BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023342
         (283 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6CLQ8|GEP3_KLULA Genetic interactor of prohibitins 3, mitochondrial OS=Kluyveromyces
           lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
           1267 / NRRL Y-1140 / WM37) GN=GEP3 PE=3 SV=2
          Length = 550

 Score = 33.9 bits (76), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 160 NFVVTDRGEVITFEGMMVPSRGQAAFLTFCTCISLASVALVLTITYPDIGNNWFWITILS 219
           N+++  + + IT++  M+P +G A F  FC       V  V+  + P    NW   ++++
Sbjct: 148 NYLLLSKADQITYKSSMLPHKGSAFFAEFCRRHIGVHVKKVVLFSNP---RNWNIPSVIN 204

Query: 220 PLAGAYY 226
            LA   Y
Sbjct: 205 ALAKRCY 211


>sp|P27189|TRAC4_ECOLX DNA primase TraC OS=Escherichia coli GN=traC PE=1 SV=1
          Length = 1061

 Score = 32.7 bits (73), Expect = 2.8,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 27  LKFKDSTQQQSWLRQAPNPPSSPTTRAKKKQLA-VAVAVQEPLLASTSALIEHINNLDQN 85
           L F+    Q+   +QA  P    T   ++ Q+A  A+A  + L+A T  +        + 
Sbjct: 292 LAFEQKQIQEQTTQQAIEPAQGATMEQQQDQVARPAIAPADELIAQTLRMYRAGAEPAEG 351

Query: 86  RQSLYLLAESTAGYSLASYYT 106
            QSL  L E+T G+ L + +T
Sbjct: 352 NQSLAALTETTLGFELPADWT 372


>sp|O54794|AQP7_MOUSE Aquaporin-7 OS=Mus musculus GN=Aqp7 PE=2 SV=1
          Length = 303

 Score = 32.7 bits (73), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 209 GNNWFWITILSPLAGAY 225
           GNNW+W+ +++PL GAY
Sbjct: 235 GNNWWWVPVVAPLLGAY 251


>sp|P56403|AQP7_RAT Aquaporin-7 OS=Rattus norvegicus GN=Aqp7 PE=2 SV=2
          Length = 269

 Score = 32.3 bits (72), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 10/17 (58%), Positives = 15/17 (88%)

Query: 209 GNNWFWITILSPLAGAY 225
           GNNW+W+ +++PL GAY
Sbjct: 234 GNNWWWVPVVAPLLGAY 250


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,811,264
Number of Sequences: 539616
Number of extensions: 3766550
Number of successful extensions: 11595
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 11575
Number of HSP's gapped (non-prelim): 24
length of query: 283
length of database: 191,569,459
effective HSP length: 116
effective length of query: 167
effective length of database: 128,974,003
effective search space: 21538658501
effective search space used: 21538658501
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)