimers.
Probab=80.83 E-value=36 Score=29.37 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=41.7
Q ss_pred CCCCcEEEEEEEc--cCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEe
Q 023337 138 PTADFHTYSVLWN--PQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYR 215 (283)
Q Consensus 138 ~~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~ 215 (283)
....||...+.|+ ..++.+||||+++.+-. -..+..++. ...|.|.--- . .-||. .+. ...|.-.++
T Consensus 88 ~~g~W~hv~~t~d~~~g~~~lyvnG~~~~~~~--~~~~~~~~~--~g~l~lG~~q-~---~~gg~--~~~-~~~f~G~I~ 156 (201)
T cd00152 88 SDGAWHHICVTWESTSGIAELWVNGKLSVRKS--LKKGYTVGP--GGSIILGQEQ-D---SYGGG--FDA-TQSFVGEIS 156 (201)
T ss_pred CCCCEEEEEEEEECCCCcEEEEECCEEecccc--ccCCCEECC--CCeEEEeecc-c---CCCCC--CCC-CcceEEEEc
Confidence 5778999999997 45799999999875322 111222332 2233333210 0 11332 132 347888888
Q ss_pred EEEEe
Q 023337 216 NFNAN 220 (283)
Q Consensus 216 ~~~~~ 220 (283)
+|++.
T Consensus 157 ~v~iw 161 (201)
T cd00152 157 DVNMW 161 (201)
T ss_pred eeEEE
Confidence 88874
No 26
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=79.69 E-value=29 Score=27.52 Aligned_cols=84 Identities=18% Similarity=0.157 Sum_probs=47.8
Q ss_pred EeEEEEEEEEecCCCCCceEEEEEecCCCCCcceEEEEecCCCCCCceEEEeeeecCCCCCceeeEeecC-CCCCCcEEE
Q 023337 67 LFGKIDMQLKLVPGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFHLWF-DPTADFHTY 145 (283)
Q Consensus 67 ~yG~~eariKlp~~~~~G~~~AFwl~~~~~~~~EIDiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~l~f-d~~~dfHtY 145 (283)
....+++++|.... .|+. |++-+. ...+-+-+|.... .++..+.. | .....+.... -....||..
T Consensus 20 ~~~~i~~~frt~~~--~g~l--~~~~~~-~~~~~~~l~l~~g------~l~~~~~~-g--~~~~~~~~~~~v~dg~Wh~v 85 (151)
T cd00110 20 TRLSISFSFRTTSP--NGLL--LYAGSQ-NGGDFLALELEDG------RLVLRYDL-G--SGSLVLSSKTPLNDGQWHSV 85 (151)
T ss_pred ceeEEEEEEEeCCC--CeEE--EEecCC-CCCCEEEEEEECC------EEEEEEcC-C--cccEEEEccCccCCCCEEEE
Confidence 45567777776554 5655 333222 1345555666532 23322222 2 2222333321 236689999
Q ss_pred EEEEccCeEEEEeCCCeEE
Q 023337 146 SVLWNPQRIVFYVDGSPIR 164 (283)
Q Consensus 146 ~i~Wtp~~I~fyVDg~~vr 164 (283)
.|.+....++++|||.+.-
T Consensus 86 ~i~~~~~~~~l~VD~~~~~ 104 (151)
T cd00110 86 SVERNGRSVTLSVDGERVV 104 (151)
T ss_pred EEEECCCEEEEEECCccEE
Confidence 9999999999999998543
No 27
>PF14099 Polysacc_lyase: Polysaccharide lyase; PDB: 3ILR_A 3IKW_A 3INA_A 3IMN_A 3IN9_A 2ZZJ_A.
Probab=77.77 E-value=20 Score=31.13 Aligned_cols=71 Identities=11% Similarity=0.352 Sum_probs=41.2
Q ss_pred CCCCCcEEEEE--EEcc---CeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeE
Q 023337 137 DPTADFHTYSV--LWNP---QRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFT 211 (283)
Q Consensus 137 d~~~dfHtY~i--~Wtp---~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~ 211 (283)
.+...||.+.| .|.+ ..|..++||+++..+.... .++.....++-+.|.-.+ |.+..+. .+-.
T Consensus 149 ~~~G~W~~~~i~~~~s~~~~G~~~vw~nG~~v~~~~g~~----~~~~~~~~y~K~GiYr~~-~~~~~~~-------~~~~ 216 (224)
T PF14099_consen 149 VERGKWHDFVIHVKWSPDSDGFLEVWLNGKLVVDYKGPT----GYNDDRGPYFKFGIYRSG-WKNDPNE-------SDTQ 216 (224)
T ss_dssp S-TTSEEEEEEEEEE-CCCTEEEEEEECCEECCEEEEEE----CECCSSEEEEEEEEEEHC-CHHHSC---------SS-
T ss_pred cCCCcEEEEEEEEEECCCCCEEEEEEECCEEEEEEeCCc----eeCCCCcceeEEEEECCC-CcCCCcc-------cccE
Confidence 34588998876 5764 7899999999998877522 133235666666665433 1111111 1111
Q ss_pred EEEeEEEE
Q 023337 212 ASYRNFNA 219 (283)
Q Consensus 212 ~~~~~~~~ 219 (283)
++||+|++
T Consensus 217 vy~D~v~~ 224 (224)
T PF14099_consen 217 VYYDNVRI 224 (224)
T ss_dssp EEEEEEE-
T ss_pred EEeccccC
Confidence 88998874
No 28
>KOG1834 consensus Calsyntenin [Extracellular structures]
Probab=76.19 E-value=14 Score=38.08 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=39.1
Q ss_pred CCCCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccc
Q 023337 138 PTADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWA 195 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wa 195 (283)
...+||.|.+.-.=-.++.||||+-..-..- -.+||- .|.++-..|-+|-=|.
T Consensus 440 CD~EWH~Y~ln~efp~VtlyvDG~Sfep~~i----~ddwpl-Hpsk~~tqLvVGACW~ 492 (952)
T KOG1834|consen 440 CDNEWHHYVLNVEFPDVTLYVDGKSFEPPLI----TDDWPL-HPSKIETQLVVGACWQ 492 (952)
T ss_pred hhhhhheeEEeecCceEEEEEcCcccCCcee----ccCCcc-CcccccceeEEeeecc
Confidence 4689999999997555999999975532111 135887 7777777777787787
No 29
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=67.61 E-value=24 Score=28.94 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=17.2
Q ss_pred cCCCeEEecCCcEEEEEEecCCCCe
Q 023337 35 GDGRGKILNNGQLLSLSLDKASGSG 59 (283)
Q Consensus 35 ~~~nv~~~~~G~~l~l~~d~~sG~~ 59 (283)
..+++.+...|..+.+.-|...|++
T Consensus 33 ~qs~~qv~g~G~V~~vLpdd~~Gsr 57 (131)
T PF11948_consen 33 QQSDVQVSGCGTVVKVLPDDNKGSR 57 (131)
T ss_pred hccCeeEeccEEEEEECcccCCCCc
Confidence 4567888777875555547777776
No 30
>PF00354 Pentaxin: Pentaxin family; InterPro: IPR001759 Pentaxins (or pentraxins) [, ] are a family of proteins which show, under electron microscopy, a discoid arrangement of five noncovalently bound subunits. Proteins of the pentaxin family are involved in acute immunological responses []. Three of the principal members of the pentaxin family are serum proteins: namely, C-reactive protein (CRP) [], serum amyloid P component protein (SAP) [], and female protein (FP) []. CRP is expressed during acute phase response to tissue injury or inflammation in mammals. The protein resembles antibody and performs several functions associated with host defence: it promotes agglutination, bacterial capsular swelling and phagocytosis, and activates the classical complement pathway through its calcium-dependent binding to phosphocholine. CRPs have also been sequenced in an invertebrate, Limulus polyphemus (Atlantic horseshoe crab), where they are a normal constituent of the hemolymph. SAP is a vertebrate protein that is a precursor of amyloid component P. It is found in all types of amyloid deposits, in glomerular basement menbrane and in elastic fibres in blood vessels. SAP binds to various lipoprotein ligands in a calcium-dependent manner, and it has been suggested that, in mammals, this may have important implications in atherosclerosis and amyloidosis. FP is a SAP homologue found in Mesocricetus auratus (Golden hamster). The concentration of this plasma protein is altered by sex steroids and stimuli that elicit an acute phase response. Pentaxin proteins expressed in the nervous system are neural pentaxin I (NPI) and II (NPII) []. NPI and NPII are homologous and can exist within one species. It is suggested that both proteins mediate the uptake of synaptic macromolecules and play a role in synaptic plasticity. Apexin, a sperm acrosomal protein, is a homologue of NPII found in Cavia porcellus (Guinea pig) []. PTX3 (or TSG-14) protein is a cytokine-induced protein that is homologous to CRPs and SAPs, but its function is not yet known.; PDB: 2A3W_F 3KQR_C 3D5O_D 2A3X_G 1SAC_D 2W08_B 1GYK_B 1LGN_A 2A3Y_A 1B09_D ....
Probab=58.60 E-value=1.1e+02 Score=26.48 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=44.4
Q ss_pred CCCCcEEEEEEEcc--CeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCCCCeEEEEe
Q 023337 138 PTADFHTYSVLWNP--QRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQAPFTASYR 215 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp--~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~~Pf~~~~~ 215 (283)
....||.+-+-|+. ..+.+|+||+....-. -..+...|. -..++|.--- + .-||.. | ..-.|.-.+.
T Consensus 82 ~~~~Whh~C~tW~s~~G~~~ly~dG~~~~~~~--~~~g~~i~~--gG~~vlGQeQ-d---~~gG~f--d-~~q~F~G~i~ 150 (195)
T PF00354_consen 82 RDGQWHHICVTWDSSTGRWQLYVDGVRLSSTG--LATGHSIPG--GGTLVLGQEQ-D---SYGGGF--D-ESQAFVGEIS 150 (195)
T ss_dssp -TSS-EEEEEEEETTTTEEEEEETTEEEEEEE--SSTT--B-S--SEEEEESS-B-S---BTTBTC--S-GGGB--EEEE
T ss_pred CCCCcEEEEEEEecCCcEEEEEECCEeccccc--ccCCceECC--CCEEEECccc-c---ccCCCc--C-CccEeeEEEe
Confidence 46899999999965 7999999999543211 123333432 2334444321 1 123421 3 3357888888
Q ss_pred EEEEeEEeeCCCCCcCCCCCCCCccccCCCHHHHHHHH
Q 023337 216 NFNANACVWSNGKSSCNSKNNNPWFSQELDATGQERLK 253 (283)
Q Consensus 216 ~~~~~~c~~~~~~~~C~~~~~~~~~~~~l~~~~~~~~~ 253 (283)
+|++- ++.|++.|+++|.
T Consensus 151 ~~~iW--------------------d~vLs~~eI~~l~ 168 (195)
T PF00354_consen 151 DFNIW--------------------DRVLSPEEIRALA 168 (195)
T ss_dssp EEEEE--------------------SS---HHHHHHHH
T ss_pred ceEEE--------------------eeeCCHHHHHHHH
Confidence 88862 4567777776664
No 31
>PF09224 DUF1961: Domain of unknown function (DUF1961); InterPro: IPR015305 Members of this family are found in a set of hypothetical bacterial proteins. Their exact function has not, as yet, been determined. ; PDB: 1OQ1_C.
Probab=56.93 E-value=40 Score=29.96 Aligned_cols=59 Identities=27% Similarity=0.457 Sum_probs=36.4
Q ss_pred CCcEEEEEEEccCeEEEEeCCCeEEEEecccCCCccCCCCCCeEEEeecccCCccccCCCccccCCCC-CCeEEEEeEEE
Q 023337 140 ADFHTYSVLWNPQRIVFYVDGSPIREFKNLESNGVLFPKNQPMRIYSSLWNADDWATRGGLIKTDWTQ-APFTASYRNFN 218 (283)
Q Consensus 140 ~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~gg~Wat~gG~~~~d~~~-~Pf~~~~~~~~ 218 (283)
..|+.-.|.=....|+|.|||.+|.++..... ...|.- .+|++ -..+ +|..|.|+++.
T Consensus 159 ~~~Yr~~i~K~~~~v~f~In~L~vf~w~Dd~~--~~gPvl-----------------~~G~I--GfRqMapl~A~Yrnl~ 217 (218)
T PF09224_consen 159 RGPYRMEIVKDGRTVRFSINGLPVFSWTDDGS--TYGPVL-----------------RGGRI--GFRQMAPLVARYRNLE 217 (218)
T ss_dssp -S-EEEEEEEETTEEEEEETTEEEEEEE--SS--SSSS--------------------SBEE--EEEEETT-EEEEEEEE
T ss_pred CCCEEEEEEEcCCEEEEEECCEEEEEEEcCCC--ccCCcc-----------------cCcEe--eeeccchhhhhhcccc
Confidence 35666677779999999999999999875431 112320 13443 2222 79999999987
Q ss_pred E
Q 023337 219 A 219 (283)
Q Consensus 219 ~ 219 (283)
|
T Consensus 218 V 218 (218)
T PF09224_consen 218 V 218 (218)
T ss_dssp E
T ss_pred C
Confidence 6
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.94 E-value=9.3 Score=29.54 Aligned_cols=7 Identities=29% Similarity=0.164 Sum_probs=3.7
Q ss_pred CCchhhH
Q 023337 1 MAYSKNF 7 (283)
Q Consensus 1 m~~~~~~ 7 (283)
|++.+++
T Consensus 1 MaSK~~l 7 (95)
T PF07172_consen 1 MASKAFL 7 (95)
T ss_pred CchhHHH
Confidence 7744433
No 33
>PF02973 Sialidase: Sialidase, N-terminal domain; InterPro: IPR004124 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Sialidases (GH33 from CAZY) hydrolyse alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates. Sialidases may act as pathogenic factors in microbial infections []. The 1.8 A structure of trans-sialidase from leech (Macrobdella decora, Q27701 from SWISSPROT) in complex with 2-deoxy-2, 3-didehydro-NeuAc was solved. The refined model comprising residues 81-769 has a catalytic beta-propeller domain, a N-terminal lectin-like domain and an irregular beta-stranded domain inserted into the catalytic domain [].; GO: 0004308 exo-alpha-sialidase activity, 0005975 carbohydrate metabolic process; PDB: 2JKB_A 2VW2_A 2VW0_A 2VW1_A 2V73_B 2V72_A 1SLI_A 1SLL_A 2SLI_A 4SLI_A ....
Probab=51.20 E-value=1.7e+02 Score=25.55 Aligned_cols=132 Identities=14% Similarity=0.229 Sum_probs=66.3
Q ss_pred cceEeEEEEEEEEecCCCCCceEEEEEecCCCC----------CcceEEEEecCCCCCCceEEEeeeecCCCCCceeeEe
Q 023337 64 SEYLFGKIDMQLKLVPGNSAGTVTAYYLKSPGS----------TWDEIDFEFLGNLSGDPYTLHTNVFTNGKGDREQQFH 133 (283)
Q Consensus 64 ~~~~yG~~eariKlp~~~~~G~~~AFwl~~~~~----------~~~EIDiE~lg~~~g~~~~~~tNv~~~g~~~~~~~~~ 133 (283)
....-|.+.+|.|.... . ..-+++-.++.. ..+++=+|+.+......+...+.+...+.
T Consensus 30 k~L~~gTI~i~Fk~~~~--~-~~~sLfsiSn~~~~n~YF~lyv~~~~~G~E~R~~~~~~~y~~~~~~~v~~~-------- 98 (190)
T PF02973_consen 30 KKLEEGTIVIRFKSDSN--S-GIQSLFSISNSTKGNEYFSLYVSNNKLGFELRDTKGNQNYNFSRPAKVRGG-------- 98 (190)
T ss_dssp CT-SSEEEEEEEEESS---S-SEEEEEEEE-TSTTSEEEEEEEETTEEEEEEEETTTTCEEEEEESSE--SE--------
T ss_pred hcccccEEEEEEecCCC--c-ceeEEEEecCCCCccceEEEEEECCEEEEEEecCCCCcccccccccEeccc--------
Confidence 34446677777776433 3 344455554310 11267678877654444444333211110
Q ss_pred ecCCCCCCcEEEEEEEc--cCeEEEEeCCCeEEEEecccCCCccCCCCC--CeEEEeecccCCccccCCCccccCCCCCC
Q 023337 134 LWFDPTADFHTYSVLWN--PQRIVFYVDGSPIREFKNLESNGVLFPKNQ--PMRIYSSLWNADDWATRGGLIKTDWTQAP 209 (283)
Q Consensus 134 l~fd~~~dfHtY~i~Wt--p~~I~fyVDg~~vr~~~~~~~~g~~~P~~~--Pm~l~lnlw~gg~Wat~gG~~~~d~~~~P 209 (283)
.+ ....||+-++.=. ..+.++|+||..+.+..... ..|-.+- +=.+.+ |+- .|+|. ...|
T Consensus 99 ~~--~~~~~~tva~~ad~~~~~ykly~NG~~v~~~~~~~---~~Fis~i~~~n~~~i----G~t--~R~g~-----~~y~ 162 (190)
T PF02973_consen 99 YK--NNVTFNTVAFVADSKNKGYKLYVNGELVSTLSSKS---GNFISDIPGLNSVQI----GGT--NRAGS-----NAYP 162 (190)
T ss_dssp ET--TEES-EEEEEEEETTTTEEEEEETTCEEEEEEECT---SS-GGGSTT--EEEE----SSE--EETTE-----EES-
T ss_pred cc--CCceEEEEEEEEecCCCeEEEEeCCeeEEEecccc---ccHhhcCcCCceEEE----cce--EeCCC-----ceec
Confidence 01 1346788888776 67999999999888775432 1222111 112222 221 22332 2479
Q ss_pred eEEEEeEEEEeEE
Q 023337 210 FTASYRNFNANAC 222 (283)
Q Consensus 210 f~~~~~~~~~~~c 222 (283)
|.-.++++++..+
T Consensus 163 f~G~I~~l~iYn~ 175 (190)
T PF02973_consen 163 FNGTIDNLKIYNR 175 (190)
T ss_dssp -EEEEEEEEEESS
T ss_pred ccceEEEEEEEcC
Confidence 9999999998744
No 34
>smart00282 LamG Laminin G domain.
Probab=47.60 E-value=86 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.4
Q ss_pred CCCcEEEEEEEccCeEEEEeCCCeEEE
Q 023337 139 TADFHTYSVLWNPQRIVFYVDGSPIRE 165 (283)
Q Consensus 139 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~ 165 (283)
...||.-.|.-....++.+|||.....
T Consensus 61 dg~WH~v~i~~~~~~~~l~VD~~~~~~ 87 (135)
T smart00282 61 DGQWHRVAVERNGRRVTLSVDGENPVS 87 (135)
T ss_pred CCCEEEEEEEEeCCEEEEEECCCcccc
Confidence 568999999999999999999976543
No 35
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=40.53 E-value=1.6e+02 Score=22.17 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=27.1
Q ss_pred CCCCcEEEEEEEccCeEEEEeCCCeEEEEec
Q 023337 138 PTADFHTYSVLWNPQRIVFYVDGSPIREFKN 168 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~~ 168 (283)
....||+-.|.-....++..||+........
T Consensus 52 ~dg~wh~v~i~~~~~~~~l~Vd~~~~~~~~~ 82 (128)
T PF02210_consen 52 NDGQWHKVSISRDGNRVTLTVDGQSVSSESL 82 (128)
T ss_dssp TSSSEEEEEEEEETTEEEEEETTSEEEEEES
T ss_pred cccceeEEEEEEeeeeEEEEecCccceEEec
Confidence 3678999999999999999999999877654
No 36
>KOG4352 consensus Fas-mediated apoptosis inhibitor FAIM [Signal transduction mechanisms]
Probab=29.45 E-value=1.1e+02 Score=25.80 Aligned_cols=36 Identities=25% Similarity=0.648 Sum_probs=27.7
Q ss_pred eeeEeecCCCCCCcEEEEEEEccCeEEEEeCCCeEEE
Q 023337 129 EQQFHLWFDPTADFHTYSVLWNPQRIVFYVDGSPIRE 165 (283)
Q Consensus 129 ~~~~~l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~ 165 (283)
..++++|-- +.|=|.|+|.-..+.+..+++|..+++
T Consensus 92 ~k~~~~W~~-t~dg~~~RivL~kdtm~~w~NG~~l~T 127 (187)
T KOG4352|consen 92 TKQYRLWLY-TDDGQEYRIVLKKDTMSLWVNGDELRT 127 (187)
T ss_pred hhheeEEEE-ecCCceEEEEEeccceeeEEcCccccc
Confidence 345566532 334499999999999999999998876
No 37
>PRK01904 hypothetical protein; Provisional
Probab=28.09 E-value=1.3e+02 Score=26.69 Aligned_cols=13 Identities=31% Similarity=0.621 Sum_probs=7.0
Q ss_pred CHH-HHHHHHHHhh
Q 023337 245 DAT-GQERLKWVQK 257 (283)
Q Consensus 245 ~~~-~~~~~~~~~~ 257 (283)
|++ +++-++|+.+
T Consensus 204 d~etrk~F~~w~~~ 217 (219)
T PRK01904 204 DKETQTRFLNWAKK 217 (219)
T ss_pred CHHHHHHHHHHHhh
Confidence 444 4455667654
No 38
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=5.6e+02 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=19.7
Q ss_pred cEEEEEEEccC-eEEEEeCCCeEEE
Q 023337 142 FHTYSVLWNPQ-RIVFYVDGSPIRE 165 (283)
Q Consensus 142 fHtY~i~Wtp~-~I~fyVDg~~vr~ 165 (283)
=|.|++.-.|+ .....|||+.+.+
T Consensus 170 tHlYTlIlRPd~TYeVkIDn~~~es 194 (406)
T KOG0674|consen 170 THLYTLILRPDATYEVKIDNQQVES 194 (406)
T ss_pred ceeEEEEecCCCeeEEEEccccccc
Confidence 59999999987 4568899988754
No 39
>PRK02710 plastocyanin; Provisional
Probab=25.93 E-value=1.8e+02 Score=22.90 Aligned_cols=8 Identities=13% Similarity=0.086 Sum_probs=3.6
Q ss_pred ecCCCeEE
Q 023337 34 WGDGRGKI 41 (283)
Q Consensus 34 w~~~nv~~ 41 (283)
+.++.+.+
T Consensus 44 F~P~~i~v 51 (119)
T PRK02710 44 FEPSTLTI 51 (119)
T ss_pred EeCCEEEE
Confidence 34444444
No 40
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=23.13 E-value=1.5e+02 Score=24.80 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHhhhhcc-------------------ccccccCCeeeecCCCeEEecC
Q 023337 4 SKNFTLLISIAISSLMVAS-------------------ASNFYQDFDITWGDGRGKILNN 44 (283)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-------------------~~~f~~~f~~~w~~~nv~~~~~ 44 (283)
+.|+++++.+|++++++.. +....++|.+.-.|.++....+
T Consensus 7 SeLV~FIaalLiaasvag~Lt~~t~~l~~sm~d~~~~~a~~i~~dFaIIndPg~i~~~~~ 66 (154)
T COG3354 7 SELVMFIAALLIAASVAGALTDSTTHLSDSMNDRSDMLADMIQTDFAIINDPGQIPYVGT 66 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHhhhhhhhchhhHHHHHHhhccEEEecCCCCCccccC
Confidence 3477777777766543321 2356788888888888777655
No 41
>PF12248 Methyltransf_FA: Farnesoic acid 0-methyl transferase; InterPro: IPR022041 This domain, found in farnesoic acid O-methyl transferase, is approximately 110 amino acids in length. Farnesoic acid O-methyl transferase (FAMeT) is the enzyme that catalyses the formation of methyl farnesoate (MF) from farnesoic acid (FA) in the biosynthetic pathway of juvenile hormone (JH) [].
Probab=22.55 E-value=3.5e+02 Score=20.56 Aligned_cols=46 Identities=20% Similarity=0.395 Sum_probs=33.4
Q ss_pred CCCCcEEEEEEEccCeEEEEeCCC--eEEEEecccCCCccCCCCCCeEEEeeccc
Q 023337 138 PTADFHTYSVLWNPQRIVFYVDGS--PIREFKNLESNGVLFPKNQPMRIYSSLWN 190 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp~~I~fyVDg~--~vr~~~~~~~~g~~~P~~~Pm~l~lnlw~ 190 (283)
...+|..|.|.|....|.+..||. |+-++...+ |. ...++-++-|.
T Consensus 50 s~~e~~~fwI~~~~G~I~vg~~g~~~pfl~~~Dp~------~~-~v~yvGft~w~ 97 (102)
T PF12248_consen 50 SPSEFRMFWISWRDGTIRVGRGGEDEPFLEWTDPE------PI-PVNYVGFTGWG 97 (102)
T ss_pred CCCccEEEEEEECCCEEEEEECCCccEEEEEECCC------CC-cccEEEEecCC
Confidence 467899999999999999999987 666665321 22 34456556654
No 42
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=22.38 E-value=2e+02 Score=20.86 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=31.7
Q ss_pred ecCCCeEEecCCcEEEEEEecCCCCeEEEccceEeEEEEEEEEecCCCCCceEEEE
Q 023337 34 WGDGRGKILNNGQLLSLSLDKASGSGFQSKSEYLFGKIDMQLKLVPGNSAGTVTAY 89 (283)
Q Consensus 34 w~~~nv~~~~~G~~l~l~~d~~sG~~i~Sk~~~~yG~~eariKlp~~~~~G~~~AF 89 (283)
+.++++.+.-+++.|.++..+..... ...+.+|.|+=+++||..-...-+.|-
T Consensus 18 ~~~edI~v~v~~~~L~I~g~~~~~~~---~~~~~~~~f~r~~~LP~~vd~~~i~A~ 70 (83)
T cd06526 18 FKPEELKVKVSDNKLVVEGKHEERED---EHGYVSREFTRRYQLPEGVDPDSVTSS 70 (83)
T ss_pred CCHHHcEEEEECCEEEEEEEEeeecc---CCCEEEEEEEEEEECCCCCChHHeEEE
Confidence 34556665555666777764322111 345678999999999976334444443
No 43
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=20.41 E-value=1.2e+02 Score=23.85 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=23.6
Q ss_pred CCCCcEEEEEEEccCeEEEEeCCCeEEEEe
Q 023337 138 PTADFHTYSVLWNPQRIVFYVDGSPIREFK 167 (283)
Q Consensus 138 ~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 167 (283)
+.++-|++.+. ..+.++++|||+++-...
T Consensus 57 ~~~G~y~f~~~-~~d~~~l~idg~~vid~~ 85 (145)
T PF07691_consen 57 PETGTYTFSLT-SDDGARLWIDGKLVIDNW 85 (145)
T ss_dssp SSSEEEEEEEE-ESSEEEEEETTEEEEECS
T ss_pred ccCceEEEEEE-ecccEEEEECCEEEEcCC
Confidence 46778888888 888999999999986543
No 44
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.20 E-value=3.6e+02 Score=21.14 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.1
Q ss_pred CCCcEEEEEEEccCeEEEEeCCCeEEEEe
Q 023337 139 TADFHTYSVLWNPQRIVFYVDGSPIREFK 167 (283)
Q Consensus 139 ~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 167 (283)
...||+-.+.-+...+...||+....+..
T Consensus 52 dg~wh~v~~~r~~~~~~L~Vd~~~~~~~~ 80 (131)
T PF00054_consen 52 DGKWHTVSVSRNGRNGSLSVDGEEVVTGE 80 (131)
T ss_dssp SSSEEEEEEEEETTEEEEEETTSEEEEEE
T ss_pred CCcceEEEEEEcCcEEEEEECCccceeee
Confidence 56899999999999999999999884433
No 45
>cd00070 GLECT Galectin/galactose-binding lectin. This domain exclusively binds beta-galactosides, such as lactose, and does not require metal ions for activity. GLECT domains occur as homodimers or tandemly repeated domains. They are developmentally regulated and may be involved in differentiation, cell-cell interaction and cellular regulation.
Probab=20.15 E-value=1.8e+02 Score=22.99 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=31.7
Q ss_pred ecCCCCCceeeEe-ecCCCCCCcEEEEEEEccCeEEEEeCCCeEEEEe
Q 023337 121 FTNGKGDREQQFH-LWFDPTADFHTYSVLWNPQRIVFYVDGSPIREFK 167 (283)
Q Consensus 121 ~~~g~~~~~~~~~-l~fd~~~dfHtY~i~Wtp~~I~fyVDg~~vr~~~ 167 (283)
+.+|.-++|++.. .+|.+ .+..+-.|.=+++....+|||+++.++.
T Consensus 58 ~~~g~Wg~Eer~~~~pf~~-g~~F~l~i~~~~~~f~i~vng~~~~~F~ 104 (127)
T cd00070 58 FLNGNWGPEERSGGFPFQP-GQPFELTILVEEDKFQIFVNGQHFFSFP 104 (127)
T ss_pred CCCCEecHhhccCCCCCCC-CCeEEEEEEEcCCEEEEEECCEeEEEec
Confidence 3344444555543 45544 3444888888999999999999987765
Done!