BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023340
(283 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LX31|GUN4C_ARATH Tetrapyrrole-binding protein, chloroplastic OS=Arabidopsis thaliana
GN=GUN4 PE=1 SV=1
Length = 265
Score = 234 bits (596), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 117/195 (60%), Positives = 142/195 (72%), Gaps = 15/195 (7%)
Query: 94 FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
FD+L HL QNFRQADEETRRLLI ++GEA+ KRGYVFFSEV+ I+ DL+AID LW +
Sbjct: 81 FDVLENHLVNQNFRQADEETRRLLIQISGEAAVKRGYVFFSEVKTISPEDLQAIDNLWIK 140
Query: 154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
+SD +FGYSVQ+KIW KV KDFT FF++V WMK LDTE+ QYNYRAFP EF WE ETP
Sbjct: 141 HSDGRFGYSVQRKIWLKVKKDFTRFFVKVEWMKLLDTEVVQYNYRAFPDEFKWELNDETP 200
Query: 214 VGHLPLTNALRGTQLLASILNHPAFEGMQDDDDDDNKQEEEVSKFGGGGDNGVLKTKPLS 273
+GHLPLTNALRGTQLL +L+HPAF DD+ + E+E+++ GV K +
Sbjct: 201 LGHLPLTNALRGTQLLKCVLSHPAFATA---DDNSGETEDELNR-------GVAVAKEQA 250
Query: 274 -----KSVLKTDYSF 283
K V KT+YSF
Sbjct: 251 GVGADKRVFKTNYSF 265
>sp|Q1XDT5|YCF53_PORYE Uncharacterized protein ycf53 OS=Porphyra yezoensis GN=ycf53 PE=3
SV=1
Length = 237
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 94/152 (61%), Gaps = 9/152 (5%)
Query: 88 TSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAI 147
+++ +++ L L ++ +AD+ T++ LI LAG ++ R +++F++++ I DL+ I
Sbjct: 93 SAQQMNYKDLQMLLTHRDLLKADQLTQQKLIQLAGVNAQTRNWLYFTDIKKIPAQDLQTI 152
Query: 148 DELWRQYSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWE 207
D+LW +S KFG VQ++IW V KD+ F+ ++GW E+++ R +P EF W
Sbjct: 153 DKLWHTHSKGKFGLFVQRQIWLSVGKDWGKFWQKIGW------EVDRIPCR-YPEEFQWN 205
Query: 208 NGKETPVGHLPLTNALRGTQLLASILNHPAFE 239
+ P GHLPL N LRG Q+L+++ H A+E
Sbjct: 206 S--HGPRGHLPLFNQLRGVQVLSALFTHKAWE 235
>sp|P51202|YCF53_PORPU Uncharacterized protein ycf53 OS=Porphyra purpurea GN=ycf53 PE=3
SV=1
Length = 238
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 84/135 (62%), Gaps = 9/135 (6%)
Query: 105 NFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQ 164
N AD+ T++ LI LAG + R +++F++++ I DL+ ID+LW +S KFG+ VQ
Sbjct: 111 NLIAADKLTQQKLIKLAGVDEKSRNWLYFTDIKKIPVEDLQTIDQLWNAHSKGKFGFFVQ 170
Query: 165 KKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALR 224
++IW + K++ F+ ++GW E+ + R +P EF W + P GHLPL N LR
Sbjct: 171 RQIWLALEKNWEQFWYKIGW------EINRVPCR-YPEEFHWNST--GPKGHLPLCNQLR 221
Query: 225 GTQLLASILNHPAFE 239
G Q+L+++ +H A++
Sbjct: 222 GVQVLSALFSHKAWD 236
>sp|P72583|YC53L_SYNY3 Ycf53-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0558 PE=1 SV=1
Length = 233
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 98/199 (49%), Gaps = 12/199 (6%)
Query: 40 LSNNNNTTTTTTTSANTMITFSSLSPSTTSSSSSSSQTSTTTTTTTTTTSEPISFDLLHQ 99
L+ N N T +L T ++ Q + T +++ I + L +
Sbjct: 42 LAKNVPLEKPVLAVGNVYQTLRNLEQETITTQL---QRNYPTGIFPLQSAQGIDYLPLQE 98
Query: 100 HLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKF 159
L +Q+F ADE TR L LAG + +R +++F+EV+ DL I+ LW +S+ F
Sbjct: 99 ALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNF 158
Query: 160 GYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPL 219
G+SVQ+++W K+FT + ++GW K + + +P F W+ P GHLPL
Sbjct: 159 GFSVQRRLWLASGKEFTKLWPKIGW-KSGNV------WTRWPKGFTWD--LSAPQGHLPL 209
Query: 220 TNALRGTQLLASILNHPAF 238
N LRG ++ S+ HP +
Sbjct: 210 LNQLRGVRVAESLYRHPVW 228
>sp|O19887|YCF53_CYACA Uncharacterized protein ycf53 OS=Cyanidium caldarium GN=ycf53 PE=3
SV=1
Length = 237
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 85/142 (59%), Gaps = 8/142 (5%)
Query: 94 FDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQ 153
++ L L A NF +A++ T+++L+ LAGE S++R +++F++V I + ++ LW
Sbjct: 102 YETLESLLSANNFFEANKFTQQILLELAGEQSKQRNWMYFTDVHSINHQSVSDLNHLWEL 161
Query: 154 YSDNKFGYSVQKKIWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETP 213
YS FG+S+QK+IW VNK++ F+ ++GW+ ++ +P EF+W P
Sbjct: 162 YSQGNFGFSIQKRIWISVNKNWKKFWKKIGWINSNSKWLK------YPGEFMW--AVNAP 213
Query: 214 VGHLPLTNALRGTQLLASILNH 235
GHLPL N LRG +L I ++
Sbjct: 214 PGHLPLFNQLRGVYVLEFIFDY 235
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,093,204
Number of Sequences: 539616
Number of extensions: 4401542
Number of successful extensions: 97428
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 413
Number of HSP's that attempted gapping in prelim test: 39920
Number of HSP's gapped (non-prelim): 30670
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)