BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023340
         (283 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1Z3X|A Chain A, Structure Of Gun4 From Thermosynechococcus Elongatus
          Length = 238

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/147 (37%), Positives = 89/147 (60%), Gaps = 9/147 (6%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           + +  L + L A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW
Sbjct: 99  VDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLW 158

Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S  +FGYSVQ+++W    +++   + ++GW +          +  +P EFIW+    
Sbjct: 159 LAFSLGRFGYSVQRQLWLGCGQNWDRLWEKIGWRQG-------KRWPRYPNEFIWD--LS 209

Query: 212 TPVGHLPLTNALRGTQLLASILNHPAF 238
            P GHLPLTN LRG Q+L ++LNHPA+
Sbjct: 210 APRGHLPLTNQLRGVQVLNALLNHPAW 236


>pdb|1Z3Y|A Chain A, Structure Of Gun4-1 From Thermosynechococcus Elongatus
          Length = 238

 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 84/136 (61%), Gaps = 9/136 (6%)

Query: 103 AQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYS 162
           A+ F  AD  T + L  LAG  ++KR +++F+EV+ +   DL+ ID+LW  +S  +FGYS
Sbjct: 110 AEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYS 169

Query: 163 VQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNA 222
           VQ+++W    +++   + ++GW +          +  +P EFIW+     P GHLPLTN 
Sbjct: 170 VQRQLWLGCGQNWDRLWEKIGWRQG-------KRWPRYPNEFIWD--LSAPRGHLPLTNQ 220

Query: 223 LRGTQLLASILNHPAF 238
           LRG Q+L ++LNHPA+
Sbjct: 221 LRGVQVLNALLNHPAW 236


>pdb|1Y6I|A Chain A, Synechocystis Gun4
          Length = 233

 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 9/147 (6%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELW 151
           I +  L + L +Q+F  ADE TR  L  LAG  + +R +++F+EV+     DL  I+ LW
Sbjct: 91  IDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALW 150

Query: 152 RQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKE 211
             +S+  FG+SVQ+++W    K+FT  + ++GW            +  +P  F W+    
Sbjct: 151 WLHSNGNFGFSVQRRLWLASGKEFTKLWPKIGWKSG-------NVWTRWPKGFTWD--LS 201

Query: 212 TPVGHLPLTNALRGTQLLASILNHPAF 238
            P GHLPL N LRG ++  S+  HP +
Sbjct: 202 APQGHLPLLNQLRGVRVAESLYRHPVW 228


>pdb|1ZXO|A Chain A, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25.
 pdb|1ZXO|F Chain F, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25.
 pdb|1ZXO|B Chain B, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25.
 pdb|1ZXO|D Chain D, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25.
 pdb|1ZXO|C Chain C, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25.
 pdb|1ZXO|E Chain E, X-Ray Crystal Structure Of Protein Q8a1p1 From Bacteroides
           Thetaiotaomicron. Northeast Structural Genomics
           Consortium Target Btr25
          Length = 291

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 137 QFIAEADL---KAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEME 193
           +F+ + DL   + ID ++RQ   N+F  S+   I + + +      +   ++      + 
Sbjct: 168 EFLKQFDLTPPEIIDRVYRQPFPNRFLASLSPFIAQHLEEPAIRQLVXNSFIAFFRRNVX 227

Query: 194 QYNYRAFPTEFI 205
           QY+Y+ +P  FI
Sbjct: 228 QYDYKQYPVHFI 239


>pdb|1K32|A Chain A, Crystal Structure Of The Tricorn Protease
 pdb|1K32|B Chain B, Crystal Structure Of The Tricorn Protease
 pdb|1K32|C Chain C, Crystal Structure Of The Tricorn Protease
 pdb|1K32|D Chain D, Crystal Structure Of The Tricorn Protease
 pdb|1K32|E Chain E, Crystal Structure Of The Tricorn Protease
 pdb|1K32|F Chain F, Crystal Structure Of The Tricorn Protease
          Length = 1045

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 136 VQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNF 178
           V  I E  L+  DE W+   DN +  +V K+I E++ + + N 
Sbjct: 653 VSSIHEEFLQMYDEAWKLARDNYWNEAVAKEISERIYEKYRNL 695


>pdb|1N6D|A Chain A, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6D|B Chain B, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6D|C Chain C, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6D|D Chain D, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6D|E Chain E, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6D|F Chain F, Tricorn Protease In Complex With Tetrapeptide Chloromethyl
           Ketone Derivative
 pdb|1N6E|A Chain A, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6E|C Chain C, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6E|E Chain E, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6E|G Chain G, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6E|I Chain I, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6E|K Chain K, Tricorn Protease In Complex With A Tridecapeptide
           Chloromethyl Ketone Derivative
 pdb|1N6F|A Chain A, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
 pdb|1N6F|B Chain B, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
 pdb|1N6F|C Chain C, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
 pdb|1N6F|D Chain D, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
 pdb|1N6F|E Chain E, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
 pdb|1N6F|F Chain F, Tricorn Protease In Complex With Z-Phe-Diketo-Arg-Glu-Phe
          Length = 1071

 Score = 28.5 bits (62), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 136 VQFIAEADLKAIDELWRQYSDNKFGYSVQKKIWEKVNKDFTNF 178
           V  I E  L+  DE W+   DN +  +V K+I E++ + + N 
Sbjct: 679 VSSIHEEFLQMYDEAWKLARDNYWNEAVAKEISERIYEKYRNL 721


>pdb|2LNU|A Chain A, Solution Nmr Structure Of The Uncharacterized Protein From
           Gene Locus Rrnac0354 Of Haloarcula Marismortui,
           Northeast Structural Genomics Consortium Target Hmr11
          Length = 190

 Score = 27.7 bits (60), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 92  ISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDEL 150
           +SFDL  +      FRQA +E+R L +    + + ++ Y     ++   + DL   DE+
Sbjct: 84  LSFDLDGESRDLHAFRQAADESRTLFVPFRDKTTGQQSYDGGRYMELEPDRDLSDGDEI 142


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.398 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,046,903
Number of Sequences: 62578
Number of extensions: 234503
Number of successful extensions: 552
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 11
length of query: 283
length of database: 14,973,337
effective HSP length: 98
effective length of query: 185
effective length of database: 8,840,693
effective search space: 1635528205
effective search space used: 1635528205
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)