Query 023338
Match_columns 283
No_of_seqs 255 out of 1840
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:15:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0037 Ca2+-binding protein, 100.0 7.2E-34 1.6E-38 218.9 24.6 166 113-280 55-221 (221)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 1.3E-24 2.8E-29 163.2 14.5 139 106-247 11-156 (160)
3 KOG0027 Calmodulin and related 99.9 1.8E-23 3.9E-28 160.3 15.3 132 113-246 6-148 (151)
4 KOG0028 Ca2+-binding protein ( 99.9 8.9E-22 1.9E-26 144.3 14.5 136 110-247 28-170 (172)
5 PTZ00183 centrin; Provisional 99.8 8.1E-20 1.8E-24 141.4 15.8 138 108-247 10-154 (158)
6 KOG0030 Myosin essential light 99.8 1.1E-19 2.3E-24 130.2 12.6 135 109-246 5-150 (152)
7 PTZ00184 calmodulin; Provision 99.8 2.1E-19 4.6E-24 137.5 15.1 133 112-246 8-147 (149)
8 KOG0031 Myosin regulatory ligh 99.8 3.6E-19 7.8E-24 129.7 13.4 134 107-246 24-164 (171)
9 KOG0037 Ca2+-binding protein, 99.7 2.1E-17 4.6E-22 128.1 10.9 86 115-200 124-209 (221)
10 KOG0036 Predicted mitochondria 99.7 4.7E-16 1E-20 130.7 15.2 134 112-247 11-146 (463)
11 KOG0034 Ca2+/calmodulin-depend 99.7 1.1E-15 2.3E-20 119.2 13.0 140 109-254 27-182 (187)
12 KOG0044 Ca2+ sensor (EF-Hand s 99.7 2.3E-15 5E-20 117.3 14.2 142 114-257 25-185 (193)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2.6E-12 5.6E-17 100.3 15.3 141 132-278 9-174 (193)
14 KOG0027 Calmodulin and related 99.5 3.3E-12 7E-17 97.9 14.7 125 150-278 7-148 (151)
15 PTZ00183 centrin; Provisional 99.5 4.9E-12 1.1E-16 97.6 15.2 125 151-279 17-154 (158)
16 COG5126 FRQ1 Ca2+-binding prot 99.4 7.7E-12 1.7E-16 94.4 15.0 129 147-280 13-157 (160)
17 PTZ00184 calmodulin; Provision 99.4 8.3E-12 1.8E-16 95.3 15.2 124 152-279 12-148 (149)
18 PLN02964 phosphatidylserine de 99.4 3.8E-12 8.3E-17 116.3 12.3 114 107-224 135-272 (644)
19 KOG4223 Reticulocalbin, calume 99.4 5.3E-12 1.1E-16 103.8 10.9 153 113-267 75-259 (325)
20 cd05022 S-100A13 S-100A13: S-1 99.4 5.1E-12 1.1E-16 86.8 9.1 68 179-248 6-76 (89)
21 KOG0028 Ca2+-binding protein ( 99.3 4.7E-11 1E-15 88.2 12.9 125 150-278 32-169 (172)
22 KOG2643 Ca2+ binding protein, 99.3 2.7E-11 5.8E-16 103.1 13.1 159 115-278 233-452 (489)
23 KOG4223 Reticulocalbin, calume 99.3 1.1E-11 2.4E-16 102.0 8.9 128 115-244 163-302 (325)
24 cd05027 S-100B S-100B: S-100B 99.3 5.9E-11 1.3E-15 81.7 9.3 68 179-248 6-80 (88)
25 cd05022 S-100A13 S-100A13: S-1 99.2 4.5E-11 9.7E-16 82.1 7.5 66 115-180 8-76 (89)
26 PF13499 EF-hand_7: EF-hand do 99.2 6.8E-11 1.5E-15 77.2 7.1 62 182-245 1-66 (66)
27 KOG0031 Myosin regulatory ligh 99.2 3E-10 6.4E-15 83.4 11.1 86 179-270 30-122 (171)
28 PF13499 EF-hand_7: EF-hand do 99.2 8.2E-11 1.8E-15 76.8 7.3 62 116-177 1-66 (66)
29 KOG1924 RhoA GTPase effector D 99.2 3.6E-10 7.8E-15 102.3 12.7 15 235-249 761-775 (1102)
30 cd05027 S-100B S-100B: S-100B 99.2 3.5E-10 7.6E-15 77.8 9.1 66 115-180 8-80 (88)
31 cd05031 S-100A10_like S-100A10 99.1 6.9E-10 1.5E-14 77.8 10.6 74 180-255 7-87 (94)
32 KOG0751 Mitochondrial aspartat 99.1 2.2E-09 4.8E-14 92.8 15.4 161 110-275 28-206 (694)
33 KOG0377 Protein serine/threoni 99.1 9.6E-10 2.1E-14 93.8 12.9 132 115-250 464-618 (631)
34 cd05029 S-100A6 S-100A6: S-100 99.1 5.6E-10 1.2E-14 76.8 9.3 68 179-248 8-80 (88)
35 KOG0030 Myosin essential light 99.1 5.2E-10 1.1E-14 80.7 9.0 89 180-268 10-107 (152)
36 cd05026 S-100Z S-100Z: S-100Z 99.1 6.8E-10 1.5E-14 77.4 8.6 69 179-249 8-83 (93)
37 cd05025 S-100A1 S-100A1: S-100 99.1 9.1E-10 2E-14 76.8 8.7 68 180-249 8-82 (92)
38 cd05025 S-100A1 S-100A1: S-100 99.1 1.6E-09 3.4E-14 75.6 9.4 67 115-181 9-82 (92)
39 smart00027 EH Eps15 homology d 99.1 1.5E-09 3.2E-14 76.4 9.2 70 180-253 9-78 (96)
40 smart00027 EH Eps15 homology d 99.0 1E-09 2.2E-14 77.2 7.6 71 112-184 7-77 (96)
41 cd05026 S-100Z S-100Z: S-100Z 99.0 2.6E-09 5.6E-14 74.5 9.5 67 115-181 10-83 (93)
42 KOG0034 Ca2+/calmodulin-depend 99.0 1.4E-08 3E-13 79.5 14.4 129 148-280 27-176 (187)
43 cd05031 S-100A10_like S-100A10 99.0 2.5E-09 5.4E-14 74.9 8.8 66 115-180 8-80 (94)
44 KOG0038 Ca2+-binding kinase in 99.0 3.3E-09 7.1E-14 77.2 9.1 100 154-255 74-185 (189)
45 cd00052 EH Eps15 homology doma 99.0 4E-09 8.7E-14 68.9 8.4 62 184-249 2-63 (67)
46 cd00052 EH Eps15 homology doma 99.0 3.5E-09 7.6E-14 69.2 7.8 61 118-180 2-62 (67)
47 cd05023 S-100A11 S-100A11: S-1 99.0 5E-09 1.1E-13 72.2 8.6 68 179-248 7-81 (89)
48 KOG0036 Predicted mitochondria 99.0 1.7E-08 3.7E-13 85.8 13.4 120 150-278 13-145 (463)
49 cd00213 S-100 S-100: S-100 dom 99.0 6.1E-09 1.3E-13 72.0 8.9 68 179-248 6-80 (88)
50 cd05029 S-100A6 S-100A6: S-100 98.9 8.1E-09 1.8E-13 71.0 8.9 67 115-181 10-81 (88)
51 PLN02964 phosphatidylserine de 98.9 4E-09 8.7E-14 96.8 9.4 94 151-247 143-243 (644)
52 cd00213 S-100 S-100: S-100 dom 98.9 4E-09 8.7E-14 73.0 7.3 68 113-180 6-80 (88)
53 KOG1924 RhoA GTPase effector D 98.9 1.1E-07 2.3E-12 86.7 16.9 8 201-208 765-772 (1102)
54 PF13833 EF-hand_8: EF-hand do 98.9 6.6E-09 1.4E-13 64.8 6.6 52 194-247 1-53 (54)
55 cd00252 SPARC_EC SPARC_EC; ext 98.9 4.1E-08 9E-13 70.9 11.5 61 180-246 47-107 (116)
56 cd05023 S-100A11 S-100A11: S-1 98.9 2.3E-08 5E-13 68.9 9.1 66 115-180 9-81 (89)
57 KOG4251 Calcium binding protei 98.9 4.7E-09 1E-13 83.1 6.2 66 113-178 99-167 (362)
58 KOG0751 Mitochondrial aspartat 98.8 5.4E-08 1.2E-12 84.4 12.1 160 114-278 107-277 (694)
59 PF13833 EF-hand_8: EF-hand do 98.8 1.7E-08 3.6E-13 62.9 6.3 52 128-179 1-53 (54)
60 cd00051 EFh EF-hand, calcium b 98.8 2.6E-08 5.6E-13 63.5 7.3 61 117-177 2-62 (63)
61 cd00051 EFh EF-hand, calcium b 98.8 3.3E-08 7.2E-13 63.0 7.7 61 183-245 2-62 (63)
62 PF14658 EF-hand_9: EF-hand do 98.8 3.9E-08 8.5E-13 62.4 6.6 63 185-248 2-65 (66)
63 KOG2643 Ca2+ binding protein, 98.7 4.6E-08 1E-12 83.7 8.5 124 120-247 323-453 (489)
64 PF14658 EF-hand_9: EF-hand do 98.7 4.3E-08 9.2E-13 62.3 6.0 60 119-178 2-63 (66)
65 cd05030 calgranulins Calgranul 98.7 6.2E-08 1.3E-12 66.8 7.4 67 180-248 7-80 (88)
66 KOG2562 Protein phosphatase 2 98.7 1.1E-07 2.5E-12 82.0 10.4 122 152-276 226-378 (493)
67 KOG0041 Predicted Ca2+-binding 98.7 1.2E-07 2.6E-12 72.9 8.6 77 170-248 87-164 (244)
68 cd00252 SPARC_EC SPARC_EC; ext 98.7 9.7E-08 2.1E-12 69.0 7.6 56 152-207 49-106 (116)
69 KOG0041 Predicted Ca2+-binding 98.6 6.4E-07 1.4E-11 69.0 11.4 70 110-179 94-163 (244)
70 KOG0040 Ca2+-binding actin-bun 98.6 5.3E-07 1.2E-11 87.2 11.8 130 108-245 2246-2396(2399)
71 cd05030 calgranulins Calgranul 98.6 2.9E-07 6.3E-12 63.5 7.4 66 115-180 8-80 (88)
72 KOG2562 Protein phosphatase 2 98.5 9E-07 1.9E-11 76.6 10.1 119 121-244 284-421 (493)
73 cd05024 S-100A10 S-100A10: A s 98.5 3.1E-06 6.7E-11 57.8 9.8 67 180-249 7-78 (91)
74 PF00036 EF-hand_1: EF hand; 98.5 2.4E-07 5.1E-12 49.3 3.4 29 182-210 1-29 (29)
75 KOG0169 Phosphoinositide-speci 98.4 3.4E-06 7.3E-11 77.4 12.4 132 115-247 136-274 (746)
76 cd05024 S-100A10 S-100A10: A s 98.4 3.8E-06 8.2E-11 57.4 9.4 66 115-181 8-78 (91)
77 PF00036 EF-hand_1: EF hand; 98.4 6.2E-07 1.3E-11 47.7 3.5 29 116-144 1-29 (29)
78 KOG0377 Protein serine/threoni 98.3 8E-06 1.7E-10 70.4 11.0 123 150-276 463-612 (631)
79 PF13405 EF-hand_6: EF-hand do 98.3 1E-06 2.2E-11 47.9 3.5 30 182-211 1-31 (31)
80 KOG4251 Calcium binding protei 98.3 3.3E-06 7.1E-11 67.2 7.1 126 119-246 194-344 (362)
81 PF12763 EF-hand_4: Cytoskelet 98.3 4.8E-06 1E-10 58.9 7.2 67 111-180 6-72 (104)
82 PF13405 EF-hand_6: EF-hand do 98.2 1.6E-06 3.5E-11 47.1 3.6 30 116-145 1-31 (31)
83 KOG1029 Endocytic adaptor prot 98.1 5.8E-05 1.3E-09 69.3 13.3 64 182-249 196-259 (1118)
84 PF12763 EF-hand_4: Cytoskelet 98.1 2.2E-05 4.8E-10 55.5 8.4 67 181-252 10-76 (104)
85 PF14788 EF-hand_10: EF hand; 98.1 1E-05 2.2E-10 48.5 5.5 50 131-180 1-50 (51)
86 PRK12309 transaldolase/EF-hand 98.1 2.1E-05 4.5E-10 69.0 9.9 54 181-249 334-387 (391)
87 PF14788 EF-hand_10: EF hand; 98.1 1.3E-05 2.8E-10 48.0 5.8 49 198-248 2-50 (51)
88 KOG4666 Predicted phosphate ac 98.1 5.5E-06 1.2E-10 68.6 5.2 103 151-256 259-368 (412)
89 PF13202 EF-hand_5: EF hand; P 98.0 7.5E-06 1.6E-10 41.9 2.9 25 183-207 1-25 (25)
90 KOG1707 Predicted Ras related/ 97.9 9.7E-05 2.1E-09 66.4 10.6 159 111-275 191-415 (625)
91 PRK12309 transaldolase/EF-hand 97.9 3.4E-05 7.4E-10 67.6 7.4 59 145-210 328-386 (391)
92 PF13202 EF-hand_5: EF hand; P 97.9 1.5E-05 3.3E-10 40.7 3.1 25 117-141 1-25 (25)
93 KOG0040 Ca2+-binding actin-bun 97.9 8.8E-05 1.9E-09 72.6 10.1 79 180-260 2252-2345(2399)
94 PF10591 SPARC_Ca_bdg: Secrete 97.9 1.6E-05 3.5E-10 57.3 3.6 61 180-244 53-113 (113)
95 KOG0038 Ca2+-binding kinase in 97.7 0.00023 5E-09 52.3 7.6 92 118-209 74-177 (189)
96 KOG4666 Predicted phosphate ac 97.6 0.00027 5.8E-09 58.9 6.9 110 165-278 241-358 (412)
97 KOG0046 Ca2+-binding actin-bun 97.5 0.00038 8.3E-09 61.5 7.1 67 180-249 18-87 (627)
98 KOG0169 Phosphoinositide-speci 97.5 0.0037 8.1E-08 58.1 13.7 125 149-279 134-274 (746)
99 PF10591 SPARC_Ca_bdg: Secrete 97.4 6.8E-05 1.5E-09 54.1 1.7 58 147-204 50-111 (113)
100 KOG0046 Ca2+-binding actin-bun 97.3 0.00057 1.2E-08 60.5 5.7 67 113-180 17-86 (627)
101 KOG4849 mRNA cleavage factor I 97.1 0.16 3.4E-06 43.1 19.6 27 112-143 357-383 (498)
102 PF09279 EF-hand_like: Phospho 96.9 0.0049 1.1E-07 41.8 6.5 65 182-247 1-69 (83)
103 smart00054 EFh EF-hand, calciu 96.9 0.0017 3.7E-08 33.4 3.4 28 116-143 1-28 (29)
104 smart00054 EFh EF-hand, calciu 96.8 0.0016 3.5E-08 33.6 3.1 27 183-209 2-28 (29)
105 KOG1923 Rac1 GTPase effector F 96.8 0.086 1.9E-06 49.3 15.5 18 237-254 509-526 (830)
106 KOG0035 Ca2+-binding actin-bun 96.8 0.0088 1.9E-07 57.0 9.4 91 114-205 746-848 (890)
107 PF05042 Caleosin: Caleosin re 96.7 0.01 2.2E-07 45.4 7.6 127 116-244 8-163 (174)
108 KOG4065 Uncharacterized conser 96.6 0.0066 1.4E-07 42.8 5.6 57 186-244 72-142 (144)
109 KOG3555 Ca2+-binding proteogly 96.6 0.0065 1.4E-07 51.2 6.2 58 183-246 252-309 (434)
110 PF09279 EF-hand_like: Phospho 96.4 0.011 2.4E-07 40.0 5.5 62 116-178 1-68 (83)
111 KOG1029 Endocytic adaptor prot 96.3 0.0075 1.6E-07 56.0 5.7 68 110-179 190-257 (1118)
112 KOG4065 Uncharacterized conser 96.2 0.018 3.8E-07 40.7 5.7 57 119-175 71-141 (144)
113 KOG2243 Ca2+ release channel ( 96.2 0.025 5.3E-07 55.9 8.2 59 185-246 4061-4119(5019)
114 KOG3555 Ca2+-binding proteogly 96.1 0.02 4.3E-07 48.4 6.4 97 115-211 211-312 (434)
115 PF05517 p25-alpha: p25-alpha 95.8 0.067 1.4E-06 40.9 7.9 84 117-209 1-90 (154)
116 KOG0998 Synaptic vesicle prote 95.7 0.01 2.2E-07 57.6 3.6 128 114-248 128-346 (847)
117 PLN02952 phosphoinositide phos 95.6 0.1 2.2E-06 48.4 9.8 81 165-246 14-109 (599)
118 KOG1265 Phospholipase C [Lipid 95.6 0.23 5E-06 47.4 11.8 120 125-247 158-299 (1189)
119 KOG2391 Vacuolar sorting prote 95.5 1.3 2.9E-05 37.7 15.3 44 202-249 301-344 (365)
120 KOG1955 Ral-GTPase effector RA 95.4 0.023 4.9E-07 50.4 4.5 65 112-178 228-292 (737)
121 PF05517 p25-alpha: p25-alpha 95.4 0.1 2.2E-06 39.9 7.5 60 187-248 8-70 (154)
122 KOG3866 DNA-binding protein of 95.2 0.084 1.8E-06 44.1 6.8 60 184-245 247-322 (442)
123 KOG4347 GTPase-activating prot 94.8 0.19 4E-06 46.4 8.6 69 134-203 537-612 (671)
124 KOG0819 Annexin [Intracellular 94.8 0.21 4.5E-06 42.3 8.3 104 108-227 15-131 (321)
125 KOG1955 Ral-GTPase effector RA 94.6 0.071 1.5E-06 47.4 5.2 64 181-248 231-294 (737)
126 KOG0998 Synaptic vesicle prote 94.1 0.11 2.4E-06 50.6 6.0 132 115-253 11-196 (847)
127 PF05042 Caleosin: Caleosin re 94.0 0.21 4.6E-06 38.3 6.2 69 115-207 96-164 (174)
128 KOG4578 Uncharacterized conser 94.0 0.034 7.4E-07 46.7 2.0 59 152-210 334-399 (421)
129 KOG4403 Cell surface glycoprot 93.9 0.24 5.2E-06 43.3 7.0 31 147-177 64-94 (575)
130 KOG0042 Glycerol-3-phosphate d 93.6 0.097 2.1E-06 47.5 4.2 70 110-179 588-657 (680)
131 KOG1707 Predicted Ras related/ 93.6 0.59 1.3E-05 42.9 9.1 67 180-246 194-264 (625)
132 PF09069 EF-hand_3: EF-hand; 93.0 0.92 2E-05 31.1 7.4 61 115-178 3-74 (90)
133 PF09069 EF-hand_3: EF-hand; 93.0 0.83 1.8E-05 31.3 7.2 63 181-248 3-76 (90)
134 KOG4849 mRNA cleavage factor I 93.0 3 6.4E-05 35.7 11.7 24 131-155 356-379 (498)
135 KOG0819 Annexin [Intracellular 92.7 0.25 5.3E-06 41.9 5.1 147 108-258 45-214 (321)
136 PF08726 EFhand_Ca_insen: Ca2+ 92.6 0.053 1.1E-06 35.1 0.8 56 181-244 6-66 (69)
137 KOG3866 DNA-binding protein of 92.3 0.24 5.2E-06 41.5 4.4 78 118-209 247-324 (442)
138 PF11116 DUF2624: Protein of u 92.1 1.6 3.5E-05 29.4 7.5 51 129-179 12-62 (85)
139 KOG0035 Ca2+-binding actin-bun 92.1 0.67 1.5E-05 44.8 7.8 82 180-263 746-839 (890)
140 KOG0042 Glycerol-3-phosphate d 92.1 0.42 9.1E-06 43.6 6.1 66 182-249 594-659 (680)
141 PLN02952 phosphoinositide phos 91.9 0.85 1.8E-05 42.6 8.1 83 194-279 13-110 (599)
142 KOG3449 60S acidic ribosomal p 91.9 1.2 2.5E-05 31.4 6.8 54 184-244 4-57 (112)
143 KOG4578 Uncharacterized conser 91.8 0.12 2.5E-06 43.6 2.1 62 182-247 334-398 (421)
144 KOG4347 GTPase-activating prot 91.3 0.54 1.2E-05 43.4 6.1 58 115-173 555-612 (671)
145 KOG4286 Dystrophin-like protei 91.2 3.8 8.3E-05 38.8 11.2 133 112-247 376-533 (966)
146 KOG1785 Tyrosine kinase negati 91.0 1.8 3.9E-05 37.7 8.4 33 213-248 171-203 (563)
147 PRK09430 djlA Dna-J like membr 90.3 7.7 0.00017 32.6 11.7 98 127-227 67-176 (267)
148 TIGR01639 P_fal_TIGR01639 Plas 89.8 2 4.4E-05 27.0 6.1 50 196-252 8-57 (61)
149 PF12486 DUF3702: ImpA domain 89.5 3.1 6.7E-05 31.4 7.8 85 167-255 55-143 (148)
150 KOG1923 Rac1 GTPase effector F 89.3 14 0.0003 35.4 13.2 12 132-143 401-412 (830)
151 cd07313 terB_like_2 tellurium 89.3 2.9 6.4E-05 29.2 7.4 50 129-178 13-64 (104)
152 PF09068 EF-hand_2: EF hand; 88.0 3.2 7E-05 30.5 7.0 27 183-209 99-125 (127)
153 PF13929 mRNA_stabil: mRNA sta 87.7 16 0.00035 30.9 14.5 94 186-282 78-175 (292)
154 PF14513 DAG_kinase_N: Diacylg 87.6 3.8 8.3E-05 30.5 7.2 63 129-193 5-81 (138)
155 KOG1264 Phospholipase C [Lipid 86.8 2.2 4.7E-05 40.9 6.6 127 117-244 146-290 (1267)
156 KOG4301 Beta-dystrobrevin [Cyt 86.5 5.6 0.00012 34.1 8.2 58 187-247 116-173 (434)
157 COG2818 Tag 3-methyladenine DN 86.4 1.8 4E-05 33.7 5.1 43 115-157 55-97 (188)
158 PF06511 IpaD: Invasion plasmi 86.2 1.7 3.7E-05 37.3 5.3 64 197-260 224-313 (337)
159 PRK15330 cell invasion protein 85.9 15 0.00032 31.5 10.4 64 197-260 225-317 (343)
160 KOG3077 Uncharacterized conser 85.8 19 0.00041 29.9 11.5 63 114-178 63-128 (260)
161 TIGR02553 SipD_IpaD_SspD type 85.8 21 0.00045 30.3 12.1 62 199-260 196-282 (308)
162 KOG2243 Ca2+ release channel ( 85.7 1.3 2.8E-05 44.7 4.7 58 120-178 4062-4119(5019)
163 PF12995 DUF3879: Domain of un 85.4 6.1 0.00013 30.1 7.2 56 132-195 2-57 (186)
164 cd08315 Death_TRAILR_DR4_DR5 D 85.3 10 0.00022 26.3 9.5 87 115-223 4-90 (96)
165 COG2818 Tag 3-methyladenine DN 84.8 2.5 5.4E-05 33.0 5.1 51 176-226 50-100 (188)
166 KOG4403 Cell surface glycoprot 84.7 3 6.5E-05 36.8 6.0 29 115-143 68-96 (575)
167 PF08414 NADPH_Ox: Respiratory 84.7 4.6 0.0001 28.0 5.8 46 165-210 42-93 (100)
168 PTZ00373 60S Acidic ribosomal 84.5 6.9 0.00015 28.0 6.9 55 117-176 5-59 (112)
169 KOG2391 Vacuolar sorting prote 84.4 26 0.00056 30.2 12.0 11 269-279 344-354 (365)
170 PTZ00373 60S Acidic ribosomal 84.0 7.8 0.00017 27.7 7.0 53 185-244 7-59 (112)
171 PF12174 RST: RCD1-SRO-TAF4 (R 83.8 1.9 4.2E-05 28.0 3.5 49 195-248 6-54 (70)
172 PF12207 DUF3600: Domain of un 83.6 9 0.00019 28.6 7.2 81 166-248 38-118 (162)
173 PLN02222 phosphoinositide phos 83.6 5 0.00011 37.5 7.4 62 182-246 26-89 (581)
174 COG4807 Uncharacterized protei 83.5 12 0.00026 27.3 7.7 40 180-228 90-129 (155)
175 KOG3449 60S acidic ribosomal p 83.0 9.1 0.0002 27.0 6.7 55 117-176 3-57 (112)
176 PF14513 DAG_kinase_N: Diacylg 82.9 7 0.00015 29.2 6.6 65 166-230 6-82 (138)
177 KOG0869 CCAAT-binding factor, 82.6 16 0.00036 27.5 8.3 83 129-226 30-115 (168)
178 cd07313 terB_like_2 tellurium 82.1 5.5 0.00012 27.8 5.8 50 195-246 13-64 (104)
179 KOG0871 Class 2 transcription 81.7 20 0.00042 26.9 8.5 52 170-226 44-95 (156)
180 KOG1925 Rac1 GTPase effector F 81.5 19 0.00041 32.8 9.7 65 182-253 371-435 (817)
181 PF05099 TerB: Tellurite resis 81.5 2.5 5.4E-05 31.4 4.0 51 128-178 36-88 (140)
182 COG4359 Uncharacterized conser 81.4 2.8 6.1E-05 32.7 4.2 46 194-246 40-86 (220)
183 PRK03968 DNA primase large sub 81.1 17 0.00038 31.6 9.1 32 194-225 118-149 (399)
184 cd04411 Ribosomal_P1_P2_L12p R 80.9 16 0.00034 25.9 7.5 41 198-245 17-57 (105)
185 cd05833 Ribosomal_P2 Ribosomal 80.5 12 0.00026 26.7 6.9 53 120-177 6-58 (109)
186 TIGR01848 PHA_reg_PhaR polyhyd 80.4 11 0.00023 26.6 6.4 20 189-208 11-30 (107)
187 COG2058 RPP1A Ribosomal protei 80.1 8.4 0.00018 27.1 5.8 42 131-177 16-57 (109)
188 cd05833 Ribosomal_P2 Ribosomal 79.1 15 0.00032 26.3 6.9 54 185-245 5-58 (109)
189 TIGR00624 tag DNA-3-methyladen 78.8 2.8 6E-05 32.8 3.5 53 174-226 46-98 (179)
190 PF05872 DUF853: Bacterial pro 78.8 27 0.00059 31.7 9.9 75 182-268 129-218 (502)
191 KOG2871 Uncharacterized conser 78.7 1.7 3.6E-05 37.6 2.4 65 112-176 306-371 (449)
192 PF05099 TerB: Tellurite resis 78.7 2.9 6.2E-05 31.1 3.6 81 195-279 37-126 (140)
193 PRK10353 3-methyl-adenine DNA 78.6 2.2 4.7E-05 33.6 2.9 52 175-226 48-99 (187)
194 PF08726 EFhand_Ca_insen: Ca2+ 78.3 3.4 7.3E-05 26.8 3.2 28 114-142 5-32 (69)
195 KOG1142 Transcription initiati 78.1 5.8 0.00013 32.6 5.2 43 183-228 160-202 (258)
196 CHL00185 ycf59 magnesium-proto 78.1 5.6 0.00012 33.9 5.2 128 113-249 39-183 (351)
197 PLN02508 magnesium-protoporphy 78.1 6.2 0.00014 33.7 5.5 97 114-215 40-142 (357)
198 PRK13654 magnesium-protoporphy 77.9 3.6 7.8E-05 35.2 4.1 98 113-215 43-146 (355)
199 KOG0719 Molecular chaperone (D 77.8 36 0.00079 27.8 9.4 11 113-123 27-37 (264)
200 PLN02228 Phosphoinositide phos 77.8 11 0.00024 35.2 7.6 50 197-246 38-91 (567)
201 PF09068 EF-hand_2: EF hand; 77.5 26 0.00055 25.8 9.6 29 181-209 41-71 (127)
202 TIGR03798 ocin_TIGR03798 bacte 77.1 13 0.00029 23.5 5.8 46 170-222 4-49 (64)
203 PF07879 PHB_acc_N: PHB/PHA ac 76.9 4.7 0.0001 25.4 3.4 22 188-209 10-31 (64)
204 COG5502 Uncharacterized conser 76.9 27 0.00059 25.7 8.1 13 166-178 74-86 (135)
205 PF12174 RST: RCD1-SRO-TAF4 (R 76.7 6.8 0.00015 25.4 4.3 31 149-179 23-53 (70)
206 PF11593 Med3: Mediator comple 76.2 5.4 0.00012 34.5 4.8 12 167-178 7-18 (379)
207 PF11116 DUF2624: Protein of u 76.2 21 0.00046 24.1 7.8 50 197-248 14-63 (85)
208 KOG0144 RNA-binding protein CU 76.0 12 0.00027 33.2 6.9 30 201-230 123-152 (510)
209 PF05872 DUF853: Bacterial pro 75.9 6.2 0.00013 35.6 5.2 103 113-226 126-246 (502)
210 cd04411 Ribosomal_P1_P2_L12p R 75.7 25 0.00054 24.9 7.3 41 132-177 17-57 (105)
211 KOG4422 Uncharacterized conser 75.6 49 0.0011 29.9 10.4 51 192-246 234-284 (625)
212 PLN02230 phosphoinositide phos 75.1 15 0.00033 34.5 7.7 66 181-247 29-102 (598)
213 PF04876 Tenui_NCP: Tenuivirus 75.0 33 0.00071 25.8 9.2 15 236-250 149-163 (175)
214 PRK07003 DNA polymerase III su 74.9 26 0.00056 34.2 9.3 11 197-207 231-241 (830)
215 TIGR02029 AcsF magnesium-proto 74.8 7.5 0.00016 33.0 5.1 128 113-249 33-177 (337)
216 PLN00138 large subunit ribosom 74.7 21 0.00046 25.6 6.8 49 122-175 8-56 (113)
217 PRK06402 rpl12p 50S ribosomal 74.6 25 0.00054 24.9 7.0 40 197-243 16-55 (106)
218 KOG0506 Glutaminase (contains 74.1 9 0.0002 34.5 5.7 59 120-178 91-157 (622)
219 PF14223 UBN2: gag-polypeptide 74.0 29 0.00064 24.7 9.4 69 168-249 41-110 (119)
220 cd07894 Adenylation_RNA_ligase 73.8 6.8 0.00015 34.2 4.9 37 125-161 135-181 (342)
221 PF14771 DUF4476: Domain of un 73.8 24 0.00053 24.2 6.9 12 198-209 40-51 (95)
222 PF13608 Potyvirid-P3: Protein 73.7 6.2 0.00013 35.8 4.8 15 265-279 419-433 (445)
223 COG4103 Uncharacterized protei 73.6 35 0.00076 25.5 9.5 58 119-178 34-93 (148)
224 PLN03218 maturation of RBCL 1; 73.5 31 0.00067 35.2 10.0 12 236-247 508-519 (1060)
225 TIGR03764 ICE_PFGI_1_parB inte 73.4 53 0.0011 27.4 11.0 79 196-278 135-218 (258)
226 PHA03155 hypothetical protein; 73.3 20 0.00044 25.5 6.2 81 131-213 7-93 (115)
227 COG4359 Uncharacterized conser 73.2 44 0.00095 26.4 9.8 55 116-178 31-86 (220)
228 KOG1265 Phospholipase C [Lipid 73.0 51 0.0011 32.5 10.6 44 199-247 206-249 (1189)
229 PRK06402 rpl12p 50S ribosomal 72.9 27 0.00058 24.8 6.8 41 131-176 16-56 (106)
230 TIGR02553 SipD_IpaD_SspD type 72.8 59 0.0013 27.7 10.9 69 180-253 226-300 (308)
231 PF11593 Med3: Mediator comple 72.7 65 0.0014 28.2 10.5 51 129-180 5-55 (379)
232 PLN02228 Phosphoinositide phos 72.2 20 0.00044 33.5 7.8 63 114-178 23-91 (567)
233 PF14728 PHTB1_C: PTHB1 C-term 71.6 21 0.00046 31.6 7.5 46 200-245 287-332 (377)
234 cd08316 Death_FAS_TNFRSF6 Deat 71.5 31 0.00068 24.0 7.5 77 131-224 17-93 (97)
235 PLN02222 phosphoinositide phos 71.4 18 0.00038 34.0 7.2 62 115-178 25-89 (581)
236 PF07308 DUF1456: Protein of u 71.4 15 0.00032 23.7 4.9 47 198-246 14-60 (68)
237 COG2058 RPP1A Ribosomal protei 71.4 28 0.00061 24.6 6.5 50 187-244 7-56 (109)
238 PLN00138 large subunit ribosom 71.4 27 0.0006 25.0 6.7 51 186-243 6-56 (113)
239 cd01047 ACSF Aerobic Cyclase S 71.2 7.5 0.00016 32.8 4.3 98 113-215 23-126 (323)
240 KOG0103 Molecular chaperones H 71.1 7.9 0.00017 36.5 4.9 21 191-211 293-313 (727)
241 PLN03218 maturation of RBCL 1; 71.0 36 0.00078 34.7 9.8 21 235-255 542-562 (1060)
242 PLN02230 phosphoinositide phos 70.6 23 0.00049 33.4 7.8 65 113-178 27-101 (598)
243 PLN03077 Protein ECB2; Provisi 70.6 75 0.0016 31.5 12.0 62 183-247 540-601 (857)
244 KOG0506 Glutaminase (contains 69.9 19 0.00042 32.5 6.7 38 186-223 91-128 (622)
245 cd00076 H4 Histone H4, one of 69.6 32 0.00069 23.3 7.8 31 183-213 51-81 (85)
246 PF03352 Adenine_glyco: Methyl 69.5 3.3 7.1E-05 32.4 1.8 53 175-227 43-95 (179)
247 PLN02223 phosphoinositide phos 68.6 26 0.00055 32.5 7.5 66 181-247 16-92 (537)
248 PLN02508 magnesium-protoporphy 68.5 14 0.0003 31.7 5.4 80 146-230 36-123 (357)
249 PF04614 Pex19: Pex19 protein 68.5 35 0.00077 28.3 7.8 45 180-230 145-189 (248)
250 COG2036 HHT1 Histones H3 and H 68.2 31 0.00067 23.7 6.1 31 183-213 57-87 (91)
251 PF12631 GTPase_Cys_C: Catalyt 68.1 16 0.00036 23.7 4.7 46 181-226 23-72 (73)
252 PF10437 Lip_prot_lig_C: Bacte 68.0 14 0.0003 24.8 4.6 44 132-177 42-86 (86)
253 PF07862 Nif11: Nitrogen fixat 67.8 23 0.00049 20.9 5.3 42 171-219 7-48 (49)
254 PRK03968 DNA primase large sub 67.6 30 0.00065 30.3 7.2 44 129-178 119-162 (399)
255 PF03874 RNA_pol_Rpb4: RNA pol 67.2 43 0.00094 23.9 8.7 28 199-226 86-113 (117)
256 PLN03077 Protein ECB2; Provisi 66.8 67 0.0014 31.9 10.8 11 168-178 355-365 (857)
257 cd05831 Ribosomal_P1 Ribosomal 66.5 22 0.00049 25.0 5.4 45 127-176 13-57 (103)
258 COG3763 Uncharacterized protei 66.5 25 0.00054 22.7 5.0 43 118-161 26-68 (71)
259 PTZ00015 histone H4; Provision 66.2 43 0.00094 23.5 8.1 72 126-212 25-97 (102)
260 COG5173 SEC6 Exocyst complex s 66.2 34 0.00073 31.7 7.6 17 180-196 196-212 (742)
261 KOG2871 Uncharacterized conser 66.0 4.5 9.8E-05 35.1 2.1 62 181-244 309-371 (449)
262 PRK09430 djlA Dna-J like membr 65.9 25 0.00054 29.6 6.5 23 186-208 97-119 (267)
263 PRK00523 hypothetical protein; 65.8 24 0.00053 22.9 4.9 43 118-161 27-69 (72)
264 PRK13654 magnesium-protoporphy 65.6 9.7 0.00021 32.6 4.0 34 192-230 94-127 (355)
265 PRK07764 DNA polymerase III su 65.6 49 0.0011 32.7 9.3 28 195-226 231-258 (824)
266 PF09712 PHA_synth_III_E: Poly 65.4 46 0.001 28.4 8.1 22 235-256 268-289 (293)
267 COG1423 ATP-dependent DNA liga 65.0 16 0.00035 31.6 5.2 44 121-164 171-225 (382)
268 KOG0736 Peroxisome assembly fa 64.6 49 0.0011 32.2 8.6 53 112-164 748-805 (953)
269 PF10265 DUF2217: Uncharacteri 64.4 9.3 0.0002 35.0 3.9 17 179-195 298-314 (514)
270 KOG1264 Phospholipase C [Lipid 64.1 21 0.00046 34.6 6.2 65 182-248 145-209 (1267)
271 PF09824 ArsR: ArsR transcript 64.1 62 0.0013 24.6 9.3 47 197-246 86-132 (160)
272 CHL00185 ycf59 magnesium-proto 63.9 9.8 0.00021 32.5 3.7 81 145-230 35-123 (351)
273 PF07304 SRA1: Steroid recepto 63.7 38 0.00083 25.9 6.7 22 239-260 122-143 (157)
274 TIGR01209 RNA ligase, Pab1020 63.7 21 0.00046 31.4 5.8 43 121-163 163-216 (374)
275 PTZ00473 Plasmodium Vir superf 63.6 1E+02 0.0022 27.4 9.7 63 183-258 120-182 (420)
276 COG5069 SAC6 Ca2+-binding acti 63.5 31 0.00067 31.3 6.8 72 120-192 490-565 (612)
277 PHA01351 putative minor struct 63.4 1.5E+02 0.0032 28.6 11.8 27 197-225 544-570 (1070)
278 PF09373 PMBR: Pseudomurein-bi 63.4 13 0.00028 20.0 3.0 23 233-255 2-24 (33)
279 PF01023 S_100: S-100/ICaBP ty 63.2 18 0.00038 21.0 3.7 29 181-209 6-36 (44)
280 PF02284 COX5A: Cytochrome c o 63.0 29 0.00063 24.4 5.3 72 130-214 22-100 (108)
281 cd01047 ACSF Aerobic Cyclase S 63.0 13 0.00027 31.5 4.1 34 192-230 74-107 (323)
282 KOG4796 RNA polymerase II elon 62.9 57 0.0012 30.1 8.4 49 137-191 487-535 (604)
283 PF03672 UPF0154: Uncharacteri 62.2 31 0.00067 21.9 4.8 33 129-161 29-61 (64)
284 TIGR01628 PABP-1234 polyadenyl 62.2 76 0.0017 29.7 9.8 7 171-177 538-544 (562)
285 KOG3557 Epidermal growth facto 62.0 18 0.00039 33.9 5.2 19 233-251 313-338 (721)
286 PF07499 RuvA_C: RuvA, C-termi 61.7 30 0.00066 20.3 5.2 39 200-244 3-41 (47)
287 KOG4070 Putative signal transd 61.3 19 0.00042 27.1 4.4 65 115-179 12-85 (180)
288 KOG0039 Ferric reductase, NADH 61.0 20 0.00044 34.3 5.7 28 181-209 18-45 (646)
289 TIGR02029 AcsF magnesium-proto 60.3 9.5 0.00021 32.4 3.0 34 192-230 84-117 (337)
290 KOG4286 Dystrophin-like protei 60.3 27 0.00058 33.5 6.1 50 117-166 472-521 (966)
291 TIGR00624 tag DNA-3-methyladen 60.2 21 0.00046 27.9 4.8 43 115-157 53-95 (179)
292 PF04924 Pox_A6: Poxvirus A6 p 60.2 76 0.0016 27.4 8.2 65 216-281 177-245 (371)
293 KOG2653 6-phosphogluconate deh 59.9 1E+02 0.0023 27.1 9.1 17 110-126 149-165 (487)
294 PF04947 Pox_VLTF3: Poxvirus L 59.7 81 0.0018 24.5 10.4 85 129-213 50-135 (171)
295 PF02084 Bindin: Bindin; Inte 59.7 93 0.002 25.2 13.3 11 129-139 98-108 (238)
296 PF15326 TEX15: Testis express 59.4 32 0.00069 27.7 5.6 61 216-278 77-137 (233)
297 PF03672 UPF0154: Uncharacteri 58.4 28 0.00061 22.1 4.2 34 195-228 29-62 (64)
298 TIGR01639 P_fal_TIGR01639 Plas 58.4 30 0.00065 21.7 4.4 32 129-160 7-38 (61)
299 COG3956 Protein containing tet 57.8 1.1E+02 0.0023 26.7 8.8 27 183-209 371-397 (488)
300 cd00171 Sec7 Sec7 domain; Doma 57.6 92 0.002 24.5 11.5 33 130-163 45-77 (185)
301 PLN02223 phosphoinositide phos 57.4 44 0.00096 31.0 6.9 64 115-179 16-92 (537)
302 KOG2347 Sec5 subunit of exocys 57.4 61 0.0013 31.7 8.0 41 169-210 214-254 (934)
303 PRK10353 3-methyl-adenine DNA 57.1 4.9 0.00011 31.7 0.8 40 115-154 54-93 (187)
304 PF07308 DUF1456: Protein of u 56.8 42 0.00091 21.6 4.9 29 133-161 15-43 (68)
305 PRK01844 hypothetical protein; 56.7 41 0.00089 21.9 4.8 43 118-161 26-68 (72)
306 COG3793 TerB Tellurite resista 56.7 48 0.001 24.9 5.8 16 129-144 38-53 (144)
307 PRK08691 DNA polymerase III su 56.5 2E+02 0.0043 28.0 11.3 16 194-209 228-243 (709)
308 PF08461 HTH_12: Ribonuclease 56.4 18 0.00038 23.1 3.2 37 128-164 10-46 (66)
309 PRK00523 hypothetical protein; 56.4 33 0.00072 22.3 4.3 33 195-227 37-69 (72)
310 KOG2419 Phosphatidylserine dec 56.4 7.8 0.00017 36.2 2.0 57 152-208 438-532 (975)
311 CHL00091 apcE phycobillisome l 56.3 30 0.00065 33.9 5.8 23 164-186 304-326 (877)
312 PLN00035 histone H4; Provision 56.2 69 0.0015 22.6 8.6 30 183-212 67-96 (103)
313 PF08812 YtxC: YtxC-like famil 55.9 1.1E+02 0.0024 24.9 9.1 26 217-248 103-128 (221)
314 COG4867 Uncharacterized protei 55.8 1.2E+02 0.0027 27.2 9.0 55 191-247 286-340 (652)
315 PF08349 DUF1722: Protein of u 55.7 51 0.0011 23.7 5.9 35 211-247 63-97 (117)
316 PF09412 XendoU: Endoribonucle 55.7 23 0.0005 29.7 4.6 88 115-208 64-153 (265)
317 PF13623 SurA_N_2: SurA N-term 55.6 71 0.0015 24.0 6.8 13 167-179 48-60 (145)
318 KOG3197 Predicted hydrolases o 55.5 26 0.00056 27.4 4.4 59 210-276 123-181 (210)
319 TIGR02675 tape_meas_nterm tape 55.4 16 0.00036 24.0 3.0 13 166-178 29-41 (75)
320 PF10437 Lip_prot_lig_C: Bacte 55.3 34 0.00074 22.9 4.7 45 198-245 42-86 (86)
321 PHA03378 EBNA-3B; Provisional 54.9 1.4E+02 0.0031 28.6 9.6 83 5-87 705-804 (991)
322 PF04157 EAP30: EAP30/Vps36 fa 54.6 65 0.0014 26.1 7.0 31 166-196 112-151 (223)
323 PF07128 DUF1380: Protein of u 54.6 48 0.001 24.7 5.5 69 132-210 27-101 (139)
324 cd07176 terB tellurite resista 54.5 32 0.00069 24.0 4.7 16 129-144 16-31 (111)
325 PF03352 Adenine_glyco: Methyl 54.5 3.5 7.6E-05 32.2 -0.4 43 115-157 49-91 (179)
326 PF08976 DUF1880: Domain of un 54.4 9.6 0.00021 27.3 1.8 34 147-180 3-36 (118)
327 cd08327 CARD_RAIDD Caspase act 54.3 70 0.0015 22.1 6.6 59 194-259 32-90 (94)
328 PRK07764 DNA polymerase III su 54.2 2.4E+02 0.0051 28.2 12.0 14 165-178 231-244 (824)
329 PF00427 PBS_linker_poly: Phyc 53.9 88 0.0019 23.1 8.5 78 165-255 42-121 (131)
330 cd07176 terB tellurite resista 53.9 18 0.00039 25.3 3.3 15 263-277 91-105 (111)
331 PF12943 DUF3839: Protein of u 53.6 27 0.00059 26.7 4.2 64 197-266 90-163 (242)
332 PF06207 DUF1002: Protein of u 53.6 1.2E+02 0.0027 24.7 10.5 47 199-247 173-223 (225)
333 PF08461 HTH_12: Ribonuclease 53.6 28 0.00061 22.2 3.8 37 194-230 10-46 (66)
334 cd05831 Ribosomal_P1 Ribosomal 53.2 59 0.0013 22.9 5.6 43 195-244 15-57 (103)
335 PRK10547 chemotaxis protein Ch 53.1 47 0.001 32.0 6.7 7 220-226 68-74 (670)
336 PRK01381 Trp operon repressor; 52.9 77 0.0017 22.2 6.5 11 234-244 54-64 (99)
337 PHA03155 hypothetical protein; 52.3 78 0.0017 22.6 6.0 80 167-248 7-90 (115)
338 PF00404 Dockerin_1: Dockerin 52.2 24 0.00052 16.9 2.5 14 191-204 1-14 (21)
339 PHA03162 hypothetical protein; 52.2 92 0.002 22.9 6.5 80 132-213 13-102 (135)
340 PF06648 DUF1160: Protein of u 52.0 91 0.002 22.7 7.0 46 181-229 37-83 (122)
341 PF12307 DUF3631: Protein of u 51.8 64 0.0014 25.4 6.2 46 180-228 102-157 (184)
342 PLN03081 pentatricopeptide (PP 51.7 1.8E+02 0.004 28.1 10.7 24 168-191 159-182 (697)
343 KOG1096 Adenosine monophosphat 51.3 1.3E+02 0.0028 28.8 8.8 76 180-265 333-421 (768)
344 PLN03081 pentatricopeptide (PP 51.0 1.2E+02 0.0025 29.4 9.3 13 112-124 273-285 (697)
345 PF10876 DUF2669: Protein of u 50.9 76 0.0017 23.2 5.9 59 168-227 10-71 (133)
346 PHA02105 hypothetical protein 50.4 24 0.00053 21.7 2.8 49 198-246 5-56 (68)
347 PF04157 EAP30: EAP30/Vps36 fa 50.3 1.4E+02 0.003 24.3 9.8 60 169-230 87-149 (223)
348 KOG2079 Vacuolar assembly/sort 50.1 35 0.00076 34.2 5.3 13 235-247 1078-1090(1206)
349 TIGR01848 PHA_reg_PhaR polyhyd 49.7 55 0.0012 23.1 4.9 64 160-227 12-79 (107)
350 PRK11034 clpA ATP-dependent Cl 49.6 1.2E+02 0.0025 29.9 8.8 64 115-178 265-332 (758)
351 KOG3741 Poly(A) ribonuclease s 49.6 1.1E+02 0.0024 28.7 8.0 56 223-280 592-651 (655)
352 cd07316 terB_like_DjlA N-termi 49.4 85 0.0018 21.6 8.7 12 129-140 13-24 (106)
353 PRK10945 gene expression modul 49.2 45 0.00098 21.6 4.1 28 200-227 21-48 (72)
354 PF09184 PPP4R2: PPP4R2; Inte 49.2 1.7E+02 0.0036 25.0 10.1 92 135-226 3-107 (288)
355 PF09312 SurA_N: SurA N-termin 49.1 33 0.00072 24.7 4.0 34 209-246 62-95 (118)
356 KOG4629 Predicted mechanosensi 49.1 55 0.0012 31.6 6.4 57 182-247 405-461 (714)
357 KOG0307 Vesicle coat complex C 49.0 45 0.00097 33.4 5.9 29 236-264 635-663 (1049)
358 cd05832 Ribosomal_L12p Ribosom 49.0 94 0.002 22.0 6.9 41 197-244 16-56 (106)
359 COG3600 GepA Uncharacterized p 48.8 49 0.0011 24.9 4.8 43 168-210 48-90 (154)
360 PF13624 SurA_N_3: SurA N-term 48.7 33 0.00071 25.7 4.2 40 208-248 94-133 (154)
361 PF04391 DUF533: Protein of un 48.7 1.3E+02 0.0029 23.7 9.1 52 126-181 90-142 (188)
362 PF12419 DUF3670: SNF2 Helicas 48.5 43 0.00093 25.0 4.7 49 128-176 80-138 (141)
363 PF12995 DUF3879: Domain of un 48.4 77 0.0017 24.3 5.8 33 198-230 2-34 (186)
364 KOG2616 Pyridoxalphosphate-dep 48.3 72 0.0016 25.9 6.0 50 180-229 116-167 (266)
365 PRK08181 transposase; Validate 48.2 55 0.0012 27.5 5.8 48 195-247 4-51 (269)
366 PF09336 Vps4_C: Vps4 C termin 48.1 39 0.00085 21.2 3.7 27 131-157 29-55 (62)
367 KOG4814 Uncharacterized conser 47.8 1.6E+02 0.0036 28.1 8.9 51 175-228 290-341 (872)
368 COG3013 Uncharacterized conser 47.7 65 0.0014 24.1 5.2 10 148-157 58-67 (168)
369 KOG2301 Voltage-gated Ca2+ cha 47.4 56 0.0012 34.8 6.6 71 108-178 1410-1483(1592)
370 KOG2189 Vacuolar H+-ATPase V0 47.3 2E+02 0.0043 28.1 9.5 103 173-278 298-411 (829)
371 PF04614 Pex19: Pex19 protein 47.0 25 0.00055 29.1 3.5 80 115-195 101-190 (248)
372 PHA02335 hypothetical protein 46.9 69 0.0015 22.6 5.0 24 236-259 25-48 (118)
373 PF08976 DUF1880: Domain of un 46.9 13 0.00029 26.6 1.6 33 214-248 4-36 (118)
374 COG0541 Ffh Signal recognition 46.7 1.5E+02 0.0032 26.9 8.2 42 137-181 299-340 (451)
375 PHA02335 hypothetical protein 46.6 1E+02 0.0022 21.7 6.6 31 165-195 22-52 (118)
376 PF05674 DUF816: Baculovirus p 46.2 1.2E+02 0.0027 23.1 6.6 35 213-247 44-78 (171)
377 PF12631 GTPase_Cys_C: Catalyt 46.1 26 0.00056 22.8 2.8 39 120-158 28-70 (73)
378 KOG1954 Endocytosis/signaling 46.0 44 0.00094 29.6 4.8 36 212-249 472-507 (532)
379 cd07311 terB_like_1 tellurium 46.0 1.3E+02 0.0028 22.8 8.3 32 128-159 36-68 (150)
380 COG1200 RecG RecG-like helicas 45.9 2.5E+02 0.0054 27.1 9.9 75 137-220 195-269 (677)
381 PRK14951 DNA polymerase III su 45.9 2.8E+02 0.0061 26.6 11.1 102 134-258 189-297 (618)
382 PF01369 Sec7: Sec7 domain; I 45.8 1.5E+02 0.0032 23.4 8.6 104 130-247 49-166 (190)
383 PF05427 FIBP: Acidic fibrobla 45.8 2.1E+02 0.0046 25.2 9.4 67 194-276 284-350 (361)
384 smart00498 FH2 Formin Homology 45.8 31 0.00068 31.2 4.2 60 180-248 96-156 (432)
385 PF12825 DUF3818: Domain of un 45.8 2E+02 0.0043 25.2 8.9 47 234-281 290-337 (341)
386 PF14425 Imm3: Immunity protei 45.7 1.1E+02 0.0025 22.0 6.4 39 220-259 72-110 (117)
387 PF11363 DUF3164: Protein of u 45.4 87 0.0019 25.0 6.1 39 186-227 124-162 (195)
388 PF09888 DUF2115: Uncharacteri 45.3 32 0.0007 26.5 3.6 28 133-160 2-29 (163)
389 COG3763 Uncharacterized protei 45.2 66 0.0014 20.8 4.3 34 195-228 36-69 (71)
390 TIGR01834 PHA_synth_III_E poly 45.2 1.2E+02 0.0027 26.1 7.4 128 113-258 174-308 (320)
391 TIGR00135 gatC glutamyl-tRNA(G 45.1 91 0.002 21.3 5.6 29 198-226 1-29 (93)
392 PRK00034 gatC aspartyl/glutamy 45.0 98 0.0021 21.1 5.8 29 198-226 3-31 (95)
393 KOG1161 Protein involved in va 44.9 2E+02 0.0044 24.7 12.0 16 129-144 17-32 (310)
394 PRK12323 DNA polymerase III su 44.9 3E+02 0.0065 26.7 12.9 10 197-206 236-245 (700)
395 PF04361 DUF494: Protein of un 44.7 1.1E+02 0.0023 23.5 6.3 44 182-227 4-48 (155)
396 PRK03980 flap endonuclease-1; 44.6 2E+02 0.0043 24.5 10.0 12 149-160 175-186 (292)
397 PRK01844 hypothetical protein; 44.5 61 0.0013 21.1 4.1 33 195-227 36-68 (72)
398 KOG1954 Endocytosis/signaling 44.1 47 0.001 29.4 4.7 57 117-176 446-502 (532)
399 COG1321 TroR Mn-dependent tran 44.1 1.4E+02 0.0031 22.7 9.6 98 117-227 12-121 (154)
400 PF04695 Pex14_N: Peroxisomal 44.0 1.3E+02 0.0028 22.3 6.6 45 184-230 7-51 (136)
401 PRK14134 recX recombination re 44.0 2E+02 0.0044 24.4 11.0 44 197-246 75-118 (283)
402 PRK00819 RNA 2'-phosphotransfe 43.9 39 0.00085 26.5 3.9 15 163-177 29-43 (179)
403 cd07316 terB_like_DjlA N-termi 43.7 1.1E+02 0.0023 21.1 6.5 14 264-277 88-101 (106)
404 KOG1785 Tyrosine kinase negati 43.6 92 0.002 27.6 6.3 81 129-209 188-274 (563)
405 PF12238 MSA-2c: Merozoite sur 43.3 1.7E+02 0.0037 23.5 8.1 10 237-246 103-112 (205)
406 PF11269 DUF3069: Protein of u 43.3 20 0.00044 25.7 2.0 47 193-245 73-120 (121)
407 TIGR02639 ClpA ATP-dependent C 43.3 1.4E+02 0.0031 29.2 8.5 28 115-142 261-288 (731)
408 COG1298 FlhA Flagellar biosynt 43.0 3.2E+02 0.0068 26.4 10.9 36 191-226 524-560 (696)
409 COG1059 Thermostable 8-oxoguan 42.9 1.7E+02 0.0037 23.2 9.1 15 198-212 129-143 (210)
410 PF05812 Herpes_BLRF2: Herpesv 42.9 40 0.00086 24.3 3.5 82 132-215 3-94 (118)
411 TIGR02933 nifM_nitrog nitrogen 42.9 2E+02 0.0042 23.9 9.0 74 132-209 36-113 (256)
412 PTZ00111 DNA replication licen 42.8 2.7E+02 0.0059 28.0 10.1 13 131-143 767-779 (915)
413 PHA03074 late transcription fa 42.6 1.7E+02 0.0038 23.3 10.4 44 233-276 148-194 (225)
414 TIGR03685 L21P_arch 50S riboso 42.6 1.2E+02 0.0026 21.4 7.2 31 197-227 16-46 (105)
415 PF02761 Cbl_N2: CBL proto-onc 42.6 1.1E+02 0.0023 20.8 6.1 50 129-178 20-69 (85)
416 PF02433 FixO: Cytochrome C ox 42.5 1.6E+02 0.0034 24.1 7.1 28 138-165 154-181 (226)
417 PF08414 NADPH_Ox: Respiratory 42.5 1.2E+02 0.0025 21.2 7.3 61 184-249 33-94 (100)
418 PRK10391 oriC-binding nucleoid 42.3 46 0.00099 21.4 3.3 28 200-227 16-44 (71)
419 PRK14950 DNA polymerase III su 42.2 3.1E+02 0.0067 26.0 10.6 91 131-248 178-272 (585)
420 PF09808 SNAPc_SNAP43: Small n 42.2 1.7E+02 0.0037 23.1 10.4 28 151-180 4-31 (194)
421 TIGR02698 CopY_TcrY copper tra 42.2 1.4E+02 0.003 22.0 9.0 31 129-160 16-46 (130)
422 PF14423 Imm5: Immunity protei 42.2 59 0.0013 25.5 4.6 29 117-145 3-31 (183)
423 PF09415 CENP-X: CENP-S associ 42.0 85 0.0018 20.5 4.7 38 172-209 30-67 (72)
424 cd08306 Death_FADD Fas-associa 42.0 1E+02 0.0022 20.8 5.3 23 197-219 59-81 (86)
425 cd05832 Ribosomal_L12p Ribosom 41.9 1.2E+02 0.0027 21.4 6.7 42 131-177 16-57 (106)
426 COG1308 EGD2 Transcription fac 41.9 16 0.00034 26.5 1.3 29 197-227 82-110 (122)
427 KOG1096 Adenosine monophosphat 41.9 1E+02 0.0022 29.5 6.7 26 181-210 405-430 (768)
428 smart00222 Sec7 Sec7 domain. D 41.8 1.7E+02 0.0037 23.0 11.8 32 131-163 47-78 (187)
429 KOG0368 Acetyl-CoA carboxylase 41.8 2E+02 0.0043 30.7 9.0 118 137-259 794-927 (2196)
430 KOG1466 Translation initiation 41.5 2.1E+02 0.0046 24.0 12.0 9 116-124 12-20 (313)
431 PF02885 Glycos_trans_3N: Glyc 41.4 91 0.002 19.7 5.4 30 197-226 14-44 (66)
432 PF12238 MSA-2c: Merozoite sur 41.3 1.9E+02 0.004 23.3 7.4 8 202-209 85-92 (205)
433 COG3355 Predicted transcriptio 41.3 1.3E+02 0.0028 22.1 6.0 53 167-226 12-66 (126)
434 PF13543 KSR1-SAM: SAM like do 41.2 1.3E+02 0.0029 22.1 6.1 13 214-226 99-111 (129)
435 PF08044 DUF1707: Domain of un 41.2 42 0.00091 20.4 3.0 28 195-222 21-48 (53)
436 KOG4654 Uncharacterized conser 40.9 1.8E+02 0.0039 22.9 7.7 26 181-206 102-128 (252)
437 PF02337 Gag_p10: Retroviral G 40.9 1.2E+02 0.0026 20.8 6.5 47 202-248 13-62 (90)
438 TIGR03581 EF_0839 conserved hy 40.7 1.5E+02 0.0034 24.0 6.7 17 129-145 132-148 (236)
439 PF01885 PTS_2-RNA: RNA 2'-pho 40.6 42 0.0009 26.5 3.7 14 163-176 28-41 (186)
440 PF07261 DnaB_2: Replication i 40.4 99 0.0021 19.8 5.3 44 186-229 1-45 (77)
441 PF05435 Phi-29_GP3: Phi-29 DN 40.4 45 0.00097 26.5 3.7 36 200-246 200-235 (266)
442 COG5178 PRP8 U5 snRNP spliceos 40.3 32 0.00069 34.9 3.4 8 115-122 87-94 (2365)
443 COG1421 CRISPR system related 40.2 1.5E+02 0.0033 22.0 11.6 45 115-160 12-56 (137)
444 PRK14949 DNA polymerase III su 40.1 2.8E+02 0.006 28.0 9.6 10 148-157 178-187 (944)
445 KOG2419 Phosphatidylserine dec 40.0 21 0.00046 33.6 2.1 62 118-179 440-533 (975)
446 KOG2091 Predicted member of gl 40.0 2.5E+02 0.0054 24.3 10.7 75 194-268 237-354 (392)
447 COG2979 Uncharacterized protei 39.8 2E+02 0.0043 23.2 8.8 96 125-226 120-218 (225)
448 PF04136 Sec34: Sec34-like fam 39.8 1.4E+02 0.003 22.8 6.4 18 236-253 92-109 (157)
449 TIGR03573 WbuX N-acetyl sugar 39.7 68 0.0015 28.0 5.2 13 234-246 301-313 (343)
450 smart00190 IL4_13 Interleukins 39.7 80 0.0017 23.5 4.7 12 269-280 117-128 (138)
451 PRK00819 RNA 2'-phosphotransfe 39.7 55 0.0012 25.7 4.2 36 126-161 28-63 (179)
452 PF10897 DUF2713: Protein of u 39.4 84 0.0018 24.9 5.0 12 219-230 211-222 (246)
453 COG1059 Thermostable 8-oxoguan 39.3 1.2E+02 0.0025 24.1 5.7 22 193-214 66-87 (210)
454 TIGR03734 PRTRC_parB PRTRC sys 39.2 1.3E+02 0.0029 28.2 7.1 8 115-122 383-390 (554)
455 PF04558 tRNA_synt_1c_R1: Glut 39.1 1.5E+02 0.0032 22.9 6.4 47 181-228 85-131 (164)
456 PHA03102 Small T antigen; Revi 39.0 1.7E+02 0.0038 22.2 7.4 10 215-224 20-29 (153)
457 PHA03247 large tegument protei 39.0 5.2E+02 0.011 29.6 11.8 11 239-249 3112-3122(3151)
458 PF11848 DUF3368: Domain of un 38.9 61 0.0013 19.1 3.4 32 195-226 15-47 (48)
459 KOG0039 Ferric reductase, NADH 38.8 81 0.0018 30.3 5.9 68 111-179 14-89 (646)
460 PF09494 Slx4: Slx4 endonuclea 38.8 1E+02 0.0022 19.4 6.1 16 197-212 24-39 (64)
461 KOG4629 Predicted mechanosensi 38.6 1.2E+02 0.0027 29.3 7.0 59 151-210 404-462 (714)
462 PF15079 DUF4546: Domain of un 38.2 43 0.00093 25.6 3.2 28 150-180 67-94 (205)
463 PLN03223 Polycystin cation cha 37.6 3E+02 0.0066 29.0 9.6 39 136-174 1446-1486(1634)
464 PF09184 PPP4R2: PPP4R2; Inte 37.5 2.6E+02 0.0056 23.8 8.2 29 181-209 22-50 (288)
465 PF09107 SelB-wing_3: Elongati 37.3 76 0.0017 19.0 3.6 31 195-230 8-38 (50)
466 PF05794 Tcp11: T-complex prot 37.2 3.2E+02 0.0068 24.7 10.7 32 195-226 92-127 (441)
467 PRK05988 formate dehydrogenase 37.2 50 0.0011 25.2 3.5 48 112-162 6-53 (156)
468 PLN03228 methylthioalkylmalate 37.1 58 0.0013 30.2 4.5 46 202-247 431-476 (503)
469 PF11269 DUF3069: Protein of u 36.9 1.6E+02 0.0035 21.2 5.9 9 235-243 77-85 (121)
470 PF02459 Adeno_terminal: Adeno 36.8 79 0.0017 29.2 5.2 48 182-229 456-503 (548)
471 cd07177 terB_like tellurium re 36.7 1.3E+02 0.0029 20.2 6.6 16 129-144 13-28 (104)
472 PF09687 PRESAN: Plasmodium RE 36.6 1.6E+02 0.0034 21.0 9.9 107 129-249 3-115 (129)
473 PF01885 PTS_2-RNA: RNA 2'-pho 36.5 56 0.0012 25.8 3.8 38 125-162 26-63 (186)
474 KOG3423 Transcription initiati 36.4 70 0.0015 24.6 4.1 90 116-215 72-170 (176)
475 KOG3197 Predicted hydrolases o 36.3 2E+02 0.0043 22.7 6.5 14 181-194 130-143 (210)
476 PF06569 DUF1128: Protein of u 36.3 90 0.0019 20.3 4.0 29 181-211 39-67 (71)
477 PF12793 SgrR_N: Sugar transpo 36.2 1.1E+02 0.0024 22.0 5.0 41 183-229 6-46 (115)
478 PF07406 NICE-3: NICE-3 protei 36.2 2.2E+02 0.0047 22.5 8.5 69 183-252 110-184 (186)
479 PRK12402 replication factor C 36.2 2.7E+02 0.006 23.7 12.5 14 146-159 202-215 (337)
480 cd00923 Cyt_c_Oxidase_Va Cytoc 36.2 1.5E+02 0.0033 20.7 7.9 73 131-214 20-97 (103)
481 PRK10328 DNA binding protein, 36.1 95 0.0021 23.1 4.7 8 236-243 70-77 (134)
482 KOG1092 Ypt/Rab-specific GTPas 35.8 2.2E+02 0.0048 25.7 7.5 11 236-246 457-467 (484)
483 COG2979 Uncharacterized protei 35.8 1.1E+02 0.0025 24.5 5.3 13 195-207 124-136 (225)
484 PHA00649 hypothetical protein 35.7 1.2E+02 0.0026 19.5 4.7 32 155-186 21-52 (83)
485 PF12207 DUF3600: Domain of un 35.7 1.5E+02 0.0033 22.3 5.6 59 196-264 38-102 (162)
486 PF14164 YqzH: YqzH-like prote 35.6 1.2E+02 0.0026 19.3 4.7 29 182-210 9-38 (64)
487 COG3857 AddB ATP-dependent nuc 35.6 1.7E+02 0.0037 29.7 7.4 72 197-273 131-205 (1108)
488 TIGR02680 conserved hypothetic 35.5 2.7E+02 0.0058 29.6 9.4 61 197-259 200-260 (1353)
489 PRK13913 3-methyladenine DNA g 35.5 1.6E+02 0.0035 23.9 6.3 113 113-225 44-176 (218)
490 PRK14951 DNA polymerase III su 35.4 4.1E+02 0.0089 25.5 12.4 122 109-252 180-301 (618)
491 PF11838 ERAP1_C: ERAP1-like C 35.4 2.8E+02 0.006 23.5 11.1 124 117-248 109-245 (324)
492 PF15565 Imm16: Immunity prote 35.2 1.6E+02 0.0036 20.8 6.9 92 133-248 14-105 (106)
493 PF07957 DUF3294: Protein of u 34.9 2.5E+02 0.0053 22.8 7.5 113 127-245 65-205 (216)
494 PF07218 RAP1: Rhoptry-associa 34.8 3.9E+02 0.0085 25.1 9.1 127 128-258 443-580 (782)
495 CHL00091 apcE phycobillisome l 34.8 2.9E+02 0.0064 27.4 8.8 110 133-255 516-632 (877)
496 COG3855 Fbp Uncharacterized pr 34.8 3.7E+02 0.0079 24.7 8.8 124 119-255 51-189 (648)
497 PRK01022 hypothetical protein; 34.7 1.4E+02 0.0031 23.1 5.7 79 130-210 2-87 (167)
498 KOG0719 Molecular chaperone (D 34.7 2.6E+02 0.0057 23.0 7.6 84 127-230 79-168 (264)
499 cd07178 terB_like_YebE telluri 34.7 76 0.0017 21.9 3.9 77 195-277 13-89 (95)
500 PRK00404 tatB sec-independent 34.6 75 0.0016 23.8 3.9 60 168-227 4-83 (141)
No 1
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=100.00 E-value=7.2e-34 Score=218.93 Aligned_cols=166 Identities=45% Similarity=0.776 Sum_probs=158.1
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhc-CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhc
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSY-NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVD 191 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~-~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D 191 (283)
+..++..+|..+|+|+++.|+.+||..+|... ...++.++|+.|+.++|.+.+|.|+++||+.+|+.++.|+.+|+.||
T Consensus 55 ~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D 134 (221)
T KOG0037|consen 55 TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYD 134 (221)
T ss_pred ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcc
Confidence 55789999999999999999999999999854 56789999999999999999999999999999999999999999999
Q ss_pred cCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHH
Q 023338 192 RDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYE 271 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~ 271 (283)
+|++|.|+..||+.+|..+|++++.+.++.|+++++... +|+|.|++|+.+|..+.++.++|+++|.+..|.|+++++
T Consensus 135 ~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~--~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q~G~i~~~y~ 212 (221)
T KOG0037|consen 135 RDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFG--GGRIDFDDFIQCCVVLQRLTEAFRRRDTAQQGSITISYD 212 (221)
T ss_pred cCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhcccc--CCceeHHHHHHHHHHHHHHHHHHHHhccccceeEEEeHH
Confidence 999999999999999999999999999999999999775 389999999999999999999999999999999999999
Q ss_pred HHHHHhccc
Q 023338 272 NFMLAVLPF 280 (283)
Q Consensus 272 ~~~~~~~~~ 280 (283)
+|+.+++.+
T Consensus 213 dfl~~t~~~ 221 (221)
T KOG0037|consen 213 DFLQMTMSI 221 (221)
T ss_pred HHHHHhhcC
Confidence 999998863
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=163.18 Aligned_cols=139 Identities=28% Similarity=0.405 Sum_probs=129.6
Q ss_pred CCCCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh------
Q 023338 106 PSTFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------ 179 (283)
Q Consensus 106 p~~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------ 179 (283)
-+.++..+.++|+++|..+|+|.+|.|+.+||..+++.++...+..++.+|+..+|. +.+.|+|.+|+.++..
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~ 89 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGD 89 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCC
Confidence 345666777899999999999999999999999999999999999999999999999 8899999999999874
Q ss_pred -HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 180 -LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 180 -~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
.++++.+|+.||+|++|.|+..||+++|+.+|.++++++|+.|++.++.+++ |.|++++|++.+..
T Consensus 90 ~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~d--G~i~~~eF~~~~~~ 156 (160)
T COG5126 90 KEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGD--GEIDYEEFKKLIKD 156 (160)
T ss_pred cHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCC--ceEeHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999999999986 99999999998653
No 3
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.91 E-value=1.8e-23 Score=160.28 Aligned_cols=132 Identities=24% Similarity=0.388 Sum_probs=124.8
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH-----------H
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL-----------Q 181 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-----------~ 181 (283)
...+++++|+.||+|++|.|+..||..+++.++...+.+++..+++.+|.+++|.|+++||+.++... +
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 34679999999999999999999999999999999999999999999999999999999999998732 3
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.++++|+.||+|++|.|+.+||+.+|..+|..++.++++.+++.++.++| |.|+|++|++++.
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~d--g~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGD--GKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCC--CeEeHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999986 9999999999865
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.9e-22 Score=144.31 Aligned_cols=136 Identities=22% Similarity=0.320 Sum_probs=127.3
Q ss_pred CCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-------HHH
Q 023338 110 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-------LQN 182 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------~~~ 182 (283)
.+.+.++++.+|..||.+.+|.|+++||+.+++++|+....+++.+|++.+|++++|.|+|++|+..+.. .++
T Consensus 28 ~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eE 107 (172)
T KOG0028|consen 28 TEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEE 107 (172)
T ss_pred cHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHH
Confidence 4455578999999999999999999999999999999999999999999999999999999999998763 478
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
++.+|+.+|.|++|.|+..+|+++...||.+++++++.+|+..++.++| |.|+.+||+..+++
T Consensus 108 i~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~d--gevneeEF~~imk~ 170 (172)
T KOG0028|consen 108 IKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGD--GEVNEEEFIRIMKK 170 (172)
T ss_pred HHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhccccc--ccccHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999996 89999999988754
No 5
>PTZ00183 centrin; Provisional
Probab=99.84 E-value=8.1e-20 Score=141.35 Aligned_cols=138 Identities=23% Similarity=0.358 Sum_probs=125.5
Q ss_pred CCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-------H
Q 023338 108 TFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-------L 180 (283)
Q Consensus 108 ~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------~ 180 (283)
.+.+....+|+++|..+|.+++|.|+..||..+|+.++...+...+..+++.+|.+++|.|+++||+.++.. .
T Consensus 10 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~ 89 (158)
T PTZ00183 10 GLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPR 89 (158)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcH
Confidence 345556678999999999999999999999999999988888999999999999999999999999988654 3
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.++.+|+.+|.+++|.|+.+||..+|..++..++..+++.++..++.+++ |.|++++|+.++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~--g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGD--GEISEEEFYRIMKK 154 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC--CcCcHHHHHHHHhc
Confidence 478999999999999999999999999999999999999999999998885 89999999988764
No 6
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=1.1e-19 Score=130.16 Aligned_cols=135 Identities=20% Similarity=0.379 Sum_probs=119.7
Q ss_pred CCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCC--CCCccCHHHHHHHHHhH------
Q 023338 109 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNT--NARKIGPKEFIQVFHSL------ 180 (283)
Q Consensus 109 ~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~------ 180 (283)
+++.+..+++.+|..||+..|++|+..++.++|+++|.+.+..++.+.+...+.+ ...+|+|++|+-++..+
T Consensus 5 ~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q 84 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ 84 (152)
T ss_pred cCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc
Confidence 3455668999999999999999999999999999999999999999999888766 45789999999998753
Q ss_pred ---HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 181 ---QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 181 ---~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
+++.+..+.||++++|+|...||+++|..+|.+++++|++.++...... +|.|+|+.|++.+.
T Consensus 85 ~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~---nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 85 GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDS---NGCINYEAFVKHIM 150 (152)
T ss_pred CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHcccccc---CCcCcHHHHHHHHh
Confidence 5788889999999999999999999999999999999999999877433 48999999998653
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.83 E-value=2.1e-19 Score=137.54 Aligned_cols=133 Identities=23% Similarity=0.383 Sum_probs=121.4
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-------HHHHH
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-------LQNWR 184 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------~~~~~ 184 (283)
....+++++|+.+|.+++|.|+.+||..++..++...+.+.+..+++.+|.+.+|.|+++||+.++.. .+.+.
T Consensus 8 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~ 87 (149)
T PTZ00184 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIK 87 (149)
T ss_pred HHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHH
Confidence 34467999999999999999999999999999888888899999999999999999999999988763 25789
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 185 AMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 185 ~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.+|+.+|.+++|.|+.+||..+|..++..++.++++.+++.+|.+++ |.|+++||+.++.
T Consensus 88 ~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~--g~i~~~ef~~~~~ 147 (149)
T PTZ00184 88 EAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGD--GQINYEEFVKMMM 147 (149)
T ss_pred HHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCC--CcCcHHHHHHHHh
Confidence 99999999999999999999999999988999999999999998885 8999999998764
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.82 E-value=3.6e-19 Score=129.68 Aligned_cols=134 Identities=22% Similarity=0.318 Sum_probs=122.3
Q ss_pred CCCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-------
Q 023338 107 STFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------- 179 (283)
Q Consensus 107 ~~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------- 179 (283)
+.+...+.++++++|...|.|+||.|+.++|+..+.++|...++++++.+++. ..|-|+|.-|+.++..
T Consensus 24 amf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtdp 99 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTDP 99 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCCH
Confidence 44566778999999999999999999999999999999999999999999975 4578999999999874
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.+.+..+|+.||.+++|.|..+.|+++|.+.|.++++++|+.|++.+-.|.. |.|+|..|+..++
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~--G~~dy~~~~~~it 164 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKK--GNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccC--CceeHHHHHHHHH
Confidence 3679999999999999999999999999999999999999999999988764 8999999998876
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.74 E-value=2.1e-17 Score=128.06 Aligned_cols=86 Identities=29% Similarity=0.398 Sum_probs=82.6
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCC
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDR 194 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~ 194 (283)
..|+.+|+.+|+|++|+|+..||+.+|..+|+.++.+.++.|++++|...+|.|.|++|+.||..+..+.++|+.+|++.
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~~q 203 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDTAQ 203 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 78999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred CCccCH
Q 023338 195 SGKIDS 200 (283)
Q Consensus 195 ~G~i~~ 200 (283)
.|.|+.
T Consensus 204 ~G~i~~ 209 (221)
T KOG0037|consen 204 QGSITI 209 (221)
T ss_pred ceeEEE
Confidence 998754
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.70 E-value=4.7e-16 Score=130.74 Aligned_cols=134 Identities=22% Similarity=0.366 Sum_probs=123.2
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCcc-CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHHHHHHHHH
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQNWRAMFEK 189 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~f~~ 189 (283)
..+.+|+.+|+.+|.+++|.|+..+|.+.+..+... ...+.++.+++.+|.+.+|.+++.||...+.. ..++..+|..
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~ 90 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQS 90 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhh
Confidence 344679999999999999999999999999988766 77889999999999999999999999998875 4578999999
Q ss_pred hccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 190 VDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 190 ~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
.|.+.||.|+.+|+.+.|+.++..++++++..+++..|.++. +.|+++||..++..
T Consensus 91 iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~--~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 91 IDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGK--ATIDLEEWRDHLLL 146 (463)
T ss_pred hccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCC--eeeccHHHHhhhhc
Confidence 999999999999999999999999999999999999999985 89999999998763
No 11
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.68 E-value=1.1e-15 Score=119.18 Aligned_cols=140 Identities=19% Similarity=0.298 Sum_probs=110.7
Q ss_pred CCCCCchhHHHHHHHHccC-CCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCc-cCHHHHHHHHHh-------
Q 023338 109 FPPGTDPNIVACFQLADRD-NSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARK-IGPKEFIQVFHS------- 179 (283)
Q Consensus 109 ~~~~~~~~l~~~F~~~d~d-~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~-i~~~ef~~~~~~------- 179 (283)
++......|...|+++|.+ .+|.|+.+||..+.... .+ -...+|+..++.+.++. |+|++|+..+..
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LN---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cC---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccH
Confidence 4545556788899999999 99999999999998322 22 24567788888888787 999999999873
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCC--H----HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVS--P----VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~--~----~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
.++++-+|+.||.+++|.|+.+||..++..+ +...+ + +.++.++..+|.|+| |+|+++||++++.+...+.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~D--G~IsfeEf~~~v~~~P~~~ 180 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGD--GKISFEEFCKVVEKQPDLL 180 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCC--CcCcHHHHHHHHHcCccHH
Confidence 3489999999999999999999999999986 33333 3 345666777888886 9999999999988765554
Q ss_pred HH
Q 023338 253 EK 254 (283)
Q Consensus 253 ~~ 254 (283)
+.
T Consensus 181 ~~ 182 (187)
T KOG0034|consen 181 EK 182 (187)
T ss_pred HH
Confidence 43
No 12
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.67 E-value=2.3e-15 Score=117.33 Aligned_cols=142 Identities=19% Similarity=0.288 Sum_probs=118.7
Q ss_pred chhHHHHHHHHccCC-CCccCHHHHHHHHHhcCc-cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHH
Q 023338 114 DPNIVACFQLADRDN-SGLIDDKELQGALSSYNQ-SFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRA 185 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~-~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~ 185 (283)
..+|+.+++.|-.+. +|.++.++|+.+++.+.. .-....++.+++.+|.+++|.|+|.||+..+.. .+.++.
T Consensus 25 ~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w 104 (193)
T KOG0044|consen 25 KKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKW 104 (193)
T ss_pred HHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhh
Confidence 467888888887765 999999999999998764 455667799999999999999999999998874 357888
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHc----CC-------CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSL----GF-------AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEK 254 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l----~~-------~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~ 254 (283)
+|+++|.|++|.|+.+|+-.++.++ +. ..-++.++.+++.+|.|+| |.|+++||+..+...+.+...
T Consensus 105 ~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~D--g~lT~eef~~~~~~d~~i~~~ 182 (193)
T KOG0044|consen 105 AFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKD--GKLTLEEFIEGCKADPSILRA 182 (193)
T ss_pred hheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCC--CcccHHHHHHHhhhCHHHHHH
Confidence 9999999999999999999988764 21 1235668899999999997 999999999999987777776
Q ss_pred hhh
Q 023338 255 FKE 257 (283)
Q Consensus 255 f~~ 257 (283)
+..
T Consensus 183 l~~ 185 (193)
T KOG0044|consen 183 LEQ 185 (193)
T ss_pred hhh
Confidence 644
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.48 E-value=2.6e-12 Score=100.32 Aligned_cols=141 Identities=18% Similarity=0.291 Sum_probs=114.4
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCC-CCccCHHHHHHHHHh-------HHHHHHHHHHhccCCCCccCHHHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTNTN-ARKIGPKEFIQVFHS-------LQNWRAMFEKVDRDRSGKIDSNEL 203 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~-~g~i~~~ef~~~~~~-------~~~~~~~f~~~D~~~~G~i~~~el 203 (283)
++.+.+..+.+ ...++..+++.+.+.+..+. +|.++.++|..++.. ..-...+|+.||+|++|.|+..||
T Consensus 9 ~~~~~~e~l~~--~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Ef 86 (193)
T KOG0044|consen 9 LQPESLEQLVQ--QTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEF 86 (193)
T ss_pred CCcHHHHHHHH--hcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHH
Confidence 34344444444 34677889999998887665 899999999999874 356788999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH-----------------HHHHHHhhhcCCCCCcee
Q 023338 204 REALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV-----------------KGLTEKFKERDTTYSGSA 266 (283)
Q Consensus 204 ~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~-----------------~~~~~~f~~~d~~~~g~i 266 (283)
...|+.+.....++-++.+++.+|.|++ |.|+++|++.++..+ ++...+|+.+|.|++|.|
T Consensus 87 i~als~~~rGt~eekl~w~F~lyD~dgd--G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~l 164 (193)
T KOG0044|consen 87 ICALSLTSRGTLEEKLKWAFRLYDLDGD--GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKL 164 (193)
T ss_pred HHHHHHHcCCcHHHHhhhhheeecCCCC--ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcc
Confidence 9999888777778889999999999996 999999999887743 245568999999999987
Q ss_pred eeeHHHHHHHhc
Q 023338 267 TFTYENFMLAVL 278 (283)
Q Consensus 267 ~~~~~~~~~~~~ 278 (283)
|+++|+..+.
T Consensus 165 --T~eef~~~~~ 174 (193)
T KOG0044|consen 165 --TLEEFIEGCK 174 (193)
T ss_pred --cHHHHHHHhh
Confidence 7788776553
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.46 E-value=3.3e-12 Score=97.87 Aligned_cols=125 Identities=22% Similarity=0.314 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCC-----CHHH
Q 023338 150 LRTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAV-----SPVV 218 (283)
Q Consensus 150 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~-----~~~~ 218 (283)
...++.+|..+|.+++|.|+..|+..+++. ...+..+++.+|.+++|.|+.+||..++....... +.++
T Consensus 7 ~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 7 ILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred HHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 356788899999999999999999999885 47899999999999999999999999998765432 3458
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 219 LDLLVTKFDKTGGKSKAIEYDNFIECCLTV------KGLTEKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 219 i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
+.++|+.+|.+++ |.|+.+|+..++..+ ..+...++..|.+++|.| ++++|+.+..
T Consensus 87 l~eaF~~fD~d~~--G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i--~f~ef~~~m~ 148 (151)
T KOG0027|consen 87 LKEAFRVFDKDGD--GFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV--NFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHccCCC--CcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE--eHHHHHHHHh
Confidence 9999999999985 999999999999864 367778889999999988 6688887764
No 15
>PTZ00183 centrin; Provisional
Probab=99.45 E-value=4.9e-12 Score=97.63 Aligned_cols=125 Identities=23% Similarity=0.293 Sum_probs=104.1
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHH
Q 023338 151 RTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVSPVVLDLLV 223 (283)
Q Consensus 151 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~~~~i~~l~ 223 (283)
+++..+|..+|.+++|.|+++||..++.. ...+..+|+.+|.+++|.|+.+||..++... ......+.++.++
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F 96 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAF 96 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45677788899999999999999988873 3468899999999999999999999987764 3445677899999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhcCCCCCceeeeeHHHHHHHhcc
Q 023338 224 TKFDKTGGKSKAIEYDNFIECCLTV------KGLTEKFKERDTTYSGSATFTYENFMLAVLP 279 (283)
Q Consensus 224 ~~~d~~~d~~g~i~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 279 (283)
+.+|.+++ |.|+.+||..++..+ ..+..+|..+|.+++|.| ++++|...+..
T Consensus 97 ~~~D~~~~--G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~ 154 (158)
T PTZ00183 97 RLFDDDKT--GKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEI--SEEEFYRIMKK 154 (158)
T ss_pred HHhCCCCC--CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC--cHHHHHHHHhc
Confidence 99999885 899999999998753 357778999999999875 88888877654
No 16
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.44 E-value=7.7e-12 Score=94.36 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=107.8
Q ss_pred cCCHH---HHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHHHHHHHHcC-CCCCH
Q 023338 147 SFSLR---TVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNELREALMSLG-FAVSP 216 (283)
Q Consensus 147 ~~~~~---~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~-~~~~~ 216 (283)
.++.+ ++++.|..+|.+.+|.|+..|+..+++. ...+.++|..+|. +++.|++.+|-.+|.... ..-++
T Consensus 13 ~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~ 91 (160)
T COG5126 13 QLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKE 91 (160)
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcH
Confidence 44444 4466677789999999999999999874 4689999999999 999999999999998754 44568
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhcCCCCCceeeeeHHHHHHHhccc
Q 023338 217 VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV------KGLTEKFKERDTTYSGSATFTYENFMLAVLPF 280 (283)
Q Consensus 217 ~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 280 (283)
+++.++++.||.|+| |.|+..+++.++..+ +.+...++.++.+++|.| ++++|...++..
T Consensus 92 Eel~~aF~~fD~d~d--G~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i--~~~eF~~~~~~~ 157 (160)
T COG5126 92 EELREAFKLFDKDHD--GYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEI--DYEEFKKLIKDS 157 (160)
T ss_pred HHHHHHHHHhCCCCC--ceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceE--eHHHHHHHHhcc
Confidence 999999999999996 999999999999864 467788999999999987 888888776543
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.43 E-value=8.3e-12 Score=95.26 Aligned_cols=124 Identities=22% Similarity=0.291 Sum_probs=101.9
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHhH------HHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 023338 152 TVRLLMYTFTNTNARKIGPKEFIQVFHSL------QNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVSPVVLDLLVT 224 (283)
Q Consensus 152 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~~~~i~~l~~ 224 (283)
.+..++..+|.+++|.|+++||..++..+ +.+..+|+.+|.+++|.|+.+||..++... ........+..+++
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~ 91 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFK 91 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHH
Confidence 45677788899999999999999887642 478999999999999999999999988764 33345567889999
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhcCCCCCceeeeeHHHHHHHhcc
Q 023338 225 KFDKTGGKSKAIEYDNFIECCLTV------KGLTEKFKERDTTYSGSATFTYENFMLAVLP 279 (283)
Q Consensus 225 ~~d~~~d~~g~i~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~ 279 (283)
.+|.+++ |.|+.++|..++..+ ..+..+|+.+|.+++|.| ++++|+..+.+
T Consensus 92 ~~D~~~~--g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i--~~~ef~~~~~~ 148 (149)
T PTZ00184 92 VFDRDGN--GFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQI--NYEEFVKMMMS 148 (149)
T ss_pred hhCCCCC--CeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcC--cHHHHHHHHhc
Confidence 9999885 999999999988653 356678889998888875 89999877653
No 18
>PLN02964 phosphatidylserine decarboxylase
Probab=99.39 E-value=3.8e-12 Score=116.31 Aligned_cols=114 Identities=16% Similarity=0.220 Sum_probs=96.2
Q ss_pred CCCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcC-ccCCHHH---HHHHHHHhcCCCCCccCHHHHHHHHHh---
Q 023338 107 STFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRT---VRLLMYTFTNTNARKIGPKEFIQVFHS--- 179 (283)
Q Consensus 107 ~~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~-~~~~~~~---~~~l~~~~d~~~~g~i~~~ef~~~~~~--- 179 (283)
+.+...+.++++++|+.+|.|++|.| |..+++.++ ...++++ ++.+++.+|.+++|.|+++||+.++..
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~ 210 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN 210 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc
Confidence 35555667889999999999999997 888899998 4777776 799999999999999999999998874
Q ss_pred ---HHHHHHHHHHhccCCCCccCHHHHHHHHHH-------------cCCCCCH-HHHHHHHH
Q 023338 180 ---LQNWRAMFEKVDRDRSGKIDSNELREALMS-------------LGFAVSP-VVLDLLVT 224 (283)
Q Consensus 180 ---~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-------------l~~~~~~-~~i~~l~~ 224 (283)
.++++++|+.||.|++|.|+.+||+++|.. ++..++. ++++.|++
T Consensus 211 ~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH 272 (644)
T PLN02964 211 LVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIH 272 (644)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHH
Confidence 357999999999999999999999999998 5555555 55666663
No 19
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=5.3e-12 Score=103.78 Aligned_cols=153 Identities=16% Similarity=0.241 Sum_probs=120.2
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-------------
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------------- 179 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------------- 179 (283)
...++.+++..+|.+++|.|+..||..++.......-..++.+-+...|.+.+|.|+|+|++..+..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4467999999999999999999999999877655555666677778889999999999999877641
Q ss_pred -------HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH--
Q 023338 180 -------LQNWRAMFEKVDRDRSGKIDSNELREALMSLGF-AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK-- 249 (283)
Q Consensus 180 -------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~-~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~-- 249 (283)
+..-++-|+..|.|++|.++.+||..+|.--.. .+..-.|.+-+...|+|+| |.|+++||+.=+....
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~D--G~I~~eEfigd~~~~~~~ 232 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGD--GKISLEEFIGDLYSHEGN 232 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCC--CceeHHHHHhHHhhccCC
Confidence 345677899999999999999999999875322 2445566777778888886 9999999998766422
Q ss_pred ---------HHHHHhhhcCCCCCceee
Q 023338 250 ---------GLTEKFKERDTTYSGSAT 267 (283)
Q Consensus 250 ---------~~~~~f~~~d~~~~g~i~ 267 (283)
.-...+..+|+|++|.++
T Consensus 233 ~~epeWv~~Ere~F~~~~DknkDG~L~ 259 (325)
T KOG4223|consen 233 EEEPEWVLTEREQFFEFRDKNKDGKLD 259 (325)
T ss_pred CCCcccccccHHHHHHHhhcCCCCccC
Confidence 233445577888888874
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.37 E-value=5.1e-12 Score=86.80 Aligned_cols=68 Identities=15% Similarity=0.241 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHhcc-CCCCccCHHHHHHHHHH-cCCCCCH-HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEKVDR-DRSGKIDSNELREALMS-LGFAVSP-VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 179 ~~~~~~~~f~~~D~-~~~G~i~~~el~~~l~~-l~~~~~~-~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.+..++.+|+.||+ +++|.|+.+||+.+|+. ++..+++ ++++.|++.+|.|+| |+|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~D--G~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQD--SKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCC--CCCcHHHHHHHHHHH
Confidence 35678999999999 99999999999999999 8888888 999999999999996 999999999998876
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=4.7e-11 Score=88.23 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHHHHHHHH-cCCCCCHHHHHHH
Q 023338 150 LRTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNELREALMS-LGFAVSPVVLDLL 222 (283)
Q Consensus 150 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-l~~~~~~~~i~~l 222 (283)
...++..+..+|.+++|.|+.+|+...+.. .+++..+...+|++++|.|++++|.+++.. ++..-+.++|..+
T Consensus 32 ~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~a 111 (172)
T KOG0028|consen 32 KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKA 111 (172)
T ss_pred HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHH
Confidence 357788899999999999999999655553 467888889999999999999999998764 5666699999999
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHH------HHHHHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 223 VTKFDKTGGKSKAIEYDNFIECCLTVK------GLTEKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 223 ~~~~d~~~d~~g~i~~~eF~~~~~~~~------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
|+.+|.|++ |+|++.+|+++...|. .+.+....+|.+.+|.| +.++|+.+..
T Consensus 112 frl~D~D~~--Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgev--neeEF~~imk 169 (172)
T KOG0028|consen 112 FRLFDDDKT--GKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEV--NEEEFIRIMK 169 (172)
T ss_pred HHcccccCC--CCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccc--cHHHHHHHHh
Confidence 999999995 9999999999988763 45566668899988876 8888887653
No 22
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.7e-11 Score=103.10 Aligned_cols=159 Identities=23% Similarity=0.359 Sum_probs=113.2
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhc------Cc----------cCCHHHHHHH-HHHhcCCCCCccCHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSY------NQ----------SFSLRTVRLL-MYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~------~~----------~~~~~~~~~l-~~~~d~~~~g~i~~~ef~~~~ 177 (283)
..++-+|+.||.|+||.|+.+||..+.+-+ +. ....+....| ..-|-.++++.++++||+.++
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 457788999999999999999998876432 11 1111122222 333578889999999999999
Q ss_pred HhH--HHHHHHHHHhccCCCCccCHHHHHHHHHHcC-CCCCH--HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 178 HSL--QNWRAMFEKVDRDRSGKIDSNELREALMSLG-FAVSP--VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 178 ~~~--~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~-~~~~~--~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
.++ +-++.-|..+|...+|.|+..+|.++|.... .+..+ ..++++.+.++.++ ..|+++||..+++.+.++.
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~---~gISl~Ef~~Ff~Fl~~l~ 389 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDG---KGISLQEFKAFFRFLNNLN 389 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCC---CCcCHHHHHHHHHHHhhhh
Confidence 876 4577789999999999999999999887653 22222 23455666666543 4699999888777543211
Q ss_pred ---------------------------------------HHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 253 ---------------------------------------EKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 253 ---------------------------------------~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
.+|..||.|++|.+ +.++|+..+-
T Consensus 390 dfd~Al~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~L--S~~EFl~Vmk 452 (489)
T KOG2643|consen 390 DFDIALRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTL--SHKEFLAVMK 452 (489)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcc--cHHHHHHHHH
Confidence 15778899988876 7778876643
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.1e-11 Score=101.97 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=105.2
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcC-ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-----------HHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-----------LQN 182 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-----------~~~ 182 (283)
...++.|+..|.|++|.++.+||..+|.--- -.+..-.|+.-+..+|+|++|.|+++||+.-+.. +.+
T Consensus 163 ~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~E 242 (325)
T KOG4223|consen 163 ARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTE 242 (325)
T ss_pred HHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCccccccc
Confidence 3457789999999999999999999885322 2233445677778899999999999999977652 234
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
-...|...|+|++|.|+.+|++.++.--+....+.+.+.|+...|.|+| |+||++|.+.-
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD--~kLs~eEIl~~ 302 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKD--GKLSKEEILEH 302 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCcc--ccccHHHHhhC
Confidence 4566777899999999999999999888888889999999999999997 99999998764
No 24
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.26 E-value=5.9e-11 Score=81.66 Aligned_cols=68 Identities=19% Similarity=0.361 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhc-cCCCC-ccCHHHHHHHHHH-----cCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEKVD-RDRSG-KIDSNELREALMS-----LGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 179 ~~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-----l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.+..++++|+.|| +|++| .|+.+||+.+|+. ++...++++++++++.+|.+++ |+|+|++|+.++..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~d--G~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGD--GECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCC--CcCcHHHHHHHHHHH
Confidence 3567899999998 79999 6999999999999 8988999999999999999986 999999999987764
No 25
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.23 E-value=4.5e-11 Score=82.14 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=61.2
Q ss_pred hhHHHHHHHHcc-CCCCccCHHHHHHHHHh-cCccCCH-HHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 115 PNIVACFQLADR-DNSGLIDDKELQGALSS-YNQSFSL-RTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 115 ~~l~~~F~~~d~-d~~g~i~~~el~~~l~~-~~~~~~~-~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
..|+++|+.||+ +++|.|+..||+.+|+. ++..++. ++++.|++.+|.|++|.|+|+||+.++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 568999999999 99999999999999999 8877887 899999999999999999999999988765
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.20 E-value=6.8e-11 Score=77.22 Aligned_cols=62 Identities=34% Similarity=0.587 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVV----LDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~----i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
.++.+|+.+|+|++|.|+.+||+.++..++......+ ++.+++.+|.++| |.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~d--G~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGD--GRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSS--SSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc--CCCcHHHHhccC
Confidence 3688999999999999999999999999987665544 4555889999985 999999999874
No 27
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.20 E-value=3e-10 Score=83.42 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHH
Q 023338 179 SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT-------VKGL 251 (283)
Q Consensus 179 ~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~-------~~~~ 251 (283)
.+.+++++|...|.|++|.|+.++|+.+|.++|...++++|+.|+... .|-|+|.-|+.++.. ...+
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea------~gPINft~FLTmfGekL~gtdpe~~I 103 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA------PGPINFTVFLTMFGEKLNGTDPEEVI 103 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC------CCCeeHHHHHHHHHHHhcCCCHHHHH
Confidence 478899999999999999999999999999999999999999999988 478999999998874 2468
Q ss_pred HHHhhhcCCCCCceeeeeH
Q 023338 252 TEKFKERDTTYSGSATFTY 270 (283)
Q Consensus 252 ~~~f~~~d~~~~g~i~~~~ 270 (283)
..+|+.||.+++|.|..+.
T Consensus 104 ~~AF~~FD~~~~G~I~~d~ 122 (171)
T KOG0031|consen 104 LNAFKTFDDEGSGKIDEDY 122 (171)
T ss_pred HHHHHhcCccCCCccCHHH
Confidence 8999999999999985543
No 28
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.20 E-value=8.2e-11 Score=76.83 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=48.7
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHH----HHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLR----TVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~----~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
+|+++|+.+|+|++|.|+.+||+.+++.++...... .+..+++.+|.+++|.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 488999999999999999999999999998665443 44444677777777777777776653
No 29
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=3.6e-10 Score=102.27 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=9.3
Q ss_pred cccHHHHHHHHHHHH
Q 023338 235 AIEYDNFIECCLTVK 249 (283)
Q Consensus 235 ~i~~~eF~~~~~~~~ 249 (283)
.-.-|.|...+..++
T Consensus 761 l~e~EQF~vvm~~vk 775 (1102)
T KOG1924|consen 761 LPEPEQFVVVMSQVK 775 (1102)
T ss_pred CCCHHHHhHHHhhcc
Confidence 445577777776554
No 30
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.15 E-value=3.5e-10 Score=77.83 Aligned_cols=66 Identities=14% Similarity=0.230 Sum_probs=60.8
Q ss_pred hhHHHHHHHHc-cCCCC-ccCHHHHHHHHHh-----cCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 115 PNIVACFQLAD-RDNSG-LIDDKELQGALSS-----YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 115 ~~l~~~F~~~d-~d~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
..|+++|+.+| +|++| .|+..||+.+|+. ++...++++++.+++.+|.+++|.|+|+||+.++..+
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 57999999998 79999 5999999999999 8888899999999999999999999999999887654
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.15 E-value=6.9e-10 Score=77.77 Aligned_cols=74 Identities=14% Similarity=0.343 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcc-CC-CCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDR-DR-SGKIDSNELREALMS-----LGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 180 ~~~~~~~f~~~D~-~~-~G~i~~~el~~~l~~-----l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
+..++.+|+.||. |+ +|.|+.+||+.+|.. ++...++++++.+++.+|.+++ |.|+|++|+.++..+.-+.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~d--g~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRD--GKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCC--CcCcHHHHHHHHHHHHHHH
Confidence 4578999999997 97 699999999999986 5677899999999999999885 8999999999988766554
Q ss_pred HHh
Q 023338 253 EKF 255 (283)
Q Consensus 253 ~~f 255 (283)
..+
T Consensus 85 ~~~ 87 (94)
T cd05031 85 EEY 87 (94)
T ss_pred HHH
Confidence 444
No 32
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=99.14 E-value=2.2e-09 Score=92.77 Aligned_cols=161 Identities=16% Similarity=0.282 Sum_probs=116.7
Q ss_pred CCCCchhHHHHHHHH---ccCCCCccCHHHHHHHHHh-cC-ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh----H
Q 023338 110 PPGTDPNIVACFQLA---DRDNSGLIDDKELQGALSS-YN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS----L 180 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~---d~d~~g~i~~~el~~~l~~-~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~----~ 180 (283)
+..+..++|.+|-.+ +++....++.++|....-. ++ ...+.+.+..+-...|..+||.|+|+||+.+-.. .
T Consensus 28 kra~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pD 107 (694)
T KOG0751|consen 28 KRADPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPD 107 (694)
T ss_pred ccCChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCch
Confidence 345557888888754 5566677888887665443 33 3455666666666778888999999999876332 3
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcC------CCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH--HHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLG------FAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT--VKGLT 252 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~------~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~--~~~~~ 252 (283)
...+.+|..||+.++|.++.+++++++..+. ++++.+.|...+. .+. ...++|.||.+++++ ++.-+
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~--~r~~ny~~f~Q~lh~~~~E~~~ 182 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIR--KRHLNYAEFTQFLHEFQLEHAE 182 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHH--HHhccHHHHHHHHHHHHHHHHH
Confidence 4567799999999999999999999998753 2445555555333 333 256999999999996 45678
Q ss_pred HHhhhcCCCCCceeee-eHHHHHH
Q 023338 253 EKFKERDTTYSGSATF-TYENFML 275 (283)
Q Consensus 253 ~~f~~~d~~~~g~i~~-~~~~~~~ 275 (283)
++|++.|+.++|.|+. ++.+.+.
T Consensus 183 qafr~~d~~~ng~is~Ldfq~imv 206 (694)
T KOG0751|consen 183 QAFREKDKAKNGFISVLDFQDIMV 206 (694)
T ss_pred HHHHHhcccCCCeeeeechHhhhh
Confidence 8999999999999864 4444333
No 33
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.14 E-value=9.6e-10 Score=93.81 Aligned_cols=132 Identities=20% Similarity=0.266 Sum_probs=100.8
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHh-cCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH---------------
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSS-YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH--------------- 178 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~--------------- 178 (283)
..+.+.|+.+|.+++|.|++.+...++.+ ++.++.-..+..-+ ...+.+|.+.+.+....+.
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvet 541 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVET 541 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHH
Confidence 34667799999999999999998888865 34555544443322 2344456676666655443
Q ss_pred ---hHHHHHHHHHHhccCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH
Q 023338 179 ---SLQNWRAMFEKVDRDRSGKIDSNELREALMSL----GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKG 250 (283)
Q Consensus 179 ---~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l----~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~ 250 (283)
....+..+|+.+|+|.+|.|+.+||+.+++-+ ...+++++|.++.+.+|.++| |.|++.||++.++.+.+
T Consensus 542 LYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkD--G~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 542 LYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKD--GKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCC--CcccHHHHHHHHhhhcc
Confidence 22467889999999999999999999987754 456789999999999999997 99999999998776543
No 34
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.13 E-value=5.6e-10 Score=76.79 Aligned_cols=68 Identities=13% Similarity=0.348 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHhcc-CC-CCccCHHHHHHHHH---HcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEKVDR-DR-SGKIDSNELREALM---SLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 179 ~~~~~~~~f~~~D~-~~-~G~i~~~el~~~l~---~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.+..+..+|..||. ++ +|.|+.+||+++|+ .++..+++++++++++.+|.+++ |+|+|+||+.++..+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~d--G~Idf~EFv~lm~~l 80 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKD--QEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHHH
Confidence 34567889999998 77 89999999999997 37889999999999999999986 999999999988765
No 35
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.12 E-value=5.2e-10 Score=80.74 Aligned_cols=89 Identities=17% Similarity=0.303 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH---------HH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV---------KG 250 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~---------~~ 250 (283)
+.+++++|..||..++|.|+...+..+|+++|.+.++++|...+..++.++-...+|+||+|+-++..+ ..
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 467899999999999999999999999999999999999999999998875334689999998887754 36
Q ss_pred HHHHhhhcCCCCCceeee
Q 023338 251 LTEKFKERDTTYSGSATF 268 (283)
Q Consensus 251 ~~~~f~~~d~~~~g~i~~ 268 (283)
+.+.++.||++++|.|.-
T Consensus 90 fvegLrvFDkeg~G~i~~ 107 (152)
T KOG0030|consen 90 FVEGLRVFDKEGNGTIMG 107 (152)
T ss_pred HHHHHHhhcccCCcceeH
Confidence 777889999999999854
No 36
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.10 E-value=6.8e-10 Score=77.45 Aligned_cols=69 Identities=16% Similarity=0.427 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHhc-cCCCC-ccCHHHHHHHHHH-c----CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEKVD-RDRSG-KIDSNELREALMS-L----GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 179 ~~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-l----~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
.+..++++|..|| +|++| .|+.+||+.+|.. + ....++.+++.+++.+|.++| |.|+|+||+.++..+-
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~d--G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKD--NEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCC--CCCCHHHHHHHHHHHH
Confidence 3567889999999 78998 5999999999976 2 334577899999999999986 9999999999988763
No 37
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.08 E-value=9.1e-10 Score=76.83 Aligned_cols=68 Identities=15% Similarity=0.389 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhc-cCCCC-ccCHHHHHHHHHH-cC----CCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVD-RDRSG-KIDSNELREALMS-LG----FAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 180 ~~~~~~~f~~~D-~~~~G-~i~~~el~~~l~~-l~----~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
++.++++|+.|| ++++| .|+.+||+.+|+. ++ ...++++++.+++.+|.+++ |.|+|++|+.++..+-
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~--G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGD--GEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCC--CcCcHHHHHHHHHHHH
Confidence 467899999997 99999 5999999999985 44 35688999999999999885 9999999999887653
No 38
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.07 E-value=1.6e-09 Score=75.63 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=58.7
Q ss_pred hhHHHHHHHHc-cCCCC-ccCHHHHHHHHHh-cC----ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 115 PNIVACFQLAD-RDNSG-LIDDKELQGALSS-YN----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 115 ~~l~~~F~~~d-~d~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
..|+++|+.|| +|++| .|+..||+.+|+. ++ ...+.++++.|++.+|.+++|.|+|+||+.++..+.
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 57999999997 99999 5999999999985 43 345789999999999999999999999999887653
No 39
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.06 E-value=1.5e-09 Score=76.43 Aligned_cols=70 Identities=13% Similarity=0.284 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTE 253 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~ 253 (283)
+..++.+|+.+|++++|.|+.+||+++|..++ +++++++.++..++.+++ |.|+++||+.++..+.+...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~--g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDND--GELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCC--CCcCHHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999865 688999999999998875 89999999999887765544
No 40
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.04 E-value=1e-09 Score=77.22 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHH
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWR 184 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~ 184 (283)
.+..+++++|+.+|+|++|.|+.+||+.+|+.++ ++.++++.+++.+|.+.+|.|+++||+.++..+..+.
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3456799999999999999999999999999864 6789999999999999999999999999887655443
No 41
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.04 E-value=2.6e-09 Score=74.53 Aligned_cols=67 Identities=13% Similarity=0.242 Sum_probs=57.2
Q ss_pred hhHHHHHHHHc-cCCCC-ccCHHHHHHHHHh-c----CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 115 PNIVACFQLAD-RDNSG-LIDDKELQGALSS-Y----NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 115 ~~l~~~F~~~d-~d~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
..++++|..|| +|++| +|+..||+.+|+. + ....+..+++.|++.+|.+++|.|+|+||+.++..+.
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 56888899999 78998 5999999999976 2 3344778999999999999999999999999987653
No 42
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.03 E-value=1.4e-08 Score=79.51 Aligned_cols=129 Identities=18% Similarity=0.232 Sum_probs=101.6
Q ss_pred CCHHHHHH---HHHHhcCC-CCCccCHHHHHHHHHh--HHHHHHHHHHhccCCCCc-cCHHHHHHHHHHcCCCCCHH-HH
Q 023338 148 FSLRTVRL---LMYTFTNT-NARKIGPKEFIQVFHS--LQNWRAMFEKVDRDRSGK-IDSNELREALMSLGFAVSPV-VL 219 (283)
Q Consensus 148 ~~~~~~~~---l~~~~d~~-~~g~i~~~ef~~~~~~--~~~~~~~f~~~D~~~~G~-i~~~el~~~l~~l~~~~~~~-~i 219 (283)
++..++.. .+..++.+ .+|.|+.+||..+... .-....+++.||.+++|. |+.++|.++|.........+ .+
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 44555444 44556777 8999999999988743 234677899999999999 99999999999875555544 78
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHH-------------HHHHHhhhcCCCCCceeeeeHHHHHHHhccc
Q 023338 220 DLLVTKFDKTGGKSKAIEYDNFIECCLTVK-------------GLTEKFKERDTTYSGSATFTYENFMLAVLPF 280 (283)
Q Consensus 220 ~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~-------------~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~ 280 (283)
+-+++.+|.+++ |.|+.+|+..++..+- -+...|..+|.|++|.| ++++|.+.+.+.
T Consensus 107 ~faF~vYD~~~~--G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~I--sfeEf~~~v~~~ 176 (187)
T KOG0034|consen 107 RFAFRVYDLDGD--GFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKI--SFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHhcCCCC--CcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcC--cHHHHHHHHHcC
Confidence 889999999996 9999999998877532 12346889999999987 888998887765
No 43
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.02 E-value=2.5e-09 Score=74.94 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=59.0
Q ss_pred hhHHHHHHHHcc-CC-CCccCHHHHHHHHHh-----cCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 115 PNIVACFQLADR-DN-SGLIDDKELQGALSS-----YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 115 ~~l~~~F~~~d~-d~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
..|+++|..+|. |+ +|.|+..||+.+|+. ++...+.++++.+++.+|.+++|.|+|+||+.++..+
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 579999999997 97 799999999999986 4667789999999999999999999999999888754
No 44
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.00 E-value=3.3e-09 Score=77.16 Aligned_cols=100 Identities=18% Similarity=0.306 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCCCccCHHHHHHHHHhH-------HHHHHHHHHhccCCCCccCHHHHHHHHHHcC-CCCCHHHHH----H
Q 023338 154 RLLMYTFTNTNARKIGPKEFIQVFHSL-------QNWRAMFEKVDRDRSGKIDSNELREALMSLG-FAVSPVVLD----L 221 (283)
Q Consensus 154 ~~l~~~~d~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~-~~~~~~~i~----~ 221 (283)
++|...+..++.|.++|++|+.++..+ -++..+|+.+|-|+++.|-.++|+..|..|- ..++++++. +
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 566778888999999999999998743 2467789999999999999999999999873 356777654 5
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHh
Q 023338 222 LVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKF 255 (283)
Q Consensus 222 l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f 255 (283)
++..+|.|+| |+|++.||..++.+-..+...|
T Consensus 154 vieEAD~DgD--gkl~~~eFe~~i~raPDFlsTF 185 (189)
T KOG0038|consen 154 VIEEADLDGD--GKLSFAEFEHVILRAPDFLSTF 185 (189)
T ss_pred HHHHhcCCCC--CcccHHHHHHHHHhCcchHhhh
Confidence 5666777775 9999999999877655555444
No 45
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.99 E-value=4e-09 Score=68.88 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=55.6
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
+.+|+.+|++++|.|+.+||+.+|..++. ++++++.+++.++.+++ |.|++++|+.++..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~--g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKD--GKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCC--CcCCHHHHHHHHHHHH
Confidence 56899999999999999999999998864 88999999999999885 8999999999887654
No 46
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.97 E-value=3.5e-09 Score=69.16 Aligned_cols=61 Identities=20% Similarity=0.239 Sum_probs=55.3
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
+++|+.+|+|++|.|+.+||+.+++.++. +.++++.+++.+|.+.+|.|+++||+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 67899999999999999999999998764 78899999999999999999999999887653
No 47
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.97 E-value=5e-09 Score=72.18 Aligned_cols=68 Identities=18% Similarity=0.341 Sum_probs=58.2
Q ss_pred hHHHHHHHHHH-hccCCCC-ccCHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEK-VDRDRSG-KIDSNELREALMSL-----GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 179 ~~~~~~~~f~~-~D~~~~G-~i~~~el~~~l~~l-----~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.+..|..+|+. +|+++++ .|+.+||+.+|... +...+..+++.+++.+|.|+| |.|+|+||+.++..+
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~D--G~I~f~EF~~l~~~l 81 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSD--GQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCC--CcCcHHHHHHHHHHH
Confidence 35678899999 7888876 99999999999875 345667899999999999986 999999999998876
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.97 E-value=1.7e-08 Score=85.76 Aligned_cols=120 Identities=15% Similarity=0.236 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHhH-------HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Q 023338 150 LRTVRLLMYTFTNTNARKIGPKEFIQVFHSL-------QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLL 222 (283)
Q Consensus 150 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l 222 (283)
+..++.||+.+|.+++|.|++.+....+..+ +....+|+..|.|.+|.++.+||++.+.+ .+.++.++
T Consensus 13 ~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-----~E~~l~~~ 87 (463)
T KOG0036|consen 13 DIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-----KELELYRI 87 (463)
T ss_pred HHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-----hHHHHHHH
Confidence 3467899999999999999999999777643 56788999999999999999999999975 56778899
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHH------HHHHHHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 223 VTKFDKTGGKSKAIEYDNFIECCLTV------KGLTEKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 223 ~~~~d~~~d~~g~i~~~eF~~~~~~~------~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
|...|.++| |+|+.+|..+.+.++ +.....|+..|+++++.| ++++|.+..+
T Consensus 88 F~~iD~~hd--G~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I--~~~e~rd~~l 145 (463)
T KOG0036|consen 88 FQSIDLEHD--GKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATI--DLEEWRDHLL 145 (463)
T ss_pred HhhhccccC--CccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeee--ccHHHHhhhh
Confidence 999999996 999999999988853 455667888888888776 5666655443
No 49
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.96 E-value=6.1e-09 Score=72.05 Aligned_cols=68 Identities=16% Similarity=0.306 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhcc--CCCCccCHHHHHHHHHH-cCCC----CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 179 SLQNWRAMFEKVDR--DRSGKIDSNELREALMS-LGFA----VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 179 ~~~~~~~~f~~~D~--~~~G~i~~~el~~~l~~-l~~~----~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.++.++.+|+.||+ +++|.|+.+||..++.. ++.. .++++++.++..++.+++ |.|+|++|+.++..+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~--g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKD--GKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCC--CcCcHHHHHHHHHHH
Confidence 35678999999999 89999999999999976 4543 458999999999999885 899999999988764
No 50
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.95 E-value=8.1e-09 Score=71.04 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=59.5
Q ss_pred hhHHHHHHHHcc-CC-CCccCHHHHHHHHH---hcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 115 PNIVACFQLADR-DN-SGLIDDKELQGALS---SYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 115 ~~l~~~F~~~d~-d~-~g~i~~~el~~~l~---~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
..|-.+|..+|. |+ +|.|+.+||+++|+ .++...+.+++.++++.+|.+++|.|+|+||+.++..+.
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 457788999998 67 88999999999996 368889999999999999999999999999998887653
No 51
>PLN02964 phosphatidylserine decarboxylase
Probab=98.94 E-value=4e-09 Score=96.80 Aligned_cols=94 Identities=14% Similarity=0.158 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHh-----H--HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHH
Q 023338 151 RTVRLLMYTFTNTNARKIGPKEFIQVFHS-----L--QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLV 223 (283)
Q Consensus 151 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-----~--~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~ 223 (283)
+++++.|..+|.+++|.+ +..+...+.. . ..++.+|+.+|.|++|.|+.+||..++..++...++++++++|
T Consensus 143 ~elkeaF~lfD~dgdG~i-Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaF 221 (644)
T PLN02964 143 ESACESFDLLDPSSSNKV-VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELF 221 (644)
T ss_pred HHHHHHHHHHCCCCCCcC-HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHH
Confidence 466777888999999987 5555554441 1 2378999999999999999999999999988878899999999
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHH
Q 023338 224 TKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 224 ~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.+|.|++ |.|+++||..++..
T Consensus 222 k~fDkDgd--G~Is~dEL~~vL~~ 243 (644)
T PLN02964 222 KAADLNGD--GVVTIDELAALLAL 243 (644)
T ss_pred HHhCCCCC--CcCCHHHHHHHHHh
Confidence 99999985 99999999998876
No 52
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.94 E-value=4e-09 Score=72.96 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=58.7
Q ss_pred CchhHHHHHHHHcc--CCCCccCHHHHHHHHHh-cCcc----CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 113 TDPNIVACFQLADR--DNSGLIDDKELQGALSS-YNQS----FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 113 ~~~~l~~~F~~~d~--d~~g~i~~~el~~~l~~-~~~~----~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
+...++++|..+|+ |++|.|+..||+.+++. ++.. .+.++++.|++.+|.+++|.|++++|+.++..+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 34668999999999 89999999999999976 4433 358899999999999999999999999988754
No 53
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.1e-07 Score=86.69 Aligned_cols=8 Identities=0% Similarity=0.094 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 023338 201 NELREALM 208 (283)
Q Consensus 201 ~el~~~l~ 208 (283)
+.|..++.
T Consensus 765 EQF~vvm~ 772 (1102)
T KOG1924|consen 765 EQFVVVMS 772 (1102)
T ss_pred HHHhHHHh
Confidence 33444333
No 54
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.90 E-value=6.6e-09 Score=64.80 Aligned_cols=52 Identities=37% Similarity=0.587 Sum_probs=48.2
Q ss_pred CCCccCHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 194 RSGKIDSNELREALMSLGFA-VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~~-~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
++|.|+.+||+.+|..++.. +++++++.|+..+|.+++ |.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~--G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGD--GYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSS--SSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCC--CCCCHHHHHHHHHh
Confidence 47999999999999888999 999999999999999996 99999999998764
No 55
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.90 E-value=4.1e-08 Score=70.87 Aligned_cols=61 Identities=18% Similarity=0.295 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
...+..+|..+|+|++|.|+.+||..++ ....+..++.++..+|.++| |.||++||+.++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~D--g~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKD--GSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCC--CCCCHHHHHHHHh
Confidence 4678899999999999999999999886 23457889999999999996 9999999999973
No 56
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.87 E-value=2.3e-08 Score=68.88 Aligned_cols=66 Identities=15% Similarity=0.282 Sum_probs=56.8
Q ss_pred hhHHHHHHH-HccCCCC-ccCHHHHHHHHHhc-----CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 115 PNIVACFQL-ADRDNSG-LIDDKELQGALSSY-----NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 115 ~~l~~~F~~-~d~d~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
..|..+|+. +|+|+++ .|+.+||+.++... ....+..+++.+++.+|.+++|.|+|+||+.++..+
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 568999998 7788876 99999999999875 335567899999999999999999999999888765
No 57
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.87 E-value=4.7e-09 Score=83.07 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcC---ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYN---QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
....|..+|++.|.|.+++|+..|++..+..-. +.-..++.+..|+.+|.+++|.|+++||..-+.
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 346688999999999999999999999876431 222345667788889999999999999986654
No 58
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.84 E-value=5.4e-08 Score=84.43 Aligned_cols=160 Identities=16% Similarity=0.258 Sum_probs=116.3
Q ss_pred chhHHHHHHHHccCCCCccCHHHHHHHHHhcC------ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh--HHHHHH
Q 023338 114 DPNIVACFQLADRDNSGLIDDKELQGALSSYN------QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS--LQNWRA 185 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~------~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~--~~~~~~ 185 (283)
+...+.+|..||+..++.++.+++.+++.... .+.+-+.++..+. .+....+++.||..++.. ++.-+.
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~~r~~ny~~f~Q~lh~~~~E~~~q 183 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIRKRHLNYAEFTQFLHEFQLEHAEQ 183 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 56678889999999999999999988887643 3344455555443 333456889999988875 467889
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHH---HHHHHHHHHHHhhhcCCCC
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIE---CCLTVKGLTEKFKERDTTY 262 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~---~~~~~~~~~~~f~~~d~~~ 262 (283)
+|+..|+.++|.|+.-++..++.+....+....|++.+..+....+ ...+++..|.. ++..++.++.+|..+. +.
T Consensus 184 afr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~-~H~vSf~yf~afnslL~~melirk~y~s~~-~~ 261 (694)
T KOG0751|consen 184 AFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGND-SHQVSFSYFNAFNSLLNNMELIRKIYSSLA-GT 261 (694)
T ss_pred HHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCC-ccccchHHHHHHHHHHhhHHHHHHHHHHhc-cc
Confidence 9999999999999999999999988777777778877766654443 24677666554 5556677777777664 44
Q ss_pred CceeeeeHHHHHHHhc
Q 023338 263 SGSATFTYENFMLAVL 278 (283)
Q Consensus 263 ~g~i~~~~~~~~~~~~ 278 (283)
+.++.++.++++....
T Consensus 262 ~~d~~~~kdq~~~~a~ 277 (694)
T KOG0751|consen 262 RKDVEVTKDQFSLAAQ 277 (694)
T ss_pred ccchhhhHHHHHHHHH
Confidence 4556678888776543
No 59
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.82 E-value=1.7e-08 Score=62.94 Aligned_cols=52 Identities=27% Similarity=0.354 Sum_probs=48.1
Q ss_pred CCCccCHHHHHHHHHhcCcc-CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 128 NSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
.+|.|+.++|+.+|..++.. ++.+++..|++.+|.+++|.|+++||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 36899999999999888988 99999999999999999999999999988753
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.81 E-value=2.6e-08 Score=63.51 Aligned_cols=61 Identities=26% Similarity=0.458 Sum_probs=56.0
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
++.+|+.+|.+++|.|+..|+..+++.++...+.+.+..+++.+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 6788999999999999999999999999988899999999999999999999999998764
No 61
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.80 E-value=3.3e-08 Score=62.98 Aligned_cols=61 Identities=34% Similarity=0.604 Sum_probs=55.9
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
+..+|+.+|.+++|.|+.+|+..++..++...+.+++..++..++.+++ |.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGD--GKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCC--CeEeHHHHHHHh
Confidence 5678999999999999999999999999999999999999999998875 899999998764
No 62
>PF14658 EF-hand_9: EF-hand domain
Probab=98.76 E-value=3.9e-08 Score=62.44 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=57.5
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 185 AMFEKVDRDRSGKIDSNELREALMSLGF-AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 185 ~~f~~~D~~~~G~i~~~el~~~l~~l~~-~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.+|..||+++.|.|...+|..+|++++. ..++++++.+.+.+|-++. ++.|+++.|+..++.+
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~-~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGR-DGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCC-CceEeHHHHHHHHHHh
Confidence 3699999999999999999999999988 8999999999999999884 5899999999987753
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.74 E-value=4.6e-08 Score=83.74 Aligned_cols=124 Identities=19% Similarity=0.322 Sum_probs=83.9
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhcCccC---CHHHHHHHHHHhcCCCCCccCHHHHHHHHHh---HHHHHHHHHHhccC
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSYNQSF---SLRTVRLLMYTFTNTNARKIGPKEFIQVFHS---LQNWRAMFEKVDRD 193 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~~~~~---~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~---~~~~~~~f~~~D~~ 193 (283)
=|..+|+..+|.|+..+|..+|-.+...- ....++++.+.++.+ +..|+++||..++.. +..+..+...| ..
T Consensus 323 EF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~Al~fy-~~ 400 (489)
T KOG2643|consen 323 EFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIALRFY-HM 400 (489)
T ss_pred HHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHHHHHH-HH
Confidence 35566666666777777666665433111 112445555556554 344788888777654 33444444444 23
Q ss_pred CCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 194 RSGKIDSNELREALMS-LGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~-l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
.++.|+..+|+++... .|..+++..++.++..||.|+| |.|+.+||+..+++
T Consensus 401 Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~D--g~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 401 AGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENND--GTLSHKEFLAVMKR 453 (489)
T ss_pred cCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCC--CcccHHHHHHHHHH
Confidence 4578888999887765 4888898899999999999997 99999999999875
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.73 E-value=4.3e-08 Score=62.27 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=56.2
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHhcCc-cCCHHHHHHHHHHhcCCCC-CccCHHHHHHHHH
Q 023338 119 ACFQLADRDNSGLIDDKELQGALSSYNQ-SFSLRTVRLLMYTFTNTNA-RKIGPKEFIQVFH 178 (283)
Q Consensus 119 ~~F~~~d~d~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~~~ 178 (283)
.+|..||+++.|+|.+.+|...|+.++. ...+.++++|.+.+|.++. +.|+|++|+..++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 4699999999999999999999999998 8999999999999999888 9999999998875
No 65
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.72 E-value=6.2e-08 Score=66.80 Aligned_cols=67 Identities=10% Similarity=0.272 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccC--CCCccCHHHHHHHHH-HcCCCCC----HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRD--RSGKIDSNELREALM-SLGFAVS----PVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 180 ~~~~~~~f~~~D~~--~~G~i~~~el~~~l~-~l~~~~~----~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+..+..+|+.++.. .+|.|+.+||+.+|. .++..++ +++++.+++.+|.+++ |.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~d--G~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQD--GQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCC--CcCcHHHHHHHHHHH
Confidence 45678889999866 479999999999997 5565555 8999999999999885 999999999987754
No 66
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.72 E-value=1.1e-07 Score=82.02 Aligned_cols=122 Identities=16% Similarity=0.297 Sum_probs=88.3
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHH--hH------------------HH---HHHHHHHhccCCCCccCHHHHHHHHH
Q 023338 152 TVRLLMYTFTNTNARKIGPKEFIQVFH--SL------------------QN---WRAMFEKVDRDRSGKIDSNELREALM 208 (283)
Q Consensus 152 ~~~~l~~~~d~~~~g~i~~~ef~~~~~--~~------------------~~---~~~~f~~~D~~~~G~i~~~el~~~l~ 208 (283)
++.+|+-.++...+|+|++.|.+.... .+ +. +.--|..+|+|.+|.|+.++|.+.-.
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d 305 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGD 305 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhc
Confidence 445666667888899999999876532 11 11 22238888999999999999988654
Q ss_pred HcCCCCCHHHHHHHHHHHhhCC--CCCCcccHHHHHHHHHHHH------HHHHHhhhcCCCCCceeeeeHHHHHHH
Q 023338 209 SLGFAVSPVVLDLLVTKFDKTG--GKSKAIEYDNFIECCLTVK------GLTEKFKERDTTYSGSATFTYENFMLA 276 (283)
Q Consensus 209 ~l~~~~~~~~i~~l~~~~d~~~--d~~g~i~~~eF~~~~~~~~------~~~~~f~~~d~~~~g~i~~~~~~~~~~ 276 (283)
. .++...|+++|..+.... ..+|+|+|++|+.++..++ .++-+|+.+|.+++|.+++..-+++..
T Consensus 306 ~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fye 378 (493)
T KOG2562|consen 306 H---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYE 378 (493)
T ss_pred c---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHH
Confidence 3 356778999998432221 1248999999999988654 577789999999999998876555443
No 67
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.69 E-value=1.2e-07 Score=72.92 Aligned_cols=77 Identities=22% Similarity=0.358 Sum_probs=65.7
Q ss_pred HHHHHHHHH-hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 170 PKEFIQVFH-SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 170 ~~ef~~~~~-~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+.||..+-+ .++.+..+|+.+|.+.||.|+..||+.+|..||..-+---++.|+..+|.|.| |+|+|-||+.+++..
T Consensus 87 yteF~eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~d--gklSfreflLIfrka 164 (244)
T KOG0041|consen 87 YTEFSEFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFD--GKLSFREFLLIFRKA 164 (244)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccc--cchhHHHHHHHHHHH
Confidence 445553332 46788999999999999999999999999999988777778999999999996 999999999988753
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.68 E-value=9.7e-08 Score=68.96 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHh--HHHHHHHHHHhccCCCCccCHHHHHHHH
Q 023338 152 TVRLLMYTFTNTNARKIGPKEFIQVFHS--LQNWRAMFEKVDRDRSGKIDSNELREAL 207 (283)
Q Consensus 152 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~--~~~~~~~f~~~D~~~~G~i~~~el~~~l 207 (283)
.+.-.|..+|.|++|.|+.+|+..++.. ...+..+|+.+|.|++|.||.+||...|
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3444444444444444444444433211 1233444555555555555555555544
No 69
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.64 E-value=6.4e-07 Score=68.97 Aligned_cols=70 Identities=17% Similarity=0.263 Sum_probs=62.1
Q ss_pred CCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 110 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
...+.+.+..+|+.+|.++||.|+..||+.+|..+|..-+.-.++.+++.+|.|.+|+|+|.||+.+++.
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 4445566778999999999999999999999999998877888899999999999999999999888764
No 70
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.59 E-value=5.3e-07 Score=87.20 Aligned_cols=130 Identities=12% Similarity=0.247 Sum_probs=93.9
Q ss_pred CCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCC--HH-----HHHHHHHHhcCCCCCccCHHHHHHHHHh-
Q 023338 108 TFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFS--LR-----TVRLLMYTFTNTNARKIGPKEFIQVFHS- 179 (283)
Q Consensus 108 ~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~--~~-----~~~~l~~~~d~~~~g~i~~~ef~~~~~~- 179 (283)
+.+..+..++.-+|+.||++++|.++..+|+.+|+++|..+. ++ +++.++..+|.+.+|.|++.+++.++..
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 445556677888999999999999999999999999998772 23 7899999999999999999999988763
Q ss_pred -------HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCC------CCcccHHHHHHHH
Q 023338 180 -------LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGK------SKAIEYDNFIECC 245 (283)
Q Consensus 180 -------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~------~g~i~~~eF~~~~ 245 (283)
.+++.++|+.+|. +.-+|+.+++..-| +.++++-.+..+....+. ...|.|.+|+..+
T Consensus 2326 ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~l-------treqaefc~s~m~~~~e~~~~~s~q~~l~y~dfv~sl 2396 (2399)
T KOG0040|consen 2326 ETENILSSEEIEDAFRALDA-GKPYVTKEELYQNL-------TREQAEFCMSKMKPYAETSSGRSDQVALDYKDFVNSL 2396 (2399)
T ss_pred ccccccchHHHHHHHHHhhc-CCccccHHHHHhcC-------CHHHHHHHHHHhhhhcccccCCCccccccHHHHHHHH
Confidence 3578888888888 56677776655443 445555444443221110 2356777776653
No 71
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.58 E-value=2.9e-07 Score=63.46 Aligned_cols=66 Identities=9% Similarity=0.213 Sum_probs=55.4
Q ss_pred hhHHHHHHHHccC--CCCccCHHHHHHHHH-hcCccCC----HHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 115 PNIVACFQLADRD--NSGLIDDKELQGALS-SYNQSFS----LRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 115 ~~l~~~F~~~d~d--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
..+..+|+.++.. .++.|+.+||+.+|. .++..++ .++++.+++.+|.+++|.|+|+||+.++..+
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4678889999875 478999999999996 5555555 8899999999999999999999999887643
No 72
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.51 E-value=9e-07 Score=76.59 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=88.7
Q ss_pred HHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHH----hcCCCCCccCHHHHHHHHHhH------HHHHHHHHHh
Q 023338 121 FQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYT----FTNTNARKIGPKEFIQVFHSL------QNWRAMFEKV 190 (283)
Q Consensus 121 F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~----~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~ 190 (283)
|..+|+|+++.|+.++|...-. ..++...+++||+. +-...+|+|++++|+-++..+ ..+...|+.+
T Consensus 284 FweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 284 FWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred HhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 7788999999999999877653 23457788999983 334457889999999998754 3588899999
Q ss_pred ccCCCCccCHHHHHHHHHHc-------CC-CC-CHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 191 DRDRSGKIDSNELREALMSL-------GF-AV-SPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 191 D~~~~G~i~~~el~~~l~~l-------~~-~~-~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
|.+++|.|+..|++.+.... +. .+ -++.+..|+..+.-.. .++|++.+|..+
T Consensus 361 Dld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~--~~kItLqDlk~s 421 (493)
T KOG2562|consen 361 DLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPED--ENKITLQDLKGS 421 (493)
T ss_pred eccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccC--CCceeHHHHhhc
Confidence 99999999999998776542 21 12 2455556666665333 378999999874
No 73
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.46 E-value=3.1e-06 Score=57.80 Aligned_cols=67 Identities=12% Similarity=0.303 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHH-----cCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMS-----LGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-----l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
+..+..+|..|-.+ ++.++..||+.+|.. +....+.+.|+.+++..|.++| |.|+|.||+.++..+-
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~D--g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRD--GKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCC--CcCcHHHHHHHHHHHH
Confidence 45678889998744 569999999999975 3445578899999999999997 9999999999988764
No 74
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.46 E-value=2.4e-07 Score=49.33 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=22.0
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
+++.+|+.+|+|++|.|+.+||..+++.|
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 35677888888888888888888877653
No 75
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.44 E-value=3.4e-06 Score=77.44 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=110.6
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH---HHHHHHHHHhc
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL---QNWRAMFEKVD 191 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~f~~~D 191 (283)
.-|..+|+.+|++.++.++..+...+++.+...++...+..+++..+...++++.+.+|+.+...+ .++..+|..+-
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s 215 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh
Confidence 347789999999999999999999999999999999999999999999999999999999987753 36777787775
Q ss_pred cCCCCccCHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHH
Q 023338 192 RDRSGKIDSNELREALMSLG--FAVSPVVLDLLVTKFDKTGG--KSKAIEYDNFIECCLT 247 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~--~~~~~~~i~~l~~~~d~~~d--~~g~i~~~eF~~~~~~ 247 (283)
.+ .+.++.++|.++|.... ...+.++++++++.+...+. ..+.|+++.|.+++..
T Consensus 216 ~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 216 HG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred CC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 55 88999999999999873 25677888889888754432 2366999999998774
No 76
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.42 E-value=3.8e-06 Score=57.36 Aligned_cols=66 Identities=14% Similarity=0.290 Sum_probs=54.3
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHh-c----CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSS-Y----NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~-~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
..|..+|..+..+ .++++..||+.+|.. + ...-+...++.|++.+|.++||.|+|.||+.++..+.
T Consensus 8 ~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 8 EKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4577889988854 569999999999965 2 3444678999999999999999999999999987653
No 77
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.36 E-value=6.2e-07 Score=47.72 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=23.2
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHhc
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSSY 144 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~~ 144 (283)
+++++|+.+|+|+||.|+.+||..+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 46788888888888888888888887653
No 78
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.31 E-value=8e-06 Score=70.36 Aligned_cols=123 Identities=13% Similarity=0.196 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHH-----hccCCCCccCHHHHHHHHHH------cCC------
Q 023338 150 LRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEK-----VDRDRSGKIDSNELREALMS------LGF------ 212 (283)
Q Consensus 150 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~-----~D~~~~G~i~~~el~~~l~~------l~~------ 212 (283)
..++.+-|+..|.+++|.|++..+..++.++..+..-|+. ...+.+|.+...+-.+.+.. .+.
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 4577788889999999999999999998765432222222 23344555544433222211 000
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH----------HHHHHhhhcCCCCCceeeeeHHHHHHH
Q 023338 213 AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK----------GLTEKFKERDTTYSGSATFTYENFMLA 276 (283)
Q Consensus 213 ~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~----------~~~~~f~~~d~~~~g~i~~~~~~~~~~ 276 (283)
-...+.++.+|+.+|+|+ +|.|+.+||+..+..+. .+.+.-+.+|-+++|.| ++.+|++.
T Consensus 543 Yr~ks~LetiF~~iD~D~--SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~I--DlNEfLeA 612 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADN--SGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKI--DLNEFLEA 612 (631)
T ss_pred HhchhhHHHHHHHhccCC--CCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcc--cHHHHHHH
Confidence 124566888999999998 59999999999988643 56667788899999988 55566543
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.29 E-value=1e-06 Score=47.93 Aligned_cols=30 Identities=47% Similarity=0.654 Sum_probs=25.8
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHH-HcC
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALM-SLG 211 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~-~l~ 211 (283)
+++.+|+.+|+|++|.|+.+||..+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 468899999999999999999999998 564
No 80
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.26 E-value=3.3e-06 Score=67.22 Aligned_cols=126 Identities=13% Similarity=0.154 Sum_probs=92.7
Q ss_pred HHHHHHccCCCCccCH---------HHHHHHHHh-cCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH----------
Q 023338 119 ACFQLADRDNSGLIDD---------KELQGALSS-YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH---------- 178 (283)
Q Consensus 119 ~~F~~~d~d~~g~i~~---------~el~~~l~~-~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~---------- 178 (283)
+.|..-++++.+..+. .||..+|.- .....-...+++|+..+|.+++..++..||+....
T Consensus 194 qevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqd 273 (362)
T KOG4251|consen 194 QEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQD 273 (362)
T ss_pred HHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccc
Confidence 3455555555555444 676666642 22233356778899999999999999999998743
Q ss_pred ----h-HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 179 ----S-LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 179 ----~-~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
+ ....++.-+.+|.|.+|.++++||...+-.+.+.+.-.++..++...+.+++ .+++.++.++.-.
T Consensus 274 iddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~--~~Ls~eell~r~~ 344 (362)
T KOG4251|consen 274 IDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANND--EKLSLEELLERDW 344 (362)
T ss_pred hHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCC--cccCHHHHHHHHh
Confidence 1 1344555566899999999999999998777777888889999999888885 7899999877533
No 81
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.26 E-value=4.8e-06 Score=58.91 Aligned_cols=67 Identities=16% Similarity=0.190 Sum_probs=57.3
Q ss_pred CCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 111 PGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 111 ~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
+...+.++++|+..|. .+|.|+..+.+.+|... .++.+.+..|+...|.+++|.++++||+.+++.+
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S--~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKS--GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHT--TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHc--CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4455679999998885 58999999999999855 6778999999999999999999999999998754
No 82
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.24 E-value=1.6e-06 Score=47.11 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=26.2
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHH-hcC
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALS-SYN 145 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~-~~~ 145 (283)
+|+++|+.+|+|++|.|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999998 564
No 83
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=5.8e-05 Score=69.32 Aligned_cols=64 Identities=27% Similarity=0.413 Sum_probs=55.5
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
..+.+|+.+|+..+|.|+-..-+.+|...+ +....+..|+...|.|+| |+|+.+||+..+..+.
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~D--GkL~~dEfilam~lie 259 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGD--GKLSADEFILAMHLIE 259 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCC--CcccHHHHHHHHHHHH
Confidence 457799999999999999999999987654 567788889999999996 9999999999888765
No 84
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.13 E-value=2.2e-05 Score=55.54 Aligned_cols=67 Identities=21% Similarity=0.378 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
.....+|+.+|. ++|.|+.++.+.+|...+ +..+.+..|+..+|.++| |.|+++||+-.++.+.+..
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~d--G~L~~~EF~iAm~Li~~~~ 76 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDND--GKLDFEEFAIAMHLINRKL 76 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSS--SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCC--CcCCHHHHHHHHHHHHHHh
Confidence 456788999885 689999999999998765 778999999999999996 9999999999988875443
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.13 E-value=1e-05 Score=48.49 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
+++.+|++.+|+.++..+++.-+..||..+|.+++|.|+.+||+.+++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 36788999999999988889989999999998888999998888887643
No 86
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.12 E-value=2.1e-05 Score=68.96 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=46.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
..++.+|+.+|.|++|.|+.+||.. ++.+|..+|.|+| |.|+++||...+...-
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~D--G~Is~eEf~~~~~~~~ 387 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHD--GKITPEEMRAGLGAAL 387 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCC--CCCcHHHHHHHHHHHH
Confidence 5678899999999999999999842 5789999999986 9999999999877543
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.12 E-value=1.3e-05 Score=48.04 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=39.6
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
++.+|++.+|+.+...+++.-+..+|+.+|.+++ |.|..+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~--g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQS--GRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSS--SEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCC--CCccHHHHHHHHHHh
Confidence 6789999999999999999999999999999885 999999999987754
No 88
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.08 E-value=5.5e-06 Score=68.62 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHH-------hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHH
Q 023338 151 RTVRLLMYTFTNTNARKIGPKEFIQVFH-------SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLV 223 (283)
Q Consensus 151 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~-------~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~ 223 (283)
..+..+|..||.+.+|.+++.|.+..+. ....+.-+|+.|+.+.||.+...+|..+|.... .+..-.+-.++
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf 337 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLF 337 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-Ccceeeccccc
Confidence 5678889999999999999999887765 246788999999999999999999999988641 22233456678
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhh
Q 023338 224 TKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFK 256 (283)
Q Consensus 224 ~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~ 256 (283)
...+...+ ++|++++|.++......+..+|.
T Consensus 338 ~~i~q~d~--~ki~~~~f~~fa~~~p~~a~~~~ 368 (412)
T KOG4666|consen 338 PSIEQKDD--PKIYASNFRKFAATEPNLALSEL 368 (412)
T ss_pred hhhhcccC--cceeHHHHHHHHHhCchhhhhhh
Confidence 88877664 89999999999887666654443
No 89
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.00 E-value=7.5e-06 Score=41.91 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=19.6
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREAL 207 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l 207 (283)
|+.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4567888888888888888888754
No 90
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.94 E-value=9.7e-05 Score=66.36 Aligned_cols=159 Identities=17% Similarity=0.227 Sum_probs=105.1
Q ss_pred CCCchhHHHHHHHHccCCCCccCHHHHHHHHH-hcCccCCHHHHHHHHHHhcCC-----CCCccCHHHHHHHHH------
Q 023338 111 PGTDPNIVACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLMYTFTNT-----NARKIGPKEFIQVFH------ 178 (283)
Q Consensus 111 ~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~-~~~~~~~~~~~~~l~~~~d~~-----~~g~i~~~ef~~~~~------ 178 (283)
+.....|.++|+..|.|.|+.++..||..+-+ .++..+...++..+...++.. .+..+++.-|+.+..
T Consensus 191 p~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfierg 270 (625)
T KOG1707|consen 191 PRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERG 270 (625)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhc
Confidence 34456799999999999999999999988764 477888888777777665422 234566666665432
Q ss_pred ------------------------------------------hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCC-C
Q 023338 179 ------------------------------------------SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAV-S 215 (283)
Q Consensus 179 ------------------------------------------~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~-~ 215 (283)
-.+.+..+|..||.|+||.++-.||..++....... .
T Consensus 271 r~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~ 350 (625)
T KOG1707|consen 271 RHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWT 350 (625)
T ss_pred cccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCC
Confidence 024678899999999999999999999999874432 1
Q ss_pred H-HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH-----HHHH--HhhhcCCC---CCceeeeeHHHHHH
Q 023338 216 P-VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK-----GLTE--KFKERDTT---YSGSATFTYENFML 275 (283)
Q Consensus 216 ~-~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~-----~~~~--~f~~~d~~---~~g~i~~~~~~~~~ 275 (283)
. -+.+..... + .|.+++..|+..|..+. +..+ .|--|..+ ....++++.+.-+.
T Consensus 351 ~~~~~~~t~~~---~---~G~ltl~g~l~~WsL~Tlld~~~t~~~L~Ylgf~~~~~~~~~ai~vtRkr~~d 415 (625)
T KOG1707|consen 351 SSPYKDSTVKN---E---RGWLTLNGFLSQWSLMTLLDPRRTLEYLAYLGFPTDAGSQASAIRVTRKRKLD 415 (625)
T ss_pred CCcccccceec---c---cceeehhhHHHHHHHHhhccHHHHHHHHHhcCCcccccccccceehhhhhhhh
Confidence 0 001100111 2 38899999998877532 1111 23344444 45566666665443
No 91
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.92 E-value=3.4e-05 Score=67.62 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 145 NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 145 ~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
+...-...+..+|+.+|.+++|.|+.+||+. +..+|+.+|.|++|.|+.+||..+++..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4555677889999999999999999999953 4678999999999999999999998753
No 92
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.91 E-value=1.5e-05 Score=40.73 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=20.4
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGAL 141 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l 141 (283)
|+++|+.+|+|++|.|+.+||++++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678888888888888888888753
No 93
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.89 E-value=8.8e-05 Score=72.57 Aligned_cols=79 Identities=16% Similarity=0.480 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCC--CHH-----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHH----
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAV--SPV-----VLDLLVTKFDKTGGKSKAIEYDNFIECCLTV---- 248 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~--~~~-----~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~---- 248 (283)
++++..+|+.||++++|+++..+|+..|+++|+++ -++ ++++++..+|-+.+ |.|+..+|+.++.+-
T Consensus 2252 L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~--G~Vsl~dY~afmi~~ETeN 2329 (2399)
T KOG0040|consen 2252 LKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRD--GYVSLQDYMAFMISKETEN 2329 (2399)
T ss_pred HHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCc--CcccHHHHHHHHHhccccc
Confidence 45778899999999999999999999999999876 233 68899999999886 999999999998852
Q ss_pred ----HHHHHHhhhcCC
Q 023338 249 ----KGLTEKFKERDT 260 (283)
Q Consensus 249 ----~~~~~~f~~~d~ 260 (283)
..+..+|+.++.
T Consensus 2330 I~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2330 ILSSEEIEDAFRALDA 2345 (2399)
T ss_pred ccchHHHHHHHHHhhc
Confidence 367788888877
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.85 E-value=1.6e-05 Score=57.28 Aligned_cols=61 Identities=20% Similarity=0.291 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
...+...|..+|.|+||.|+..||+.+...+ ...+..++.+++.+|.|+| +.|++.|+..+
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d--~~Is~~EW~~C 113 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKD--GKISLDEWCNC 113 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-S--SSEEHHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCC--CCCCHHHHccC
Confidence 4567778999999999999999999887655 3456678999999999986 89999999764
No 95
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.71 E-value=0.00023 Score=52.29 Aligned_cols=92 Identities=14% Similarity=0.229 Sum_probs=68.0
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCC-HHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH-----------HHHH
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFS-LRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ-----------NWRA 185 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~-~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~-----------~~~~ 185 (283)
+++...|..|+.|.++.++|.+++..+.-... .-.+.-.++.+|-++++.|.-+++..++..+. .+..
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 45667888999999999999998876642221 11223344567888888888888887776531 2455
Q ss_pred HHHHhccCCCCccCHHHHHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
+.+..|.|++|.|+..||+.++..
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHh
Confidence 677789999999999999998764
No 96
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=97.56 E-value=0.00027 Score=58.89 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=79.0
Q ss_pred CCccCHHHHHHHHH--hHHHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhCCCCCCcccHHHH
Q 023338 165 ARKIGPKEFIQVFH--SLQNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNF 241 (283)
Q Consensus 165 ~g~i~~~ef~~~~~--~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF 241 (283)
.+.|...||...++ ....+...|..||.+.+|.++..|-...|.-+ +-..+.+.|+..++.|+.+.| |.+.-++|
T Consensus 241 g~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eD--g~~ge~~l 318 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAED--GISGEHIL 318 (412)
T ss_pred CCCcceeEeeeeeecchhhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccc--cccchHHH
Confidence 34455555543332 12567889999999999999998866666554 556789999999999999997 78888777
Q ss_pred HHHHHHHH-----HHHHHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 242 IECCLTVK-----GLTEKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 242 ~~~~~~~~-----~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
..++...- ++...|+..+...++.| ++++|-+++.
T Consensus 319 s~ilq~~lgv~~l~v~~lf~~i~q~d~~ki--~~~~f~~fa~ 358 (412)
T KOG4666|consen 319 SLILQVVLGVEVLRVPVLFPSIEQKDDPKI--YASNFRKFAA 358 (412)
T ss_pred HHHHHHhcCcceeeccccchhhhcccCcce--eHHHHHHHHH
Confidence 77666422 44567888888778877 6666666554
No 97
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.47 E-value=0.00038 Score=61.54 Aligned_cols=67 Identities=19% Similarity=0.389 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCC---CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFA---VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~---~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
+..+++.|...| |++|+|+..|+..+++..+.. ...+++++++...+.|.+ |+|+||+|+..+..++
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~--g~v~fe~f~~~~~~l~ 87 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDAD--GRVEFEEFVGIFLNLK 87 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcC--CccCHHHHHHHHHhhh
Confidence 456788999999 999999999999999987553 358899999999998885 8999999999777654
No 98
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.47 E-value=0.0037 Score=58.06 Aligned_cols=125 Identities=10% Similarity=0.202 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH------HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Q 023338 149 SLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL------QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLL 222 (283)
Q Consensus 149 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l 222 (283)
.+.++..++...|++.+|.+++.+-..++..+ ..++.+|+..|...++.+..++++++...+.... ++..+
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~ 210 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFL 210 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHH
Confidence 45678889999999999999999998887643 4678888888999999999999999988876544 77778
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHH--------HHHHHhhhcCCCC--CceeeeeHHHHHHHhcc
Q 023338 223 VTKFDKTGGKSKAIEYDNFIECCLTVK--------GLTEKFKERDTTY--SGSATFTYENFMLAVLP 279 (283)
Q Consensus 223 ~~~~d~~~d~~g~i~~~eF~~~~~~~~--------~~~~~f~~~d~~~--~g~i~~~~~~~~~~~~~ 279 (283)
+..+..+. +.++.+++++++.... ...++.+.+.... ...--++++.|+..+++
T Consensus 211 f~~~s~~~---~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 211 FVQYSHGK---EYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred HHHHhCCC---CccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 77776654 5788888888877542 2233333332211 12223788888887765
No 99
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.42 E-value=6.8e-05 Score=54.06 Aligned_cols=58 Identities=19% Similarity=0.227 Sum_probs=34.7
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh----HHHHHHHHHHhccCCCCccCHHHHH
Q 023338 147 SFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS----LQNWRAMFEKVDRDRSGKIDSNELR 204 (283)
Q Consensus 147 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~----~~~~~~~f~~~D~~~~G~i~~~el~ 204 (283)
..-...+.=.|..+|.+.+|.|+-.|+..+... ...++..|+..|.|+|+.|+..|+.
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 334556666677777777777777777666542 2356667777788888888777764
No 100
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.26 E-value=0.00057 Score=60.51 Aligned_cols=67 Identities=18% Similarity=0.275 Sum_probs=56.6
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCcc---CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS---FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~---~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
...++++.|...| |.+|.|+..||..++...+.. ...++++.++...+.+.+|+|+|+||+..+..+
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3355778899999 999999999999999886533 357899999999999999999999999977643
No 101
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.05 E-value=0.16 Score=43.14 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHh
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSS 143 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~ 143 (283)
..+.++++++++ +-.|+...+.+++..
T Consensus 357 lSeAEFEdiM~R-----NraiSSSAIsrAvsd 383 (498)
T KOG4849|consen 357 LSEAEFEDIMTR-----NRAISSSAISRAVSD 383 (498)
T ss_pred chHHHHHHHHhh-----cchhhHHHHHHHhcc
Confidence 445566666653 455666666555543
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.89 E-value=0.0049 Score=41.77 Aligned_cols=65 Identities=15% Similarity=0.262 Sum_probs=50.2
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHc-CC-CCCHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSL-GF-AVSPVVLDLLVTKFDKTGG--KSKAIEYDNFIECCLT 247 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~-~~~~~~i~~l~~~~d~~~d--~~g~i~~~eF~~~~~~ 247 (283)
++..+|+.+-. +.+.|+.++|.+.|... +. .++.+.++.++..+..+.. ..+.|++++|..++..
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46788999955 78899999999999865 33 4688999999999865420 1378999999999763
No 103
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.87 E-value=0.0017 Score=33.45 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=21.0
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHh
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSS 143 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~ 143 (283)
+++++|+.+|.+++|.|+..||..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3567788888888888888888777754
No 104
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.84 E-value=0.0016 Score=33.56 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=19.0
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
++.+|+.+|.+++|.|+.+||..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456677777777777777777777654
No 105
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=96.80 E-value=0.086 Score=49.28 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 023338 237 EYDNFIECCLTVKGLTEK 254 (283)
Q Consensus 237 ~~~eF~~~~~~~~~~~~~ 254 (283)
.-++|+-.+..++++.+.
T Consensus 509 ~edkFml~lskIErle~k 526 (830)
T KOG1923|consen 509 EEDKFMLSLSKIERLEEK 526 (830)
T ss_pred cchhhhhhhhhhhhhHHH
Confidence 345577777666655543
No 106
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.80 E-value=0.0088 Score=57.02 Aligned_cols=91 Identities=15% Similarity=0.027 Sum_probs=71.1
Q ss_pred chhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCH-----HHHHHHHHHhcCCCCCccCHHHHHHHHHh-------HH
Q 023338 114 DPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSL-----RTVRLLMYTFTNTNARKIGPKEFIQVFHS-------LQ 181 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~-----~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------~~ 181 (283)
..+|+.+|+.+|+...+.++.++|..+|..+|.+... .++.+|++..|.+..|.++|.+|...+.. ..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 3678999999999999999999999999999987764 34455666667666788999999988764 24
Q ss_pred HHHHHHHHhccCCCCccCHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELRE 205 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~ 205 (283)
.+..+|+.+-+++. .|..+||.+
T Consensus 826 r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchh-HHHHHHHHh
Confidence 56777888776666 666666666
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=96.71 E-value=0.01 Score=45.39 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=75.5
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcC---CCCCccCHHHH---HHHHH-----------
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTN---TNARKIGPKEF---IQVFH----------- 178 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~---~~~g~i~~~ef---~~~~~----------- 178 (283)
.|.+-...||+|+||.|...|--..++++|+++-...+..++-...- ...+.+----| +..+.
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~Y 87 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAY 87 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcccc
Confidence 45555667999999999999999999999988765554333322110 00010000000 00000
Q ss_pred ------hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCC-----CCCHHHHHHHH-HHHhhCCCCCCcccHHHHHHH
Q 023338 179 ------SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGF-----AVSPVVLDLLV-TKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 179 ------~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~-----~~~~~~i~~l~-~~~d~~~d~~g~i~~~eF~~~ 244 (283)
.-+++.++|.++++...+.|+..|+.++++.--. ......++... -.+-.++ +|.|..|..+.+
T Consensus 88 D~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~--dG~l~Ke~iR~v 163 (174)
T PF05042_consen 88 DTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDK--DGFLSKEDIRGV 163 (174)
T ss_pred ccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCc--CCcEeHHHHhhh
Confidence 1257889999999988889999999999986211 11223333222 2223344 378887776654
No 108
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.0066 Score=42.82 Aligned_cols=57 Identities=28% Similarity=0.434 Sum_probs=37.9
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHc------CC----CCCHHHHHHHHHHH----hhCCCCCCcccHHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSL------GF----AVSPVVLDLLVTKF----DKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l------~~----~~~~~~i~~l~~~~----d~~~d~~g~i~~~eF~~~ 244 (283)
-|++.|.|+++.|+--||..++... |. -.++.+++.|+..+ |.++ +|.|+|-||++.
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~--DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNG--DGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCC--CceeeHHHHHhh
Confidence 4677788888888877777776643 11 13566666666654 4444 488999998765
No 109
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.58 E-value=0.0065 Score=51.23 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=29.4
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
+-.+|..+|.|.++.|+..||+.|-. .-.+..|+.+|..+|...| |.|+-.|++.++.
T Consensus 252 ~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kD--g~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 252 LGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKD--GSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhccccc--Cccccchhhhhhc
Confidence 44455555555555555555555432 1233445555555555553 5555555555444
No 110
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.37 E-value=0.011 Score=39.98 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=44.9
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHhc-Cc-cCCHHHHHHHHHHhcCC----CCCccCHHHHHHHHH
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSSY-NQ-SFSLRTVRLLMYTFTNT----NARKIGPKEFIQVFH 178 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~~-~~-~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~~~ 178 (283)
+|+.+|+.+.. ....|+.++|+++|+.- +. ..+.+.++.|+..+..+ ..+.|+++.|..++.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 47889999966 68899999999999753 32 45788888888776432 246677777766654
No 111
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.0075 Score=56.02 Aligned_cols=68 Identities=18% Similarity=0.269 Sum_probs=59.2
Q ss_pred CCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 110 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
+..+..+++++|+.+|+..+|.++-..-+.+|... .+....+..|+..-|.|+||.|+.+||+..+..
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQS--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhc--CCchhhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 34455789999999999999999999999988755 566888999999999999999999999988764
No 112
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.018 Score=40.73 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=37.6
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHhcCc----------cCCHHHHHHHHH----HhcCCCCCccCHHHHHH
Q 023338 119 ACFQLADRDNSGLIDDKELQGALSSYNQ----------SFSLRTVRLLMY----TFTNTNARKIGPKEFIQ 175 (283)
Q Consensus 119 ~~F~~~d~d~~g~i~~~el~~~l~~~~~----------~~~~~~~~~l~~----~~d~~~~g~i~~~ef~~ 175 (283)
..|+.+|-|+++.|+--||.+++.-.-. -.++.++.+|+. ..|.+++|.|++.||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 3688999999999999999988865321 123444444433 33556667777777654
No 113
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=96.16 E-value=0.025 Score=55.85 Aligned_cols=59 Identities=17% Similarity=0.366 Sum_probs=50.4
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 185 AMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 185 ~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
+-|+.+|.|+.|.|+..+|...+..- ...+..+++-++.....|+ +..++|++|+..++
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~de--nd~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADE--NDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCc--cccccHHHHHHHhc
Confidence 46999999999999999999998753 3458899999999998887 47899999998765
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.07 E-value=0.02 Score=48.39 Aligned_cols=97 Identities=13% Similarity=0.184 Sum_probs=77.7
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCc---cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH--hHHHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQ---SFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH--SLQNWRAMFEK 189 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~--~~~~~~~~f~~ 189 (283)
.+|+++|+.+-.|.++......+..+-..+.. ..-+..+.=||+.+|.+.++.|+..|+..+.. +...++.+|+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 45788899888888777777777666554433 23456788899999999999999999988765 45678999999
Q ss_pred hccCCCCccCHHHHHHHHHHcC
Q 023338 190 VDRDRSGKIDSNELREALMSLG 211 (283)
Q Consensus 190 ~D~~~~G~i~~~el~~~l~~l~ 211 (283)
.|..++|.|+.+|+-..+....
T Consensus 291 CD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred hcccccCccccchhhhhhccCC
Confidence 9999999999999988887654
No 115
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.80 E-value=0.067 Score=40.88 Aligned_cols=84 Identities=24% Similarity=0.409 Sum_probs=56.9
Q ss_pred HHHHHHHH---ccCCCCccCHHHHHHHHHhc---CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHh
Q 023338 117 IVACFQLA---DRDNSGLIDDKELQGALSSY---NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKV 190 (283)
Q Consensus 117 l~~~F~~~---d~d~~g~i~~~el~~~l~~~---~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~ 190 (283)
|+++|..| .+.....++...|.++++.. ...++...++.||..+.......|+|++|+.++..+. ...
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA------~~~ 74 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA------EKK 74 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH------HHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH------HHh
Confidence 45566655 45667789999999999874 3457899999999998777777799999988876432 222
Q ss_pred ccCCCCccCHHHHHHHHHH
Q 023338 191 DRDRSGKIDSNELREALMS 209 (283)
Q Consensus 191 D~~~~G~i~~~el~~~l~~ 209 (283)
..+.+ +.+++...|..
T Consensus 75 ~~~~~---~~~~~~~kl~~ 90 (154)
T PF05517_consen 75 GKDKS---SAEELKEKLTA 90 (154)
T ss_dssp SCCCT---HHHHHHHHHHT
T ss_pred hcccc---cHHHHHHHHHc
Confidence 22222 66666766643
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.66 E-value=0.01 Score=57.62 Aligned_cols=128 Identities=19% Similarity=0.266 Sum_probs=92.3
Q ss_pred chhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh--------------
Q 023338 114 DPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-------------- 179 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------------- 179 (283)
..++..+|..+... +|.++-...+.+|..- .+....+.+++...|.+.+|.+++.||...++.
T Consensus 128 ~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~~~p~P~ 204 (847)
T KOG0998|consen 128 QAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGNSEPVPS 204 (847)
T ss_pred HHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcccCCCCc
Confidence 34566666666655 6677776666666533 455667777777778777888888888766541
Q ss_pred -----------------------------------------------------------------------------HHH
Q 023338 180 -----------------------------------------------------------------------------LQN 182 (283)
Q Consensus 180 -----------------------------------------------------------------------------~~~ 182 (283)
...
T Consensus 205 ~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vsp~d~~~ 284 (847)
T KOG0998|consen 205 RLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVSPSDKQK 284 (847)
T ss_pred cCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccChHHHHH
Confidence 113
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+.++|...|++.+|.|+..+...++.. ..+....+..++...+...+ +.|++++|+-.+..+
T Consensus 285 ~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~--~~ls~~ef~~~~~~~ 346 (847)
T KOG0998|consen 285 YSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNT--GTLSKDEFALAMHLL 346 (847)
T ss_pred HHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhcc--Ccccccccchhhhhh
Confidence 455788889999999999998888877 45677888888888888775 889998887776654
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=95.63 E-value=0.1 Score=48.43 Aligned_cols=81 Identities=15% Similarity=0.178 Sum_probs=54.6
Q ss_pred CCccCHHHHHHHHHhH--------HHHHHHHHHhccCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhCC----
Q 023338 165 ARKIGPKEFIQVFHSL--------QNWRAMFEKVDRDRSGKIDSNELREALMSLGF--AVSPVVLDLLVTKFDKTG---- 230 (283)
Q Consensus 165 ~g~i~~~ef~~~~~~~--------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~--~~~~~~i~~l~~~~d~~~---- 230 (283)
.|.++|++|..+.+.+ .+++.+|..+-.++ +.|+.++|.++|...-. ..+.++++.|+..+-...
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 4678888887766644 47888888885433 57999999999887532 355666666665442111
Q ss_pred -CCCCcccHHHHHHHHH
Q 023338 231 -GKSKAIEYDNFIECCL 246 (283)
Q Consensus 231 -d~~g~i~~~eF~~~~~ 246 (283)
.....++++.|..++.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 0124589999999876
No 118
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=95.58 E-value=0.23 Score=47.39 Aligned_cols=120 Identities=13% Similarity=0.218 Sum_probs=79.1
Q ss_pred ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHh--cCCCCCc-----cCHHHHHHHHHhH---HHHHHHHHHhccCC
Q 023338 125 DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTF--TNTNARK-----IGPKEFIQVFHSL---QNWRAMFEKVDRDR 194 (283)
Q Consensus 125 d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~--d~~~~g~-----i~~~ef~~~~~~~---~~~~~~f~~~D~~~ 194 (283)
-.|..++|-++.+.+.+.+- -.+..+...+..+ -.+++.+ .+++.|..++.++ .++.++|+.+..++
T Consensus 158 qvn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~ 234 (1189)
T KOG1265|consen 158 QVNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKK 234 (1189)
T ss_pred cccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCC
Confidence 34556777766665555432 1123333333332 2233333 4555566666553 68999999999999
Q ss_pred CCccCHHHHHHHHHHc----------CCCCCHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHHH
Q 023338 195 SGKIDSNELREALMSL----------GFAVSPVVLDLLVTKFDKTGG--KSKAIEYDNFIECCLT 247 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l----------~~~~~~~~i~~l~~~~d~~~d--~~g~i~~~eF~~~~~~ 247 (283)
.-+++.++|..+|..- --.++...+..|+..+.-+.+ ..|.|+-+.|+++++.
T Consensus 235 kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 235 KPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8999999999999752 113467778899999866653 3589999999998774
No 119
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.52 E-value=1.3 Score=37.66 Aligned_cols=44 Identities=9% Similarity=0.172 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 202 ELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 202 el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
+.+++|.... .+..|++.+..+++.-. +|.|++++|++-++.+.
T Consensus 301 l~kq~l~~~A---~d~aieD~i~~L~~~~r-~G~i~l~~yLr~VR~ls 344 (365)
T KOG2391|consen 301 LYKQILECYA---LDLAIEDAIYSLGKSLR-DGVIDLDQYLRHVRLLS 344 (365)
T ss_pred HHHHHHHhhh---hhhHHHHHHHHHHHHHh-cCeeeHHHHHHHHHHHH
Confidence 4555665543 34446666666655221 38999999998877653
No 120
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.42 E-value=0.023 Score=50.36 Aligned_cols=65 Identities=14% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
.+++-+..-|+.+-.|-+|.|+-..-+.++... .+.-.++..||...|.++||.|++.||+.+++
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHh
Confidence 334446667888888999999988888888754 66788999999999999999999999999886
No 121
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=95.37 E-value=0.1 Score=39.88 Aligned_cols=60 Identities=17% Similarity=0.448 Sum_probs=44.0
Q ss_pred HHHhccCCCCccCHHHHHHHHHHcCC---CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 187 FEKVDRDRSGKIDSNELREALMSLGF---AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 187 f~~~D~~~~G~i~~~el~~~l~~l~~---~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
|-.|-......++...|..+++..++ .++..+++.+|..+.... ..+|+|++|+.+|..+
T Consensus 8 f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~--~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 8 FASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKG--ARKITFEQFLEALAEL 70 (154)
T ss_dssp HHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS---SEEEHHHHHHHHHHH
T ss_pred HHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCC--CcccCHHHHHHHHHHH
Confidence 33334556678888899999988644 578899999999986655 3579999999987754
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=95.15 E-value=0.084 Score=44.10 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=41.6
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHH----cCC-CCCHHHH-----------HHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMS----LGF-AVSPVVL-----------DLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~----l~~-~~~~~~i-----------~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
+..|.+.|.|++|.++..||+.++.. +-. .-.++++ +.+++.+|.+.| ..|+.+||+...
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqD--RlvtleEFL~~t 322 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQD--RLVTLEEFLNDT 322 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchh--hhhhHHHHHhhh
Confidence 55789999999999999999998764 111 1111111 234566777775 789999998763
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.81 E-value=0.19 Score=46.37 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcC-ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHH
Q 023338 134 DKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNEL 203 (283)
Q Consensus 134 ~~el~~~l~~~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el 203 (283)
...+..+++.+. +..+...+.++|..+|.+.+|.|+|.+|+..+.. ++.++.+|+.+|.+.+ .++.+|+
T Consensus 537 ~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 537 YAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 333444444321 2345566788888999999999999999988764 4678889999999988 8888887
No 124
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=0.21 Score=42.30 Aligned_cols=104 Identities=13% Similarity=0.172 Sum_probs=59.2
Q ss_pred CCCCCCc-hhHHHHHHHHccCCCCccCHHHHH------HHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-
Q 023338 108 TFPPGTD-PNIVACFQLADRDNSGLIDDKELQ------GALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS- 179 (283)
Q Consensus 108 ~~~~~~~-~~l~~~F~~~d~d~~g~i~~~el~------~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~- 179 (283)
.|.+..+ +.|+++|+.+++|.+-.|++--=+ .+...+-..+. ++|++.++..-+| +|++.+..|..
T Consensus 15 ~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~yg----kDLi~~Lk~ELsG--~Fe~~i~al~~~ 88 (321)
T KOG0819|consen 15 VFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYG----KDLIKDLKSELSG--DFERAIVALMKP 88 (321)
T ss_pred CCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHh----HHHHHHHHHHhCc--cHHHHHHHHcCC
Confidence 3334443 559999999999987777653211 11122222233 4455555544455 48888888764
Q ss_pred -----HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 180 -----LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 180 -----~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
...++.+.+.+.+|.+-.| ++|+ ..++.++..+.+.+.
T Consensus 89 p~~~DA~~l~~amkg~gtde~vlI------EIlc----TRT~~el~~i~~aY~ 131 (321)
T KOG0819|consen 89 PAEYDAKELKKAMKGLGTDEKVLI------EILC----TRTNEELRAIRQAYQ 131 (321)
T ss_pred HHHhHHHHHHHHHhccCcchhhhe------eeec----cCCHHHHHHHHHHHH
Confidence 3567777777777754322 3332 356666666655543
No 125
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.55 E-value=0.071 Score=47.36 Aligned_cols=64 Identities=16% Similarity=0.158 Sum_probs=54.7
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+.....|+.+..|-+|.|+-.--++++.... +.-.|+..|++..|.|.| |.|++.|||..++.+
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~D--GALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRD--GALTLSEFCAAFHLV 294 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCcc--ccccHHHHHhhHhhe
Confidence 4456789999999999999999999888644 556889999999999996 999999999998864
No 126
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=0.11 Score=50.60 Aligned_cols=132 Identities=14% Similarity=0.217 Sum_probs=101.9
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH--------------
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL-------------- 180 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-------------- 180 (283)
..+..+|+.+|...+|.|+..+-..++... .+....+-.++...|..+.|.++..+|..+++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s--~L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~aq~~~~~~~~~~ 88 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKS--GLPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQAQSGRELSAKKV 88 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhcc--ccchhhhhccccccccccCCccccccccccchHhhhhhcccCcCcccc
Confidence 578889999999999999999988888754 5668888889999998888999999998876511
Q ss_pred ----------------------------------------HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHH
Q 023338 181 ----------------------------------------QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLD 220 (283)
Q Consensus 181 ----------------------------------------~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~ 220 (283)
.....+|+.+... +|.++.+..+-+|..- .+..+.+-
T Consensus 89 ~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~s--~Lp~~~l~ 165 (847)
T KOG0998|consen 89 LPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLNS--KLPSDVLG 165 (847)
T ss_pred ccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhcC--CCChhhhc
Confidence 1233446666555 7788888777777653 35556677
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHH
Q 023338 221 LLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTE 253 (283)
Q Consensus 221 ~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~ 253 (283)
.++...|.+.+ |.|+..||.-.++.+..+..
T Consensus 166 ~iw~l~d~d~~--g~Ld~~ef~~am~l~~~~l~ 196 (847)
T KOG0998|consen 166 RIWELSDIDKD--GNLDRDEFAVAMHLINDLLN 196 (847)
T ss_pred ccccccccccc--CCCChhhhhhhhhHHHHHhh
Confidence 88888888885 99999999998887655544
No 127
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.01 E-value=0.21 Score=38.35 Aligned_cols=69 Identities=14% Similarity=0.295 Sum_probs=43.3
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCC
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDR 194 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~ 194 (283)
+++.++|.++++...+.++..|+..+++...... ++.-++...-+|..+|.+. +++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~-----------------------D~~GW~a~~~EW~~~y~L~-~d~ 151 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAN-----------------------DPFGWFAAFFEWGALYILA-KDK 151 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccC-----------------------CcchhhhhhhHHHHHHHHH-cCc
Confidence 6788888888887777888888887776532211 1111222223444555554 566
Q ss_pred CCccCHHHHHHHH
Q 023338 195 SGKIDSNELREAL 207 (283)
Q Consensus 195 ~G~i~~~el~~~l 207 (283)
+|.|..++++.+.
T Consensus 152 dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 152 DGFLSKEDIRGVY 164 (174)
T ss_pred CCcEeHHHHhhhc
Confidence 7888888888775
No 128
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=93.96 E-value=0.034 Score=46.70 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHh-------HHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 152 TVRLLMYTFTNTNARKIGPKEFIQVFHS-------LQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 152 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~-------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
.+.--|..+|.+.++.|+-.|+.-+-.. .+..+.+|+..|.|+|..|+++|++..|...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 5566677888888888877776554332 2456778888899999999999999888643
No 129
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=93.93 E-value=0.24 Score=43.31 Aligned_cols=31 Identities=10% Similarity=0.164 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 147 SFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 147 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
.++.+.++.|.+.+|.|.+|.|+.+|=-.++
T Consensus 64 klg~EAir~iHrqmDDD~nG~Id~~ESdeFl 94 (575)
T KOG4403|consen 64 KLGYEAIRDIHRQMDDDHNGSIDVEESDEFL 94 (575)
T ss_pred hhhHHHHHHHHHhcccccCCCcccccchHHH
Confidence 3444555555555555555555555443333
No 130
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=93.58 E-value=0.097 Score=47.47 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=56.6
Q ss_pred CCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 110 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
.+......+..|..+|.|+.+.+++.++.++|+..+...+++.+++++...|.+..|.+.+.||..++..
T Consensus 588 ~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 588 TPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred CHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 3344455667788899999999999999999998888888999999998888887888888887666543
No 131
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.58 E-value=0.59 Score=42.88 Aligned_cols=67 Identities=15% Similarity=0.281 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHHHhh---CCCCCCcccHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMS-LGFAVSPVVLDLLVTKFDK---TGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-l~~~~~~~~i~~l~~~~d~---~~d~~g~i~~~eF~~~~~ 246 (283)
.+.|.++|+..|.|.+|.++-.|+..+-+. ++..++..+++.+....+. ++-.+..++...|+.+..
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 357899999999999999999999887665 4666776666655554432 221124566666665543
No 132
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.00 E-value=0.92 Score=31.08 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=34.2
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhc-------C----ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSY-------N----QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~-------~----~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
+++|-+|+.+ .|.+|.++...|..+|+.+ + +...+..++..|.... .+..|+.++|+.++.
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHH
Confidence 5789999988 7779999999999888753 1 1113344444444431 233466666666655
No 133
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=93.00 E-value=0.83 Score=31.29 Aligned_cols=63 Identities=17% Similarity=0.289 Sum_probs=36.3
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHH-------cCCC----CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMS-------LGFA----VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~-------l~~~----~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
++++.+|+.+ .|.+|.++...|..+|.. +++. -.+..++..|..... +..|+.++|+.+++..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~----~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQL----SPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-----S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCC----CCccCHHHHHHHHHhC
Confidence 4667788888 777888998888887765 2322 244445555555421 2469999999988753
No 134
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.99 E-value=3 Score=35.75 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=14.7
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRL 155 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~ 155 (283)
.++..||++++.... .++-..|.+
T Consensus 356 plSeAEFEdiM~RNr-aiSSSAIsr 379 (498)
T KOG4849|consen 356 PLSEAEFEDIMTRNR-AISSSAISR 379 (498)
T ss_pred cchHHHHHHHHhhcc-hhhHHHHHH
Confidence 378889999887543 333444443
No 135
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.70 E-value=0.25 Score=41.85 Aligned_cols=147 Identities=17% Similarity=0.144 Sum_probs=70.2
Q ss_pred CCCCCCchhHHHHHH-HHccCCCCccCH---HHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH--hHH
Q 023338 108 TFPPGTDPNIVACFQ-LADRDNSGLIDD---KELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH--SLQ 181 (283)
Q Consensus 108 ~~~~~~~~~l~~~F~-~~d~d~~g~i~~---~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~--~~~ 181 (283)
.-...+++.|++.|+ .+.+|--..+.. ..|.+++..+.....+-+++.|.+.+..-++..-.+-|.+.... .+.
T Consensus 45 ~Rsn~QRq~I~~ayk~~ygkDLi~~Lk~ELsG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~ 124 (321)
T KOG0819|consen 45 HRSNAQRQLIRAAYKTMYGKDLIKDLKSELSGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELR 124 (321)
T ss_pred ccCHHHHHHHHHHHHHHHhHHHHHHHHHHhCccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHH
Confidence 334556778999998 455553222221 13555555555555566666666666544333222222221111 244
Q ss_pred HHHHHHHH-hccCCCCccCH---HHHHHHHHHc-------CCCCCH----HHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 182 NWRAMFEK-VDRDRSGKIDS---NELREALMSL-------GFAVSP----VVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 182 ~~~~~f~~-~D~~~~G~i~~---~el~~~l~~l-------~~~~~~----~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.++.+|.. |+++-.-.|.. -.|+++|..| +..++. .++..|.+...... | .+.++|+..+.
T Consensus 125 ~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~---g-tde~~~~~Il~ 200 (321)
T KOG0819|consen 125 AIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKW---G-TDEDKFIRILT 200 (321)
T ss_pred HHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhc---c-CcHHHHHHHHH
Confidence 55555554 33321111111 1467777765 112232 33444444443322 2 56677888877
Q ss_pred H--HHHHHHHhhhc
Q 023338 247 T--VKGLTEKFKER 258 (283)
Q Consensus 247 ~--~~~~~~~f~~~ 258 (283)
. ...+..+|..|
T Consensus 201 tRs~~qL~~vf~~y 214 (321)
T KOG0819|consen 201 TRSKAQLRLVFEEY 214 (321)
T ss_pred hCCHHHHHHHHHHH
Confidence 4 33444444433
No 136
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=92.55 E-value=0.053 Score=35.11 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=36.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCC-----CCCcccHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGG-----KSKAIEYDNFIEC 244 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d-----~~g~i~~~eF~~~ 244 (283)
+.++.+|+.+ .+++..|+.+||++.|.. +.++-+++.+..-.+ ..+.++|+.|+..
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 5788999999 778899999999999753 223444443322221 1367888888653
No 137
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=92.25 E-value=0.24 Score=41.49 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCc
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGK 197 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~ 197 (283)
+..|..+|.|.+|.++.-||..++.. .|-+.+|..+. .-+..|...-. ++-...+.+.+|+|.+..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtk-----------ELEKvYdpkNe-eDDM~EmeEEr--lRMREHVMk~vDtNqDRl 312 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTK-----------ELEKVYDPKNE-EDDMKEMEEER--LRMREHVMKQVDTNQDRL 312 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHH-----------HHHHhcCCCCc-chHHHHHHHHH--HHHHHHHHHhcccchhhh
Confidence 34577778888888888888777642 22223332110 00111111111 111234566677777777
Q ss_pred cCHHHHHHHHHH
Q 023338 198 IDSNELREALMS 209 (283)
Q Consensus 198 i~~~el~~~l~~ 209 (283)
|+.+||-..-.+
T Consensus 313 vtleEFL~~t~~ 324 (442)
T KOG3866|consen 313 VTLEEFLNDTDN 324 (442)
T ss_pred hhHHHHHhhhhh
Confidence 777776555443
No 138
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=92.12 E-value=1.6 Score=29.39 Aligned_cols=51 Identities=18% Similarity=0.181 Sum_probs=38.6
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
-..||.+||.+..+..+..++.+.++.++..+..+.-.-.+-++-..++..
T Consensus 12 ln~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llke 62 (85)
T PF11116_consen 12 LNNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKE 62 (85)
T ss_pred HhcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 456899999999999999999999999998887665444555554444443
No 139
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.11 E-value=0.67 Score=44.76 Aligned_cols=82 Identities=22% Similarity=0.218 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHH--HHHH---HHHHHhhCCCCCCcccHHHHHHHHHHH------
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPV--VLDL---LVTKFDKTGGKSKAIEYDNFIECCLTV------ 248 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~--~i~~---l~~~~d~~~d~~g~i~~~eF~~~~~~~------ 248 (283)
+.+++..|+.+|+...+.++.+++.+.|..+|.+...+ .+.+ |+...+... .|.+++.+|...+..-
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~--~~qv~~~e~~ddl~R~~e~l~~ 823 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLI--QGQVQLLEFEDDLEREYEDLDT 823 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCccc--ccceeHHHHHhHhhhhhhhhcH
Confidence 46788889999999889999999999998888876642 2333 333333333 2678888888877642
Q ss_pred -HHHHHHhhhcCCCCC
Q 023338 249 -KGLTEKFKERDTTYS 263 (283)
Q Consensus 249 -~~~~~~f~~~d~~~~ 263 (283)
.++...|+..-++..
T Consensus 824 ~~r~i~s~~d~~ktk~ 839 (890)
T KOG0035|consen 824 ELRAILAFEDWAKTKA 839 (890)
T ss_pred HHHHHHHHHHHHcchh
Confidence 244455655544433
No 140
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=92.10 E-value=0.42 Score=43.56 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=57.7
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
..+.-|..+|.|+.+.+..+++.++|+..+...+++.++++++.++... +|.++.+||..++..++
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~--~g~v~l~e~~q~~s~~~ 659 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENL--NGFVELREFLQLMSAIK 659 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhh--cceeeHHHHHHHHHHHh
Confidence 4556788999999999999999999999888899999999999998876 48999999999887654
No 141
>PLN02952 phosphoinositide phospholipase C
Probab=91.91 E-value=0.85 Score=42.58 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=56.0
Q ss_pred CCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHH--------HHHHhhhc----C
Q 023338 194 RSGKIDSNELREALMSLGF--AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKG--------LTEKFKER----D 259 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~--~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~--------~~~~f~~~----d 259 (283)
+.|.++.+||..+.+.+.. .....+|+.++..+..++ +.|+.++|.+++...+. ..+++..+ .
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~---~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~ 89 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG---GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRH 89 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC---CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcc
Confidence 4689999999888776632 236789999999997654 57999999999986431 22222221 1
Q ss_pred -CCCCceeeeeHHHHHHHhcc
Q 023338 260 -TTYSGSATFTYENFMLAVLP 279 (283)
Q Consensus 260 -~~~~g~i~~~~~~~~~~~~~ 279 (283)
....+...++++.|+..+++
T Consensus 90 ~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 90 HVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccccCcCHHHHHHHHcC
Confidence 11112234788999988875
No 142
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=1.2 Score=31.37 Aligned_cols=54 Identities=11% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
..+|.+++.-++-..+..+++.||..+|...+++.|+.++..+. |+ +.+|.+..
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~------GK-~i~ElIA~ 57 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK------GK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc------CC-CHHHHHHH
Confidence 45677788888889999999999999999999999999999984 33 55666554
No 143
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=91.75 E-value=0.12 Score=43.64 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCCCCccCHHHHH---HHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELR---EALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~---~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
.++.-|..+|+|.++.|+..|++ ++|.... -.....+.+++.+|.++| .+|+++|++.++..
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkD--KkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKD--KKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCC--ceecHHHHhhhhcc
Confidence 34556999999999999999854 5554422 234667889999999997 78999999998663
No 144
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=91.34 E-value=0.54 Score=43.45 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=51.2
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEF 173 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef 173 (283)
.-++++|..+|.+.+|.|+..+|...|..+......+.++.+++..|...+ .++.+|.
T Consensus 555 ~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 457899999999999999999999999988777778899999999998887 7777776
No 145
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=91.15 E-value=3.8 Score=38.82 Aligned_cols=133 Identities=12% Similarity=0.070 Sum_probs=81.1
Q ss_pred CCchhHHHHHHHH-ccCCCC---ccCHHHHHHHHHhcCc-cCCHHHHHHHHHHhcCCCC-CccCHHHHHHHHHh------
Q 023338 112 GTDPNIVACFQLA-DRDNSG---LIDDKELQGALSSYNQ-SFSLRTVRLLMYTFTNTNA-RKIGPKEFIQVFHS------ 179 (283)
Q Consensus 112 ~~~~~l~~~F~~~-d~d~~g---~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~-g~i~~~ef~~~~~~------ 179 (283)
.....+-.+++.. |-|+-. .-+.-.|+.+-+.+.. .++...+.++|...+-... -.++..+.+.++..
T Consensus 376 wdhp~~tel~q~lad~nnvKfsaYRtAmKlr~LQK~l~ldlv~ltl~l~if~~h~l~~~~e~m~~~~~i~~L~~~y~~l~ 455 (966)
T KOG4286|consen 376 WDHPKMTELYQSLADLNNVKFSAYRTAMKLRRLQKALCLDLLSLSLALDALDQHNLKQNDQPMDILQIINCLTTIYDRLE 455 (966)
T ss_pred ccchHHHHHHHHHHHhcCeeehhHHHHHHHHHHHHHHHhccccHHHHHHHHHHhcccccCcCCCHHHHHHHHHHHHHHHH
Confidence 3444566666643 333321 1233445555444432 3455666677776664433 34555555555431
Q ss_pred -------------HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 180 -------------LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 180 -------------~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
...+..+++.||..++|.|..-+|+-.+..+.....++.+..||..+..++ ..++...|-.++.
T Consensus 456 e~~g~~v~v~l~vD~~lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~---sq~~q~~l~lLL~ 532 (966)
T KOG4286|consen 456 QEHGNLVNVPLCVDMCLNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASST---SQCDQRRLGLLLH 532 (966)
T ss_pred HHcccccccchHHHHHHHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCch---hhHHHHHHHHHHH
Confidence 124677889999999999999999988777766666777778998887665 2444555555555
Q ss_pred H
Q 023338 247 T 247 (283)
Q Consensus 247 ~ 247 (283)
.
T Consensus 533 d 533 (966)
T KOG4286|consen 533 D 533 (966)
T ss_pred H
Confidence 4
No 146
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=90.95 E-value=1.8 Score=37.72 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 213 AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 213 ~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+++..+..+.++.+-.++ ..+-|.+|...+..+
T Consensus 171 riTKadA~~FWr~~fg~k---~ivPW~~F~q~L~~~ 203 (563)
T KOG1785|consen 171 RITKADAAEFWRKHFGKK---TIVPWKTFRQALHKV 203 (563)
T ss_pred eeccccHHHHHHHhcCCc---ccccHHHHHHHHHhc
Confidence 345555555555554443 345566666555543
No 147
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=90.26 E-value=7.7 Score=32.57 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCCCccCHHHHHHHHHhcC--ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH-----HH----HHHHHHHhccCCC
Q 023338 127 DNSGLIDDKELQGALSSYN--QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL-----QN----WRAMFEKVDRDRS 195 (283)
Q Consensus 127 d~~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-----~~----~~~~f~~~D~~~~ 195 (283)
.-||.|+..|+. +.+.+. ..++.+..+.+...++.......++.+|+..+... .. |..+|+..= -|
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~--AD 143 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAF--AD 143 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--hc
Confidence 458999999987 334332 34556664444444443334447899998877531 11 233444433 34
Q ss_pred CccCHHHHHHHHHHc-CCCCCHHHHHHHHHHHh
Q 023338 196 GKIDSNELREALMSL-GFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 196 G~i~~~el~~~l~~l-~~~~~~~~i~~l~~~~d 227 (283)
|.|+..|-.-+..-. .+.++..+.+.++..+.
T Consensus 144 G~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 144 GSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 778888744433321 23467777777776654
No 148
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=89.83 E-value=2 Score=27.03 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=36.0
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 196 GKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 196 G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
-.++.+||.++|..|...++..++..++..+-. +..+.|..+...+....
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~-------~er~k~~~M~~~L~~y~ 57 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVHG-------IERDKFVDMQENLKEYI 57 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHH
Confidence 468889999999999988898888888887733 33455666655544433
No 149
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=89.54 E-value=3.1 Score=31.42 Aligned_cols=85 Identities=12% Similarity=0.181 Sum_probs=52.5
Q ss_pred ccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 023338 167 KIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL----GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFI 242 (283)
Q Consensus 167 ~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l----~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~ 242 (283)
.-+.+-+......+..+.+-...+|+.+.++|+.+||+.++=.+ ...+. +++.++.+.........++ .+..
T Consensus 55 ~~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P---~Ee~Lrql~~~~~~~~~~~-a~l~ 130 (148)
T PF12486_consen 55 APQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVP---LEEQLRQLQQQKEQGQPPS-ALLK 130 (148)
T ss_pred chhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCChH-HHHH
Confidence 34567777788888888888899999999999999999877543 22222 4444444433321112233 5555
Q ss_pred HHHHHHHHHHHHh
Q 023338 243 ECCLTVKGLTEKF 255 (283)
Q Consensus 243 ~~~~~~~~~~~~f 255 (283)
.+-..++.+...|
T Consensus 131 qi~~~l~~Ll~RY 143 (148)
T PF12486_consen 131 QIDNRLNQLLSRY 143 (148)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
No 150
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.34 E-value=14 Score=35.38 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=7.4
Q ss_pred cCHHHHHHHHHh
Q 023338 132 IDDKELQGALSS 143 (283)
Q Consensus 132 i~~~el~~~l~~ 143 (283)
+|.++|++.++.
T Consensus 401 lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 401 LDFSRFEEQFKI 412 (830)
T ss_pred hhHHHHHHHHHh
Confidence 456666666655
No 151
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=89.28 E-value=2.9 Score=29.24 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=30.1
Q ss_pred CCccCHHHHHHHHHhcC--ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 129 SGLIDDKELQGALSSYN--QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
||.++..|...+...+. ..++.++.+.+++.+........++.+|+..+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 67888877666554332 245666667776666554444456666665543
No 152
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=88.03 E-value=3.2 Score=30.50 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=16.0
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
+..++..||.+++|.|+.-.|+..|..
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHH
Confidence 344566777777777777777766654
No 153
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.71 E-value=16 Score=30.91 Aligned_cols=94 Identities=10% Similarity=0.088 Sum_probs=58.7
Q ss_pred HHHHhccCCCCccCHHHHHH-HH---HHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCC
Q 023338 186 MFEKVDRDRSGKIDSNELRE-AL---MSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTT 261 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~-~l---~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~ 261 (283)
.|+.+........+...+.. .| +.+|..++.+++-.+++.+-..-..+...+|.++++..+.+......|+..+.+
T Consensus 78 Fl~lLn~~~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~ 157 (292)
T PF13929_consen 78 FLKLLNIADPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPD 157 (292)
T ss_pred HHHHHhhcCcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcc
Confidence 34444444445555554333 22 247888898888888877544433235577888888888877777777766555
Q ss_pred CCceeeeeHHHHHHHhccccc
Q 023338 262 YSGSATFTYENFMLAVLPFLI 282 (283)
Q Consensus 262 ~~g~i~~~~~~~~~~~~~~~~ 282 (283)
+.| +.-+++++.++..++
T Consensus 158 --~~I-i~d~evislLL~sMv 175 (292)
T PF13929_consen 158 --ESI-IFDEEVISLLLKSMV 175 (292)
T ss_pred --cce-eeChHHHHHHHHHHH
Confidence 333 455677777766554
No 154
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=87.59 E-value=3.8 Score=30.55 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=32.6
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCC-------CCccCHHHHHHHHHh-------HHHHHHHHHHhccC
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTN-------ARKIGPKEFIQVFHS-------LQNWRAMFEKVDRD 193 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~-------~g~i~~~ef~~~~~~-------~~~~~~~f~~~D~~ 193 (283)
.+.|+..||.++-+-+ ..+...++++++.|..++ .+.|+++-|..++.. .+-.+.+|..|-+.
T Consensus 5 ~~~lsp~eF~qLq~y~--eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYS--EYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp -S-S-HHHHHHHHHHH--HH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred eeccCHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 4677888887766544 335667888888875432 346777777777653 23456666666443
No 155
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.84 E-value=2.2 Score=40.87 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=70.2
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHH-HHHHHHHHhcCCCCCccCHHHHHHHHHhH-----HHHHHHH---
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLR-TVRLLMYTFTNTNARKIGPKEFIQVFHSL-----QNWRAMF--- 187 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~-~~~~l~~~~d~~~~g~i~~~ef~~~~~~~-----~~~~~~f--- 187 (283)
+|+.+..+|......|+..+|+..|....+.++.. .+++-+.. |...++.++|+.|..++..+ .....-|
T Consensus 146 lrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~ 224 (1267)
T KOG1264|consen 146 LRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKD 224 (1267)
T ss_pred HHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhccchhhhhcccch
Confidence 45555567777777799999999888776665432 22222222 23345679999998887643 1111111
Q ss_pred -HH--hccCCCCccCHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhCC--C-CCCcccHHHHHHH
Q 023338 188 -EK--VDRDRSGKIDSNELREALMSLGFAVS---PVVLDLLVTKFDKTG--G-KSKAIEYDNFIEC 244 (283)
Q Consensus 188 -~~--~D~~~~G~i~~~el~~~l~~l~~~~~---~~~i~~l~~~~d~~~--d-~~g~i~~~eF~~~ 244 (283)
-. -|...--.+...||.++|..--.... ...|+.+++.|-.|. + .+--++++||+.+
T Consensus 225 ~~~~~~~~~d~~vV~~~ef~rFL~~~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~f 290 (1267)
T KOG1264|consen 225 FILGNTDRPDASVVYLQEFQRFLIHEQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTF 290 (1267)
T ss_pred hhhcCCCCccceEeeHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHH
Confidence 11 12222256788888888875322211 223455555553332 1 1235777888777
No 156
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=86.49 E-value=5.6 Score=34.07 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=40.5
Q ss_pred HHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 187 FEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 187 f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
...+|..+.|.++.--++..|..+....-.+.++.|+...... +|.+.+..|.+++..
T Consensus 116 LaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds---~gim~~i~~~~fl~e 173 (434)
T KOG4301|consen 116 LAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDS---RGIMQEIQRDQFLHE 173 (434)
T ss_pred HhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccc---hHHHHHHHHHHHHHH
Confidence 4457999999999988888888764443455566666666443 477777777777664
No 157
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=86.43 E-value=1.8 Score=33.69 Aligned_cols=43 Identities=7% Similarity=0.132 Sum_probs=30.2
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLM 157 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~ 157 (283)
+.+|++|..||.++--..+.+++..+|...++.-....|+.++
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i 97 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATI 97 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHH
Confidence 4577888888888777788888888887766555555444443
No 158
>PF06511 IpaD: Invasion plasmid antigen IpaD; InterPro: IPR009483 This family consists of several invasion plasmid antigen IpaD proteins. Entry of Shigella flexneri into epithelial cells and lysis of the phagosome involve the IpaB, IpaC, and IpaD proteins, which are secreted by type III secretion machinery, and appear to form a multi-protein complex capable of inducing the phagocytic event which internalizes the bacterium [].; GO: 0009405 pathogenesis; PDB: 3R9V_B 2JAA_B 2J0O_A 2J0N_B 2P7N_A 2YM9_A 3NZZ_A 3O02_A 3O00_A 2YM0_B ....
Probab=86.18 E-value=1.7 Score=37.29 Aligned_cols=64 Identities=17% Similarity=0.307 Sum_probs=41.0
Q ss_pred ccCHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHH-----------HH
Q 023338 197 KIDSNELREALMSLGFA--------------VSPVVLDLLVTKFDKTGG-KSKAIEYDNFIECCLTV-----------KG 250 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~--------------~~~~~i~~l~~~~d~~~d-~~g~i~~~eF~~~~~~~-----------~~ 250 (283)
.++.+|.+.++..|+.. ++...|+.|+..++.-++ ++..|+-.+|-.+..-+ ..
T Consensus 224 ~~~~~EA~~W~~eLg~~~~~vk~~~g~~~I~~D~spL~~m~~sl~~~~~~~~~~~~~a~~qaw~~~f~~~~~~~~~~~q~ 303 (337)
T PF06511_consen 224 TVSQEEAEKWLKELGLPFFCVKQSGGGIVISPDMSPLDKMIKSLDGLGSNGDVELSTAEYQAWQAGFDAQKNNIQSNVQS 303 (337)
T ss_dssp -BTHHHHHHHHHHHTTTGGGEEEETTCEEEEE-THHHHHHHHHHHHTTSTSCEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCceEEecCCceEEEeCchHHHHHHHhccCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56788999999988642 355679999999987543 12345567777666543 34
Q ss_pred HHHHhhhcCC
Q 023338 251 LTEKFKERDT 260 (283)
Q Consensus 251 ~~~~f~~~d~ 260 (283)
+.+.|+..+.
T Consensus 304 ~~~kys~ans 313 (337)
T PF06511_consen 304 LTQKYSQANS 313 (337)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhccc
Confidence 5555655543
No 159
>PRK15330 cell invasion protein SipD; Provisional
Probab=85.88 E-value=15 Score=31.51 Aligned_cols=64 Identities=19% Similarity=0.266 Sum_probs=39.9
Q ss_pred ccCHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHhhCC---CC-CCcccHHHHHHHHHHH----------
Q 023338 197 KIDSNELREALMSLGFA--------------VSPVVLDLLVTKFDKTG---GK-SKAIEYDNFIECCLTV---------- 248 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~--------------~~~~~i~~l~~~~d~~~---d~-~g~i~~~eF~~~~~~~---------- 248 (283)
..+.+|++.+++.++.. ++...|+.|+..++..+ ++ ++.|+-.+|-.+..-+
T Consensus 225 ~~t~aEae~W~keLgl~~~~vk~~Gsgf~V~iD~~~I~~m~~Sl~g~g~~GkGS~~~I~tAsYQAWqAgFdAqk~~lqSn 304 (343)
T PRK15330 225 VATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGKDSKLEMDNAKYQAWQSGFKAQEENLKTT 304 (343)
T ss_pred cCCHHHHHHHHHHhCCCccccccCCCceEEecCcHHHHHHHHhccCCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999876332 23446888888877522 11 2368778887776643
Q ss_pred -HHHHHHhhhcCC
Q 023338 249 -KGLTEKFKERDT 260 (283)
Q Consensus 249 -~~~~~~f~~~d~ 260 (283)
..+.+.|++.+.
T Consensus 305 mQtLaQKYSqANS 317 (343)
T PRK15330 305 LQTLTQKYSNANS 317 (343)
T ss_pred HHHHHHHHhhccc
Confidence 345555655554
No 160
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.81 E-value=19 Score=29.89 Aligned_cols=63 Identities=13% Similarity=0.251 Sum_probs=43.0
Q ss_pred chhHHHHHHH-HccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHH--HhcCCCCCccCHHHHHHHHH
Q 023338 114 DPNIVACFQL-ADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMY--TFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 114 ~~~l~~~F~~-~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~--~~d~~~~g~i~~~ef~~~~~ 178 (283)
...+.++|.. .|.+.+..|-.+-+..++..++... +++..|+- .++...-+.++.+||+.-+.
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p--~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~ 128 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEP--EDISVLVLAWKLGAATMCEFSREEFLKGMT 128 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCc--hhHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3457777775 4666667888888999999887664 33333332 34566667888899988655
No 161
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=85.76 E-value=21 Score=30.30 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=37.8
Q ss_pred CHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHhhCCCC-CCcccHHHHHHHHHH-----------HHHHHH
Q 023338 199 DSNELREALMSLGFAV-------------SPVVLDLLVTKFDKTGGK-SKAIEYDNFIECCLT-----------VKGLTE 253 (283)
Q Consensus 199 ~~~el~~~l~~l~~~~-------------~~~~i~~l~~~~d~~~d~-~g~i~~~eF~~~~~~-----------~~~~~~ 253 (283)
+.+|++.+.+.|+..+ +-..+++|...+...+.+ +..|+-.+|-.+..- +..+.+
T Consensus 196 s~~Ea~~W~keLg~~v~~~~~~~~G~I~~dl~~i~~m~~sl~~~g~g~~~~~~~A~YQAWqAgFdaq~~~iqsn~Qtl~q 275 (308)
T TIGR02553 196 KEADARRWRKELGLPVSCLQISDSGVVTVDPTPLIKMRDDLPPLGTGTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQ 275 (308)
T ss_pred cHHHHHHHHHHhCCCCccccccCCCeEEeChHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889988887533 345577788887655431 124666777666653 334555
Q ss_pred HhhhcCC
Q 023338 254 KFKERDT 260 (283)
Q Consensus 254 ~f~~~d~ 260 (283)
.|++.+.
T Consensus 276 KYSqANS 282 (308)
T TIGR02553 276 KYSNANS 282 (308)
T ss_pred HHhhccc
Confidence 5655554
No 162
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=85.68 E-value=1.3 Score=44.68 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=49.3
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
.|+.+|.|+.|.|+.++|.+++.... ..+..+++-|++-...+.+..+++++|+..+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 47788999999999999999998543 46778888888888888888999999998765
No 163
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=85.42 E-value=6.1 Score=30.06 Aligned_cols=56 Identities=13% Similarity=0.239 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCC
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRS 195 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~ 195 (283)
|+..+..+-|++.+.+.+-+.-+.++..+-.++.|.| +..| ..++.+.+.||.|++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~-y~~~-------~~iknlm~~yd~dgd 57 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM-YTNI-------QGIKNLMSQYDKDGD 57 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce-eehH-------HHHHHHHHhcCCCCc
Confidence 3445666667777776666666666666555554432 3333 235556666776653
No 164
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=85.31 E-value=10 Score=26.34 Aligned_cols=87 Identities=11% Similarity=0.076 Sum_probs=52.7
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCC
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDR 194 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~ 194 (283)
+.++++|..+-. .|...+.+.+.+.+| +++.+++.+....-.+ . +.+..+++..-...
T Consensus 4 ~~l~~~f~~i~~----~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~------~----------eq~~qmL~~W~~~~ 61 (96)
T cd08315 4 ETLRRSFDHFIK----EVPFDSWNRLMRQLG--LSENEIDVAKANERVT------R----------EQLYQMLLTWVNKT 61 (96)
T ss_pred hHHHHHHHHHHH----HCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCC------H----------HHHHHHHHHHHHhh
Confidence 568888886644 366778888888775 6688888777653221 1 11222222221111
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLV 223 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~ 223 (283)
...-+.+.|...|..++.+...+.|++.+
T Consensus 62 G~~At~~~L~~aL~~~~~~~~Ae~I~~~l 90 (96)
T cd08315 62 GRKASVNTLLDALEAIGLRLAKESIQDEL 90 (96)
T ss_pred CCCcHHHHHHHHHHHcccccHHHHHHHHH
Confidence 22445677888888888877777776554
No 165
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=84.79 E-value=2.5 Score=33.00 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=41.6
Q ss_pred HHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 176 VFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 176 ~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
.+++-+..+++|..||.++--..+.++++++|...++-.....|+.++..+
T Consensus 50 VL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA 100 (188)
T COG2818 50 VLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNA 100 (188)
T ss_pred HHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHH
Confidence 344557789999999999999999999999999888777777777666654
No 166
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=84.74 E-value=3 Score=36.79 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.6
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHh
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSS 143 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~ 143 (283)
+.|+.+-+..|.|.+|.|+++|--.+|+.
T Consensus 68 EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 68 EAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred HHHHHHHHhcccccCCCcccccchHHHHH
Confidence 56899999999999999999998888765
No 167
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=84.68 E-value=4.6 Score=28.01 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=19.8
Q ss_pred CCccCHHHHHHHHHhH---HHHHHHHHHh---ccCCCCccCHHHHHHHHHHc
Q 023338 165 ARKIGPKEFIQVFHSL---QNWRAMFEKV---DRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 165 ~g~i~~~ef~~~~~~~---~~~~~~f~~~---D~~~~G~i~~~el~~~l~~l 210 (283)
+|.|...+|..|+... +-..++|..+ -.-....|+.+||.++...+
T Consensus 42 dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 42 DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 4555556665555421 1222223222 11223566677666666543
No 168
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.54 E-value=6.9 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=41.9
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 176 (283)
+..++-.+..-++..+|.+++.++|...+..+...++..+++.+.. .+++|++..
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa~ 59 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIAA 59 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHH
Confidence 3344445555566779999999999999999999999999998854 356776553
No 169
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.37 E-value=26 Score=30.20 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=6.7
Q ss_pred eHHHHHHHhcc
Q 023338 269 TYENFMLAVLP 279 (283)
Q Consensus 269 ~~~~~~~~~~~ 279 (283)
+.|||+..++.
T Consensus 344 sReQF~~rat~ 354 (365)
T KOG2391|consen 344 SREQFILRATM 354 (365)
T ss_pred HHHHHHHHHHH
Confidence 66677665543
No 170
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=84.04 E-value=7.8 Score=27.74 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=41.2
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 185 AMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 185 ~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
.+|.++..-++..++.++|+.+|+..|..+....++.+++.+.. .+.+|++..
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-------KdI~ELIa~ 59 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-------KTPHELIAA 59 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-------CCHHHHHHH
Confidence 34555556667789999999999999999999999999988833 455666653
No 171
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=83.84 E-value=1.9 Score=28.00 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+-++++..|..+|... +..+.++.+...++.-. .++|+.+||++.++.+
T Consensus 6 sp~~~F~~L~~~l~~~---l~~~~~~~l~~~Y~~~k--~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 6 SPWMPFPMLFSALSKH---LPPSKMDLLQKHYEEFK--KKKISREEFVRKLRQI 54 (70)
T ss_pred CCcccHHHHHHHHHHH---CCHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 4456655555555543 45555555555554434 2679999998888764
No 172
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=83.56 E-value=9 Score=28.58 Aligned_cols=81 Identities=15% Similarity=0.222 Sum_probs=31.2
Q ss_pred CccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 166 RKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 166 g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
+.++-+||..+...++.+..+--.+ .|.+|.|+.+.|...=..- ......+++-.|..+.....+...++-+||-..+
T Consensus 38 ~~lgeeEfeef~~lLK~lt~~kLky-gD~NGnidye~ls~~eqee-~k~~~~eLqPYFdKLN~~~SsK~vlt~~E~d~y~ 115 (162)
T PF12207_consen 38 GELGEEEFEEFKELLKKLTNAKLKY-GDKNGNIDYEKLSKEEQEE-YKKLTMELQPYFDKLNGHKSSKEVLTQEEYDQYI 115 (162)
T ss_dssp HCS-HHHHHHHHHHHHHHHHHHHHH-B-TTS-B-GGGS-HHHHHH-HHHHHHHHHHHHHHHTT---HHHHS-HHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHhHHhh-cccCCCcCHHhCCHHHHHH-HHHHHHhcchHHHHhcCCcchhhhcCHHHHHHHH
Confidence 3455666666665555555544444 4455555544221110000 0000123444455444433222345666666554
Q ss_pred HHH
Q 023338 246 LTV 248 (283)
Q Consensus 246 ~~~ 248 (283)
..+
T Consensus 116 eAL 118 (162)
T PF12207_consen 116 EAL 118 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 173
>PLN02222 phosphoinositide phospholipase C 2
Probab=83.55 E-value=5 Score=37.52 Aligned_cols=62 Identities=13% Similarity=0.240 Sum_probs=28.7
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGF--AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~--~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
+++.+|..+-. ++.++.++|.++|..... ..+.+.++.|+..+..... .+.|+++.|.+++.
T Consensus 26 ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~-~~~~~~~gF~~yL~ 89 (581)
T PLN02222 26 EIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLH-RNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhh-ccCcCHHHHHHHhc
Confidence 44455555432 245555555555554321 2344445555554422111 23466666666554
No 174
>COG4807 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.46 E-value=12 Score=27.33 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
++.++-+|..-+. ++..+|...++.++.-|+..+++.-+.
T Consensus 90 LkKLRiAf~lK~~---------Dm~~I~~~~~f~vS~pElsAlfR~~~h 129 (155)
T COG4807 90 LKKLRIAFSLKTD---------DMLAILTEQQFRVSMPELSALFRAPDH 129 (155)
T ss_pred HHhHhHhhhcccc---------hHHHHHhccCcccccHHHHHHHhCCCc
Confidence 4566666665443 356788888889999999988876543
No 175
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=83.01 E-value=9.1 Score=27.02 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=43.2
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 176 (283)
+..+|-.++.-++...+..+++++|..+|.....+.++.+++.+... +++|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK-----~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGK-----DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-----CHHHHHHH
Confidence 34456666777777889999999999999999999999999988642 46666544
No 176
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.86 E-value=7 Score=29.18 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=38.2
Q ss_pred CccCHHHHHHHHHhH----HHHHHHHHHhccC-------CCCccCHHHHHHHHHH-cCCCCCHHHHHHHHHHHhhCC
Q 023338 166 RKIGPKEFIQVFHSL----QNWRAMFEKVDRD-------RSGKIDSNELREALMS-LGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 166 g~i~~~ef~~~~~~~----~~~~~~f~~~D~~-------~~G~i~~~el~~~l~~-l~~~~~~~~i~~l~~~~d~~~ 230 (283)
+.|+-+||..+-..+ ++++++.+.|..+ ..+.|+.+-|+..|+. +...+.++.++.||..|....
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 456777777665432 3566666666433 3569999999999987 455688888999999986654
No 177
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=82.57 E-value=16 Score=27.53 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=49.4
Q ss_pred CCccCHHHHHHHHHhcC---ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHH
Q 023338 129 SGLIDDKELQGALSSYN---QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELRE 205 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~ 205 (283)
|-.+.+..+.++++... -.++ +++++.+..+ ..||++++.. ++-+.+.+++.-+|+.++|-.
T Consensus 30 Dr~LPIANV~RIMK~~lP~naKIs-KDAKE~vQEC---------VSEfISFvT~-----EAsekC~~EkRKTIngdDllw 94 (168)
T KOG0869|consen 30 DRFLPIANVSRIMKKALPANAKIS-KDAKETVQEC---------VSEFISFVTG-----EASEKCQREKRKTINGDDLLW 94 (168)
T ss_pred hhhccHHHHHHHHHhcCCcccccc-hHHHHHHHHH---------HHHHHHHHhh-----HHHHHHHHHhcCcccHHHHHH
Confidence 44556666666666531 1122 2334444433 5578887763 344555667778999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHH
Q 023338 206 ALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 206 ~l~~l~~~~~~~~i~~l~~~~ 226 (283)
+|..||+.--.+-++..+..+
T Consensus 95 Am~tLGFe~Y~eplkiyL~kY 115 (168)
T KOG0869|consen 95 AMSTLGFENYAEPLKIYLQKY 115 (168)
T ss_pred HHHHcCcHhHHHHHHHHHHHH
Confidence 999998764444444444443
No 178
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=82.06 E-value=5.5 Score=27.84 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=27.5
Q ss_pred CCccCHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 195 SGKIDSNELREALMSL--GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l--~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
||.++.+|...+-..+ .+.++.++.+.++..+..... ...++.+|.+.+.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~ 64 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEE--EAPDLYEFTSLIK 64 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 4566666655444332 124566666666666655432 3466666666655
No 179
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=81.68 E-value=20 Score=26.85 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=35.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 170 PKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 170 ~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
.-||+.++. .++-+..+.+...+|..+-+..+|.+||+.---++++.+...+
T Consensus 44 CvEFI~liS-----sEAneic~~e~KKTIa~EHV~KALe~LgF~eYiee~~~vl~~~ 95 (156)
T KOG0871|consen 44 CVEFINLIS-----SEANEICNKEAKKTIAPEHVIKALENLGFGEYIEEAEEVLENC 95 (156)
T ss_pred HHHHHHHHH-----HHHHHHHhHHhcccCCHHHHHHHHHHcchHHHHHHHHHHHHHH
Confidence 345666554 3456667788888999999999999999873334444444443
No 180
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=81.46 E-value=19 Score=32.78 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTE 253 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~ 253 (283)
.+..+...||.- .++.+-++.+|+.+ .+++|+++|-...-.+-. --.=+-|.|+..+..+..+.+
T Consensus 371 VI~AA~~~FD~~---~~~KDGIEK~L~Mm---Pt~eE~qkIe~aqlaNPE-ipLG~AEQfLLtLSsI~~L~a 435 (817)
T KOG1925|consen 371 VIKAALLNFDEF---AVSKDGIEKLLTMM---PTEEERQKIEGAQLANPE-IPLGPAEQFLLTLSSIGGLAA 435 (817)
T ss_pred hhHHHHhcchhh---hcchhhHHHHHHhC---CCHHHHHHHHHHHhcCCC-CCCCcHHHHHHHHhhhHHHHH
Confidence 344555555543 55566678888865 577888877554433321 011244777777776655544
No 181
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=81.46 E-value=2.5 Score=31.36 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=27.0
Q ss_pred CCCccCHHHHHHHHHhc--CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 128 NSGLIDDKELQGALSSY--NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
-||.|+.+|+..+...+ ...++......++..++......+++.+|+..+.
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 88 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELR 88 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHC
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 36788888877665544 2334455555555555433333455666665554
No 182
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=81.43 E-value=2.8 Score=32.75 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=21.9
Q ss_pred CCCccCHHH-HHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 194 RSGKIDSNE-LREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 194 ~~G~i~~~e-l~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.+++|+..+ |.++|..++... ++.++.+.+.+..|. .+.||++++.
T Consensus 40 ls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp------~fKef~e~ik 86 (220)
T COG4359 40 LSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP------GFKEFVEWIK 86 (220)
T ss_pred hhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc------cHHHHHHHHH
Confidence 344555544 556666555443 333444444444432 2455555544
No 183
>PRK03968 DNA primase large subunit; Validated
Probab=81.08 E-value=17 Score=31.65 Aligned_cols=32 Identities=16% Similarity=0.140 Sum_probs=17.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023338 194 RSGKIDSNELREALMSLGFAVSPVVLDLLVTK 225 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~ 225 (283)
....|..+++..+.+..+..+..++++.++-.
T Consensus 118 ~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~ 149 (399)
T PRK03968 118 NAIEIPEKDRKILERVRGRELPPEELEDLLPE 149 (399)
T ss_pred ccccccchhhhhhhhhcccccCHHHHHHHhhh
Confidence 34445555555555555555555555554443
No 184
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=80.87 E-value=16 Score=25.91 Aligned_cols=41 Identities=17% Similarity=0.372 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
++.++|+.+|...+..++.+.+..+++.+.. ++.++++...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-------k~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-------KNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-------CCHHHHHHHH
Confidence 9999999999999999999999999988832 4556666543
No 185
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=80.45 E-value=12 Score=26.71 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=40.5
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
++-.+..-++..+|.+++.++|+..+..+....+..+++.+.. .+++|++...
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g 58 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAG 58 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHh
Confidence 4444455566789999999999999999999999999988854 3566665543
No 186
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=80.36 E-value=11 Score=26.60 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=10.6
Q ss_pred HhccCCCCccCHHHHHHHHH
Q 023338 189 KVDRDRSGKIDSNELREALM 208 (283)
Q Consensus 189 ~~D~~~~G~i~~~el~~~l~ 208 (283)
.+|++.+-.|+.+++++++.
T Consensus 11 LYDT~tS~YITLedi~~lV~ 30 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVR 30 (107)
T ss_pred ccCCCccceeeHHHHHHHHH
Confidence 34555555555555555554
No 187
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=80.11 E-value=8.4 Score=27.15 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=36.1
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
.|+.+.|..+|...|..+....++.+++.++. ++++|.+...
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-----~~idE~i~~~ 57 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALEG-----VDIDEVIKNA 57 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-----CCHHHHHHHh
Confidence 89999999999999999999999999999864 4677766544
No 188
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=79.11 E-value=15 Score=26.26 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=41.4
Q ss_pred HHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 185 AMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 185 ~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
.+|.++..-++..++.++|+.+|+..|..+....+..+++.+.. .+.++++...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-------Kdi~eLIa~g 58 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-------KDVEELIAAG 58 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-------CCHHHHHHHh
Confidence 34555666677789999999999999999998889988888832 4456665543
No 189
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.80 E-value=2.8 Score=32.80 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=42.0
Q ss_pred HHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 174 IQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 174 ~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
...+++.+.++++|..||.++=-..+.+++++++..-+.-.....|+.++..+
T Consensus 46 ~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA 98 (179)
T TIGR00624 46 ITVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANA 98 (179)
T ss_pred HHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHH
Confidence 34445567889999999999988999999999998877666666777777654
No 190
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=78.78 E-value=27 Score=31.67 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=46.3
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHH--------
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTE-------- 253 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~-------- 253 (283)
.+.-+|+..|.++--.|+.++|+.+|.-++.+ -+++...+ |.|+-...-.+.+.+-.+++
T Consensus 129 vL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~-----~~e~~~~y-------G~is~aS~gaI~R~ll~LE~qG~d~FFG 196 (502)
T PF05872_consen 129 VLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN-----AKELSAEY-------GNISSASIGAIQRALLVLEQQGGDQFFG 196 (502)
T ss_pred HHHHHHHHhccCCCccccHHHHHHHHHHHHhh-----HHHHHHHc-------CCccHHHHHHHHHHHHHHHHcchHhhCC
Confidence 46778888888888888888888888766322 23333333 44555444444443322221
Q ss_pred -------HhhhcCCCCCceeee
Q 023338 254 -------KFKERDTTYSGSATF 268 (283)
Q Consensus 254 -------~f~~~d~~~~g~i~~ 268 (283)
-|-+.|.++.|.|++
T Consensus 197 EPaldi~Dl~r~~~~GrG~Ini 218 (502)
T PF05872_consen 197 EPALDIEDLMRTDADGRGVINI 218 (502)
T ss_pred CccCCHHHHhccCCCCCEEEEE
Confidence 233557799999987
No 191
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.72 E-value=1.7 Score=37.63 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHH-HHhcCCCCCccCHHHHHHH
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLM-YTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~-~~~d~~~~g~i~~~ef~~~ 176 (283)
.....+|++|+..|...++.|+..-|+.+++.++..+++.+...++ ..+|.+.-+.|-.++|...
T Consensus 306 ~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 306 NPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGE 371 (449)
T ss_pred CCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccccc
Confidence 3457899999999999999999999999999988555555444333 4466666666655555443
No 192
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=78.71 E-value=2.9 Score=31.05 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred CCccCHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHHHHHhhhcCCCCCce
Q 023338 195 SGKIDSNELREALMSL--GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT-------VKGLTEKFKERDTTYSGS 265 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l--~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~-------~~~~~~~f~~~d~~~~g~ 265 (283)
||.|+.+|+..+...+ ...++..+++.++..++.... ..+++++|+..+.. ..-+...+..... +|.
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~A--DG~ 112 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQ--EPIDLEELLRELRDSLSPEEREDLLRMLIAIAYA--DGE 112 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHH--HCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCTC--TTC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHhhchHHHHHHHHHHHHHHhc--CCC
Confidence 5667777766655543 223345555666555544331 23556666655443 1122233333333 466
Q ss_pred eeeeHHHHHHHhcc
Q 023338 266 ATFTYENFMLAVLP 279 (283)
Q Consensus 266 i~~~~~~~~~~~~~ 279 (283)
++-.+.+++..+..
T Consensus 113 ~~~~E~~~l~~ia~ 126 (140)
T PF05099_consen 113 ISPEEQEFLRRIAE 126 (140)
T ss_dssp -SCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776644
No 193
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=78.63 E-value=2.2 Score=33.60 Aligned_cols=52 Identities=13% Similarity=0.287 Sum_probs=40.5
Q ss_pred HHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 175 QVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 175 ~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
..+++.+.++.+|..||.++=-.++.++++++|..-+.-.....|+.++..+
T Consensus 48 tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA 99 (187)
T PRK10353 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNA 99 (187)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHH
Confidence 3445567889999999999888889999999998766655666677666654
No 194
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=78.32 E-value=3.4 Score=26.77 Aligned_cols=28 Identities=11% Similarity=0.322 Sum_probs=23.8
Q ss_pred chhHHHHHHHHccCCCCccCHHHHHHHHH
Q 023338 114 DPNIVACFQLADRDNSGLIDDKELQGALS 142 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~~g~i~~~el~~~l~ 142 (283)
.++++.+|+.+ .++...|+.+||++.|.
T Consensus 5 ~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp CHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 47899999999 66789999999999864
No 195
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.09 E-value=5.8 Score=32.62 Aligned_cols=43 Identities=7% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
|.++.+.+|.+ ..| .+|++++|..+...+-++.+...++.++.
T Consensus 160 l~dLvqqId~~--~~L-D~dVedlLleiADdFV~sii~~sC~LAKH 202 (258)
T KOG1142|consen 160 LDDLVQQIDGT--TKL-DDDVEDLLLEIADDFVSSIIHRSCKLAKH 202 (258)
T ss_pred hhHHHHhhcCc--ccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555433 333 34566666665444444444444444433
No 196
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=78.07 E-value=5.6 Score=33.95 Aligned_cols=128 Identities=17% Similarity=0.152 Sum_probs=75.6
Q ss_pred CchhHHHHHHHH--ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHHHHHHHHH
Q 023338 113 TDPNIVACFQLA--DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQNWRAMFEK 189 (283)
Q Consensus 113 ~~~~l~~~F~~~--d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~f~~ 189 (283)
.+++|..+...+ |-|+...+-.+||......+.-......++-|.+.+-.+=+|.|-+.|....+.+ ...+.++|..
T Consensus 39 ~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~l 118 (351)
T CHL00185 39 NIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLL 118 (351)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHH
Confidence 446777777754 5666777777777775555533334445566666777777787777777766643 3567788887
Q ss_pred hccCC---CCccCHHHHHHHHHHcCCCCCHHHHHH-----------HHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 190 VDRDR---SGKIDSNELREALMSLGFAVSPVVLDL-----------LVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 190 ~D~~~---~G~i~~~el~~~l~~l~~~~~~~~i~~-----------l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
.-+|. -|.| .+.|+..+..++--.+.. |+...-. +.+|.|-.++.+.+.++
T Consensus 119 MaRDEARHAGFl-----Nkam~df~l~lDLgfLtk~rkYTfF~PkfI~YAtYL----SEKIGYwRYItIyRHLe 183 (351)
T CHL00185 119 MSRDEARHAGFL-----NKAMSDFNLSLDLGFLTKSRKYTFFSPKFIFYATYL----SEKIGYWRYITIYRHLE 183 (351)
T ss_pred HhhhhHHHhhhH-----HHHHHHcCccccchhhccCCceeeecccceehhhHH----HhhhhhhHHhHHHHHHH
Confidence 75553 2444 566766655443222211 1111111 13577777777776654
No 197
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=78.06 E-value=6.2 Score=33.68 Aligned_cols=97 Identities=16% Similarity=0.188 Sum_probs=59.4
Q ss_pred chhHHHHHHHH--ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHHHHHHHHHh
Q 023338 114 DPNIVACFQLA--DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQNWRAMFEKV 190 (283)
Q Consensus 114 ~~~l~~~F~~~--d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~f~~~ 190 (283)
+++|..+...+ |.|+...+--+||......+.-......++-|.+.+-.+=+|.|-+.|....+.+ ...+.++|...
T Consensus 40 ~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 119 (357)
T PLN02508 40 MAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLM 119 (357)
T ss_pred HHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHh
Confidence 45677776643 5566666666676665544433333445566666677777888888887766643 35678888877
Q ss_pred ccCCC---CccCHHHHHHHHHHcCCCCC
Q 023338 191 DRDRS---GKIDSNELREALMSLGFAVS 215 (283)
Q Consensus 191 D~~~~---G~i~~~el~~~l~~l~~~~~ 215 (283)
-+|.. |.| .+.|+..+..++
T Consensus 120 aRDEARHAGFl-----Nkam~Df~l~lD 142 (357)
T PLN02508 120 SRDEARHAGFL-----NKALSDFNLALD 142 (357)
T ss_pred CchhHHHHhHH-----HHHHHHcCcccc
Confidence 66542 443 566666555443
No 198
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=77.86 E-value=3.6 Score=35.17 Aligned_cols=98 Identities=14% Similarity=0.216 Sum_probs=63.3
Q ss_pred CchhHHHHHHHH--ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH-hHHHHHHHHHH
Q 023338 113 TDPNIVACFQLA--DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH-SLQNWRAMFEK 189 (283)
Q Consensus 113 ~~~~l~~~F~~~--d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~-~~~~~~~~f~~ 189 (283)
.+++|..+...+ |.|+...+-.+||...+..+.-......++-|.+.+-.+=+|.|-+.|....++ ....+.++|..
T Consensus 43 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~l 122 (355)
T PRK13654 43 NREELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQL 122 (355)
T ss_pred hHHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHH
Confidence 346777777754 666677777777777655554444444666667777777788887777777665 23577888887
Q ss_pred hccCC---CCccCHHHHHHHHHHcCCCCC
Q 023338 190 VDRDR---SGKIDSNELREALMSLGFAVS 215 (283)
Q Consensus 190 ~D~~~---~G~i~~~el~~~l~~l~~~~~ 215 (283)
.-+|. -|.| .+.|+..+..++
T Consensus 123 MaRDEARHAGFl-----Nkam~df~l~lD 146 (355)
T PRK13654 123 MARDEARHAGFL-----NKAMKDFGLSLD 146 (355)
T ss_pred HhhhHHHHhhhH-----HHHHHHcCcccc
Confidence 75553 2444 566666555443
No 199
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=77.81 E-value=36 Score=27.79 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=7.5
Q ss_pred CchhHHHHHHH
Q 023338 113 TDPNIVACFQL 123 (283)
Q Consensus 113 ~~~~l~~~F~~ 123 (283)
.+.+|++++..
T Consensus 27 ~~~eIrkAY~k 37 (264)
T KOG0719|consen 27 TDKEIRKAYHK 37 (264)
T ss_pred CHHHHHHHHHH
Confidence 44678888774
No 200
>PLN02228 Phosphoinositide phospholipase C
Probab=77.78 E-value=11 Score=35.16 Aligned_cols=50 Identities=8% Similarity=0.058 Sum_probs=21.7
Q ss_pred ccCHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhCCC--CCCcccHHHHHHHHH
Q 023338 197 KIDSNELREALMSLGF--AVSPVVLDLLVTKFDKTGG--KSKAIEYDNFIECCL 246 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~--~~~~~~i~~l~~~~d~~~d--~~g~i~~~eF~~~~~ 246 (283)
.|+.++|.++|...-. ..+.+.++.++..+..... ..+.|+.+.|..++.
T Consensus 38 ~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 38 KMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred ccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 4555555444444311 1233344455554432110 013466666666654
No 201
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=77.54 E-value=26 Score=25.77 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=17.4
Q ss_pred HHHHHHHHHhccCC--CCccCHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDR--SGKIDSNELREALMS 209 (283)
Q Consensus 181 ~~~~~~f~~~D~~~--~G~i~~~el~~~l~~ 209 (283)
..+.++|+.+.-+. +..|+..|++.+|..
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~ 71 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSS 71 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHH
Confidence 34556666654333 356888888888765
No 202
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=77.14 E-value=13 Score=23.48 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHH
Q 023338 170 PKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLL 222 (283)
Q Consensus 170 ~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l 222 (283)
++.|+..+.....++.-++.. .+.+++..+.+..|+.++.+++...
T Consensus 4 l~~Fl~~~~~d~~L~~~l~~~-------~~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 4 LKAFLEKVKTDPDLREKLKAA-------EDPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred HHHHHHHHHcCHHHHHHHHHc-------CCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 556666666656666665553 4578888999999999999988764
No 203
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=76.88 E-value=4.7 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=17.8
Q ss_pred HHhccCCCCccCHHHHHHHHHH
Q 023338 188 EKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 188 ~~~D~~~~G~i~~~el~~~l~~ 209 (283)
++||++.+..|+.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4578888888888888888874
No 204
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=76.87 E-value=27 Score=25.74 Aligned_cols=13 Identities=8% Similarity=0.171 Sum_probs=6.5
Q ss_pred CccCHHHHHHHHH
Q 023338 166 RKIGPKEFIQVFH 178 (283)
Q Consensus 166 g~i~~~ef~~~~~ 178 (283)
..++.++|+..+.
T Consensus 74 ~~~s~~dFl~Rv~ 86 (135)
T COG5502 74 LPFSLDDFLTRVA 86 (135)
T ss_pred CcccHHHHHHHHH
Confidence 3455555554443
No 205
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=76.66 E-value=6.8 Score=25.43 Aligned_cols=31 Identities=19% Similarity=0.376 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 149 SLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 149 ~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
....+..|...++.-..+.|+-+||+..++.
T Consensus 23 ~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 23 PPSKMDLLQKHYEEFKKKKISREEFVRKLRQ 53 (70)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3333444444433333344555555555443
No 206
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=76.17 E-value=5.4 Score=34.55 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=6.8
Q ss_pred ccCHHHHHHHHH
Q 023338 167 KIGPKEFIQVFH 178 (283)
Q Consensus 167 ~i~~~ef~~~~~ 178 (283)
.|+|+|+...+.
T Consensus 7 ~~~LeeLe~kLa 18 (379)
T PF11593_consen 7 NLKLEELEEKLA 18 (379)
T ss_pred CCcHHHHHHHHh
Confidence 456666655554
No 207
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=76.16 E-value=21 Score=24.11 Aligned_cols=50 Identities=6% Similarity=0.027 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.|+.+||..+.+..+..++.+..+.++..+....- ...+-++=.+++..+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~i--nIfn~~~r~~llkei 63 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNI--NIFNEQERKKLLKEI 63 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHH
Confidence 56677777777777777777777777666654432 234444444444433
No 208
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=76.02 E-value=12 Score=33.18 Aligned_cols=30 Identities=10% Similarity=0.077 Sum_probs=21.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 201 NELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 201 ~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
+|.+-++..+....++.||++||..|..-+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ie 152 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIE 152 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccc
Confidence 455556666777788899999998885443
No 209
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=75.90 E-value=6.2 Score=35.59 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=57.2
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHH----------
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQN---------- 182 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~---------- 182 (283)
+...+.-+|+.+|.++--.||.++|+.+|.-++.+ .+++.+.+ |.|+-...-.+.+.+-.
T Consensus 126 Q~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~-----~~e~~~~y-----G~is~aS~gaI~R~ll~LE~qG~d~FF 195 (502)
T PF05872_consen 126 QEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN-----AKELSAEY-----GNISSASIGAIQRALLVLEQQGGDQFF 195 (502)
T ss_pred HHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh-----HHHHHHHc-----CCccHHHHHHHHHHHHHHHHcchHhhC
Confidence 34557788999999888889999999998866322 22333322 33444444444333211
Q ss_pred ------HHHHHHHhccCCCCccCHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 023338 183 ------WRAMFEKVDRDRSGKIDSNELREALMS--LGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 183 ------~~~~f~~~D~~~~G~i~~~el~~~l~~--l~~~~~~~~i~~l~~~~ 226 (283)
+.+ |...|.|+.|.|+.-+..+++.. +-..+.-+.+.++++.+
T Consensus 196 GEPaldi~D-l~r~~~~GrG~IniL~a~~l~~~P~LysTFLLwLLsELfe~L 246 (502)
T PF05872_consen 196 GEPALDIED-LMRTDADGRGVINILAADKLMNSPKLYSTFLLWLLSELFEQL 246 (502)
T ss_pred CCccCCHHH-HhccCCCCCEEEEEEEhHhhhhCcHHHHHHHHHHHHHHHHhC
Confidence 222 22346788888877665555442 11112223455555555
No 210
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=75.73 E-value=25 Score=24.87 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=34.2
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
||.+++.++|...+..+....+..+++.+.. .+++|++...
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g 57 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKG 57 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHH
Confidence 9999999999999999999999999988843 4567766543
No 211
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.57 E-value=49 Score=29.88 Aligned_cols=51 Identities=10% Similarity=0.315 Sum_probs=33.1
Q ss_pred cCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 192 RDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
....|.+..+.|..++....+....+.+.+|+..--.. ...+|.-.+++..
T Consensus 234 ~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~P----nl~TfNalL~c~a 284 (625)
T KOG4422|consen 234 RAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTP----NLFTFNALLSCAA 284 (625)
T ss_pred HHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCC----chHhHHHHHHHHH
Confidence 45678899999988888877777777777776654322 1344554444444
No 212
>PLN02230 phosphoinositide phospholipase C 4
Probab=75.13 E-value=15 Score=34.54 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=40.8
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcC-C--CCCHHHHHHHHHHHhhCC-----CCCCcccHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLG-F--AVSPVVLDLLVTKFDKTG-----GKSKAIEYDNFIECCLT 247 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~-~--~~~~~~i~~l~~~~d~~~-----d~~g~i~~~eF~~~~~~ 247 (283)
.+++.+|..+-.++ +.++.++|.++|.... . ..+.++++.++..+.... -..+.|+++.|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 46777777774333 6788888888887653 1 234555666665442211 01246999999998764
No 213
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=75.02 E-value=33 Score=25.76 Aligned_cols=15 Identities=0% Similarity=0.113 Sum_probs=9.5
Q ss_pred ccHHHHHHHHHHHHH
Q 023338 236 IEYDNFIECCLTVKG 250 (283)
Q Consensus 236 i~~~eF~~~~~~~~~ 250 (283)
++-|++...+.++..
T Consensus 149 ~dtE~Ye~vwkKmPa 163 (175)
T PF04876_consen 149 SDTEHYEKVWKKMPA 163 (175)
T ss_pred CchHHHHHHHHHhhH
Confidence 455777777766654
No 214
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=74.89 E-value=26 Score=34.15 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.7
Q ss_pred ccCHHHHHHHH
Q 023338 197 KIDSNELREAL 207 (283)
Q Consensus 197 ~i~~~el~~~l 207 (283)
.|+.+.++.+|
T Consensus 231 ~It~~~V~~~L 241 (830)
T PRK07003 231 EVTETAVSGML 241 (830)
T ss_pred CcCHHHHHHHh
Confidence 34444444433
No 215
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=74.84 E-value=7.5 Score=33.01 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred CchhHHHHHHHH--ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHHHHHHHHH
Q 023338 113 TDPNIVACFQLA--DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQNWRAMFEK 189 (283)
Q Consensus 113 ~~~~l~~~F~~~--d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~f~~ 189 (283)
.+++|..+...+ |.|+...+-.+||......+.-......++-|.+.+-.+=+|.|-+.|....+.+ ...+.++|..
T Consensus 33 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~~P~lae~F~~ 112 (337)
T TIGR02029 33 VENEWDAMLAEMKADYNRHHFVRNEEFDQSWEHIDGELRQAFIEFLERSCTSEFSGFLLYKELSRRLKNRDPVVAELFQL 112 (337)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhhcchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 345677777744 5566667777777665444433333445566666676777787777777666643 2357778887
Q ss_pred hccCC---CCccCHHHHHHHHHHcCCCCCHHHHHH-----------HHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 190 VDRDR---SGKIDSNELREALMSLGFAVSPVVLDL-----------LVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 190 ~D~~~---~G~i~~~el~~~l~~l~~~~~~~~i~~-----------l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
.-+|. -|.| .+.|+..+..++-..+.. |+...-. +.+|.|-.++.+.+.++
T Consensus 113 MaRDEARHAGFl-----Nkam~df~l~lDLgfLtk~r~YTfF~PkfI~YAtYL----SEKIGYwRYItIyRHLe 177 (337)
T TIGR02029 113 MARDEARHAGFL-----NKALGDFGLALDLGFLTKTRKYTFFRPKFIYYATYL----SEKIGYWRYITIYRHLE 177 (337)
T ss_pred HhhhhHHHhhhH-----HHHHHHcCcccchhhhccCCceeeeccceeehhhHh----HhhhhhHHHHHHHHHHH
Confidence 75553 2444 566776655543322211 1111111 13577777777766654
No 216
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=74.66 E-value=21 Score=25.59 Aligned_cols=49 Identities=18% Similarity=0.155 Sum_probs=36.3
Q ss_pred HHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHH
Q 023338 122 QLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQ 175 (283)
Q Consensus 122 ~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~ 175 (283)
..+-.-++..+|.+++.++|...+..+....++.+++.+.. .+++|++.
T Consensus 8 ll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 8 LLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 33333455679999999999999999999999988888854 24555543
No 217
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=74.59 E-value=25 Score=24.89 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIE 243 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~ 243 (283)
.|+.+.|..+|...|..++...++.+++.+.. ++.++.+.
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-------kdIeElI~ 55 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-------VNIEEAIK 55 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-------CCHHHHHH
Confidence 89999999999999999999999988888732 45566654
No 218
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=74.11 E-value=9 Score=34.48 Aligned_cols=59 Identities=17% Similarity=0.122 Sum_probs=43.0
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHh---cC-----CCCCccCHHHHHHHHH
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTF---TN-----TNARKIGPKEFIQVFH 178 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~---d~-----~~~g~i~~~ef~~~~~ 178 (283)
+|..|..-.+++|.+..|-.+|++.|...+.-.+++++..+ |. .....++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 56666666679999999999999999877766666655543 32 2235688889988864
No 219
>PF14223 UBN2: gag-polypeptide of LTR copia-type
Probab=74.02 E-value=29 Score=24.74 Aligned_cols=69 Identities=16% Similarity=0.239 Sum_probs=34.7
Q ss_pred cCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHH-HHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 168 IGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNE-LREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 168 i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~e-l~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
-++.+|+..+.. ++..+..-+. .++..+ +..+|..|. ...+.++..+....+ ...+++++++..+.
T Consensus 41 ~sv~~y~~~~~~------i~~~L~~~g~-~i~d~~~v~~iL~~Lp-----~~y~~~~~~i~~~~~-~~~~t~~el~~~L~ 107 (119)
T PF14223_consen 41 ESVDEYISRLKE------IVDELRAIGK-PISDEDLVSKILRSLP-----PSYDTFVTAIRNSKD-LPKMTLEELISRLL 107 (119)
T ss_pred ccHHHHHHHHHH------hhhhhhhcCC-cccchhHHHHHHhcCC-----chhHHHHHHHHhcCC-CCcCCHHHHHHHHH
Confidence 356666655443 2333322222 344444 455666554 334444444433332 13478999988877
Q ss_pred HHH
Q 023338 247 TVK 249 (283)
Q Consensus 247 ~~~ 249 (283)
..+
T Consensus 108 ~~E 110 (119)
T PF14223_consen 108 AEE 110 (119)
T ss_pred HHH
Confidence 543
No 220
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=73.83 E-value=6.8 Score=34.18 Aligned_cols=37 Identities=8% Similarity=0.216 Sum_probs=22.4
Q ss_pred ccCCCCccCHHHHHHHHHhcCccC----------CHHHHHHHHHHhc
Q 023338 125 DRDNSGLIDDKELQGALSSYNQSF----------SLRTVRLLMYTFT 161 (283)
Q Consensus 125 d~d~~g~i~~~el~~~l~~~~~~~----------~~~~~~~l~~~~d 161 (283)
+.|....++..|.+++|..++... +.++++.++..++
T Consensus 135 ~~~~~~~lp~~eR~~lLe~lg~~~v~~~~~~~~~d~~~l~~~l~~~~ 181 (342)
T cd07894 135 KKNTGRPLPVEERRELLEKYGLPTVRLFGEFTADEIEELKEIIRELD 181 (342)
T ss_pred EcCCCCCCCHHHHHHHHHhcCCCCcceEEEEecCCHHHHHHHHHHHH
Confidence 334345677888888888775322 2356666666554
No 221
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=73.81 E-value=24 Score=24.21 Aligned_cols=12 Identities=8% Similarity=0.235 Sum_probs=5.5
Q ss_pred cCHHHHHHHHHH
Q 023338 198 IDSNELREALMS 209 (283)
Q Consensus 198 i~~~el~~~l~~ 209 (283)
++.+++..+|..
T Consensus 40 ~T~~Qv~~il~~ 51 (95)
T PF14771_consen 40 FTCAQVKQILSL 51 (95)
T ss_pred eeHHHHHHHHHH
Confidence 444444444443
No 222
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=73.65 E-value=6.2 Score=35.78 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=10.7
Q ss_pred eeeeeHHHHHHHhcc
Q 023338 265 SATFTYENFMLAVLP 279 (283)
Q Consensus 265 ~i~~~~~~~~~~~~~ 279 (283)
..++||++|++.-+.
T Consensus 419 ~~d~TFe~WW~~Ql~ 433 (445)
T PF13608_consen 419 SFDVTFEDWWDNQLQ 433 (445)
T ss_pred CCCCCHHHHHHHHHH
Confidence 346789999887653
No 223
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.61 E-value=35 Score=25.47 Aligned_cols=58 Identities=14% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHhc--CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 119 ACFQLADRDNSGLIDDKELQGALSSY--NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 119 ~~F~~~d~d~~g~i~~~el~~~l~~~--~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
-+|...+. ||.++..|...+...+ .+.++.+.+..|+.....-+.-.+++..|.+.+.
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 45666665 4677776655443332 3566788888888877665556677888877765
No 224
>PLN03218 maturation of RBCL 1; Provisional
Probab=73.48 E-value=31 Score=35.17 Aligned_cols=12 Identities=17% Similarity=0.540 Sum_probs=4.8
Q ss_pred ccHHHHHHHHHH
Q 023338 236 IEYDNFIECCLT 247 (283)
Q Consensus 236 i~~~eF~~~~~~ 247 (283)
++|.-++..+.+
T Consensus 508 vTynaLI~gy~k 519 (1060)
T PLN03218 508 HTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 225
>TIGR03764 ICE_PFGI_1_parB integrating conjugative element, PFGI_1 class, ParB family protein. Members of this protein family carry the ParB-type nuclease domain and are found in integrating conjugative elements (ICE) in the same class as PFGI-1 of Pseudomonas fluorescens Pf-5.
Probab=73.37 E-value=53 Score=27.38 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=43.4
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCC-----CCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeH
Q 023338 196 GKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGG-----KSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTY 270 (283)
Q Consensus 196 G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d-----~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~ 270 (283)
-.++-+||.+.|..-|+.++...|..+++....-.. -...|....+..++...+....++.++....+ ++|
T Consensus 135 ~~ltq~ela~~lgk~g~~isrs~Isn~lrll~~L~~~i~~~l~~glGr~~~~~L~~L~~~a~~~w~~~~~~~~----~~f 210 (258)
T TIGR03764 135 ESLSQRELARRLSADGYPISQSHISRMGDTVEYLYPAIPNLLYSGLGRPQIEKLLSLRKAAEKIWNRYSSGVE----VDF 210 (258)
T ss_pred CCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHhChHHHHHHHHccCChHHHHHHHHHHHHHHHHHHHHccccC----CCH
Confidence 368888898888887777888777777666541100 00124444455554444444445544443222 345
Q ss_pred HHHHHHhc
Q 023338 271 ENFMLAVL 278 (283)
Q Consensus 271 ~~~~~~~~ 278 (283)
+.+|..++
T Consensus 211 ~~~f~~~~ 218 (258)
T TIGR03764 211 EEVFQEVL 218 (258)
T ss_pred HHHHHHHH
Confidence 55444443
No 226
>PHA03155 hypothetical protein; Provisional
Probab=73.30 E-value=20 Score=25.50 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=43.5
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSNELR 204 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~el~ 204 (283)
..+++||..-|..+. +-...++.-+..--...+..|+-.+=-.++.. ....+.+-..+.++-...++.+|+.
T Consensus 7 ~~tvEeLaaeL~kL~--~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~~~vTk~q~~ 84 (115)
T PHA03155 7 CADVEELEKELQKLK--IENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLLPLVSKNQCM 84 (115)
T ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 357777777777652 22444444443322234455665554444331 1233444455556666677777777
Q ss_pred HHHHHcCCC
Q 023338 205 EALMSLGFA 213 (283)
Q Consensus 205 ~~l~~l~~~ 213 (283)
++|.++.++
T Consensus 85 ~al~~lt~R 93 (115)
T PHA03155 85 EAIADIKYR 93 (115)
T ss_pred HHHhcCeee
Confidence 777776543
No 227
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=73.22 E-value=44 Score=26.38 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=34.1
Q ss_pred hHHHHHHHHccCCCCccCHHH-HHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 116 NIVACFQLADRDNSGLIDDKE-LQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~e-l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
+|+++++. -.+++|+..+ |..++..+...+ ++.++.|++...-+. .|.||+.++.
T Consensus 31 e~k~l~~~---vls~tiS~rd~~g~mf~~i~~s~-~Eile~llk~i~Idp----~fKef~e~ik 86 (220)
T COG4359 31 EWKALKDG---VLSKTISFRDGFGRMFGSIHSSL-EEILEFLLKDIKIDP----GFKEFVEWIK 86 (220)
T ss_pred HHHHHHHH---HhhCceeHHHHHHHHHHhcCCCH-HHHHHHHHhhcccCc----cHHHHHHHHH
Confidence 45555443 2456777654 677777776665 555666666454432 4899999887
No 228
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=73.04 E-value=51 Score=32.45 Aligned_cols=44 Identities=7% Similarity=0.092 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 199 DSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 199 ~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.+.|.++|..+ +...+|++||..+..++. -.++.++|+.++..
T Consensus 206 ~~e~f~~~l~kl---cpR~eie~iF~ki~~~~k--pylT~~ql~dfln~ 249 (1189)
T KOG1265|consen 206 TLEKFYRLLNKL---CPRPEIEEIFRKISGKKK--PYLTKEQLVDFLNK 249 (1189)
T ss_pred cHHHHHHHHHhc---CCchhHHHHHHHhccCCC--ccccHHHHHHHHhh
Confidence 334556666665 345789999999988773 57999999998874
No 229
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=72.90 E-value=27 Score=24.77 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 176 (283)
.||.+++.++|+..|..+....++.+++.+.. ++++|.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHh
Confidence 89999999999999999999999999988854 467776654
No 230
>TIGR02553 SipD_IpaD_SspD type III effector protein IpaD/SipD/SspD. These proteins are found within type III secretion operons and have been shown to be secreted by that system.
Probab=72.83 E-value=59 Score=27.69 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhccCCCC---ccCHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-HHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSG---KIDSNELREALMSLGF--AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT-VKGLTE 253 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G---~i~~~el~~~l~~l~~--~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~-~~~~~~ 253 (283)
+..+..++..++..++| .|+..++..++....- .--+..+..+.+.|..++ =+|+.+++++.. +..+.+
T Consensus 226 l~~i~~m~~sl~~~g~g~~~~~~~A~YQAWqAgFdaq~~~iqsn~Qtl~qKYSqAN-----StFDNLVKVLSstIssl~e 300 (308)
T TIGR02553 226 PTPLIKMRDDLPPLGTGTELEWDNAKYQAWQSGFKAQEENIKNTLQTLTQKYSNAN-----SLFDNLVKVLSSTISSLLE 300 (308)
T ss_pred hHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chHHHHHHHHHHHHHHHHH
Confidence 45566667777655544 4677777777765311 011233555666665544 578888888774 444433
No 231
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=72.74 E-value=65 Score=28.19 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=28.3
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
...++.+||++.|.. .......+++.|....|.---=++-|.||+..+..+
T Consensus 5 ~~~~~LeeLe~kLa~-~d~~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 5 TPNLKLEELEEKLAS-NDNSKDSVMDKISEAQDSILPLRLQFNEFIQTMANI 55 (379)
T ss_pred cCCCcHHHHHHHHhc-CCchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 346778888888873 333223333444443333223356777777776654
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=72.19 E-value=20 Score=33.51 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=47.9
Q ss_pred chhHHHHHHHHccCCCCccCHHHHHHHHHhcC--ccCCHHHHHHHHHHhcCC----CCCccCHHHHHHHHH
Q 023338 114 DPNIVACFQLADRDNSGLIDDKELQGALSSYN--QSFSLRTVRLLMYTFTNT----NARKIGPKEFIQVFH 178 (283)
Q Consensus 114 ~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~--~~~~~~~~~~l~~~~d~~----~~g~i~~~ef~~~~~ 178 (283)
..+|+++|..+..+ +.++.++|..+|...- ...+.+.+..|+..+... ..+.++++.|...+.
T Consensus 23 ~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 23 PVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred cHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 47899999988754 5799999999997753 234567788888877532 235699999988875
No 233
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=71.65 E-value=21 Score=31.61 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 200 SNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
.-.|..+|..+..++++++++.+-..+...-..+....|||-....
T Consensus 287 ~~~Ll~~L~~l~~~l~~~~~~~l~s~~~~~v~d~~e~gWEE~~~aa 332 (377)
T PF14728_consen 287 ATQLLILLLKLRFNLNEDDVELLESVFSPSVQDSTEQGWEESVDAA 332 (377)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHcCCCcCcCCcCChHHHHHHH
Confidence 3344555555666777777776666665432213468899876653
No 234
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=71.53 E-value=31 Score=23.99 Aligned_cols=77 Identities=5% Similarity=0.029 Sum_probs=40.7
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
.|...+.+.+.+.+| +++.+++.+......+. .+. ...+++.+-.-....-+...|...|..+
T Consensus 17 ~~~~~~wK~faR~lg--lse~~Id~I~~~~~~d~-----~Eq----------~~qmL~~W~~~~G~~a~~~~Li~aLr~~ 79 (97)
T cd08316 17 VMTLKDVKKFVRKSG--LSEPKIDEIKLDNPQDT-----AEQ----------KVQLLRAWYQSHGKTGAYRTLIKTLRKA 79 (97)
T ss_pred HcCHHHHHHHHHHcC--CCHHHHHHHHHcCCCCh-----HHH----------HHHHHHHHHHHhCCCchHHHHHHHHHHc
Confidence 466677777777775 56777777665432221 111 1222222211111122346667778877
Q ss_pred CCCCCHHHHHHHHH
Q 023338 211 GFAVSPVVLDLLVT 224 (283)
Q Consensus 211 ~~~~~~~~i~~l~~ 224 (283)
+.+...+.|..++.
T Consensus 80 ~l~~~Ad~I~~~l~ 93 (97)
T cd08316 80 KLCTKADKIQDIIE 93 (97)
T ss_pred cchhHHHHHHHHHH
Confidence 77766666665544
No 235
>PLN02222 phosphoinositide phospholipase C 2
Probab=71.41 E-value=18 Score=34.01 Aligned_cols=62 Identities=10% Similarity=0.182 Sum_probs=47.4
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCc--cCCHHHHHHHHHHhcC-CCCCccCHHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQ--SFSLRTVRLLMYTFTN-TNARKIGPKEFIQVFH 178 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~--~~~~~~~~~l~~~~d~-~~~g~i~~~ef~~~~~ 178 (283)
.+|+.+|..+.. ++.++.++|..+|...-. ..+.+.+..|+..+.. ...+.++++.|...+.
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 689999999864 469999999999987532 3467788888887532 2345699999998875
No 236
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=71.38 E-value=15 Score=23.74 Aligned_cols=47 Identities=21% Similarity=0.224 Sum_probs=30.3
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
++.+++.++++..+..++.+++..+++.-+..+- -.++.+.+..++.
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y--~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGY--KECSDQLLRNFLN 60 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccc--cccChHHHHHHHH
Confidence 4445677888877888888888888777544432 3455555555544
No 237
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=71.38 E-value=28 Score=24.59 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=38.1
Q ss_pred HHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 187 FEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 187 f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
+..++.-+. .|+.+.|+.+|...|..+.+..++.++..++. ++.+|.+.-
T Consensus 7 ~llL~~agk-ei~e~~l~~vl~aaGveve~~r~k~lvaaLeg-------~~idE~i~~ 56 (109)
T COG2058 7 YLLLHLAGK-EITEDNLKSVLEAAGVEVEEARAKALVAALEG-------VDIDEVIKN 56 (109)
T ss_pred HHHHHHccC-cCCHHHHHHHHHHcCCCccHHHHHHHHHHhcC-------CCHHHHHHH
Confidence 344444444 89999999999999999999999999988842 466766554
No 238
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=71.36 E-value=27 Score=25.04 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=37.6
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIE 243 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~ 243 (283)
+|.+.-.-++..++.++|+.+|+..|..+....+..+++.+.. .+.++.+.
T Consensus 6 Ayll~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-------K~i~eLIa 56 (113)
T PLN00138 6 AYLLAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-------KDITELIA 56 (113)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-------CCHHHHHH
Confidence 3444444556679999999999999999888888888888833 44456554
No 239
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=71.19 E-value=7.5 Score=32.78 Aligned_cols=98 Identities=15% Similarity=0.179 Sum_probs=63.0
Q ss_pred CchhHHHHHHHH--ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHHHHHHHHH
Q 023338 113 TDPNIVACFQLA--DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQNWRAMFEK 189 (283)
Q Consensus 113 ~~~~l~~~F~~~--d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~~~~~f~~ 189 (283)
.+++|..+...+ |.|+...+-.+||......+.-......++-|.+.+-.+=+|.|-+.|....+.+ ...+.++|..
T Consensus 23 ~~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~l 102 (323)
T cd01047 23 NREEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRL 102 (323)
T ss_pred hHHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHH
Confidence 346788777754 6666777777777775554433444555666677777777888877777766643 3567888887
Q ss_pred hccCC---CCccCHHHHHHHHHHcCCCCC
Q 023338 190 VDRDR---SGKIDSNELREALMSLGFAVS 215 (283)
Q Consensus 190 ~D~~~---~G~i~~~el~~~l~~l~~~~~ 215 (283)
.-+|. -|.| .+.|+..+..++
T Consensus 103 MaRDEARHAGFl-----Nkam~df~l~lD 126 (323)
T cd01047 103 MARDEARHAGFL-----NKALSDFNLALD 126 (323)
T ss_pred HhhhHHHHhhhH-----HHHHHHcCcccc
Confidence 75553 2444 566666555443
No 240
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=71.08 E-value=7.9 Score=36.52 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=14.3
Q ss_pred ccCCCCccCHHHHHHHHHHcC
Q 023338 191 DRDRSGKIDSNELREALMSLG 211 (283)
Q Consensus 191 D~~~~G~i~~~el~~~l~~l~ 211 (283)
|.|-++.|..+||+++...+-
T Consensus 293 d~dvs~~i~ReEfEel~~plL 313 (727)
T KOG0103|consen 293 DKDVSSKIKREEFEELSAPLL 313 (727)
T ss_pred cchhhhhccHHHHHHHHHHHH
Confidence 566677777777777766553
No 241
>PLN03218 maturation of RBCL 1; Provisional
Probab=70.96 E-value=36 Score=34.72 Aligned_cols=21 Identities=14% Similarity=0.455 Sum_probs=9.5
Q ss_pred cccHHHHHHHHHHHHHHHHHh
Q 023338 235 AIEYDNFIECCLTVKGLTEKF 255 (283)
Q Consensus 235 ~i~~~eF~~~~~~~~~~~~~f 255 (283)
.++|..++..+.....+.+++
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~ 562 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAF 562 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 345555555555433333333
No 242
>PLN02230 phosphoinositide phospholipase C 4
Probab=70.60 E-value=23 Score=33.42 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=46.9
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCc---cCCHHHHHHHHHHhc-------CCCCCccCHHHHHHHHH
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQ---SFSLRTVRLLMYTFT-------NTNARKIGPKEFIQVFH 178 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d-------~~~~g~i~~~ef~~~~~ 178 (283)
...+++.+|..+..++ +.++.++|.++|...-. ..+.+.+..++..+- ....+.++++.|...+.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 3478999999996554 79999999999987542 345666777665432 11234699999998775
No 243
>PLN03077 Protein ECB2; Provisional
Probab=70.58 E-value=75 Score=31.55 Aligned_cols=62 Identities=10% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.++++.|+.-....++..-+...+...| .-++...+++.+...+-.-..++|.-.+..+.+
T Consensus 540 ~~~A~~~f~~~~~d~~s~n~lI~~~~~~G---~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 601 (857)
T PLN03077 540 MNYAWNQFNSHEKDVVSWNILLTGYVAHG---KGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601 (857)
T ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence 34444444433333444444444333333 334455555554433211235666666555553
No 244
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=69.86 E-value=19 Score=32.50 Aligned_cols=38 Identities=26% Similarity=0.302 Sum_probs=18.1
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLV 223 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~ 223 (283)
+|..|-...++.++.-.|..+|+++|++-++--++.++
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mM 128 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMM 128 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHH
Confidence 34444333445555555555555555544444444333
No 245
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=69.64 E-value=32 Score=23.30 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=22.2
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCC
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFA 213 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~ 213 (283)
++++....+..+.-+|+.+++..+|+..|..
T Consensus 51 ~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 51 IRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 4555555566777789999998888877643
No 246
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=69.47 E-value=3.3 Score=32.42 Aligned_cols=53 Identities=11% Similarity=0.315 Sum_probs=38.3
Q ss_pred HHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 175 QVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 175 ~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
..+.+.+.++++|..||.+.=-.++.+++++++..-+.-.+...|+.++..+.
T Consensus 43 ~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi~NA~ 95 (179)
T PF03352_consen 43 TILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVINNAR 95 (179)
T ss_dssp HHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHHHHHH
Confidence 34455678899999999988888899999999987666667777777776653
No 247
>PLN02223 phosphoinositide phospholipase C
Probab=68.56 E-value=26 Score=32.52 Aligned_cols=66 Identities=8% Similarity=0.018 Sum_probs=38.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHH---HHc-C-CCCCHHHHHHHHHHHhhCCC------CCCcccHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREAL---MSL-G-FAVSPVVLDLLVTKFDKTGG------KSKAIEYDNFIECCLT 247 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l---~~l-~-~~~~~~~i~~l~~~~d~~~d------~~g~i~~~eF~~~~~~ 247 (283)
++++++|..+ .+++|.++.+.|.++| ... + ...+.++++.++..+..... ....|+++.|.+++..
T Consensus 16 ~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 3556666666 2555677777777766 332 1 23455566666655432210 1245899999988764
No 248
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=68.47 E-value=14 Score=31.68 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=37.0
Q ss_pred ccCCHHHHHHHHHHhcCC--CCCccCHHHHHHHHHhH-HHHHHHHHHh-----ccCCCCccCHHHHHHHHHHcCCCCCHH
Q 023338 146 QSFSLRTVRLLMYTFTNT--NARKIGPKEFIQVFHSL-QNWRAMFEKV-----DRDRSGKIDSNELREALMSLGFAVSPV 217 (283)
Q Consensus 146 ~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~-~~~~~~f~~~-----D~~~~G~i~~~el~~~l~~l~~~~~~~ 217 (283)
.....++++.|++.+..| ..-.+-=+||...+..+ .+++.+|..| -.+=+|+|-..|+.+-+++ .+.
T Consensus 36 ~s~~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~-----~nP 110 (357)
T PLN02508 36 KNLDMAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKK-----TNP 110 (357)
T ss_pred CchhHHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhccc-----CCh
Confidence 344455666666665433 22223333443322222 3334444332 3344566655555555542 234
Q ss_pred HHHHHHHHHhhCC
Q 023338 218 VLDLLVTKFDKTG 230 (283)
Q Consensus 218 ~i~~l~~~~d~~~ 230 (283)
+|.+++..+..|+
T Consensus 111 ~lae~F~lMaRDE 123 (357)
T PLN02508 111 VVAEIFTLMSRDE 123 (357)
T ss_pred HHHHHHHHhCchh
Confidence 5555666555544
No 249
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=68.45 E-value=35 Score=28.28 Aligned_cols=45 Identities=9% Similarity=0.213 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
++++..-|-.|=.+....|+.+++.+.-+.. +.|..|+..|+...
T Consensus 145 mKel~~kyP~wL~~n~~~l~~ed~~rY~~Q~------~~v~~I~~~fE~~~ 189 (248)
T PF04614_consen 145 MKELRDKYPEWLEENKSKLSAEDYERYEKQY------ELVKEICAIFEKPP 189 (248)
T ss_dssp HHHHHHHHHHHHHHHCCCS-HHHHHHHHHHH------HHHHHHHHHHHH--
T ss_pred HHHHHHHhHHHHHhCcCcCCHHHHHHHHHHH------HHHHHHHHHHcCCC
Confidence 3556666666544444588999888887653 56888888887765
No 250
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=68.23 E-value=31 Score=23.70 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=22.8
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCC
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFA 213 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~ 213 (283)
..++....+..+.-+|..+++...++.++..
T Consensus 57 ~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~ 87 (91)
T COG2036 57 AEDAVELAEHAKRKTVKAEDIKLALKRLGRR 87 (91)
T ss_pred HHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence 3555666677888888888888888876543
No 251
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=68.06 E-value=16 Score=23.75 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHc----CCCCCHHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSL----GFAVSPVVLDLLVTKF 226 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l----~~~~~~~~i~~l~~~~ 226 (283)
+.+..+.+.++....-.|-..+++.++..+ |...+++.++.+|+.|
T Consensus 23 ~~l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 23 EHLEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 344444444444333334444555555543 5566677777777654
No 252
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=68.03 E-value=14 Score=24.84 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcCC-CCCccCHHHHHHHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTNT-NARKIGPKEFIQVF 177 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~-~~g~i~~~ef~~~~ 177 (283)
-+.++|..+|. |+.++.+.+...+..++.+ --+.++.+||+.++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 35788888886 7788899998888887543 33567888887664
No 253
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=67.84 E-value=23 Score=20.91 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=25.7
Q ss_pred HHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHH
Q 023338 171 KEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVL 219 (283)
Q Consensus 171 ~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i 219 (283)
..|+..+.....++..++.. -+.+|+..+.+..|+.++.+++
T Consensus 7 ~~Fl~~~~~d~~l~~~l~~~-------~~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 7 KAFLEKVKSDPELREQLKAC-------QNPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred HHHHHHHhcCHHHHHHHHhc-------CCHHHHHHHHHHcCCCCCHHHh
Confidence 34444444444555555442 2667788888888888887765
No 254
>PRK03968 DNA primase large subunit; Validated
Probab=67.58 E-value=30 Score=30.27 Aligned_cols=44 Identities=14% Similarity=0.079 Sum_probs=27.5
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
...|..+++..+.+.++..+..+++.+++-. ..|.+.+|+.++.
T Consensus 119 ~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~------y~i~~~df~~l~g 162 (399)
T PRK03968 119 AIEIPEKDRKILERVRGRELPPEELEDLLPE------YKIKWKDLLDLIG 162 (399)
T ss_pred cccccchhhhhhhhhcccccCHHHHHHHhhh------ccccHHHHHHhcC
Confidence 3445556666666777777777777666543 3356777766544
No 255
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=67.20 E-value=43 Score=23.91 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 199 DSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 199 ~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
+..|++.++..+..++++++++.|+..+
T Consensus 86 ~~~El~~ii~~~~~r~~ee~l~~iL~~v 113 (117)
T PF03874_consen 86 TAVELRAIIESLESRFSEEDLEEILDLV 113 (117)
T ss_dssp SHHHHHHHSTTGTTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3444444444444444555555554443
No 256
>PLN03077 Protein ECB2; Provisional
Probab=66.83 E-value=67 Score=31.90 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=4.9
Q ss_pred cCHHHHHHHHH
Q 023338 168 IGPKEFIQVFH 178 (283)
Q Consensus 168 i~~~ef~~~~~ 178 (283)
++|..++..+.
T Consensus 355 ~s~n~li~~~~ 365 (857)
T PLN03077 355 VSWTAMISGYE 365 (857)
T ss_pred eeHHHHHHHHH
Confidence 44444444443
No 257
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=66.54 E-value=22 Score=25.01 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=33.5
Q ss_pred CCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 023338 127 DNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 127 d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 176 (283)
|.+..||.+++.++|+..+......++..+++.+.. .+++|++..
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa~ 57 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLSN 57 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhhc
Confidence 345678999999999999988888888887777743 345555533
No 258
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.46 E-value=25 Score=22.68 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
|+.|++.-+| +-.|+.+-++..+..+|.+.++..++.+++...
T Consensus 26 rk~~~k~lk~-NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 26 RKQMKKQLKD-NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred HHHHHHHHhh-CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4455544443 577999999999999999999999998887653
No 259
>PTZ00015 histone H4; Provisional
Probab=66.21 E-value=43 Score=23.54 Aligned_cols=72 Identities=17% Similarity=0.058 Sum_probs=39.9
Q ss_pred cCCCCccCHHHHHHHHHhcCcc-CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHH
Q 023338 126 RDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELR 204 (283)
Q Consensus 126 ~d~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~ 204 (283)
+|....|+..-++.+++..|.. ++....+++-.. +++|+.. -++++....+..+.-+|+.+++.
T Consensus 25 r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~v----------le~~l~~-----I~rdav~~aeHA~RKTVt~~DV~ 89 (102)
T PTZ00015 25 RDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGV----------LKAFLEN-----VVRDSTAYTEYARRKTVTAMDVV 89 (102)
T ss_pred hhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHH----------HHHHHHH-----HHHHHHHHHHhcCCCcccHHHHH
Confidence 4444557777777777766533 222222222111 2223222 24455555566677789999998
Q ss_pred HHHHHcCC
Q 023338 205 EALMSLGF 212 (283)
Q Consensus 205 ~~l~~l~~ 212 (283)
.+|+..+.
T Consensus 90 ~AlKr~g~ 97 (102)
T PTZ00015 90 YALKRQGR 97 (102)
T ss_pred HHHHhcCC
Confidence 88887654
No 260
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=66.18 E-value=34 Score=31.69 Aligned_cols=17 Identities=12% Similarity=0.454 Sum_probs=10.7
Q ss_pred HHHHHHHHHHhccCCCC
Q 023338 180 LQNWRAMFEKVDRDRSG 196 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G 196 (283)
++.+..+|+.+|.+...
T Consensus 196 i~~~~~ifkIve~EE~~ 212 (742)
T COG5173 196 IEAMDKIFKIVEKEEAR 212 (742)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 35566677777766543
No 261
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.95 E-value=4.5 Score=35.08 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=42.1
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSP-VVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~-~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
+.++++|+.+|..++|.|+.+-++.++..++...++ +.|..+-..++... -+.|-.++|...
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~--~~iil~~d~lg~ 371 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPES--LGIILLEDFLGE 371 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhh--cceEEecccccc
Confidence 579999999999999999999999999988744433 33333333344443 255555555443
No 262
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=65.91 E-value=25 Score=29.56 Aligned_cols=23 Identities=4% Similarity=-0.020 Sum_probs=11.3
Q ss_pred HHHHhccCCCCccCHHHHHHHHH
Q 023338 186 MFEKVDRDRSGKIDSNELREALM 208 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~ 208 (283)
+.+.|+..+....+.+++.+.+.
T Consensus 97 a~~lf~~~k~~~~~l~~~~~~~~ 119 (267)
T PRK09430 97 AQQAFREGKEPDFPLREKLRQFR 119 (267)
T ss_pred HHHHHHHhcccCCCHHHHHHHHH
Confidence 44444444444455555554443
No 263
>PRK00523 hypothetical protein; Provisional
Probab=65.83 E-value=24 Score=22.91 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=33.5
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
|+.|+..-++ +--|+.+-++..+..+|.+.++..++.+++.+.
T Consensus 27 rk~~~k~l~~-NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 27 KKMFKKQIRE-NPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred HHHHHHHHHH-CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3444443332 577999999999999999999999999988763
No 264
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=65.60 E-value=9.7 Score=32.65 Aligned_cols=34 Identities=21% Similarity=0.172 Sum_probs=18.9
Q ss_pred cCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 192 RDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
.+=+|+|-..|+.+-++. .+.+|.+++..+..|+
T Consensus 94 aEFSGflLYKEl~rrlk~-----~nP~lae~F~lMaRDE 127 (355)
T PRK13654 94 AEFSGFLLYKELSRRLKD-----RNPLLAELFQLMARDE 127 (355)
T ss_pred hhhhhHHHHHHHHHhccc-----cCcHHHHHHHHHhhhH
Confidence 344666666666665542 2345666666665554
No 265
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=65.60 E-value=49 Score=32.74 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=15.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
++.|+.+.+..++.. ...+.|++++..+
T Consensus 231 ~~~IT~e~V~allg~----~~~~~I~~lidAL 258 (824)
T PRK07764 231 PEGVTYERAVALLGV----TDSALIDEAVDAL 258 (824)
T ss_pred CCCCCHHHHHHHhcC----CCHHHHHHHHHHH
Confidence 456888777776643 2344444444443
No 266
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=65.36 E-value=46 Score=28.38 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=10.7
Q ss_pred cccHHHHHHHHHHHHHHHHHhh
Q 023338 235 AIEYDNFIECCLTVKGLTEKFK 256 (283)
Q Consensus 235 ~i~~~eF~~~~~~~~~~~~~f~ 256 (283)
.-|..|+-.+-+.|..|+...+
T Consensus 268 lPTr~evd~l~k~l~eLrre~r 289 (293)
T PF09712_consen 268 LPTRSEVDELYKRLHELRREVR 289 (293)
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444433
No 267
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=64.97 E-value=16 Score=31.55 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHccCCCCccCHHHHHHHHHhcCccC-----------CHHHHHHHHHHhcCCC
Q 023338 121 FQLADRDNSGLIDDKELQGALSSYNQSF-----------SLRTVRLLMYTFTNTN 164 (283)
Q Consensus 121 F~~~d~d~~g~i~~~el~~~l~~~~~~~-----------~~~~~~~l~~~~d~~~ 164 (283)
|...+++....++.+|-.+++...|... ..+++.+|+..++.++
T Consensus 171 FDire~~tgr~Lp~eer~~l~ekYgl~~V~~fg~~~~~e~~eei~eIve~L~keG 225 (382)
T COG1423 171 FDIREKNTGRPLPVEERLELAEKYGLPHVEIFGEFPADEAGEEIYEIVERLNKEG 225 (382)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHcCCCceEEeeeechhHhHHHHHHHHHHHhhcC
Confidence 3334455666788888777766654211 1146677777776543
No 268
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=64.61 E-value=49 Score=32.22 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=31.4
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcC-----ccCCHHHHHHHHHHhcCCC
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-----QSFSLRTVRLLMYTFTNTN 164 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~-----~~~~~~~~~~l~~~~d~~~ 164 (283)
..++.+|++|.+...-.--.|=.+||-.+-=.-| -.+=+..+..|++.+|.-.
T Consensus 748 qSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 748 QSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLS 805 (953)
T ss_pred chHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhccc
Confidence 3456789999887665555665566555432222 1223556677777777543
No 269
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=64.35 E-value=9.3 Score=35.01 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHhccCCC
Q 023338 179 SLQNWRAMFEKVDRDRS 195 (283)
Q Consensus 179 ~~~~~~~~f~~~D~~~~ 195 (283)
++.+++.+|+.+=.|..
T Consensus 298 KLHCvRqAf~~~l~d~~ 314 (514)
T PF10265_consen 298 KLHCVRQAFQVLLQDES 314 (514)
T ss_pred HHHHHHHHHHHHhcCch
Confidence 35678888888655443
No 270
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=64.13 E-value=21 Score=34.58 Aligned_cols=65 Identities=23% Similarity=0.410 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
.++..+-.+|.+.-..|+..+++.+|..+.+.++. .+.+...+..++...+.|+|+.|..+...+
T Consensus 145 wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~--~kfl~e~~ted~~~k~dlsf~~f~~ly~~l 209 (1267)
T KOG1264|consen 145 WLRKQIYSVDQTRENSISARDLKTILPQVNFKVSS--AKFLKEKFTEDGARKDDLSFEQFHLLYKKL 209 (1267)
T ss_pred HHHhhheeccchhhhheeHHhhhcccccceEEech--HHHHHHHHhHhhhccccccHHHHHHHHHHH
Confidence 34555556677777789999999999887766542 233334444443334679999998887653
No 271
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=64.13 E-value=62 Score=24.64 Aligned_cols=47 Identities=13% Similarity=0.040 Sum_probs=24.8
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
..+++||.+++...- .++++++++...+...-. .|.++..+..+.+.
T Consensus 86 qcs~~DLsdii~i~f--~~deel~~~~e~i~~~v~-~Gn~Sl~~lsr~l~ 132 (160)
T PF09824_consen 86 QCSMEDLSDIIYIAF--MSDEELRDYVEKIEKEVE-AGNTSLSDLSRKLG 132 (160)
T ss_pred EeeHHHHHHHHheee--cCHHHHHHHHHHHHHHHH-cCCCcHHHHHHHhC
Confidence 566777777775421 345555555544432211 25566666555544
No 272
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=63.85 E-value=9.8 Score=32.52 Aligned_cols=81 Identities=17% Similarity=0.228 Sum_probs=36.7
Q ss_pred CccCCHHHHHHHHHHhcCC--CCCccCHHHHHHHHHhH-HHHHHHHHHh-----ccCCCCccCHHHHHHHHHHcCCCCCH
Q 023338 145 NQSFSLRTVRLLMYTFTNT--NARKIGPKEFIQVFHSL-QNWRAMFEKV-----DRDRSGKIDSNELREALMSLGFAVSP 216 (283)
Q Consensus 145 ~~~~~~~~~~~l~~~~d~~--~~g~i~~~ef~~~~~~~-~~~~~~f~~~-----D~~~~G~i~~~el~~~l~~l~~~~~~ 216 (283)
......++++.|++.+..| ..-.+-=+||...+..+ .+++.+|..| -.+=+|+|-..|+.+-+++ .+
T Consensus 35 dis~~~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~-----~n 109 (351)
T CHL00185 35 DISSNIEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKD-----KN 109 (351)
T ss_pred CCchhHHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcc-----CC
Confidence 3344455555555554332 22222233443333222 2333333332 3344666666666665543 23
Q ss_pred HHHHHHHHHHhhCC
Q 023338 217 VVLDLLVTKFDKTG 230 (283)
Q Consensus 217 ~~i~~l~~~~d~~~ 230 (283)
.+|.+++..+..|+
T Consensus 110 P~lae~F~lMaRDE 123 (351)
T CHL00185 110 PLLAEGFLLMSRDE 123 (351)
T ss_pred cHHHHHHHHHhhhh
Confidence 44556666655554
No 273
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=63.73 E-value=38 Score=25.88 Aligned_cols=22 Identities=18% Similarity=0.094 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 023338 239 DNFIECCLTVKGLTEKFKERDT 260 (283)
Q Consensus 239 ~eF~~~~~~~~~~~~~f~~~d~ 260 (283)
+|-..++.-+++|+..-+....
T Consensus 122 ~E~~~WmvGVKRLI~~~r~~~~ 143 (157)
T PF07304_consen 122 DECGNWMVGVKRLIAMARNLPP 143 (157)
T ss_dssp HHHTTTHHHHHHHHHHHHHHH-
T ss_pred HHhhhHHHHHHHHHHHHHhcCc
Confidence 4555555566666665554443
No 274
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=63.68 E-value=21 Score=31.40 Aligned_cols=43 Identities=7% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHccCCCCccCHHHHHHHHHhcCccC-------CHH----HHHHHHHHhcCC
Q 023338 121 FQLADRDNSGLIDDKELQGALSSYNQSF-------SLR----TVRLLMYTFTNT 163 (283)
Q Consensus 121 F~~~d~d~~g~i~~~el~~~l~~~~~~~-------~~~----~~~~l~~~~d~~ 163 (283)
|..+|++....++++|..+++..++... +.+ .+++++..++..
T Consensus 163 FDI~d~~t~~~L~~~er~~l~e~yglp~Vpvlg~~~~~~~~~~~~eii~~L~~~ 216 (374)
T TIGR01209 163 FDIREGKTNRSLPVEERLELAEKYGLPHVEILGVYTADEAVEEIYEIIERLNKE 216 (374)
T ss_pred EEEEECCCCccCCHHHHHHHHHHCCCCccceeeEEcHHHHHHHHHHHHHHhhhc
Confidence 4444555678899999999888765332 222 445666666543
No 275
>PTZ00473 Plasmodium Vir superfamily; Provisional
Probab=63.56 E-value=1e+02 Score=27.42 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=27.9
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhc
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKER 258 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~ 258 (283)
+...|++|. ...=+..|++.|++-.-+...-.+|+.++.. ++.+.+...|..++...++|+.+
T Consensus 120 il~~f~kfk---~~~~~~~e~e~ImKL~yFteNig~Ik~lm~~----------~~~~~y~s~C~fvn~CidIYrk~ 182 (420)
T PTZ00473 120 ILKNFNKFK---KLYENNYELEDIMKLFYFTENVGDIKSLMGA----------PDNEHYASSCKFVNDCLDIYRKY 182 (420)
T ss_pred hhhhHhhcc---cccccchhHHHHHHHHHHHhhhHHHHHHhcC----------CcchhHHHHHHHHHHHHHHHHHH
Confidence 344444443 3344445677776643332232334443331 22244444444444444555443
No 276
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=63.53 E-value=31 Score=31.30 Aligned_cols=72 Identities=13% Similarity=0.010 Sum_probs=35.6
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh----HHHHHHHHHHhcc
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS----LQNWRAMFEKVDR 192 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~----~~~~~~~f~~~D~ 192 (283)
+|..+-+.....|+..+|..++..++.....++-...|..-+...+| +++.+|+..+.. ...++..|..||.
T Consensus 490 ~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~g-v~yl~v~~~i~sel~D~d~v~~~~~~f~d 565 (612)
T COG5069 490 LFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSG-VFYLDVLKGIHSELVDYDLVTRGFTEFDD 565 (612)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCcccccc-chHHHHHHHHhhhhcChhhhhhhHHHHHH
Confidence 45555555555677777777777776655544443333322222222 444454444332 2344555555543
No 277
>PHA01351 putative minor structural protein
Probab=63.39 E-value=1.5e+02 Score=28.65 Aligned_cols=27 Identities=26% Similarity=0.545 Sum_probs=19.8
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTK 225 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~ 225 (283)
.||..++++-|+.+++ ++..+..++.+
T Consensus 544 ~IS~QD~EkELKkLg~--s~alIqaiI~E 570 (1070)
T PHA01351 544 LISPQDLEKDLKHLGF--DSAIISALIYE 570 (1070)
T ss_pred cCCHHHHHHHHHHcCC--CHHHHHHHHHH
Confidence 8899999999999874 55555555544
No 278
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=63.39 E-value=13 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCcccHHHHHHHHHHHHHHHHHh
Q 023338 233 SKAIEYDNFIECCLTVKGLTEKF 255 (283)
Q Consensus 233 ~g~i~~~eF~~~~~~~~~~~~~f 255 (283)
.++|++++++.+..++..+.+..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~n 24 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESN 24 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHc
Confidence 36788999988888776665544
No 279
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=63.20 E-value=18 Score=21.03 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHHhc-c-CCCCccCHHHHHHHHHH
Q 023338 181 QNWRAMFEKVD-R-DRSGKIDSNELREALMS 209 (283)
Q Consensus 181 ~~~~~~f~~~D-~-~~~G~i~~~el~~~l~~ 209 (283)
..+..+|..|- + .....++.+||+++|..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 44556666653 1 22456777777777653
No 280
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.01 E-value=29 Score=24.44 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=36.1
Q ss_pred CccCHHHHHHHHHhcC---ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCc-c---CHHH
Q 023338 130 GLIDDKELQGALSSYN---QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGK-I---DSNE 202 (283)
Q Consensus 130 g~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~-i---~~~e 202 (283)
..|+.-|+++.|..+. .....+.+...++.+.. +++|..+++.++.++. +-++.. + -.+|
T Consensus 22 ~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRR-------vND~a~AVR~lE~iK~------K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 22 PDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRR-------VNDFALAVRILEGIKD------KCGNKKEIYPYILQE 88 (108)
T ss_dssp TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHH-------TT-HHHHHHHHHHHHH------HTTT-TTHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-------hhhHHHHHHHHHHHHH------HccChHHHHHHHHHH
Confidence 4678889999998753 34466777777776654 3456666555444432 111111 1 1356
Q ss_pred HHHHHHHcCCCC
Q 023338 203 LREALMSLGFAV 214 (283)
Q Consensus 203 l~~~l~~l~~~~ 214 (283)
++-+|..||...
T Consensus 89 lkPtl~ELGI~t 100 (108)
T PF02284_consen 89 LKPTLEELGIPT 100 (108)
T ss_dssp HHHHHHHHT---
T ss_pred HhhHHHHhCCCC
Confidence 666677776543
No 281
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=62.98 E-value=13 Score=31.50 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=19.8
Q ss_pred cCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 192 RDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
.+=+|+|-..|+.+-+++ .+.+|.+++..+..|+
T Consensus 74 aEFSGflLYKEl~rrlk~-----~nP~lae~F~lMaRDE 107 (323)
T cd01047 74 SEFSGFLLYKELGRRLKN-----TNPVVAELFRLMARDE 107 (323)
T ss_pred hhhhhHHHHHHHHHHccc-----CCcHHHHHHHHHhhhH
Confidence 344676666666666543 2345666666665554
No 282
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=62.93 E-value=57 Score=30.06 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=35.6
Q ss_pred HHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhc
Q 023338 137 LQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVD 191 (283)
Q Consensus 137 l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D 191 (283)
+-+.+..++..-+.++-...++.|.. +++||..+...++++..-|..+|
T Consensus 487 tPdYllqY~aI~S~eqr~~Yk~dF~~------eY~EYreLharve~vs~rF~~Le 535 (604)
T KOG4796|consen 487 TPDYLLQYGAISSLEQRQRYKKDFEA------EYDEYRELHARVETVSRRFRQLE 535 (604)
T ss_pred CcchhhhccccccHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555567777777777765 48999999999888888888775
No 283
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.22 E-value=31 Score=21.91 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=29.4
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
+--|+.+-++..+..+|...++..++.+++.+.
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 567999999999999999999999999988764
No 284
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=62.17 E-value=76 Score=29.74 Aligned_cols=7 Identities=14% Similarity=0.643 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 023338 171 KEFIQVF 177 (283)
Q Consensus 171 ~ef~~~~ 177 (283)
.|.+.++
T Consensus 538 ~~~~~~~ 544 (562)
T TIGR01628 538 SELLHLL 544 (562)
T ss_pred HHHHHHh
Confidence 3333333
No 285
>KOG3557 consensus Epidermal growth factor receptor kinase substrate [Signal transduction mechanisms]
Probab=61.95 E-value=18 Score=33.91 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=11.7
Q ss_pred CCcccH-------HHHHHHHHHHHHH
Q 023338 233 SKAIEY-------DNFIECCLTVKGL 251 (283)
Q Consensus 233 ~g~i~~-------~eF~~~~~~~~~~ 251 (283)
+|.|+. .||+.++.+++..
T Consensus 313 eG~LTlRarpP~e~EfvD~fqK~Kls 338 (721)
T KOG3557|consen 313 EGLLTLRARPPSEAEFVDCFQKIKLS 338 (721)
T ss_pred CceeEeecCCCchHHHHHHHHHHHHH
Confidence 466666 6676666665533
No 286
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=61.74 E-value=30 Score=20.25 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=26.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 200 SNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
.+|+...|.+||+ +..+++.+++.+.. . ..++.++.++.
T Consensus 3 ~~d~~~AL~~LGy--~~~e~~~av~~~~~-~---~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLGY--SKAEAQKAVSKLLE-K---PGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTTS---HHHHHHHHHHHHH-S---TTS-HHHHHHH
T ss_pred HHHHHHHHHHcCC--CHHHHHHHHHHhhc-C---CCCCHHHHHHH
Confidence 3577888888885 67889999988876 2 24666776554
No 287
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=61.33 E-value=19 Score=27.05 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=34.1
Q ss_pred hhHHHHHHHHccCCCCc-----cCHHHHHHHHHhc----CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 115 PNIVACFQLADRDNSGL-----IDDKELQGALSSY----NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~-----i~~~el~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
..+++.|+.|...++.. ++-..+.++++.. +..++..++...|+.+....-+.|+|++|...+..
T Consensus 12 a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~e 85 (180)
T KOG4070|consen 12 AGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEE 85 (180)
T ss_pred hhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHH
Confidence 34666676665544332 4444455555432 23334444455555555445556777777665543
No 288
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=60.96 E-value=20 Score=34.27 Aligned_cols=28 Identities=32% Similarity=0.647 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
.+++..|..+|. .+|.++.+|+.+++..
T Consensus 18 ~~l~~~f~~~~~-~~~~~~~~~~~~~~~~ 45 (646)
T KOG0039|consen 18 DKLQTFFDMYDK-GDGKLTEEEVRELIMS 45 (646)
T ss_pred HHHHHHHHHHhh-hcCCccHHHHHHHHHH
Confidence 455556666665 6666666666666554
No 289
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=60.33 E-value=9.5 Score=32.40 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=18.5
Q ss_pred cCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 192 RDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
.+=+|+|-..|+.+-+++ .+-.|.+++..+..|+
T Consensus 84 aEFSGflLYKEl~rrlk~-----~~P~lae~F~~MaRDE 117 (337)
T TIGR02029 84 SEFSGFLLYKELSRRLKN-----RDPVVAELFQLMARDE 117 (337)
T ss_pred hhhhhhHHHHHHHHhcCC-----CChHHHHHHHHHhhhh
Confidence 344666666666655543 3344566666665554
No 290
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=60.29 E-value=27 Score=33.51 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=36.2
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCC
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNAR 166 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g 166 (283)
+.=+++.||..++|.|.+-+|+-.+..+.....++....||+.+...++-
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~sq 521 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTSQ 521 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchhh
Confidence 44456678888888888888888777777666777777888777665543
No 291
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=60.21 E-value=21 Score=27.91 Aligned_cols=43 Identities=12% Similarity=0.049 Sum_probs=27.7
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLM 157 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~ 157 (283)
+.+|++|..||.+.--..+.+++.+++..-+...+...++.++
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi 95 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATI 95 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHH
Confidence 4577777777777767777777777776655444444444333
No 292
>PF04924 Pox_A6: Poxvirus A6 protein ; InterPro: IPR007008 This is a family of poxvirus A6 proteins have no known function.
Probab=60.19 E-value=76 Score=27.38 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH----HHHHHHHhhhcCCCCCceeeeeHHHHHHHhcccc
Q 023338 216 PVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT----VKGLTEKFKERDTTYSGSATFTYENFMLAVLPFL 281 (283)
Q Consensus 216 ~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~----~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~~~~ 281 (283)
+.-+-.++..|+.+-- +.+..++|+.+++.- +-.-..++...+...-....-.+-.|+..++.-+
T Consensus 177 eNYllKiIAvFds~Lv-tDK~KL~EYreiftiS~es~i~GIrCisdlei~si~~~nnKYv~FfKKiL~~v 245 (371)
T PF04924_consen 177 ENYLLKIIAVFDSDLV-TDKEKLEEYREIFTISTESIIHGIRCISDLEIPSIDIDNNKYVSFFKKILSNV 245 (371)
T ss_pred hhhHHHHHHHHhhhhh-hchhhHHHHHHHHhhhHHHHHHHhhhhhcccccceecccchHHHHHHHHhCce
Confidence 3445567777766532 134556677666552 1122234444444322222235666776666544
No 293
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=59.89 E-value=1e+02 Score=27.12 Aligned_cols=17 Identities=24% Similarity=0.198 Sum_probs=11.0
Q ss_pred CCCCchhHHHHHHHHcc
Q 023338 110 PPGTDPNIVACFQLADR 126 (283)
Q Consensus 110 ~~~~~~~l~~~F~~~d~ 126 (283)
.......++.+|..+..
T Consensus 149 ~~~Awp~ik~ifq~iaa 165 (487)
T KOG2653|consen 149 SKEAWPHIKDIFQKIAA 165 (487)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 44455678888886543
No 294
>PF04947 Pox_VLTF3: Poxvirus Late Transcription Factor VLTF3 like ; InterPro: IPR007031 Members of this family are approximately 26 kDa, and are involved in trans-activation of late transcription [].; GO: 0046782 regulation of viral transcription
Probab=59.72 E-value=81 Score=24.52 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=40.8
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHH-HHHHH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNE-LREAL 207 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~e-l~~~l 207 (283)
...||...++.+|+.++..-.-+.+..|...+....--.|+-+.-..+.....++...|..+-.+....|+..- |-++|
T Consensus 50 ~~~it~~~V~~~LK~l~~~K~Y~~v~~I~~~ltg~~p~~ls~~~e~~l~~~F~~~~~~~~~~~~~rkn~iny~yvL~kll 129 (171)
T PF04947_consen 50 ISDITKNHVREFLKKLGYSKYYEHVFLILNILTGKPPPNLSSELEERLMIIFDELQKPFDKHKKERKNFINYSYVLYKLL 129 (171)
T ss_pred HHHcCHHHHHHHHHHcCCcchHhHHHHHHHHHcCCCCcccCHHHHHHHHHHHHHHHHHHHHhccchhcccchHHHHHHHH
Confidence 34566666677777666544445555555555433212222221111222223444444443345566666664 44455
Q ss_pred HHcCCC
Q 023338 208 MSLGFA 213 (283)
Q Consensus 208 ~~l~~~ 213 (283)
..++.+
T Consensus 130 ~~l~~~ 135 (171)
T PF04947_consen 130 ELLGYD 135 (171)
T ss_pred HHhCCC
Confidence 555543
No 295
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=59.71 E-value=93 Score=25.20 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=5.8
Q ss_pred CCccCHHHHHH
Q 023338 129 SGLIDDKELQG 139 (283)
Q Consensus 129 ~g~i~~~el~~ 139 (283)
+.+|+.+-+.+
T Consensus 98 etTISAKvm~~ 108 (238)
T PF02084_consen 98 ETTISAKVMED 108 (238)
T ss_pred CccccHHHHHH
Confidence 55666654443
No 296
>PF15326 TEX15: Testis expressed sequence 15
Probab=59.45 E-value=32 Score=27.68 Aligned_cols=61 Identities=10% Similarity=0.045 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHHHHHHHhc
Q 023338 216 PVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 216 ~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
-..|.+++..+|...| -++=-++...+-..++.++++|++...+.-..|-++.+-.+++++
T Consensus 77 I~~lseIL~qAde~as--L~~LQelt~~C~~~L~~f~k~Fe~~Qe~s~d~IfIs~e~vle~~~ 137 (233)
T PF15326_consen 77 ICCLSEILDQADEAAS--LKKLQELTLRCQNHLPIFKKYFERLQECSFDQIFISRELVLEQNL 137 (233)
T ss_pred HHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeeHHHHHHHhc
Confidence 3456667777764332 122223334444456777788887777666777777776666554
No 297
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=58.41 E-value=28 Score=22.10 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
+=.|+++-++.++..+|...++..|..+.+....
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~mk~ 62 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKN 62 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHh
Confidence 4579999999999999999999999999887643
No 298
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=58.35 E-value=30 Score=21.71 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHh
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTF 160 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 160 (283)
+..+|.+||...+..+...++.+++-.|+..+
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 44577788888888887777777777776654
No 299
>COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only]
Probab=57.84 E-value=1.1e+02 Score=26.71 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=12.8
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
+..+++...+..+-..++.+++.++..
T Consensus 371 l~~a~klqkKaakvgFD~~~ve~~w~k 397 (488)
T COG3956 371 LILAEKLQKKAAKVGFDWANVEEAWDK 397 (488)
T ss_pred HHHHHHHHHHHHhcCCCHHhHHHHHHH
Confidence 334444444444444555555544443
No 300
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=57.64 E-value=92 Score=24.48 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=19.8
Q ss_pred CccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCC
Q 023338 130 GLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNT 163 (283)
Q Consensus 130 g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~ 163 (283)
..++...+.+.|..-. ....+.++..+..+|-.
T Consensus 45 ~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~ 77 (185)
T cd00171 45 EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFS 77 (185)
T ss_pred CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCC
Confidence 3467777777775432 24456666666666654
No 301
>PLN02223 phosphoinositide phospholipase C
Probab=57.37 E-value=44 Score=31.02 Aligned_cols=64 Identities=11% Similarity=0.015 Sum_probs=45.6
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhc---C--ccCCHHHHHHHHHHhcCC--------CCCccCHHHHHHHHHh
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSY---N--QSFSLRTVRLLMYTFTNT--------NARKIGPKEFIQVFHS 179 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~---~--~~~~~~~~~~l~~~~d~~--------~~g~i~~~ef~~~~~~ 179 (283)
+.++++|..+. ++.+.++.+.|.++|.-+ . ...+.++++.|+..+-.. ..+.++++.|...+..
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 78999999884 557889999999988332 1 345666777777654322 2256999999988764
No 302
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.35 E-value=61 Score=31.75 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=32.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 169 GPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 169 ~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
+|.+|+.+...+..++..++.-+.+-.|..+.. +...++++
T Consensus 214 n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~-l~n~i~~~ 254 (934)
T KOG2347|consen 214 NFDSFISCKDTLDNIHQKLERGEEDPHGSGTTK-LENCIKNS 254 (934)
T ss_pred chhHHHHHHHHHHHHHHHHhccccCccchHHHH-HHHHHHHh
Confidence 588999999999999999998777777777666 67777654
No 303
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=57.14 E-value=4.9 Score=31.65 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=24.0
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVR 154 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~ 154 (283)
+.+|++|..||.+.--..+.+++..++..-+...+...++
T Consensus 54 e~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~ 93 (187)
T PRK10353 54 ENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQ 93 (187)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHH
Confidence 4467777777776666666777777666544433343333
No 304
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=56.83 E-value=42 Score=21.62 Aligned_cols=29 Identities=7% Similarity=0.013 Sum_probs=17.3
Q ss_pred CHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 133 DDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 133 ~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
+.+++.++++..+..++.+++..+++.-+
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~ 43 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKED 43 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCC
Confidence 44456666666666666666666665543
No 305
>PRK01844 hypothetical protein; Provisional
Probab=56.74 E-value=41 Score=21.88 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=33.2
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
|+.|+..-++ +--|+.+-++..+...|.+.+++.++.+++.++
T Consensus 26 rk~~~k~lk~-NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 26 RKYMMNYLQK-NPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred HHHHHHHHHH-CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 3444443332 567999999999999999999999999988763
No 306
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=56.73 E-value=48 Score=24.85 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.4
Q ss_pred CCccCHHHHHHHHHhc
Q 023338 129 SGLIDDKELQGALSSY 144 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~ 144 (283)
||.++.+|++.++..+
T Consensus 38 dg~~~~~e~~~~~~~~ 53 (144)
T COG3793 38 DGEVDSEEKQKMVQFL 53 (144)
T ss_pred ccccChHHHHHHHHHH
Confidence 4555555555555443
No 307
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=56.48 E-value=2e+02 Score=27.99 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=11.2
Q ss_pred CCCccCHHHHHHHHHH
Q 023338 194 RSGKIDSNELREALMS 209 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~ 209 (283)
++|.|+.+.+..++..
T Consensus 228 g~g~It~e~V~~lLG~ 243 (709)
T PRK08691 228 GSGKVAENDVRQMIGA 243 (709)
T ss_pred cCCCcCHHHHHHHHcc
Confidence 3567888877777654
No 308
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=56.45 E-value=18 Score=23.15 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=31.3
Q ss_pred CCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCC
Q 023338 128 NSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTN 164 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~ 164 (283)
.++-+...++.+.|...+..++++.+...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3567899999999988899999999999999887654
No 309
>PRK00523 hypothetical protein; Provisional
Probab=56.44 E-value=33 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=29.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
+=.|+++-++.++..+|...++..|+.+.+..+
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~mk 69 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSVK 69 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 458999999999999999999999999988874
No 310
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=56.40 E-value=7.8 Score=36.24 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCCCCccCHHHHHHHHHh---------------HHHHHHHHHHhccCCC---------------------
Q 023338 152 TVRLLMYTFTNTNARKIGPKEFIQVFHS---------------LQNWRAMFEKVDRDRS--------------------- 195 (283)
Q Consensus 152 ~~~~l~~~~d~~~~g~i~~~ef~~~~~~---------------~~~~~~~f~~~D~~~~--------------------- 195 (283)
..++++..+|.+.++.++|.+|..+... +..+..+|..+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~ 517 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKK 517 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccc
Confidence 3466667778888888988888766442 1235567778888877
Q ss_pred --CccCHHHHHHHHH
Q 023338 196 --GKIDSNELREALM 208 (283)
Q Consensus 196 --G~i~~~el~~~l~ 208 (283)
+.++.+|+..+|.
T Consensus 518 s~~~vtVDe~v~ll~ 532 (975)
T KOG2419|consen 518 SFGVVTVDELVALLA 532 (975)
T ss_pred ccCeeEHHHHHHHHH
Confidence 8899998887776
No 311
>CHL00091 apcE phycobillisome linker protein
Probab=56.31 E-value=30 Score=33.85 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCCccCHHHHHHHHHhHHHHHHH
Q 023338 164 NARKIGPKEFIQVFHSLQNWRAM 186 (283)
Q Consensus 164 ~~g~i~~~ef~~~~~~~~~~~~~ 186 (283)
.+|.|+..||+..+.+.+..+..
T Consensus 304 rnG~IsVReFIR~LakS~~Yr~~ 326 (877)
T CHL00091 304 KNGQISIKEFIRALGKSEIYRKQ 326 (877)
T ss_pred hcCCccHHHHHHHHhccHHHHHH
Confidence 35889999999998865444443
No 312
>PLN00035 histone H4; Provisional
Probab=56.19 E-value=69 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=21.6
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCC
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGF 212 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~ 212 (283)
++++....+..+.-+|+.+++..+|+..+.
T Consensus 67 ~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 67 IRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 455555556677778999999888887654
No 313
>PF08812 YtxC: YtxC-like family; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis [].
Probab=55.93 E-value=1.1e+02 Score=24.88 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 217 VVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 217 ~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+.++.++..+..++ .|.||+++++..
T Consensus 103 ~~ve~aVdEy~~Ek------EY~eFI~lLryF 128 (221)
T PF08812_consen 103 EIVEKAVDEYLMEK------EYQEFIQLLRYF 128 (221)
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34666666665543 478888888853
No 314
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=55.83 E-value=1.2e+02 Score=27.24 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=27.7
Q ss_pred ccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 191 DRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 191 D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
|.|++-..|.++...+....+...+..+++.+.+....+.. +.+.++..++.+.+
T Consensus 286 dwDgs~qfSgD~~fg~g~gt~A~~d~aeleqLaEqLs~s~~--~d~dlda~~rqLgD 340 (652)
T COG4867 286 DWDGSQQFSGDNPFGMGEGTQALADIAELEQLAEQLSQSYP--GDVDLDALARQLGD 340 (652)
T ss_pred CCCcccCcCCCCccccchhhHHHhhhhhHHHHHHHHhccCc--cccchHHHHHHHHH
Confidence 44555555555543333222222233445566666655542 56777776666553
No 315
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=55.70 E-value=51 Score=23.69 Aligned_cols=35 Identities=6% Similarity=-0.105 Sum_probs=18.3
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 211 GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 211 ~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
...++.+|-+.++...+.-.+ |.|++...+.++..
T Consensus 63 k~~ls~~EK~~~~~~i~~yr~--g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 63 KKKLSSEEKQHFLDLIEDYRE--GKIPLSVPLTLLKH 97 (117)
T ss_pred HHhCCHHHHHHHHHHHHHHHc--CCccHHHHHHHHHH
Confidence 334555555555555444442 56666665555553
No 316
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=55.69 E-value=23 Score=29.69 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=30.9
Q ss_pred hhHHHHHHHHccC--CCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhcc
Q 023338 115 PNIVACFQLADRD--NSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDR 192 (283)
Q Consensus 115 ~~l~~~F~~~d~d--~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~ 192 (283)
..+.+++..+..+ ....++.+|..+.-.-+...+....++.+++-+-..+--..+..+|+..+..+ -|..+.+
T Consensus 64 ~af~~LlDNY~~~tg~~E~~T~ee~~E~~~FLd~i~~T~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~i-----WF~~Y~R 138 (265)
T PF09412_consen 64 AAFIALLDNYERDTGVAEVVTPEERQEQDAFLDAIMETKVMKLAHQFLVSKGLAPSDEAEFKKQLKNI-----WFGLYSR 138 (265)
T ss_dssp HHHHHHHHHTTSSSSTTT---HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTTSS-SSHHHHHHHHHHH-----HTS-B-S
T ss_pred HHHHHHHhccccccCCcccCCHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh-----CCccccC
Confidence 3445555544332 23344444443332222222333344444433322222234555555444321 2344433
Q ss_pred CCCCccCHHHHHHHHH
Q 023338 193 DRSGKIDSNELREALM 208 (283)
Q Consensus 193 ~~~G~i~~~el~~~l~ 208 (283)
.+.+ ++..-|++++.
T Consensus 139 ~~~~-~dSSGFEHVFv 153 (265)
T PF09412_consen 139 GSGG-LDSSGFEHVFV 153 (265)
T ss_dssp STTS---B-HHHHHTT
T ss_pred CCCC-CCCcccceeee
Confidence 3222 44455555543
No 317
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=55.56 E-value=71 Score=24.04 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=9.0
Q ss_pred ccCHHHHHHHHHh
Q 023338 167 KIGPKEFIQVFHS 179 (283)
Q Consensus 167 ~i~~~ef~~~~~~ 179 (283)
.|+++||...+..
T Consensus 48 ~Is~~ef~~~v~~ 60 (145)
T PF13623_consen 48 KISYQEFQQRVEQ 60 (145)
T ss_pred EcCHHHHHHHHHH
Confidence 4788888776554
No 318
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=55.51 E-value=26 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHHHHHHH
Q 023338 210 LGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLA 276 (283)
Q Consensus 210 l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~~~ 276 (283)
+......++|.+++..+..... --..|++-+-+++-+.++| .|.+..+|.+ ++.+|++.
T Consensus 123 l~~~~~akEi~elw~eYE~~ss-----~Eak~VKdlDK~eMi~Qaf-EYE~~~ng~~--~lq~F~st 181 (210)
T KOG3197|consen 123 LIGELRAKEITELWLEYEEASS-----LEAKFVKDLDKFEMIVQAF-EYEKKHNGEK--DLQQFFST 181 (210)
T ss_pred hcchhhHHHHHHHHHHHHhcCc-----hhHHHHHhhHHHHHHHHHH-HHHHHhcccc--hHHHHHHh
Confidence 3333455667777777755432 1123555544555455555 3333334433 45555544
No 319
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=55.41 E-value=16 Score=23.96 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=6.9
Q ss_pred CccCHHHHHHHHH
Q 023338 166 RKIGPKEFIQVFH 178 (283)
Q Consensus 166 g~i~~~ef~~~~~ 178 (283)
|.+.-+||..++.
T Consensus 29 Gkv~~ee~n~~~e 41 (75)
T TIGR02675 29 GKLRGEEINSLLE 41 (75)
T ss_pred CcccHHHHHHHHH
Confidence 5555555555543
No 320
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=55.35 E-value=34 Score=22.91 Aligned_cols=45 Identities=24% Similarity=0.253 Sum_probs=31.4
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
-+.++|++.|. |...+.+.|...+..++...- -+.++.+||+.++
T Consensus 42 ~~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~-~~~~~~~el~~~l 86 (86)
T PF10437_consen 42 EDIEELEEALI--GCPYDREAIKEALNSVDLEDY-FGNISVEELIELL 86 (86)
T ss_dssp CCHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGT-CCTHHHHHHHHHH
T ss_pred hHHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhc-cccCCHHHHHHhC
Confidence 44677777774 556678888888888855432 2568888888764
No 321
>PHA03378 EBNA-3B; Provisional
Probab=54.87 E-value=1.4e+02 Score=28.61 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------CCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 023338 5 PQPPPGYGYGSAQPPSSQGYASHHGGPP-------------SSQPYSA----QYGAPPTAQPYSAQYGAPPTAQPYGARP 67 (283)
Q Consensus 5 p~~~~~~~~~~~~pp~~~~y~~~~~~~p-------------~~~~~~~----~~g~~p~~~p~~~~~~~ppp~~~~~~~p 67 (283)
.+|+.+.+.-..|...+.+-.++.+.|- |+++.++ +.++|.+-+|+++.-|+|-|.+++.++|
T Consensus 705 ~pPa~~P~~~qpP~~ap~p~~PPa~tP~~~~~Pa~aP~p~~PPa~aP~~~~~P~~AP~~~~PPa~tPgaptP~~pPq~~P 784 (991)
T PHA03378 705 RPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPP 784 (991)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 023338 68 HAAPSAPSYGGPSAAPASAP 87 (283)
Q Consensus 68 ~~~~~~~~~~~ppp~~~~~~ 87 (283)
-....+.+.+.|.|+++.++
T Consensus 785 ~~~Qrp~gaPtP~ppPQ~~P 804 (991)
T PHA03378 785 APQQRPRGAPTPQPPPQAGP 804 (991)
T ss_pred ccccCCCCCCCCCCCCCCCC
No 322
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=54.63 E-value=65 Score=26.15 Aligned_cols=31 Identities=6% Similarity=0.018 Sum_probs=17.3
Q ss_pred CccCHHHHHHHHHh---------HHHHHHHHHHhccCCCC
Q 023338 166 RKIGPKEFIQVFHS---------LQNWRAMFEKVDRDRSG 196 (283)
Q Consensus 166 g~i~~~ef~~~~~~---------~~~~~~~f~~~D~~~~G 196 (283)
|.|++.|....+++ -+++..+.+.++.-+.|
T Consensus 112 Gii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg~g 151 (223)
T PF04157_consen 112 GIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLGLG 151 (223)
T ss_dssp SEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCTSS
T ss_pred CEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcCCC
Confidence 55666666555543 23556666666655554
No 323
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=54.58 E-value=48 Score=24.72 Aligned_cols=69 Identities=9% Similarity=0.168 Sum_probs=43.4
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCC-----CccCHHHHHHHHHhHHHHHHHHHHhccC-CCCccCHHHHHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNA-----RKIGPKEFIQVFHSLQNWRAMFEKVDRD-RSGKIDSNELRE 205 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~-----g~i~~~ef~~~~~~~~~~~~~f~~~D~~-~~G~i~~~el~~ 205 (283)
.+.++++.+...+..+++.+++..+++.++.-.. -.|+......++.. ++ .+ ..-.+..+.|+.
T Consensus 27 WT~eDV~~~a~gme~~lTd~E~~aVL~~I~~~~~~~~~~~GVs~~~V~el~~~---~r-------~~~R~VtVPA~lLe~ 96 (139)
T PF07128_consen 27 WTREDVRALADGMEYNLTDDEARAVLARIGDIPEDQRHEEGVSSGTVMELIRE---VR-------RAARQVTVPADLLER 96 (139)
T ss_pred ecHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCccccchhccccHHHHHHHHHH---HH-------hcCCcccccHHHHHH
Confidence 3778888888878888999999999999875321 12333332222222 11 11 445777777777
Q ss_pred HHHHc
Q 023338 206 ALMSL 210 (283)
Q Consensus 206 ~l~~l 210 (283)
++...
T Consensus 97 vl~~A 101 (139)
T PF07128_consen 97 VLRLA 101 (139)
T ss_pred HHHHH
Confidence 77643
No 324
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=54.55 E-value=32 Score=24.00 Aligned_cols=16 Identities=44% Similarity=0.466 Sum_probs=11.2
Q ss_pred CCccCHHHHHHHHHhc
Q 023338 129 SGLIDDKELQGALSSY 144 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~ 144 (283)
||.++.+|...+.+.+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 6778887777666554
No 325
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=54.48 E-value=3.5 Score=32.23 Aligned_cols=43 Identities=12% Similarity=0.218 Sum_probs=25.4
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLM 157 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~ 157 (283)
..++++|..||.+.-...+.+++.+++..-+...+...++.++
T Consensus 49 ~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~iIRnr~KI~Avi 91 (179)
T PF03352_consen 49 EAFREAFAGFDPEKVAKMDEEDIERLMQDPGIIRNRRKIRAVI 91 (179)
T ss_dssp HHHHHHTGGGHHHHHHT--HHHHHHHTTSTTSS--HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHcCCHHHHHHHhcCcchhhhHHHHHHHH
Confidence 4577778777777666677777777776655554555554443
No 326
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=54.40 E-value=9.6 Score=27.31 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=23.2
Q ss_pred cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 147 SFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 147 ~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
.++++.++.|++.+-.+..|+|.+.||+..+...
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 3678899999999999999999999999887743
No 327
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=54.33 E-value=70 Score=22.11 Aligned_cols=59 Identities=10% Similarity=0.117 Sum_probs=41.0
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcC
Q 023338 194 RSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERD 259 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d 259 (283)
++|.|+.++...|-.. .-+.+.+..++...-.. |.--|..|+.++.....+.+.+...+
T Consensus 32 ~~gIlT~~~~e~I~a~---~T~~~k~~~LLdiLp~R----G~~AF~~F~~aL~e~~~l~~~l~~~~ 90 (94)
T cd08327 32 QEGILTESHVEEIESQ---TTSRRKTMKLLDILPSR----GPKAFHAFLDSLEEFPWVRDKLLKLR 90 (94)
T ss_pred hCCCCCHHHHHHHHcc---CChHHHHHHHHHHHHhh----ChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568888888887752 23456677777777654 55789999999887666666665544
No 328
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=54.24 E-value=2.4e+02 Score=28.16 Aligned_cols=14 Identities=0% Similarity=0.076 Sum_probs=8.1
Q ss_pred CCccCHHHHHHHHH
Q 023338 165 ARKIGPKEFIQVFH 178 (283)
Q Consensus 165 ~g~i~~~ef~~~~~ 178 (283)
++.|+.+....++.
T Consensus 231 ~~~IT~e~V~allg 244 (824)
T PRK07764 231 PEGVTYERAVALLG 244 (824)
T ss_pred CCCCCHHHHHHHhc
Confidence 34566666666554
No 329
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=53.95 E-value=88 Score=23.14 Aligned_cols=78 Identities=18% Similarity=0.307 Sum_probs=37.8
Q ss_pred CCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHH-cCCCC-CHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 023338 165 ARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMS-LGFAV-SPVVLDLLVTKFDKTGGKSKAIEYDNFI 242 (283)
Q Consensus 165 ~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~-l~~~~-~~~~i~~l~~~~d~~~d~~g~i~~~eF~ 242 (283)
+|.|+..||+..+...+..+..|- +... ...-++...+. ||... +.+|+...+...... -++.|+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~--~~~~----~~R~iEl~~khlLGR~p~~~~Ei~~~~~i~a~~-------G~~a~I 108 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFF--EPNS----NYRFIELAFKHLLGRAPYNQAEISAYSQILASQ-------GFEAFI 108 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHT--TTS-----HHHHHHHHHHHHCSS--SSHHHHHHHHHHHHHH-------HHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHc--cccc----chHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------ChHHHH
Confidence 478999999999886544443332 2111 11112223332 34443 366766666655432 245555
Q ss_pred HHHHHHHHHHHHh
Q 023338 243 ECCLTVKGLTEKF 255 (283)
Q Consensus 243 ~~~~~~~~~~~~f 255 (283)
..+.+-....+.|
T Consensus 109 d~lldS~EY~~~F 121 (131)
T PF00427_consen 109 DALLDSEEYLEAF 121 (131)
T ss_dssp HHHHTSHHHHHHT
T ss_pred HHHHCcHHHHHHc
Confidence 5555444444444
No 330
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=53.86 E-value=18 Score=25.29 Aligned_cols=15 Identities=7% Similarity=0.056 Sum_probs=8.0
Q ss_pred CceeeeeHHHHHHHh
Q 023338 263 SGSATFTYENFMLAV 277 (283)
Q Consensus 263 ~g~i~~~~~~~~~~~ 277 (283)
+|.++-.+..++..+
T Consensus 91 DG~~~~~E~~~L~~l 105 (111)
T cd07176 91 DGEVDPEERAVLEKL 105 (111)
T ss_pred cCCCCHHHHHHHHHH
Confidence 345555555565554
No 331
>PF12943 DUF3839: Protein of unknown function (DUF3839); InterPro: IPR024365 This is a family of uncharacterised proteins that are found in Trichomonas.
Probab=53.64 E-value=27 Score=26.73 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=34.4
Q ss_pred ccCHHHHHHHHHHc-----CC----CCCHHHHHHHHHHH-hhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCcee
Q 023338 197 KIDSNELREALMSL-----GF----AVSPVVLDLLVTKF-DKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSA 266 (283)
Q Consensus 197 ~i~~~el~~~l~~l-----~~----~~~~~~i~~l~~~~-d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i 266 (283)
..+..|++.+++.. |+ .+-+.+++.+.+.+ |.-+. ..--+|+.|+.+.+. -+++..|+|++|.+
T Consensus 90 ~tds~eikkfirkvn~eflgfhcnhkvmdkdcdmvyknisdiyks-~efktydnfvslva~-----cvw~ir~kdrrgkv 163 (242)
T PF12943_consen 90 PTDSVEIKKFIRKVNYEFLGFHCNHKVMDKDCDMVYKNISDIYKS-EEFKTYDNFVSLVAK-----CVWQIRDKDRRGKV 163 (242)
T ss_pred ccchHHHHHHHHHcchhhhhheecceecccccchhHHHHHHHhcc-cCccccchHHHHHHH-----HHHHHHccccccch
Confidence 44445555555542 22 22344455444443 22221 134688888888654 35677777777765
No 332
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=53.57 E-value=1.2e+02 Score=24.72 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred CHHHHHHHHH----HcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 199 DSNELREALM----SLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 199 ~~~el~~~l~----~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.+|++.++. .++..++++++..|+..+..-.+ -.+++++|...+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~--~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQN--LNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHc--CCCCHHHHHHHHHh
Confidence 6666665554 35667777777777777665543 34666667666544
No 333
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=53.56 E-value=28 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=30.3
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 194 RSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
.++.++..++.+.|...++.++++.|...++.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 4467888888888888888888888888888887765
No 334
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=53.18 E-value=59 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=32.1
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
+-.++.+.|..+|+..|..+....+..+++.+.. .+.++++..
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-------k~i~elIa~ 57 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALEG-------KDIKDLLSN 57 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-------CCHHHHhhc
Confidence 3479999999999999988888877777777732 445666543
No 335
>PRK10547 chemotaxis protein CheA; Provisional
Probab=53.11 E-value=47 Score=31.98 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023338 220 DLLVTKF 226 (283)
Q Consensus 220 ~~l~~~~ 226 (283)
+.++..+
T Consensus 68 E~lld~v 74 (670)
T PRK10547 68 ENLLDEA 74 (670)
T ss_pred HHHHHHH
Confidence 3333333
No 336
>PRK01381 Trp operon repressor; Provisional
Probab=52.93 E-value=77 Score=22.15 Aligned_cols=11 Identities=0% Similarity=-0.046 Sum_probs=5.1
Q ss_pred CcccHHHHHHH
Q 023338 234 KAIEYDNFIEC 244 (283)
Q Consensus 234 g~i~~~eF~~~ 244 (283)
|.+++.|....
T Consensus 54 g~~sQREIa~~ 64 (99)
T PRK01381 54 GELSQREIKQE 64 (99)
T ss_pred CCcCHHHHHHH
Confidence 34555554443
No 337
>PHA03155 hypothetical protein; Provisional
Probab=52.32 E-value=78 Score=22.62 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=51.4
Q ss_pred ccCHHHHHHHHHhH----HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHH
Q 023338 167 KIGPKEFIQVFHSL----QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFI 242 (283)
Q Consensus 167 ~i~~~ef~~~~~~~----~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~ 242 (283)
..+.+|+..-+..+ +.|+...+.--...++.|+..+=+.++...-..++..-.+.|-..+..+-. ..++.+++.
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~KIe~kVrk~~~--~~vTk~q~~ 84 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEKIRERVLKDLL--PLVSKNQCM 84 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhccHHHHH
Confidence 35677777666543 355555554434667899999888888776545555555555555555543 567888887
Q ss_pred HHHHHH
Q 023338 243 ECCLTV 248 (283)
Q Consensus 243 ~~~~~~ 248 (283)
..+..+
T Consensus 85 ~al~~l 90 (115)
T PHA03155 85 EAIADI 90 (115)
T ss_pred HHHhcC
Confidence 776654
No 338
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=52.24 E-value=24 Score=16.94 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=6.4
Q ss_pred ccCCCCccCHHHHH
Q 023338 191 DRDRSGKIDSNELR 204 (283)
Q Consensus 191 D~~~~G~i~~~el~ 204 (283)
|.|++|.|+.-++.
T Consensus 1 DvN~DG~vna~D~~ 14 (21)
T PF00404_consen 1 DVNGDGKVNAIDLA 14 (21)
T ss_dssp -TTSSSSSSHHHHH
T ss_pred CCCCCCcCCHHHHH
Confidence 34455555554443
No 339
>PHA03162 hypothetical protein; Provisional
Probab=52.21 E-value=92 Score=22.88 Aligned_cols=80 Identities=9% Similarity=0.150 Sum_probs=40.5
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHH-hcCC---CCCccCHHHHHHHHHh------HHHHHHHHHHhccCCCCccCHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYT-FTNT---NARKIGPKEFIQVFHS------LQNWRAMFEKVDRDRSGKIDSN 201 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~-~d~~---~~g~i~~~ef~~~~~~------~~~~~~~f~~~D~~~~G~i~~~ 201 (283)
.+++||..-|..|- +-...++.-+.. .+.+ ++-.||-.+=..++.. ....+.+-..+.++-...++.+
T Consensus 13 ~tmEeLaaeL~kLq--mENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe~KVr~~t~~~vTk~ 90 (135)
T PHA03162 13 PTMEDLAAEIAKLQ--LENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIEAKIRHETLKATTKE 90 (135)
T ss_pred CCHHHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHH
Confidence 56777777776652 223344333322 2221 1233444443333321 1233444455566666777888
Q ss_pred HHHHHHHHcCCC
Q 023338 202 ELREALMSLGFA 213 (283)
Q Consensus 202 el~~~l~~l~~~ 213 (283)
|++++|.++.++
T Consensus 91 e~e~aL~~lt~R 102 (135)
T PHA03162 91 EFEAAIANIRFR 102 (135)
T ss_pred HHHHHHhcCeee
Confidence 888888776554
No 340
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=51.95 E-value=91 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=31.4
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhC
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVSPVVLDLLVTKFDKT 229 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~~~~i~~l~~~~d~~ 229 (283)
..|+.+|++|..+ .|+.+.+-.++.+. |..++...++-+...+..|
T Consensus 37 ~Kl~~Il~mFl~~---eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~~n 83 (122)
T PF06648_consen 37 DKLIKILKMFLND---EIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVYNN 83 (122)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHhcccHhhcCHHHHHHHHHHHHcc
Confidence 4566677777554 67777777777765 4577777777777666544
No 341
>PF12307 DUF3631: Protein of unknown function (DUF3631); InterPro: IPR022081 This domain is found in uncharacterised proteins and in tripartite motif containing (TRIM) protein 41. This protein functions as an E3 ligase that catalyzes the ubiquitin-mediated degradation of protein kinase C [].
Probab=51.82 E-value=64 Score=25.41 Aligned_cols=46 Identities=28% Similarity=0.444 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHc----------CCCCCHHHHHHHHHHHhh
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSL----------GFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l----------~~~~~~~~i~~l~~~~d~ 228 (283)
+.+|+.+|..-|.+ .|+..+|...|..+ |..++...+-.+++.|+.
T Consensus 102 L~DIr~vf~~~~~~---~i~T~dLl~~L~~~~e~pW~~~~~g~~Lt~r~La~~L~~ygI 157 (184)
T PF12307_consen 102 LADIREVFEAGGED---RIPTADLLDALNADEEAPWATWNRGKPLTPRQLAKLLKEYGI 157 (184)
T ss_pred HHHHHHHHccCCCC---cccHHHHHHHHHhCCCCchhhcCCCCCCCHHHHHHHHHHCCC
Confidence 34555555543332 56666666666543 233455555555555544
No 342
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=51.72 E-value=1.8e+02 Score=28.06 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=10.2
Q ss_pred cCHHHHHHHHHhHHHHHHHHHHhc
Q 023338 168 IGPKEFIQVFHSLQNWRAMFEKVD 191 (283)
Q Consensus 168 i~~~ef~~~~~~~~~~~~~f~~~D 191 (283)
.++..++.++.....+..+.+.||
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHh
Confidence 334444444443333444444443
No 343
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=51.30 E-value=1.3e+02 Score=28.84 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhccCCC--------CccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH----
Q 023338 180 LQNWRAMFEKVDRDRS--------GKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT---- 247 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~--------G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~---- 247 (283)
..-++.+.+++.++-+ ..|+..| ++..++...-+..++.+-..+ ++.+|..|-+++.+
T Consensus 333 khLlrFIk~klr~epdrvV~~~~g~~lTLre---vF~~l~L~~yDlsvd~ldvha-------~~~tfHrfdkfn~Kynp~ 402 (768)
T KOG1096|consen 333 KHLLRFIKKKLRKEPDRVVIQRDGRKLTLRE---VFKSLGLTAYDLSVDTLDVHA-------DRNTFHRFDKFNAKYNPV 402 (768)
T ss_pred HHHHHHHHHHhhcCCceEEEecCCceeeHHH---HHHHcCCceeccchhHHHhhh-------chhhhhccchhhhhcCCc
Confidence 3445556666654433 3444444 444455544344444443333 23444444444443
Q ss_pred -HHHHHHHhhhcCCCCCce
Q 023338 248 -VKGLTEKFKERDTTYSGS 265 (283)
Q Consensus 248 -~~~~~~~f~~~d~~~~g~ 265 (283)
.+++.++|-++|...+|.
T Consensus 403 g~s~LR~iFLktDNyI~Ge 421 (768)
T KOG1096|consen 403 GESRLREIFLKTDNYINGE 421 (768)
T ss_pred cHHHHHHHHHhhccccchh
Confidence 234556666666655553
No 344
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=51.04 E-value=1.2e+02 Score=29.36 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=6.2
Q ss_pred CCchhHHHHHHHH
Q 023338 112 GTDPNIVACFQLA 124 (283)
Q Consensus 112 ~~~~~l~~~F~~~ 124 (283)
+..++.+++|+..
T Consensus 273 g~~~~A~~vf~~m 285 (697)
T PLN03081 273 GDIEDARCVFDGM 285 (697)
T ss_pred CCHHHHHHHHHhC
Confidence 3344455555543
No 345
>PF10876 DUF2669: Protein of unknown function (DUF2669); InterPro: IPR020351 This entry represents various uncharacterised proteins, which include a 15.3kDa protein from Haemophilus phage Aaphi23.
Probab=50.90 E-value=76 Score=23.23 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=42.3
Q ss_pred cCHHHHHHHHHhHHHHHHHHHHhccCCCCccCH---HHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 168 IGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDS---NELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 168 i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~---~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
++...|+..|..++.+-.+.+..|....|.-.. ..+..+|+++|.. .-.+|+.++-.+.
T Consensus 10 mtpaNa~~aw~~lkk~~~ll~g~~~~~~G~~~~~~~~~vg~ilsnlG~~-e~~~lE~~Vlk~t 71 (133)
T PF10876_consen 10 MTPANAIEAWAALKKALGLLQGCDISNNGNGVDIAAIDVGAILSNLGSP-EMQGLEAFVLKYT 71 (133)
T ss_pred echhHHHHHHHHHHHHHHHHhcCchhccCCccchHHHHHHHHHHhcCCH-HHHHHHHHHHhhh
Confidence 556778888888888888888887766665555 7888999998753 3456776665543
No 346
>PHA02105 hypothetical protein
Probab=50.39 E-value=24 Score=21.65 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=20.9
Q ss_pred cCHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 198 IDSNELREALMSL---GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 198 i~~~el~~~l~~l---~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
++.+|++.++... ...+..+.++.+...|....-.---++|+||.+.+-
T Consensus 5 lt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 5 LTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred ecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 4445555555432 223344444444444433321112356666655443
No 347
>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex. The ELL is an 80kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. ; PDB: 2ZME_A 3CUQ_A 1W7P_D 1U5T_B.
Probab=50.31 E-value=1.4e+02 Score=24.27 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=33.3
Q ss_pred CHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcC---CCCCHHHHHHHHHHHhhCC
Q 023338 169 GPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLG---FAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 169 ~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~---~~~~~~~i~~l~~~~d~~~ 230 (283)
+..+|-.-+. .++.++....-....|.|+..|+..++.... ..++.++|...++.+..-+
T Consensus 87 ~~~~f~~ELa--~qi~e~c~~~~~~~GGii~L~dl~~~~nr~R~g~~lISp~Di~~A~~~l~~lg 149 (223)
T PF04157_consen 87 GSGDFYYELA--VQIAEVCLATRSKNGGIISLSDLYCRYNRARGGSELISPEDILRACKLLEVLG 149 (223)
T ss_dssp CHHHHHHHHH--HHHHHHHHHHCCTTTSEEEHHHHHHHHHHCTTTSST--HHHHHHHHHHHCCCT
T ss_pred cchhHHHHHH--HHHHHHHHHHHhcCCCEEEHHHHHHHHHHhcccCCCcCHHHHHHHHHHHHHcC
Confidence 4555544332 2333334444444557888888887777642 2456777777777775544
No 348
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.11 E-value=35 Score=34.19 Aligned_cols=13 Identities=8% Similarity=0.322 Sum_probs=8.1
Q ss_pred cccHHHHHHHHHH
Q 023338 235 AIEYDNFIECCLT 247 (283)
Q Consensus 235 ~i~~~eF~~~~~~ 247 (283)
.++|++|...+..
T Consensus 1078 ~~tf~D~kqlLl~ 1090 (1206)
T KOG2079|consen 1078 LMTFQDLKQLLLN 1090 (1206)
T ss_pred eeehhhHHHHHHH
Confidence 4677777665553
No 349
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=49.68 E-value=55 Score=23.14 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=33.8
Q ss_pred hcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc---CC-CCCHHHHHHHHHHHh
Q 023338 160 FTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL---GF-AVSPVVLDLLVTKFD 227 (283)
Q Consensus 160 ~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l---~~-~~~~~~i~~l~~~~d 227 (283)
+|.+.+..||+++...++.. -.-|+..|....-.|+..-|-+++... +. -++.+.+..+++.++
T Consensus 12 YDT~tS~YITLedi~~lV~~----g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg 79 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVRE----GREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQIIRFYG 79 (107)
T ss_pred cCCCccceeeHHHHHHHHHC----CCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC
Confidence 45566666777776666553 223455555555555555555544432 11 244555566665553
No 350
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=49.62 E-value=1.2e+02 Score=29.90 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=34.0
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCC----CCccCHHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTN----ARKIGPKEFIQVFH 178 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~----~g~i~~~ef~~~~~ 178 (283)
..++++|+.+.+...+.|=++|+..++..-...-...++..+++.+-..+ -|.-|++||...+.
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~ 332 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhh
Confidence 45777777776666778878888877654221122233333333222121 24456777655443
No 351
>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]
Probab=49.56 E-value=1.1e+02 Score=28.66 Aligned_cols=56 Identities=9% Similarity=0.223 Sum_probs=37.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHHHH-HHHHhhhcCCCCCceeeeeHH---HHHHHhccc
Q 023338 223 VTKFDKTGGKSKAIEYDNFIECCLTVKG-LTEKFKERDTTYSGSATFTYE---NFMLAVLPF 280 (283)
Q Consensus 223 ~~~~d~~~d~~g~i~~~eF~~~~~~~~~-~~~~f~~~d~~~~g~i~~~~~---~~~~~~~~~ 280 (283)
|+..+.|+ .-.|+....++++.++.. +.+......+|+...|-|++. .|++.++++
T Consensus 592 FHqvtedg--~p~lDlaHvl~CLNKLDAG~~EkI~LvSrDE~t~IIvSY~ELK~~le~t~~m 651 (655)
T KOG3741|consen 592 FHQVTEDG--KPWLDLAHVLQCLNKLDAGIQEKILLVSRDELTCIIVSYKELKTILEKTFRM 651 (655)
T ss_pred heEeccCC--ChhhhHHHHHHHhhhccccchhheeEeccCCCcEEEEEHHHHHHHHHHhhcc
Confidence 33344444 356888888888887763 445566666788888888774 477777763
No 352
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=49.37 E-value=85 Score=21.63 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=7.6
Q ss_pred CCccCHHHHHHH
Q 023338 129 SGLIDDKELQGA 140 (283)
Q Consensus 129 ~g~i~~~el~~~ 140 (283)
||.++..|...+
T Consensus 13 DG~v~~~E~~~i 24 (106)
T cd07316 13 DGRVSEAEIQAA 24 (106)
T ss_pred cCCcCHHHHHHH
Confidence 677777765443
No 353
>PRK10945 gene expression modulator; Provisional
Probab=49.18 E-value=45 Score=21.61 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 200 SNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
.+.|++++..+...++.+|++.+...+|
T Consensus 21 ~eTLEkvie~~~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 21 IDTLERVIEKNKYELSDDELAVFYSAAD 48 (72)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 3444555555555555555555555444
No 354
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=49.17 E-value=1.7e+02 Score=24.97 Aligned_cols=92 Identities=17% Similarity=0.233 Sum_probs=42.0
Q ss_pred HHHHHHHHhcC---ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh-HHH-HHHHHH-----Hh-ccCCCCccCHHHH
Q 023338 135 KELQGALSSYN---QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS-LQN-WRAMFE-----KV-DRDRSGKIDSNEL 203 (283)
Q Consensus 135 ~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~-~~~-~~~~f~-----~~-D~~~~G~i~~~el 203 (283)
++|..+|..+. ..-....+..++..++..+.-...|..+..++.. +.. +.++|. .. ..........+++
T Consensus 3 ~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~~~~p~~~~~~~~~~~~~~~~~~ 82 (288)
T PF09184_consen 3 EELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFFESAPEESGPQNPNVEPEDYEEM 82 (288)
T ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHhcCccccCCCCCCcchhhHHHH
Confidence 34455544432 2222345566666666555555667766666543 222 233331 11 1111233455566
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHHH
Q 023338 204 REALMSL--GFAVSPVVLDLLVTKF 226 (283)
Q Consensus 204 ~~~l~~l--~~~~~~~~i~~l~~~~ 226 (283)
+..+..+ .+..-.-.|.+|+..+
T Consensus 83 ~~~~~~~~~~f~~~PfTiqRlcEl~ 107 (288)
T PF09184_consen 83 KERILELLDSFDEPPFTIQRLCELL 107 (288)
T ss_pred HHHHHHHHHhcCCCChhHHHHHHHH
Confidence 5554443 2222334466666665
No 355
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=49.06 E-value=33 Score=24.66 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=13.8
Q ss_pred HcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 209 SLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 209 ~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
..|...++++|+..+..+.... .+|.++|...+.
T Consensus 62 ~~gI~vsd~evd~~i~~ia~~n----~ls~~ql~~~L~ 95 (118)
T PF09312_consen 62 RLGIKVSDEEVDEAIANIAKQN----NLSVEQLRQQLE 95 (118)
T ss_dssp HCT----HHHHHHHHHHHHHHT----T--HHHHHHHCH
T ss_pred HcCCCCCHHHHHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 3455556666655555544332 245555554443
No 356
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=49.06 E-value=55 Score=31.61 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=40.5
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
..+.+|+..-..++-.+..+.+...+ .+++++.++..++...+ ..|+.+.|......
T Consensus 405 aA~~iF~nv~~p~~~~i~ld~~~~f~-------~~E~a~~~~slfe~~~~--~~Itrs~~~~~iv~ 461 (714)
T KOG4629|consen 405 AARKIFKNVAKPGVILIDLDDLLRFM-------GDEEAERAFSLFEGASD--ENITRSSFKEWIVN 461 (714)
T ss_pred HHHHHHhccCCCCccchhhhhhhhcC-------CHHHHHHHHHhhhhhcc--cCccHHHHHHHHHH
Confidence 45667777777766666666665554 66888888888887665 44999888887554
No 357
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.99 E-value=45 Score=33.39 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=13.0
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 023338 236 IEYDNFIECCLTVKGLTEKFKERDTTYSG 264 (283)
Q Consensus 236 i~~~eF~~~~~~~~~~~~~f~~~d~~~~g 264 (283)
..|.+.++.++.+......|+...+..+|
T Consensus 635 ~~y~~~~e~l~~~~~~l~~~~~~~~~s~~ 663 (1049)
T KOG0307|consen 635 TSYQDLAEDLMELTLKLAQFSANKTYSAG 663 (1049)
T ss_pred HHHHHHHHHHHHHHhhhhhcccCccccHH
Confidence 34445554444444444444444443333
No 358
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=48.98 E-value=94 Score=22.04 Aligned_cols=41 Identities=22% Similarity=0.424 Sum_probs=32.7
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIEC 244 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~ 244 (283)
.|+.+.+..+|+..|..+....+..++..+.. .+.++.+..
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-------kdIeElIa~ 56 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-------VNIDEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-------CCHHHHHHh
Confidence 79999999999999998888888888888833 445665544
No 359
>COG3600 GepA Uncharacterized phage-associated protein [Function unknown]
Probab=48.75 E-value=49 Score=24.86 Aligned_cols=43 Identities=14% Similarity=0.025 Sum_probs=32.7
Q ss_pred cCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 168 IGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 168 i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
=-|+|++.++..-..+..+++.|...++..|+.....+.|...
T Consensus 48 pL~~~~ieAW~~GPVip~~Yn~~K~~Gs~~I~~r~~~~~l~~~ 90 (154)
T COG3600 48 PLFDEKIEAWKHGPVIPSLYNAFKQYGSNSIDERLPVRGLSNG 90 (154)
T ss_pred cccccHHHHHhcCCCcHHHHHHHHHcCCCCCCcccchhHHHhh
Confidence 3478888888876666777888888888889888877766654
No 360
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=48.72 E-value=33 Score=25.73 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 208 MSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 208 ~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+..|..+++++++..+.....-.. +|..+.+.|.+++...
T Consensus 94 ~~~gi~vsd~ev~~~i~~~~~f~~-~g~~~~~~f~~~L~~~ 133 (154)
T PF13624_consen 94 KKLGISVSDAEVDDAIKQIPAFQE-NGKFDKEAFEEFLKQQ 133 (154)
T ss_dssp HHTT----HHHHHHHHHH--HHHH-H----HHHHHHHHH--
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHh
Confidence 346888888888888777321100 1556667777766643
No 361
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=48.71 E-value=1.3e+02 Score=23.74 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=34.0
Q ss_pred cCCCCccCHHHHHHHHHhcCc-cCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 126 RDNSGLIDDKELQGALSSYNQ-SFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 126 ~d~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
..-||.||.+|-..++..+.. ..+.++-..|...+.. -++.+++...+...+
T Consensus 90 AkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~----P~d~~~la~~v~~~e 142 (188)
T PF04391_consen 90 AKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAA----PLDPDALAAAVTDPE 142 (188)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhC----CCCHHHHHHhCCCHH
Confidence 345899999999988776643 3455555555555543 367888877775433
No 362
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=48.48 E-value=43 Score=25.01 Aligned_cols=49 Identities=6% Similarity=0.095 Sum_probs=32.4
Q ss_pred CCCccCHHHHHHHHHhc---------CccCCHHHHHHHHHHhcCCCCCc-cCHHHHHHH
Q 023338 128 NSGLIDDKELQGALSSY---------NQSFSLRTVRLLMYTFTNTNARK-IGPKEFIQV 176 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~---------~~~~~~~~~~~l~~~~d~~~~g~-i~~~ef~~~ 176 (283)
++..||.+||.+++..- ...++.++++.+.+.+.....+. +++.|.+.+
T Consensus 80 Gd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 46678888888877653 24557777777777776655443 777665543
No 363
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=48.42 E-value=77 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=21.6
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
|...++..-|++.|.+......+.++..+-.++
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~ 34 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAG 34 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCC
Confidence 345566777777777766666666666665555
No 364
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=48.30 E-value=72 Score=25.91 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHc-CCCCCHHHH-HHHHHHHhhC
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSL-GFAVSPVVL-DLLVTKFDKT 229 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l-~~~~~~~~i-~~l~~~~d~~ 229 (283)
...++..|+.|.++++-.|..+-++.+-+.. ..+++++++ +.|.+.++.+
T Consensus 116 ~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~yes~ 167 (266)
T KOG2616|consen 116 SQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESN 167 (266)
T ss_pred HHHHHHHHHHHhhCCceecCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhccC
Confidence 3457788999988888888776666655543 344555544 4444555544
No 365
>PRK08181 transposase; Validated
Probab=48.22 E-value=55 Score=27.52 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=28.5
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
...|+.+++...|+.|...--.+.++.+...... +.++++||+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a~~-----~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQADK-----EGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHHhh-----cCCCHHHHHHHHHH
Confidence 3467777777777777654333444444443322 34788888777653
No 366
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=48.07 E-value=39 Score=21.25 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=22.0
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLM 157 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~ 157 (283)
.|+.++|..+|+...-.++.+++++..
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye 55 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYE 55 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 589999999999998888888887644
No 367
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.82 E-value=1.6e+02 Score=28.11 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHHhccCCCCccCHHHHHH-HHHHcCCCCCHHHHHHHHHHHhh
Q 023338 175 QVFHSLQNWRAMFEKVDRDRSGKIDSNELRE-ALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 175 ~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~-~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
.++.....+.+.|...|....|.+.-..+.- ....+ +++++|.++|..+..
T Consensus 290 ~~~~~~~~i~~~~~~~~~~~~g~~~~sr~l~~~~~~L---~~dE~I~e~F~~~~t 341 (872)
T KOG4814|consen 290 IVCLDYLLINKLNSKNDSKFLGKAICSRFLITTQSKL---MNDEEIAESFENFST 341 (872)
T ss_pred hHHHHHHHHHHHhhhcccchhhhhhhhHHHHHHHHHH---hhHHHHHHHHHhhhh
Confidence 3334445666777777777666665554332 22222 577888888888765
No 368
>COG3013 Uncharacterized conserved protein [Function unknown]
Probab=47.67 E-value=65 Score=24.05 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=4.3
Q ss_pred CCHHHHHHHH
Q 023338 148 FSLRTVRLLM 157 (283)
Q Consensus 148 ~~~~~~~~l~ 157 (283)
+++++++.++
T Consensus 58 l~E~ecr~ii 67 (168)
T COG3013 58 LPEEECRTII 67 (168)
T ss_pred CCHHHHHHHH
Confidence 3444444443
No 369
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.37 E-value=56 Score=34.78 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHH---HHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 108 TFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLR---TVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 108 ~~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~---~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
...+.+.+++.++++.+|.+..|.|...++..+++.+.-.+.-. ..+.+--.+....++.|++.+.+.++.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKRKLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCceeeeeecCcCCCCeeehhhHHHHHH
Confidence 35667778899999999999999999999999999874322111 012222223344567788887766654
No 370
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=47.27 E-value=2e+02 Score=28.12 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=51.5
Q ss_pred HHHHHHhHHHHHHHHHHhccCCC-------CccCHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHH
Q 023338 173 FIQVFHSLQNWRAMFEKVDRDRS-------GKIDSNELREALMSL--GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIE 243 (283)
Q Consensus 173 f~~~~~~~~~~~~~f~~~D~~~~-------G~i~~~el~~~l~~l--~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~ 243 (283)
+...+++++.+....++|.-|.+ |++...|+.++=.++ +...+..++-.+++..+.++. -=||..-.+
T Consensus 298 W~~~v~K~KaIyhtLN~fn~Dvt~KCLIaE~W~P~~dl~~vq~aL~~~~~~sgS~v~~i~nv~~T~e~---PPTy~RTNK 374 (829)
T KOG2189|consen 298 WLIKVRKEKAIYHTLNMFNFDVTQKCLIAEGWCPVADLPDLQRALERGSEESGSQVPSILNVMETNEM---PPTYFRTNK 374 (829)
T ss_pred HHHHHHHHHHHHHHHhccCccccCceEEEEeecchhhHHHHHHHHHHhhhhcCCcchhhHhheecCCC---CCcchhcch
Confidence 33334445555556666544433 566666655544443 223345567778888877663 233433334
Q ss_pred HHHHHHHHHHHhh--hcCCCCCceeeeeHHHHHHHhc
Q 023338 244 CCLTVKGLTEKFK--ERDTTYSGSATFTYENFMLAVL 278 (283)
Q Consensus 244 ~~~~~~~~~~~f~--~~d~~~~g~i~~~~~~~~~~~~ 278 (283)
+-.-.+.+.++|- .|..-.-+-.++=..-|+-.+|
T Consensus 375 FT~~FQ~IvDaYGVa~YrEvNPa~yTiITFPFLFAVM 411 (829)
T KOG2189|consen 375 FTAGFQNIVDAYGVASYREVNPAPYTIITFPFLFAVM 411 (829)
T ss_pred hhHHHHHHHHhcccccccccCCCceeEeehHHHHHHH
Confidence 4444556666653 2222222334443335555443
No 371
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=47.05 E-value=25 Score=29.14 Aligned_cols=80 Identities=9% Similarity=0.120 Sum_probs=30.6
Q ss_pred hhHHHHHHHHccCCCC-ccCHHHHHHHHHhcC-ccCCHHHH----HHHHHH----hcCCCCCccCHHHHHHHHHhHHHHH
Q 023338 115 PNIVACFQLADRDNSG-LIDDKELQGALSSYN-QSFSLRTV----RLLMYT----FTNTNARKIGPKEFIQVFHSLQNWR 184 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g-~i~~~el~~~l~~~~-~~~~~~~~----~~l~~~----~d~~~~g~i~~~ef~~~~~~~~~~~ 184 (283)
..+.++|..+.....+ ..+..+|..+|..+- .-++++.+ +.|... +..++ ..|+-+++.+.....+.++
T Consensus 101 d~l~~ll~~m~~~~~~~~~~~~~~~~~l~~mm~qL~SKevLYePmKel~~kyP~wL~~n~-~~l~~ed~~rY~~Q~~~v~ 179 (248)
T PF04614_consen 101 DMLAQLLKQMGGGGDGGGGGDEDFDKMLQGMMQQLLSKEVLYEPMKELRDKYPEWLEENK-SKLSAEDYERYEKQYELVK 179 (248)
T ss_dssp ------------------------HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHC-CCS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCCchhHHHHHHHHHHHhccHhhhhhhHHHHHHHhHHHHHhCc-CcCCHHHHHHHHHHHHHHH
Confidence 4466666665554321 333344444443321 22344443 333322 22233 3788888888888877788
Q ss_pred HHHHHhccCCC
Q 023338 185 AMFEKVDRDRS 195 (283)
Q Consensus 185 ~~f~~~D~~~~ 195 (283)
.++..|+...-
T Consensus 180 ~I~~~fE~~~~ 190 (248)
T PF04614_consen 180 EICAIFEKPPY 190 (248)
T ss_dssp HHHHHHHH--T
T ss_pred HHHHHHcCCCC
Confidence 88888876543
No 372
>PHA02335 hypothetical protein
Probab=46.93 E-value=69 Score=22.55 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=10.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcC
Q 023338 236 IEYDNFIECCLTVKGLTEKFKERD 259 (283)
Q Consensus 236 i~~~eF~~~~~~~~~~~~~f~~~d 259 (283)
|++++|..-+.+++-++..|+++.
T Consensus 25 Vt~ddf~~DlkRi~yIkrllKRy~ 48 (118)
T PHA02335 25 VTYDDFEEDLKRFKYIKRLFKRYL 48 (118)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444444444444444444443
No 373
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=46.88 E-value=13 Score=26.61 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 214 VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 214 ~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
++++.++.++..+-.+. .|+|.|-||++.+...
T Consensus 4 LtDeQFdrLW~e~Pvn~--~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNA--KGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-T--TS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCc--cCCEeHHHHHHHcccc
Confidence 57888899998888877 4999999998876643
No 374
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.72 E-value=1.5e+02 Score=26.94 Aligned_cols=42 Identities=7% Similarity=0.172 Sum_probs=23.6
Q ss_pred HHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHH
Q 023338 137 LQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQ 181 (283)
Q Consensus 137 l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~ 181 (283)
+..++......+++++.+.+...+- .|.+|+++|..-+..++
T Consensus 299 v~sLvEk~~~~~d~e~a~~~~~kl~---~g~FtL~Df~~Ql~~m~ 340 (451)
T COG0541 299 VLSLIEKAEEVVDEEEAEKLAEKLK---KGKFTLEDFLEQLEQMK 340 (451)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence 3333333333334445555554443 36799999998877543
No 375
>PHA02335 hypothetical protein
Probab=46.60 E-value=1e+02 Score=21.74 Aligned_cols=31 Identities=6% Similarity=0.217 Sum_probs=25.7
Q ss_pred CCccCHHHHHHHHHhHHHHHHHHHHhccCCC
Q 023338 165 ARKIGPKEFIQVFHSLQNWRAMFEKVDRDRS 195 (283)
Q Consensus 165 ~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~ 195 (283)
-.+|+.+||..-+.+++.++..|+.|..-++
T Consensus 22 p~sVt~ddf~~DlkRi~yIkrllKRy~~~~~ 52 (118)
T PHA02335 22 PQSVTYDDFEEDLKRFKYIKRLFKRYLNTGE 52 (118)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 3568999999999888899999999876654
No 376
>PF05674 DUF816: Baculovirus protein of unknown function (DUF816); InterPro: IPR008534 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf106. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family includes proteins that are about 200 amino acids in length. The proteins are all from baculoviruses. This family includes ORF107 from Orgyia pseudotsugata multicapsid polyhedrosis virus (OpMNPV) and a variety of other numbered ORF proteins, such as ORF52 Q91F03 from SWISSPROT, ORF140 Q9YMI8 from SWISSPROT from other baculoviruses. The function of these proteins is unknown.
Probab=46.18 E-value=1.2e+02 Score=23.13 Aligned_cols=35 Identities=20% Similarity=0.223 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 213 AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 213 ~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
+.+..-.+.+.+.|+..+--+..|+|..|.+.+..
T Consensus 44 ~Pt~~Ny~~iKkLf~qtkYvddsIdyKnfnRr~~l 78 (171)
T PF05674_consen 44 NPTDKNYENIKKLFSQTKYVDDSIDYKNFNRRILL 78 (171)
T ss_pred CCChhhHHHHHHHHHHhhhhhcchhhhhhhhHHHH
Confidence 44444444444444333211245777777665543
No 377
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=46.06 E-value=26 Score=22.80 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=16.1
Q ss_pred HHHHHccCCCCccCHHHHHHHHHhc----CccCCHHHHHHHHH
Q 023338 120 CFQLADRDNSGLIDDKELQGALSSY----NQSFSLRTVRLLMY 158 (283)
Q Consensus 120 ~F~~~d~d~~g~i~~~el~~~l~~~----~~~~~~~~~~~l~~ 158 (283)
+.+.++....-.|-..+|+.++..+ |...+++.+..||+
T Consensus 28 a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs 70 (73)
T PF12631_consen 28 ALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFS 70 (73)
T ss_dssp HHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 3333343333344455566655554 23334444454443
No 378
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.99 E-value=44 Score=29.58 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 212 FAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 212 ~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
..+.+..+-.+++..|.|.| |.++-+||....+.++
T Consensus 472 sklpnsvlgkiwklad~d~d--g~ld~eefala~hli~ 507 (532)
T KOG1954|consen 472 SKLPNSVLGKIWKLADIDKD--GMLDDEEFALANHLIK 507 (532)
T ss_pred ccCchhHHHhhhhhhcCCcc--cCcCHHHHHHHHHHHh
Confidence 34667788899999999986 9999999988766543
No 379
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=45.99 E-value=1.3e+02 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.085 Sum_probs=22.1
Q ss_pred CCCccCHHHHHHHHHhcC-ccCCHHHHHHHHHH
Q 023338 128 NSGLIDDKELQGALSSYN-QSFSLRTVRLLMYT 159 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~~-~~~~~~~~~~l~~~ 159 (283)
.||.++..|+..+...+. ..++.+..+.++..
T Consensus 36 ADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~ 68 (150)
T cd07311 36 GDGVISPEERDWAIGYAAARGGDADMVEELKEY 68 (150)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 378999988765544432 25778888887777
No 380
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=45.92 E-value=2.5e+02 Score=27.08 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=46.0
Q ss_pred HHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCH
Q 023338 137 LQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSP 216 (283)
Q Consensus 137 l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~ 216 (283)
+.++++.+....+.++++... .++.|+||+..-..+. +++.=.....-..-..+.+.+++++..|.+.+|+
T Consensus 195 ~~~al~~lH~P~~~~~~~~~~--------rRL~f~Ell~~ql~l~-~~r~~~~~~~~~~~~~~~~l~~~~~~~LPF~LT~ 265 (677)
T COG1200 195 LDEALRTLHFPKDEEDLKRAR--------RRLAFEELLALQLSLL-LRRAKRQKRSGIPLPANGELLAKFLAALPFKLTN 265 (677)
T ss_pred HHHHHHhccCCCCHHHHHHHH--------HHHHHHHHHHHHHHHH-HHHHHHhhccCCCCCccHHHHHHHHHhCCCCccH
Confidence 566677666666666565433 4578999987765544 2222222222223445556788899999999987
Q ss_pred HHHH
Q 023338 217 VVLD 220 (283)
Q Consensus 217 ~~i~ 220 (283)
+.-+
T Consensus 266 aQ~~ 269 (677)
T COG1200 266 AQKR 269 (677)
T ss_pred HHHH
Confidence 6543
No 381
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.86 E-value=2.8e+02 Score=26.59 Aligned_cols=102 Identities=15% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCC
Q 023338 134 DKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFA 213 (283)
Q Consensus 134 ~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~ 213 (283)
...|+..+...+..++.+.++.|.+..+.+ +..+..+....-.-+.+.|+.+.++++|..
T Consensus 189 ~~~L~~i~~~egi~ie~~AL~~La~~s~Gs----------------lR~al~lLdq~ia~~~~~It~~~V~~~Lg~---- 248 (618)
T PRK14951 189 LEHLTQVLAAENVPAEPQALRLLARAARGS----------------MRDALSLTDQAIAFGSGQLQEAAVRQMLGS---- 248 (618)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHhcCCCcCHHHHHHHHcC----
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-------HHHHHHHhhhc
Q 023338 214 VSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT-------VKGLTEKFKER 258 (283)
Q Consensus 214 ~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~-------~~~~~~~f~~~ 258 (283)
.+++.+..++..+.... ..--++.+..+... +..+...|+..
T Consensus 249 ~~~~~i~~LldaL~~~d---~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~ 297 (618)
T PRK14951 249 VDRSHVFRLIDALAQGD---GRTVVETADELRLNGLSAASTLEEMAAVLQRM 297 (618)
T ss_pred CCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
No 382
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=45.82 E-value=1.5e+02 Score=23.38 Aligned_cols=104 Identities=13% Similarity=0.171 Sum_probs=50.1
Q ss_pred CccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH----------hHHHHHHHHHH--hccCC--C
Q 023338 130 GLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH----------SLQNWRAMFEK--VDRDR--S 195 (283)
Q Consensus 130 g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~----------~~~~~~~~f~~--~D~~~--~ 195 (283)
..|+...+.+.|.. ........++..+..+|-.+ +++++=++.+. .++.+..+|.. +..+. .
T Consensus 49 ~~l~k~~ige~Lg~-~~~~n~~vL~~y~~~fdf~~---~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~ 124 (190)
T PF01369_consen 49 PGLDKKKIGEYLGK-DNPFNRDVLKEYISLFDFSG---MSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNST 124 (190)
T ss_dssp TTS-HHHHHHHHTS-SSHHHHHHHHHHHHTSS-TT---S-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGC
T ss_pred CCCCHHHHHHHHhc-cchHHHHHHHHHHHHcCCcC---ccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCccc
Confidence 45788888888865 22345667777777777543 45665555443 13344444433 23332 3
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 196 GKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 196 G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
...+.+.+..+.-++ |-.--..+..+. ..+++.++|++.++.
T Consensus 125 ~~~~~d~v~~l~~sl--------imLnTdlHn~~~--~~kmt~~~Fi~~~~~ 166 (190)
T PF01369_consen 125 PFKSPDTVYILAYSL--------IMLNTDLHNPNI--KKKMTKEDFIKNTRG 166 (190)
T ss_dssp SSSSHHHHHHHHHHH--------HHHHHHHH-TTS--SSS--HHHHHHHTTT
T ss_pred ccccHhHHHHHHHHH--------HHHhHHHHhhcc--ccCCcHHHHHHHhhc
Confidence 566666655444322 111111122222 135778888777663
No 383
>PF05427 FIBP: Acidic fibroblast growth factor binding (FIBP) ; InterPro: IPR008614 Acidic fibroblast growth factor (aFGF) intracellular binding protein (FIBP) is a protein found mainly in the nucleus that is thought to be involved in the intracellular function of aFGF [].; GO: 0017134 fibroblast growth factor binding
Probab=45.82 E-value=2.1e+02 Score=25.19 Aligned_cols=67 Identities=15% Similarity=0.176 Sum_probs=33.2
Q ss_pred CCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHHHH
Q 023338 194 RSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENF 273 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~ 273 (283)
+.|.....|++.++. +.++++++-+... .++.++...++..+. +.+...+.-....+...++.|
T Consensus 284 a~gLs~sKElRdlF~--------DLvEK~IEPlr~~-----~Wt~~dl~~FL~ay~---~s~~~l~~~r~~~l~~~W~RY 347 (361)
T PF05427_consen 284 ASGLSHSKELRDLFE--------DLVEKFIEPLRQA-----GWTKEDLRLFLSAYT---ESALDLDVFRHQRLQSVWERY 347 (361)
T ss_pred HhcCCccHHHHHHHH--------HHHHHHhHHHHHC-----CCCHHHHHHHHHHHH---HHHHhCCccchHhHHHHHHHH
Confidence 445555555555554 2245555555443 366666666655433 344444443333343445555
Q ss_pred HHH
Q 023338 274 MLA 276 (283)
Q Consensus 274 ~~~ 276 (283)
+..
T Consensus 348 m~v 350 (361)
T PF05427_consen 348 MKV 350 (361)
T ss_pred HHH
Confidence 543
No 384
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=45.80 E-value=31 Score=31.18 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcc-cHHHHHHHHHHH
Q 023338 180 LQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAI-EYDNFIECCLTV 248 (283)
Q Consensus 180 ~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i-~~~eF~~~~~~~ 248 (283)
.+++..++..+|.+ .|+.+.++.++..+ .+.+++..+...-+.+. ..| .-|.|+..+..+
T Consensus 96 ~~ei~~ai~~~d~~---~l~~e~l~~L~~~~---Pt~eE~~~l~~~~~~~~---~~L~~~Eqfl~~l~~i 156 (432)
T smart00498 96 YEEICEAILEGDED---VLSVDLLEQLLKYA---PTKEELKKLREYKEEDP---EELARAEQFLLLISNI 156 (432)
T ss_pred HHHHHHHHHhcChh---hCCHHHHHHHHhhC---cCHHHHHHHHHhcccch---hhcchHHHHHHHHhCC
Confidence 45677777777764 68888888877654 57777776655432211 123 234566555543
No 385
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=45.76 E-value=2e+02 Score=25.23 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=25.0
Q ss_pred CcccHHHHHHHHHHHHHHHHHhh-hcCCCCCceeeeeHHHHHHHhcccc
Q 023338 234 KAIEYDNFIECCLTVKGLTEKFK-ERDTTYSGSATFTYENFMLAVLPFL 281 (283)
Q Consensus 234 g~i~~~eF~~~~~~~~~~~~~f~-~~d~~~~g~i~~~~~~~~~~~~~~~ 281 (283)
..-+.+.|+.++.+-+...-.|- +.-.+..+ +...+.+|+...+.++
T Consensus 290 ~~~~V~~~v~Ll~rH~~~~y~FvH~v~~~d~~-lf~~l~~W~~~~l~~l 337 (341)
T PF12825_consen 290 PFPSVEDFVDLLDRHEQSFYKFVHEVHKNDPE-LFDELIAWIEKILKFL 337 (341)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcChH-HHHHHHHHHHHHHHHH
Confidence 34566777777776444333332 11122222 5566777777766553
No 386
>PF14425 Imm3: Immunity protein Imm3
Probab=45.72 E-value=1.1e+02 Score=22.05 Aligned_cols=39 Identities=5% Similarity=0.103 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcC
Q 023338 220 DLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERD 259 (283)
Q Consensus 220 ~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d 259 (283)
-..++.|+...- .+.++-+|+..+..++..+.+-+.+..
T Consensus 72 ~~~L~~~~~~~~-~~eLt~eE~~dL~~R~nkVL~~l~~~~ 110 (117)
T PF14425_consen 72 TKRLSQFDFEEV-KGELTQEEKEDLSQRINKVLDGLEKVE 110 (117)
T ss_pred HHHHHhcChHHH-HhHhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 334444444332 257888888888777766666555443
No 387
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=45.40 E-value=87 Score=24.95 Aligned_cols=39 Identities=5% Similarity=0.095 Sum_probs=25.3
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
+.+.|.+|+.|.|+...+-.+.+- ...++...+.+..+.
T Consensus 124 V~~af~~dk~G~l~~~rIl~Lrrl---~i~D~~w~~am~aI~ 162 (195)
T PF11363_consen 124 VNRAFQVDKEGNLNTSRILGLRRL---EIDDERWQEAMDAIK 162 (195)
T ss_pred HHHHHhcCCCCCcCHHHHHHHHhc---cCCCHHHHHHHHHHH
Confidence 455678899999999877766543 344455555555553
No 388
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=45.27 E-value=32 Score=26.49 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=14.7
Q ss_pred CHHHHHHHHHhcCccCCHHHHHHHHHHh
Q 023338 133 DDKELQGALSSYNQSFSLRTVRLLMYTF 160 (283)
Q Consensus 133 ~~~el~~~l~~~~~~~~~~~~~~l~~~~ 160 (283)
+..||.++|+.....++..++..+-..+
T Consensus 2 ~~~eL~~~Lk~~~~~~si~DL~~i~~~l 29 (163)
T PF09888_consen 2 TKGELLEILKEEASNYSIYDLMKIRGFL 29 (163)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666666555555555554444433
No 389
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.25 E-value=66 Score=20.78 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=29.6
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
+=.|+++-++.++..+|...++..|..+++...+
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~k 69 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSIIK 69 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 4589999999999999999999999998887643
No 390
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=45.21 E-value=1.2e+02 Score=26.15 Aligned_cols=128 Identities=9% Similarity=-0.030 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccC-HHHHHHHHHhHHHHHHHHHHhc
Q 023338 113 TDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIG-PKEFIQVFHSLQNWRAMFEKVD 191 (283)
Q Consensus 113 ~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~-~~ef~~~~~~~~~~~~~f~~~D 191 (283)
.++.-+++-..+|.-.+-.+...|+..++..++....+...++|....+...+ |+ +.+|...+. +.+.++|..+
T Consensus 174 ~Re~q~~~~~l~~a~~~yq~a~~ey~~~~~~~~~ks~e~~~~~l~~~~~~g~~--v~s~re~~d~W~--~~ae~~~~e~- 248 (320)
T TIGR01834 174 SREMQSQLQRLFRDWMEYQQAMADYQLLEADIGYKSFAALMSDLLARAKSGKP--VKTAKALYDLWV--IAAEEAYAEV- 248 (320)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--chhHHHHHHHHH--HHHHHHHHHH-
Q ss_pred cCCCCccCHHHHHHHHHHcCC------CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhc
Q 023338 192 RDRSGKIDSNELREALMSLGF------AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKER 258 (283)
Q Consensus 192 ~~~~G~i~~~el~~~l~~l~~------~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~ 258 (283)
+..+||.++...+.. .--.+.++.+++.+ +.-|..|+-.+-..|..|+...+.+
T Consensus 249 ------~~S~efak~~G~lvna~m~lr~~~qe~~e~~L~~L-------nlPTRsElDe~~krL~ELrR~vr~L 308 (320)
T TIGR01834 249 ------FASEENAKVHGKFINALMRLRIQQQEIVEALLKML-------NLPTRSELDEAHQRIQQLRREVKSL 308 (320)
T ss_pred ------HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHHHHH
No 391
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=45.08 E-value=91 Score=21.26 Aligned_cols=29 Identities=10% Similarity=0.127 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
|+.++++++-.-....+++++++.+...+
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~l 29 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGDL 29 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 35566666665555666777766666555
No 392
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=45.04 E-value=98 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 198 IDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 198 i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
|+.++++++.+-..+.+++++++.+...+
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~l 31 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQL 31 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 67777777777767777887777776665
No 393
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=44.94 E-value=2e+02 Score=24.70 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=12.7
Q ss_pred CCccCHHHHHHHHHhc
Q 023338 129 SGLIDDKELQGALSSY 144 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~ 144 (283)
+..|+.++|++.|+..
T Consensus 17 ~~yinYk~LKK~lK~~ 32 (310)
T KOG1161|consen 17 DKYINYKELKKLLKQY 32 (310)
T ss_pred hhhcCHHHHHHHHHHh
Confidence 5678888888888775
No 394
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.91 E-value=3e+02 Score=26.70 Aligned_cols=10 Identities=10% Similarity=0.351 Sum_probs=4.3
Q ss_pred ccCHHHHHHH
Q 023338 197 KIDSNELREA 206 (283)
Q Consensus 197 ~i~~~el~~~ 206 (283)
.|+.+.++++
T Consensus 236 ~It~~~V~~~ 245 (700)
T PRK12323 236 NVSEEAVRGM 245 (700)
T ss_pred CcCHHHHHHH
Confidence 4544444333
No 395
>PF04361 DUF494: Protein of unknown function (DUF494); InterPro: IPR007456 Members of this family of uncharacterised proteins are often named Smg.
Probab=44.75 E-value=1.1e+02 Score=23.46 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=32.9
Q ss_pred HHHHHHHHh-ccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 182 NWRAMFEKV-DRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 182 ~~~~~f~~~-D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
-+..+|+.| |.+.+-+.+.+++.+.|...|+ .+++|.+.+.-++
T Consensus 4 VL~yLfE~y~~~~~~~~~d~~~L~~~L~~aGF--~~~eI~~Al~WL~ 48 (155)
T PF04361_consen 4 VLMYLFENYIDFESDACPDQDDLTRELSAAGF--EDEEINKALDWLE 48 (155)
T ss_pred HHHHHHHHHcCCccccCCCHHHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence 355677775 5556788899999999999885 5677877666554
No 396
>PRK03980 flap endonuclease-1; Provisional
Probab=44.61 E-value=2e+02 Score=24.55 Aligned_cols=12 Identities=0% Similarity=-0.128 Sum_probs=5.4
Q ss_pred CHHHHHHHHHHh
Q 023338 149 SLRTVRLLMYTF 160 (283)
Q Consensus 149 ~~~~~~~l~~~~ 160 (283)
+.+.+.++...+
T Consensus 175 ~~~q~id~~iL~ 186 (292)
T PRK03980 175 TREQLIDIAILV 186 (292)
T ss_pred CHHHHHHHHHhc
Confidence 344444444443
No 397
>PRK01844 hypothetical protein; Provisional
Probab=44.49 E-value=61 Score=21.12 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=29.4
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
+=.|+++-++.++..+|...++..|+.+.+..+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~mk 68 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAMN 68 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 448999999999999999999999999988874
No 398
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.13 E-value=47 Score=29.39 Aligned_cols=57 Identities=7% Similarity=0.067 Sum_probs=34.1
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQV 176 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~ 176 (283)
..++|..+.. -+|+|+-..-++.+. ...+....+-+|++..|.+.+|.++-+||..+
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 4455554433 256666555554443 33555667777777777777777777777544
No 399
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=44.13 E-value=1.4e+02 Score=22.69 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCC------CCCccCHHHHHHHHH----hHHH-HHH
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNT------NARKIGPKEFIQVFH----SLQN-WRA 185 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~------~~g~i~~~ef~~~~~----~~~~-~~~ 185 (283)
++.++.... .++.+...++.+.|. ++...+..+++.+... ..+.+.+.++-.... .... +..
T Consensus 12 L~~Iy~l~~--~~~~~~~~diA~~L~-----Vsp~sVt~ml~rL~~~GlV~~~~y~gi~LT~~G~~~a~~~~r~hrlle~ 84 (154)
T COG1321 12 LETIYELLE--EKGFARTKDIAERLK-----VSPPSVTEMLKRLERLGLVEYEPYGGVTLTEKGREKAKELLRKHRLLER 84 (154)
T ss_pred HHHHHHHHh--ccCcccHHHHHHHhC-----CCcHHHHHHHHHHHHCCCeEEecCCCeEEChhhHHHHHHHHHHHHHHHH
Confidence 455554444 578899999888884 4466666666665433 344455554433221 1122 222
Q ss_pred HHH-HhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 186 MFE-KVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 186 ~f~-~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
.+. .+ -++.++..+--..+...++.+.++.|.+.++
T Consensus 85 fL~~~l------g~~~~~~~~ea~~leh~~s~~~~~rl~~~l~ 121 (154)
T COG1321 85 FLVDVL------GLDWEEAHEEAEGLEHALSDETAERLDELLG 121 (154)
T ss_pred HHHHHh------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhC
Confidence 222 12 2444555544445556677777887777775
No 400
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=43.97 E-value=1.3e+02 Score=22.30 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=24.9
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
..+-+.+...+-..-..++-+++|+.-| ++++||++++.....+.
T Consensus 7 ~~A~~FL~~p~V~~sp~~~k~~FL~sKG--Lt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 7 EQAVKFLQDPKVRNSPLEKKIAFLESKG--LTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHCTTTCCCS-HHHHHHHHHHCT----HHHHHHHHHHHT--S
T ss_pred HHHHHHhCCcccccCCHHHHHHHHHcCC--CCHHHHHHHHHhcCCcc
Confidence 3344444444444455666677777644 78888888888876554
No 401
>PRK14134 recX recombination regulator RecX; Provisional
Probab=43.95 E-value=2e+02 Score=24.39 Aligned_cols=44 Identities=9% Similarity=0.177 Sum_probs=30.3
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.-|..||++-|...+ .+.+.|+.++..+... |-|+-+.|...+.
T Consensus 75 ~rSe~Elr~KL~~k~--~~~~~Ie~vI~~L~e~----~yldD~ryA~~yv 118 (283)
T PRK14134 75 YKTEKQIKEKLYLKE--YDEDAVNRVIRFLKEY----NFIDDDKYCDMYI 118 (283)
T ss_pred cchHHHHHHHHHhCC--CCHHHHHHHHHHHHHC----CCCCHHHHHHHHH
Confidence 566777777777654 4667788777777664 4677777766655
No 402
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=43.91 E-value=39 Score=26.49 Aligned_cols=15 Identities=7% Similarity=0.164 Sum_probs=9.5
Q ss_pred CCCCccCHHHHHHHH
Q 023338 163 TNARKIGPKEFIQVF 177 (283)
Q Consensus 163 ~~~g~i~~~ef~~~~ 177 (283)
|.+|.+.+++++..+
T Consensus 29 d~~G~v~v~~Ll~~~ 43 (179)
T PRK00819 29 DEEGWVDIDALIEAL 43 (179)
T ss_pred CCCCCEEHHHHHHHH
Confidence 556777777666554
No 403
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=43.75 E-value=1.1e+02 Score=21.13 Aligned_cols=14 Identities=7% Similarity=0.180 Sum_probs=6.2
Q ss_pred ceeeeeHHHHHHHh
Q 023338 264 GSATFTYENFMLAV 277 (283)
Q Consensus 264 g~i~~~~~~~~~~~ 277 (283)
|.++-.+++++..+
T Consensus 88 G~~~~~E~~~l~~i 101 (106)
T cd07316 88 GELSEAERELLRRI 101 (106)
T ss_pred CCCCHHHHHHHHHH
Confidence 44444444444433
No 404
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=43.58 E-value=92 Score=27.63 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=48.8
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH---HHHHHHHHHhccCCCC---ccCHHH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL---QNWRAMFEKVDRDRSG---KIDSNE 202 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~---~~~~~~f~~~D~~~~G---~i~~~e 202 (283)
...+.+.+|+.+|....-..+--++-.|...+|-..++.|+.-||-.+.+.. ..+..-|+.+-...-| .++.+|
T Consensus 188 k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTYDE 267 (563)
T KOG1785|consen 188 KTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTYDE 267 (563)
T ss_pred cccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeHHH
Confidence 4567888888888776433333444555566777777777766665544322 2333344444444444 467788
Q ss_pred HHHHHHH
Q 023338 203 LREALMS 209 (283)
Q Consensus 203 l~~~l~~ 209 (283)
++..|..
T Consensus 268 Vk~RLqk 274 (563)
T KOG1785|consen 268 VKARLQK 274 (563)
T ss_pred HHHHHHH
Confidence 8887765
No 405
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=43.35 E-value=1.7e+02 Score=23.46 Aligned_cols=10 Identities=20% Similarity=0.933 Sum_probs=4.9
Q ss_pred cHHHHHHHHH
Q 023338 237 EYDNFIECCL 246 (283)
Q Consensus 237 ~~~eF~~~~~ 246 (283)
+++-.+.+|.
T Consensus 103 d~~~lv~~ck 112 (205)
T PF12238_consen 103 DYNGLVKFCK 112 (205)
T ss_pred cHHHHHHHHH
Confidence 5555444444
No 406
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=43.33 E-value=20 Score=25.68 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=31.8
Q ss_pred CCCCccCHHHHHH-HHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 193 DRSGKIDSNELRE-ALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 193 ~~~G~i~~~el~~-~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
+..+-+..+|.+. +|..+ ....|+++++.+++.+. ..+-+.+|...+
T Consensus 73 e~~~~~~~~EY~~~lld~v----l~~~lKd~vKqLKKAR~--d~~mk~~f~~V~ 120 (121)
T PF11269_consen 73 EDMEEEEEQEYRAQLLDRV----LHNCLKDMVKQLKKARR--DPSMKNSFKEVF 120 (121)
T ss_dssp HTTTTS-HHHHHH-HHHHH----HHTHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcc--CHHHHHHHHHHh
Confidence 4567788888888 66664 44557788877776663 567788887664
No 407
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=43.29 E-value=1.4e+02 Score=29.18 Aligned_cols=28 Identities=7% Similarity=0.172 Sum_probs=17.9
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHH
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALS 142 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~ 142 (283)
+.++++|+.+..+....|=++|+..++.
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~ 288 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVG 288 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhc
Confidence 4677777766555455566677776654
No 408
>COG1298 FlhA Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.98 E-value=3.2e+02 Score=26.37 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=19.7
Q ss_pred ccCCCCccCHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 023338 191 DRDRSGKIDSNELREALMSL-GFAVSPVVLDLLVTKF 226 (283)
Q Consensus 191 D~~~~G~i~~~el~~~l~~l-~~~~~~~~i~~l~~~~ 226 (283)
|.-..+.|+..++..+|+.| .+..+-.++..+++..
T Consensus 524 Eei~p~~is~s~iqkVLq~LL~E~VsIRdl~tIlEtl 560 (696)
T COG1298 524 EEIVPKKISLSTLQKVLQNLLKERVSIRDLPTILETL 560 (696)
T ss_pred HHhccCccCHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 33344567777777777764 3344444444444444
No 409
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=42.92 E-value=1.7e+02 Score=23.22 Aligned_cols=15 Identities=33% Similarity=0.487 Sum_probs=10.0
Q ss_pred cCHHHHHHHHHHcCC
Q 023338 198 IDSNELREALMSLGF 212 (283)
Q Consensus 198 i~~~el~~~l~~l~~ 212 (283)
|...|-.++|+++|+
T Consensus 129 iGyKEASHFLRNVG~ 143 (210)
T COG1059 129 IGYKEASHFLRNVGF 143 (210)
T ss_pred ccHHHHHHHHHhcCh
Confidence 555666677777766
No 410
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=42.90 E-value=40 Score=24.35 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHhcCccCCHHHHHHHHHHhcC----CCCCccCHHHHHHHHH------hHHHHHHHHHHhccCCCCccCHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTVRLLMYTFTN----TNARKIGPKEFIQVFH------SLQNWRAMFEKVDRDRSGKIDSN 201 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~----~~~g~i~~~ef~~~~~------~~~~~~~~f~~~D~~~~G~i~~~ 201 (283)
.+++||..-|..| .+-...++.-+..-.. ..+..|+-.+=..++. .....+.+-..+.++-...++.+
T Consensus 3 ~t~EeLaaeL~kL--qmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe~kVr~~t~~~vTk~ 80 (118)
T PF05812_consen 3 MTMEELAAELQKL--QMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIEAKVRKLTAKLVTKE 80 (118)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--BHH
T ss_pred CCHHHHHHHHHHH--HHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHH
Q ss_pred HHHHHHHHcCCCCC
Q 023338 202 ELREALMSLGFAVS 215 (283)
Q Consensus 202 el~~~l~~l~~~~~ 215 (283)
|+.++|..+.++++
T Consensus 81 e~~e~l~~l~~Ri~ 94 (118)
T PF05812_consen 81 EIEEALKNLTIRID 94 (118)
T ss_dssp HHHHHHHT-EEEEE
T ss_pred HHHHHHhcceeeEE
No 411
>TIGR02933 nifM_nitrog nitrogen fixation protein NifM. Members of this protein family, found in a subset of nitrogen-fixing bacteria, are the nitrogen fixation protein NifM. NifM, homologous to peptidyl-prolyl cis-trans isomerases, appears to be an accessory protein for NifH, the Fe protein, also called component II or dinitrogenase reductase, of nitrogenase.
Probab=42.87 E-value=2e+02 Score=23.93 Aligned_cols=74 Identities=8% Similarity=0.023 Sum_probs=42.2
Q ss_pred cCHHHHHHHHHhcCccCCHHHH----HHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHH
Q 023338 132 IDDKELQGALSSYNQSFSLRTV----RLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREAL 207 (283)
Q Consensus 132 i~~~el~~~l~~~~~~~~~~~~----~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l 207 (283)
|..+-+......++..++++++ ..+...+... .+++++|...+...-.+..++...-.. .-.|+.+|++..+
T Consensus 36 I~e~l~lq~A~~~gi~v~~~ev~~~~e~~~~~L~~~---G~~~~~~r~~ir~~i~~~~~~~~~~~~-~i~ise~ei~~yy 111 (256)
T TIGR02933 36 HIEQAVVRAADEIGVVIPPSLLEEAPQALAQALDEQ---ALDAAERRAMLAHHLRLEAQLACVCAQ-APQPDDADVEAWY 111 (256)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCHHHHHHHH
Confidence 3333344445567788888888 4444444443 278888887766533344444332222 2356777777776
Q ss_pred HH
Q 023338 208 MS 209 (283)
Q Consensus 208 ~~ 209 (283)
..
T Consensus 112 ~~ 113 (256)
T TIGR02933 112 RR 113 (256)
T ss_pred HH
Confidence 54
No 412
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=42.76 E-value=2.7e+02 Score=28.03 Aligned_cols=13 Identities=0% Similarity=0.212 Sum_probs=9.4
Q ss_pred ccCHHHHHHHHHh
Q 023338 131 LIDDKELQGALSS 143 (283)
Q Consensus 131 ~i~~~el~~~l~~ 143 (283)
.||...|..+++-
T Consensus 767 ~iT~RqLEsLIRL 779 (915)
T PTZ00111 767 YVSSRMISSIIRI 779 (915)
T ss_pred cccHHHHHHHHHH
Confidence 4788888877654
No 413
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=42.62 E-value=1.7e+02 Score=23.31 Aligned_cols=44 Identities=27% Similarity=0.540 Sum_probs=22.7
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhh---hcCCCCCceeeeeHHHHHHH
Q 023338 233 SKAIEYDNFIECCLTVKGLTEKFK---ERDTTYSGSATFTYENFMLA 276 (283)
Q Consensus 233 ~g~i~~~eF~~~~~~~~~~~~~f~---~~d~~~~g~i~~~~~~~~~~ 276 (283)
+..|+|.-|+..+-.+-.+..-++ ..+-.++....+.++.|+..
T Consensus 148 skTInYsFfLDkIf~i~~vt~NLkPqtvKny~knn~nqLiWenfl~~ 194 (225)
T PHA03074 148 SKTINYSFFLDKIFDITNVTKNLKPQTVKNYTKNNSNQLIWENFLIH 194 (225)
T ss_pred CceEeehhhHHHHHHHHhhhcccCchhhhccccCCchhhhHHHHHHH
Confidence 457888888776665543333222 11112233344567776653
No 414
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=42.61 E-value=1.2e+02 Score=21.44 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.4
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
.|+.+.+..+|+..|..+....+..+++.+.
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~ 46 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALE 46 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHc
Confidence 8999999999999998888888888888883
No 415
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=42.59 E-value=1.1e+02 Score=20.79 Aligned_cols=50 Identities=20% Similarity=0.021 Sum_probs=33.6
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH 178 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~ 178 (283)
...|...+|+..|...-......+...|...+|-..++.|+.=||-.+.+
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtR 69 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTR 69 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHH
Confidence 35688889988887754444445556677778888888888888766654
No 416
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=42.49 E-value=1.6e+02 Score=24.07 Aligned_cols=28 Identities=7% Similarity=0.017 Sum_probs=19.9
Q ss_pred HHHHHhcCccCCHHHHHHHHHHhcCCCC
Q 023338 138 QGALSSYNQSFSLRTVRLLMYTFTNTNA 165 (283)
Q Consensus 138 ~~~l~~~~~~~~~~~~~~l~~~~d~~~~ 165 (283)
...|+.+|...+++++....+.+....+
T Consensus 154 ~~~l~~lgvPY~~~~i~~a~~~~~~qa~ 181 (226)
T PF02433_consen 154 MKALRTLGVPYTDEEIANAPADVEGQAK 181 (226)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhccc
Confidence 4456678888999888877777655443
No 417
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=42.48 E-value=1.2e+02 Score=21.25 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC-CCCCcccHHHHHHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG-GKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~-d~~g~i~~~eF~~~~~~~~ 249 (283)
..-|..+-. +|.|..++|-+.+. ..-+.+...+|+..+.... .....|+.+|+..++..+.
T Consensus 33 E~RFd~La~--dG~L~rs~Fg~CIG---M~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 33 EKRFDKLAK--DGLLPRSDFGECIG---MKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHH-B--TTBEEGGGHHHHHT-----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHhCc--CCcccHHHHHHhcC---CcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 444555544 78999988888774 2335666666666543221 1135799999888888764
No 418
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=42.32 E-value=46 Score=21.44 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHh
Q 023338 200 SNELREALMSLGFAVSP-VVLDLLVTKFD 227 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~~-~~i~~l~~~~d 227 (283)
.+.|++++..+...+++ +++..+...+|
T Consensus 16 ~eTLEkv~e~~~y~L~~~~e~~~f~~AaD 44 (71)
T PRK10391 16 LESLEKLFDHLNYTLTDDQEIINMYRAAD 44 (71)
T ss_pred HHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 34445555554444443 55555554444
No 419
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.24 E-value=3.1e+02 Score=26.04 Aligned_cols=91 Identities=9% Similarity=0.116 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHhc----CccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHH
Q 023338 131 LIDDKELQGALSSY----NQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREA 206 (283)
Q Consensus 131 ~i~~~el~~~l~~~----~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~ 206 (283)
.++..++..++... +..++.+.+..|....+.+ +..+....+.+..-..+.|+.+.++.+
T Consensus 178 ~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gd----------------lr~al~~LekL~~y~~~~It~e~V~~l 241 (585)
T PRK14950 178 RHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGS----------------MRDAENLLQQLATTYGGEISLSQVQSL 241 (585)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC----------------HHHHHHHHHHHHHhcCCCCCHHHHHHH
Q ss_pred HHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 207 LMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 207 l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
+.. ..+..+.+++..+ ..-+....++++..+
T Consensus 242 l~~----s~~~~vf~Lidal-------~~~d~~~al~~l~~L 272 (585)
T PRK14950 242 LGI----SGDEEVKALAEAL-------LAKDLKAALRTLNAV 272 (585)
T ss_pred hcC----CCHHHHHHHHHHH-------HcCCHHHHHHHHHHH
No 420
>PF09808 SNAPc_SNAP43: Small nuclear RNA activating complex (SNAPc), subunit SNAP43; InterPro: IPR019188 Members of this family are part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. They bind to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Furthermore, they also recruit TBP and BRF2 to the U6 snRNA TATA box. SNAPc consists of at least four stably associated subunits, SNAP43, SNAP45, SNAP50, and SNAP190. None of the three small subunits can bind to the PSE on their own [].
Probab=42.21 E-value=1.7e+02 Score=23.10 Aligned_cols=28 Identities=11% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 151 RTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 151 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
+++++|+..+-.. ..++|++|..+|+.+
T Consensus 4 ~D~~~Ll~~F~~~--~~~~F~~F~~~W~~~ 31 (194)
T PF09808_consen 4 EDIDELLQRFQQA--ESVRFEDFKRLWREM 31 (194)
T ss_pred HHHHHHHHHHHHc--CCCCHHHHHHHHHHC
Confidence 5667777776544 558899999998864
No 421
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=42.19 E-value=1.4e+02 Score=21.95 Aligned_cols=31 Identities=16% Similarity=0.265 Sum_probs=20.1
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHh
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTF 160 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 160 (283)
.+.++..|+.+.|... ..++...+..+++.+
T Consensus 16 ~~~~t~~eI~~~l~~~-~~~~~tTv~T~L~rL 46 (130)
T TIGR02698 16 LGETTSRDIIRILAEK-KDWSDSTIKTLLGRL 46 (130)
T ss_pred CCCCCHHHHHHHHhhc-cCCcHHHHHHHHHHH
Confidence 3457888988887532 235566777666655
No 422
>PF14423 Imm5: Immunity protein Imm5
Probab=42.18 E-value=59 Score=25.55 Aligned_cols=29 Identities=7% Similarity=-0.078 Sum_probs=14.3
Q ss_pred HHHHHHHHccCCCCccCHHHHHHHHHhcC
Q 023338 117 IVACFQLADRDNSGLIDDKELQGALSSYN 145 (283)
Q Consensus 117 l~~~F~~~d~d~~g~i~~~el~~~l~~~~ 145 (283)
|.++-..+..+..|.+...--+++++.++
T Consensus 3 Iekl~~eI~~s~~GhL~Lp~R~~l~r~ig 31 (183)
T PF14423_consen 3 IEKLKEEINQSPEGHLSLPLRVKLWRAIG 31 (183)
T ss_pred HHHHHHHHHcCCCCccCchHHHHHHHHhC
Confidence 34444445555555555554444444443
No 423
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=42.01 E-value=85 Score=20.48 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=18.2
Q ss_pred HHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 172 EFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 172 ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
+++.++.....+|.+...-+.+.++.|+.+.|++++-.
T Consensus 30 eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pq 67 (72)
T PF09415_consen 30 EYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILPQ 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 33334333333344443444443445888888887654
No 424
>cd08306 Death_FADD Fas-associated Death Domain protein-protein interaction domain. Death domain (DD) found in FAS-associated via death domain (FADD). FADD is a component of the death-inducing signaling complex (DISC) and serves as an adaptor in the signaling pathway of death receptor proteins. It modulates apoptosis as well as non-apoptotic processes such as cell cycle progression, survival, innate immune signaling, and hematopoiesis. FADD contains an N-terminal DED and a C-terminal DD. Its DD interacts with the DD of the activated death receptor, FAS, and its DED recruits the initiator caspases, caspase-8 and -10, to the DISC complex via a homotypic interaction with the N-terminal DED of the caspase. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain),
Probab=41.99 E-value=1e+02 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=12.9
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPVVL 219 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i 219 (283)
.-+.+.|.+.|..++.+...+.|
T Consensus 59 ~At~~~L~~aL~~~~l~~~ad~i 81 (86)
T cd08306 59 EAKVADLIKALRDCQLNLVADLV 81 (86)
T ss_pred chHHHHHHHHHHHcCcHHHHHHH
Confidence 34556677777776654433333
No 425
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=41.95 E-value=1.2e+02 Score=21.43 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=34.1
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHH
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVF 177 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~ 177 (283)
.||.+.+..+|...+..+....++.+.+.+.. .++++.+...
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa~~ 57 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIKKA 57 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhc
Confidence 79999999999999999989899988888854 4566666543
No 426
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=41.91 E-value=16 Score=26.50 Aligned_cols=29 Identities=14% Similarity=0.132 Sum_probs=17.9
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
.|+.++++-+....+ .+.+++.+.+...+
T Consensus 82 ~i~eeDIkLV~eQa~--VsreeA~kAL~e~~ 110 (122)
T COG1308 82 DISEEDIKLVMEQAG--VSREEAIKALEEAG 110 (122)
T ss_pred CCCHHHHHHHHHHhC--CCHHHHHHHHHHcC
Confidence 477777777776654 45566555555543
No 427
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=41.90 E-value=1e+02 Score=29.47 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
..++++|-++|.- |.-+-|.++++..
T Consensus 405 s~LR~iFLktDNy----I~GeYlAei~Kev 430 (768)
T KOG1096|consen 405 SRLREIFLKTDNY----INGEYLAEILKEV 430 (768)
T ss_pred HHHHHHHHhhccc----cchhhHHHHHHHH
Confidence 4677888777654 4445555555544
No 428
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=41.84 E-value=1.7e+02 Score=22.98 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=19.3
Q ss_pred ccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCC
Q 023338 131 LIDDKELQGALSSYNQSFSLRTVRLLMYTFTNT 163 (283)
Q Consensus 131 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~ 163 (283)
.++...+.+.|.. ......+.++..++.++-.
T Consensus 47 ~l~k~~ig~~l~~-~~~~~~~vL~~y~~~f~f~ 78 (187)
T smart00222 47 GLNKKAIGDYLGE-HDEFNRLVLHAFVDLFDFS 78 (187)
T ss_pred CCCHHHHHHHHcC-CChHHHHHHHHHHHhcCcC
Confidence 5677777777753 2344556666666666643
No 429
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=41.83 E-value=2e+02 Score=30.71 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=58.5
Q ss_pred HHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhH---------HHHHHHHHHhccCCCCccCHHHHHHHH
Q 023338 137 LQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSL---------QNWRAMFEKVDRDRSGKIDSNELREAL 207 (283)
Q Consensus 137 l~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~---------~~~~~~f~~~D~~~~G~i~~~el~~~l 207 (283)
++.+|..... .-++.+++|++.++. .+|-+.|+..++..+ +.+..+.+.+-.+.. .....+|..+|
T Consensus 794 l~nIL~Gy~~-~l~~~~~~li~~Lr~---p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~~~~~~~s~~t-~FPakql~~il 868 (2196)
T KOG0368|consen 794 LENILAGYDP-KLDETVQELIKVLRD---PELPYLEWQEHISALANRLPPNLDKSLESLVAKSASRIT-QFPAKQLAKIL 868 (2196)
T ss_pred HHHHHhccCc-chhHHHHHHHHHhcC---CCcChHHHHHHHHHHhccCChhHHHHHHHHHHHHhhhcc-cCcHHHHHHHH
Confidence 4555553332 235566777766543 567777777766532 234444444444432 66777777777
Q ss_pred HHcCCCC--CHH-----HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcC
Q 023338 208 MSLGFAV--SPV-----VLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERD 259 (283)
Q Consensus 208 ~~l~~~~--~~~-----~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d 259 (283)
..-...+ ++. .++-|++.+....++......+-|..++...-+++..|...|
T Consensus 869 ~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~~~~ 927 (2196)
T KOG0368|consen 869 DAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFNGRD 927 (2196)
T ss_pred HHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 6532111 111 123333333333221123444556666665555556665333
No 430
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=41.53 E-value=2.1e+02 Score=23.99 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=4.2
Q ss_pred hHHHHHHHH
Q 023338 116 NIVACFQLA 124 (283)
Q Consensus 116 ~l~~~F~~~ 124 (283)
.+-+.|+.+
T Consensus 12 ~iie~f~~~ 20 (313)
T KOG1466|consen 12 SIIEYFLSF 20 (313)
T ss_pred hHHHHHHHH
Confidence 344555533
No 431
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=41.40 E-value=91 Score=19.67 Aligned_cols=30 Identities=13% Similarity=0.217 Sum_probs=11.4
Q ss_pred ccCHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 023338 197 KIDSNELREALMSL-GFAVSPVVLDLLVTKF 226 (283)
Q Consensus 197 ~i~~~el~~~l~~l-~~~~~~~~i~~l~~~~ 226 (283)
.++.+|.+.++..+ ....++..+-.++..+
T Consensus 14 ~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 14 DLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp ---HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45555555555443 2233444444444443
No 432
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=41.33 E-value=1.9e+02 Score=23.28 Aligned_cols=8 Identities=0% Similarity=0.065 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 023338 202 ELREALMS 209 (283)
Q Consensus 202 el~~~l~~ 209 (283)
+++...+.
T Consensus 85 ~~~~YyKk 92 (205)
T PF12238_consen 85 KMTKYYKK 92 (205)
T ss_pred HHHHHHHH
Confidence 34444443
No 433
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=41.31 E-value=1.3e+02 Score=22.06 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=31.4
Q ss_pred ccCHHHHHHHHHhHH--HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 167 KIGPKEFIQVFHSLQ--NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 167 ~i~~~ef~~~~~~~~--~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
.+++++++.|+..+. ++.-.|..+. .+|.++.+|+.+.|. ++.+.+...++..
T Consensus 12 ~~~~~dvl~c~~GLs~~Dv~v~~~LL~--~~~~~tvdelae~ln-----r~rStv~rsl~~L 66 (126)
T COG3355 12 EFRCEDVLKCVYGLSELDVEVYKALLE--ENGPLTVDELAEILN-----RSRSTVYRSLQNL 66 (126)
T ss_pred cCcHHHHHHHHhCCcHHHHHHHHHHHh--hcCCcCHHHHHHHHC-----ccHHHHHHHHHHH
Confidence 466777777776442 2333333333 567788888888775 4566666555543
No 434
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=41.21 E-value=1.3e+02 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHH
Q 023338 214 VSPVVLDLLVTKF 226 (283)
Q Consensus 214 ~~~~~i~~l~~~~ 226 (283)
++++++..++..+
T Consensus 99 msd~el~~~l~~~ 111 (129)
T PF13543_consen 99 MSDEELKEILNRC 111 (129)
T ss_pred CCHHHHHHHHHHh
Confidence 4556666666554
No 435
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=41.17 E-value=42 Score=20.40 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=12.0
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLL 222 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l 222 (283)
.|.|+.+||.+-+...-.-.+..++..+
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l 48 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDAL 48 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3455555555544443222333344333
No 436
>KOG4654 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.93 E-value=1.8e+02 Score=22.94 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=13.1
Q ss_pred HHHHHHHHHhccCCCCcc-CHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKI-DSNELREA 206 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i-~~~el~~~ 206 (283)
+-+.++|..|=.++|-.+ ..+|+.++
T Consensus 102 ~lIldlf~mfIs~GDafl~~pde~ddL 128 (252)
T KOG4654|consen 102 ELILDLFAMFISNGDAFLIRPDELDDL 128 (252)
T ss_pred HHHHHHHHHHHhCCCeeeeCchHHHHH
Confidence 345556666666665433 33344433
No 437
>PF02337 Gag_p10: Retroviral GAG p10 protein; InterPro: IPR003322 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from beta-retroviruses such as Mason-Pfizer monkey virus (MPMV) (Simian Mason-Pfizer virus) and Mouse mammary tumor virus (MMTV) [, ]. This entry also identifies matrix proteins from several eukaryotic endogenous retroviruses, which arise when one or more copies of the retroviral genome becomes integrated into the host genome [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 2F77_X 2F76_X.
Probab=40.86 E-value=1.2e+02 Score=20.83 Aligned_cols=47 Identities=19% Similarity=0.201 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhCC---CCCCcccHHHHHHHHHHH
Q 023338 202 ELREALMSLGFAVSPVVLDLLVTKFDKTG---GKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 202 el~~~l~~l~~~~~~~~i~~l~~~~d~~~---d~~g~i~~~eF~~~~~~~ 248 (283)
.|+.+|+.-|..++.+++..++..++.-. -.+|.|+.+.+.+.-..+
T Consensus 13 ~Lk~lLk~rGi~v~~~~L~~f~~~i~~~~PWF~~eG~l~~~~W~kvG~~l 62 (90)
T PF02337_consen 13 ILKHLLKERGIRVKKKDLINFLSFIDKVCPWFPEEGTLDLDNWKKVGEEL 62 (90)
T ss_dssp HHHHHHHCCT----HHHHHHHHHHHHHHTT-SS--SS-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCeeecHHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHH
Confidence 35566666677788888877777765432 013678888887775554
No 438
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.69 E-value=1.5e+02 Score=24.01 Aligned_cols=17 Identities=6% Similarity=0.094 Sum_probs=11.0
Q ss_pred CCccCHHHHHHHHHhcC
Q 023338 129 SGLIDDKELQGALSSYN 145 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~ 145 (283)
++.|+++....+|+.+|
T Consensus 132 ~~iV~vetAiaml~dmG 148 (236)
T TIGR03581 132 EAIVPIETAIAMLKDMG 148 (236)
T ss_pred CceeeHHHHHHHHHHcC
Confidence 45667776666666654
No 439
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=40.59 E-value=42 Score=26.51 Aligned_cols=14 Identities=0% Similarity=0.136 Sum_probs=5.1
Q ss_pred CCCCccCHHHHHHH
Q 023338 163 TNARKIGPKEFIQV 176 (283)
Q Consensus 163 ~~~g~i~~~ef~~~ 176 (283)
+.+|.+.++|++..
T Consensus 28 d~~G~v~v~dLL~~ 41 (186)
T PF01885_consen 28 DPDGWVSVDDLLRA 41 (186)
T ss_dssp -TT--EEHHHHHHH
T ss_pred CCCCCEeHHHHHHH
Confidence 33455555544443
No 440
>PF07261 DnaB_2: Replication initiation and membrane attachment; InterPro: IPR006343 This entry represents a domain found in several bacterial replication initiation and membrane attachment proteins, DnaB and DnaD. The DnaD protein is a component of the PriA primosome. The PriA primosome functions to recruit the replication fork helicase onto the DNA []. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria []. The DnaB protein is essential for both replication initiation and membrane attachment of the origin region of the chromosome and Plasmid pUB110 in Bacillus subtilis. It is known that there are two different classes (DnaBI and DnaBII) in the DnaB mutants; DnaBI is essential for both chromosome and pUB110 replication, whereas DnaBII is necessary only for chromosome replication []. This domain tends to be found towards the C terminus of DnaB and DnaD proteins and is alpha helical in nature.; PDB: 2I5U_A 2ZC2_A.
Probab=40.43 E-value=99 Score=19.83 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHhccCCCCccCHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhC
Q 023338 186 MFEKVDRDRSGKIDSNELREALMSLG-FAVSPVVLDLLVTKFDKT 229 (283)
Q Consensus 186 ~f~~~D~~~~G~i~~~el~~~l~~l~-~~~~~~~i~~l~~~~d~~ 229 (283)
+|+.+..+..+.++..|.+.+..-+. ..++.+.|..+++.+-..
T Consensus 1 ~~~~~e~~~~~~~s~~e~~~l~~~~~~~~~~~~~v~~ai~~~~~~ 45 (77)
T PF07261_consen 1 LFEFYEKNFGRPPSPSEIEKLEKWIDDYGFSPEVVNEAIEYALEN 45 (77)
T ss_dssp HHHHHHCCCTSS--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 35666677778888888777776554 256677777777777643
No 441
>PF05435 Phi-29_GP3: Phi-29 DNA terminal protein GP3; InterPro: IPR008770 This family consists of DNA terminal protein Gp3 sequences from phi-29 like bacteriophage. DNA terminal protein Gp3 is linked to the 5' ends of both strands of the genome through a phosphodiester bond between the beta-hydroxyl group of a serine residue and the 5'-phosphate of the terminal deoxyadenylate. This protein is essential for DNA replication and is involved in the priming of DNA elongation [].; GO: 0006260 DNA replication, 0006269 DNA replication, synthesis of RNA primer, 0018142 protein-DNA covalent cross-linking; PDB: 2EX3_D.
Probab=40.37 E-value=45 Score=26.50 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 023338 200 SNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCL 246 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~ 246 (283)
.+||..-|+. +..++.-+++..+ ..|+|++|-.-..
T Consensus 200 aDelve~Lkk----iPpDDFyElfli~-------~EISFE~FDSEg~ 235 (266)
T PF05435_consen 200 ADELVEKLKK----IPPDDFYELFLIY-------NEISFENFDSEGA 235 (266)
T ss_dssp HHHHHHHHHT----S-HHHHHHHHHHH-------TTT----------
T ss_pred HHHHHHHHhc----CCchHHHHHHHHH-------hhhhhhhcccccc
Confidence 3556666655 3567777788777 3588888855433
No 442
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=40.35 E-value=32 Score=34.94 Aligned_cols=8 Identities=0% Similarity=-0.097 Sum_probs=4.8
Q ss_pred hhHHHHHH
Q 023338 115 PNIVACFQ 122 (283)
Q Consensus 115 ~~l~~~F~ 122 (283)
+.++++.+
T Consensus 87 eHLrki~~ 94 (2365)
T COG5178 87 EHLRKIQS 94 (2365)
T ss_pred HHHHhhhC
Confidence 55666654
No 443
>COG1421 CRISPR system related protein [Defense mechanisms]
Probab=40.21 E-value=1.5e+02 Score=21.96 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=23.0
Q ss_pred hhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHh
Q 023338 115 PNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTF 160 (283)
Q Consensus 115 ~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 160 (283)
+.++.++...+....-.++.......+.... +++...++.+++..
T Consensus 12 Ed~e~~v~~~~~e~~~~~d~a~~~~~~~~~~-~l~~~q~R~fy~~~ 56 (137)
T COG1421 12 EDIELRVSKNSQEAGRILDIALNLAAFFKAI-NLTTTQLRKFYDYI 56 (137)
T ss_pred hHHHHHHHHHHHhccchhhHHHHHHHHHHHh-cCcHHHHHHHHHHH
Confidence 3455555544444333344433333333222 66777788877776
No 444
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.10 E-value=2.8e+02 Score=28.01 Aligned_cols=10 Identities=0% Similarity=0.119 Sum_probs=4.5
Q ss_pred CCHHHHHHHH
Q 023338 148 FSLRTVRLLM 157 (283)
Q Consensus 148 ~~~~~~~~l~ 157 (283)
++.+++...+
T Consensus 178 Ls~eEI~~~L 187 (944)
T PRK14949 178 LTQDEIGTQL 187 (944)
T ss_pred CCHHHHHHHH
Confidence 3455554333
No 445
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=40.04 E-value=21 Score=33.56 Aligned_cols=62 Identities=6% Similarity=0.076 Sum_probs=42.4
Q ss_pred HHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHH---------HHHHHHHhcCCCC-----------------------
Q 023338 118 VACFQLADRDNSGLIDDKELQGALSSYNQSFSLRT---------VRLLMYTFTNTNA----------------------- 165 (283)
Q Consensus 118 ~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~---------~~~l~~~~d~~~~----------------------- 165 (283)
+++|..+|.+.++.++..++.++..+++..+.... ...+++.+|.+++
T Consensus 440 ~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s~ 519 (975)
T KOG2419|consen 440 KRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKSF 519 (975)
T ss_pred hhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhcccccccccc
Confidence 34555678888888888888877777654332222 3445556666665
Q ss_pred CccCHHHHHHHHHh
Q 023338 166 RKIGPKEFIQVFHS 179 (283)
Q Consensus 166 g~i~~~ef~~~~~~ 179 (283)
+.++.+|.+.++..
T Consensus 520 ~~vtVDe~v~ll~~ 533 (975)
T KOG2419|consen 520 GVVTVDELVALLAL 533 (975)
T ss_pred CeeEHHHHHHHHHH
Confidence 88999999988763
No 446
>KOG2091 consensus Predicted member of glycosyl hydrolase family 18 [Carbohydrate transport and metabolism]
Probab=40.02 E-value=2.5e+02 Score=24.33 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=45.4
Q ss_pred CCCccCHHHHHHHHHHc----------------CCCCCHHHHHHHHHHHhhC--------------------CCCCCccc
Q 023338 194 RSGKIDSNELREALMSL----------------GFAVSPVVLDLLVTKFDKT--------------------GGKSKAIE 237 (283)
Q Consensus 194 ~~G~i~~~el~~~l~~l----------------~~~~~~~~i~~l~~~~d~~--------------------~d~~g~i~ 237 (283)
..+.++.+|+..+...+ +-+...+-|+..+..++.. +|+-+.|+
T Consensus 237 ~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~~pg~nap~~wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gdg~~~IT 316 (392)
T KOG2091|consen 237 QLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQGPGPNAPLEWIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGDGGEAIT 316 (392)
T ss_pred CcCcCCHHHHHHHHHhhhheeEEEeecccccCCCCCCCHHHHHHHHHHhCCccccccceeEeeeccccccccCCCCCcee
Confidence 34567888888877642 1123345555555443322 23346799
Q ss_pred HHHHHHHHHHHH-------HHHHHhhhcCCCCCceeee
Q 023338 238 YDNFIECCLTVK-------GLTEKFKERDTTYSGSATF 268 (283)
Q Consensus 238 ~~eF~~~~~~~~-------~~~~~f~~~d~~~~g~i~~ 268 (283)
...|+.++...+ +..+.|-.+.++.+|.-.+
T Consensus 317 ~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhiv 354 (392)
T KOG2091|consen 317 AKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIV 354 (392)
T ss_pred HHHHHHHHhccCcceeeccccchhheeeeccCCCceEE
Confidence 999999988532 4556676777666665544
No 447
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.81 E-value=2e+02 Score=23.18 Aligned_cols=96 Identities=16% Similarity=0.251 Sum_probs=49.3
Q ss_pred ccCCCCccCHHHHHHHHHhcCcc-CCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHH--hccCCCCccCHH
Q 023338 125 DRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEK--VDRDRSGKIDSN 201 (283)
Q Consensus 125 d~d~~g~i~~~el~~~l~~~~~~-~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~--~D~~~~G~i~~~ 201 (283)
....||.||..|-..++..+... .+.+.-.-|.+.+.. -|+.++......+.+...++|.. +-.|.+......
T Consensus 120 AAkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~----PlD~~~ia~~a~~ee~a~ElY~ASrl~id~d~r~Er~ 195 (225)
T COG2979 120 AAKADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQ----PLDPDEIAAAARNEEQALELYLASRLAIDDDSRMERS 195 (225)
T ss_pred HHhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhC----CCCHHHHHHHhcCHHHHHHHHHHHHHhcCchhHHHHH
Confidence 33458999999998888554322 223333333333432 37888888888765443333322 112222333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 202 ELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 202 el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
-|..+-..|+ +.++.++.|-..+
T Consensus 196 YL~~La~~L~--L~dalvd~lE~qv 218 (225)
T COG2979 196 YLNALAGALG--LPDALVDHLERQV 218 (225)
T ss_pred HHHHHHHHhC--CCHHHHHHHHHHH
Confidence 3333333333 4555555554443
No 448
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=39.80 E-value=1.4e+02 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=8.7
Q ss_pred ccHHHHHHHHHHHHHHHH
Q 023338 236 IEYDNFIECCLTVKGLTE 253 (283)
Q Consensus 236 i~~~eF~~~~~~~~~~~~ 253 (283)
|+-+.|..++..+....+
T Consensus 92 V~~~~F~~~L~~LD~cl~ 109 (157)
T PF04136_consen 92 VNSDSFKPMLSRLDECLE 109 (157)
T ss_pred ccchHHHHHHHHHHHHHH
Confidence 444555555555443333
No 449
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=39.72 E-value=68 Score=28.04 Aligned_cols=13 Identities=23% Similarity=0.148 Sum_probs=5.9
Q ss_pred CcccHHHHHHHHH
Q 023338 234 KAIEYDNFIECCL 246 (283)
Q Consensus 234 g~i~~~eF~~~~~ 246 (283)
|.||.||=++.+.
T Consensus 301 G~itReeal~~v~ 313 (343)
T TIGR03573 301 GRITREEAIELVK 313 (343)
T ss_pred CCCCHHHHHHHHH
Confidence 4444444444433
No 450
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=39.71 E-value=80 Score=23.50 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=8.4
Q ss_pred eHHHHHHHhccc
Q 023338 269 TYENFMLAVLPF 280 (283)
Q Consensus 269 ~~~~~~~~~~~~ 280 (283)
+.+||+..+..+
T Consensus 117 tl~dFL~~Lk~~ 128 (138)
T smart00190 117 TLADFLERLKSI 128 (138)
T ss_pred HHHHHHHHHHHH
Confidence 667888776654
No 451
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=39.68 E-value=55 Score=25.67 Aligned_cols=36 Identities=17% Similarity=0.138 Sum_probs=28.4
Q ss_pred cCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc
Q 023338 126 RDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT 161 (283)
Q Consensus 126 ~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d 161 (283)
-|.+|.+++++|.+.++.....++.+.+.++++.-|
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 367899999999998876556678888888776544
No 452
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=39.42 E-value=84 Score=24.91 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=6.0
Q ss_pred HHHHHHHHhhCC
Q 023338 219 LDLLVTKFDKTG 230 (283)
Q Consensus 219 i~~l~~~~d~~~ 230 (283)
+-..++.||-+.
T Consensus 211 LI~F~qSfDPdS 222 (246)
T PF10897_consen 211 LIKFVQSFDPDS 222 (246)
T ss_pred HHHHHHhcCCCC
Confidence 334455555554
No 453
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=39.26 E-value=1.2e+02 Score=24.07 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCCCccCHHHHHHHHHHcCCCC
Q 023338 193 DRSGKIDSNELREALMSLGFAV 214 (283)
Q Consensus 193 ~~~G~i~~~el~~~l~~l~~~~ 214 (283)
++-..++.+|+++.|+.++.+.
T Consensus 66 ~gfly~~~eEL~e~Lk~~g~Rf 87 (210)
T COG1059 66 DGFLYLSEEELREKLKEVGYRF 87 (210)
T ss_pred cccccCCHHHHHHHHHHhcchh
Confidence 4455567788888888776654
No 454
>TIGR03734 PRTRC_parB PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.
Probab=39.24 E-value=1.3e+02 Score=28.18 Aligned_cols=8 Identities=0% Similarity=-0.193 Sum_probs=4.5
Q ss_pred hhHHHHHH
Q 023338 115 PNIVACFQ 122 (283)
Q Consensus 115 ~~l~~~F~ 122 (283)
..||+++.
T Consensus 383 ~~wr~a~~ 390 (554)
T TIGR03734 383 KVWRKALA 390 (554)
T ss_pred HHHHHHHH
Confidence 44666654
No 455
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=39.08 E-value=1.5e+02 Score=22.87 Aligned_cols=47 Identities=23% Similarity=0.362 Sum_probs=29.4
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDK 228 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~ 228 (283)
..+..+++.+-.+....|+.++|++.. .+|..++.++|+..+..+-.
T Consensus 85 ~Ql~AA~~Yl~~~~~~~~d~~~Fe~~c-GVGV~VT~E~I~~~V~~~i~ 131 (164)
T PF04558_consen 85 LQLDAALKYLKSNPSEPIDVAEFEKAC-GVGVVVTPEQIEAAVEKYIE 131 (164)
T ss_dssp HHHHHHHHHHHHHGG-G--HHHHHHTT-TTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHc-CCCeEECHHHHHHHHHHHHH
Confidence 467777777766666678888888765 56788899999988877643
No 456
>PHA03102 Small T antigen; Reviewed
Probab=38.98 E-value=1.7e+02 Score=22.25 Aligned_cols=10 Identities=0% Similarity=-0.150 Sum_probs=4.4
Q ss_pred CHHHHHHHHH
Q 023338 215 SPVVLDLLVT 224 (283)
Q Consensus 215 ~~~~i~~l~~ 224 (283)
+..+|+..++
T Consensus 20 s~~eIKkAYr 29 (153)
T PHA03102 20 NLPLMRKAYL 29 (153)
T ss_pred CHHHHHHHHH
Confidence 4444444443
No 457
>PHA03247 large tegument protein UL36; Provisional
Probab=38.96 E-value=5.2e+02 Score=29.63 Aligned_cols=11 Identities=27% Similarity=0.682 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 023338 239 DNFIECCLTVK 249 (283)
Q Consensus 239 ~eF~~~~~~~~ 249 (283)
.-+++.|+.|.
T Consensus 3112 AlLi~ACr~i~ 3122 (3151)
T PHA03247 3112 AVLIEACRRIR 3122 (3151)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 458
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.90 E-value=61 Score=19.09 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=18.1
Q ss_pred CCccC-HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 023338 195 SGKID-SNELREALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 195 ~G~i~-~~el~~~l~~l~~~~~~~~i~~l~~~~ 226 (283)
.|.|+ .+++-+.|...|+.++++.++.+++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~~ 47 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRRA 47 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHHc
Confidence 34554 333334444557777777777776653
No 459
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.83 E-value=81 Score=30.31 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred CCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcC--------ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh
Q 023338 111 PGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN--------QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS 179 (283)
Q Consensus 111 ~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~--------~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~ 179 (283)
...+.+++.+|..+|. .++.++.+++.+++.... .....+....++...|.+..+.+..+++..++..
T Consensus 14 ~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 14 CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 4456778888888888 788888888888776531 1112233344455555555566666666665553
No 460
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=38.81 E-value=1e+02 Score=19.44 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=7.7
Q ss_pred ccCHHHHHHHHHHcCC
Q 023338 197 KIDSNELREALMSLGF 212 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~ 212 (283)
-|..+||...|+..|.
T Consensus 24 PI~L~el~~~L~~~g~ 39 (64)
T PF09494_consen 24 PINLEELHAWLKASGI 39 (64)
T ss_pred CccHHHHHHHHHHcCC
Confidence 4455555555554333
No 461
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=38.57 E-value=1.2e+02 Score=29.33 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHc
Q 023338 151 RTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSL 210 (283)
Q Consensus 151 ~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l 210 (283)
....++++.+...+...+.+++|..++.. ++...+|..|+...+..|+.++|++.....
T Consensus 404 ~aA~~iF~nv~~p~~~~i~ld~~~~f~~~-E~a~~~~slfe~~~~~~Itrs~~~~~iv~~ 462 (714)
T KOG4629|consen 404 IAARKIFKNVAKPGVILIDLDDLLRFMGD-EEAERAFSLFEGASDENITRSSFKEWIVNI 462 (714)
T ss_pred HHHHHHHhccCCCCccchhhhhhhhcCCH-HHHHHHHHhhhhhcccCccHHHHHHHHHHH
Confidence 34466666666666666767766666553 667778888887666669999998877653
No 462
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=38.19 E-value=43 Score=25.64 Aligned_cols=28 Identities=7% Similarity=0.347 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCCCccCHHHHHHHHHhH
Q 023338 150 LRTVRLLMYTFTNTNARKIGPKEFIQVFHSL 180 (283)
Q Consensus 150 ~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~ 180 (283)
.++|+.|...+|.|-|. +.||+.++..+
T Consensus 67 meEIKQIKdiMDKDFDK---L~EFVEIMKeM 94 (205)
T PF15079_consen 67 MEEIKQIKDIMDKDFDK---LHEFVEIMKEM 94 (205)
T ss_pred HHHHHHHHHHHhhhHHH---HHHHHHHHHHH
Confidence 46777787778776543 77888887653
No 463
>PLN03223 Polycystin cation channel protein; Provisional
Probab=37.59 E-value=3e+02 Score=29.04 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=21.5
Q ss_pred HHHHHHHh-cC-ccCCHHHHHHHHHHhcCCCCCccCHHHHH
Q 023338 136 ELQGALSS-YN-QSFSLRTVRLLMYTFTNTNARKIGPKEFI 174 (283)
Q Consensus 136 el~~~l~~-~~-~~~~~~~~~~l~~~~d~~~~g~i~~~ef~ 174 (283)
.++++|+. +. ..+++..+.++++....+++..-+.++|.
T Consensus 1446 rfrslL~g~~~~~~i~~~~~~~~lr~w~ge~~~~~~~~~~~ 1486 (1634)
T PLN03223 1446 KWRSMFKGWFYKNHIPEARVRRQLRIWKGENPDEEEEEAFR 1486 (1634)
T ss_pred HHHHHHhhhcccccCCcHHHHHHHHHhcCCCCCcccchhhh
Confidence 34445532 22 45677777777777665554444444443
No 464
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=37.54 E-value=2.6e+02 Score=23.85 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=16.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHH
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMS 209 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~ 209 (283)
..|..+....++.+.-+..+..|+.+|..
T Consensus 22 ~~L~~il~~ia~tg~~~~~W~~lk~l~~~ 50 (288)
T PF09184_consen 22 PELEDILEHIAKTGETWYPWSLLKSLFRH 50 (288)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHH
Confidence 34555555555555555566666666653
No 465
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=37.33 E-value=76 Score=18.99 Aligned_cols=31 Identities=29% Similarity=0.390 Sum_probs=20.7
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCC
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~ 230 (283)
+|.|+..+|++++. ++...+-.+++.+|..+
T Consensus 8 ~~~itv~~~rd~lg-----~sRK~ai~lLE~lD~~g 38 (50)
T PF09107_consen 8 NGEITVAEFRDLLG-----LSRKYAIPLLEYLDREG 38 (50)
T ss_dssp TSSBEHHHHHHHHT-----S-HHHHHHHHHHHHHTT
T ss_pred CCcCcHHHHHHHHC-----ccHHHHHHHHHHHhccC
Confidence 56777777777774 46666666777777654
No 466
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=37.21 E-value=3.2e+02 Score=24.71 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=15.7
Q ss_pred CCccCHHHHHH----HHHHcCCCCCHHHHHHHHHHH
Q 023338 195 SGKIDSNELRE----ALMSLGFAVSPVVLDLLVTKF 226 (283)
Q Consensus 195 ~G~i~~~el~~----~l~~l~~~~~~~~i~~l~~~~ 226 (283)
.|.++...|.+ +|+.+.....+++++.+.+.+
T Consensus 92 ~g~~D~~~l~~~i~~~l~~~CAP~RD~~v~~l~~~~ 127 (441)
T PF05794_consen 92 HGVLDLVKLARFIISLLKKLCAPMRDEEVKALVEKI 127 (441)
T ss_pred cCCcCHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 44555544433 333344445555666665555
No 467
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=37.18 E-value=50 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=25.0
Q ss_pred CCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcC
Q 023338 112 GTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTN 162 (283)
Q Consensus 112 ~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~ 162 (283)
....++.+++..+..+++..|.. |+.+-..+| -++.+.++.+-..+..
T Consensus 6 ~~~~~i~~ii~~y~~~~~~li~~--L~~vQ~~~G-~Ip~e~~~~iA~~l~v 53 (156)
T PRK05988 6 WDAARIAAIIAEHKHLEGALLPI--LHAIQDEFG-YVPEDAVPVIAEALNL 53 (156)
T ss_pred hHHHHHHHHHHHcCCCHHHHHHH--HHHHHHHcC-CCCHHHHHHHHHHhCC
Confidence 34456777777776655544433 333333344 3556666655555543
No 468
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=37.08 E-value=58 Score=30.16 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 023338 202 ELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLT 247 (283)
Q Consensus 202 el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~ 247 (283)
-++..|+.+|..++++++.+++..++.-.+..+.|+.+|+..++..
T Consensus 431 av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 431 AVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Confidence 4567788889999999999988887654322256998898888665
No 469
>PF11269 DUF3069: Protein of unknown function (DUF3069); InterPro: IPR021422 This family of proteins with unknown function appear to be restricted to Gammaproteobacteria. ; PDB: 2PV4_A.
Probab=36.88 E-value=1.6e+02 Score=21.23 Aligned_cols=9 Identities=11% Similarity=0.102 Sum_probs=4.7
Q ss_pred cccHHHHHH
Q 023338 235 AIEYDNFIE 243 (283)
Q Consensus 235 ~i~~~eF~~ 243 (283)
.+..+||..
T Consensus 77 ~~~~~EY~~ 85 (121)
T PF11269_consen 77 EEEEQEYRA 85 (121)
T ss_dssp TS-HHHHHH
T ss_pred HHHHHHHHH
Confidence 455666655
No 470
>PF02459 Adeno_terminal: Adenoviral DNA terminal protein; InterPro: IPR003391 The genome of adenovirus contains a protein covalently bound to the 5' end of each strand of the linear DNA molecule []. Since adenovirus DNA replication is initiated at the termini of the DNA molecule it has been proposed that the terminal protein serves as the primer for initiation of replication. However, the priming function now appears to reside in the precursor form of the terminal protein (pTP) found on the 5' ends of nascent DNA strands replicated in vitro [, ] and as a component of DNA-protein complexes isolated from virions of the protease-deficient adenovirus serotype 2 (Ad2) mutant tsl. The pTP is encoded by the leftward-transcribed strand of the viral genome and comprises part of a transcription unit that also encodes the single-strand DNA binding protein [].; GO: 0003677 DNA binding, 0006260 DNA replication
Probab=36.82 E-value=79 Score=29.21 Aligned_cols=48 Identities=13% Similarity=0.281 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhC
Q 023338 182 NWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKT 229 (283)
Q Consensus 182 ~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~ 229 (283)
.++++-...+..+.|.++.+|...+|..+.+.-..-+++++++.+..+
T Consensus 456 I~~Dl~~~verag~~~~~~ee~e~~l~dI~y~~nSGDv~eIL~Q~~~n 503 (548)
T PF02459_consen 456 ISRDLLATVERAGRGELEEEEIEQFLADIAYRDNSGDVEEILRQAALN 503 (548)
T ss_pred HHHHHHHHHhccCcccCCHHHHHHHHHHhcccccCCCHHHHHHHhhcc
Confidence 345666667888888999999999999988776666788888877554
No 471
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=36.71 E-value=1.3e+02 Score=20.23 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=10.8
Q ss_pred CCccCHHHHHHHHHhc
Q 023338 129 SGLIDDKELQGALSSY 144 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~ 144 (283)
||.|+.+|+..+...+
T Consensus 13 DG~i~~~E~~~i~~~~ 28 (104)
T cd07177 13 DGRVDEEEIAAIEALL 28 (104)
T ss_pred cCCCCHHHHHHHHHHH
Confidence 6778877776665543
No 472
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=36.62 E-value=1.6e+02 Score=20.98 Aligned_cols=107 Identities=11% Similarity=0.130 Sum_probs=55.0
Q ss_pred CCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHH
Q 023338 129 SGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALM 208 (283)
Q Consensus 129 ~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~ 208 (283)
+..++.+|+...+..++..++..++..++..+-.. .-..|..+.. .|...|..+-... .|..+....++.
T Consensus 3 ~~~lt~~ei~~~i~~l~~~~~k~~m~~iw~~~~~~-----ek~ky~~m~~---~L~~~~~~la~~~--~ip~~~~~k~W~ 72 (129)
T PF09687_consen 3 SKNLTDEEINKKINSLGEFVSKKDMYNIWNQVMKN-----EKKKYYDMIN---KLWKYFEELAKKY--NIPEEYKKKIWK 72 (129)
T ss_pred chHhhHHHHHHHHHHccCCCCHHHHHHHHHHHHHH-----HHHHHHHHHH---HHHHHHHHHHHHc--CCChHHHHHHHH
Confidence 34567788888888888778888888877765331 1223333332 3333333332111 344444444444
Q ss_pred HcCCCCC------HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHH
Q 023338 209 SLGFAVS------PVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVK 249 (283)
Q Consensus 209 ~l~~~~~------~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~ 249 (283)
.+...++ +......+..+-.. +.++..+|..++....
T Consensus 73 ~c~~~i~~~l~~~e~~~~~~f~~~~~~----~~~~~~ef~~fi~~~~ 115 (129)
T PF09687_consen 73 ECYEEITKELKKMEKFYNKNFYDLLKK----GICSRDEFKNFINSCR 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHH
Confidence 3211111 12222333333322 4678888888776544
No 473
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=36.54 E-value=56 Score=25.77 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=23.9
Q ss_pred ccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcC
Q 023338 125 DRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTN 162 (283)
Q Consensus 125 d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~ 162 (283)
.-|.+|.++++||.+.+..-+..++.+++++++...++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35678999999999988876667788888888876544
No 474
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=36.44 E-value=70 Score=24.58 Aligned_cols=90 Identities=20% Similarity=0.198 Sum_probs=47.3
Q ss_pred hHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHh--HH--HHHH-----H
Q 023338 116 NIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHS--LQ--NWRA-----M 186 (283)
Q Consensus 116 ~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~--~~--~~~~-----~ 186 (283)
.+.++.+.+|. -.-+|.-.-....|...|+..+...+++|++.. -..|++-+.. ++ +++. -
T Consensus 72 ~l~efl~qLdd-YtP~IPDavt~~yL~~aGf~~~D~rv~RLvsLa---------AQKfvSDIa~DA~Q~~k~r~~~~~~~ 141 (176)
T KOG3423|consen 72 HLEEFLAQLDD-YTPTIPDAVTDHYLKKAGFQTSDPRVKRLVSLA---------AQKFVSDIANDALQHSKIRTKTAIGK 141 (176)
T ss_pred HHHHHHHHHhc-CCCCCcHHHHHHHHHhcCCCcCcHHHHHHHHHH---------HHHHHHHHHHHHHHHhhhcccccccc
Confidence 45554444433 245555555666677777777777777776543 2233332221 00 0010 0
Q ss_pred HHHhccCCCCccCHHHHHHHHHHcCCCCC
Q 023338 187 FEKVDRDRSGKIDSNELREALMSLGFAVS 215 (283)
Q Consensus 187 f~~~D~~~~G~i~~~el~~~l~~l~~~~~ 215 (283)
=+..-+|+.=.++.++|..+|...|+++.
T Consensus 142 ~k~~~kdkK~tLtmeDL~~AL~EyGinv~ 170 (176)
T KOG3423|consen 142 DKKQAKDKKYTLTMEDLSPALAEYGINVK 170 (176)
T ss_pred ccccccccceeeeHHHHHHHHHHhCcccC
Confidence 11223455567777888888887776654
No 475
>KOG3197 consensus Predicted hydrolases of HD superfamily [General function prediction only]
Probab=36.32 E-value=2e+02 Score=22.69 Aligned_cols=14 Identities=0% Similarity=0.162 Sum_probs=9.0
Q ss_pred HHHHHHHHHhccCC
Q 023338 181 QNWRAMFEKVDRDR 194 (283)
Q Consensus 181 ~~~~~~f~~~D~~~ 194 (283)
++|.++|..|....
T Consensus 130 kEi~elw~eYE~~s 143 (210)
T KOG3197|consen 130 KEITELWLEYEEAS 143 (210)
T ss_pred HHHHHHHHHHHhcC
Confidence 56677777776553
No 476
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=36.26 E-value=90 Score=20.32 Aligned_cols=29 Identities=17% Similarity=0.385 Sum_probs=18.5
Q ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHcC
Q 023338 181 QNWRAMFEKVDRDRSGKIDSNELREALMSLG 211 (283)
Q Consensus 181 ~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~ 211 (283)
++|++++....+ ...+|..|+..+...||
T Consensus 39 edl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 39 EDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 455666666543 34677777777776665
No 477
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=36.24 E-value=1.1e+02 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.309 Sum_probs=28.4
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhC
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKT 229 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~ 229 (283)
...+++.+. .....++.+||.++|. ++...++.+++.+...
T Consensus 6 y~~L~~~~~-~~~~~vtl~elA~~l~-----cS~Rn~r~lLkkm~~~ 46 (115)
T PF12793_consen 6 YQRLWQHYG-GQPVEVTLDELAELLF-----CSRRNARTLLKKMQEE 46 (115)
T ss_pred HHHHHHHcC-CCCcceeHHHHHHHhC-----CCHHHHHHHHHHHHHC
Confidence 344555554 5666788888888875 5777788888777554
No 478
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=36.19 E-value=2.2e+02 Score=22.54 Aligned_cols=69 Identities=13% Similarity=0.275 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCCccCHHHHHHHHHHc---CC---CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 183 WRAMFEKVDRDRSGKIDSNELREALMSL---GF---AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 183 ~~~~f~~~D~~~~G~i~~~el~~~l~~l---~~---~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
+...|...|.+- ..+.-+.++..|..+ .. ......|+.++..++...-+.+....+||.++...+..+.
T Consensus 110 ~e~~l~~~~~~~-~r~~G~~~R~~L~~Lr~~~~p~k~~~~~Li~~l~D~Ye~AR~g~~~FGe~Ey~ky~~~l~eL~ 184 (186)
T PF07406_consen 110 LEIPLHKLDRSL-ARLPGENFRSYLLDLRNSSTPLKGSRSALIDQLLDGYEHARHGPGPFGEAEYLKYQELLTELA 184 (186)
T ss_pred HhhHHHhhCCCc-cccccccHHHHHHHHHhccCCccCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHh
Confidence 333344444432 345555667766433 22 2346678888888876654456777788888777666554
No 479
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=36.17 E-value=2.7e+02 Score=23.71 Aligned_cols=14 Identities=14% Similarity=0.320 Sum_probs=6.1
Q ss_pred ccCCHHHHHHHHHH
Q 023338 146 QSFSLRTVRLLMYT 159 (283)
Q Consensus 146 ~~~~~~~~~~l~~~ 159 (283)
..++.+.++.|...
T Consensus 202 ~~~~~~al~~l~~~ 215 (337)
T PRK12402 202 VDYDDDGLELIAYY 215 (337)
T ss_pred CCCCHHHHHHHHHH
Confidence 33444444444433
No 480
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=36.16 E-value=1.5e+02 Score=20.75 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=41.0
Q ss_pred ccCHHHHHHHHHhcC---ccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCC--ccCHHHHHH
Q 023338 131 LIDDKELQGALSSYN---QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSG--KIDSNELRE 205 (283)
Q Consensus 131 ~i~~~el~~~l~~~~---~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G--~i~~~el~~ 205 (283)
.||.-|+++.|..+. ...+.+.+...++.+.. +++|...++.++.++.-... ..+ .--.+|++-
T Consensus 20 ~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRR-------vND~alAVR~lE~vK~K~~~----~~~~y~~~lqeikp 88 (103)
T cd00923 20 DIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRR-------VNDFALAVRILEAIKDKCGA----HKEIYPYILQEIKP 88 (103)
T ss_pred CccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHccC----chhhHHHHHHHHhH
Confidence 477889999987642 34566777777777644 44566665554444311110 001 111356667
Q ss_pred HHHHcCCCC
Q 023338 206 ALMSLGFAV 214 (283)
Q Consensus 206 ~l~~l~~~~ 214 (283)
.|..||...
T Consensus 89 ~l~ELGI~t 97 (103)
T cd00923 89 TLKELGIST 97 (103)
T ss_pred HHHHHCCCC
Confidence 777777654
No 481
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=36.06 E-value=95 Score=23.07 Aligned_cols=8 Identities=13% Similarity=0.393 Sum_probs=4.6
Q ss_pred ccHHHHHH
Q 023338 236 IEYDNFIE 243 (283)
Q Consensus 236 i~~~eF~~ 243 (283)
|+.+|++.
T Consensus 70 it~eeL~~ 77 (134)
T PRK10328 70 INPEELLG 77 (134)
T ss_pred CCHHHHhh
Confidence 66666643
No 482
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.83 E-value=2.2e+02 Score=25.68 Aligned_cols=11 Identities=0% Similarity=-0.402 Sum_probs=4.4
Q ss_pred ccHHHHHHHHH
Q 023338 236 IEYDNFIECCL 246 (283)
Q Consensus 236 i~~~eF~~~~~ 246 (283)
.+-+|...++.
T Consensus 457 W~d~eIellLs 467 (484)
T KOG1092|consen 457 WSDREIELLLS 467 (484)
T ss_pred ccHHHHHHHHH
Confidence 33344444433
No 483
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.76 E-value=1.1e+02 Score=24.51 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=5.9
Q ss_pred CCccCHHHHHHHH
Q 023338 195 SGKIDSNELREAL 207 (283)
Q Consensus 195 ~G~i~~~el~~~l 207 (283)
||.|+..|-.+|.
T Consensus 124 DGhIDe~ERa~I~ 136 (225)
T COG2979 124 DGHIDEKERARIM 136 (225)
T ss_pred cCCcCHHHHHHHH
Confidence 3444444444444
No 484
>PHA00649 hypothetical protein
Probab=35.71 E-value=1.2e+02 Score=19.46 Aligned_cols=32 Identities=9% Similarity=-0.054 Sum_probs=13.7
Q ss_pred HHHHHhcCCCCCccCHHHHHHHHHhHHHHHHH
Q 023338 155 LLMYTFTNTNARKIGPKEFIQVFHSLQNWRAM 186 (283)
Q Consensus 155 ~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~ 186 (283)
..+..+..|-+.-...+||..-++..++++.+
T Consensus 21 ~~~~~LGVD~~~P~~VEEFr~D~~~~Rr~RKA 52 (83)
T PHA00649 21 KVFAILGVDVDVPEQVEEFREDLRFGRRMRKA 52 (83)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333445555555444444433
No 485
>PF12207 DUF3600: Domain of unknown function (DUF3600); InterPro: IPR022019 This family of proteins is found in bacteria. Proteins in this family are approximately 230 amino acids in length. This domain is the C-terminal of the putative ecf-type sigma factor negative effector. ; PDB: 3FGG_A 3FH3_A.
Probab=35.68 E-value=1.5e+02 Score=22.29 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=23.1
Q ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHH-HHHHhhCCCCCCcccHHHHH-----HHHHHHHHHHHHhhhcCCCCCc
Q 023338 196 GKIDSNELREALMSLGFAVSPVVLDLL-VTKFDKTGGKSKAIEYDNFI-----ECCLTVKGLTEKFKERDTTYSG 264 (283)
Q Consensus 196 G~i~~~el~~~l~~l~~~~~~~~i~~l-~~~~d~~~d~~g~i~~~eF~-----~~~~~~~~~~~~f~~~d~~~~g 264 (283)
|.++.+||..+...| ..+..+ +..-|. +|.|+++.+. .+-..+..|.-.|..++...+.
T Consensus 38 ~~lgeeEfeef~~lL------K~lt~~kLkygD~----NGnidye~ls~~eqee~k~~~~eLqPYFdKLN~~~Ss 102 (162)
T PF12207_consen 38 GELGEEEFEEFKELL------KKLTNAKLKYGDK----NGNIDYEKLSKEEQEEYKKLTMELQPYFDKLNGHKSS 102 (162)
T ss_dssp HCS-HHHHHHHHHHH------HHHHHHHHHHB-T----TS-B-GGGS-HHHHHHHHHHHHHHHHHHHHHTT---H
T ss_pred HhhhHHHHHHHHHHH------HHHHHhHHhhccc----CCCcCHHhCCHHHHHHHHHHHHhcchHHHHhcCCcch
Confidence 356677766665432 112222 222333 3556655432 2222233455566666655443
No 486
>PF14164 YqzH: YqzH-like protein
Probab=35.63 E-value=1.2e+02 Score=19.32 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=20.6
Q ss_pred HHHHHHHHhccC-CCCccCHHHHHHHHHHc
Q 023338 182 NWRAMFEKVDRD-RSGKIDSNELREALMSL 210 (283)
Q Consensus 182 ~~~~~f~~~D~~-~~G~i~~~el~~~l~~l 210 (283)
-++.+|+.|..| ..-.++.+|++.+...+
T Consensus 9 mi~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 9 MIINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 457788888666 56678888887776543
No 487
>COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair]
Probab=35.63 E-value=1.7e+02 Score=29.72 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=38.3
Q ss_pred ccCHHHHHHHHHHcCCCCCHH---HHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHHHH
Q 023338 197 KIDSNELREALMSLGFAVSPV---VLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENF 273 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~---~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~ 273 (283)
.|+.++++...... +.+ +|-.+++.+...-. ++-++.++++..+.+.-.....+.....-.+|.-+++-+++
T Consensus 131 ~lsve~L~~~~~~~----~~~kl~dl~liyee~~~~l~-~~~l~~ed~l~~lad~~~~s~~L~~~~IvIDGFt~FS~~E~ 205 (1108)
T COG3857 131 QLSVEDLEDTADEQ----SLKKLHDLSLIYEEFEANLY-NNYLDPEDSLSRLADKIKKSEQLKQAAIVIDGFTRFSPEEY 205 (1108)
T ss_pred cCCHHHHhcccchh----hhhhhhhHHHHHHHHHHHHH-hccCChHHHHHHHHHhcccchhhccceEEEeccccCCHHHH
Confidence 56666665544321 222 33344444433322 25677777777777644444555555556666666666553
No 488
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=35.52 E-value=2.7e+02 Score=29.60 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=34.7
Q ss_pred ccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcC
Q 023338 197 KIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERD 259 (283)
Q Consensus 197 ~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d 259 (283)
.++...+.++|+..-..+++.+|+.|-..+..-.. -+-.++++......+..+...|+.+.
T Consensus 200 ~~~~~~l~~~l~~~l~~l~~~~i~~l~e~~~~~~~--~~~~le~l~~~~~~l~~i~~~y~~y~ 260 (1353)
T TIGR02680 200 KPDEGVLSDALTEALPPLDDDELTDVADALEQLDE--YRDELERLEALERALRNFLQRYRRYA 260 (1353)
T ss_pred CCChHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677777776666777777777666643221 12233445455555555555555544
No 489
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=35.49 E-value=1.6e+02 Score=23.94 Aligned_cols=113 Identities=7% Similarity=-0.061 Sum_probs=0.0
Q ss_pred CchhHHHHHHHH------------ccCCCCccCHHHHHHHHHhcCc-cCCHHHHHHHHHHhcCCCCC------ccCHHHH
Q 023338 113 TDPNIVACFQLA------------DRDNSGLIDDKELQGALSSYNQ-SFSLRTVRLLMYTFTNTNAR------KIGPKEF 173 (283)
Q Consensus 113 ~~~~l~~~F~~~------------d~d~~g~i~~~el~~~l~~~~~-~~~~~~~~~l~~~~d~~~~g------~i~~~ef 173 (283)
.+..+.+++..+ +.+.--.++.+||+++++..|. ......++.+...+-.+..+ ..+.+++
T Consensus 44 ~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a~~eeL~~~Irp~Gf~~~KA~~Lk~la~~i~~~~g~~~~~~~~~~re~L 123 (218)
T PRK13913 44 KFEAVEKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFYNQKAKRLIDLSENILKDFGSFENFKQEVTREWL 123 (218)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCHHHHHcCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCchhccCchHHHHH
Q ss_pred HHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 023338 174 IQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAV-SPVVLDLLVTK 225 (283)
Q Consensus 174 ~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~-~~~~i~~l~~~ 225 (283)
+++-.-=.+.-+++..|--++...+--.-..++++.+|... +-++++.++..
T Consensus 124 l~l~GIG~kTAd~iLlya~~rp~fvVDty~~Rv~~RlG~~~~~y~~~~~~~~~ 176 (218)
T PRK13913 124 LDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKLGIEIEDYDELQHFFEK 176 (218)
T ss_pred HcCCCccHHHHHHHHHHHcCCCccccchhHHHHHHHcCCCCCCHHHHHHHHHH
No 490
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.43 E-value=4.1e+02 Score=25.51 Aligned_cols=122 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHH
Q 023338 109 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFE 188 (283)
Q Consensus 109 ~~~~~~~~l~~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~ 188 (283)
+.+....++.++++..-....-.++.+.+..+++..+.. ...+..++...-.-+.+.|+.+....++
T Consensus 180 f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~Gs--lR~al~lLdq~ia~~~~~It~~~V~~~L----------- 246 (618)
T PRK14951 180 LRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGS--MRDALSLTDQAIAFGSGQLQEAAVRQML----------- 246 (618)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCcCHHHHHHHH-----------
Q ss_pred HhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHH
Q 023338 189 KVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLT 252 (283)
Q Consensus 189 ~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~ 252 (283)
|.++.+.+..++..+...-....++.+-...+...+ -..-+++++.+++++-.+.
T Consensus 247 -------g~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~--~~~il~~l~~~~~~~~~~~ 301 (618)
T PRK14951 247 -------GSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLS--AASTLEEMAAVLQRMAVLQ 301 (618)
T ss_pred -------cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHH
No 491
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.38 E-value=2.8e+02 Score=23.50 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHccCCC--CccCHHHHHHHHHhcCc--cCCHHHHHHHHHHhcCCCCC---ccCHHHHHHHHH------hHHHH
Q 023338 117 IVACFQLADRDNS--GLIDDKELQGALSSYNQ--SFSLRTVRLLMYTFTNTNAR---KIGPKEFIQVFH------SLQNW 183 (283)
Q Consensus 117 l~~~F~~~d~d~~--g~i~~~el~~~l~~~~~--~~~~~~~~~l~~~~d~~~~g---~i~~~ef~~~~~------~~~~~ 183 (283)
+..+++.+..+.. .......++..+....+ ....+.+.++++.+-.+.+. .|+-+---..+. ..+.+
T Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~ 188 (324)
T PF11838_consen 109 LEPLYERLGWDPRPGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEW 188 (324)
T ss_dssp HHHHHHH--SSSS--SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHH
T ss_pred HHHHHHHcCCCCcccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhH
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
..+++.+..+. +.+|-..+|..++...+.+.++.++..+-.+. .|...+....+..+
T Consensus 189 ~~l~~~~~~~~----~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~----~v~~~d~~~~~~~~ 245 (324)
T PF11838_consen 189 DFLWELYKNST----SPEEKRRLLSALACSPDPELLKRLLDLLLSND----KVRSQDIRYVLAGL 245 (324)
T ss_dssp HHHHHHHHTTS----THHHHHHHHHHHTT-S-HHHHHHHHHHHHCTS----TS-TTTHHHHHHHH
T ss_pred HHHHHHHhccC----CHHHHHHHHHhhhccCCHHHHHHHHHHHcCCc----ccccHHHHHHHHHH
No 492
>PF15565 Imm16: Immunity protein 16
Probab=35.17 E-value=1.6e+02 Score=20.83 Aligned_cols=92 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCC
Q 023338 133 DDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREALMSLGF 212 (283)
Q Consensus 133 ~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~ 212 (283)
++++|..+|..+....+.+.+..|+..||.+.+-.| +..+..+.+.+|.+.- ...|...+..|-.
T Consensus 14 e~e~Fe~~L~~l~~~~d~~~I~~L~~~F~D~~d~eV-----------mf~lvh~lE~~~~~~~----l~~l~~~~p~m~~ 78 (106)
T PF15565_consen 14 ECEEFEEALNELAKYPDNDVIDDLCLIFDDETDHEV-----------MFSLVHFLEHFDMEEY----LPALAEAIPQMMI 78 (106)
T ss_pred HHHHHHHHHHHHHhcCCHhHHHHHHHHhcCccchHH-----------HHHHHHHHHHccHHHH----HHHHHHHHHHHHH
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHH
Q 023338 213 AVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTV 248 (283)
Q Consensus 213 ~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~ 248 (283)
...++.++.+.... ++.+.++...+++
T Consensus 79 ~A~keWa~il~~Ri---------lNs~~~~~~y~~v 105 (106)
T PF15565_consen 79 NAPKEWAKILHYRI---------LNSDDARKAYAKV 105 (106)
T ss_pred hhHHHHHHHHHHHH---------HcChHHHHHHHHh
No 493
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=34.88 E-value=2.5e+02 Score=22.77 Aligned_cols=113 Identities=15% Similarity=0.107 Sum_probs=0.0
Q ss_pred CCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcC-------------CCCCccC----------HHHHHHHHHhHHHH
Q 023338 127 DNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTN-------------TNARKIG----------PKEFIQVFHSLQNW 183 (283)
Q Consensus 127 d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~-------------~~~g~i~----------~~ef~~~~~~~~~~ 183 (283)
|.+..++-++|..+...+-..++.-+-+.+-+.++. +.+|.+- +.||..+ ....+
T Consensus 65 d~~D~aTNeDLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~laPlpn~DGe~P~~~~~~fP~TL~eF~~l--~~~~l 142 (216)
T PF07957_consen 65 DMSDYATNEDLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLLAPLPNADGEIPPGKDFLFPKTLKEFKNL--DDVKL 142 (216)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccccCCCCCCCCCCCCcccChhhHHHHHhc--cHHHH
Q ss_pred HHHHHHhccCCCCccCHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 023338 184 RAMFEKVDRDRSGKIDSNELREALMSLGFAV-----SPVVLDLLVTKFDKTGGKSKAIEYDNFIECC 245 (283)
Q Consensus 184 ~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~-----~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~ 245 (283)
..+.+.|+.--- .-..++|.++|..-...+ ++++|+..++.++.+.- ..| |+++.+++
T Consensus 143 ~~L~~FYellpp-~~e~e~~~~~Le~~~e~~~i~~~~d~~i~~~~k~~s~~el--d~i-fdelARyl 205 (216)
T PF07957_consen 143 IKLAKFYELLPP-LKEQEEFEEFLEGKVEDFHINEESDEEIEKELKKYSKEEL--DEI-FDELARYL 205 (216)
T ss_pred HHHHHHHHhcCC-cccHHHHHHHHhccccccccCCCChHHHHHHHHhcCHHHH--HHH-HHHHHHHh
No 494
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=34.84 E-value=3.9e+02 Score=25.13 Aligned_cols=127 Identities=9% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhc----CCCCCccCHHHHHHHHH----hHHHHHHHHHHhccCCCCccC
Q 023338 128 NSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFT----NTNARKIGPKEFIQVFH----SLQNWRAMFEKVDRDRSGKID 199 (283)
Q Consensus 128 ~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d----~~~~g~i~~~ef~~~~~----~~~~~~~~f~~~D~~~~G~i~ 199 (283)
.+-.|...|+-.+-...-|-+....++++++.-+ ..++..+.++||-.-.. ....-..++..+|...+-.+.
T Consensus 443 ddYkL~~nd~~~L~~vNfCLLnPktLE~fLKkKeIk~lmgg~D~~~YdE~F~k~M~ESI~CHlEsLIYddLdssqd~k~v 522 (782)
T PF07218_consen 443 DDYKLVENDFPTLENVNFCLLNPKTLEKFLKKKEIKSLMGGEDPISYDEKFTKYMNESINCHLESLIYDDLDSSQDIKIV 522 (782)
T ss_pred cccccccccccchhhcceeecCHHHHHHHHhHHHHHHHhcCCCcchHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhc
Q 023338 200 SNELREALMSLGFAVS---PVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKER 258 (283)
Q Consensus 200 ~~el~~~l~~l~~~~~---~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~ 258 (283)
...++.-|--+-..++ ...|..++..+-.+-+ --++.|..+...+..+..-|..+
T Consensus 523 lk~vKsKLyllqsGLSYKSrKlV~klf~eIqknpd----~~~eKltwI~enmy~ikryYt~~ 580 (782)
T PF07218_consen 523 LKNVKSKLYLLQSGLSYKSRKLVNKLFNEIQKNPD----PYFEKLTWIYENMYHIKRYYTFF 580 (782)
T ss_pred HHHHHhhhhhhhcccchhHHHHHHHHHHHHHhChH----HHHHHHHHHHHHHHHHHhhhhHH
No 495
>CHL00091 apcE phycobillisome linker protein
Probab=34.80 E-value=2.9e+02 Score=27.43 Aligned_cols=110 Identities=12% Similarity=0.132 Sum_probs=0.0
Q ss_pred CHHHHHHHHHh-----cCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHHHHHHH
Q 023338 133 DDKELQGALSS-----YNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNELREAL 207 (283)
Q Consensus 133 ~~~el~~~l~~-----~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~el~~~l 207 (283)
+..++..++++ ++..+-..+-..+...-..-.+|.|+..||+..+.+.+..+..|-.---+.+. ++.+.
T Consensus 516 ~~~~~~~vI~AaYrQVFgr~~~~~~r~~~~~lEsqL~nG~IsvREFIR~LakS~~fr~~f~~~~~~~k~------IEl~~ 589 (877)
T CHL00091 516 NETSLEVIIKAAYLRVFGREVYEEEKIWLKPLENELRRRQISVREFVRQLAKSSVFRSLYWSPLYICKA------IEYIH 589 (877)
T ss_pred ChHHHHHHHHHHHHHHhccchhhhhhhhhhhHHHHHhcCCccHHHHHHHHhccHHHHHhhccccCccch------hhhhh
Q ss_pred HHc--CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHh
Q 023338 208 MSL--GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKF 255 (283)
Q Consensus 208 ~~l--~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f 255 (283)
+.+ --..+..|+...+..+...+ |+.|+..+.+-....+.|
T Consensus 590 khlLGR~~~~~~Ei~~~~~i~a~~G-------~~a~IDalvdS~EY~~~F 632 (877)
T CHL00091 590 NRLLGRPTYGRQEINKYFDIAYKSG-------FYALIDALIDSPEYIETF 632 (877)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhcC-------HHHHHHHHhCcHHHHHHc
No 496
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=34.76 E-value=3.7e+02 Score=24.74 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHccCCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHh----------cCCCCCccCHHHHHHHHHhHHHHHHHHH
Q 023338 119 ACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTF----------TNTNARKIGPKEFIQVFHSLQNWRAMFE 188 (283)
Q Consensus 119 ~~F~~~d~d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~----------d~~~~g~i~~~ef~~~~~~~~~~~~~f~ 188 (283)
++|+..-+|++|.| -+++-..++..++..+++.|-..+ ..+.+..|+----..+.+.++.++.+-.
T Consensus 51 eaF~hVLrNgSG~i----k~Ki~dif~~~l~~~E~~~LatliYYPeeKldli~~~~~~~~~~wy~~tl~rlie~~k~v~s 126 (648)
T COG3855 51 EAFNHVLRNGSGVI----KEKIRDIFGNELSDTEIKSLATLIYYPEEKLDLIKQDFEENIDDWYRTTLYRLIELCKYVSS 126 (648)
T ss_pred HHHHHHHHcCCchH----HHHHHHHhccccchhHHHhhHHHhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HhccCCCCccCHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHh
Q 023338 189 KVDRDRSGKIDSNELREALMSL-----GFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKF 255 (283)
Q Consensus 189 ~~D~~~~G~i~~~el~~~l~~l-----~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f 255 (283)
++-+.+-..--.++|.-+|..| ...-..+-.++++..+ |+.+++.++...+..+.+.+
T Consensus 127 KYTRSKvRKAlp~~f~YIleELl~e~~~~~dKk~Yyd~I~~~i---------i~l~~a~e~I~ala~~iqrL 189 (648)
T COG3855 127 KYTRSKVRKALPKDFAYILEELLYEVDETTDKKEYYDEILDQI---------ISLDRAKEFIIALAYLIQRL 189 (648)
T ss_pred hhhHHHHHHhchHHHHHHHHHHHhhccccccHHHHHHHHHHHH---------HhcchHHHHHHHHHHHHHHH
No 497
>PRK01022 hypothetical protein; Provisional
Probab=34.75 E-value=1.4e+02 Score=23.07 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred CccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCC-------CccCHHHHHHHHHhHHHHHHHHHHhccCCCCccCHHH
Q 023338 130 GLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNA-------RKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDSNE 202 (283)
Q Consensus 130 g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~-------g~i~~~ef~~~~~~~~~~~~~f~~~D~~~~G~i~~~e 202 (283)
..++..||.+.|+.....++..++..+-..+..+.. ..+.-.-+..++....+++. ..++...+..++.+.
T Consensus 2 ~~m~~~eL~~~Lke~~~~~si~Dl~~~~~~l~~~~~~lp~~Yr~~~~~~~~~~~~~~~~eIk~--~~~~~~~d~~~d~e~ 79 (167)
T PRK01022 2 GAMTKGELGEKLKEEALEYSIYDLMKARVFLEKDIKYLPEKYREKYIESFFEYLFGTLNEIKS--GSFSEIEDPEIDEEE 79 (167)
T ss_pred CccCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh--CcccCCcCccCCHHH
Q ss_pred HHHHHHHc
Q 023338 203 LREALMSL 210 (283)
Q Consensus 203 l~~~l~~l 210 (283)
|.+++..+
T Consensus 80 ~~~~~~~i 87 (167)
T PRK01022 80 FKEFLARI 87 (167)
T ss_pred HHHHHHHH
No 498
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=34.73 E-value=2.6e+02 Score=23.04 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=0.0
Q ss_pred CCCCccCHHHHHHHHHhcCccCCHHHHHHHHHHhcCCCCCccCHHHHHHHHH----hHHHHHHHHHHhccCCCCccCHHH
Q 023338 127 DNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFH----SLQNWRAMFEKVDRDRSGKIDSNE 202 (283)
Q Consensus 127 d~~g~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i~~~ef~~~~~----~~~~~~~~f~~~D~~~~G~i~~~e 202 (283)
|..|.|+ ++-.+++..+ .+.++.|+..+.. .++++|...+. ...+|..+|+.| .|.|
T Consensus 79 DetG~id-d~~~d~~~~~-----~e~~~~iyk~Vte-----edIeef~a~Y~gSEeEk~Dl~~~Y~k~----kG~m---- 139 (264)
T KOG0719|consen 79 DETGSID-DESGDIDEDW-----LEFWRAIYKKVTE-----EDIEEFEANYQGSEEEKKDLLKLYNKF----KGKM---- 139 (264)
T ss_pred hccCCCC-CccchhhhHH-----HHHHHHHHhhccc-----ccHHHHHHHhcccHHHHHHHHHHHHhc----CChH----
Q ss_pred HHHHHHHc--CCCCCHHHHHHHHHHHhhCC
Q 023338 203 LREALMSL--GFAVSPVVLDLLVTKFDKTG 230 (283)
Q Consensus 203 l~~~l~~l--~~~~~~~~i~~l~~~~d~~~ 230 (283)
..||..+ ...-+.+.++.++..+-.++
T Consensus 140 -~~i~~~~l~~d~~De~R~keiid~~I~~G 168 (264)
T KOG0719|consen 140 -NRILESVLCSDPKDEDRFKEIIDEAIADG 168 (264)
T ss_pred -HHHHHhhhcCCcccHHHHHHHHHHHHhcC
No 499
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=34.66 E-value=76 Score=21.86 Aligned_cols=77 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHhhCCCCCCcccHHHHHHHHHHHHHHHHHhhhcCCCCCceeeeeHHHHH
Q 023338 195 SGKIDSNELREALMSLGFAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 274 (283)
Q Consensus 195 ~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d~~~d~~g~i~~~eF~~~~~~~~~~~~~f~~~d~~~~g~i~~~~~~~~ 274 (283)
||.|+.+|.+.+...+..-..+++.+.++...-... ++-++....+..-....+.|..--.-.+ ..+..+.+|+
T Consensus 13 DG~id~~E~~~I~~~~~~~~~~~~~~~~~~~~l~~p-----~~~~~la~~~~~~~~a~~~y~~s~~~~d-~~s~aE~~~L 86 (95)
T cd07178 13 DGHIDEAERARILGELGEAGLDAEERAFLEAELAAP-----LDPDALAAAVPDPELAAEVYAASLLAID-PDTFAERAYL 86 (95)
T ss_pred cCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHCC-----CCHHHHHHHcCCHHHHHHHHHHHHHHHc-CCCHHHHHHH
Q ss_pred HHh
Q 023338 275 LAV 277 (283)
Q Consensus 275 ~~~ 277 (283)
..+
T Consensus 87 ~~l 89 (95)
T cd07178 87 DEL 89 (95)
T ss_pred HHH
No 500
>PRK00404 tatB sec-independent translocase; Provisional
Probab=34.57 E-value=75 Score=23.79 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred cCHHHHHHHHH--------------------hHHHHHHHHHHhccCCCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 023338 168 IGPKEFIQVFH--------------------SLQNWRAMFEKVDRDRSGKIDSNELREALMSLGFAVSPVVLDLLVTKFD 227 (283)
Q Consensus 168 i~~~ef~~~~~--------------------~~~~~~~~f~~~D~~~~G~i~~~el~~~l~~l~~~~~~~~i~~l~~~~d 227 (283)
|.|.|++.++. .+.+++..|+....+-...+..+|+++.|........+++++.++....
T Consensus 4 IG~~ELlvI~VVaLlV~GPkkLP~laR~lG~~i~~~rr~~~~~k~ei~~E~~~~elr~~l~~~~~~~~~~~~~~~~~~~~ 83 (141)
T PRK00404 4 ISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNAIKQEVEREIGADEIRRQLHNEHILSMEQEARKILAPLT 83 (141)
T ss_pred ccHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhhhhHHHHHHHHhhhh
Done!