BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>023340
MATNSLQSLHHHSFLRRHHPDAAPAAALKPTNPNSLSFSLSNNNNTTTTTTTSANTMITF
SSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQHLQAQNFRQADEETRRLLIAL
AGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFI
RVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEG
MQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLSKSVLKTDYSF

High Scoring Gene Products

Symbol, full name Information P value
GUN4
GENOMES UNCOUPLED 4
protein from Arabidopsis thaliana 3.4e-54
sll1380
Sll1380 protein
protein from Synechocystis sp. PCC 6803 substr. Kazusa 3.2e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  023340
        (283 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2081207 - symbol:GUN4 "GENOMES UNCOUPLED 4" sp...   560  3.4e-54   1
UNIPROTKB|P74162 - symbol:sll1380 "Sll1380 protein" speci...   136  3.2e-08   1


>TAIR|locus:2081207 [details] [associations]
            symbol:GUN4 "GENOMES UNCOUPLED 4" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0010019 "chloroplast-nucleus signaling pathway" evidence=IMP]
            [GO:0019899 "enzyme binding" evidence=IPI] [GO:0043085 "positive
            regulation of catalytic activity" evidence=TAS] [GO:0046906
            "tetrapyrrole binding" evidence=IDA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=RCA;TAS] [GO:0006098
            "pentose-phosphate shunt" evidence=RCA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009073 "aromatic amino acid family
            biosynthetic process" evidence=RCA] [GO:0009965 "leaf
            morphogenesis" evidence=RCA] [GO:0010207 "photosystem II assembly"
            evidence=RCA] [GO:0016117 "carotenoid biosynthetic process"
            evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
            evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=RCA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            GO:GO:0043085 GO:GO:0031969 EMBL:AL356014 GO:GO:0015995
            GO:GO:0046906 EMBL:AY063918 EMBL:AY150510 IPI:IPI00516475
            PIR:T49008 RefSeq:NP_191499.1 UniGene:At.1522
            ProteinModelPortal:Q9LX31 SMR:Q9LX31 STRING:Q9LX31 PaxDb:Q9LX31
            PRIDE:Q9LX31 EnsemblPlants:AT3G59400.1 GeneID:825109
            KEGG:ath:AT3G59400 TAIR:At3g59400 eggNOG:NOG08265
            HOGENOM:HOG000243757 InParanoid:Q9LX31 OMA:WELNDET PhylomeDB:Q9LX31
            ProtClustDB:CLSN2684879 Genevestigator:Q9LX31 GermOnline:AT3G59400
            GO:GO:0010019 InterPro:IPR008629 Pfam:PF05419 Uniprot:Q9LX31
        Length = 265

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 113/190 (59%), Positives = 136/190 (71%)

Query:    94 FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
             FD+L  HL  QNFRQADEETRRLLI ++GEA+ KRGYVFFSEV+ I+  DL+AID LW +
Sbjct:    81 FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIK 140

Query:   154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
             +SD +FGYSVQ+KIW KV KDFT FF++V WMK LDTE+ QYNYRAFP EF WE   ETP
Sbjct:   141 HSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETP 200

Query:   214 VGHLPLTNALRGTQLLASILNHPAFEGMQXXXXXXNKQEEEVSKFGGGGDNGVLKTKPLS 273
             +GHLPLTNALRGTQLL  +L+HPAF           + E+E+++  G             
Sbjct:   201 LGHLPLTNALRGTQLLKCVLSHPAFA---TADDNSGETEDELNR--GVAVAKEQAGVGAD 255

Query:   274 KSVLKTDYSF 283
             K V KT+YSF
Sbjct:   256 KRVFKTNYSF 265


>UNIPROTKB|P74162 [details] [associations]
            symbol:sll1380 "Sll1380 protein" species:1111708
            "Synechocystis sp. PCC 6803 substr. Kazusa" [GO:0030288 "outer
            membrane-bounded periplasmic space" evidence=IDA] GO:GO:0030288
            EMBL:BA000022 GenomeReviews:BA000022_GR InterPro:IPR008629
            Pfam:PF05419 PIR:S75690 RefSeq:NP_441571.1 RefSeq:YP_005651629.1
            STRING:P74162 GeneID:12254283 GeneID:955004 KEGG:syn:sll1380
            KEGG:syy:SYNGTS_1676 PATRIC:23840573 eggNOG:COG5635
            HOGENOM:HOG000037177 OMA:RIGWRKD ProtClustDB:CLSK893182
            Uniprot:P74162
        Length = 214

 Score = 136 (52.9 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 34/105 (32%), Positives = 56/105 (53%)

Query:    92 ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
             ++F  L   L +Q F QA+E TRRLL+A      +  G++    ++ I   DLK ID+LW
Sbjct:    48 LNFQPLETALASQQFSQANEITRRLLLAATNRTLQ--GWLTTDTIEQIPCQDLKTIDQLW 105

Query:   152 RQYSDNKFGYSVQKKIWEKVN---------KDFTNFFIRVGWMKK 187
              Q+S+N+FG++ Q + +             + +  F  R+GW K+
Sbjct:   106 LQHSNNRFGFTPQLEAFLATGNRPGRLMSPESYDQFGDRIGWRKE 150


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      283       198   0.00083  111 3  11 22  0.49    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  168 KB (2099 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.00u 0.18s 19.18t   Elapsed:  00:00:01
  Total cpu time:  19.00u 0.18s 19.18t   Elapsed:  00:00:01
  Start:  Mon May 20 21:54:18 2013   End:  Mon May 20 21:54:19 2013

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