Query 023340
Match_columns 283
No_of_seqs 154 out of 324
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y6i_A Mg-chelatase cofactor G 100.0 6.3E-59 2.2E-63 420.6 14.1 146 87-241 86-231 (233)
2 1z3x_A Putative cytidyltransfe 100.0 1.2E-58 4E-63 419.9 13.3 145 87-240 94-238 (238)
3 4eba_G RNA15, KLLA0F09383P; HA 21.7 17 0.00056 31.6 -0.4 43 110-160 130-172 (174)
4 3hzr_A Tryptophanyl-tRNA synth 13.6 1.4E+02 0.0049 28.2 3.9 54 87-150 20-76 (386)
5 1avo_B 11S regulator; proteaso 13.2 1.3E+02 0.0043 25.0 2.9 26 148-173 29-60 (140)
6 3mqp_B Phorbol-12-myristate-13 13.0 42 0.0014 20.7 -0.0 13 175-187 11-23 (25)
7 1yt3_A Ribonuclease D, RNAse D 11.4 6E+02 0.02 23.0 7.2 59 94-152 163-222 (375)
8 3li6_A Calcium-binding protein 11.2 2.8E+02 0.0097 17.3 3.7 46 89-137 14-59 (66)
9 2jm6_A NOXA; apoptosis, BCL-2, 11.2 47 0.0016 20.8 -0.2 14 174-187 10-23 (27)
10 2ffs_A Hypothetical protein PA 10.9 1.5E+02 0.0053 24.9 2.8 21 103-123 131-151 (157)
No 1
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=100.00 E-value=6.3e-59 Score=420.63 Aligned_cols=146 Identities=35% Similarity=0.725 Sum_probs=138.2
Q ss_pred CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHH
Q 023340 87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKK 166 (283)
Q Consensus 87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkq 166 (283)
.|++|+||++|+++|++|+|++||+||+++||++||+.++++|||+++||++|||+||++||+||++||+||||||||++
T Consensus 86 ~S~~gidY~~L~~lL~~~~wkeAD~eT~~lml~~ag~~~~~~g~l~~~di~~fPc~DL~tID~LW~~yS~GrFGFSVQk~ 165 (233)
T 1y6i_A 86 QSAQGIDYLPLQEALGSQDFETADEITRDKLCELAGPGASQRQWLYFTEVEKFPALDLHTINALWWLHSNGNFGFSVQRR 165 (233)
T ss_dssp CCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCTTCTTCSSCCHHHHTTSCHHHHHHHHHHHHHTTTTCSSHHHHHH
T ss_pred ccccCcCHHHHHHHHHhCCHHHHHHHHHHHHHHHhchhccccCCcCHHHHHhCCHHHHHHHHHHHHhccCCCcChHHHHH
Confidence 58999999999999999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCCCC
Q 023340 167 IWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEGM 241 (283)
Q Consensus 167 Iw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~~~ 241 (283)
||+++|++|++||++||||+++ +|..||++|+|++ +||+||||+.++|||+|||++||+||||+..
T Consensus 166 I~~~lgg~~~~f~~rVGWr~~~-------~W~~y~~~l~f~l--~AP~GHLP~~~~lrG~~l~~~ll~hpa~~~~ 231 (233)
T 1y6i_A 166 LWLASGKEFTKLWPKIGWKSGN-------VWTRWPKGFTWDL--SAPQGHLPLLNQLRGVRVAESLYRHPVWSQY 231 (233)
T ss_dssp HHHHTTTCHHHHHHHHTCCTTC-------CCSSCCCSCCCST--TSCTTCCSCCCCTTCTHHHHHHHTSTHHHHT
T ss_pred HHHHhCCCHHHhhhhcCCccCC-------ccccCcccceeeC--CCCCCCCCCccccchHHHHHHHHCCcccccc
Confidence 9999999999999999999865 3667888888755 6999999999999999999999999999764
No 2
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=100.00 E-value=1.2e-58 Score=419.93 Aligned_cols=145 Identities=38% Similarity=0.796 Sum_probs=137.0
Q ss_pred CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcchHHHHH
Q 023340 87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFGYSVQKK 166 (283)
Q Consensus 87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFGFSVQkq 166 (283)
.|++|+||++|+++|++|+|++||+||+++||++||+.++++|||+++||++|||+||++||+||++||+||||||||++
T Consensus 94 ~S~~gidY~~L~~lL~~~~wkeAD~eT~~lml~~ag~~~~~~g~l~~~di~~fPc~DL~tID~LW~~yS~GrFGFSVQk~ 173 (238)
T 1z3x_A 94 RSDRGVDYQELAKLLVAEKFEAADRLTTQKLCELAGPLAQKRRWLYFTEVEQLPIPDLQTIDQLWLAFSLGRFGYSVQRQ 173 (238)
T ss_dssp CCSSCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHCHHHHHHTSCCHHHHHTSCHHHHHHHHHHHHHTTTTCCSHHHHHH
T ss_pred ccccCCCHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccccccCCcCHHHHHhCCHHHHHHHHHHHHHccCCCcChHHHHH
Confidence 58999999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHhhhhcccccCCchhhccccccCCcceeeccCCCCCCCCcCccccccHHHHHHHHhcCCCCCC
Q 023340 167 IWEKVNKDFTNFFIRVGWMKKLDTEMEQYNYRAFPTEFIWENGKETPVGHLPLTNALRGTQLLASILNHPAFEG 240 (283)
Q Consensus 167 Iw~~v~~d~~~FgdrVGWrk~~d~e~~~~ny~~fp~ef~~~fsl~AP~GHLP~~~~lrG~qll~~l~~hpaf~~ 240 (283)
||+++|++|++|||+||||+++ .|..||++|+|++ +||+||||+.++|||+|||++||+||||+.
T Consensus 174 I~~~lgg~~~~f~~rVGWr~~~-------~W~~y~~~l~fsl--~AP~GHLP~~~~lrGv~l~~~ll~hpa~~~ 238 (238)
T 1z3x_A 174 LWLGCGQNWDRLWEKIGWRQGK-------RWPRYPNEFIWDL--SAPRGHLPLTNQLRGVQVLNALLNHPAWTA 238 (238)
T ss_dssp HHHHTTTCHHHHHHHTTCCBTT-------BCCCTTTTSCCST--TSCTTCCSCCCCTTCSHHHHHHHTCGGGGC
T ss_pred HHHHhCCCHHHhccccCCccCC-------eeccChhhceeeC--CCCCCCCCcCcccccHHHHHHHHcCccccC
Confidence 9999999999999999999864 3667888888755 699999999999999999999999999963
No 3
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=21.66 E-value=17 Score=31.57 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHhhhcCCCcc
Q 023340 110 DEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWRQYSDNKFG 160 (283)
Q Consensus 110 D~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~kYS~GkFG 160 (283)
+.+-..|+.++.. |..++|..+|-+.=..|.+|=.+..+|-||
T Consensus 130 ~~~q~~LL~qVl~--------Lt~~qI~~LP~deR~~I~~LR~qi~kG~~g 172 (174)
T 4eba_G 130 DEEKVDLLRQVLQ--------LQDSDIAMLPQDEKMAVWELKQRAMKGEFG 172 (174)
T ss_dssp ---------------------------------------------------
T ss_pred CHHHHHHHHHHHc--------CCHHHHHhCCHHHHHHHHHHHHHHHcCCCC
Confidence 4444455555442 677899999999999999999999999999
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=13.62 E-value=1.4e+02 Score=28.25 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=35.8
Q ss_pred CCCCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCccc---ccccccchhhhccCchHhHHHHHHH
Q 023340 87 TTSEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEAS---EKRGYVFFSEVQFIAEADLKAIDEL 150 (283)
Q Consensus 87 ~S~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~---~~~GyL~~~dI~nfPCeDLrtIDqL 150 (283)
+++.++||.+|-+..-.....++ ....+-++.|+.. .+||. -|.|.|+..|-.+
T Consensus 20 ~~~~~~dy~kl~~~fg~~~~~~~---~~~~~~~~~~~~~h~~l~RG~-------i~~~~d~~~ll~~ 76 (386)
T 3hzr_A 20 FTTRTTDYNQLINSVGINAITPQ---QIQRIEKLSGKAPHHYLSRGV-------FLAEKSLDKFLDD 76 (386)
T ss_dssp CCSSSCCSHHHHHHHTCEECCHH---HHHHHHHHHTSCCCHHHHTTS-------EEEESSHHHHHHH
T ss_pred cCcccccHHHHHHHhCCCcCCHH---HHHHHHHHhCCCchHHHHCcC-------ccccccHHHHHHH
Confidence 46789999999988877776544 3344556677632 25665 3578887776444
No 5
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=13.16 E-value=1.3e+02 Score=24.99 Aligned_cols=26 Identities=35% Similarity=0.639 Sum_probs=21.3
Q ss_pred HHHHhhhc------CCCcchHHHHHHHHHhcc
Q 023340 148 DELWRQYS------DNKFGYSVQKKIWEKVNK 173 (283)
Q Consensus 148 DqLW~kYS------~GkFGFSVQkqIw~~v~~ 173 (283)
=+.|+.+- +..||=+||.++...+..
T Consensus 29 vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~ 60 (140)
T 1avo_B 29 VTTWLQLQIPRIEDGNNFGVAVQEKVFELMTS 60 (140)
T ss_dssp HHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcccCCCchhHHHHHHHHHHHHH
Confidence 46799875 667999999999988764
No 6
>3mqp_B Phorbol-12-myristate-13-acetate-induced protein 1; BCL-2 family, structural genomics, PSI-2, protein structure initiative; 2.24A {Homo sapiens} PDB: 2nla_B
Probab=12.96 E-value=42 Score=20.69 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=10.6
Q ss_pred HHHHhhhhccccc
Q 023340 175 FTNFFIRVGWMKK 187 (283)
Q Consensus 175 ~~~FgdrVGWrk~ 187 (283)
..+|||++.||.+
T Consensus 11 lrr~gdkln~rqk 23 (25)
T 3mqp_B 11 LRRFGDKLNFRQK 23 (26)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHhHHHHHHHh
Confidence 4589999999875
No 7
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=11.36 E-value=6e+02 Score=22.99 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=30.2
Q ss_pred hHHHHHHHHhcCHHHH-HHHHHHHHHHHhCcccccccccchhhhccCchHhHHHHHHHHh
Q 023340 94 FDLLHQHLQAQNFRQA-DEETRRLLIALAGEASEKRGYVFFSEVQFIAEADLKAIDELWR 152 (283)
Q Consensus 94 Yt~L~~LLaagkWkeA-D~ET~~LmL~iagr~~~~~GyL~~~dI~nfPCeDLrtIDqLW~ 152 (283)
|..|.+.|++..+.+- -+|-...+.....+.....-|.......++.-.++..+..||.
T Consensus 163 ~~~L~~~L~~~g~~~l~~~e~E~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~ 222 (375)
T 1yt3_A 163 TAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD 222 (375)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCCGGGGGGGSTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhhcccCCCchHHHHhccCcccCCHHHHHHHHHHHH
Confidence 4566666665543333 4444444444443221233355555555566666666666664
No 8
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=11.24 E-value=2.8e+02 Score=17.26 Aligned_cols=46 Identities=11% Similarity=0.193 Sum_probs=27.9
Q ss_pred CCCCChHHHHHHHHhcCHHHHHHHHHHHHHHHhCcccccccccchhhhc
Q 023340 89 SEPISFDLLHQHLQAQNFRQADEETRRLLIALAGEASEKRGYVFFSEVQ 137 (283)
Q Consensus 89 ~~gidYt~L~~LLaagkWkeAD~ET~~LmL~iagr~~~~~GyL~~~dI~ 137 (283)
...|+...|+.+|..-...-. .+..+.|++.++. ...|.|++++..
T Consensus 14 ~G~i~~~e~~~~l~~~~~~~~-~~~~~~~~~~~D~--~~~g~i~~~ef~ 59 (66)
T 3li6_A 14 DGAVSYEEVKAFVSKKRAIKN-EQLLQLIFKSIDA--DGNGEIDQNEFA 59 (66)
T ss_dssp SSSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHCT--TCSSSCCHHHHH
T ss_pred CCcccHHHHHHHHHHccCCCc-HHHHHHHHHHHCC--CCCCCCCHHHHH
Confidence 446788888888876543333 3344555556654 346777776653
No 9
>2jm6_A NOXA; apoptosis, BCL-2, helical bundle, BH3-only; NMR {Mus musculus}
Probab=11.17 E-value=47 Score=20.81 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=11.0
Q ss_pred cHHHHhhhhccccc
Q 023340 174 DFTNFFIRVGWMKK 187 (283)
Q Consensus 174 d~~~FgdrVGWrk~ 187 (283)
.+.+|||++.||.+
T Consensus 10 qlr~~gdkln~rqk 23 (27)
T 2jm6_A 10 QLRRIGDKVNLRQK 23 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHH
Confidence 45689999999875
No 10
>2ffs_A Hypothetical protein PA1206; 7-stranded beta sheet, C-terminal helix, structural genomics protein structure initiative; HET: MSE; 2.50A {Pseudomonas aeruginosa} SCOP: d.129.3.7
Probab=10.92 E-value=1.5e+02 Score=24.92 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=18.3
Q ss_pred hcCHHHHHHHHHHHHHHHhCc
Q 023340 103 AQNFRQADEETRRLLIALAGE 123 (283)
Q Consensus 103 agkWkeAD~ET~~LmL~iagr 123 (283)
..-|++||+.|.++|.++++.
T Consensus 131 ~~ay~~ad~~Tv~~iRel~~~ 151 (157)
T 2ffs_A 131 KQAYIAMDVETIATIRDRFGA 151 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 455899999999999999974
Done!