Query 023341
Match_columns 283
No_of_seqs 204 out of 427
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023341.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023341hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bl5_A MGC83862 protein, quaki 100.0 9.7E-50 3.3E-54 337.4 6.5 130 135-264 2-131 (140)
2 1k1g_A SF1-BO isoform; splicin 100.0 1.1E-41 3.6E-46 284.9 8.9 124 132-262 4-130 (131)
3 2yqr_A KIAA0907 protein; struc 100.0 3.3E-29 1.1E-33 206.5 8.6 102 132-246 9-111 (119)
4 3k6t_A Female germline-specifi 99.1 1.6E-11 5.6E-16 89.6 2.2 45 28-72 6-50 (60)
5 4dnn_A Protein quaking, MQKI, 99.1 1.9E-11 6.5E-16 87.7 0.3 42 29-70 4-48 (56)
6 2opv_A KHSRP protein; KH domai 98.9 2.5E-09 8.7E-14 81.8 7.6 71 135-233 14-84 (85)
7 1dtj_A RNA-binding neurooncolo 98.9 3.9E-09 1.3E-13 78.6 7.4 73 134-233 2-74 (76)
8 2xa6_A KH domain-containing\,R 98.9 1.8E-09 6.1E-14 72.9 4.5 37 26-65 4-40 (41)
9 1x4m_A FAR upstream element bi 98.8 1.7E-08 5.8E-13 78.7 7.2 73 134-234 14-86 (94)
10 2hh2_A KH-type splicing regula 98.7 3E-08 1E-12 79.2 6.8 72 136-234 8-79 (107)
11 1x4n_A FAR upstream element bi 98.7 2.6E-08 8.8E-13 77.4 6.0 69 135-233 15-83 (92)
12 1ec6_A RNA-binding protein NOV 98.7 1.7E-08 5.7E-13 77.4 4.5 73 134-233 2-74 (87)
13 1zzk_A Heterogeneous nuclear r 98.7 3.7E-08 1.3E-12 74.8 6.3 69 135-233 7-75 (82)
14 1we8_A Tudor and KH domain con 98.7 4E-08 1.4E-12 77.9 6.7 73 133-233 13-85 (104)
15 2p2r_A Poly(RC)-binding protei 98.6 2.1E-08 7.1E-13 74.9 4.6 70 134-233 4-73 (76)
16 2dgr_A Ring finger and KH doma 98.6 4.1E-08 1.4E-12 75.5 6.3 66 135-233 10-75 (83)
17 1vig_A Vigilin; RNA-binding pr 98.6 7.5E-08 2.6E-12 71.5 6.6 65 136-232 6-70 (71)
18 1wvn_A Poly(RC)-binding protei 98.6 4.7E-08 1.6E-12 74.1 5.5 69 135-233 6-74 (82)
19 2ctk_A Vigilin; K homology typ 98.6 4.1E-08 1.4E-12 78.2 5.3 70 132-233 14-83 (104)
20 2hh3_A KH-type splicing regula 98.6 4.9E-08 1.7E-12 78.2 5.0 68 136-233 12-79 (106)
21 2axy_A Poly(RC)-binding protei 98.6 4.6E-08 1.6E-12 72.9 4.4 67 135-233 5-71 (73)
22 2cte_A Vigilin; K homology typ 98.6 6.7E-08 2.3E-12 75.4 5.4 67 135-233 17-83 (94)
23 1j5k_A Heterogeneous nuclear r 98.5 6.6E-08 2.3E-12 74.5 4.8 70 134-233 13-82 (89)
24 2ctm_A Vigilin; K homology typ 98.4 2.1E-07 7.2E-12 73.0 5.4 67 136-233 18-84 (95)
25 2ctl_A Vigilin; K homology typ 98.4 3.6E-07 1.2E-11 71.8 6.4 69 136-233 18-86 (97)
26 3krm_A Insulin-like growth fac 98.3 7.3E-07 2.5E-11 74.5 5.4 72 134-233 84-155 (163)
27 1j4w_A FUSE binding protein; s 98.2 1.8E-06 6.1E-11 73.1 6.5 70 136-232 105-174 (174)
28 2jvz_A KH type-splicing, FAR u 98.2 4.6E-06 1.6E-10 69.3 7.6 72 136-235 3-74 (164)
29 2jvz_A KH type-splicing, FAR u 98.1 1.9E-06 6.4E-11 71.7 4.0 67 137-233 93-159 (164)
30 2ctj_A Vigilin; K homology typ 98.1 1.9E-06 6.7E-11 67.7 3.9 65 137-233 19-84 (95)
31 2jzx_A Poly(RC)-binding protei 98.0 2.7E-06 9.1E-11 70.8 4.1 70 135-233 89-158 (160)
32 2jzx_A Poly(RC)-binding protei 98.0 4.3E-06 1.5E-10 69.5 4.8 68 133-232 3-70 (160)
33 1j4w_A FUSE binding protein; s 98.0 4E-06 1.4E-10 70.9 4.2 68 136-233 4-71 (174)
34 2anr_A Neuro-oncological ventr 98.0 3.6E-06 1.2E-10 71.3 3.6 72 135-234 104-175 (178)
35 2anr_A Neuro-oncological ventr 97.9 9.8E-06 3.3E-10 68.6 5.4 74 135-235 6-79 (178)
36 2cpq_A FragIle X mental retard 97.9 8.3E-06 2.8E-10 64.1 4.4 64 136-233 16-80 (91)
37 3krm_A Insulin-like growth fac 97.9 1.9E-05 6.6E-10 65.8 6.0 38 136-179 4-41 (163)
38 3u1k_A Polyribonucleotide nucl 97.8 1.6E-05 5.4E-10 80.9 5.3 68 130-232 562-629 (630)
39 1tua_A Hypothetical protein AP 97.7 3.5E-05 1.2E-09 67.8 6.1 54 150-234 107-160 (191)
40 2e3u_A PH-DIM2P, hypothetical 97.6 5.1E-05 1.8E-09 67.9 5.0 53 151-234 139-191 (219)
41 2e3u_A PH-DIM2P, hypothetical 97.2 0.00033 1.1E-08 62.6 4.9 71 133-233 32-102 (219)
42 2qnd_A FMR1 protein; KH domain 96.9 0.0014 4.7E-08 54.5 5.7 71 137-233 69-141 (144)
43 4aid_A Polyribonucleotide nucl 96.7 0.00034 1.2E-08 72.3 1.2 69 132-235 567-635 (726)
44 2ctf_A Vigilin; K homology typ 96.3 0.0088 3E-07 47.2 6.5 64 135-233 27-91 (102)
45 3n89_A Defective in GERM LINE 96.0 0.013 4.3E-07 56.4 7.4 73 134-231 29-103 (376)
46 2qnd_A FMR1 protein; KH domain 94.6 0.035 1.2E-06 45.9 4.7 30 136-171 5-34 (144)
47 3cdi_A Polynucleotide phosphor 94.1 0.009 3.1E-07 61.7 0.0 43 133-181 558-600 (723)
48 1tua_A Hypothetical protein AP 93.2 0.098 3.4E-06 45.7 5.1 36 137-178 6-41 (191)
49 1e3p_A Guanosine pentaphosphat 92.1 0.0067 2.3E-07 63.0 -4.6 41 134-180 597-637 (757)
50 3v69_A Protein filia; RNA-bind 90.8 0.078 2.7E-06 44.5 1.4 29 149-177 64-92 (140)
51 3n89_A Defective in GERM LINE 84.7 1.1 3.7E-05 43.0 5.3 63 150-232 195-259 (376)
52 4fxw_B Splicing factor 1; UHM, 81.5 0.14 4.8E-06 42.2 -1.9 67 58-127 51-119 (124)
53 2z0s_A Probable exosome comple 78.7 9 0.00031 33.8 8.8 69 150-245 157-225 (235)
54 2cxc_A NUSA; transcription ter 70.3 1.6 5.5E-05 36.4 1.6 29 150-178 45-73 (144)
55 2ba0_A Archeal exosome RNA bin 51.4 31 0.001 30.3 6.5 73 150-251 145-217 (229)
56 2je6_I RRP4, exosome complex R 48.8 2.7 9.1E-05 37.8 -0.9 68 150-244 164-231 (251)
57 2asb_A Transcription elongatio 45.3 7.8 0.00027 35.2 1.6 34 145-178 121-155 (251)
58 3k5i_A Phosphoribosyl-aminoimi 41.5 44 0.0015 31.0 6.2 50 164-229 350-399 (403)
59 1k0r_A NUSA; two component arr 39.9 11 0.00037 36.1 1.7 34 145-178 244-278 (366)
60 2pt7_G HP1451, hypothetical pr 33.6 12 0.0004 31.5 0.8 20 152-171 44-63 (152)
61 2nn6_G Exosome complex exonucl 31.4 21 0.00072 32.8 2.2 54 150-229 219-272 (289)
62 3iev_A GTP-binding protein ERA 28.6 20 0.00068 32.0 1.5 41 132-177 237-285 (308)
63 1xao_A YDJ1, mitochondrial pro 27.0 84 0.0029 24.6 4.8 50 169-234 47-98 (121)
64 3u42_A 50S ribosomal protein L 26.0 53 0.0018 29.0 3.8 66 147-232 122-201 (229)
65 3eth_A Phosphoribosylaminoimid 25.8 45 0.0016 30.8 3.4 36 163-214 291-326 (355)
66 1hh2_P NUSA, N utilization sub 25.7 30 0.001 32.6 2.1 34 145-178 240-274 (344)
67 2cxc_A NUSA; transcription ter 25.2 16 0.00053 30.4 0.1 37 135-177 103-139 (144)
68 2ijl_A AGR_C_4647P, molybdenum 23.7 99 0.0034 24.9 4.7 19 162-180 58-76 (135)
69 1wjw_A Phosphoacetylglucosamin 23.3 2.3E+02 0.0077 21.8 6.6 52 161-232 45-97 (112)
70 1i2a_A 50S ribosomal protein L 21.0 1.2E+02 0.0041 26.4 5.0 61 151-232 118-189 (219)
71 3isp_A HTH-type transcriptiona 20.2 45 0.0015 28.1 2.0 19 162-180 40-58 (303)
No 1
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=100.00 E-value=9.7e-50 Score=337.38 Aligned_cols=130 Identities=45% Similarity=0.845 Sum_probs=125.7
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.++|||||+++||+|||||+||||||+|+|+||++|||||.|||+||+||.++|+.++|+|+|+|++|||||+|+|++++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHHHHcCccCCCCCCC
Q 023341 215 NIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGP 264 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~p~~e~~D~~K~~QL~ELA~lNGt~r~~~~~~ 264 (283)
++|+++|++|+++|++||.|++|++|++|++||+|||+||||||++..+.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~~e~~de~K~~QL~eLA~lNGt~r~~~~~~ 131 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPAAEGEDSLKKMKLMELAILNGTYRDANLKS 131 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCSSSSSHHHHHHHTGGGSSSTTTSGGGGSC
T ss_pred hhHHHHHHHHHHHHHHHCCCCCcchhHHHHHHHHHHHHhcCCcCCCcccc
Confidence 99999999999999999999999999999999999999999999987544
No 2
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=100.00 E-value=1.1e-41 Score=284.94 Aligned_cols=124 Identities=39% Similarity=0.656 Sum_probs=108.5
Q ss_pred ceeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023341 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 211 (283)
Q Consensus 132 ~vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~ 211 (283)
..|.++||+||+++||+|||||+||||+|+|+|+||++|||||.|||+||+++.+++ . .+...|+|+++||||+|+|+
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~-~-~~~~~~~~~~e~lhV~I~a~ 81 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVG-R-KDGQMLPGEDEPLHALVTAN 81 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSS-S-CCCCCSCCSSCCEEEEEEES
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCccccccccc-c-cccccccccCCCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999997654 1 22245789999999999998
Q ss_pred CchhhHHHHHHHHHHHHHHccCC---CCCchHHHHHHHHHHHHHHcCccCCCCC
Q 023341 212 LPANIVDIRLRQAQEIIEELLKP---VDESQDYIKRQQLRELAMLNSNFREDSP 262 (283)
Q Consensus 212 ~~~~~~~~rl~~A~e~Ie~LL~p---~~e~~D~~K~~QL~ELA~lNGt~r~~~~ 262 (283)
+++ ++++|+++|+.||.+ +|+++|++|++||+|||+||||||++++
T Consensus 82 ~~e-----~~~~A~~~I~~ll~~~~~~p~~~d~~k~~Ql~eLa~~nGt~r~~~~ 130 (131)
T 1k1g_A 82 TME-----NVKKAVEQIRNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDN 130 (131)
T ss_dssp SHH-----HHHHHHHHHHHHHTTTTSCCTTSSGGGGGGGHHHHHHHTCCC----
T ss_pred CHH-----HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHcCcCCCcCC
Confidence 864 789999999999975 7899999999999999999999999865
No 3
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.96 E-value=3.3e-29 Score=206.51 Aligned_cols=102 Identities=25% Similarity=0.359 Sum_probs=90.4
Q ss_pred ceeeEEEEecCCC-CCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 023341 132 TVKRILRLEIPVD-TYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEA 210 (283)
Q Consensus 132 ~vk~~~kv~IPv~-~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a 210 (283)
+...++|||||++ +||+|||||+||||+|+|+|+||++|||||.|||+||++... ..-++++|||||+|++
T Consensus 9 ~~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~--------~~~~e~~e~l~V~I~a 80 (119)
T 2yqr_A 9 MHYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEP--------ASGREAFEPMYIYISH 80 (119)
T ss_dssp CSCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCT--------TTSSCCSSBCEEEEEE
T ss_pred eeEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCcccccc--------ccccccCCCcEEEEEe
Confidence 5567899999999 699999999999999999999999999999999999987432 1124689999999999
Q ss_pred cCchhhHHHHHHHHHHHHHHccCCCCCchHHHHHHH
Q 023341 211 DLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQ 246 (283)
Q Consensus 211 ~~~~~~~~~rl~~A~e~Ie~LL~p~~e~~D~~K~~Q 246 (283)
.+++ .+++|+++|+.||.++.+..+.+|++|
T Consensus 81 ~~~e-----~i~~A~~~Ie~Ll~~v~~~~~~~~~q~ 111 (119)
T 2yqr_A 81 PKPE-----GLAAAKKLCENLLQTVHAEYSRFVNQI 111 (119)
T ss_dssp SSHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH-----HHHHHHHHHHHHhhchHHHHHHHHHhh
Confidence 9875 789999999999999988888888776
No 4
>3k6t_A Female germline-specific tumor suppressor GLD-1; QUA1 homodimerization domain, helix-turn-helix motif, hydrophobic homodimer interface; 2.04A {Caenorhabditis elegans} PDB: 3kbl_A
Probab=99.12 E-value=1.6e-11 Score=89.61 Aligned_cols=45 Identities=31% Similarity=0.476 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhcCCCccchhHHHHHhhhhHHhhhccCCCCCC
Q 023341 28 DSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSGMMPNQGF 72 (283)
Q Consensus 28 ~~~YL~eLl~Ek~~L~~~~~~~~~~~rLL~~EI~RV~~~~~~~~~ 72 (283)
..+||++||+||.+|..|+++|.|+.|||++||+||+..|+|..+
T Consensus 6 ~~eYL~qLlkdKk~l~~~p~~f~HlerLLdeEI~RVR~~Lf~~~~ 50 (60)
T 3k6t_A 6 TVEYLADLVKEKKHLTLFPHMFSNVERLLDDEIGRVRVALFQTEF 50 (60)
T ss_dssp CHHHHHHHHHHHHHHTTSTTTCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 379999999999999999999999999999999999998877544
No 5
>4dnn_A Protein quaking, MQKI, QKI; helix-turn-helix, hydrophobic homodimer interface, perpendic stacking of protomers, developmental protein, RNA-binding; HET: MSE; 2.10A {Mus musculus}
Probab=99.05 E-value=1.9e-11 Score=87.72 Aligned_cols=42 Identities=29% Similarity=0.466 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhcCCCcc---chhHHHHHhhhhHHhhhccCCCC
Q 023341 29 SQYLSELLAEHQKLGPFTQ---VLPICSRLLTQEIFRVSGMMPNQ 70 (283)
Q Consensus 29 ~~YL~eLl~Ek~~L~~~~~---~~~~~~rLL~~EI~RV~~~~~~~ 70 (283)
.+||++||+||.+|+.||+ +|.|++||||+||.||+..|+|.
T Consensus 4 ~eYL~qLlkdkk~l~~~Pn~~~iF~H~eRLldEEI~rVR~~Lfq~ 48 (56)
T 4dnn_A 4 PDYLMQLMNDKKLMSSLPNFSGIFNHLERLLDEEISRVRKDMYND 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHTTCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999998 99999999999999999887653
No 6
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=98.92 E-value=2.5e-09 Score=81.77 Aligned_cols=71 Identities=23% Similarity=0.418 Sum_probs=56.7
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
++.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...|+.. ...+-+|.|++ +++
T Consensus 14 ~~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~----------------~~~er~v~I~G-~~~ 70 (85)
T 2opv_A 14 TVQEIMIP------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY 70 (85)
T ss_dssp EEEEEEEC------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS----------------TTSCEEEEEEE-CHH
T ss_pred EEEEEEeC------hhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC----------------CCCceEEEEEe-CHH
Confidence 45678898 47899999999999999999999999998755411 12344789998 654
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|+.++.
T Consensus 71 -----~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 71 -----KVQQACEMVMDILR 84 (85)
T ss_dssp -----HHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHhc
Confidence 67899999999874
No 7
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=98.89 E-value=3.9e-09 Score=78.56 Aligned_cols=73 Identities=29% Similarity=0.471 Sum_probs=56.1
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
+.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...+...+ -..+-.|.|++. +
T Consensus 2 ~~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---------------~~~~~~v~I~G~-~ 59 (76)
T 1dtj_A 2 KELVEMAVP------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---------------GTRNRRVTITGS-P 59 (76)
T ss_dssp CEEEEEEEE------TTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---------------TCCEEEEEEEES-H
T ss_pred ceEEEEEEC------hHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---------------CCceeEEEEEeC-H
Confidence 446678898 478999999999999999999999999986432111 012347888875 4
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
+ .+++|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 60 A-----ATQAAQYLISQRVT 74 (76)
T ss_dssp H-----HHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 67899999999875
No 8
>2xa6_A KH domain-containing\,RNA-binding\,signal transduction-associated protein 1; transcription, STAR proteins, CD44, cell cycle; NMR {Homo sapiens}
Probab=98.87 E-value=1.8e-09 Score=72.94 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=32.9
Q ss_pred chHHHHHHHHHHHHhhcCCCccchhHHHHHhhhhHHhhhc
Q 023341 26 NIDSQYLSELLAEHQKLGPFTQVLPICSRLLTQEIFRVSG 65 (283)
Q Consensus 26 ~~~~~YL~eLl~Ek~~L~~~~~~~~~~~rLL~~EI~RV~~ 65 (283)
+..++||.||++||.+|+|. |.||.|||++||.|+..
T Consensus 4 ~~~~kyLpeL~aEk~sLdPs---f~Ha~RLl~~EIek~qk 40 (41)
T 2xa6_A 4 EPENKYLPELMAEKDSLDPS---FTHAMQLLTAEIEKIQK 40 (41)
T ss_dssp -CHHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhhhccCch---HHHHHHHHHHHHHHHHc
Confidence 44689999999999999994 59999999999999875
No 9
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.75 E-value=1.7e-08 Score=78.72 Aligned_cols=73 Identities=21% Similarity=0.423 Sum_probs=57.8
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
..+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-..|... ...+-.|.|++ ++
T Consensus 14 ~~~~~i~Ip------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~r~v~I~G-~~ 70 (94)
T 1x4m_A 14 NAVQEIMIP------ASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN----------------TGADKPLRITG-DP 70 (94)
T ss_dssp CEEEEEEEC------HHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS----------------SCSCEEEEEEE-CT
T ss_pred cEEEEEEEC------hhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC----------------CCCceEEEEEe-CH
Confidence 356678899 57999999999999999999999999998654211 11345788988 55
Q ss_pred hhhHHHHHHHHHHHHHHccCC
Q 023341 214 ANIVDIRLRQAQEIIEELLKP 234 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~p 234 (283)
+ .+++|+++|+.++..
T Consensus 71 ~-----~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 71 Y-----KVQQAKEMVLELIRD 86 (94)
T ss_dssp T-----THHHHHHHHHHHHCC
T ss_pred H-----HHHHHHHHHHHHHhc
Confidence 4 578999999999874
No 10
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.68 E-value=3e-08 Score=79.20 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=54.6
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
+.+|.|| -++||+|||++|.|+|+|+++|||+|.|.....-. ....+=.|.|++ +++
T Consensus 8 ~~~i~IP------~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~---------------~~~~~r~V~I~G-~~e- 64 (107)
T 2hh2_A 8 EMTFSIP------THKCGLVIGRGGENVKAINQQTGAFVEISRQLPPN---------------GDPNFKLFIIRG-SPQ- 64 (107)
T ss_dssp CEEEEEE------GGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTT---------------CCTTEEEEEEES-CHH-
T ss_pred eEEEEEC------HHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCC---------------CCCCceEEEEEC-CHH-
Confidence 4568888 57899999999999999999999999998542100 011223677877 443
Q ss_pred hHHHHHHHHHHHHHHccCC
Q 023341 216 IVDIRLRQAQEIIEELLKP 234 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~p 234 (283)
.+++|+++|+.++.-
T Consensus 65 ----~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 65 ----QIDHAKQLIEEKIEG 79 (107)
T ss_dssp ----HHHHHHHHHHHHSCS
T ss_pred ----HHHHHHHHHHHHHhc
Confidence 688999999999873
No 11
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=98.67 E-value=2.6e-08 Score=77.39 Aligned_cols=69 Identities=16% Similarity=0.465 Sum_probs=54.4
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|..... . ..+-.|.|++. ++
T Consensus 15 ~~~~i~Ip------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~---g---------------~~~r~v~I~G~-~e 69 (92)
T 1x4n_A 15 MTEEYKVP------DGMVGFIIGRGGEQISRIQQESGCKIQIAPDSG---G---------------LPERSCMLTGT-PE 69 (92)
T ss_dssp EEEEEEEE------HHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCT---T---------------CSEEEEEEEEC-HH
T ss_pred EEEEEEEC------hHHcceeECCCchHHHHHHHHhCCEEEEcCCCC---C---------------CCccEEEEEeC-HH
Confidence 45678898 579999999999999999999999999986421 0 11237888875 43
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|+.++.
T Consensus 70 -----~v~~A~~~I~~~i~ 83 (92)
T 1x4n_A 70 -----SVQSAKRLLDQIVE 83 (92)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 67889999999875
No 12
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=98.66 E-value=1.7e-08 Score=77.42 Aligned_cols=73 Identities=30% Similarity=0.521 Sum_probs=55.2
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
|.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-..+.... | ..+=.|.|++. +
T Consensus 2 k~t~~i~IP------~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~--------g-------~~~r~v~I~G~-~ 59 (87)
T 1ec6_A 2 KELVEIAVP------ENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP--------G-------TRNRRVTITGS-P 59 (87)
T ss_dssp CSEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST--------T-------SCEEEEEEESS-H
T ss_pred ceEEEEEEC------hHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC--------C-------CCceEEEEEcC-H
Confidence 345678888 579999999999999999999999999986431111 1 12236778774 3
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
+ .+.+|.++|+.++.
T Consensus 60 ~-----~v~~A~~~I~~~i~ 74 (87)
T 1ec6_A 60 A-----ATQAAQYLISQRVT 74 (87)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHh
Confidence 3 67899999999986
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=98.66 E-value=3.7e-08 Score=74.75 Aligned_cols=69 Identities=20% Similarity=0.402 Sum_probs=53.2
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+.++.|| -+++|+|||++|.|+|+|+++|||+|.|...- ++ ..+-.|.|++ +++
T Consensus 7 ~~~~i~Vp------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~--------------~~----~~~~~v~I~G-~~~ 61 (82)
T 1zzk_A 7 ITTQVTIP------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL--------------EG----SEDRIITITG-TQD 61 (82)
T ss_dssp EEEEEEEE------TTTGGGGTCGGGHHHHHHHHHHCCEEEECCTT--------------SC----SSEEEEEEEE-CHH
T ss_pred EEEEEEEC------hHhcCeeECCCchHHHHHHHHHCCEEEEcCCC--------------CC----CCceEEEEEe-CHH
Confidence 45678899 47899999999999999999999999997420 00 1223788888 343
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|+.++.
T Consensus 62 -----~v~~A~~~I~~~i~ 75 (82)
T 1zzk_A 62 -----QIQNAQYLLQNSVK 75 (82)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHH
Confidence 67899999998875
No 14
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=98.65 E-value=4e-08 Score=77.88 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=56.8
Q ss_pred eeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 023341 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 212 (283)
Q Consensus 133 vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~ 212 (283)
..++.+|.|| -+++|+|||++|.|+|+|+++|||+|.|-...... ..++=.|.|++..
T Consensus 13 ap~~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~----------------~~~~~~V~I~G~~ 70 (104)
T 1we8_A 13 TPVFEQLSVP------QRSVGRIIGRGGETIRSICKASGAKITCDKESEGT----------------LLLSRLIKISGTQ 70 (104)
T ss_dssp CEEEEEEEEE------TTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS----------------SSSEEEEEEEEEH
T ss_pred CCEEEEEEEC------hhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC----------------CCCcceEEEEcCH
Confidence 4466788999 57899999999999999999999999997542100 1123478888754
Q ss_pred chhhHHHHHHHHHHHHHHccC
Q 023341 213 PANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 213 ~~~~~~~rl~~A~e~Ie~LL~ 233 (283)
. .+++|+++|+.++.
T Consensus 71 ~------~v~~A~~~I~~~i~ 85 (104)
T 1we8_A 71 K------EVAAAKHLILEKVS 85 (104)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHh
Confidence 2 57899999999986
No 15
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=98.65 E-value=2.1e-08 Score=74.92 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=55.2
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
..+.++.|| -+++|.|||++|.++|+|+++|||+|.|... .+ ...+=.|.|++. +
T Consensus 4 ~~~~~i~Ip------~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~---------------~~~~~~v~I~G~-~ 58 (76)
T 2p2r_A 4 TTSHELTIP------NDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VE---------------GSTDRQVTITGS-A 58 (76)
T ss_dssp CEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CT---------------TCSEEEEEEEEC-H
T ss_pred ceEEEEEEC------hHHcceEECCCChHHHHHHHHHCCEEEEcCC---CC---------------CCCeEEEEEEeC-H
Confidence 345678898 5799999999999999999999999999752 00 112337888885 4
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
+ .+++|.++|+.++.
T Consensus 59 ~-----~v~~A~~~I~~~i~ 73 (76)
T 2p2r_A 59 A-----SISLAQYLINVRLS 73 (76)
T ss_dssp H-----HHHHHHHHHHHHHT
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 67899999999886
No 16
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=4.1e-08 Score=75.51 Aligned_cols=66 Identities=23% Similarity=0.534 Sum_probs=51.2
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+..|.|| .+++|.|||++|.|+|+||++|||+|.|-.++ +++ .|.|++.. +
T Consensus 10 ~~~~i~VP------~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~--------------------~~~-~v~ItG~~-e 61 (83)
T 2dgr_A 10 TTIQVRVP------YRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD--------------------KEP-VFAVTGMP-E 61 (83)
T ss_dssp EEEEEECC------HHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS--------------------SCC-EEEEEECT-T
T ss_pred eEEEEEeC------hHHeeeeECCCchHHHHHHHHhCCeEEecCCC--------------------CCC-eEEEEcCH-H
Confidence 45668888 59999999999999999999999999996421 111 47777754 4
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|.++|+.++.
T Consensus 62 -----~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 62 -----NVDRAREEIEAHIT 75 (83)
T ss_dssp -----THHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 46789999988653
No 17
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=98.61 E-value=7.5e-08 Score=71.47 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
...+.|| ..++|+||||+|.++|+|+++|||+|.|--.|+ .+=.|.|++. ++
T Consensus 6 ~~~i~I~------~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~--------------------~~~~V~I~G~-~~- 57 (71)
T 1vig_A 6 YVEINID------HKFHRHLIGKSGANINRIKDQYKVSVRIPPDSE--------------------KSNLIRIEGD-PQ- 57 (71)
T ss_dssp EEEEEEC------SSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCS--------------------SSEEEEEEES-SH-
T ss_pred EEEEEEC------HHHhhhhcCCCCccHHHHHHHHCCEEEECCCCC--------------------cccEEEEEcC-HH-
Confidence 3457787 688999999999999999999999999975442 0016888886 33
Q ss_pred hHHHHHHHHHHHHHHcc
Q 023341 216 IVDIRLRQAQEIIEELL 232 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL 232 (283)
.+++|+++|+.++
T Consensus 58 ----~v~~A~~~I~~i~ 70 (71)
T 1vig_A 58 ----GVQQAKRELLELA 70 (71)
T ss_dssp ----HHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHHh
Confidence 5789999999875
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=98.60 E-value=4.7e-08 Score=74.07 Aligned_cols=69 Identities=22% Similarity=0.382 Sum_probs=54.5
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+.++.|| -+++|.|||++|.++|+|+++|||+|.|.... + ...+=.|.|++.. +
T Consensus 6 ~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~---~---------------~~~~r~v~I~G~~-~ 60 (82)
T 1wvn_A 6 TTHELTIP------NNLIGCIIGRQGANINEIRQMSGAQIKIANPV---E---------------GSSGRQVTITGSA-A 60 (82)
T ss_dssp EEEEEEEE------GGGHHHHHCGGGHHHHHHHHHHCCEEEECCCC---T---------------TCSEEEEEEEECH-H
T ss_pred EEEEEEEc------hHhccceeCCCchhHHHHHHHhCCEEEEecCC---C---------------CCCceEEEEEcCH-H
Confidence 35678888 57999999999999999999999999997521 0 0123378888743 3
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|+.++.
T Consensus 61 -----~v~~A~~~I~~~i~ 74 (82)
T 1wvn_A 61 -----SISLAQYLINARLS 74 (82)
T ss_dssp -----HHHHHHHHHHHHTC
T ss_pred -----HHHHHHHHHHHHHH
Confidence 67899999999987
No 19
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.60 E-value=4.1e-08 Score=78.25 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=56.4
Q ss_pred ceeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023341 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 211 (283)
Q Consensus 132 ~vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~ 211 (283)
++.++..+.|| ..++|+||||+|.|+|+|+++|||+|.|--.|+. +=.|.|++.
T Consensus 14 ~ap~~~~i~Ip------~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~--------------------~~~V~I~G~ 67 (104)
T 2ctk_A 14 LVPVTIEVEVP------FDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQ--------------------SDIIAITGL 67 (104)
T ss_dssp SSCEEEEEECC------HHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTT--------------------CCEEEEEEC
T ss_pred hCCEEEEEEEC------hHHccceeCCCchHHHHHHHHHCCEEEecCCCCC--------------------cceEEEEcC
Confidence 34467788999 7889999999999999999999999999754430 117888885
Q ss_pred CchhhHHHHHHHHHHHHHHccC
Q 023341 212 LPANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 212 ~~~~~~~~rl~~A~e~Ie~LL~ 233 (283)
. + .+++|++.|+.++.
T Consensus 68 ~-e-----~v~~A~~~I~~i~~ 83 (104)
T 2ctk_A 68 A-A-----NLDRAKAGLLERVK 83 (104)
T ss_dssp H-H-----HHHHHHHHHHHHHH
T ss_pred H-H-----HHHHHHHHHHHHHh
Confidence 3 3 57899999999875
No 20
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=98.57 E-value=4.9e-08 Score=78.23 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=53.0
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
+.+|.|| -++||+|||+.|.|+|+|+++|||+|.|...+. ...+-.|.|++. ++
T Consensus 12 ~~~i~Ip------~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~------------------~~~er~V~I~G~-~e- 65 (106)
T 2hh3_A 12 GIDVPVP------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD- 65 (106)
T ss_dssp CEEEEEE------TTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS------------------SSSEEEEEEESS-HH-
T ss_pred EEEEEEC------HHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC------------------CCceeEEEEEeC-HH-
Confidence 4568888 578999999999999999999999999974210 112347888764 33
Q ss_pred hHHHHHHHHHHHHHHccC
Q 023341 216 IVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|++++.
T Consensus 66 ----~v~~A~~~I~~ii~ 79 (106)
T 2hh3_A 66 ----RCEHAARIINDLLQ 79 (106)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHh
Confidence 67899999999875
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=98.56 E-value=4.6e-08 Score=72.91 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=53.8
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+.++.|| -+.+|.|||++|.++|+|+++|||+|.|-..|+ .+=.|.|++. ++
T Consensus 5 ~~~~i~ip------~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~--------------------~er~v~I~G~-~~ 57 (73)
T 2axy_A 5 LTIRLLMH------GKEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP-TN 57 (73)
T ss_dssp EEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCC--------------------SEEEEEEEEC-HH
T ss_pred EEEEEEEC------hhHeeeEECCCCHHHHHHHHHHCCEEEEecCCC--------------------CcEEEEEEeC-HH
Confidence 45678888 588999999999999999999999999976431 0125788876 43
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+.+|+++|..+|.
T Consensus 58 -----~v~~A~~~I~~~l~ 71 (73)
T 2axy_A 58 -----AIFKAFAMIIDKLE 71 (73)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889999998875
No 22
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.56 E-value=6.7e-08 Score=75.40 Aligned_cols=67 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
....|.|| ..++|.||||+|.|+|+|+++|||+|.|-..++ +.=.|.|++. ++
T Consensus 17 ~t~~i~Ip------~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~--------------------~~~~V~I~G~-~e 69 (94)
T 2cte_A 17 ASATVAIP------KEHHRFVIGKNGEKLQDLELKTATKIQIPRPDD--------------------PSNQIKITGT-KE 69 (94)
T ss_dssp EEEEEECC------TTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTS--------------------SCCEEEEEEC-HH
T ss_pred eEEEEEEC------hHHeeeeECCCChhHHHHHHHHCCEEEeCCCCC--------------------CCCeEEEEEC-HH
Confidence 35678898 467899999999999999999999999964321 1127889886 43
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|.++|+.++.
T Consensus 70 -----~v~~A~~~I~~i~~ 83 (94)
T 2cte_A 70 -----GIEKARHEVLLISA 83 (94)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhh
Confidence 67889999988864
No 23
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=98.54 E-value=6.6e-08 Score=74.54 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=53.7
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
+.+.+|.|| -+++|+|||++|.|+|+|+++|||+|.|...- + ...+=.|.|++. +
T Consensus 13 ~~~~~i~Ip------~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~--------------~----~~~~~~v~I~G~-~ 67 (89)
T 1j5k_A 13 IITTQVTIP------KDLAGSIIGKGGQRIKQIRHESGASIKIDEPL--------------E----GSEDRIITITGT-Q 67 (89)
T ss_dssp EEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHTCCEEEECSCC--------------S----SSSEEEEEEEEE-H
T ss_pred eEEEEEEEC------hhhcceeECCCCHhHHHHHHHhCCeEEecCCC--------------C----CCCccEEEEEcC-H
Confidence 445678898 57999999999999999999999999996420 0 011236788875 4
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
+ .+++|+++|+.++.
T Consensus 68 e-----~v~~A~~~I~~~i~ 82 (89)
T 1j5k_A 68 D-----QIQNAQYLLQNSVK 82 (89)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 67889999998875
No 24
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.44 E-value=2.1e-07 Score=73.02 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=51.6
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
+..+.|| ..++|+||||+|.|+|+|+++|||+|.|-..|+.. +=.|.|++. ++
T Consensus 18 t~~i~Ip------~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~-------------------~~~V~I~G~-~e- 70 (95)
T 2ctm_A 18 SEDVPLD------HRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPD-------------------PNCVTVTGL-PE- 70 (95)
T ss_dssp CEEEECC------TTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSC-------------------TTEEEEESC-HH-
T ss_pred EEEEEEC------HHHccccCCCCcchHHHHHHHHCCeEEecCCCCCC-------------------CcEEEEEcC-HH-
Confidence 3567888 57789999999999999999999999997654311 226888875 33
Q ss_pred hHHHHHHHHHHHHHHccC
Q 023341 216 IVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|++.|+.|+.
T Consensus 71 ----~v~~A~~~I~~i~~ 84 (95)
T 2ctm_A 71 ----NVEEAIDHILNLEE 84 (95)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 57788888888754
No 25
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.42 E-value=3.6e-07 Score=71.82 Aligned_cols=69 Identities=12% Similarity=0.220 Sum_probs=52.2
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
...+.|| -.++|+||||+|.|+|+|+++|||+|.|--.|... ...-.|.|++. .+
T Consensus 18 ~~~i~Ip------~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~-----------------~~~~~V~I~G~-~e- 72 (97)
T 2ctl_A 18 KLSVTVD------PKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGN-----------------QPQDQITITGY-EK- 72 (97)
T ss_dssp EEEEECC------TTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCS-----------------SCSSEEEEESC-HH-
T ss_pred eEEEEEC------HHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCC-----------------CCccEEEEEeC-HH-
Confidence 4567888 57899999999999999999999999997554210 01226888875 33
Q ss_pred hHHHHHHHHHHHHHHccC
Q 023341 216 IVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~ 233 (283)
.+.+|.++|+.++.
T Consensus 73 ----~v~~A~~~I~~iv~ 86 (97)
T 2ctl_A 73 ----NTEAARDAILRIVG 86 (97)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 56788888888764
No 26
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.28 E-value=7.3e-07 Score=74.47 Aligned_cols=72 Identities=22% Similarity=0.343 Sum_probs=56.2
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
....++.|| -+++|+|||++|.++|+|+++|||+|.|-..|. | ..++.-.|.|++ ++
T Consensus 84 ~~~~~i~vp------~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~-------------~---~~~~~~~v~I~G-~~ 140 (163)
T 3krm_A 84 KLETHIRVP------ASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQT-------------P---DENDQVIVKIIG-HF 140 (163)
T ss_dssp CEEEEEEEE------TTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCC-------------C---CTTSEEEEEEEE-CH
T ss_pred ceEEEEEcC------hhheeeEEcCCChHHHHHHHHhCCeEEECCCCC-------------C---CCCCceEEEEEe-CH
Confidence 345578888 589999999999999999999999999976442 1 123334688888 44
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
+ .+++|.++|+.++.
T Consensus 141 ~-----~v~~A~~~I~~~i~ 155 (163)
T 3krm_A 141 Y-----ASQMAQRKIRDILA 155 (163)
T ss_dssp H-----HHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 3 57899999999986
No 27
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.22 E-value=1.8e-06 Score=73.07 Aligned_cols=70 Identities=19% Similarity=0.365 Sum_probs=52.1
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
+.++.|| -+++|+|||++|.|+|+|+++|||+|.|-...... . ...+=.|.|++ +++
T Consensus 105 ~~~i~vp------~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~--------------~-~~~~~~v~I~G-~~~- 161 (174)
T 1j4w_A 105 EFNFIVP------TGKTGLIIGKGGETIKSISQQSGARIELQRNPPPN--------------A-DPNMKLFTIRG-TPQ- 161 (174)
T ss_dssp EEEEEEE------TTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTT--------------S-CTTEEEEEEEC-CHH-
T ss_pred EEEEEEC------hHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCC--------------C-CCCceEEEEEC-CHH-
Confidence 5578888 47899999999999999999999999998642100 0 01122577777 433
Q ss_pred hHHHHHHHHHHHHHHcc
Q 023341 216 IVDIRLRQAQEIIEELL 232 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL 232 (283)
.+++|.++|+++|
T Consensus 162 ----~v~~A~~~I~~~i 174 (174)
T 1j4w_A 162 ----QIDYARQLIEEKI 174 (174)
T ss_dssp ----HHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHHHhC
Confidence 6789999998875
No 28
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.15 E-value=4.6e-06 Score=69.27 Aligned_cols=72 Identities=22% Similarity=0.402 Sum_probs=53.9
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
+.++.|| -+++|.|||++|.|+|+|+++|||+|.|--.+... ...+-.|.|++ +++
T Consensus 3 ~~~~~Vp------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~----------------~~~~r~v~I~G-~~~- 58 (164)
T 2jvz_A 3 VQEIMIP------AGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN----------------TNVDKPLRIIG-DPY- 58 (164)
T ss_dssp EEEEEEC------TTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS----------------SSSCEEEEEEE-CHH-
T ss_pred EEEEEec------hhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC----------------CCCceEEEEEc-CHH-
Confidence 4678888 46799999999999999999999999995332100 11233677887 333
Q ss_pred hHHHHHHHHHHHHHHccCCC
Q 023341 216 IVDIRLRQAQEIIEELLKPV 235 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~p~ 235 (283)
.+.+|.+.|..++...
T Consensus 59 ----~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 59 ----KVQQACEMVMDILRER 74 (164)
T ss_dssp ----HHHHHHHHHHHHTTCS
T ss_pred ----HHHHHHHHHHHHHHhc
Confidence 6789999999988743
No 29
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.09 E-value=1.9e-06 Score=71.65 Aligned_cols=67 Identities=24% Similarity=0.462 Sum_probs=51.0
Q ss_pred EEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhh
Q 023341 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANI 216 (283)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~ 216 (283)
.++.|| -+++|+|||++|.|+|+|+++|||+|.|-.... ...+=.|.|++. ++
T Consensus 93 ~~i~vp------~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~------------------~~~~~~v~I~G~-~~-- 145 (164)
T 2jvz_A 93 IDVPVP------RHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG------------------TGPEKIAHIMGP-PD-- 145 (164)
T ss_dssp BCCEEE------TTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT------------------TSSEEEEEEESC-HH--
T ss_pred EEEEEC------hhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC------------------CCCcEEEEEEcC-HH--
Confidence 346677 579999999999999999999999999975321 011236777774 33
Q ss_pred HHHHHHHHHHHHHHccC
Q 023341 217 VDIRLRQAQEIIEELLK 233 (283)
Q Consensus 217 ~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|.++|+.++.
T Consensus 146 ---~v~~A~~~I~~~i~ 159 (164)
T 2jvz_A 146 ---RCEHAARIINDLLQ 159 (164)
T ss_dssp ---HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh
Confidence 67899999998875
No 30
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.09 E-value=1.9e-06 Score=67.66 Aligned_cols=65 Identities=17% Similarity=0.328 Sum_probs=51.0
Q ss_pred EEEecCCCCCCCCccccceeCCCchhHHHHHHhh-CCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eT-gckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
..+.|| ..+++.||||+|.++|+|+++| ||+|.|--.|+.. -.|.|.+.+
T Consensus 19 ~~i~Ip------~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~--------------------~~V~I~G~~--- 69 (95)
T 2ctj_A 19 VEVSIP------AKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGS--------------------DTVVIRGPS--- 69 (95)
T ss_dssp EEEECC------HHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTC--------------------CEEEEESCH---
T ss_pred EEEEEC------HHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCc--------------------ceEEEEcCH---
Confidence 456788 5788999999999999999999 9999997555311 167787743
Q ss_pred hHHHHHHHHHHHHHHccC
Q 023341 216 IVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~ 233 (283)
..+++|+++|+.|+.
T Consensus 70 ---~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 70 ---SDVEKAKKQLLHLAE 84 (95)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHh
Confidence 267899999998864
No 31
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.05 E-value=2.7e-06 Score=70.82 Aligned_cols=70 Identities=26% Similarity=0.433 Sum_probs=53.1
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
...++.|| -+++|+|||++|.++|+|+++|||+|.|.+... |+ ..+=.|.|++ +++
T Consensus 89 ~~~~i~vp------~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~-------------~~----~~~~~v~I~G-~~~ 144 (160)
T 2jzx_A 89 VTLRLVVP------ASQCGSLIGKGGCKIKEIRESTGAQVQVAGDML-------------PN----STERAITIAG-IPQ 144 (160)
T ss_dssp EEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCS-------------TT----CCEEEEEEEE-CHH
T ss_pred EEEEEEEC------hhheeeEECCCCHHHHHHHHHhCCeEEECCCCC-------------CC----CCceEEEEEc-CHH
Confidence 45678888 589999999999999999999999999975210 10 1223678888 443
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|.+++.
T Consensus 145 -----~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 145 -----SIIECVKQICVVML 158 (160)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh
Confidence 57889999888763
No 32
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.01 E-value=4.3e-06 Score=69.52 Aligned_cols=68 Identities=24% Similarity=0.352 Sum_probs=51.1
Q ss_pred eeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 023341 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 212 (283)
Q Consensus 133 vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~ 212 (283)
+..+.++.|| -.++|.|||++|.++|+|+++|||+|.|-..|+ .+-.|.|++.
T Consensus 3 ~~~~~~~~vp------~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--------------------~~r~v~I~G~- 55 (160)
T 2jzx_A 3 VTLTIRLLMH------GKEVGSIIGKKGESVKKMREESGARINISEGNC--------------------PERIITLAGP- 55 (160)
T ss_dssp CEEEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTT--------------------TEEEEEEEEE-
T ss_pred ccEEEEEEEc------hhheeeeECCCcHHHHHHHHHHCCEEEEcCCCC--------------------CceEEEEEeC-
Confidence 3456788999 578999999999999999999999999985431 1126777775
Q ss_pred chhhHHHHHHHHHHHHHHcc
Q 023341 213 PANIVDIRLRQAQEIIEELL 232 (283)
Q Consensus 213 ~~~~~~~rl~~A~e~Ie~LL 232 (283)
++ .+.+|...|.+++
T Consensus 56 ~~-----~v~~A~~~I~~~i 70 (160)
T 2jzx_A 56 TN-----AIFKAFAMIIDKL 70 (160)
T ss_dssp HH-----HHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHHHH
Confidence 22 4667777776554
No 33
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=97.99 E-value=4e-06 Score=70.90 Aligned_cols=68 Identities=28% Similarity=0.497 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN 215 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~ 215 (283)
..++.|| -+++|+|||++|.++|+|+++|||+|.|... +. ...+-.|.|++. ++
T Consensus 4 ~~~~~vp------~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~----~~--------------~~~~r~v~I~G~-~~- 57 (174)
T 1j4w_A 4 MIDVPIP------RFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD----DG--------------TTPERIAQITGP-PD- 57 (174)
T ss_dssp EEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEEECC----TT--------------SCSEEEEEEEEC-HH-
T ss_pred EEEEEEC------hhheeeeecCCchHHHHHHHHhCCEEEEecC----CC--------------CCCccEEEEEeC-HH-
Confidence 4567888 5799999999999999999999999999642 10 011236777775 32
Q ss_pred hHHHHHHHHHHHHHHccC
Q 023341 216 IVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 216 ~~~~rl~~A~e~Ie~LL~ 233 (283)
.+.+|+++|.+++.
T Consensus 58 ----~v~~A~~~I~~~~~ 71 (174)
T 1j4w_A 58 ----RAQHAAEIITDLLR 71 (174)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 57889999988875
No 34
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.97 E-value=3.6e-06 Score=71.32 Aligned_cols=72 Identities=17% Similarity=0.246 Sum_probs=53.5
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
.+.++.|| .+++|+|||++|.++|+|+++|||+|.|-..... + ...+=.|.|++..
T Consensus 104 ~~~~i~Vp------~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~------------~----~~~~~~v~I~G~~-- 159 (178)
T 2anr_A 104 NQVKIIVP------NSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG------------I----NLQNRVVTVSGEP-- 159 (178)
T ss_dssp GEEEEEEE------HHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC--------------------CCEEEEEEESSH--
T ss_pred eEEEEEEc------hhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC------------C----CCCceEEEEEcCH--
Confidence 35678898 6899999999999999999999999999754210 0 0112256776642
Q ss_pred hhHHHHHHHHHHHHHHccCC
Q 023341 215 NIVDIRLRQAQEIIEELLKP 234 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~p 234 (283)
..+++|+++|..+|.-
T Consensus 160 ----~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 160 ----EQNRKAVELIIQKIQE 175 (178)
T ss_dssp ----HHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 2678999999998863
No 35
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=97.92 E-value=9.8e-06 Score=68.61 Aligned_cols=74 Identities=19% Similarity=0.348 Sum_probs=53.1
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
...++.|| -.++|+|||++|.++|+|+++|||+|.|-..+... .+ ..+=.|.|++. ++
T Consensus 6 ~~~~i~vp------~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~--------~~-------~~er~v~I~G~-~~ 63 (178)
T 2anr_A 6 YFLKVLIP------SYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFY--------PG-------TTERVCLIQGT-IE 63 (178)
T ss_dssp EEEEEEEE------HHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBC--------TT-------SSEEEEEEEEC-HH
T ss_pred EEEEEEEC------hhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCC--------CC-------CCCceEEEEeC-HH
Confidence 34578888 57999999999999999999999999996432110 01 01114667764 32
Q ss_pred hhHHHHHHHHHHHHHHccCCC
Q 023341 215 NIVDIRLRQAQEIIEELLKPV 235 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~p~ 235 (283)
.+.+|.++|.+++.-.
T Consensus 64 -----~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 64 -----ALNAVHGFIAEKIREM 79 (178)
T ss_dssp -----HHHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHHHHHhcc
Confidence 5788999999888643
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=97.91 E-value=8.3e-06 Score=64.11 Aligned_cols=64 Identities=13% Similarity=0.255 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCe-EEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCR-VYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgck-I~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
+..+.|| -.++|.+|||+|.|+|+|+++|||+ |.|-- | +=.|.|.+.+.+
T Consensus 16 i~~i~I~------~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----d------------------dG~V~I~g~~~e 66 (91)
T 2cpq_A 16 HEEFVVR------EDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----D------------------TGTFRIYGESAD 66 (91)
T ss_dssp EEEEECC------HHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----T------------------TTEEEEEESSHH
T ss_pred EEEEEEC------hHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----C------------------CCEEEEEECCHH
Confidence 4556787 5789999999999999999999998 99952 1 117899997755
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
.+++|+++|+.+-.
T Consensus 67 -----a~~~A~~~I~~ie~ 80 (91)
T 2cpq_A 67 -----AVKKARGFLEFVED 80 (91)
T ss_dssp -----HHHHHHHHHSCCCC
T ss_pred -----HHHHHHHHHHhhhe
Confidence 67899999987654
No 37
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=97.86 E-value=1.9e-05 Score=65.76 Aligned_cols=38 Identities=21% Similarity=0.461 Sum_probs=34.2
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEecc
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGK 179 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGk 179 (283)
+.++.|| -+++|.|||++|.++|+|+++|||+|.|--.
T Consensus 4 ~~~~~ip------~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~ 41 (163)
T 3krm_A 4 MVQVFIP------AQAVGAIIGKKGQHIKQLSRFASASIKIAPP 41 (163)
T ss_dssp EEEEEEE------GGGHHHHHCGGGHHHHHHHHHHTCEEEECCC
T ss_pred EEEEEec------hhhcceeECCCcHHHHHHHHHHCCeEEEcCC
Confidence 5678888 5789999999999999999999999999754
No 38
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.79 E-value=1.6e-05 Score=80.94 Aligned_cols=68 Identities=21% Similarity=0.395 Sum_probs=54.9
Q ss_pred CcceeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 023341 130 SYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIE 209 (283)
Q Consensus 130 ~~~vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~ 209 (283)
++...++..+.|| -..||.||||+|.|+|.|+++|||+|.|--.| .|.|.
T Consensus 562 ~~~ap~~~~~~I~------~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~G------------------------~V~I~ 611 (630)
T 3u1k_A 562 KENGPVVETVQVP------LSKRAKFVGPGGYNLKKLQAETGVTISQVDEE------------------------TFSVF 611 (630)
T ss_dssp CTTCCEEEEEECC------HHHHHHHHCGGGHHHHHHHHHHCCEEEECSSS------------------------EEEEE
T ss_pred cccCCeEEEEEeC------hhHhheeECCCChhHHHHHHHHCCEEEEcCCc------------------------EEEEE
Confidence 3455567788888 57899999999999999999999999996322 78999
Q ss_pred ecCchhhHHHHHHHHHHHHHHcc
Q 023341 210 ADLPANIVDIRLRQAQEIIEELL 232 (283)
Q Consensus 210 a~~~~~~~~~rl~~A~e~Ie~LL 232 (283)
+.+.+ .+++|++.|+.|+
T Consensus 612 ~~~~~-----~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 612 APTPS-----AMHEARDFITEIC 629 (630)
T ss_dssp ESSHH-----HHHHHHHHTTC--
T ss_pred eCCHH-----HHHHHHHHHHHHh
Confidence 97754 6789999998875
No 39
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.75 E-value=3.5e-05 Score=67.76 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=43.4
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
..+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+ +++ .++.|...|+
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~~-------------------------~v~i~G-~~~-----~i~~Ar~~i~ 155 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGEY-------------------------EVAIIG-DYE-----RAMAAKQAIE 155 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECSS-------------------------EEEEEE-EHH-----HHHHHHHHHH
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcCC-------------------------EEEEEe-ChH-----HHHHHHHHHH
Confidence 368999999999999999999999999763 344544 232 5688999999
Q ss_pred HccCC
Q 023341 230 ELLKP 234 (283)
Q Consensus 230 ~LL~p 234 (283)
+|+.-
T Consensus 156 ~li~g 160 (191)
T 1tua_A 156 MLAEG 160 (191)
T ss_dssp HHHTT
T ss_pred HHHcC
Confidence 99864
No 40
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.60 E-value=5.1e-05 Score=67.86 Aligned_cols=53 Identities=28% Similarity=0.546 Sum_probs=44.0
Q ss_pred cccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHHH
Q 023341 151 FVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEE 230 (283)
Q Consensus 151 fvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~ 230 (283)
.+|||||+.|.|+|.||..|||+|.|-|+ .|.|.+. ++ .++.|...|++
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~~-------------------------~v~i~G~-~~-----~i~~A~~~i~~ 187 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYGK-------------------------TVAIIGN-PI-----QIEIAKTAIEK 187 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEETT-------------------------EEEEEEC-HH-----HHHHHHHHHHH
T ss_pred hhheeECCCchHHHHHHHHhCceEEECCe-------------------------EEEEEeC-HH-----HHHHHHHHHHH
Confidence 58999999999999999999999999652 3666663 33 57889999999
Q ss_pred ccCC
Q 023341 231 LLKP 234 (283)
Q Consensus 231 LL~p 234 (283)
|+.-
T Consensus 188 li~g 191 (219)
T 2e3u_A 188 LARG 191 (219)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 9964
No 41
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.18 E-value=0.00033 Score=62.64 Aligned_cols=71 Identities=18% Similarity=0.307 Sum_probs=52.2
Q ss_pred eeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecC
Q 023341 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADL 212 (283)
Q Consensus 133 vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~ 212 (283)
..++.++.|| -+.+|.||||.|.|+|.|+++|||+|.|--. + =.|.|.+.+
T Consensus 32 aP~i~~i~IP------~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----~-------------------g~V~I~~~~ 82 (219)
T 2e3u_A 32 FKQEEYVKIP------KDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----T-------------------GEVWITSTK 82 (219)
T ss_dssp -CCEEEEECC------HHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----T-------------------CEEEEEECT
T ss_pred CCEEEEEEeC------HHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----C-------------------CEEEEecCC
Confidence 3346678899 5788999999999999999999999999521 1 146676644
Q ss_pred chhhHHHHHHHHHHHHHHccC
Q 023341 213 PANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 213 ~~~~~~~rl~~A~e~Ie~LL~ 233 (283)
...- -..+.+|.++|+.+..
T Consensus 83 ~t~d-~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 83 ETED-PLAVWKARDIVLAIGR 102 (219)
T ss_dssp TCCS-HHHHHHHHHHHHHHHT
T ss_pred CCCC-HHHHHHHHHHHHHHhc
Confidence 1000 1268899999999884
No 42
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=96.87 E-value=0.0014 Score=54.50 Aligned_cols=71 Identities=18% Similarity=0.387 Sum_probs=50.7
Q ss_pred EEEecCCCCCCCCccccceeCCCchhHHHHHHhhCC-eEEEeccCCCCCCCcccccCCCCCCCCCCCCc-eEEEEecCch
Q 023341 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGC-RVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPL-HILIEADLPA 214 (283)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgc-kI~IRGkGS~kd~~kee~lrg~p~~ehl~epL-HVlI~a~~~~ 214 (283)
..|.|| =+.+|++||-+|.|+|.+++.||| +|.|.+..... .+ .++.+ -|.|.+.-
T Consensus 69 ~~v~Vp------~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~----------~~----~~~~~~~vtI~G~~-- 126 (144)
T 2qnd_A 69 DVIQVP------RNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKN----------VP----QEEGMVPFVFVGTK-- 126 (144)
T ss_dssp EEEEEE------GGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTC----------CC----CCTTEEEEEEEEEH--
T ss_pred EEEEEC------HHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCC----------cc----ccCCeeEEEEEeCH--
Confidence 567777 478899999999999999999998 99998753210 00 12222 25566642
Q ss_pred hhHHHHHHHHHHHHHHccC
Q 023341 215 NIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 215 ~~~~~rl~~A~e~Ie~LL~ 233 (283)
..++.|.++|+..|.
T Consensus 127 ----~~v~~Ak~li~~~l~ 141 (144)
T 2qnd_A 127 ----DSIANATVLLDYHLN 141 (144)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHH
Confidence 267889999998774
No 43
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.73 E-value=0.00034 Score=72.29 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=11.9
Q ss_pred ceeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023341 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 211 (283)
Q Consensus 132 ~vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~ 211 (283)
...++..+-|| -..||.+|||+|.|+|.|+++||++|.|--.| .|.|.+.
T Consensus 567 ~ap~~~~~~i~------~~ki~~vig~gg~~i~~i~~~tg~~idi~ddG------------------------~v~I~~~ 616 (726)
T 4aid_A 567 FAPKIETINIP------TDKIREVIGSGGKVIREIVATTGAKVDINDDG------------------------VVKVSAS 616 (726)
T ss_dssp SCCC-------------------------------------------------------------------------CCS
T ss_pred cCCeEEEEeCC------HHHHHhhcCCCchhHHHHHHHHCCceeEECCc------------------------eEEEEeC
Confidence 34445667777 46789999999999999999999999887433 4567666
Q ss_pred CchhhHHHHHHHHHHHHHHccCCC
Q 023341 212 LPANIVDIRLRQAQEIIEELLKPV 235 (283)
Q Consensus 212 ~~~~~~~~rl~~A~e~Ie~LL~p~ 235 (283)
+.+ .+++|++.|+.++...
T Consensus 617 ~~~-----~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 617 DGA-----KIKAAIDWIKSITDEA 635 (726)
T ss_dssp CHH-----HHHHHHHC--------
T ss_pred CHH-----HHHHHHHHHHHHhhhh
Confidence 543 6788899999887643
No 44
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=96.28 E-value=0.0088 Score=47.17 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=46.2
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHh-hCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEAT-TGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~e-TgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
.+.+|.|| -.|-+.|||++|.|+|+|+++ ++|+|.+=. + ++ -|.|++.
T Consensus 27 ~t~~i~vp------~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~-----------------~~-~ItI~G~-- 75 (102)
T 2ctf_A 27 TVSSVAAP------SWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----G-----------------ED-KITLEGP-- 75 (102)
T ss_dssp EEEEEECC------STTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----S-----------------SC-EEEEEEC--
T ss_pred EEEEEEeC------HHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----C-----------------CC-EEEEECC--
Confidence 45678899 456689999999999999996 688886653 0 01 4667664
Q ss_pred hhhHHHHHHHHHHHHHHccC
Q 023341 214 ANIVDIRLRQAQEIIEELLK 233 (283)
Q Consensus 214 ~~~~~~rl~~A~e~Ie~LL~ 233 (283)
. ..+.+|.+.|+.++.
T Consensus 76 ~----~~V~~a~~~I~~~v~ 91 (102)
T 2ctf_A 76 T----EDVSVAQEQIEGMVK 91 (102)
T ss_dssp H----HHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHH
Confidence 3 256778888877764
No 45
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=96.02 E-value=0.013 Score=56.40 Aligned_cols=73 Identities=10% Similarity=0.127 Sum_probs=52.3
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCc--hhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEec
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEAD 211 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG--~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~ 211 (283)
+.+.++.|| ..|.+.|||.+| +++++|.++|||+|.+=..++-+.. +. ...=-|.|++.
T Consensus 29 ~VTl~v~Ip------~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~-------~~------~ks~~VtItG~ 89 (376)
T 3n89_A 29 RVTLNMEFE------SQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTT-------PD------PFAQQVTITGY 89 (376)
T ss_dssp EEEEEEECC------GGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSS-------CC------TTTTEEEEEEE
T ss_pred EEEEEEEEc------hhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccC-------Cc------CCCCeEEEEcC
Confidence 556778888 788899999999 9999999999999999654311100 00 00114778775
Q ss_pred CchhhHHHHHHHHHHHHHHc
Q 023341 212 LPANIVDIRLRQAQEIIEEL 231 (283)
Q Consensus 212 ~~~~~~~~rl~~A~e~Ie~L 231 (283)
- +.+++|.+.|..+
T Consensus 90 ~------enVE~AR~~I~~l 103 (376)
T 3n89_A 90 F------GDVDRARMLMRRN 103 (376)
T ss_dssp H------HHHHHHHHHHHHS
T ss_pred H------HHHHHHHHHHHhc
Confidence 2 3678899999886
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=94.60 E-value=0.035 Score=45.89 Aligned_cols=30 Identities=13% Similarity=0.368 Sum_probs=27.1
Q ss_pred EEEEecCCCCCCCCccccceeCCCchhHHHHHHhhC
Q 023341 136 ILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTG 171 (283)
Q Consensus 136 ~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTg 171 (283)
++++.|| -.++|.+||++|.++|+|++++|
T Consensus 5 ~~~~~Vp------~~~vG~~IG~~G~~I~~i~~e~g 34 (144)
T 2qnd_A 5 HEQFIVR------EDLMGLAIGTHGANIQQARKVPG 34 (144)
T ss_dssp EEEEECC------GGGHHHHHCGGGHHHHHHHTSTT
T ss_pred EEEEEEC------CcceeeEECCChhHHHHHHHHHC
Confidence 4677888 57899999999999999999999
No 47
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=94.09 E-value=0.009 Score=61.71 Aligned_cols=43 Identities=21% Similarity=0.424 Sum_probs=0.0
Q ss_pred eeeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccCC
Q 023341 133 VKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGS 181 (283)
Q Consensus 133 vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkGS 181 (283)
..++..+-|| ...+|.+|||+|.|++.|.++||++|-|.+.|.
T Consensus 558 ap~~~~~~i~------~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~dg~ 600 (723)
T 3cdi_A 558 APRIHTIKIN------PDKIKDVIGKGGSVIRALTEETGTTIEIEDDGT 600 (723)
T ss_dssp -------------------------------------------------
T ss_pred CceEEEEEEC------HHHhcccccccceeeeeeehhhCceEEecCCcc
Confidence 3445556676 356789999999999999999999999987653
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=93.20 E-value=0.098 Score=45.74 Aligned_cols=36 Identities=19% Similarity=0.426 Sum_probs=32.2
Q ss_pred EEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEec
Q 023341 137 LRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRG 178 (283)
Q Consensus 137 ~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRG 178 (283)
.++.|| -+-+|.|+|-.|.|.|.|++.+||+|.|-.
T Consensus 6 ~~i~VP------~~rvg~liGk~g~~~k~i~e~~g~~i~id~ 41 (191)
T 1tua_A 6 IYVKVK------PERLGAVIGPRGEVKAEIMRRTGTVITVDT 41 (191)
T ss_dssp EEEECC------GGGHHHHHCGGGHHHHHHHHHHTEEEEEET
T ss_pred eEEECC------HHHhhHHHhcCHhHHHHHHHHHCcEEEEEc
Confidence 467888 477899999999999999999999999964
No 49
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=92.07 E-value=0.0067 Score=62.98 Aligned_cols=41 Identities=29% Similarity=0.733 Sum_probs=13.7
Q ss_pred eeEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEeccC
Q 023341 134 KRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKG 180 (283)
Q Consensus 134 k~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IRGkG 180 (283)
.++..+-||. ..+|.+|||+|.++|.|+++||++|.|-+.|
T Consensus 597 p~~~~~~I~~------~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~dG 637 (757)
T 1e3p_A 597 PRIITVKIPV------DKIGEVIGPKRQMINQIQEDTGAEITIEDDG 637 (757)
T ss_dssp CBCCCC------------------------CTTCCCCCSCC------
T ss_pred ceeEEEEECh------HHeehcccccceeeehhhHhhCCEEEecCCc
Confidence 3444566774 5568999999999999999999999887544
No 50
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=90.75 E-value=0.078 Score=44.54 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=27.9
Q ss_pred CccccceeCCCchhHHHHHHhhCCeEEEe
Q 023341 149 FNFVGRLLGPRGNSLKRVEATTGCRVYIR 177 (283)
Q Consensus 149 ~NfvGrILGPrG~TlK~le~eTgckI~IR 177 (283)
-..+|.||||.|+.++.||..|++.|.|.
T Consensus 64 ~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~ 92 (140)
T 3v69_A 64 PRLLEIMFGKDGEHIPHLESMLHTLIHVN 92 (140)
T ss_dssp GGGHHHHHCGGGTTHHHHHHHHTSEEEEE
T ss_pred hhhhhcccCCCcCccchHHhhcceeEEEe
Confidence 58899999999999999999999999997
No 51
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=84.66 E-value=1.1 Score=43.00 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred ccccceeCCCc--hhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRG--NSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEI 227 (283)
Q Consensus 150 NfvGrILGPrG--~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~ 227 (283)
-++..|||-+| .++++|.++|||+|..=..|+..+. ....-.|.|++ .. ..+.+|.+.
T Consensus 195 ~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~--------------~~~~~~ItItG--s~----e~V~~Ark~ 254 (376)
T 3n89_A 195 YYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNET--------------RGNIYEIKVVG--NI----DNVLKARRY 254 (376)
T ss_dssp GGHHHHTCCTTSCCHHHHHHHHHTCEEECC-----------------------CCEEEEEEES--CH----HHHHHHHHH
T ss_pred HHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccc--------------cCCceEEEEEe--CH----HHHHHHHHH
Confidence 45788999999 5669999999999998665432211 00112566665 33 367899999
Q ss_pred HHHcc
Q 023341 228 IEELL 232 (283)
Q Consensus 228 Ie~LL 232 (283)
|..+|
T Consensus 255 I~~lL 259 (376)
T 3n89_A 255 IMDLL 259 (376)
T ss_dssp HHHTS
T ss_pred HHhhC
Confidence 99987
No 52
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=81.53 E-value=0.14 Score=42.18 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=39.6
Q ss_pred hhHHhhhccCCCCCCCCcccccCCCCCCC-CccccccCcCCCCCCCCCCCcccccCCCC-CCCCCCCCCCCC
Q 023341 58 QEIFRVSGMMPNQGFGDFDRLRHRSPSPM-ASSNLMSNVAGTGLGGWNGLPQERLGGPP-GMTMDWQSAPAS 127 (283)
Q Consensus 58 ~EI~RV~~~~~~~~~~d~~~~~~~SP~p~-~~~g~~~N~~~~~~~~~~~l~~Er~~~~~-~~~~~~~~~p~~ 127 (283)
+||.+..... ..++.+.+..+++||.|. ...|.+.||++ ++.+..|..||+.+++ .+..+..+.|++
T Consensus 51 eeIt~kL~~g-~l~i~~~~~~RSPSPpP~Yd~~G~R~NTRE--~R~r~~LE~ER~~lIe~~~k~~P~fkpP~ 119 (124)
T 4fxw_B 51 EDLTRKLRTG-DLGIPPNPEDRSPSPEPIYNSEGKRLNTRE--FRTRKKLEEERHNLITEMVALNPDFKPPA 119 (124)
T ss_dssp HHHHHHHHHC-CCCCCSSTTSSCCCCCCCBCTTSCBSSCHH--HHHHHHHHHHHHHHHHHGGGTCSSCCCCC
T ss_pred HHHHHHHhcC-CcCCCCCcccCCCCCCCccCccccccchHH--HHHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence 5666554321 112222333555555544 34788999984 6667888889998764 456666665543
No 53
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=78.72 E-value=9 Score=33.79 Aligned_cols=69 Identities=23% Similarity=0.310 Sum_probs=51.5
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
+.+.|++||+|.-+..|.+.++|+|.| |. . | .|+|.+.++... ..+..|+..||
T Consensus 157 ~~~~rl~~~~~~~l~~l~~~~~~~i~v-G~----N--------G-----------~IWi~~~~~~~~--~~~~~ai~~~e 210 (235)
T 2z0s_A 157 AKVPRVIGRKMSMLKTLEEKTECKIFV-AR----N--------G-----------RIHLECPNEDLE--AIAVMAIKIID 210 (235)
T ss_dssp GGSGGGTCGGGHHHHHHHHHHCCEEEE-ET----T--------T-----------EEEEECSCHHHH--HHHHHHHHHHH
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-eC----C--------C-----------EEEEecCCHHHH--HHHHHHHHHHH
Confidence 688899999999999999999999988 43 1 1 789998776543 36778888887
Q ss_pred HccCCCCCchHHHHHH
Q 023341 230 ELLKPVDESQDYIKRQ 245 (283)
Q Consensus 230 ~LL~p~~e~~D~~K~~ 245 (283)
.--. +.+-.|.+|+-
T Consensus 211 ~~~~-~~~l~~~v~~~ 225 (235)
T 2z0s_A 211 EEAY-TSGLTKRIIKF 225 (235)
T ss_dssp HCSC-CTTCHHHHHHH
T ss_pred hhhh-hhhHHHHHHHH
Confidence 7554 44555656543
No 54
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=70.29 E-value=1.6 Score=36.44 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=26.5
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEec
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRG 178 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRG 178 (283)
+-+|..+|++|..+|.|++++|-||-|-.
T Consensus 45 g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 45 GEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 44999999999999999999999998775
No 55
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.40 E-value=31 Score=30.33 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=49.1
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
+.+.|++|++|.-++.|.+.++|.|.| |. .| .|+|.+.+. -...+..|+..||
T Consensus 145 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~------------NG-----------~IWi~~~~~---~~~~~~~ai~~~e 197 (229)
T 2ba0_A 145 ARVPRVIGKKGSMIKLLKSELDVQIVV-GQ------------NG-----------LIWVNGDRR---KVSIAEEAIYLIE 197 (229)
T ss_dssp GGHHHHHCGGGHHHHHHHHHHTCEEEE-CT------------TS-----------EEEEESCHH---HHHHHHHHHHHHH
T ss_pred HHhHHHhcCCchHHHHhcccCCeEEEE-EC------------Cc-----------EEEEeCCch---hHHHHHHHHHHHH
Confidence 677799999999999999999999988 42 11 788986432 2346677888887
Q ss_pred HccCCCCCchHHHHHHHHHHHH
Q 023341 230 ELLKPVDESQDYIKRQQLRELA 251 (283)
Q Consensus 230 ~LL~p~~e~~D~~K~~QL~ELA 251 (283)
.--. ..+-.|.+| +-|++.-
T Consensus 198 ~~~~-~~~l~~~v~-~~l~~~~ 217 (229)
T 2ba0_A 198 QEAH-TEGLTDRVA-EFIKRRK 217 (229)
T ss_dssp HCSC-CSSHHHHHH-HHHHHHH
T ss_pred hhhh-hhhHHHHHH-HHHHHhc
Confidence 6443 233344444 3355543
No 56
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=48.76 E-value=2.7 Score=37.84 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=35.8
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
+.+.|++||+|.-+..|.+.++|.|.| |. .| .|+|.+.++... ..+..|+..||
T Consensus 164 ~~v~rl~~~~~~~l~~l~~~~~~ei~v-G~------------NG-----------~IWi~~~~~~~~--~~~~~aI~~~e 217 (251)
T 2je6_I 164 VKVPRVIGKNKSMYETLTSKSGCSIFV-AN------------NG-----------RIWATCPSRFSE--EILIEAIRKIE 217 (251)
T ss_dssp GGHHHHHCGGGHHHHHHHTTC---CEE-CT------------TS-----------EEEC-----CTT--CCTHHHHTTTT
T ss_pred HHhHHHhcCcchHHHHhcccCCeEEEE-EC------------Cc-----------EEEEeCCCHHHH--HHHHHHHHHHH
Confidence 577899999999999999999999988 42 11 788888776432 14556666665
Q ss_pred HccCCCCCchHHHHH
Q 023341 230 ELLKPVDESQDYIKR 244 (283)
Q Consensus 230 ~LL~p~~e~~D~~K~ 244 (283)
.--. +.+-.|.+|+
T Consensus 218 ~~~~-~~~l~~~v~~ 231 (251)
T 2je6_I 218 NESH-IKGLTDRIKQ 231 (251)
T ss_dssp TTTT-CC--------
T ss_pred hhhh-hhhHHHHHHH
Confidence 5432 2333344543
No 57
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=45.32 E-value=7.8 Score=35.23 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=30.8
Q ss_pred CCCCCccccceeCCCchhHHHH-HHhhCCeEEEec
Q 023341 145 TYPNFNFVGRLLGPRGNSLKRV-EATTGCRVYIRG 178 (283)
Q Consensus 145 ~~P~~NfvGrILGPrG~TlK~l-e~eTgckI~IRG 178 (283)
.-|+++-||..+|++|+.++.| ++..|=||-|--
T Consensus 121 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 155 (251)
T 2asb_A 121 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 155 (251)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEE
Confidence 4578999999999999999999 888899999875
No 58
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=41.50 E-value=44 Score=30.98 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=33.2
Q ss_pred HHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 164 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 164 K~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
.++-+.-|+++.+.||...|.+.|= | ||.+.+++.+ .+..++..+.+.++
T Consensus 350 ~~~~~~p~~~~~~ygk~~~~~~rkm----G-----------hv~~~~~~~~-~~~~~a~~~~~~~~ 399 (403)
T 3k5i_A 350 ECALSIPNASIHLYSKGAAKPGRKM----G-----------HITVTAPTMH-EAETHIQPLIDVVD 399 (403)
T ss_dssp HHHTTSTTEEEEECCCCSCCTTCEE----E-----------EEEEECSSHH-HHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEECCCCCCCCCCee----E-----------EEEEEcCCHH-HHHHHHHHHHhhhh
Confidence 4445567899999998665554332 2 9999987754 45556666666655
No 59
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=39.93 E-value=11 Score=36.06 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCCCCccccceeCCCchhHHHHHHhh-CCeEEEec
Q 023341 145 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 178 (283)
Q Consensus 145 ~~P~~NfvGrILGPrG~TlK~le~eT-gckI~IRG 178 (283)
.-|+++-||..+|++|+.++.|.++. |=||-|--
T Consensus 244 ~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~ 278 (366)
T 1k0r_A 244 NVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIID 278 (366)
T ss_dssp SSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEE
Confidence 46889999999999999999999999 99999886
No 60
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=33.62 E-value=12 Score=31.46 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=18.4
Q ss_pred ccceeCCCchhHHHHHHhhC
Q 023341 152 VGRLLGPRGNSLKRVEATTG 171 (283)
Q Consensus 152 vGrILGPrG~TlK~le~eTg 171 (283)
.|.|||-+|.|++.||--+.
T Consensus 44 ~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 44 SALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp GTTTTCGGGHHHHHHHHHHH
T ss_pred cceEECCCCcchHHHHHHHH
Confidence 59999999999999999884
No 61
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.44 E-value=21 Score=32.80 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=39.3
Q ss_pred ccccceeCCCchhHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHH
Q 023341 150 NFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIE 229 (283)
Q Consensus 150 NfvGrILGPrG~TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie 229 (283)
+++-|++||++.-++.|.+.++|.|.|==. | .|+|.+.++... ..+..|+..++
T Consensus 219 ~lvrrl~~~~~~~l~~L~~~~~~eI~vG~N-------------G-----------~IWI~~~~~~~~--~~i~~aI~~~e 272 (289)
T 2nn6_G 219 GLIRKLLAPDCEIIQEVGKLYPLEIVFGMN-------------G-----------RIWVKAKTIQQT--LILANILEACE 272 (289)
T ss_dssp HHHHHHHCTTCSHHHHTTCSSSCCCEEETT-------------T-----------EEEECCSSHHHH--HHHHHHHHHTT
T ss_pred HHhhhhhcCchhHHHHhcccCCeEEEEECC-------------c-----------EEEEecCChhHH--HHHHHHHHHhh
Confidence 566778999999999999899999976321 1 789988766432 35666666663
No 62
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=28.57 E-value=20 Score=32.02 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred ceeeEEEEecCCCCCCCCccccceeCCCchhHHHH--------HHhhCCeEEEe
Q 023341 132 TVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRV--------EATTGCRVYIR 177 (283)
Q Consensus 132 ~vk~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~l--------e~eTgckI~IR 177 (283)
.+.....|++.-+.+ .|-|||-+|..+|+| |+..||||.+.
T Consensus 237 ~~~i~a~i~ve~~~~-----k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 237 MLVIKGEIIVDRENL-----KPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp SEEEEEEEEESSGGG-----HHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred eEEEEEEEEEccCCc-----ceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 445556677765543 489999999999976 77889998875
No 63
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae}
Probab=27.03 E-value=84 Score=24.61 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=31.5
Q ss_pred hhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchh--hHHHHHHHHHHHHHHccCC
Q 023341 169 TTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPAN--IVDIRLRQAQEIIEELLKP 234 (283)
Q Consensus 169 eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~--~~~~rl~~A~e~Ie~LL~p 234 (283)
..|.++.|+|+|--... .+ ...+|+|.+.+..|.+ .. ....+++++|+..
T Consensus 47 ~~G~~~rl~G~Gmp~~~--------~~----~~GDL~V~~~V~~P~~~~ls----~~q~~~l~~l~~~ 98 (121)
T 1xao_A 47 APGMRKVIEGKGMPIPK--------YG----GYGNLIIKFTIKFPENHFTS----EENLKKLEEILPP 98 (121)
T ss_dssp CTTCEEEETTCSCC------------------CCCEEEEEEEECCCTTCSC----HHHHHHHHHHSCC
T ss_pred CCCcEEEECCCCCCCCC--------CC----CCCCEEEEEEEECCCCCCCC----HHHHHHHHHHccc
Confidence 46899999999953211 00 2468999999988864 21 2345777777753
No 64
>3u42_A 50S ribosomal protein L1; rossmann fold, rRNA binding, RNA binding; 1.35A {Thermus thermophilus} PDB: 3u56_A 3u4m_A 1eg0_N 1vsp_A 2hgj_C 2hgq_C 2hgu_C 1vsa_A 4f9t_A* 4abs_C 3zvp_C 1zho_A 1ml5_c* 1yl3_C 1giy_C 3umy_A 2hw8_A 2j01_C 2j03_C 2om7_K* ...
Probab=25.97 E-value=53 Score=29.03 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=39.5
Q ss_pred CCCc-cccceeCCCch-------h-----HHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCc
Q 023341 147 PNFN-FVGRLLGPRGN-------S-----LKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLP 213 (283)
Q Consensus 147 P~~N-fvGrILGPrG~-------T-----lK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~ 213 (283)
|.+. .+|+||||||. | .+.+++.-..+|..|-+ -..-+|+-|--.+.
T Consensus 122 ~~vg~~LG~iLGPrGlMPnpk~GTvt~dv~~~v~~~K~g~v~~r~d--------------------k~g~i~~~IGk~~f 181 (229)
T 3u42_A 122 GAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRND--------------------KTGAIHAPVGKASF 181 (229)
T ss_dssp HHHHHHHHHHHHHHTCCCCGGGTCBSSCHHHHHHHHHTTEEEEECC--------------------TTSEEEEEEEETTS
T ss_pred HHHHHhhccccccccccccCCCCCCCCCHHHHHHHHhCceEEEEeC--------------------CCCeecccccCCCC
Confidence 3444 68999999985 2 24455543446777742 12347888877665
Q ss_pred h-hhHHHHHHHHHHHHHHcc
Q 023341 214 A-NIVDIRLRQAQEIIEELL 232 (283)
Q Consensus 214 ~-~~~~~rl~~A~e~Ie~LL 232 (283)
. +...+-+...++.|.+.+
T Consensus 182 ~~e~L~eNi~a~i~~i~~~k 201 (229)
T 3u42_A 182 PPEKLADNIRAFIRALEAHK 201 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHHhC
Confidence 4 334445666666666554
No 65
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=25.78 E-value=45 Score=30.76 Aligned_cols=36 Identities=11% Similarity=0.005 Sum_probs=26.2
Q ss_pred HHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch
Q 023341 163 LKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA 214 (283)
Q Consensus 163 lK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~ 214 (283)
..++-+.-|+++.+.|| ..|...|= | ||.+.+++.+
T Consensus 291 ~~~~~~~p~~~~~~ygk-~~r~~rkm----G-----------hv~~~~~~~~ 326 (355)
T 3eth_A 291 NYDWLKLPLVHLHWYDK-EVRPGRKV----G-----------HLNLTDSDTS 326 (355)
T ss_dssp CGGGGGSTTCEEEECCC-CCCTTCEE----E-----------EEEEECSCHH
T ss_pred HHHHHhCCCCEEEEcCC-CCCCCCee----E-----------EEEEEcCCHH
Confidence 45666678999999999 66655432 2 9999987743
No 66
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=25.73 E-value=30 Score=32.61 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=29.6
Q ss_pred CCCCCccccceeCCCchhHHHHHHhh-CCeEEEec
Q 023341 145 TYPNFNFVGRLLGPRGNSLKRVEATT-GCRVYIRG 178 (283)
Q Consensus 145 ~~P~~NfvGrILGPrG~TlK~le~eT-gckI~IRG 178 (283)
.-|+++-+|..+|++|+.++.+..+. |=||-|=-
T Consensus 240 ~d~~iDpvGacvg~~G~ri~~i~~el~ge~Idii~ 274 (344)
T 1hh2_P 240 NDPNVDPIGACIGEGGSRIAAILKELKGEKLDVLK 274 (344)
T ss_dssp SSTTSCHHHHHHCTTSTTHHHHHHHTTTCEEEEEE
T ss_pred cCCCccccceeeccCCcEeHHHHHHhCCCeeeEEe
Confidence 34889999999999999999999998 77877654
No 67
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=25.20 E-value=16 Score=30.41 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=30.5
Q ss_pred eEEEEecCCCCCCCCccccceeCCCchhHHHHHHhhCCeEEEe
Q 023341 135 RILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIR 177 (283)
Q Consensus 135 ~~~kv~IPv~~~P~~NfvGrILGPrG~TlK~le~eTgckI~IR 177 (283)
+...|.||-++ .++.||-+|.+++-..+-||++|-|.
T Consensus 103 ~~~~V~V~~~q------~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 103 KQVVIKVSEDD------KGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEECTTT------HHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred EEEEEEEChHH------hhhccCCCCHHHHHHHHHhCCeeCce
Confidence 34567788554 48999999999999999999998775
No 68
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=23.67 E-value=99 Score=24.90 Aligned_cols=19 Identities=11% Similarity=0.074 Sum_probs=16.5
Q ss_pred hHHHHHHhhCCeEEEeccC
Q 023341 162 SLKRVEATTGCRVYIRGKG 180 (283)
Q Consensus 162 TlK~le~eTgckI~IRGkG 180 (283)
.+++||++.|+++..|..|
T Consensus 58 ~I~~LE~~lG~~Lf~R~~~ 76 (135)
T 2ijl_A 58 LVDALNHMFRQPVICSQRG 76 (135)
T ss_dssp HHHHHHHHBSSCSEEECCC
T ss_pred HHHHHHHHHCCeeEEecCC
Confidence 4689999999999999853
No 69
>1wjw_A Phosphoacetylglucosamine mutase; carbohydrate metabolism, structural genomics, riken structural genomics/proteomics initiative, RSGI, isomerase; NMR {Mus musculus} SCOP: d.129.2.1
Probab=23.33 E-value=2.3e+02 Score=21.81 Aligned_cols=52 Identities=15% Similarity=0.246 Sum_probs=31.1
Q ss_pred hhHHHHHHhh-CCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCchhhHHHHHHHHHHHHHHcc
Q 023341 161 NSLKRVEATT-GCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELL 232 (283)
Q Consensus 161 ~TlK~le~eT-gckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~~~~~~rl~~A~e~Ie~LL 232 (283)
.++..|+... +..|.||--|+ .--++|++++.+.+ .++..++...+.|+.++
T Consensus 45 ~~idgl~~~~~~gwvlvRpSGT-------------------EP~irvy~Ea~~~~-~~~~~~~~~~~~i~~~~ 97 (112)
T 1wjw_A 45 EAINDLVKKYTLARAFVRPSGT-------------------EDIVRVYAEANSQE-SADRLAYEVSLLVFQLA 97 (112)
T ss_dssp HHHHHHHHHSSSEEEEEECSSS-------------------SSSEEEEEEESSHH-HHHHHHHHHHHHHHHHT
T ss_pred hhhhcEEEEcCCcEEEEEeCCC-------------------ccEEEEEEEECCHH-HHHHHHHHHHHHHHHHH
Confidence 4566666654 55899997653 12478999997643 44444444444444443
No 70
>1i2a_A 50S ribosomal protein L1P; primary rRNA-binding protein, translation repressor, ribosome; 1.85A {Methanocaldococcus jannaschii} SCOP: e.24.1.1 PDB: 1cjs_A 1u63_A 1dwu_A
Probab=20.98 E-value=1.2e+02 Score=26.39 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=37.4
Q ss_pred cccceeCCCch----------hHHHHHHhhCCeEEEeccCCCCCCCcccccCCCCCCCCCCCCceEEEEecCch-hhHHH
Q 023341 151 FVGRLLGPRGN----------SLKRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPA-NIVDI 219 (283)
Q Consensus 151 fvGrILGPrG~----------TlK~le~eTgckI~IRGkGS~kd~~kee~lrg~p~~ehl~epLHVlI~a~~~~-~~~~~ 219 (283)
++|++|||||. -.+.|++.-++ |..|-+. ..-+||-|--.+.. +...+
T Consensus 118 ~LGk~LgprgkmP~pk~gt~dv~~~v~~~k~~-v~~r~~k--------------------~~~i~v~VG~~~~~~e~L~e 176 (219)
T 1i2a_A 118 YMGVILGPRGKMPKPVPANANIKPLVERLKKT-VVINTRD--------------------KPYFQVLVGNEKMTDEQIVD 176 (219)
T ss_dssp HTHHHHGGGTCCCEEECTTCCCHHHHHHHHTE-EEEECTT--------------------SSEEEEEEEETTSCHHHHHH
T ss_pred HHhhhhcccCCCCcccCCCccHHHHHHHHhcc-eEEEecC--------------------CCEEEEEEecCCCCHHHHHH
Confidence 47999999874 44556655555 7776321 12368888766544 33445
Q ss_pred HHHHHHHHHHHcc
Q 023341 220 RLRQAQEIIEELL 232 (283)
Q Consensus 220 rl~~A~e~Ie~LL 232 (283)
-+..+++.|.+.+
T Consensus 177 Ni~a~i~~l~~~~ 189 (219)
T 1i2a_A 177 NIEAVLNVVAKKY 189 (219)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666664
No 71
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=20.25 E-value=45 Score=28.10 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=17.1
Q ss_pred hHHHHHHhhCCeEEEeccC
Q 023341 162 SLKRVEATTGCRVYIRGKG 180 (283)
Q Consensus 162 TlK~le~eTgckI~IRGkG 180 (283)
.+|+||++.|+++..|++|
T Consensus 40 ~i~~LE~~lg~~Lf~R~~~ 58 (303)
T 3isp_A 40 RIKSLEQQVGQVLVVREKP 58 (303)
T ss_dssp HHHHHHHHHTSCCEECSSS
T ss_pred HHHHHHHHhCCeeEEcCCC
Confidence 5899999999999999864
Done!